Citrus Sinensis ID: 047486

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770------
Protein Sequence
MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRRHR
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccHHHHcccccccEEEccccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccEEcccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEccHHHccccccccEEEcccccccccccccccccccccccccEEEEcccccccccHHHcccccccEEEccccccccccccHHHHccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccHHHHHcccccEEEcccccccccccHHHHccccccEEEcccccccEEccccccccccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEccccHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEEcccccccccccHHHHcccccEEEEccccccccccccccccccHHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHcccccEEEEEcccccccccccccccccccccccEEEEcccccccccccHHccccccEEEEcccccccccccHHHHHcccccEEEEcccccccccccccccccEEEEEccccccccccccccccEEEEEcccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEcccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccccccccccEHHHHHcccccccccHHHcccccEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccHEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mshlsklthldlSFCVLTIEQRTFDLLASNLTKLSLLHLGatnmslikpfsllnlsstmtdldlggtrikgnfpddifrlpnLQILFLNLNsqltgylpksnwssplreldllsvldigfcnftgsiptsignltRATEIafasnhftgqlphhvsglsylttfdlsgnyfqggvpswlftlpsllsidlsknmlngpidlfqlpnslqdvrleeneirgtipnstfQLVNLTILdlssnnlsgairfdqfsklkklqfldlsnnsllsftssanisikyslpslKVLRFAYCnitefpgflrnseeLYLLDlsnnriqgrisksdspgwkslidldlsnnfmthielhpwmnittldlrnnriqgsilvpppstkVLLVsnnklsgkippsicslsslqylslsdnnlsgtippclgnfSTELITLHLknnsleghihdtfanashlrsldlnsnklegplprslaKCIKLEVVNVGknmisdsfpcwlgslhELKILVLrsnrfygplcnsnitfpfqaLRIIdlshneftgflprrifpsmeamKNVDEQGRLeymggafydeSITVAMQGHDFQLQKILVMFRAmdfsrnrfhgeipevlgnfksLKVLNLshnsltgnipvsfenmtalesLDLSfnkldgripeQLLSVTALALLNLSYNrlwgriprgnqfntfendsyignihlcgepltvrcsndglpealplassdhdetasRFDWKMAKMGYASGLVIGLSIGYMvfstgkpqwFVRMVEGDQQKNVRRARRRHR
Flexible Loop (DISEMBL)
mshlsklthlDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIrgtipnstfQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIqgrisksdspgwKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGsilvpppsTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFvrmvegdqqknvrrarrrhr
Low Complexity Region (SEG)
MSHLSKLTHLDLSFCVLTIEQRTFDllasnltklsllhlGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKlqfldlsnnsllsftssANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPsicslsslqylslsdnnlsGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQllsvtalallnlsYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRRHR
Disordered region (IsUnstruct)
******LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRI*****PGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL******GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGL***************SRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMV****************
Disordered Region (DISOPRED)
MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEA***********YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL**************************FDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRAR****
Disordered Region (DISEMBL)
MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPL********ASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGD*************
Disordered Region (DISPRO)
*SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRC********************SRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRRHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	776	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.887	0.813	0.349	3e-95
Q9FL28	1173	LRR receptor-like serine/	no	no	0.798	0.528	0.327	4e-61
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.820	0.508	0.298	1e-57
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.719	0.446	0.307	3e-55
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.845	0.595	0.304	2e-53
Q9LP24	1120	Probable leucine-rich rep	no	no	0.75	0.519	0.316	2e-52
O49318	1124	Probable leucine-rich rep	no	no	0.770	0.532	0.297	8e-52
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.746	0.571	0.319	1e-49
Q42371	976	LRR receptor-like serine/	no	no	0.658	0.523	0.299	8e-49
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.770	0.501	0.314	1e-48

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  350 bits (897), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 263/752 (34%), Positives = 387/752 (51%), Gaps = 63/752 (8%)

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           LDL    + G  P  +  L +L ++ L  N +  G +P S     +  L+ L  L +   
Sbjct: 115 LDLTNCNLYGEIPSSLGNLSHLTLVNLYFN-KFVGEIPAS-----IGNLNQLRHLILANN 168

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
             TG IP+S+GNL+R   +   SN   G++P  +  L  L    L+ N   G +PS L  
Sbjct: 169 VLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGN 228

Query: 182 LPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
           L +L+ + L+ N L G  P  +  L   L+ +  E N + G IP S   L  L+I  LSS
Sbjct: 229 LSNLVHLVLTHNQLVGEVPASIGNLI-ELRVMSFENNSLSGNIPISFANLTKLSIFVLSS 287

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299
           NN +    FD  S    L++ D+S NS  S     ++ +  SL S+ +    +    EF 
Sbjct: 288 NNFTSTFPFD-MSIFHNLEYFDVSYNSF-SGPFPKSLLLIPSLESIYLQENQFTGPIEFA 345

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS-NNFMTHI--ELHPWMNITT 356
               +S +L  L L  NR+ G I +S S    +L +LD+S NNF   I   +   +N+  
Sbjct: 346 N-TSSSTKLQDLILGRNRLHGPIPESIS-RLLNLEELDISHNNFTGAIPPTISKLVNLLH 403

Query: 357 LDLRNNRIQGSILVPPPSTKVLLVSNNKLS-----------------------GKIPPSI 393
           LDL  N ++G +         +++S+N  S                       G IP  I
Sbjct: 404 LDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMI 463

Query: 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
           C LSSL +L LS+N  SG+IP C+ NFS  +  L+L +N+  G + D F+ A+ L SLD+
Sbjct: 464 CKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDV 523

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
           + N+LEG  P+SL  C  LE+VNV  N I D FP WL SL  L +L LRSN+FYGPL + 
Sbjct: 524 SHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHR 583

Query: 514 NITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM------GGAFYDES 567
           + +  FQ+LRIID+SHN F+G LP   F + + M  + E+   +YM        ++Y E 
Sbjct: 584 HASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMD-QYMTEFWRYADSYYHE- 641

Query: 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 627
           + +  +G D   ++I   FRA+DFS N+ +G IPE LG  K L+VLNLS N+ T  IP  
Sbjct: 642 MEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRF 701

Query: 628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYI 687
             N+T LE+LD+S NKL G+IP+ L +++ L+ +N S+N L G +PRG QF   +  S++
Sbjct: 702 LANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFL 761

Query: 688 GNIHLCGEPLTVRCSNDG-------LPEALPLASSDHDETASRFDWKMAKMGYASGLVIG 740
            N  L G  L   C + G       LPE L  A  +       F+W  A + Y  G++ G
Sbjct: 762 DNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEEN------MFNWVAAAIAYGPGVLCG 813

Query: 741 LSIGYMVFSTGKPQWFVRMVEGDQQKNVRRAR 772
           L IG+  +++   +WF       Q K +   +
Sbjct: 814 LVIGHF-YTSHNHEWFTEKFGRKQHKALTSVK 844

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  236 bits (603), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 218/666 (32%), Positives = 326/666 (48%), Gaps = 46/666 (6%)

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           LDL    + G+ P++I +  +L ++  + N+ LTG +P+      L +L  L +      
Sbjct: 149 LDLRNNLLSGDVPEEICKTSSLVLIGFDYNN-LTGKIPEC-----LGDLVHLQMFVAAGN 202

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
           + TGSIP SIG L   T++  + N  TG++P     L  L +  L+ N  +G +P+ +  
Sbjct: 203 HLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGN 262

Query: 182 LPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
             SL+ ++L  N L G  P +L  L   LQ +R+ +N++  +IP+S F+L  LT L LS 
Sbjct: 263 CSSLVQLELYDNQLTGKIPAELGNLVQ-LQALRIYKNKLTSSIPSSLFRLTQLTHLGLSE 321

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT-EF 298
           N+L G I  ++   L+ L+ L L +N+   FT     SI  +L +L VL   + NI+ E 
Sbjct: 322 NHLVGPIS-EEIGFLESLEVLTLHSNN---FTGEFPQSIT-NLRNLTVLTVGFNNISGEL 376

Query: 299 PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW--MNITT 356
           P  L     L  L   +N + G I  S S     L  LDLS+N MT      +  MN+T 
Sbjct: 377 PADLGLLTNLRNLSAHDNLLTGPIPSSIS-NCTGLKLLDLSHNQMTGEIPRGFGRMNLTF 435

Query: 357 LDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTI 413
           + +  N   G I   +    + + L V++N L+G + P I  L  L+ L +S N+L+G I
Sbjct: 436 ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPI 495

Query: 414 PPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLE 473
           P  +GN   +L  L+L +N   G I    +N + L+ L + SN LEGP+P  +     L 
Sbjct: 496 PREIGNLK-DLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLS 554

Query: 474 VVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533
           V+++  N  S   P     L  L  L L+ N+F G +  S  +     L   D+S N  T
Sbjct: 555 VLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSL--LNTFDISDNLLT 612

Query: 534 GFLPRRIFPSMEAMK-------NV------DEQGRLEYMGGAFYDESITVAMQGHDFQLQ 580
           G +P  +  S++ M+       N+       E G+LE +     D S  +        LQ
Sbjct: 613 GTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMV--QEIDLSNNLFSGSIPRSLQ 670

Query: 581 KILVMFRAMDFSRNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 639
               +F  +DFS+N   G IP EV      +  LNLS NS +G IP SF NMT L SLDL
Sbjct: 671 ACKNVF-TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDL 729

Query: 640 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCG----- 694
           S N L G IPE L +++ L  L L+ N L G +P    F        +GN  LCG     
Sbjct: 730 SSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPL 789

Query: 695 EPLTVR 700
           +P T++
Sbjct: 790 KPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 220/737 (29%), Positives = 339/737 (45%), Gaps = 100/737 (13%)

Query: 30  NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLN 89
           NL  L +L L +  ++ + P     L    T L L    ++G  P +I    +L +    
Sbjct: 166 NLVNLQMLALASCRLTGLIPSRFGRLVQLQT-LILQDNELEGPIPAEIGNCTSLALFAAA 224

Query: 90  LNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG 149
            N +L G LP     + L  L  L  L++G  +F+G IP+ +G+L     +    N   G
Sbjct: 225 FN-RLNGSLP-----AELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQG 278

Query: 150 QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG--PIDLFQLPNS 207
            +P  ++ L+ L T DLS N   G +    + +  L  + L+KN L+G  P  +     S
Sbjct: 279 LIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTS 338

Query: 208 LQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267
           L+ + L E ++ G IP       +L +LDLS+N L+G I  D   +L +L  L L+NNSL
Sbjct: 339 LKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIP-DSLFQLVELTNLYLNNNSL 397

Query: 268 LSFTSSANISIKYSLPSLKVLRFAYCNIT-EFP---GFLRNSEELYL------------- 310
              T S++IS   +L +L+     + N+  + P   GFL   E +YL             
Sbjct: 398 -EGTLSSSIS---NLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEI 453

Query: 311 --------LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH---IELHPWMNITTLDL 359
                   +D   NR+ G I  S     K L  L L  N +       L     +T +DL
Sbjct: 454 GNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLHLRENELVGNIPASLGNCHQMTVIDL 512

Query: 360 RNNRIQGSILVPPPST-------KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
            +N++ GSI    PS+       ++ ++ NN L G +P S+ +L +L  ++ S N  +G+
Sbjct: 513 ADNQLSGSI----PSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGS 568

Query: 413 IPPCLGNFS----------------------TELITLHLKNNSLEGHIHDTFANASHLRS 450
           I P  G+ S                      T L  L L  N   G I  TF   S L  
Sbjct: 569 ISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSL 628

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           LD++ N L G +P  L  C KL  +++  N +S   P WLG L  L  L L SN+F G L
Sbjct: 629 LDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSL 688

Query: 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES-IT 569
                 F    +  + L  N   G +P+ I             G L+ +     +E+ ++
Sbjct: 689 PTE--IFSLTNILTLFLDGNSLNGSIPQEI-------------GNLQALNALNLEENQLS 733

Query: 570 VAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK-VLNLSHNSLTGNIPVSF 628
             +     +L K+      +  SRN   GEIP  +G  + L+  L+LS+N+ TG IP + 
Sbjct: 734 GPLPSTIGKLSKLF----ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTI 789

Query: 629 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIG 688
             +  LESLDLS N+L G +P Q+  + +L  LNLSYN L G++ +  QF+ ++ D+++G
Sbjct: 790 STLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVG 847

Query: 689 NIHLCGEPLTVRCSNDG 705
           N  LCG PL+  C+  G
Sbjct: 848 NAGLCGSPLS-HCNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  217 bits (552), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 214/697 (30%), Positives = 300/697 (43%), Gaps = 139/697 (19%)

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L+L    + G  P  +  +  LQ L L  N QL G +PKS     L +L  L  LD+   
Sbjct: 244 LNLANNSLTGEIPSQLGEMSQLQYLSLMAN-QLQGLIPKS-----LADLGNLQTLDLSAN 297

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSWLF 180
           N TG IP    N+++  ++  A+NH +G LP  + S  + L    LSG    G +P  L 
Sbjct: 298 NLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELS 357

Query: 181 TLPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
              SL  +DLS N L G  P  LF+L   L D+ L  N + GT+  S   L NL  L L 
Sbjct: 358 KCQSLKQLDLSNNSLAGSIPEALFELV-ELTDLYLHNNTLEGTLSPSISNLTNLQWLVLY 416

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
            NNL G +   + S L+KL+ L L  N                       RF+     E 
Sbjct: 417 HNNLEGKLP-KEISALRKLEVLFLYEN-----------------------RFS----GEI 448

Query: 299 PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH---IELHPWMNIT 355
           P  + N   L ++D+  N  +G I  S     K L  L L  N +       L     + 
Sbjct: 449 PQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLN 507

Query: 356 TLDLRNNRIQGSILVPPPST-------KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN 408
            LDL +N++ GSI    PS+       + L++ NN L G +P S+ SL +L  ++LS N 
Sbjct: 508 ILDLADNQLSGSI----PSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNR 563

Query: 409 LSGTIPPCLGNFS----------------------TELITLHLKNNSLEGHIHDTFANAS 446
           L+GTI P  G+ S                        L  L L  N L G I  T     
Sbjct: 564 LNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIR 623

Query: 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
            L  LD++SN L G +P  L  C KL  +++  N +S   P WLG L +L  L L SN+F
Sbjct: 624 ELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQF 683

Query: 507 YGPL------CNS-----------NITFPFQ-----ALRIIDLSHNEFTGFLPRRIFPSM 544
              L      C             N + P +     AL +++L  N+F+G LP       
Sbjct: 684 VESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLP------- 736

Query: 545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVL 604
           +AM  + +   L     +   E      Q  D Q         A+D S N F G+IP  +
Sbjct: 737 QAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQ--------SALDLSYNNFTGDIPSTI 788

Query: 605 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 664
           G    L+ L+LSHN LTG +P S  +M +L  L++SFN L G++ +              
Sbjct: 789 GTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK-------------- 834

Query: 665 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRC 701
                       QF+ +  DS++GN  LCG PL+ RC
Sbjct: 835 ------------QFSRWPADSFLGNTGLCGSPLS-RC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  211 bits (537), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 221/726 (30%), Positives = 329/726 (45%), Gaps = 70/726 (9%)

Query: 59  MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
           +  LDL    + G  P +I    +L+IL LN N+Q  G +P       + +L  L  L I
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGNCSSLEILKLN-NNQFDGEIPVE-----IGKLVSLENLII 152

Query: 119 GFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSW 178
                +GS+P  IGNL   +++   SN+ +GQLP  +  L  LT+F    N   G +PS 
Sbjct: 153 YNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSE 212

Query: 179 LFTLPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236
           +    SL+ + L++N L+G  P ++  L   L  V L ENE  G IP       +L  L 
Sbjct: 213 IGGCESLVMLGLAQNQLSGELPKEIGML-KKLSQVILWENEFSGFIPREISNCTSLETLA 271

Query: 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT 296
           L  N L G I   +   L+ L+FL L  N L         ++ Y++     + F+   +T
Sbjct: 272 LYKNQLVGPIP-KELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIE----IDFSENALT 326

Query: 297 -EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH---IELHPWM 352
            E P  L N E L LL L  N++ G I    S   K+L  LDLS N +T    +      
Sbjct: 327 GEIPLELGNIEGLELLYLFENQLTGTIPVELST-LKNLSKLDLSINALTGPIPLGFQYLR 385

Query: 353 NITTLDLRNNRIQGSILVPPPSTK------VLLVSNNKLSGKIPPSICSLSSLQYLSLSD 406
            +  L L  N + G+I   PP         VL +S+N LSG+IP  +C  S++  L+L  
Sbjct: 386 GLFMLQLFQNSLSGTI---PPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGT 442

Query: 407 NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL 466
           NNLSG IP  +    T L+ L L  N+L G          ++ +++L  N+  G +PR +
Sbjct: 443 NNLSGNIPTGITTCKT-LVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREV 501

Query: 467 AKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIID 526
             C  L+ + +  N  +   P  +G L +L  L + SN+  G + +    F  + L+ +D
Sbjct: 502 GNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSE--IFNCKMLQRLD 559

Query: 527 LSHNEFTGFLPRRI--FPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV 584
           +  N F+G LP  +     +E +K          +       +I VA+          L 
Sbjct: 560 MCCNNFSGTLPSEVGSLYQLELLK----------LSNNNLSGTIPVALGN--------LS 601

Query: 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKV-LNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
               +    N F+G IP  LG+   L++ LNLS+N LTG IP    N+  LE L L+ N 
Sbjct: 602 RLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNN 661

Query: 644 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSN 703
           L G IP    ++++L   N SYN L G IP           S+IGN  LCG PL  +C  
Sbjct: 662 LSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPLN-QCI- 716

Query: 704 DGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIG----LSIGYMVFSTGKPQWFVRM 759
               +  P A S    T      + +K+   +  VIG    + I  +V+   +P   VR 
Sbjct: 717 ----QTQPFAPS--QSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRRP---VRT 767

Query: 760 VEGDQQ 765
           V    Q
Sbjct: 768 VASSAQ 773

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  207 bits (528), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 202/638 (31%), Positives = 308/638 (48%), Gaps = 56/638 (8%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112
           N   ++ +L+L  T I+G F D  F  L NL  + L++N  L+G +P          L  
Sbjct: 74  NSRGSIEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMN-LLSGTIPPQ-----FGNLSK 127

Query: 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ 172
           L   D+   + TG I  S+GNL   T +    N+ T  +P  +  +  +T   LS N   
Sbjct: 128 LIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLT 187

Query: 173 GGVPSWLFTLPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
           G +PS L  L +L+ + L +N L G  P +L  +  S+ D+ L +N++ G+IP++   L 
Sbjct: 188 GSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNM-ESMTDLALSQNKLTGSIPSTLGNLK 246

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR- 289
           NL +L L  N L+G I   +   ++ +  L LS N L         SI  SL +LK L  
Sbjct: 247 NLMVLYLYENYLTGVIP-PEIGNMESMTNLALSQNKLTG-------SIPSSLGNLKNLTL 298

Query: 290 ---FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI 346
              F        P  L N E +  L+LSNN++ G I  S     K+L  L L  N++T +
Sbjct: 299 LSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLG-NLKNLTILYLYENYLTGV 357

Query: 347 ---ELHPWMNITTLDLRNNRIQGSILVPPPST-------KVLLVSNNKLSGKIPPSICSL 396
              EL    ++  L L NN++ GSI    PS+         L +  N L+G IP  + ++
Sbjct: 358 IPPELGNMESMIDLQLNNNKLTGSI----PSSFGNLKNLTYLYLYLNYLTGVIPQELGNM 413

Query: 397 SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
            S+  L LS N L+G++P   GNF T+L +L+L+ N L G I    AN+SHL +L L++N
Sbjct: 414 ESMINLDLSQNKLTGSVPDSFGNF-TKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTN 472

Query: 457 KLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNIT 516
              G  P ++ K  KL+ +++  N +    P  L     L       N+F G +  +   
Sbjct: 473 NFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGI 532

Query: 517 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHD 576
           +P   L  ID SHN+F G          E   N ++  +L  +     + +IT A+    
Sbjct: 533 YP--DLNFIDFSHNKFHG----------EISSNWEKSPKLGAL--IMSNNNITGAIPTEI 578

Query: 577 FQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 636
           + + +++     +D S N   GE+PE +GN  +L  L L+ N L+G +P     +T LES
Sbjct: 579 WNMTQLV----ELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLES 634

Query: 637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674
           LDLS N     IP+   S   L  +NLS N+  G IPR
Sbjct: 635 LDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR 672

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  206 bits (523), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 211/710 (29%), Positives = 323/710 (45%), Gaps = 112/710 (15%)

Query: 4   LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLD 63
           L  L +L+L++  LT +         N +KL ++ L         P  + N  S +   +
Sbjct: 108 LVNLVYLNLAYNALTGD---IPREIGNCSKLEVMFLNNNQFGGSIPVEI-NKLSQLRSFN 163

Query: 64  LGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNF 123
           +   ++ G  P++I  L NL+ L    N+ LTG LP+S     L  L+ L+    G  +F
Sbjct: 164 ICNNKLSGPLPEEIGDLYNLEELVAYTNN-LTGPLPRS-----LGNLNKLTTFRAGQNDF 217

Query: 124 TGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLP 183
           +G+IPT IG       +  A N  +G+LP  +  L  L    L  N F G +P  +  L 
Sbjct: 218 SGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLT 277

Query: 184 SLLSIDLSKNMLNGPIDLFQLPN--SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           SL ++ L  N L GPI   ++ N  SL+ + L +N++ GTIP    +L  +  +D S N 
Sbjct: 278 SLETLALYGNSLVGPIP-SEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENL 336

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF--- 298
           LSG I  +  SK+ +L+ L L  N L          I   L  L+ L     +I      
Sbjct: 337 LSGEIPVE-LSKISELRLLYLFQNKLTGI-------IPNELSKLRNLAKLDLSINSLTGP 388

Query: 299 --PGFLRNSEELYLLDLSNNRIQGRISKS---DSPGWKSLIDLDLSNNFMTHIELHPWM- 352
             PGF +N   +  L L +N + G I +     SP W     +D S N ++  ++ P++ 
Sbjct: 389 IPPGF-QNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWV----VDFSENQLSG-KIPPFIC 442

Query: 353 ---NITTLDLRNNRIQGSILVPPPSTKV-----LLVSNNKLSGKIPPSICSLSSLQYLSL 404
              N+  L+L +NRI G+I  PP   +      L V  N+L+G+ P  +C L +L  + L
Sbjct: 443 QQSNLILLNLGSNRIFGNI--PPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIEL 500

Query: 405 SDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPR 464
             N  SG +PP +G    +L  LHL  N    ++ +  +  S+L + +++SN L GP+P 
Sbjct: 501 DQNRFSGPLPPEIGT-CQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPS 559

Query: 465 SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRI 524
            +A C  L+ +++ +N    S P  LGSLH+L+IL L  NRF G     NI F       
Sbjct: 560 EIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSG-----NIPF------- 607

Query: 525 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV 584
                                 + N+     L+ MGG  +  SI         QL  +  
Sbjct: 608 ---------------------TIGNLTHLTELQ-MGGNLFSGSIPP-------QLGLLSS 638

Query: 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
           +  AM+ S N F GEIP  +GN   L  L+L++N L+G IP +FEN+++L          
Sbjct: 639 LQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGC------- 691

Query: 645 DGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCG 694
                            N SYN L G++P    F      S++GN  LCG
Sbjct: 692 -----------------NFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 213/666 (31%), Positives = 303/666 (45%), Gaps = 87/666 (13%)

Query: 116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
           LD+   N TG I  SI                        S LS L +F++S N F+  +
Sbjct: 76  LDLAGMNLTGKISDSI------------------------SQLSSLVSFNISCNGFESLL 111

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE--NEIRGTIPNSTFQLVNLT 233
           P    ++P L SID+S+N  +G + LF    SL  V L    N + G +      LV+L 
Sbjct: 112 PK---SIPPLKSIDISQNSFSGSLFLFS-NESLGLVHLNASGNNLSGNLTEDLGNLVSLE 167

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
           +LDL  N   G++    F  L+KL+FL LS N+L    +    S+   LPSL+     Y 
Sbjct: 168 VLDLRGNFFQGSLP-SSFKNLQKLRFLGLSGNNL----TGELPSVLGQLPSLETAILGY- 221

Query: 294 NITEFPGFL----RNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDL-SNNFMTHI-- 346
              EF G +     N   L  LDL+  ++ G I  S+    KSL  L L  NNF   I  
Sbjct: 222 --NEFKGPIPPEFGNINSLKYLDLAIGKLSGEI-PSELGKLKSLETLLLYENNFTGTIPR 278

Query: 347 ELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLS 403
           E+     +  LD  +N + G I   +    + ++L +  NKLSG IPP+I SL+ LQ L 
Sbjct: 279 EIGSITTLKVLDFSDNALTGEIPMEITKLKNLQLLNLMRNKLSGSIPPAISSLAQLQVLE 338

Query: 404 LSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
           L +N LSG +P  LG  ++ L  L + +NS  G I  T  N  +L  L L +N   G +P
Sbjct: 339 LWNNTLSGELPSDLGK-NSPLQWLDVSSNSFSGEIPSTLCNKGNLTKLILFNNTFTGQIP 397

Query: 464 RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL---CNSNITFPFQ 520
            +L+ C  L  V +  N+++ S P   G L +L+ L L  NR  G +    + +++  F 
Sbjct: 398 ATLSTCQSLVRVRMQNNLLNGSIPIGFGKLEKLQRLELAGNRLSGGIPGDISDSVSLSF- 456

Query: 521 ALRIIDLSHNEFTGFLPRRIFP--SMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQ 578
               ID S N+    LP  I    +++A    D      ++ G   D+          FQ
Sbjct: 457 ----IDFSRNQIRSSLPSTILSIHNLQAFLVAD-----NFISGEVPDQ----------FQ 497

Query: 579 LQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 638
               L     +D S N   G IP  + + + L  LNL +N+LTG IP     M+AL  LD
Sbjct: 498 DCPSL---SNLDLSSNTLTGTIPSSIASCEKLVSLNLRNNNLTGEIPRQITTMSALAVLD 554

Query: 639 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 698
           LS N L G +PE + +  AL LLN+SYN+L G +P      T   D   GN  LCG  L 
Sbjct: 555 LSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLCGGVLP 614

Query: 699 VRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVR 758
             CS          A+S H     +       +G AS  V+ L I  +V  T   +W+  
Sbjct: 615 -PCSK------FQRATSSHSSLHGKRIVAGWLIGIAS--VLALGILTIVTRTLYKKWYSN 665

Query: 759 MVEGDQ 764
              GD+
Sbjct: 666 GFCGDE 671

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  196 bits (497), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 193/645 (29%), Positives = 289/645 (44%), Gaps = 134/645 (20%)

Query: 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG 174
            L++   N  G I  +IG+L     I    N  +GQ+P  +   S L   DLS N   G 
Sbjct: 72  ALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGD 131

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNL 232
           +P  +  L  L  + L  N L GPI   L Q+PN L+ + L +N++ G IP   +    L
Sbjct: 132 IPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPN-LKILDLAQNKLSGEIPRLIYWNEVL 190

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
             L L  NNL G I  D   +L  L + D+ NNSL   T S   +I  +  + +VL  +Y
Sbjct: 191 QYLGLRGNNLVGNISPD-LCQLTGLWYFDVRNNSL---TGSIPETIG-NCTAFQVLDLSY 245

Query: 293 CNIT-EFP---GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL 348
             +T E P   GFL    ++  L L  N++ G+I         S+I L            
Sbjct: 246 NQLTGEIPFDIGFL----QVATLSLQGNQLSGKI--------PSVIGL------------ 281

Query: 349 HPWMNITTLDLRNNRIQGSILVPP-----PSTKVLLVSNNKLSGKIPPSICSLSSLQYLS 403
                +  LDL  N + GSI  PP       T+ L + +NKL+G IPP + ++S L YL 
Sbjct: 282 --MQALAVLDLSGNLLSGSI--PPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLE 337

Query: 404 LSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
           L+DN+L+G IPP LG   T+L  L++ NN LEG I D  ++ ++L SL+++ NK  G +P
Sbjct: 338 LNDNHLTGHIPPELGKL-TDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIP 396

Query: 464 RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR 523
           R+  K   +  +N+  N I    P  L  +  L  L L +N+  G + +S      + L 
Sbjct: 397 RAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSS--LGDLEHLL 454

Query: 524 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL 583
            ++LS N  TG +P                       G F +             L+ I+
Sbjct: 455 KMNLSRNHITGVVP-----------------------GDFGN-------------LRSIM 478

Query: 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
                +D S N   G IPE L   +++ +L L +N+LTGN+                   
Sbjct: 479 ----EIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNV------------------- 515

Query: 644 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSN 703
                   L +  +L +LN+S+N L G IP+ N F+ F  DS+IGN  LCG  L   C  
Sbjct: 516 ------GSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPC-- 567

Query: 704 DGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVF 748
                        HD   SR   +  ++  +   ++G++IG +V 
Sbjct: 568 -------------HD---SR---RTVRVSISRAAILGIAIGGLVI 593

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  195 bits (496), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 206/655 (31%), Positives = 306/655 (46%), Gaps = 57/655 (8%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
           S+L  L  L L     S   P  + NL    T LDL G  + G  P  +  LP  Q+L+L
Sbjct: 86  SSLKNLRELCLAGNQFSGKIPPEIWNLKHLQT-LDLSGNSLTGLLPRLLSELP--QLLYL 142

Query: 89  NL-NSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHF 147
           +L ++  +G LP S + S    L  LS LD+   + +G IP  IG L+  + +    N F
Sbjct: 143 DLSDNHFSGSLPPSFFIS----LPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSF 198

Query: 148 TGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI-DLFQLPN 206
           +GQ+P  +  +S L  F     +F G +P  +  L  L  +DLS N L   I   F   +
Sbjct: 199 SGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELH 258

Query: 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS 266
           +L  + L   E+ G IP       +L  L LS N+LSG +             L+LS   
Sbjct: 259 NLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLP------------LELSEIP 306

Query: 267 LLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKS- 325
           LL+F++  N  +  SLPS                ++   + L  L L+NNR  G I    
Sbjct: 307 LLTFSAERN-QLSGSLPS----------------WMGKWKVLDSLLLANNRFSGEIPHEI 349

Query: 326 -DSPGWKSLIDLDLSNNFMTHI---ELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVL 378
            D P  K    L L++N ++     EL    ++  +DL  N + G+I        S   L
Sbjct: 350 EDCPMLK---HLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGEL 406

Query: 379 LVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI 438
           L++NN+++G IP  +  L  L  L L  NN +G IP  L   ST L+      N LEG++
Sbjct: 407 LLTNNQINGSIPEDLWKLP-LMALDLDSNNFTGEIPKSLWK-STNLMEFTASYNRLEGYL 464

Query: 439 HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKI 498
                NA+ L+ L L+ N+L G +PR + K   L V+N+  NM     P  LG    L  
Sbjct: 465 PAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTT 524

Query: 499 LVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY 558
           L L SN   G + +  IT   Q L+ + LS+N  +G +P +       ++  D    L++
Sbjct: 525 LDLGSNNLQGQIPD-KITALAQ-LQCLVLSYNNLSGSIPSKPSAYFHQIEMPD-LSFLQH 581

Query: 559 MGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHN 618
            G   +D S          +L + LV+   +  S N   GEIP  L    +L +L+LS N
Sbjct: 582 HG--IFDLSYNRLSGPIPEELGECLVLVE-ISLSNNHLSGEIPASLSRLTNLTILDLSGN 638

Query: 619 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673
           +LTG+IP    N   L+ L+L+ N+L+G IPE    + +L  LNL+ N+L G +P
Sbjct: 639 ALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
224116970	921	predicted protein [Populus trichocarpa]	0.989	0.833	0.464	1e-172
255568090	1014	serine/threonine-protein kinase bri1, pu	0.981	0.751	0.441	1e-171
225462116	1001	PREDICTED: receptor-like protein 12-like	0.949	0.736	0.437	1e-169
225459979	979	PREDICTED: receptor-like protein 12-like	0.957	0.758	0.431	1e-161
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.953	0.751	0.433	1e-160
359493539	1001	PREDICTED: receptor-like protein 12-like	0.930	0.721	0.465	1e-159
164605528	912	CM0545.410.nc [Lotus japonicus]	0.957	0.814	0.438	1e-156
356553697	895	PREDICTED: receptor-like protein 12-like	0.943	0.817	0.441	1e-154
356553684	895	PREDICTED: receptor-like protein 12-like	0.940	0.815	0.442	1e-154
359485824	973	PREDICTED: receptor-like protein 12-like	0.972	0.775	0.428	1e-152

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 387/834 (46%), Positives = 522/834 (62%), Gaps = 66/834 (7%)

Query: 1   MSHLSKLTHLDLSFCV-LTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
           +SHLSKL  LDLS    L +E     ++  NLT +  + L   NMS +   SL+NLSS++
Sbjct: 94  ISHLSKLISLDLSLNEPLILEAPAMKMIVQNLTLVREIFLDYINMSSVDLGSLMNLSSSL 153

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR----------- 108
           T L L    ++G FP++IF LPNLQ+L L LNS L G LP SNWSS L            
Sbjct: 154 TSLSLNLCGLQGQFPENIFHLPNLQLLSLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSG 213

Query: 109 -------ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYL 161
                   LD + VLD+G C F GS+P S+GNL +  ++  ++N++TGQ+P     LS L
Sbjct: 214 GLPEIIGNLDSIKVLDLGNCAFYGSVPASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKL 273

Query: 162 TTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG------------------------ 197
            +  L    F G +PS +F L  LL +DLS+N L G                        
Sbjct: 274 NSLSLQVGNFSGMLPSSVFNLTELLRLDLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSG 333

Query: 198 --PIDLFQLP--------NSLQDVRLEE--NEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
             P  LF LP        N+     L E  N+I G IP S  +LVNLT  D+SSNNLSG 
Sbjct: 334 TIPSCLFGLPSLVWFNLNNNHLTGELGEHCNKINGLIPPSISELVNLTNFDVSSNNLSGI 393

Query: 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNS 305
           +  + FS +K L  LDLS+NSL   T++   S   + P    L  + CNI EFP FL+  
Sbjct: 394 VDLNLFSNMKNLWGLDLSHNSLSVVTNNNRNS---TWPQFYKLALSSCNIIEFPDFLKIQ 450

Query: 306 EELYLLDLSNNRIQGRISKS-DSPGWKSLIDLDLSNNFMTHI-ELHPWMNITTLDLRNNR 363
            +L  L LS+NRI G I K   + G +SL  LDLS+NF+T + EL P  ++  LDL +N 
Sbjct: 451 NQLNFLSLSHNRIHGEIPKWLSAKGMQSLQYLDLSHNFLTIVNELPP--SLQYLDLTSNL 508

Query: 364 IQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTE 423
           +Q    + P S  +LL++NNKL+G+IPP IC++++ Q ++LS+N+LSG IP CLGNFSTE
Sbjct: 509 LQQPFPILPQSMYILLIANNKLTGEIPPWICNITTFQIINLSNNSLSGNIPQCLGNFSTE 568

Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
           L  L+L++NS  G I  +F   + +RSLDLN N+LEG LP SLA C  LEV+++G N I+
Sbjct: 569 LSVLNLRSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYIN 628

Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 543
           DSFP WL +L +L++LVLRSNR +G + N     PF +LRIIDLSHNEF G LP +   +
Sbjct: 629 DSFPLWLQTLPKLQVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIAN 688

Query: 544 MEAMKNVDEQGRL--EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP 601
            +AMK VD + +   +Y+G  +Y +SI + M+G +  +++IL +F  +D S NRF G+IP
Sbjct: 689 FQAMKKVDGEVKATPKYIGEIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIP 748

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 661
           + +G   SL VLN+S NS+TG IP S  N+TALESLDLS N L G IP QL  +T LA+L
Sbjct: 749 KEVGLLSSLIVLNISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVL 808

Query: 662 NLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETA 721
           NLSYN+L G IP G+QF+TF+NDSY+GN+ LCG PL+V+CS D  P+  P    + ++ A
Sbjct: 809 NLSYNQLVGPIPHGSQFDTFQNDSYVGNLRLCGFPLSVKCSGDVAPQPPPF--QEKEDPA 866

Query: 722 SRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRRH 775
           S F+WK A +GY  GLVIGLS+GY+VF+TGKPQWFVR VE +Q+K +RR  +R+
Sbjct: 867 SLFNWKFAMIGYGCGLVIGLSVGYIVFTTGKPQWFVRKVEVEQKKWLRRRTKRN 920

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 375/849 (44%), Positives = 501/849 (59%), Gaps = 87/849 (10%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDL--LASNLTKLSLLHLGATNMSLIKPFSLLNLSST 58
           +  LSKL  LDLS   L  +  T  L  + +NLT+L  L L   NMSLI   + LNLSS+
Sbjct: 152 LHRLSKLVSLDLSGNDLEFDFNTNGLENILANLTELIDLDLSEVNMSLISSEAFLNLSSS 211

Query: 59  MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL------ 112
           +  L      ++GNF  D  R  +L++  L+ N+     +  +NW S LR L+L      
Sbjct: 212 LRTLRFSDCSLRGNFDGDFARFKSLELFDLSYNNDFVLNMTTANWPSSLRSLNLYATGSS 271

Query: 113 -------------LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLS 159
                        +  LD+ F N  G IPTS+GNL     +   +N+ +G +PH +  L 
Sbjct: 272 GELLEHSIGNLKSMEYLDLSFNNLFGLIPTSLGNLESLEYLYLRNNNLSGSVPHTLGNLK 331

Query: 160 YLTTFDLSGNYF------------------------------------------------ 171
            L   DLS N+F                                                
Sbjct: 332 QLKFLDLSSNHFSGQIPDIYADLRKLEFLYLFGNDFSGQLPPSMFKFTELYSLDISFNNL 391

Query: 172 QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPN--SLQDVRLEENEIRGTIPNSTFQL 229
            G +PSWLF LPSL  +DL  N LNGPI  FQ P+  SL+ VRL +N I G IP S F+L
Sbjct: 392 NGTIPSWLFALPSLNGLDLQNNNLNGPIKHFQNPHHSSLKYVRLSDNMIDGPIPISIFEL 451

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
            NLT LDLSSN LSG I +    KLK L+ L+LSNNS LS TS+ +IS  ++L +L  + 
Sbjct: 452 TNLTELDLSSNKLSGIIEWSMLQKLKNLENLNLSNNSQLSLTSNTDIS--FNLTNLWKMT 509

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
            + CNITEFP FL   + L  LDLSNNRI G+ SK  S GWKSL  L+LS NF+T ++ H
Sbjct: 510 LSSCNITEFPYFLSTQQALTALDLSNNRIHGQFSKQKSEGWKSLQFLNLSGNFLTGLDQH 569

Query: 350 PWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
           PW NI TLDL  N +QG + VPPPS +  +VSNN+LSG+IP  IC+L S+Q L LS+N  
Sbjct: 570 PWQNIDTLDLNFNWLQGQLSVPPPSIRQFMVSNNRLSGEIPSFICNLGSIQVLDLSNNGF 629

Query: 410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469
           SG IP CLG     L+ L L+NN+  G I + F N+  L  L+L+ N  EGPLP SL  C
Sbjct: 630 SGLIPKCLGIMMNWLVILDLRNNNFSGKIPEVFGNSGSLVYLNLHGNNFEGPLPPSLGNC 689

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529
             L +++ G N I D+FP WL +L  L+IL+LRSN F+G + + ++  PF +L+I+DLSH
Sbjct: 690 SGLRILDFGNNNIRDTFPHWLEALPNLEILILRSNSFHGEVGDPSVDHPFPSLQILDLSH 749

Query: 530 NEFTGFLPRRIFPSMEAMKNVDEQGRL-EYMGGAFY----------DESITVAMQGHDFQ 578
           N FTGF+P ++  +++++  VD+   L EY+G   +             I++ ++G   +
Sbjct: 750 NHFTGFVPIKLMQNLKSVVYVDKDANLPEYVGDKLFVGRYQYFLVDAPLISLIIKGWGVE 809

Query: 579 LQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 638
           L+KIL +   +D S N F GEIPE +G  KSL VLN SHNSLTG IP+SF N+T +ESLD
Sbjct: 810 LRKILTILTVVDCSSNEFRGEIPEEIGMLKSLVVLNFSHNSLTGRIPLSFANLTNMESLD 869

Query: 639 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 698
           LS NKL G IP QL  ++ LA+LNL++N+L G+IP+G QFNTF NDSY+GN+ LCG PL+
Sbjct: 870 LSSNKLVGEIPSQLTLLSFLAVLNLTFNQLKGQIPQGKQFNTFANDSYVGNLGLCGFPLS 929

Query: 699 VRCSNDGLPEALPLASSDHDETASR--FDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWF 756
            +CS+ G P  L  +   H+E  S+  FDWK A MGY  G+V GLS+GY+V +T KPQW 
Sbjct: 930 QKCSS-GEPPQLSPSPIPHEEEDSQGWFDWKFALMGYGCGMVFGLSMGYIVLATRKPQWI 988

Query: 757 VRMVEGDQQ 765
           VR++E  Q 
Sbjct: 989 VRIIEERQH 997

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 377/862 (43%), Positives = 497/862 (57%), Gaps = 125/862 (14%)

Query: 1   MSHLSKLTHLDLS-FCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
           +SHLS L  LDLS +  L +E  +F  LA NLTKL  LHL   N+S I P SLLNLSS  
Sbjct: 156 ISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRGINVSSILPISLLNLSSLR 215

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL------- 112
           + +DL   ++ G FPDD  +LPNL++L L  N  L+G  PK N S+ +  LDL       
Sbjct: 216 S-MDLSSCQLYGRFPDDDLQLPNLKVLKLKGNHDLSGNFPKFNESNSMLLLDLSSTNFSG 274

Query: 113 -----------------------------------LSVLDIGFCNFTGSIPTSIGNLTRA 137
                                              L  LD+  CNF+GSIP+ +GNLT+ 
Sbjct: 275 ELPSSIGILKSLESLDLSSTKFSGELPSSIGSLKSLESLDLSHCNFSGSIPSVLGNLTQI 334

Query: 138 TEIAFASNHFTGQL---------------------------------------------- 151
           T +  + N F G++                                              
Sbjct: 335 THLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASLDNLTELSFLDLSNNNLEG 394

Query: 152 --PHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQ 209
             P HV  LS L+   LS N   G +PSWLF+LPSL+ +DLS N LNG ID FQ P SL+
Sbjct: 395 IIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLSHNKLNGHIDEFQSP-SLE 453

Query: 210 DVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL-L 268
            + L  NE+ G +P+S F+LVNLT L LSSNNL G +  D F  L+ L +LDLS N L L
Sbjct: 454 SIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMFMNLENLVYLDLSYNILTL 513

Query: 269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISK-SDS 327
           S  S +N +    LP L+ L  + CNI+EFP FL + E L  LDLSNN+I G++ K + +
Sbjct: 514 SNYSHSNCA----LPFLETLLLSSCNISEFPRFLCSQEVLEFLDLSNNKIYGQLPKWAWN 569

Query: 328 PGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG 387
            G ++L   +LS N +T  E  PW N+  LDL +N +QG                     
Sbjct: 570 MGTETLSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQG--------------------- 608

Query: 388 KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASH 447
            +P  IC +S +  L  S+NNLSG IP CLGNFS  L  L L+ N L G+I +TF+  + 
Sbjct: 609 PLPSLICEMSYISVLDFSNNNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNF 668

Query: 448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY 507
           +R+L  N N+LEGPLPRSL  C +L+V+++G N I+D+FP WL +L EL++L+LRSNRF+
Sbjct: 669 IRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFH 728

Query: 508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE-QGRLEYMGGAFYDE 566
           G +  SN  FPF  LRI+DLS N+F+G LP     + +AM NV E + +L+YMG  +Y +
Sbjct: 729 GHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYMGEYYYRD 788

Query: 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 626
           SI   ++G DF+   IL  F  +D S NRF GEI + +G+  SL+ LNLSHN+LTG+IP 
Sbjct: 789 SIMGTIKGFDFEF-VILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPS 847

Query: 627 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSY 686
           S  N+  LESLDLS NKL GRIP +L S+T L +LNLS N L G IPRGNQF+TF N+SY
Sbjct: 848 SLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSY 907

Query: 687 IGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYM 746
            GNI LCG PL+ +C  D  P+       +  E+ + FDWK+  MGY  GLV+GL +G +
Sbjct: 908 SGNIGLCGLPLSKKCVVDEAPQP---PKEEEVESDTGFDWKVILMGYGCGLVVGLFMGCL 964

Query: 747 VFSTGKPQWFVRMVEGDQQKNV 768
           VF T KP+WFV M+EGD+ K V
Sbjct: 965 VFLTRKPKWFVTMIEGDRHKKV 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 365/845 (43%), Positives = 489/845 (57%), Gaps = 102/845 (12%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           +SHL+ L  LDLS          F+ L  NLTKL  LHLG  ++S + P SLLN SS ++
Sbjct: 161 ISHLANLVSLDLSGNGAEFAPHGFNSLLLNLTKLQKLHLGGISISSVFPNSLLNQSSLIS 220

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL-------- 112
            LDL    + G+F D    LP L++L L  N+ L G  P+ + ++ L EL L        
Sbjct: 221 -LDLSDCGLHGSFHDHDIHLPKLEVLNLWGNNALNGNFPRFSENNSLLELVLASTNFSGE 279

Query: 113 ----------LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPH--------- 153
                     L  LD+  C F GSIPTS+ NL + T +    NHF+G++P+         
Sbjct: 280 LPASIGNLKSLKTLDLSICQFLGSIPTSLENLKQITSLNLIGNHFSGKIPNIFNNLRNLI 339

Query: 154 ---------------------------------------HVSGLSY--LTTFDLSGNYFQ 172
                                                  HV+  S+  L+  +L  N F 
Sbjct: 340 SLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGVIHSHVNEFSFSSLSYVNLGYNLFN 399

Query: 173 GGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNL 232
           G +PSWL+TL SL+ +DLS N L G ID FQ  +SL+++ L  NE+ G IP+S F+LVNL
Sbjct: 400 GTIPSWLYTLSSLVVLDLSHNKLTGHIDEFQF-DSLENIYLNMNELHGPIPSSIFKLVNL 458

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
             L LSSNNLS  +  ++F  L+ L  LDLSNN LL  TS  + SI   LP+++ L    
Sbjct: 459 RYLYLSSNNLSEVLETNKFGNLRNLIELDLSNNMLLLTTSGNSNSI---LPNIESL---- 511

Query: 293 CNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM 352
                              DLSNN+I G  S +   G  +L  L+LS N ++  ++ PW 
Sbjct: 512 -------------------DLSNNKISGVWSWN--MGNDTLWYLNLSYNSISGFKMLPWK 550

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
           NI  LDL +N +QG +  PP ST    VS+NKLSG+I   IC  SS++ L LSDNNLSG 
Sbjct: 551 NIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILDLSDNNLSGR 610

Query: 413 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL 472
           +P CLGNFS  L  L+L+ N   G+I  TF   + +R LD N N+L+G +PRSL  C KL
Sbjct: 611 LPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVPRSLIICRKL 670

Query: 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532
           EV+++G N I+D+FP WLG+L +L++LVLRSN F+G + +S I  PF +LRIIDL+HN+F
Sbjct: 671 EVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLRIIDLAHNDF 730

Query: 533 TGFLPRRIFPSMEAMKNVDEQGRL-EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDF 591
            G LP     S++A+ NV+E     +YMG  +Y +SI V ++G + +  KIL  F  +D 
Sbjct: 731 EGDLPELYLRSLKAIMNVNEGNMTRKYMGNNYYQDSIMVTIKGLEIEFVKILNTFTTIDL 790

Query: 592 SRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ 651
           S N+F GEIP+ +GN  SL+ LNLSHN+L G+IP    N+ +LESLDLS NKL GRIP++
Sbjct: 791 SSNKFQGEIPKSIGNLNSLRGLNLSHNNLGGHIPSPLGNLKSLESLDLSSNKLIGRIPQE 850

Query: 652 LLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALP 711
           L S+T L +LNLS N L G IPRGNQF TF NDSY  N  LCG PL+ +C+ D   E L 
Sbjct: 851 LTSLTFLEVLNLSQNNLTGFIPRGNQFETFGNDSYNENSGLCGFPLSKKCTAD---ETLE 907

Query: 712 LASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRA 771
            +   + E    FDWK+  MGY  GLVIGLS+G +VF TGKP+W  RMVE +  K + R+
Sbjct: 908 PSKEANTEFDGGFDWKITLMGYGCGLVIGLSLGCLVFLTGKPEWLTRMVEENIHKTITRS 967

Query: 772 RRRHR 776
           +R  R
Sbjct: 968 KRSTR 972

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 367/846 (43%), Positives = 484/846 (57%), Gaps = 106/846 (12%)

Query: 1   MSHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
           +SHLS L  LDLS+ + T      FD L  NLTKL  LHLG  ++S I P  LLN +S +
Sbjct: 163 ISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISISSIFPKFLLNWAS-L 221

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTG--------------YLPKSNWSS 105
             LDL    + G FPD    LP L++L L  N+ L+G              YL   N+S 
Sbjct: 222 VSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSENNSLTELYLSSKNFSG 281

Query: 106 PL-------RELDLLSVLDIGF---------------------CNFTGSIPTSIGNLTRA 137
            L       + L +L + + GF                     C F+GSIP S+GNLT+ 
Sbjct: 282 ELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKSLMVLAMPGCEFSGSIPASLGNLTQI 341

Query: 138 T---------------------------EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY 170
                                        +  ASN+F+GQLP  +  L+ L     S N+
Sbjct: 342 IALHLDRNHFSGKISKVINFFNNFRNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNF 401

Query: 171 --FQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ 228
             F G +PSWL+T+PSL+ +DLS N L G I  FQ  +SL+ + L  NE+ G+IP S F+
Sbjct: 402 NMFNGTIPSWLYTMPSLVQLDLSHNKLTGHIGEFQF-DSLEYIDLSMNELHGSIPGSIFK 460

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
           L+NL  L LSSNN SG +    F KL+ L  LDLSNN +LS T+S +   K  LP ++ L
Sbjct: 461 LINLRYLFLSSNNFSGVLETSNFGKLRNLTSLDLSNN-MLSLTTSDDS--KSMLPYIESL 517

Query: 289 RFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL 348
                                  DLSNN I G  S +   G  +L  L+LS N ++  E+
Sbjct: 518 -----------------------DLSNNNISGIWSWN--MGKNTLQYLNLSYNLISGFEM 552

Query: 349 HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN 408
            PW N+  LDL +N +QG +  PP ST    VS+NKLSG+I    C  SS++ L LS+NN
Sbjct: 553 LPWKNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMRILDLSNNN 612

Query: 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
           LSG +P CLGNFS  L  L+L  N   G I  TF   + +R+LD N N+LEG LPRSL  
Sbjct: 613 LSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEGLLPRSLII 672

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLS 528
           C KLEV+++G N I+D+FP WLG+L EL++LVLRSN F+G +  S I  PF +LRIIDL+
Sbjct: 673 CRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLRIIDLA 732

Query: 529 HNEFTGFLPRRIFPSMEAMKNVDEQGRL-EYMGGAFYDESITVAMQGHDFQLQKILVMFR 587
           +N+F G LP     S++A  NVDE     +YMG ++Y +S+ V ++G + +  KIL  F 
Sbjct: 733 YNDFEGDLPEMYLRSLKATMNVDEGNMTRKYMGDSYYQDSVMVTIKGLEIEFVKILNTFT 792

Query: 588 AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647
            +D S N+F GEIP+ +GN  SL+ LNLSHNSL G+IP SF+N+  LESLDLS NKL G 
Sbjct: 793 TIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNSLAGHIPSSFKNLKLLESLDLSSNKLIGS 852

Query: 648 IPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLP 707
           IP++L S+T L +LNLS N L G IPRGNQF+TF NDSY  N  LCG PL+ +C  D   
Sbjct: 853 IPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPLSKKCITDEAS 912

Query: 708 EALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKN 767
           E+   A  + D     FDWK+  MGY  GLVIGLS+G ++F TGKP+ FV  +E +  K 
Sbjct: 913 ESSKEADEEFD---GGFDWKITLMGYGCGLVIGLSLGCLIFLTGKPKRFVWFIEENIHKK 969

Query: 768 VRRARR 773
           +RR+ R
Sbjct: 970 IRRSTR 975

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 358/769 (46%), Positives = 463/769 (60%), Gaps = 47/769 (6%)

Query: 7   LTHLDLSFCVLTIEQRTFDLLAS--NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDL 64
           L  LDLSF  L+ E     L AS  NL  L  L L     S     S+ NL S  T LDL
Sbjct: 266 LMELDLSFTNLSGE-----LPASIGNLKSLQTLDLSGCEFSGFIHTSIGNLKSLQT-LDL 319

Query: 65  GGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFT 124
            G    G  P  I  L +LQ L L+ + + +G +P S     +  L  L  LD+  C F 
Sbjct: 320 SGCEFSGFIPTSIGNLKSLQTLDLS-DCEFSGSIPTS-----IGNLKSLQTLDLSNCEFL 373

Query: 125 GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPS 184
           GSIPTSIGNL     +   SN+F+GQLP  +  L+ L     S N F G +PS L+TLPS
Sbjct: 374 GSIPTSIGNLKSLRSLYLFSNNFSGQLPPSIGNLTNLQNLRFSNNLFNGTIPSQLYTLPS 433

Query: 185 LLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG 244
           L+++DLS   L G I  FQ  +SL+ + L  NE+ G IP+S F+L NL  L L SNNLSG
Sbjct: 434 LVNLDLSHKKLTGHIGEFQF-DSLEYIDLSMNELHGPIPSSIFKLANLEFLYLYSNNLSG 492

Query: 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRN 304
            +    F KL+ L  L LSNN L   TS  + SI   LP ++ L                
Sbjct: 493 VLETSNFGKLRNLTLLVLSNNMLSLITSGNSNSI---LPYIERL---------------- 533

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRI 364
                  DLSNN+I G  S +   G  +L+ L+LS N ++  E+ PW N+  LDL +N +
Sbjct: 534 -------DLSNNKISGIWSWN--MGKDTLLYLNLSYNIISGFEMLPWKNMHILDLHSNLL 584

Query: 365 QGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTEL 424
           QG + +PP ST    VS+NKLSG+I P IC +SS+  L LS NNLSG +P CLGNFS +L
Sbjct: 585 QGPLPIPPNSTFFFSVSHNKLSGEISPLICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDL 644

Query: 425 ITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD 484
             L+L+ N   G I  TF   + +R+LD N N+LEG +PRSL    KLEV+++G N I+D
Sbjct: 645 SVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLVPRSLIIYRKLEVLDLGNNKIND 704

Query: 485 SFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSM 544
           +FP WL +L EL++LVLRSN F+G +  S I  PF +LRIIDL+HN+F G LP     S+
Sbjct: 705 TFPHWLRTLPELQVLVLRSNSFHGHIGFSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSL 764

Query: 545 EAMKNVDEQGRL-EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603
           +A+ N+DE     +YMG  +Y +SITV  +G D +L KIL  F  +D S N+F GEIP+ 
Sbjct: 765 KAIMNIDEGNMARKYMGEYYYQDSITVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKS 824

Query: 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 663
           +GN  SL+ LNLSHN+LTG IP SF N+ +LESLDLS N+L G IP+QL S+T L +LNL
Sbjct: 825 IGNLNSLRGLNLSHNNLTGLIPSSFGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNL 884

Query: 664 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASR 723
           S N L G IPRGNQF+TF NDSY  N  LCG PL+ +C  D  PE    A +  D     
Sbjct: 885 SQNHLTGFIPRGNQFDTFGNDSYNENSGLCGFPLSKKCIADETPEPSKEADAKFD---GG 941

Query: 724 FDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRAR 772
           FDWK+  MGY  GLVIGLS+G +VF TGKP+WFV ++E +  K +RR++
Sbjct: 942 FDWKITLMGYGCGLVIGLSLGCLVFLTGKPKWFVWIIEDNIHKKIRRSK 990

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605528|dbj|BAF98594.1| CM0545.410.nc [Lotus japonicus]

 Score =  560 bits (1443), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/780 (43%), Positives = 462/780 (59%), Gaps = 37/780 (4%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           +SHLSKL  LDLS+  + ++  T+  L  N T L  LHL   +MS I+  SL  L++  +
Sbjct: 155 ISHLSKLVSLDLSYLRMRLDPSTWKKLILNTTNLRELHLDLVDMSSIRDTSLSLLTNLSS 214

Query: 61  DLDLGGTR---IKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLD 117
            L         ++GNFP DIF LPNLQ L L+ N QL G LPKSNW +PLR LDL     
Sbjct: 215 SLVSLHLSMNGLQGNFPSDIFCLPNLQELDLSHNDQLRGQLPKSNWRTPLRYLDLSQN-- 272

Query: 118 IGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177
               + +G IP SIGNL    E+  +     GQ+P    GLS L + D S N   G +P 
Sbjct: 273 ----SLSGGIPNSIGNLKSLKELDLSGCELNGQVPLKTVGLSRLRSLDFSDNMINGTIPH 328

Query: 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDL 237
           W ++LP L  +D S N L G I  F L  SL+ + L  N++ G  P+S F+  N+T LDL
Sbjct: 329 WCYSLPFLSYLDFSNNQLTGSISEF-LTYSLEFMYLSNNKLHGKCPDSMFEFENITELDL 387

Query: 238 SSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNI-T 296
           SS +LS  + F QFSKL+ L  L+LS+ S LS    +  S++  LP+L+ L  + CNI +
Sbjct: 388 SSTHLSVFVNFHQFSKLQNLALLNLSHTSFLSINIDS--SVEKCLPNLEYLYLSSCNIDS 445

Query: 297 EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITT 356
            FP FL   +   +LDLSNN+I G+I     P W           F   + LH W+N+  
Sbjct: 446 SFPKFLARLQNPQVLDLSNNKIHGKI-----PKW-----------FHERL-LHSWLNMKL 488

Query: 357 LDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPC 416
           +DL  N+++G + +PP  T+  LVSNN  SG I  +IC+ SSL  L+L+ NNL GTIP C
Sbjct: 489 IDLSFNKLRGELPIPPYGTEYFLVSNNNFSGDIASTICNASSLNILNLAHNNLIGTIPAC 548

Query: 417 LGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVN 476
           LG F + L  L L  N+L G +   F   +   ++ LN N+LEGPLPRSLA C+KLEV++
Sbjct: 549 LGTFPS-LSVLDLHMNNLHGCMPINFFENNAFETIKLNGNRLEGPLPRSLAHCMKLEVLD 607

Query: 477 VGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFL 536
           +G N I D FP WL +LHELK+L +RSNR +G +  S   +PF  LRI+D+S+N F+G L
Sbjct: 608 IGDNNIEDPFPSWLETLHELKVLSVRSNRLHGVITCSRNKYPFPKLRILDVSNNNFSGPL 667

Query: 537 PRRIFPSMEAMKNV-DEQGRLEYMGGA-FYDESITVAMQGHDFQLQKILVMFRAMDFSRN 594
           P   F + + M NV D+Q R  YM    +Y++ + V M+  + +L++IL  F  +D S N
Sbjct: 668 PASCFMNFQGMMNVSDDQSRSLYMDDTMYYNDFVVVVMKDQEMELKRILTAFTTIDLSNN 727

Query: 595 RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS 654
            F G IP+V+G  KSL  LNLSHN + G+IP S  N+  LE LDLS+N+L G IP  L S
Sbjct: 728 MFEGGIPKVIGELKSLIGLNLSHNGIKGSIPHSLSNLRNLECLDLSWNQLTGDIPMALTS 787

Query: 655 VTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLAS 714
           +  L+ LNLS N L G IP G QF+TF N SY GN  LCG PL+  C+ D   E LP AS
Sbjct: 788 LNFLSTLNLSQNHLEGIIPTGRQFDTFGNYSYKGNPMLCGIPLSKSCNKD--EEQLPYAS 845

Query: 715 SDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRR 774
             ++E+   F WK   +GYA G V G+ +GY +F T KPQW   +VEG     V+++  +
Sbjct: 846 FQNEESG--FGWKSVVVGYACGAVFGMLLGYNLFLTAKPQWLTTLVEGLFGIRVKKSNNK 903

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553697|ref|XP_003545189.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/770 (44%), Positives = 464/770 (60%), Gaps = 38/770 (4%)

Query: 1   MSHLSKLTHLDLSF---CVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSS 57
           +SHLSKL  L L      ++ ++  T++ L  N T L  L L   +MS I+  SL  L++
Sbjct: 153 ISHLSKLRSLHLGGDYQSMMRVDPYTWNKLIQNATNLRELSLDFVDMSYIRESSLSLLTN 212

Query: 58  TMTDLDLGG---TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114
             + L       T ++GN   DI  LPNLQ L L+ N  L G LPKSNWS+PL      S
Sbjct: 213 LSSSLISLSLSFTELQGNLSSDILSLPNLQQLDLSFNKDLGGELPKSNWSTPL------S 266

Query: 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG 174
            LD+    F+G+I  SI +L    EI   S +F G +P  +  L+  +  DLS N   G 
Sbjct: 267 YLDLSKTAFSGNISDSIAHLESLNEIYLGSCNFDGLIPSSLFNLTQFSFIDLSFNKLVGP 326

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI 234
           +P W ++LPSLL +DL+ N L G I  F    SL+ + L  N+++G  PNS F+L NLT 
Sbjct: 327 IPYWCYSLPSLLWLDLNNNHLTGSIGEFS-SYSLEFLSLSNNKLQGNFPNSIFELQNLTY 385

Query: 235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN 294
           L LSS +LSG + F QFSK K L +L+LS+NSLLS    + I+  +  P+LK L  + CN
Sbjct: 386 LSLSSTDLSGHLDFHQFSKFKNLFYLELSHNSLLSINFDS-IADYFLSPNLKYLNLSSCN 444

Query: 295 ITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNI 354
           I  FP F+   E+L  LDLS+N I+G I     P W           F   + LH W NI
Sbjct: 445 INSFPKFIAPLEDLVALDLSHNSIRGSI-----PQW-----------FHEKL-LHSWKNI 487

Query: 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIP 414
           + +DL  N++QG + +PP      LVSNN+L+G IP ++C+ SSL+ L+L+ NNL+G IP
Sbjct: 488 SYIDLSFNKLQGDLPIPPNGIHYFLVSNNELTGNIPSAMCNASSLKILNLAHNNLTGPIP 547

Query: 415 PCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV 474
            CLG F + L  L L+ N+L G+I   F+  + L ++ LN N+L+G LPR LA C  LEV
Sbjct: 548 QCLGTFPS-LWALDLQKNNLYGNIPANFSKGNALETIKLNGNQLDGQLPRCLAHCTNLEV 606

Query: 475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG 534
           +++  N I D+FP WL SL EL++L LRSN+F+G +       PF  LRI DLS+N F+G
Sbjct: 607 LDLADNNIEDTFPHWLESLQELQVLSLRSNKFHGVITCFGAKHPFPRLRIFDLSNNNFSG 666

Query: 535 FLPRRIFPSMEAMKNV-DEQGRLEYMGGAF-YDESITVAMQGHDFQLQKILVMFRAMDFS 592
            LP     + + M +V D Q  L+YMG  + Y++S+ V M+G   +L++IL +F  +D S
Sbjct: 667 PLPASYIKNFQGMVSVNDNQTGLKYMGNQYSYNDSVVVVMKGQYMKLERILTIFTTIDLS 726

Query: 593 RNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 652
            N F GE+ +VLG   SLK LNLSHN++TG IP SF N+  LE LDLS+N+L G IP  L
Sbjct: 727 NNMFEGELLKVLGELHSLKGLNLSHNAITGTIPRSFGNLRNLEWLDLSWNQLKGEIPLAL 786

Query: 653 LSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPL 712
           +++  LA+LNLS N+  G IP G QFNTF NDSY GN  LCG PL+  C+ D   +  P 
Sbjct: 787 INLNFLAVLNLSQNQFEGIIPTGGQFNTFGNDSYAGNPMLCGFPLSKSCNKD--EDWPPH 844

Query: 713 ASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEG 762
           ++  H+E  S F WK   +GYA G + G+ +GY VF TGKPQW  R+VEG
Sbjct: 845 STFQHEE--SGFGWKAVAVGYACGFLFGMLLGYNVFMTGKPQWLGRLVEG 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553684|ref|XP_003545183.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/768 (44%), Positives = 460/768 (59%), Gaps = 38/768 (4%)

Query: 1   MSHLSKLTHLDLSF---CVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSS 57
           +SHLSKL  L L      ++ ++  T++ L  N T L  L L   +MS I+  SL  L++
Sbjct: 153 ISHLSKLRSLHLGGDYQSMMRVDPYTWNKLIQNATNLRELSLDFVDMSYIRESSLSLLTN 212

Query: 58  TMTDLDLGG---TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114
             + L       T ++GN   DI  LPNLQ L L+ N  L G LPKSNWS+PL      S
Sbjct: 213 LSSSLISLSLSFTELQGNLSSDILSLPNLQQLDLSFNKDLGGELPKSNWSTPL------S 266

Query: 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG 174
            LD+    F+G+I  SI +L    EI   S +F G +P  +  L+  +  DLS N   G 
Sbjct: 267 YLDLSKTAFSGNISDSIAHLESLNEIYLGSCNFDGLIPSSLFNLTQFSFIDLSFNKLVGP 326

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI 234
           +P W ++LPSLL +DL+ N L G I  F    SL+ + L  N+++G  PNS F+L NLT 
Sbjct: 327 IPYWCYSLPSLLWLDLNNNHLTGSIGEFS-SYSLEFLSLSNNKLQGNFPNSIFELQNLTY 385

Query: 235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN 294
           L LSS +LSG + F QFSK K L +L+LS+NSLLS    + I+  +  P+LK L  + CN
Sbjct: 386 LSLSSTDLSGHLDFHQFSKFKNLFYLELSHNSLLSINFDS-IADYFLSPNLKYLNLSSCN 444

Query: 295 ITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNI 354
           I  FP F+   E+L  LDLS+N I+G I     P W           F   + LH W NI
Sbjct: 445 INSFPKFIAPLEDLVALDLSHNSIRGSI-----PQW-----------FHEKL-LHSWKNI 487

Query: 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIP 414
           + +DL  N++QG + +PP      LVSNN+L+G IP ++C+ SSL+ L+L+ NNL+G IP
Sbjct: 488 SYIDLSFNKLQGDLPIPPNGIHYFLVSNNELTGNIPSAMCNASSLKILNLAHNNLTGPIP 547

Query: 415 PCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV 474
            CLG F + L  L L+ N+L G+I   F+  + L ++ LN N+L+G LPR LA C  LEV
Sbjct: 548 QCLGTFPS-LWALDLQKNNLYGNIPANFSKGNALETIKLNGNQLDGQLPRCLAHCTNLEV 606

Query: 475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG 534
           +++  N I D+FP WL SL EL++L LRSN+F+G +       PF  LRI D+S+N F+G
Sbjct: 607 LDLADNNIKDTFPHWLESLQELQVLSLRSNKFHGVITCFGAKHPFPRLRIFDVSNNSFSG 666

Query: 535 FLPRRIFPSMEAMKNV-DEQGRLEYMGGA-FYDESITVAMQGHDFQLQKILVMFRAMDFS 592
            LP     + + M +V D Q   +YMG   FY++S+ V M+G   +LQ+IL +F  +D S
Sbjct: 667 SLPASYIKNFQGMMSVNDNQTGSKYMGNQYFYNDSVVVVMKGQYMELQRILTIFTTIDLS 726

Query: 593 RNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 652
            N F GE+ +VLG   SLK LNLSHN++TG IP SF N+  LE LDLS+N+L G IP  L
Sbjct: 727 NNMFEGELLKVLGELHSLKGLNLSHNAITGTIPRSFGNLRNLEWLDLSWNQLKGEIPVSL 786

Query: 653 LSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPL 712
           +++  LA+LNLS N+  G IP G QFNTF NDSY GN  LCG PL+  C+ D   E  P 
Sbjct: 787 INLNFLAVLNLSQNQFEGIIPTGGQFNTFGNDSYAGNPMLCGFPLSKSCNKD---EDWPP 843

Query: 713 ASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMV 760
            S+ H E  S F WK   +GYA G + G+ +GY VF TGKPQW  R+V
Sbjct: 844 HSTFHIE-ESGFGWKAVAVGYACGFLFGMLLGYNVFMTGKPQWLARLV 890

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 352/821 (42%), Positives = 477/821 (58%), Gaps = 66/821 (8%)

Query: 4   LSKLTHLDLSF-CVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
           LSKL  LDLS    L +++     L  NLT L  LHL   N+S   P+ L +LSS  +  
Sbjct: 170 LSKLVFLDLSANPKLQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYELASLSSLTSLF 229

Query: 63  DLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL---------- 112
             G   + G FP  IF+LP+LQ L +  N  L  YLP+   +SPL+ LDL          
Sbjct: 230 L-GECGLHGEFPMKIFQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDLAGTSFSGELP 288

Query: 113 --------LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTF 164
                   L+ LDI  CNFTGS+P+S+G+LT+   +  ++NHF+GQ+P  ++ L+ L   
Sbjct: 289 TSIGRLGSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQIPSSMANLTQLIYL 348

Query: 165 DLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPN--SLQDVRLEENEIRGTI 222
            LS N F  G  SWL     L  + L++  L G I  F L N   L  + L +N++ G I
Sbjct: 349 SLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEIP-FSLVNMSQLNILSLSDNQLSGQI 407

Query: 223 PNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNN--SLLSFTSSANISIKY 280
           P+S F+LVNL  L L SN L+G +     SKLK L +L LS+N  S LS+T +       
Sbjct: 408 PSSLFELVNLQGLYLLSNYLNGTVELQLLSKLKNLIYLQLSDNRLSFLSYTRT-----NA 462

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW------KSLI 334
           +LP  K L    CN+TEFP FL+N  EL ++ LS N+I G I     P W      ++L+
Sbjct: 463 TLPKFKHLGLGSCNLTEFPDFLQNQHELEIITLSENKIHGPI-----PKWVWNISKETLV 517

Query: 335 DLDLSNNFMTHIE----LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP 390
            L+LS NF+T  +    + PW  + TL L +N +QG + VPPPST   LVS NKL+G+I 
Sbjct: 518 TLELSENFLTGFDQRPFVLPWSKLHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEIS 577

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
           P IC+++SL+ L LS NNLSG IP CL NFS  L  L L +NSL+G I +    + +L  
Sbjct: 578 PLICNMTSLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNV 637

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           +DL  N+ +G +PRSL  C  LE + +G N I+D FP WLG+L +L++L+LRSNRF+G +
Sbjct: 638 IDLGDNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAI 697

Query: 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM----------- 559
            + +  F F  LRIIDLS NEF G LP   F + +AMK  D    L YM           
Sbjct: 698 GSWHTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQISPMIDLKNN 757

Query: 560 ---GGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLS 616
               G  Y  S+T+  +G     ++IL  F A+DFS N F G+IP  +G+ K + +LNL 
Sbjct: 758 VMITGYMY--SMTMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLG 815

Query: 617 HNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGN 676
            N LTG+IP S  N+T LESLDLS NKL G IP QL  +T L   N+S+N L G IP+G 
Sbjct: 816 GNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGK 875

Query: 677 QFNTFENDSYIGNIHLCGEPLTVRC-SNDGLPEALPLASSDHDETASRFDWKMAKMGYAS 735
           QF TFEN S+ GN+ LCG PL+  C S++ LP   P +SS    + ++FDWK+  MGY S
Sbjct: 876 QFATFENASFDGNLGLCGSPLSRECGSSEALP---PTSSSSKQGSTTKFDWKIVLMGYGS 932

Query: 736 GLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVRRARRRHR 776
           GL+IG+SIGY   ++ K +WFV+ +   Q+K  R+  R  R
Sbjct: 933 GLLIGVSIGY-CLTSWKHEWFVKTIGKRQRKWTRKEGRGQR 972

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.548	0.486	0.382	7.3e-105
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.873	0.718	0.354	3e-101
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.958	0.730	0.342	4.9e-101
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.880	0.687	0.351	5.8e-98
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.887	0.852	0.346	1.5e-97
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.891	0.797	0.343	2e-97
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.938	0.760	0.339	4.7e-96
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.889	0.798	0.342	5.9e-96
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.876	0.858	0.344	9.7e-96
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.900	0.873	0.345	3.3e-95

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
 Identities = 172/450 (38%), Positives = 248/450 (55%)

Query:   336 LDLSNNFMTHIELHPWM--NITTLDLRNNRIQG--------SILVPPPSTKVLLVSNNKL 385
             LD+SNN +   ++  W+   +  + + NN   G          +VP PS K    SNN  
Sbjct:   433 LDISNNKIKG-QVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNF 491

Query:   386 SGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 445
             SGKIP                    G IPPC+G F + L  L+L+ N L G +  T   +
Sbjct:   492 SGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKS 551

Query:   446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505
               LRSLD++ N+LEG LPRSL     LEV+NV  N I+D+FP WL SL +L++LVLRSN 
Sbjct:   552 --LRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNA 609

Query:   506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE-QGRL--EYMGGA 562
             F+G +  +   FP   LRIID+S N F G LP   F     M ++++ + R   +YMG  
Sbjct:   610 FHGRIHKTR--FP--KLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSG 665

Query:   563 FYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG 622
             +Y +S+ +  +G + +L +IL ++ A+DFS N+F GEIP  +G  K L +LNLS N  TG
Sbjct:   666 YYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTG 725

Query:   623 NIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFE 682
             +IP S  N+  LESLD+S NKL G IP++             +N+L G++P G QF T  
Sbjct:   726 HIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQS 785

Query:   683 NDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLS 742
               S+  N+ LCG PL   C    + E  P   S+  E+     W  A +G+  G+V+GL+
Sbjct:   786 ASSFEENLGLCGRPLE-ECRV--VHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLT 842

Query:   743 IGYMVFSTGKPQWFVRMVEGDQQKNVRRAR 772
             IG++V S+ KP+WF +++  +  +  RR R
Sbjct:   843 IGHIVLSS-KPRWFFKVLYINNSRRRRRTR 871

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 264/745 (35%), Positives = 381/745 (51%)

Query:    49 PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR 108
             P S+ NLS+ +T L L      G  P  I  L  L  L+L+ N+   G +P S       
Sbjct:   214 PSSIGNLSN-LTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNN-FVGEIPSS-----FG 266

Query:   109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSG 168
              L+ L VL +     +G++P S+ NLTR + +  + N FTG +P+++S LS L  F+ S 
Sbjct:   267 NLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASN 326

Query:   169 NYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQL--PNSLQDVRLEENEIRGTIPNST 226
             N F G +PS LF +P L+ +DLS N LNG +    +  P++LQ + +  N   GTIP S 
Sbjct:   327 NAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSL 386

Query:   227 FQLVNLTILDLSS-NNLSGAIRFDQFSKLK------------------------KXXXXX 261
              + VNLT+ DLS  N     + F  FS LK                        K     
Sbjct:   387 SRFVNLTLFDLSHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSL 446

Query:   262 XXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGR 321
                         +++S      S++ L  + C IT+FP  LR   EL  LD+SNN+I+G+
Sbjct:   447 DISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQ 506

Query:   322 ISKSDSPGW----KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKV 377
             +     PGW     +L  L+LSNN     E             +++  G   V  PS   
Sbjct:   507 V-----PGWLWTLPNLFYLNLSNNTFISFE------------SSSKKHGLSSVRKPSMIH 549

Query:   378 LLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGH 437
             L  SNN  +GKIP                    G+IP C+    + L  L+L+ N+L G 
Sbjct:   550 LFASNNNFTGKIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGG 609

Query:   438 IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELK 497
             +      +  LRSLD+  N L G LPRSL +   LEV+NV  N I+D+FP WL SL +L+
Sbjct:   610 LPKHIFES--LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQ 667

Query:   498 ILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV---DEQG 554
             +LVLRSN F+GP+  +  TFP   LRIID+SHN F G LP   F    AM ++   ++Q 
Sbjct:   668 VLVLRSNAFHGPIHEA--TFP--ELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQS 723

Query:   555 RLEYMG-GAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVL 613
               +YMG G +Y +S+ +  +G   +L +IL ++ A+DFS N+F GEIP+ +G  K L VL
Sbjct:   724 NEKYMGSGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVL 783

Query:   614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIP 673
             NLS+N+  G+IP S  N+TALESLD+S NKL G IP++             +N+L G +P
Sbjct:   784 NLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVP 843

Query:   674 RGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSD-HDETASRFDWKMAKMG 732
              G QF      ++  N+ L G  L   C +   P +    +++  +E      W  A +G
Sbjct:   844 GGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEEEISWIAAAIG 903

Query:   733 YASGLVIGLSIGYMVFSTGKPQWFV 757
             +  G+V GL+IGY++ S  KP+WF+
Sbjct:   904 FIPGIVFGLTIGYILVSY-KPEWFM 927

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1002 (357.8 bits), Expect = 4.9e-101, P = 4.9e-101
 Identities = 272/794 (34%), Positives = 399/794 (50%)

Query:     2 SHLSKLTHLDLSFCVLTIEQRTFDXXXXXXXXXXXXXXGATNMSLIKPFSLLNLSSTMTD 61
             S++  L  L+L+ C L  E   F               G  N +L     + + ++++  
Sbjct:   248 SNIRSLRSLNLNGCNLFGE---FPSSILLIPNLQSIDLG-NNPNLRGNLPVFHENNSLLK 303

Query:    62 LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
             L +  T   G  PD I  L NL  L L++ S  +G +P S     L  L  LS L +   
Sbjct:   304 LTILYTSFSGAIPDSISSLKNLTSLTLSV-SYFSGKIPFS-----LGNLSHLSHLSLSSN 357

Query:   122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
             N  G IP+SIGNL + T      N  +G LP  +S L+ L T  LS N F G +P  +  
Sbjct:   358 NLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSISQ 417

Query:   182 LPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRGTIP-NSTFQLVNLTILDLS 238
             L  L       N   G I   L ++P SL  + L  N++   +   + F L NL    + 
Sbjct:   418 LSKLKFFFADDNPFIGAILSPLLKIP-SLTRIHLSYNQLNDLVGIENIFMLPNLETFYIY 476

Query:   239 SNNLSGAIRFDQ--FSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPS-LKVLRFAYCNI 295
               N +     D   FS LK+                  NI+  +  PS L+ L    CNI
Sbjct:   477 HYNYTKVRPLDLNVFSSLKQLGTLYISRIPISTT----NITSDF--PSNLEYLSLRSCNI 530

Query:   296 TEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLIDLDLSNNFMT--HIELH 349
             T+FP F+R    L +LDLSNN+I+G++     P W     +L  +DLSNN ++  H+ + 
Sbjct:   531 TDFPEFIRKGRNLQILDLSNNKIKGQV-----PDWLWRMPTLNSVDLSNNSLSGFHVSVK 585

Query:   350 --PWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXX 407
               P   +T++DL +N  QG + +P  S +    SNN  +GKIP                 
Sbjct:   586 ASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNN 645

Query:   408 XXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA 467
                G++P CL    + L  L L+NNSL G + + F NA+ LRSLD++ N++EG LP SL 
Sbjct:   646 NLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLT 705

Query:   468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN-SNITFPFQALRIID 526
              C  LEV+NVG N I+D FP  L SL +L++LVL SN+F+G L N   + F F  L+IID
Sbjct:   706 GCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIID 765

Query:   527 LSHNEFTGFLPRRIFPSMEAMKNV-DEQGRLEYM------GGAF-YDESITVAMQGHDFQ 578
             +SHN+F G LP   F +  AM +  D     EY+      G +  Y  S+ +  +G   +
Sbjct:   766 VSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSME 825

Query:   579 LQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 638
             ++++L ++ A+D S N+ HG+IP+ +G  K L++LN+S N  TG+IP S  N+  LESLD
Sbjct:   826 MERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLD 885

Query:   639 LSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 698
             +S N + G IP +             +N+L G IP+G QF   +  SY GN  L G  L 
Sbjct:   886 ISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLE 945

Query:   699 VRCSN--DGLP-EALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQW 755
               C +  +  P +  PL + + +E  S F W  A +G+A G+V GL++GY+V S  K QW
Sbjct:   946 NVCGHIKESTPTQTEPLETKEEEEEES-FSWIAAGLGFAPGVVFGLAMGYIVVSY-KHQW 1003

Query:   756 FVRMVEGDQQKNVR 769
             F++     +Q+N R
Sbjct:  1004 FMKTFGRSKQQNTR 1017

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 254/723 (35%), Positives = 361/723 (49%)

Query:    56 SSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSV 115
             ++++  L +  T   G  P+ I  L +L  L L   S  +G +P S     LR L  LS 
Sbjct:   277 NNSLLKLSIYNTSFSGTIPNSISNLKHLTSLKLQ-QSAFSGRIPSS-----LRSLSHLSN 330

Query:   116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
             L +   NF G IP+S+ NL + T    + N+  G  P  +  L+ L   D+  N+F G +
Sbjct:   331 LVLSENNFVGEIPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFL 390

Query:   176 PSWLFTLPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLV-NL 232
             P  +  L +L       N   G  P  LF + +SL  + L  N++  T       L+ NL
Sbjct:   391 PPTISQLSNLEFFSACDNSFTGSIPSSLFNI-SSLTTLGLSYNQLNDTTNIKNISLLHNL 449

Query:   233 TILDLSSNNLSGA-IRFDQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPS-LKVLRF 290
               L L +NN   + +  D F  LK+                  NI+      S L+ L  
Sbjct:   450 QRLLLDNNNFKASQVDLDVFLSLKRLVSLALSGIPLSTT----NITSDSEFSSHLEYLEL 505

Query:   291 AYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLIDLDLSNN----F 342
             + CNI EFP F+RN   L  +DLSNN I+G++     P W      L  +DLSNN    F
Sbjct:   506 SGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQV-----PNWLWRLPELSTVDLSNNSLIGF 560

Query:   343 MTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXX 402
                ++      I  LDL +N  QG + +PP   +  L S N  +G IPP           
Sbjct:   561 NGSLKALSGSKIVMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPLIL 620

Query:   403 XXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL 462
                     G IP CL    + L  L+L+NNSL+G + + F NA  L SLD++ N LEG L
Sbjct:   621 DLSNNNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKL 680

Query:   463 PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN-SNITFPFQA 521
             P SLA C  LE++NV  N I+D+FP WL SL +L++LVLRSN F G L N   + F F  
Sbjct:   681 PASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPL 740

Query:   522 LRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAF---YDESITVAMQGHDFQ 578
             LRI D+SHN+F G LP   F +  A+   + +  L+Y+G      Y  S+ +  +G   +
Sbjct:   741 LRITDVSHNDFVGTLPSDYFMNWTAISKSETE--LQYIGDPEDYGYYTSLVLMNKGVSME 798

Query:   579 LQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD 638
             +Q+IL  +  +DF+ N+  G+IPE +G  K L VLNLS N+ TG+IP S  N+T LESLD
Sbjct:   799 MQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLD 858

Query:   639 LSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 698
             +S NK+ G IP +             +N+L G IP+G QF+     SY GN  + G  L 
Sbjct:   859 ISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLK 918

Query:   699 VRCSNDGLPE----ALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQ 754
               C +   P      LP +SS   E      W  A +G+A G+V GL++GY + ++ K +
Sbjct:   919 DVCGDIHAPRPPQAVLPHSSSSSSEEDELISWIAACLGFAPGMVFGLTMGY-IMTSHKHE 977

Query:   755 WFV 757
             WF+
Sbjct:   978 WFM 980

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 255/735 (34%), Positives = 373/735 (50%)

Query:    54 NLSSTMTDLDLGGTRIKGNF-PDD-IFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD 111
             N +  +T L L    + G+  P+  +F L +L+ L L+ N+  +  LP     S    L+
Sbjct:    68 NKTGVVTKLQLPSGCLHGSMKPNSSLFGLQHLRYLNLSNNNFTSASLP-----SGFGNLN 122

Query:   112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF 171
              L VL +    F G +P+S  NL++   +  + N  TG  P  V  L+ L+   LS N+F
Sbjct:   123 RLEVLYLSSNGFLGQVPSSFSNLSQLNILDLSHNELTGSFPF-VQNLTKLSILVLSYNHF 181

Query:   172 QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLE-----ENEIRGTIPNST 226
              G +PS L TLP L S+DL +N L G I+    PNS    RLE      N   G I    
Sbjct:   182 SGTIPSSLLTLPFLSSLDLRENYLTGSIEA---PNSSTSSRLEFMYLGNNHFEGQILEPI 238

Query:   227 FQLVNLTILDLSSNNLSGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLK 286
              +L+NL  LDLS    S  I  + FS  K                  ++  I  +L +L 
Sbjct:   239 SKLINLKHLDLSFLKTSYPIDLNLFSSFKSLVRLVLSGNSLLATSITSDSKIPLNLENLV 298

Query:   287 VLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLIDLDLSNNF 342
             +L    C + EFP  L+N  +L  +DLSNN+I+G++     P W      L  ++L NN 
Sbjct:   299 LLS---CGLIEFPTILKNLTKLEHIDLSNNKIKGKV-----PEWFWNLPRLRRVNLFNNL 350

Query:   343 MTHIELHPWM----NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXX 398
              T +E    +    ++  LDL  N  +G    PP S  +L   NN  +G IP        
Sbjct:   351 FTDLEGSEEVLVNSSVRLLDLAYNHFRGPFPKPPLSINLLSAWNNSFTGNIPLETCNRSS 410

Query:   399 XXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
                         G IP CL +F   LI ++L+ N+LEG + D F++ + LR+LD+  N+L
Sbjct:   411 LAILDLSYNNLTGPIPRCLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQL 470

Query:   459 EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI-TF 517
              G LPRSL  C  L  V+V  N I D+FP WL +L +L+ L LRSN+F+GP+   +    
Sbjct:   471 TGKLPRSLLNCSMLRFVSVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPL 530

Query:   518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMK-NVDEQGRLEYMGGA-----FYDESITVA 571
              F  LRI+++S N FTG LP   F + EA    ++E GR+ YMG        Y++++ + 
Sbjct:   531 AFPKLRILEISDNNFTGSLPPNYFVNWEASSLQMNEDGRI-YMGDYNNPYYIYEDTVDLQ 589

Query:   572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 631
              +G   +  K+L  +  +DFS N+  G+IPE +G  K+L  LNLS+N+ TG+IP+S  N+
Sbjct:   590 YKGLFMEQGKVLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANV 649

Query:   632 TALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIH 691
             T LESLDLS N+L G IP               +N+L G IP+G Q       S+ GN  
Sbjct:   650 TELESLDLSRNQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAG 709

Query:   692 LCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTG 751
             LCG PL   C     P+  P    D DE     +WK   +GY  GL++GL + +++ S  
Sbjct:   710 LCGLPLQGSCFAPPTPQ--P-KEEDEDEEV--LNWKAVVIGYWPGLLLGLIMAHVIASF- 763

Query:   752 KPQWFVRMVEGDQQK 766
             KP+W V++V  +++K
Sbjct:   764 KPKWLVKIVGPEKRK 778

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 264/768 (34%), Positives = 388/768 (50%)

Query:    49 PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLN-SQLTGYLPKSNWSSPL 107
             P  + N S  +T LDL      G  P  I  L   Q+ FL+L+ ++  G +P   +   +
Sbjct:   136 PSCIENFSH-LTTLDLSKNYFSGGIPSSIGNLS--QLTFLDLSGNEFVGEMP---FFGNM 189

Query:   108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS 167
              +L  L V D    + TG  P S+ NL   ++++ + N FTG LP ++S LS L  F+  
Sbjct:   190 NQLTNLYV-DSN--DLTGIFPLSLLNLKHLSDLSLSRNQFTGTLPSNMSSLSNLEYFEAW 246

Query:   168 GNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQL--PNSLQDVRLEENEIRGTIPNS 225
             GN F G +PS LFT+ SL SI+L  N LNG ++   +  P++L  + +  N   G IP S
Sbjct:   247 GNAFTGTLPSSLFTIASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISNNNFIGPIPKS 306

Query:   226 TFQLVNLTILDLSSNNLSGAIRFDQFSKLKKX-----XXXXXXXXXXXXXXXXANISIKY 280
               + +NL  LDLS  N  G + F  F+ LK                       ++++  Y
Sbjct:   307 ISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNALFSSHLNSIY 366

Query:   281 SL-------------------PS--LKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
             S+                   P+  +  L  + C ITEFP  LR+  ++  LD+SNN+I+
Sbjct:   367 SMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGITEFPELLRSQHKMTNLDISNNKIK 426

Query:   320 GRISKSDSPGW----KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPST 375
             G++     PGW      LI +DLSNN  T  E            R+    G  L+  PS 
Sbjct:   427 GQV-----PGWLWTLPKLIFVDLSNNIFTGFE------------RSTE-HGLSLITKPSM 468

Query:   376 KVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLE 435
             + L+ SNN  +GKIP                    G+IPPC+GN  + L  L+L+ N L 
Sbjct:   469 QYLVGSNNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLG 528

Query:   436 GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHE 495
             G +  +   +  LRSLD+  N+L G LPRS  +   LEV+NV  N I+D+FP WL SL +
Sbjct:   529 GGLPRSIFKS--LRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKK 586

Query:   496 LKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV---DE 552
             L++LVLRSN F+GP+ +++    F  LRII+LSHN+F+G LP   F +  AM ++   ++
Sbjct:   587 LQVLVLRSNAFHGPIHHAS----FHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATED 642

Query:   553 QGRLEYMGGAF--YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL 610
             + + +YMG +F  Y +S+ +  +G + +L +IL ++ A+DFS N+  GEIP  +G  K L
Sbjct:   643 RSQEKYMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKEL 702

Query:   611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWG 670
              VLNLS N+ TG+IP S  N+  LESLD+S NKL G IP++             +N+L G
Sbjct:   703 HVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGG 762

Query:   671 RIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSD-HDETASRFDWKMA 729
              +P G QF      S+  N  L G  L   C +   P        +  +E    F W  A
Sbjct:   763 LVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDREVFSWIAA 822

Query:   730 KMGYASGLVIGLSIGY-MVFSTGKPQWFVRMVEGDQQKNVRRARRRHR 776
              +G+  G+  GL+I Y +VF   KP WF+    G  Q +    R R +
Sbjct:   823 AIGFGPGIAFGLTIRYILVFY--KPDWFMHTF-GHLQPSAHEKRLRRK 867

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 275/810 (33%), Positives = 402/810 (49%)

Query:     3 HLSKLTHLDLSFCVLTIEQRTFDXXXXXXXXXXXXXXGATNMSLIKPFSLLNLSSTMTDL 62
             +LS LT LDLS+     +   F                +   S   P S+ NLS+ +T L
Sbjct:   191 NLSHLTFLDLSYNRFFGQ---FPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSN-LTTL 246

Query:    63 DLGGTRIKGNFPDDIFRLPNLQILFLNL-NSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
             DL      G  P  I  L   Q+ FL L ++   G +P S  +  L +L  L V D    
Sbjct:   247 DLSNNNFSGQIPSFIGNLS--QLTFLGLFSNNFVGEIPSSFGN--LNQLTRLYVDDN--- 299

Query:   122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
               +G+ P  + NLT  + ++ ++N FTG LP +++ LS L  FD S N F G  PS+LFT
Sbjct:   300 KLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFT 359

Query:   182 LPSLLSIDLSKNMLNGPIDLFQL--PNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
             +PSL  I L+ N L G ++   +  P++L ++ +  N   G IP+S  +LV L  LD+S 
Sbjct:   360 IPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISH 419

Query:   240 NNLSGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXANISIKY------------------- 280
              N  G + F  FS LK                   N  + Y                   
Sbjct:   420 LNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDL-NYFLSYFKRLLLLDLSGNHVSATNK 478

Query:   281 ---SLPSLKVLRFAY---CNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLI 334
                S P  ++++  Y   C ITEFP F+R   EL  LD+SNN+I+G++     P W    
Sbjct:   479 SSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQV-----PDW---- 529

Query:   335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQG--SILVPPPSTKVLLVSNNKLSGKIPPX 392
                     +  + +  ++N++     NN + G      P PS   LL SNN   GKIP  
Sbjct:   530 --------LWRLPILYYVNLS-----NNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSF 576

Query:   393 XXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452
                               G+IP C+G+  + L  L+L+ N L G +         LRSLD
Sbjct:   577 ICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEI--LRSLD 634

Query:   453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
             +  N+L G LPRSL+    LEV+NV  N I+D+FP WL SL +L++LVLRSN F+GP+  
Sbjct:   635 VGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHE 694

Query:   513 SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV---DEQGRLEYMG-GAFYDESI 568
             +  TFP   LRIID+SHN F G LP   F    AM ++   ++Q   +YMG G +Y +S+
Sbjct:   695 A--TFP--ELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSM 750

Query:   569 TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
              +  +G   +L +IL ++ A+DFS NRF GEIP+ +G  K L VL+LS+N+ +G++P S 
Sbjct:   751 VLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSM 810

Query:   629 ENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIG 688
              N+TALESLD+S NKL G IP++             +N+L G +P G QF T    ++  
Sbjct:   811 GNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFED 870

Query:   689 NIHLCGEPLTVRCSNDGLPEALPLASSDH--DETASRFDWKMAKMGYASGLVIGLSIGYM 746
             N+ L G  L   C +   P +     +    +E      W  A +G+  G+  GL  GY+
Sbjct:   871 NLGLFGSSLEEVCRDIHTPASHQQFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGYI 930

Query:   747 VFSTGKPQWFVRMVEGDQQKNVRRARRRHR 776
             + S  KP+WF+   +    +N RR ++RH+
Sbjct:   931 LVSY-KPEWFMNPFD----RNNRR-QKRHK 954

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 254/742 (34%), Positives = 376/742 (50%)

Query:    46 LIKPFSLLNLSSTMTDLDLGGTRIKGNF-PDD-IFRLPNLQILFLNLNSQLTGYLPKSNW 103
             L+  F L+     +  LDL      G   P++ +F L +L+ L L  N+ ++  LP    
Sbjct:   146 LMGSFPLVRNLGKLAVLDLSDNHFSGTLNPNNSLFELHSLRYLNLAFNN-ISSSLP---- 200

Query:   104 SSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTT 163
              S    L+ L VL + F  F+G    +I NLTR T++   +N  TG  P  V  L+ L+ 
Sbjct:   201 -SKFGNLNKLEVLSLSFNGFSGQCFPTISNLTRITQLYLHNNELTGSFPL-VQNLTKLSF 258

Query:   164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE-----NEI 218
               LS N F G +PS+LFT PSL ++DL +N L+G I++   PNS    +LE      N +
Sbjct:   259 LGLSDNLFSGTIPSYLFTFPSLSTLDLRENDLSGSIEV---PNSSTSSKLEIMYLGFNHL 315

Query:   219 RGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXANISI 278
              G I     +L+NL  LDLS  N S  I  +  S LK                  ++  I
Sbjct:   316 EGKILEPISKLINLKRLDLSFLNTSYPIDLNLLSPLKSLSYLDFSGNSLSPASLSSSSYI 375

Query:   279 KYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLI 334
               S+ S+ VL  + C I EFP  L++ + L  +D+++N+I+G+I     P W      L 
Sbjct:   376 PLSMESI-VL--SLCGIREFPNILKHLQNLIHIDITSNQIKGKI-----PEWLWTLPQLS 427

Query:   335 DLDLSNN----FMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP 390
              +D+SNN    F    E+   +++  L L  N  +G++   P S       +N  +G+IP
Sbjct:   428 FVDISNNSFNGFQGSAEVFVNLSVRILMLDANNFEGALPTLPLSIIGFSAIHNSFTGEIP 487

Query:   391 PXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
                                 G IP CL NF    + ++L+ N LEG I DTF   S L+S
Sbjct:   488 LSICNRTSLTMVDLSYNNFTGPIPQCLSNF----MFVNLRKNDLEGSIPDTFYTDSSLKS 543

Query:   451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
             LD+  N+L G LPRSL  C  L  ++V  N + D+FP WL +L  L++L LRSN+FYGP+
Sbjct:   544 LDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPI 603

Query:   511 CNSNI-TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMK-NVDEQGRL----EYMGGA-- 562
                +     F  LRI +++ N FTG LP   F + +A     +E G L    EY   A  
Sbjct:   604 SPPHQGPLGFPELRIFEIADNMFTGSLPPSFFVNWKASALTKNEDGGLYMVYEYDKAANS 663

Query:   563 ----FYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHN 618
                  Y ++I +  +G   + +++L  + A+DFS NR  G+IPE +G  K+L  LNLS+N
Sbjct:   664 PVRYTYTDTIDLQYKGLHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNN 723

Query:   619 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQF 678
             + TG+IP+SF N+  LESLD+S N+L G IP               +N+L G IP+G Q 
Sbjct:   724 AFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQI 783

Query:   679 NTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLV 738
                   S+ GN  LCG PL   C +  +P   P    + +E     +WK   +GYA GL+
Sbjct:   784 TGQIKSSFEGNAGLCGLPLQETCFDSSVPPIQP--KQEDEEKGEVINWKAVAIGYAPGLL 841

Query:   739 IGLSIGYMVFSTGKPQWFVRMV 760
              GL+I +++ S  KP+W V+++
Sbjct:   842 FGLAIAHLIASY-KPEWLVKII 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 250/726 (34%), Positives = 370/726 (50%)

Query:    56 SSTMTDLDLGG---TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112
             +  + +L LG    T +K N    +FR  +L+ L L+ N   +  +P     S    L  
Sbjct:    88 TGVVKELSLGRQCLTSLKAN--SSLFRFQHLRYLDLSENHFDSSPIP-----SGFGRLTY 140

Query:   113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ 172
             L  LD+    F G +P+SI NL+R T +  + N  TG +P+ +  L+ L   DLS N F 
Sbjct:   141 LESLDLSKNGFIGEVPSSISNLSRLTNLDLSYNKLTGGIPN-LHSLTLLENIDLSYNKFS 199

Query:   173 GGVPSWLFTLPSLLSIDLSKNMLNGPIDL--FQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
             G +PS+LFT+P L+S++L +N L+ P++   +   + L  + +  N +   I     +L 
Sbjct:   200 GAIPSYLFTMPFLVSLNLRQNHLSDPLENINYSATSKLLILDMAYNLMSHRILEPISKLA 259

Query:   231 NLTILDLSSNNLSGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRF 290
             NL  +DLS         FD F   K                  +         +L  L  
Sbjct:   260 NLIQIDLSFQKTPYTFNFD-FLLFKSLVRLDLSGNSVSVVGTGSE--------NLTHLDL 310

Query:   291 AYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK--SLIDLDLSNNFMTHIEL 348
             + CNITEFP F+++ + L+ LD+SNNRI+G++ +     W   S++ ++LS N    +E 
Sbjct:   311 SSCNITEFPMFIKDLQRLWWLDISNNRIKGKVPELL---WTLPSMLHVNLSRNSFDSLEG 367

Query:   349 HPWM----NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXX 404
              P +    +I+ LDL +N  +GS  + PP   ++  SNN  +G IP              
Sbjct:   368 TPKIILNSSISELDLSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLSLLDL 427

Query:   405 XXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPR 464
                   GTIP CL N S  L  L L NNSL G + D       L  LD+  N++ G LPR
Sbjct:   428 SNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLPDI---EDRLVLLDVGHNQISGKLPR 484

Query:   465 SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRI 524
             SL  C  L+ +NV  N I+D+FP WL +L  L+I+VLRSNRF+GP+ +  ++  F ALRI
Sbjct:   485 SLVNCTTLKFLNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRI 544

Query:   525 IDLSHNEFTGFLPRRIFPSMEA-MKNVDEQGRL-EYMGGAF--YDE------SITVAMQG 574
             ID+S N F G LP+  F +  A + N  +  R  EY G     Y+       SI + ++G
Sbjct:   545 IDISRNSFNGSLPQNYFANWSAPLVNTPQGYRWPEYTGDEHSKYETPLWSYPSIHLRIKG 604

Query:   575 HDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL 634
                +L KI   + ++DFS N F G+IPE +G+ KSL VL+LS+NS TG IP S   +  L
Sbjct:   605 RSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLKQL 664

Query:   635 ESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCG 694
             ESLDLS N++ G IP++             +NRL G+IP+  Q       S+ GNI+LCG
Sbjct:   665 ESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINLCG 724

Query:   695 EPLTVRC-SNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKP 753
              PL   C   +G+P        +  +     +WK A +GY  G++ GL+IG   F+  KP
Sbjct:   725 LPLQESCLRGNGVPSTPHTQEQELPKQEHALNWKAAAIGYGPGVLFGLAIG-QAFARYKP 783

Query:   754 QWFVRM 759
               F ++
Sbjct:   784 VLFYKL 789

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 255/737 (34%), Positives = 372/737 (50%)

Query:    54 NLSSTMTDLDLGGTRIKGNF-PDD-IFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD 111
             N +  +T L L      G   P+  +F L  L+ L L+ N+  +  LP S +S+  R   
Sbjct:    61 NTTGAVTKLQLPSGCFTGTLKPNSSLFELHQLRYLNLSHNNFTSSSLP-SEFSNLTR--- 116

Query:   112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF 171
              L VL +   +FTG +P+SI NL   T +  + N  TG  P  V  L+ L+  DLS N F
Sbjct:   117 -LEVLSLASSSFTGQVPSSISNLILLTHLNLSHNELTGSFPP-VRNLTKLSFLDLSYNQF 174

Query:   172 QGGVPSWLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE--NEIRGTIPNSTFQ 228
              G +P  L  TLP L  +DL KN L G ID+    +S + VRL    N+  G I     +
Sbjct:   175 SGAIPFDLLPTLPFLSYLDLKKNHLTGSIDVPNSSSSSKLVRLSLGFNQFEGKIIEPISK 234

Query:   229 LVNLTILDLSSNNLSGAIRFDQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVL 288
             L+NL  L+L+S N+S  I    F+ LK                  ++     SL SL ++
Sbjct:   235 LINLNHLELASLNISHPIDLRVFAPLKSLLVFDIRQNRLLPASLSSDSEFPLSLISLILI 294

Query:   289 RFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK--SLIDLDLSNNFMTHI 346
             +   C+I EFP   +  + L  +D+SNN I+G++ +     WK   L   +L NN +T  
Sbjct:   295 Q---CDIIEFPNIFKTLQNLEHIDISNNLIKGKVPEWF---WKLPRLSIANLVNNSLTGF 348

Query:   347 E--LHPWMN--ITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXX 402
             E      +N  +  LD   N + G+   PP  +  L   NN  +G IP            
Sbjct:   349 EGSSEVLLNSSVQLLDFAYNSMTGAFPTPPLGSIYLSAWNNSFTGNIPLSICNRSSLIVL 408

Query:   403 XXXXXXXXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL 462
                     G IP CL N    L  ++L+ NSLEG I D F + +  ++LD+  N+L G L
Sbjct:   409 DLSYNKFTGPIPQCLSN----LKVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKL 464

Query:   463 PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI-TFPFQA 521
             P+SL  C  L  ++V  N I D+FP WL +L  L +L LRSNRF+G L   +     F  
Sbjct:   465 PKSLLNCSSLRFLSVDNNRIEDTFPFWLKALPNLHVLTLRSNRFFGHLSPPDRGPLAFPE 524

Query:   522 LRIIDLSHNEFTGFLPRRIFPSMEAMK-NVDEQGRLEYMG---GAFY--DESITVAMQGH 575
             LRI++LS N FTG LP   F + +A    ++E GR+ YMG    A+Y  ++++ +  +G 
Sbjct:   525 LRILELSDNSFTGSLPPNFFVNWKASSPKINEDGRI-YMGDYKNAYYIYEDTMDLQYKGL 583

Query:   576 DFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE 635
               +  K+L  +  +DFS N+  G+IPE +G  K L  LNLS+N+ TG+IP+S  N+T LE
Sbjct:   584 FMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVTELE 643

Query:   636 SLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 695
             SLDLS N+L G IP +             +N+L G IP+G QF+     S+ GN+ LCG 
Sbjct:   644 SLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGL 703

Query:   696 PLTVRCSNDGLPEALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQW 755
             PL   C     P   P    + +E     +WK    GY  GL++GL + +++ S  KP+W
Sbjct:   704 PLQGSCVAP--PTKYPKEEDEEEEEDEVIEWKAVFFGYWPGLLLGLVMAHVIASF-KPKW 760

Query:   756 FVRMVEGDQQKNVRRAR 772
             FV+++   + K V   R
Sbjct:   761 FVKILGPAKGKQVDPVR 777

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	776
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-35
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  235 bits (600), Expect = 1e-65
 Identities = 198/649 (30%), Positives = 289/649 (44%), Gaps = 111/649 (17%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPK--SNWSSPLRELD 111
           N SS +  +DL G  I G     IFRLP +Q + L+ N+QL+G +P      SS LR L+
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLN 124

Query: 112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF 171
           L +       NFTGSIP   G++     +  ++N  +G++P+ +   S L   DL GN  
Sbjct: 125 LSN------NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 172 QGGVPSWLFTLPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229
            G +P+ L  L SL  + L+ N L G  P +L Q+  SL+ + L  N + G IP     L
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
            +L  LDL  NNL+G I                                           
Sbjct: 236 TSLNHLDLVYNNLTGPI------------------------------------------- 252

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
                    P  L N + L  L L  N++ G I  S     + LI LDLS+N ++     
Sbjct: 253 ---------PSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS----- 297

Query: 350 PWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSD 406
                           G I   ++   + ++L + +N  +GKIP ++ SL  LQ L L  
Sbjct: 298 ----------------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 407 NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL 466
           N  SG IP  LG     L  L L  N+L G I +   ++ +L  L L SN LEG +P+SL
Sbjct: 342 NKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 467 AKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIID 526
             C  L  V +  N  S   P     L  +  L + +N   G + +     P  +L+++ 
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP--SLQMLS 458

Query: 527 LSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMF 586
           L+ N+F G LP       + ++N+D                 + A+      L +++   
Sbjct: 459 LARNKFFGGLPD--SFGSKRLENLD-----------LSRNQFSGAVPRKLGSLSELM--- 502

Query: 587 RAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 646
             +  S N+  GEIP+ L + K L  L+LSHN L+G IP SF  M  L  LDLS N+L G
Sbjct: 503 -QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561

Query: 647 RIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE 695
            IP+ L +V +L  +N+S+N L G +P    F      +  GNI LCG 
Sbjct: 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  142 bits (360), Expect = 6e-35
 Identities = 136/450 (30%), Positives = 207/450 (46%), Gaps = 55/450 (12%)

Query: 1   MSHLSKLTHLDLSFCVLT---------IEQRTFDLLASN------------LTKLSLLHL 39
           +   S L  LDL   VL          +    F  LASN            +  L  ++L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 40  GATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLP 99
           G  N+S   P+ +  L+S +  LDL    + G  P  +  L NLQ LFL  N +L+G +P
Sbjct: 220 GYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIP 277

Query: 100 KSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLS 159
            S +S     L  L  LD+   + +G IP  +  L     +   SN+FTG++P  ++ L 
Sbjct: 278 PSIFS-----LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 160 YLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQD------VRL 213
            L    L  N F G +P  L    +L  +DLS N L G     ++P  L        + L
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-----EIPEGLCSSGNLFKLIL 387

Query: 214 EENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSS 273
             N + G IP S     +L  + L  N+ SG +  + F+KL  + FLD+SNN+L      
Sbjct: 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFLDISNNNL-----Q 441

Query: 274 ANI-SIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK 331
             I S K+ +PSL++L  A        P     S+ L  LDLS N+  G + +       
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLG-SLS 499

Query: 332 SLIDLDLSNNFMTHI---ELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKL 385
            L+ L LS N ++     EL     + +LDL +N++ G I       P    L +S N+L
Sbjct: 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPP 415
           SG+IP ++ ++ SL  +++S N+L G++P 
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 92.6 bits (230), Expect = 2e-19
 Identities = 60/186 (32%), Positives = 86/186 (46%), Gaps = 44/186 (23%)

Query: 598 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 657
           G IP  +   + L+ +NLS NS+ GNIP S  ++T+LE LDLS+N  +G IPE L  +T+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 658 LALLNLSYNRLWGRIP--------RGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEA 709
           L +LNL+ N L GR+P            FN      +  N  LCG P        GL   
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIP--------GLRAC 537

Query: 710 LPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGYMVFSTGKPQWFVRMVEGDQQKNVR 769
            P  S              AK+G A     G+S+ ++        W+ R      ++N+ 
Sbjct: 538 GPHLSVG------------AKIGIA----FGVSVAFLFLVICAMCWWKR------RQNIL 575

Query: 770 RARRRH 775
           RA+R  
Sbjct: 576 RAQRIA 581

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 382 NNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDT 441
           N  L G IP  I  L  LQ ++LS N++ G IPP LG+  T L  L L  NS  G I ++
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPES 485

Query: 442 FANASHLRSLDLNSNKLEGPLPRSL 466
               + LR L+LN N L G +P +L
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 76/276 (27%), Positives = 126/276 (45%), Gaps = 20/276 (7%)

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSL---QDVRLEENEIRGTIPNSTFQLVNLTILDL 237
           +L  LLS+DL        +D  +   +L     + L  N +R  I +   +L NLT LDL
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDL 123

Query: 238 SSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297
            +NN++  I          L+ LDLS+N + S  S        +LP+LK L  ++ ++++
Sbjct: 124 DNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLR-----NLPNLKNLDLSFNDLSD 177

Query: 298 FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID-LDLSNNFMTHI--ELHPWMNI 354
            P  L N   L  LDLS N+I             S ++ LDLSNN +  +   L    N+
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS---DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Query: 355 TTLDLRNNRIQGSILVP--PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
           + L+L NN+++          + + L +SNN++S     S+ SL++L+ L LS N+LS  
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNA 292

Query: 413 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHL 448
           +P          + L+L        +       ++ 
Sbjct: 293 LPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 23/96 (23%)

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
           G +P+ +S L +L + +LSGN  +G +P  L ++ SL  +DLS N  N            
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN------------ 479

Query: 209 QDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG 244
                      G+IP S  QL +L IL+L+ N+LSG
Sbjct: 480 -----------GSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 30/82 (36%), Positives = 43/82 (52%)

Query: 427 LHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF 486
           L L N  L G I +  +   HL+S++L+ N + G +P SL     LEV+++  N  + S 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 487 PCWLGSLHELKILVLRSNRFYG 508
           P  LG L  L+IL L  N   G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 7/68 (10%)

Query: 356 TLDLRNNRIQGSILVPP-----PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
           +++L  N I+G+I  PP      S +VL +S N  +G IP S+  L+SL+ L+L+ N+LS
Sbjct: 446 SINLSGNSIRGNI--PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 411 GTIPPCLG 418
           G +P  LG
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 402 LSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGP 461
           L L +  L G IP  +      L +++L  NS+ G+I  +  + + L  LDL+ N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 462 LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSL 493
           +P SL +   L ++N+  N +S   P  LG  
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L L    ++G  P+DI +L +LQ + L+ NS + G +P S     L  +  L VLD+ + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPS-----LGSITSLEVLDLSYN 476

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSG-LSYLTTFDLSGNYFQGGVP 176
           +F GSIP S+G LT    +    N  +G++P  + G L +  +F+ + N    G+P
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI 672
           L L +  L G IP     +  L+S++LS N + G IP  L S+T+L +L+LSYN   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 673 P 673
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)

Query: 203 QLPNS------LQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
            +PN       LQ + L  N IRG IP S   + +L +LDLS N+ +G+I  +   +L  
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTS 491

Query: 257 LQFLDLSNNSL 267
           L+ L+L+ NSL
Sbjct: 492 LRILNLNGNSL 502

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 68/245 (27%), Positives = 99/245 (40%), Gaps = 12/245 (4%)

Query: 24  FDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL 83
            D   + L  L L  L      L    S L   + +T LDL    I    P       NL
Sbjct: 83  LDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNL 142

Query: 84  QILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFA 143
           + L L+ N          +  SPLR L  L  LD+ F + +  +P  + NL+    +  +
Sbjct: 143 KELDLSDNK-------IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194

Query: 144 SNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQ 203
            N  +  LP  +  LS L   DLS N     + S L  L +L  ++LS N L    +   
Sbjct: 195 GNKIS-DLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS 263
             ++L+ + L  N+I  +  +S   L NL  LDLS N+LS A+       L     L+L 
Sbjct: 253 NLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Query: 264 NNSLL 268
                
Sbjct: 311 LTLKA 315

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           +LK L+LS+N LT     +F+ +  L+ LDLS N L    PE    + +L  L+LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 56/192 (29%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 366 GSILVPPPSTKVLLVSNNKLSGKIPPSICSL-------SSLQYLSLSDNNLSGTIPPCLG 418
            S L P PS K L +S N+  G+IP  + SL         LQ L LSDN L       L 
Sbjct: 44  ASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102

Query: 419 NF--STELITLHLKNNSLEGHIHDTFA-----NASHLRSLDLNSNKLEGPLPRSLAKCI- 470
           +   S+ L  L L NN L        A         L  L L  N+LEG    +LAK + 
Sbjct: 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162

Query: 471 ---KLEVVNVGKNMISDS-FPCW---LGSLHELKILVLRSNRFY----GPLCNSNITFP- 518
               L+ +N+  N I D+        L +   L++L L +N         L     T   
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA---ETLAS 219

Query: 519 FQALRIIDLSHN 530
            ++L +++L  N
Sbjct: 220 LKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 23/55 (41%), Positives = 29/55 (52%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
           D S NR             +LKVL+LS N+LT   P +F  + +L SLDLS N L
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 589 MDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 627
           +D S N F+G IPE LG   SL++LNL+ NSL+G +P +
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 88  LNLNSQ-LTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH 146
           L L++Q L G++P ++ S    +L  L  +++   +  G+IP S+G++T    +  + N 
Sbjct: 423 LGLDNQGLRGFIP-NDIS----KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 147 FTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLP 183
           F G +P  +  L+ L   +L+GN   G VP+ L    
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS 266
           +L+ + L  N +      +   L NL +LDLS NNL+  I  + FS L  L+ LDLS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNN 59

Query: 267 L 267
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 71/308 (23%), Positives = 108/308 (35%), Gaps = 55/308 (17%)

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN-----EIRGTIPNSTFQLVNLTILDLSSN 240
           LS+           +L      LQ +RLE N       +        Q  +L  L LS N
Sbjct: 3   LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLN 61

Query: 241 NLSGAIRF-----DQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNI 295
                 R         +K   LQ LDLS+N+ L       +       SL+ L+     +
Sbjct: 62  ETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 296 TEFP------GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
            +        G       L  L L  NR++G   +             L+     + +L 
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------------ALAKALRANRDLK 168

Query: 350 PWMNITTLDLRNNRIQGS-------ILVPPPSTKVLLVSNNKL----SGKIPPSICSLSS 398
                  L+L NN I  +        L    + +VL ++NN L    +  +  ++ SL S
Sbjct: 169 ------ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222

Query: 399 LQYLSLSDNNLSG----TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA----SHLRS 450
           L+ L+L DNNL+      +   L + +  L+TL L  N +        A        L  
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282

Query: 451 LDLNSNKL 458
           LDL  NK 
Sbjct: 283 LDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           NL  LDLS+N L+  I    F  L  L+ LDLS N+L S +  A       LPSL+ L  
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEA----FSGLPSLRSLDL 55

Query: 291 AYCNI 295
           +  N+
Sbjct: 56  SGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 353 NITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
           N+ +LDL NNR+           P+ KVL +S N L+   P +   L SL+ L LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMI 482
           L +L L NN L       F    +L+ LDL+ N L    P + +    L  +++  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%)

Query: 125 GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPS 184
           G IP  I  L     I  + N   G +P  +  ++ L   DLS N F G +P  L  L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 185 LLSIDLSKNMLNG 197
           L  ++L+ N L+G
Sbjct: 492 LRILNLNGNSLSG 504

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN 275
           NL  LDLS+N ++        S L  L+ LDLS N +   +  +N
Sbjct: 2   NLETLDLSNNQIT---DLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 28/112 (25%)

Query: 211 VRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF 270
           + L+   +RG IPN   +L +L  ++LS N++ G I       +  L+ LDLS NS    
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSF--- 478

Query: 271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRI 322
               N SI  SL  L  LR                    +L+L+ N + GR+
Sbjct: 479 ----NGSIPESLGQLTSLR--------------------ILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
           S L  L  ++L   ++    P SL +++S +  LDL      G+ P+ + +L +L+IL L
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFA 143
           N NS L+G +P +     L         + G C   G +     +L+   +I  A
Sbjct: 498 NGNS-LSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACGPHLSVGAKIGIA 550

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
           +L+SLDL++N+L      +      L+V+++  N ++   P     L  L+ L L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 36/213 (16%)

Query: 263 SNNSLLSFTSSANISIKYSLPS-LKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGR 321
           + N++L+   S   ++   LP+ +  L     N+T  P       EL  L++S N++   
Sbjct: 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL 257

Query: 322 ISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVS 381
                 PG   L++L + +N +TH+   P   +  L +  N++  S+ V PP  + L VS
Sbjct: 258 --PVLPPG---LLELSIFSNPLTHLPALP-SGLCKLWIFGNQLT-SLPVLPPGLQELSVS 310

Query: 382 NNKLSG--KIPPSICSL--------------SSLQYLSLSDNNLSGTIPPCLGNFSTELI 425
           +N+L+    +P  +C L              S LQ LS+SDN L+      L    +EL 
Sbjct: 311 DNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-----LPTLPSELY 365

Query: 426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
            L   NN L        A  S L+ L ++ N+L
Sbjct: 366 KLWAYNNRLT----SLPALPSGLKELIVSGNRL 394

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	776
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
PLN03150	623	hypothetical protein; Provisional	99.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG4341	483	consensus F-box protein containing LRR [General fu	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
KOG4341	483	consensus F-box protein containing LRR [General fu	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.33
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.23
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.72
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.49
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.45
KOG4308	478	consensus LRR-containing protein [Function unknown	93.26
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.1
KOG4308	478	consensus LRR-containing protein [Function unknown	91.21
smart00370	26	LRR Leucine-rich repeats, outliers.	90.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.54
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.85
smart00370	26	LRR Leucine-rich repeats, outliers.	88.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.6
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.58
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.57
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.96

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.3e-63  Score=601.42  Aligned_cols=542  Identities=35%  Similarity=0.533  Sum_probs=427.5

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR  136 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~  136 (776)
                      .+++.|+|++|.+.+.++.++..+++|++|+|++| .+.+.+|..+    +..+++|++|++++|++++.+|.  +.+++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~----~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~  141 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDI----FTTSSSLRYLNLSNNNFTGSIPR--GSIPN  141 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHH----hccCCCCCEEECcCCccccccCc--cccCC
Confidence            56777777777777777777777777777777777 7777677653    22444577777777777776664  45677


Q ss_pred             CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCC-CCCCCCCcEEEccC
Q 047486          137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDL-FQLPNSLQDVRLEE  215 (776)
Q Consensus       137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~  215 (776)
                      |++|++++|.+++..|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+..+. +..+++|++|++++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            77777777777777777777777788888877777777777777777788888877777764443 34447788888888


Q ss_pred             CcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCC
Q 047486          216 NEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNI  295 (776)
Q Consensus       216 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l  295 (776)
                      |.+.+.+|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+..   .                      
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~---~----------------------  275 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG---P----------------------  275 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeec---c----------------------
Confidence            88877788888888888888888888876665 567888888888888887432   1                      


Q ss_pred             CCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCC
Q 047486          296 TEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPST  375 (776)
Q Consensus       296 ~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  375 (776)
                        +|..+..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+++..+..+                  ..+++|
T Consensus       276 --~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~------------------~~l~~L  334 (968)
T PLN00113        276 --IPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVAL------------------TSLPRL  334 (968)
T ss_pred             --CchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhH------------------hcCCCC
Confidence              23334444455555555555444444332 334444444444443332222111                  123455


Q ss_pred             cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCC
Q 047486          376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS  455 (776)
Q Consensus       376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  455 (776)
                      +.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.... +|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence            6677777777778888888889999999999999888888887765 799999999999999999999999999999999


Q ss_pred             CcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCC
Q 047486          456 NKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGF  535 (776)
Q Consensus       456 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~  535 (776)
                      |++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|...   ..++|+.||+++|++++.
T Consensus       414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~  490 (968)
T PLN00113        414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGA  490 (968)
T ss_pred             CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCc
Confidence            99999999999999999999999999999999888899999999999999988777653   457899999999999988


Q ss_pred             CCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeC
Q 047486          536 LPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNL  615 (776)
Q Consensus       536 ~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  615 (776)
                      +|..+ .                                       .++.|+.|++++|++.+.+|..++++++|++|+|
T Consensus       491 ~~~~~-~---------------------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        491 VPRKL-G---------------------------------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             cChhh-h---------------------------------------hhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence            77542 1                                       1567899999999999999999999999999999


Q ss_pred             CCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCC
Q 047486          616 SHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGE  695 (776)
Q Consensus       616 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~  695 (776)
                      ++|.+++.+|..|.++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...++.||+.+||.
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 047486          696 P  696 (776)
Q Consensus       696 p  696 (776)
                      +
T Consensus       611 ~  611 (968)
T PLN00113        611 D  611 (968)
T ss_pred             c
Confidence            5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-58  Score=552.56  Aligned_cols=539  Identities=29%  Similarity=0.430  Sum_probs=425.6

Q ss_pred             CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCC-CCCCCCEEeccCCCCccccCCCCCCCCCccc
Q 047486           31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRE  109 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~  109 (776)
                      ..+++.|+|+++.+.+..+..+..+ ++|++|+|++|.+.+.+|..+. .+++|++|++++| .+.+.+|.       ..
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~-------~~  138 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR-------GS  138 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc-------cc
Confidence            3578889999999888888888888 8999999999999888887765 8899999999999 88877774       33


Q ss_pred             CCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486          110 LDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID  189 (776)
Q Consensus       110 L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  189 (776)
                      +.+|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..|+++++|++|++++|.+.+.+|..++++++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            55599999999999888898899999999999999998888899999999999999999999888898899999999999


Q ss_pred             ccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          190 LSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       190 l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      +++|.+.+..+. +..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|.+.
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-hhHhhccCcCEEECcCCeec
Confidence            999988875543 4555899999999999988899999999999999999999887666 67788899999999988743


Q ss_pred             ccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccc
Q 047486          269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL  348 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  348 (776)
                      .   .                        +|.++.++++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+++..+
T Consensus       298 ~---~------------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        298 G---E------------------------IPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             c---C------------------------CChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCC
Confidence            2   1                        23344444455555555555444443332 334444444444333332211


Q ss_pred             ccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEE
Q 047486          349 HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLH  428 (776)
Q Consensus       349 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~  428 (776)
                      ..+                  ..+++|+.|++++|++.+.+|..++.+++|+.|++++|.+.+.+|..+..+. +|+.|+
T Consensus       350 ~~l------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~L~~L~  410 (968)
T PLN00113        350 KNL------------------GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR-SLRRVR  410 (968)
T ss_pred             hHH------------------hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC-CCCEEE
Confidence            111                  1134456666666777777777788888888888888888888888777765 688888


Q ss_pred             CCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccc
Q 047486          429 LKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG  508 (776)
Q Consensus       429 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  508 (776)
                      +++|.+++..|..|..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+
T Consensus       411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~  489 (968)
T PLN00113        411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSG  489 (968)
T ss_pred             CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCC
Confidence            88888888888888888888888888888888888888888888888888888888777765 45788888888888888


Q ss_pred             cCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeE
Q 047486          509 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRA  588 (776)
Q Consensus       509 ~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  588 (776)
                      ..|...  ..+++|+.|++++|.+.+.+|..+ ..                                       ++.|+.
T Consensus       490 ~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~-~~---------------------------------------l~~L~~  527 (968)
T PLN00113        490 AVPRKL--GSLSELMQLKLSENKLSGEIPDEL-SS---------------------------------------CKKLVS  527 (968)
T ss_pred             ccChhh--hhhhccCEEECcCCcceeeCChHH-cC---------------------------------------ccCCCE
Confidence            777654  567888999999999988887653 11                                       567899


Q ss_pred             EecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCc-
Q 047486          589 MDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR-  667 (776)
Q Consensus       589 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-  667 (776)
                      |+|++|.+++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++|+++|.+|.. +....+....+.+|+ 
T Consensus       528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~  606 (968)
T PLN00113        528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNID  606 (968)
T ss_pred             EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999964 333445555667776 


Q ss_pred             cee
Q 047486          668 LWG  670 (776)
Q Consensus       668 l~g  670 (776)
                      ++|
T Consensus       607 lc~  609 (968)
T PLN00113        607 LCG  609 (968)
T ss_pred             ccC
Confidence            554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.2e-42  Score=334.11  Aligned_cols=417  Identities=24%  Similarity=0.316  Sum_probs=291.7

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR  136 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~  136 (776)
                      ..++.+.+++|.+. .+.+++.++..|.+|++++| .+.. .|.+     ++++..++.+++++|+++ .+|..++.+.+
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~-lp~a-----ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~  115 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQ-LPAA-----IGELEALKSLNVSHNKLS-ELPEQIGSLIS  115 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhh-CCHH-----HHHHHHHHHhhcccchHh-hccHHHhhhhh
Confidence            46888899999887 66677888999999999998 6663 5555     455555888999999998 78889999999


Q ss_pred             CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCC
Q 047486          137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN  216 (776)
Q Consensus       137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n  216 (776)
                      |+.++.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.++++.+|..+++.+|.+....+..-....|++|+...|
T Consensus       116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N  193 (565)
T KOG0472|consen  116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN  193 (565)
T ss_pred             hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence            999999999988 67788899999999999999988 7788889999999999999988876555422488999999998


Q ss_pred             cCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC
Q 047486          217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT  296 (776)
Q Consensus       217 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  296 (776)
                      .++ .+|+.++.+.+|+.|++..|++. .+|  .|.+|..|+++.++.|+|..++...    ...++++..||+++|+++
T Consensus       194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~----~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEH----LKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHH----hcccccceeeeccccccc
Confidence            886 78999999999999999999998 666  7899999999999999987777643    457899999999999999


Q ss_pred             CcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc-----cccCEEeccCcccCCCCCCC
Q 047486          297 EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW-----MNITTLDLRNNRIQGSILVP  371 (776)
Q Consensus       297 ~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~  371 (776)
                      ++|+.+.-+.+|+.||+++|.++ .+|... +++ .|+.|.+.+|.+..+...-.     .-|++|.=   .+...-+..
T Consensus       266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sL-gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~  339 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNNDIS-SLPYSL-GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQ  339 (565)
T ss_pred             cCchHHHHhhhhhhhcccCCccc-cCCccc-ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCC
Confidence            99998888999999999999998 577766 777 89999999998766532111     00111100   010000000


Q ss_pred             CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCC--CccEEECCCCcCCccCcccccCCCCcc
Q 047486          372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFST--ELITLHLKNNSLEGHIHDTFANASHLR  449 (776)
Q Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~  449 (776)
                      .   +.=.-+.-..............+.++|++++-+++ .+|+.++....  -.+..+++.|++. .+|..+..+..+.
T Consensus       340 s---e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv  414 (565)
T KOG0472|consen  340 S---EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV  414 (565)
T ss_pred             C---cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence            0   00000000000011112233456777888888887 77776665431  2566777777776 3444444444433


Q ss_pred             -EEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486          450 -SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR  505 (776)
Q Consensus       450 -~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  505 (776)
                       .+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+..|+.|+++.|+
T Consensus       415 T~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  415 TDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR  469 (565)
T ss_pred             HHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc
Confidence             3344444443 55666666666666666666554 344444444444444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-38  Score=319.91  Aligned_cols=364  Identities=27%  Similarity=0.316  Sum_probs=297.9

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK  192 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  192 (776)
                      -+.||+++|.+...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            567999999999888889999999999999999998 6787666777899999999999988888899999999999999


Q ss_pred             CcCCCc-CCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486          193 NMLNGP-IDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT  271 (776)
Q Consensus       193 n~l~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~  271 (776)
                      |.++.. .+.|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|..|+|....
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence            999873 344544478999999999999888888999999999999999998 888899999999999999999987665


Q ss_pred             cccccccccCCCCccEEeccCCCCCCcch-hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccccc
Q 047486          272 SSANISIKYSLPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP  350 (776)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  350 (776)
                      +..    |.++++|+.|.+..|++..+.+ .|..+.++++|+|+.|+++..-..+. .++++|+.|++++|.|..+....
T Consensus       238 ~lt----FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  238 GLT----FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             hhh----hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc-cccchhhhhccchhhhheeecch
Confidence            543    6678899999999998887764 67788889999999998884444444 67888888888888888776654


Q ss_pred             ccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC
Q 047486          351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK  430 (776)
Q Consensus       351 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~  430 (776)
                      +.                  .+++|++|+|++|.++...+.+|..+..|++|+|++|.+. .+.+..+.+.++|++|||+
T Consensus       313 Ws------------------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr  373 (873)
T KOG4194|consen  313 WS------------------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLR  373 (873)
T ss_pred             hh------------------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCc
Confidence            42                  2345567777777777777778888888888888888887 6666655655678888888


Q ss_pred             CCcCCccCc---ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccC
Q 047486          431 NNSLEGHIH---DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS  503 (776)
Q Consensus       431 ~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  503 (776)
                      +|.++..+.   ..|.++++|+.|+|.+|++..+.-.+|.++.+|+.|||.+|.|..+-|.+|..+ .|++|.+..
T Consensus       374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  374 SNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             CCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            888775543   467788888888888888887777788888888888888888888888888887 788777754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-38  Score=318.19  Aligned_cols=370  Identities=25%  Similarity=0.300  Sum_probs=242.2

Q ss_pred             CEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCc
Q 047486          162 TTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN  241 (776)
Q Consensus       162 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~  241 (776)
                      +.||+++|.+....+..|.++++|+++++.+|.++..+.......+|+.|+|.+|.|+..-.+.+..++.|+.||||.|.
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~  160 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL  160 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence            34566666665555555566666666666666555433333333557777777777776667778888889999999998


Q ss_pred             CccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch-hhhCCcccceEecccCcccc
Q 047486          242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQG  320 (776)
Q Consensus       242 l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~  320 (776)
                      ++ .++...|..-.++++|+|++|.|+.+....    |..+.+|..|.++.|+++.+|. .|.++++|+.|+|..|+|. 
T Consensus       161 is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-  234 (873)
T KOG4194|consen  161 IS-EIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-  234 (873)
T ss_pred             hh-cccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-
Confidence            87 788788888888999999999887776543    5566678888888888888874 6677888888888888775 


Q ss_pred             ccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCC
Q 047486          321 RISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQ  400 (776)
Q Consensus       321 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  400 (776)
                      .+....|.++++|+                                          .|.+..|.+...-...|..+.+++
T Consensus       235 ive~ltFqgL~Sl~------------------------------------------nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQ------------------------------------------NLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             eehhhhhcCchhhh------------------------------------------hhhhhhcCcccccCcceeeecccc
Confidence            22223334444444                                          444444444444455566666677


Q ss_pred             EEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC
Q 047486          401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN  480 (776)
Q Consensus       401 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  480 (776)
                      +|+|+.|++...-..+++++. .|+.|++++|.|..+-++.+..+++|++|+|+.|+|+...+.+|..+..|++|+|++|
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             eeecccchhhhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence            777777766633334445544 5666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceeccc
Q 047486          481 MISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMG  560 (776)
Q Consensus       481 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~  560 (776)
                      .+......+|..+++|++|+|++|.++..+-+..                        ..|.                  
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa------------------------~~f~------------------  389 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA------------------------VAFN------------------  389 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch------------------------hhhc------------------
Confidence            6665555556555555555555555544322211                        0011                  


Q ss_pred             CccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEecc
Q 047486          561 GAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS  640 (776)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  640 (776)
                                           .+++|+.|++.+|++..+...+|.++.+|+.|||.+|.|..+.|.+|..| .|++|.++
T Consensus       390 ---------------------gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  390 ---------------------GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ---------------------cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence                                 14556677777777776666778888888888888888888888888887 78777765


Q ss_pred             CccC
Q 047486          641 FNKL  644 (776)
Q Consensus       641 ~N~l  644 (776)
                      .-.+
T Consensus       448 Sssf  451 (873)
T KOG4194|consen  448 SSSF  451 (873)
T ss_pred             ccce
Confidence            5433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.2e-40  Score=322.18  Aligned_cols=491  Identities=25%  Similarity=0.320  Sum_probs=336.2

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD  111 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~  111 (776)
                      ..|+.+.+++|.+....+ .+.++ ..|++|++.+|.+. ..|.+++.+..++.++.++| .+. .+|..     +..+.
T Consensus        45 v~l~~lils~N~l~~l~~-dl~nL-~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls-~lp~~-----i~s~~  114 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRE-DLKNL-ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLS-ELPEQ-----IGSLI  114 (565)
T ss_pred             cchhhhhhccCchhhccH-hhhcc-cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHh-hccHH-----Hhhhh
Confidence            346667777777776643 56667 67778888877776 67777777777778888777 555 35555     33333


Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      .|+.+++++|.+. .+|++++.+..|..++..+|+++ ..|.++..+.+|..+++.+|++....|. .-+++.|++||..
T Consensus       115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~  191 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCN  191 (565)
T ss_pred             hhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccc
Confidence            4777788888777 56777788888888888888877 5677778888888888888888744444 4447888888888


Q ss_pred             CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486          192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT  271 (776)
Q Consensus       192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~  271 (776)
                      .|.+...++....+.+|+-|++..|++. ..| .|..|..|+++.++.|.+. .+|.....+++++..||+..|+++++|
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~P  268 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVP  268 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCc
Confidence            8877776666666677888888888886 556 7888888888888888887 778777788888888888888888888


Q ss_pred             cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccC-C-ccCCeEeCcCccccccccc
Q 047486          272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPG-W-KSLIDLDLSNNFMTHIELH  349 (776)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~-l-~~L~~L~l~~n~l~~~~~~  349 (776)
                      +++     .-+.+|..||+++|.++.+|..++++ .|+.|.+.+|.+. .+-..+..+ . .-|++|.=   .++.....
T Consensus       269 de~-----clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs---~~~~dglS  338 (565)
T KOG0472|consen  269 DEI-----CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS---KIKDDGLS  338 (565)
T ss_pred             hHH-----HHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH---hhccCCCC
Confidence            664     35678888899999998888888888 8899999998875 222221111 0 11222211   11100000


Q ss_pred             cccccCEEeccCcccCCCCCC--CCCCCcEEEccCCcCccCCCccccCCC--CCCEEEccCCcCcccCCchhhhcCCCcc
Q 047486          350 PWMNITTLDLRNNRIQGSILV--PPPSTKVLLVSNNKLSGKIPPSICSLS--SLQYLSLSDNNLSGTIPPCLGNFSTELI  425 (776)
Q Consensus       350 ~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~~L~  425 (776)
                      .-..-+.-.  .....+..+.  ...+.+.|+++.-+++....+.|....  -.+..+++.|++. ++|..+.....-.+
T Consensus       339 ~se~~~e~~--~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT  415 (565)
T KOG0472|consen  339 QSEGGTETA--MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT  415 (565)
T ss_pred             CCccccccc--CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH
Confidence            000000000  0000001111  134567777777777744444444322  3778999999998 89988877764455


Q ss_pred             EEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486          426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR  505 (776)
Q Consensus       426 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  505 (776)
                      .+++++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+..|+.|+++.|.+. ..|..+..+..++.+..    
T Consensus       416 ~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtlla----  488 (565)
T KOG0472|consen  416 DLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLA----  488 (565)
T ss_pred             HHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHh----
Confidence            6667776664 77888899999999999999887 67888899999999999999886 45554433333222222    


Q ss_pred             ccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcc
Q 047486          506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVM  585 (776)
Q Consensus       506 l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (776)
                                                                                                      
T Consensus       489 --------------------------------------------------------------------------------  488 (565)
T KOG0472|consen  489 --------------------------------------------------------------------------------  488 (565)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCc
Q 047486          586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD  645 (776)
Q Consensus       586 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  645 (776)
                            ++|++....|..+.++.+|.+|||.+|.+. .+|..+++|++|++|++++|.+.
T Consensus       489 ------s~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  489 ------SNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ------ccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                  234444444555777888888888888887 67778888888888888888887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=324.92  Aligned_cols=483  Identities=26%  Similarity=0.341  Sum_probs=305.3

Q ss_pred             EeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEE
Q 047486           37 LHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVL  116 (776)
Q Consensus        37 L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L  116 (776)
                      +|++.+++.-+ |..+..- ..++.|+++.|.+-...-+.+.+.-+|+.||+++| .+. ..|..     +..+.+|+.|
T Consensus         3 vd~s~~~l~~i-p~~i~~~-~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~-~fp~~-----it~l~~L~~l   73 (1081)
T KOG0618|consen    3 VDASDEQLELI-PEQILNN-EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QIS-SFPIQ-----ITLLSHLRQL   73 (1081)
T ss_pred             cccccccCccc-chhhccH-HHHHhhhccccccccCchHHhhheeeeEEeecccc-ccc-cCCch-----hhhHHHHhhc
Confidence            34555554433 4444333 34666666666544221233334445777777776 433 33433     4445557777


Q ss_pred             EccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCC
Q 047486          117 DIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLN  196 (776)
Q Consensus       117 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  196 (776)
                      +++.|.+. ..|.+.+++.+|++++|.+|.+. ..|..+..+++|++||++.|.+. .+|..+..+..+..+..++|...
T Consensus        74 n~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~  150 (1081)
T KOG0618|consen   74 NLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI  150 (1081)
T ss_pred             ccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence            77777776 56777888888888888888777 67888888888888888888886 77777888888888888888222


Q ss_pred             CcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccccccc
Q 047486          197 GPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANI  276 (776)
Q Consensus       197 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  276 (776)
                      ...+   . ..++.+++..|.+.+.++..+..++.  .|+|.+|.+. .   ..+..+.+|+.|....|++..+...   
T Consensus       151 ~~lg---~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~ls~l~~~---  217 (1081)
T KOG0618|consen  151 QRLG---Q-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQLSELEIS---  217 (1081)
T ss_pred             hhhc---c-ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhcccceEEec---
Confidence            1111   1 33777777777777777777776666  6888888775 3   3456667777777776664433221   


Q ss_pred             ccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCE
Q 047486          277 SIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITT  356 (776)
Q Consensus       277 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~  356 (776)
                           -+                       +|+.|+.++|.+....+.   .                            
T Consensus       218 -----g~-----------------------~l~~L~a~~n~l~~~~~~---p----------------------------  238 (1081)
T KOG0618|consen  218 -----GP-----------------------SLTALYADHNPLTTLDVH---P----------------------------  238 (1081)
T ss_pred             -----Cc-----------------------chheeeeccCcceeeccc---c----------------------------
Confidence                 13                       334444444433310000   0                            


Q ss_pred             EeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCc
Q 047486          357 LDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG  436 (776)
Q Consensus       357 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~  436 (776)
                                    .+.+|+++++++|+++ .+|.+++.+.+|+.++..+|+++ .+|..++... +|+.|.+.+|.+..
T Consensus       239 --------------~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~-~L~~l~~~~nel~y  301 (1081)
T KOG0618|consen  239 --------------VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRIT-SLVSLSAAYNELEY  301 (1081)
T ss_pred             --------------ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhh-hHHHHHhhhhhhhh
Confidence                          0122344444444444 34567777777777777777775 6777666665 67777777777764


Q ss_pred             cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCC-CcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCC
Q 047486          437 HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK-LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI  515 (776)
Q Consensus       437 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  515 (776)
                       +|......++|+.|+|..|++....+..+..... |..|+.+.|++.......=...+.|+.|++.+|.++...-..+ 
T Consensus       302 -ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l-  379 (1081)
T KOG0618|consen  302 -IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL-  379 (1081)
T ss_pred             -CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh-
Confidence             3445556777778888877777544444444443 6677777777664432222345677778888888776544433 


Q ss_pred             CcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc
Q 047486          516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR  595 (776)
Q Consensus       516 ~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  595 (776)
                       ..+..|++|+|++|++. .+|...+.+++                                       .|+.|+||+|+
T Consensus       380 -~~~~hLKVLhLsyNrL~-~fpas~~~kle---------------------------------------~LeeL~LSGNk  418 (1081)
T KOG0618|consen  380 -VNFKHLKVLHLSYNRLN-SFPASKLRKLE---------------------------------------ELEELNLSGNK  418 (1081)
T ss_pred             -ccccceeeeeecccccc-cCCHHHHhchH---------------------------------------HhHHHhcccch
Confidence             55677888888888876 56766555443                                       34566777777


Q ss_pred             ccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcC-CCchhhccccccccccCccCc
Q 047486          596 FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG-RIPEQLLSVTALALLNLSYNR  667 (776)
Q Consensus       596 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~ls~N~  667 (776)
                      ++ .+|.++..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++. .+|..... ++|++||++||.
T Consensus       419 L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  419 LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            77 56777777777888877777776 556 67777778888888887764 33443333 677788877775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=316.36  Aligned_cols=506  Identities=25%  Similarity=0.294  Sum_probs=326.3

Q ss_pred             EEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEec
Q 047486            9 HLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL   88 (776)
Q Consensus         9 ~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L   88 (776)
                      .+|.+.+++    ..+|..+-.-..+..|+++.|.+....-+.+.+. -+|+.|++++|.+. ..|..+..+++|+.|++
T Consensus         2 ~vd~s~~~l----~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~-v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~   75 (1081)
T KOG0618|consen    2 HVDASDEQL----ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKR-VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNL   75 (1081)
T ss_pred             CcccccccC----cccchhhccHHHHHhhhccccccccCchHHhhhe-eeeEEeeccccccc-cCCchhhhHHHHhhccc
Confidence            467777776    4556555554558888888887766433344443 45999999998876 78888889999999999


Q ss_pred             cCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccC
Q 047486           89 NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSG  168 (776)
Q Consensus        89 s~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  168 (776)
                      +.| .+. ..|..     +.++++|+++.|.+|.+. ..|.++..+++|++|+++.|.+. .+|..+..+..++.++.++
T Consensus        76 s~n-~i~-~vp~s-----~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~  146 (1081)
T KOG0618|consen   76 SRN-YIR-SVPSS-----CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASN  146 (1081)
T ss_pred             chh-hHh-hCchh-----hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhc
Confidence            998 554 45544     556666999999988887 78999999999999999999987 7888899999999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCc-EEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccC
Q 047486          169 NYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQ-DVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR  247 (776)
Q Consensus       169 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~  247 (776)
                      |......+    ... ++.+++..|.+.+.+....  ..++ .|+|.+|.+.   ...+..+.+|+.|....|++. .+.
T Consensus       147 N~~~~~lg----~~~-ik~~~l~~n~l~~~~~~~i--~~l~~~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~  215 (1081)
T KOG0618|consen  147 NEKIQRLG----QTS-IKKLDLRLNVLGGSFLIDI--YNLTHQLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE  215 (1081)
T ss_pred             chhhhhhc----ccc-chhhhhhhhhcccchhcch--hhhheeeecccchhh---hhhhhhccchhhhhhhhcccc-eEE
Confidence            83222222    222 7788888887766333221  2233 5999999886   345677889999999999887 322


Q ss_pred             ccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcc
Q 047486          248 FDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDS  327 (776)
Q Consensus       248 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~  327 (776)
                          -.-++|+.|+.++|.++....      .....+|++++++.++++.+|+|+..+.+|+.++..+|.++ .+|... 
T Consensus       216 ----~~g~~l~~L~a~~n~l~~~~~------~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri-  283 (1081)
T KOG0618|consen  216 ----ISGPSLTALYADHNPLTTLDV------HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRI-  283 (1081)
T ss_pred             ----ecCcchheeeeccCcceeecc------ccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHH-
Confidence                345789999999999763322      22567899999999999999999999999999999999996 666655 


Q ss_pred             cCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCC
Q 047486          328 PGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN  407 (776)
Q Consensus       328 ~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n  407 (776)
                      ....+|+.|.+..|.+..                                           +|......++|++|+|..|
T Consensus       284 ~~~~~L~~l~~~~nel~y-------------------------------------------ip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  284 SRITSLVSLSAAYNELEY-------------------------------------------IPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             hhhhhHHHHHhhhhhhhh-------------------------------------------CCCcccccceeeeeeehhc
Confidence            334555555555554443                                           3444444556666666666


Q ss_pred             cCcccCCchhhhcCC-CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCccc
Q 047486          408 NLSGTIPPCLGNFST-ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF  486 (776)
Q Consensus       408 ~l~~~~p~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  486 (776)
                      ++. .+|+.+..... +|..++.+.|.+.......=...+.|+.|++.+|.++...-..+.+...|++|+|++|++....
T Consensus       321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp  399 (1081)
T KOG0618|consen  321 NLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP  399 (1081)
T ss_pred             ccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence            655 55554433322 2445555555544322111122344555555555555444444455555555555555554333


Q ss_pred             chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486          487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE  566 (776)
Q Consensus       487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~  566 (776)
                      ...+.++..                          |+.|+||+|+++ .+|..+ ..                       
T Consensus       400 as~~~kle~--------------------------LeeL~LSGNkL~-~Lp~tv-a~-----------------------  428 (1081)
T KOG0618|consen  400 ASKLRKLEE--------------------------LEELNLSGNKLT-TLPDTV-AN-----------------------  428 (1081)
T ss_pred             HHHHhchHH--------------------------hHHHhcccchhh-hhhHHH-Hh-----------------------
Confidence            333333333                          333333444433 333221 22                       


Q ss_pred             eEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCccc-CCccccccCCCcEEeccCccCc
Q 047486          567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLD  645 (776)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~  645 (776)
                                      +..|++|..-+|++. ..| ++..+++|+.+|+|.|+++.. +|..... ++|++|||++|.-.
T Consensus       429 ----------------~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  429 ----------------LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL  489 (1081)
T ss_pred             ----------------hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence                            233344444455555 455 677888888888888888753 3433332 78888888888754


Q ss_pred             CCCchhhccccccccccCccC
Q 047486          646 GRIPEQLLSVTALALLNLSYN  666 (776)
Q Consensus       646 ~~~p~~l~~l~~L~~L~ls~N  666 (776)
                      ..--..|..+.++...++.-|
T Consensus       490 ~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  490 VFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccchhhhHHhhhhhheecccC
Confidence            344445556666666665555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.6e-33  Score=284.20  Aligned_cols=393  Identities=28%  Similarity=0.416  Sum_probs=248.4

Q ss_pred             CcEEEccCCccc-ccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          113 LSVLDIGFCNFT-GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       113 L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      .+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+.
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence            666778888777 466777777777777777777776 57777777777777777777776 344456667777777777


Q ss_pred             CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486          192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT  271 (776)
Q Consensus       192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~  271 (776)
                      .|++..                      .-+|..++.+..|+.||||+|++. .+| ..+..-+++-.|+||+|+|.++|
T Consensus        87 ~N~LKn----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~IetIP  142 (1255)
T KOG0444|consen   87 DNNLKN----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIETIP  142 (1255)
T ss_pred             cccccc----------------------CCCCchhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccccCC
Confidence            666542                      135666666677777777777766 444 44555566666666666665555


Q ss_pred             cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc
Q 047486          272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW  351 (776)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  351 (776)
                      ...    +.++..|-.|++++|.+..+|+.+..+..|+.|+|++|.+.- ........+++|                  
T Consensus       143 n~l----finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL------------------  199 (1255)
T KOG0444|consen  143 NSL----FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSL------------------  199 (1255)
T ss_pred             chH----HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhh------------------
Confidence            433    334555556666666666677777777777777777776541 111001222223                  


Q ss_pred             cccCEEeccCcccCCCCCCCCCCCcEEEccCCcCc-cCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC
Q 047486          352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLS-GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK  430 (776)
Q Consensus       352 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~  430 (776)
                                              +.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. .+|+++.... +|+.|+|+
T Consensus       200 ------------------------~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS  253 (1255)
T KOG0444|consen  200 ------------------------SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLS  253 (1255)
T ss_pred             ------------------------hhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccC
Confidence                                    23333332211 257778888888899999999887 8888888876 68888888


Q ss_pred             CCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccC-cccchhhcCCCCcCEEEccCCccccc
Q 047486          431 NNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS-DSFPCWLGSLHELKILVLRSNRFYGP  509 (776)
Q Consensus       431 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~  509 (776)
                      +|+|+.. ......-.+|++|+|+.|+++ .+|.++.+++.|+.|.+.+|+++ .-+|..++.+..|+++.         
T Consensus       254 ~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~---------  322 (1255)
T KOG0444|consen  254 GNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH---------  322 (1255)
T ss_pred             cCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH---------
Confidence            8888743 223344456777777777776 56777777777777777666664 12333333333333322         


Q ss_pred             CCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEE
Q 047486          510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAM  589 (776)
Q Consensus       510 ~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  589 (776)
                                                                                                      
T Consensus       323 --------------------------------------------------------------------------------  322 (1255)
T KOG0444|consen  323 --------------------------------------------------------------------------------  322 (1255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccC---
Q 047486          590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN---  666 (776)
Q Consensus       590 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N---  666 (776)
                       .++|.+. ..|+.+..|..|+.|.|++|++. ..|+++.-++.|+.|||..|.-.-..|.--..-++|+.-|+..-   
T Consensus       323 -aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~  399 (1255)
T KOG0444|consen  323 -AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQH  399 (1255)
T ss_pred             -hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhh
Confidence             2333332 46777777888888888888887 67888888888888888888765343332122245555444321   


Q ss_pred             --cceecCCC
Q 047486          667 --RLWGRIPR  674 (776)
Q Consensus       667 --~l~g~iP~  674 (776)
                        ++.|..|.
T Consensus       400 QlrlAG~~pa  409 (1255)
T KOG0444|consen  400 QLRLAGQMPA  409 (1255)
T ss_pred             HHhhccCCcc
Confidence              45565553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.6e-32  Score=278.32  Aligned_cols=366  Identities=23%  Similarity=0.329  Sum_probs=292.1

Q ss_pred             CCCCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCC
Q 047486            2 SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLP   81 (776)
Q Consensus         2 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~   81 (776)
                      +-|+..+-.|+++|.++  .+.+|.....++.+++|.|....+... |+.++.+ .+|++|.+++|++. .+-..++.++
T Consensus         4 gVLpFVrGvDfsgNDFs--g~~FP~~v~qMt~~~WLkLnrt~L~~v-PeEL~~l-qkLEHLs~~HN~L~-~vhGELs~Lp   78 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFS--GDRFPHDVEQMTQMTWLKLNRTKLEQV-PEELSRL-QKLEHLSMAHNQLI-SVHGELSDLP   78 (1255)
T ss_pred             cccceeecccccCCcCC--CCcCchhHHHhhheeEEEechhhhhhC-hHHHHHH-hhhhhhhhhhhhhH-hhhhhhccch
Confidence            34778899999999987  468999999999999999998888765 9999999 99999999999987 5667788999


Q ss_pred             CCCEEeccCCCCcc-ccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCC
Q 047486           82 NLQILFLNLNSQLT-GYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSY  160 (776)
Q Consensus        82 ~L~~L~Ls~n~~~~-~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  160 (776)
                      .|+.+++..| ++. ..+|..++.     ++.|++||||+|++. ..|..+..-+++-.|+|++|+|..+--..|-++..
T Consensus        79 ~LRsv~~R~N-~LKnsGiP~diF~-----l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   79 RLRSVIVRDN-NLKNSGIPTDIFR-----LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD  151 (1255)
T ss_pred             hhHHHhhhcc-ccccCCCCchhcc-----cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence            9999999999 553 457777544     444999999999999 78999999999999999999999544455689999


Q ss_pred             CCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCC-cCCCCCCCCCCcEEEccCCcCC-CCCCccccCCCCCCEEECC
Q 047486          161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR-GTIPNSTFQLVNLTILDLS  238 (776)
Q Consensus       161 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls  238 (776)
                      |-.||||+|++. .+|..+..+..|++|+|++|.+.. .......+++|++|.+++.+-+ ..+|..+..+.+|..+|+|
T Consensus       152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence            999999999998 778889999999999999998763 1111222378899999886543 3688999999999999999


Q ss_pred             CCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCcc
Q 047486          239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRI  318 (776)
Q Consensus       239 ~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l  318 (776)
                      .|.+. .+| ..+-++++|+.|+||+|+|+.+....     ....+|+.|+++.|+++.+|+++..+++|+.|.+.+|++
T Consensus       231 ~N~Lp-~vP-ecly~l~~LrrLNLS~N~iteL~~~~-----~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  231 ENNLP-IVP-ECLYKLRNLRRLNLSGNKITELNMTE-----GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             ccCCC-cch-HHHhhhhhhheeccCcCceeeeeccH-----HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence            99997 666 77889999999999999988776443     235688999999999999999999999999999999987


Q ss_pred             cc-ccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCC
Q 047486          319 QG-RISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLS  397 (776)
Q Consensus       319 ~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  397 (776)
                      +- -+|..+ +.+..|+.+..++|.+.                                           .+|..++.|.
T Consensus       304 ~FeGiPSGI-GKL~~Levf~aanN~LE-------------------------------------------lVPEglcRC~  339 (1255)
T KOG0444|consen  304 TFEGIPSGI-GKLIQLEVFHAANNKLE-------------------------------------------LVPEGLCRCV  339 (1255)
T ss_pred             cccCCccch-hhhhhhHHHHhhccccc-------------------------------------------cCchhhhhhH
Confidence            62 244444 55555544444443332                                           5667777777


Q ss_pred             CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCc
Q 047486          398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS  433 (776)
Q Consensus       398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~  433 (776)
                      .|+.|.|+.|++. .+|+++.-++ .|+.||+.+|.
T Consensus       340 kL~kL~L~~NrLi-TLPeaIHlL~-~l~vLDlreNp  373 (1255)
T KOG0444|consen  340 KLQKLKLDHNRLI-TLPEAIHLLP-DLKVLDLRENP  373 (1255)
T ss_pred             HHHHhccccccee-echhhhhhcC-CcceeeccCCc
Confidence            7777777777776 6777665444 57777777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=6.9e-26  Score=221.26  Aligned_cols=291  Identities=28%  Similarity=0.290  Sum_probs=186.1

Q ss_pred             CCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccC-CCCCccccccccccccCC
Q 047486          204 LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN-NSLLSFTSSANISIKYSL  282 (776)
Q Consensus       204 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~l  282 (776)
                      .++.-..++|..|.|+...+.+|..+++|++|||++|.|+ .|.+++|.++++|..|-+.+ |+|++++...    |..+
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~----F~gL  139 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGA----FGGL  139 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhH----hhhH
Confidence            3466778888888888777778888999999999999988 77778899998888877766 8888887754    6678


Q ss_pred             CCccEEeccCCCCCCcc-hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccC
Q 047486          283 PSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN  361 (776)
Q Consensus       283 ~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  361 (776)
                      .+++.|.+.-|++..++ +.|..++++..|.+.+|.+. .++...|..+..++.+.+..|.+.....-.+  +.. ++..
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~w--la~-~~a~  215 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPW--LAD-DLAM  215 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccch--hhh-HHhh
Confidence            88888888888888776 57888999999999999887 7777777888888888887776332211100  000 0000


Q ss_pred             cccCCCCCCCCCCCcEEEccCCcCccCCCccccC-CCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcc
Q 047486          362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICS-LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD  440 (776)
Q Consensus       362 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~  440 (776)
                      +.+.   ........-..+.+..+..+.+..|.. ..++..--.+.+...+.-|..-+...++|++|++++|+|+++-+.
T Consensus       216 ~~ie---tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~  292 (498)
T KOG4237|consen  216 NPIE---TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG  292 (498)
T ss_pred             chhh---cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence            0000   000111111122222222222222211 111211112223333344443333334677777777777777777


Q ss_pred             cccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486          441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF  506 (776)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  506 (776)
                      +|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++
T Consensus       293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            777777777777777777666666777777777777777777777777777777777777776665

>PLN03210 Resistant to P

Probab=99.89  E-value=1.3e-21  Score=236.24  Aligned_cols=312  Identities=20%  Similarity=0.246  Sum_probs=174.9

Q ss_pred             CCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCC
Q 047486          161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN  240 (776)
Q Consensus       161 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  240 (776)
                      |+.|++.++.+. .+|..+ ...+|++|++++|.+.........+++|+.|+++++.....+|. +..+++|+.|++++|
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDC  667 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCC
Confidence            555555544443 334333 23445555555554443322222334555555544433223332 444555555555554


Q ss_pred             cCccccCccccCCCCCCCEEeccCC-CCCccccccccccccCCCCccEEeccCCC-CCCcchhhhCCcccceEecccCcc
Q 047486          241 NLSGAIRFDQFSKLKKLQFLDLSNN-SLLSFTSSANISIKYSLPSLKVLRFAYCN-ITEFPGFLRNSEELYLLDLSNNRI  318 (776)
Q Consensus       241 ~l~~~i~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~~~~L~~L~L~~n~l  318 (776)
                      .....+| ..+..+++|+.|++++| .++.++...      .+++|+.|++++|. +..+|..   ..+|+.|++++|.+
T Consensus       668 ~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i------~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i  737 (1153)
T PLN03210        668 SSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI------NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI  737 (1153)
T ss_pred             CCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC------CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence            4333333 33445555555555543 222222211      34555555555553 2233321   23556666666665


Q ss_pred             ccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCC
Q 047486          319 QGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSS  398 (776)
Q Consensus       319 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  398 (776)
                      . .+|...  .+++|++|.+.++....+... .          ..+.......+++|+.|++++|...+.+|.+++++++
T Consensus       738 ~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~-~----------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~  803 (1153)
T PLN03210        738 E-EFPSNL--RLENLDELILCEMKSEKLWER-V----------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK  803 (1153)
T ss_pred             c-cccccc--cccccccccccccchhhcccc-c----------cccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence            4 444332  345555555544322111000 0          0001111123467888888888877788888889999


Q ss_pred             CCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486          399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG  478 (776)
Q Consensus       399 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  478 (776)
                      |+.|++++|...+.+|... .+ ++|+.|++++|.....+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|+++
T Consensus       804 L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~  877 (1153)
T PLN03210        804 LEHLEIENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN  877 (1153)
T ss_pred             CCEEECCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence            9999998886555777765 33 47899999887654444433   357888899998887 567788888899999998


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCc
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNR  505 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~  505 (776)
                      +|+-...+|..+..+++|+.+++++|.
T Consensus       878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        878 GCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCcCccCcccccccCCCeeecCCCc
Confidence            865545567777788888888888775

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2e-21  Score=234.63  Aligned_cols=305  Identities=20%  Similarity=0.232  Sum_probs=213.1

Q ss_pred             CCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcc-cccccc-ccccccCEEecc
Q 047486          283 PSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNF-MTHIEL-HPWMNITTLDLR  360 (776)
Q Consensus       283 ~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~l~  360 (776)
                      ++|+.|.+.++.+..+|..+ ...+|+.|++.+|++. .++... ..+++|+.|+++++. ++.++. ..+++|++|+++
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~  665 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS  665 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence            45666777666666666554 3566777777776665 444443 556667777776653 333332 234567777777


Q ss_pred             CcccCCCCCCC---CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCcc
Q 047486          361 NNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH  437 (776)
Q Consensus       361 ~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~  437 (776)
                      +|.....+|..   +++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..    ..+|++|++++|.+.. 
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-  739 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-  739 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-
Confidence            76655555433   5777888888876666677655 6788888888888665566642    2478888888888764 


Q ss_pred             CcccccCCCCccEEEcCCCcCc-------CCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccC
Q 047486          438 IHDTFANASHLRSLDLNSNKLE-------GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL  510 (776)
Q Consensus       438 ~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  510 (776)
                      +|..+ .+++|+.|.+.++...       ...+.....+++|+.|++++|.....+|.+++++++|+.|++++|...+.+
T Consensus       740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            34433 5677888888764321       122223344578999999998888888888999999999999988766666


Q ss_pred             CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEe
Q 047486          511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD  590 (776)
Q Consensus       511 ~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  590 (776)
                      |...   .+++|+.|++++|.....+|..                                           ..+++.|+
T Consensus       819 P~~~---~L~sL~~L~Ls~c~~L~~~p~~-------------------------------------------~~nL~~L~  852 (1153)
T PLN03210        819 PTGI---NLESLESLDLSGCSRLRTFPDI-------------------------------------------STNISDLN  852 (1153)
T ss_pred             CCCC---CccccCEEECCCCCcccccccc-------------------------------------------ccccCEeE
Confidence            6543   5788999999988654444321                                           34678899


Q ss_pred             cCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccC
Q 047486          591 FSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL  644 (776)
Q Consensus       591 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  644 (776)
                      |++|.++ .+|..+..+++|+.|+|++|+-...+|..+..++.|+.+++++|.-
T Consensus       853 Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        853 LSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            9999998 6788899999999999998554446888888999999999999853

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.4e-21  Score=218.29  Aligned_cols=261  Identities=25%  Similarity=0.308  Sum_probs=127.1

Q ss_pred             cceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCcc
Q 047486          308 LYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG  387 (776)
Q Consensus       308 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  387 (776)
                      -..|+++++.++ .+|..+.   ++|+.|++.+|+++.++                      ..+++|++|++++|+++.
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP----------------------~lp~~Lk~LdLs~N~Lts  256 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP----------------------ALPPELRTLEVSGNQLTS  256 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC----------------------CCCCCCcEEEecCCccCc
Confidence            445666666665 4555431   24555666666555543                      223444444555544442


Q ss_pred             CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhh
Q 047486          388 KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA  467 (776)
Q Consensus       388 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  467 (776)
                       +|..   .++|+.|++++|.+. .+|..    +.+|+.|++++|+++.. |.   ..++|+.|++++|++++. |..  
T Consensus       257 -LP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l--  320 (788)
T PRK15387        257 -LPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL--  320 (788)
T ss_pred             -ccCc---ccccceeeccCCchh-hhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC--
Confidence             2221   234555555555554 33331    12455555555555432 21   124455555555555532 221  


Q ss_pred             cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486          468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM  547 (776)
Q Consensus       468 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l  547 (776)
                       ..+|+.|++++|++++ +|..   ..+|+.|++++|++.+ +|..     .++|+.|++++|.+++ +|..        
T Consensus       321 -p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l--------  380 (788)
T PRK15387        321 -PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL--------  380 (788)
T ss_pred             -cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc--------
Confidence             1234455555555543 2221   1345555555555543 1211     2345555555555552 3321        


Q ss_pred             hhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcc
Q 047486          548 KNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS  627 (776)
Q Consensus       548 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  627 (776)
                                                         ...|+.|++++|++++ +|..   .++|+.|++++|++++ +|..
T Consensus       381 -----------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l  420 (788)
T PRK15387        381 -----------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML  420 (788)
T ss_pred             -----------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc
Confidence                                               1234556666666653 3322   2456666666666653 4432


Q ss_pred             ccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486          628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  674 (776)
Q Consensus       628 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  674 (776)
                      .   .+|+.|++++|+++ .+|..+..++.|+.|+|++|+|+|.+|.
T Consensus       421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            2   34556666666665 4566666666666666666666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.3e-21  Score=216.50  Aligned_cols=66  Identities=24%  Similarity=0.364  Sum_probs=46.2

Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccc
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV  655 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  655 (776)
                      .|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            45667777777764 4543   235677788888877 677777788888888888888887777766443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=2.2e-23  Score=203.84  Aligned_cols=149  Identities=26%  Similarity=0.322  Sum_probs=123.8

Q ss_pred             eccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEEC-CCCcCCc
Q 047486          358 DLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHL-KNNSLEG  436 (776)
Q Consensus       358 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L-~~n~l~~  436 (776)
                      +.++-.++.....-++....++|..|+|+...+.+|..+++|+.||||+|+|+..-|++|.++. ++..|.+ ++|+|+.
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITD  130 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhh
Confidence            3333344433334467788999999999999999999999999999999999966677887776 5655554 5599999


Q ss_pred             cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccc
Q 047486          437 HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY  507 (776)
Q Consensus       437 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  507 (776)
                      +..+.|.++.+|+.|.+.-|++.-+..+.|..+++|..|.+.+|.+..+....|..+..++.+.+..|++.
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence            98999999999999999999999888899999999999999999998666668999999999999998853

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.81  E-value=1.5e-19  Score=203.56  Aligned_cols=225  Identities=25%  Similarity=0.335  Sum_probs=131.0

Q ss_pred             CCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccce
Q 047486          231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYL  310 (776)
Q Consensus       231 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~  310 (776)
                      .|+.|++++|+++ .+|...+   ++|++|++++|.++.++...       .++|+.|++++|.+..+|..+.  .+|+.
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l-------~~~L~~L~Ls~N~L~~LP~~l~--s~L~~  266 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATL-------PDTIQEMELSINRITELPERLP--SALQS  266 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhh-------hccccEEECcCCccCcCChhHh--CCCCE
Confidence            4455555555554 3332211   34555555555544443321       2345555555555555554432  35666


Q ss_pred             EecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCC
Q 047486          311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP  390 (776)
Q Consensus       311 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~  390 (776)
                      |++++|+++ .+|..+.   ++|+.|++++|+++.++.....+|+.|++++|.++......+++|+.|++++|.+++ +|
T Consensus       267 L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        267 LDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LP  341 (754)
T ss_pred             EECcCCccC-ccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CC
Confidence            666666665 3444331   356666666666665544333456666666666664332334567777777777764 55


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChh----h
Q 047486          391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS----L  466 (776)
Q Consensus       391 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l  466 (776)
                      ..+.  ++|+.|++++|++. .+|..+.   ++|+.|++++|.++.+ |..+.  ..|+.|++++|+++ .+|..    +
T Consensus       342 ~~l~--~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~  411 (754)
T PRK15370        342 ASLP--PELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLV-RLPESLPHFR  411 (754)
T ss_pred             hhhc--CcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcc-cCchhHHHHh
Confidence            5443  57888888888877 5676542   3688888888888754 33332  35788888888887 33433    3


Q ss_pred             hcCCCCcEEEcCCCccC
Q 047486          467 AKCIKLEVVNVGKNMIS  483 (776)
Q Consensus       467 ~~l~~L~~L~L~~n~l~  483 (776)
                      ..++.+..|++.+|+++
T Consensus       412 ~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        412 GEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hcCCCccEEEeeCCCcc
Confidence            44577788888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=7.4e-19  Score=198.06  Aligned_cols=118  Identities=30%  Similarity=0.418  Sum_probs=53.9

Q ss_pred             CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486          398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV  477 (776)
Q Consensus       398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  477 (776)
                      +|+.|++++|++. .+|..+.   .+|+.|++++|++++. |..+.  ++|+.|++++|.++. +|..+  .++|+.|++
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~L  332 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEA  332 (754)
T ss_pred             CCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CCccc--cccceeccc
Confidence            4555555555554 3444322   2455555555555432 22221  245555555555553 22222  245566666


Q ss_pred             CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486          478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT  533 (776)
Q Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~  533 (776)
                      ++|.+++ +|..+.  ++|+.|++++|++.. +|...    .+.|+.|++++|.++
T Consensus       333 s~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        333 GENALTS-LPASLP--PELQVLDVSKNQITV-LPETL----PPTITTLDVSRNALT  380 (754)
T ss_pred             cCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh----cCCcCEEECCCCcCC
Confidence            6665554 333221  455555555555442 22211    134555555555555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.3e-18  Score=183.18  Aligned_cols=284  Identities=20%  Similarity=0.136  Sum_probs=155.1

Q ss_pred             EEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCC----ChhhHhhccCCccEEEcCCCCCCc------cCCCCCC
Q 047486            9 HLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLI----KPFSLLNLSSTMTDLDLGGTRIKG------NFPDDIF   78 (776)
Q Consensus         9 ~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~~L~~L~Ls~~~l~~------~~~~~l~   78 (776)
                      .|+|+++.+.  ...+...+..+++|+.|+++++.++..    ++..+... +++++++++++.+.+      .++..+.
T Consensus         2 ~l~L~~~~l~--~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLK--TERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCccc--ccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHH
Confidence            4677777775  245566677778888899988887553    24444555 678888888887652      1234456


Q ss_pred             CCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccc----cccccccCC-CCCCEEEccCCcccCC---
Q 047486           79 RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG----SIPTSIGNL-TRATEIAFASNHFTGQ---  150 (776)
Q Consensus        79 ~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~---  150 (776)
                      ++++|++|++++| .+.+..+..+.. .... ++|++|++++|.+++    .+...+..+ ++|+.|++++|.+++.   
T Consensus        79 ~~~~L~~L~l~~~-~~~~~~~~~~~~-l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          79 KGCGLQELDLSDN-ALGPDGCGVLES-LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             hcCceeEEEccCC-CCChhHHHHHHH-Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            6778888888777 555433332111 0011 337777777777663    223344555 6777777777776632   


Q ss_pred             -CchhhcCCCCCCEEEccCCcCCCC----CCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCcc
Q 047486          151 -LPHHVSGLSYLTTFDLSGNYFQGG----VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNS  225 (776)
Q Consensus       151 -~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~  225 (776)
                       ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+...                   ..+...
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------------------~~l~~~  216 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-------------------SALAET  216 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-------------------HHHHHH
Confidence             233455666777777777766632    22334445566666666665542110                   011222


Q ss_pred             ccCCCCCCEEECCCCcCccccCcc----ccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCc---
Q 047486          226 TFQLVNLTILDLSSNNLSGAIRFD----QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF---  298 (776)
Q Consensus       226 ~~~l~~L~~L~Ls~n~l~~~i~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---  298 (776)
                      +..+++|++|++++|.+.+.....    .....+.|++|++++|.+++............+++|+++++++|.++.-   
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~  296 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ  296 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence            334455555555555554211100    0112355666666666543222111112222345666666666666532   


Q ss_pred             --chhhhCC-cccceEecccCc
Q 047486          299 --PGFLRNS-EELYLLDLSNNR  317 (776)
Q Consensus       299 --p~~l~~~-~~L~~L~L~~n~  317 (776)
                        ...+... +.|+.+++.+|.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         297 LLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHhhcCCchhhcccCCCC
Confidence              2233333 577777777664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=3.5e-18  Score=179.88  Aligned_cols=239  Identities=23%  Similarity=0.228  Sum_probs=108.7

Q ss_pred             cccCCCCCCEEEccCCcCcc------cCCchhhhcCCCccEEECCCCcCCccCcccccCCCC---ccEEEcCCCcCcCC-
Q 047486          392 SICSLSSLQYLSLSDNNLSG------TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASH---LRSLDLNSNKLEGP-  461 (776)
Q Consensus       392 ~~~~~~~L~~L~Ls~n~l~~------~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~~-  461 (776)
                      .+...+.+++++++++.+.+      .++..+... ++|+.|++++|.+.+..+..+..+..   |++|++++|++++. 
T Consensus        46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~  124 (319)
T cd00116          46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG  124 (319)
T ss_pred             HHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH
Confidence            33444455555555554431      112222332 24555555555554433333333333   55555555555421 


Q ss_pred             ---CChhhhcC-CCCcEEEcCCCccCcc----cchhhcCCCCcCEEEccCCcccccCCCCC--CCcCCCCccEEeCCCCc
Q 047486          462 ---LPRSLAKC-IKLEVVNVGKNMISDS----FPCWLGSLHELKILVLRSNRFYGPLCNSN--ITFPFQALRIIDLSHNE  531 (776)
Q Consensus       462 ---~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~~LdLs~n~  531 (776)
                         +...+..+ ++|+.|++++|.+++.    ++..+..++.|++|++++|.+.+......  .....++|+.|++++|.
T Consensus       125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence               12233344 5556666666655522    22334445555555555555543110000  00123455566665555


Q ss_pred             CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhcc-----
Q 047486          532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGN-----  606 (776)
Q Consensus       532 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~-----  606 (776)
                      +++.....+.                                    .....++.|+.|++++|.+++.....+..     
T Consensus       205 i~~~~~~~l~------------------------------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~  248 (319)
T cd00116         205 LTDEGASALA------------------------------------ETLASLKSLEVLNLGDNNLTDAGAAALASALLSP  248 (319)
T ss_pred             cChHHHHHHH------------------------------------HHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence            5421110000                                    00011345566666666665432222221     


Q ss_pred             CCCCCEEeCCCCcCcc----cCCccccccCCCcEEeccCccCcCC----Cchhhccc-cccccccCccCc
Q 047486          607 FKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGR----IPEQLLSV-TALALLNLSYNR  667 (776)
Q Consensus       607 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~  667 (776)
                      .+.|+.|++++|.++.    .+...+..+++|+.+|+++|.++..    ....+... +.|+.+++.+|+
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            2566666666666651    2233444556666666666666633    33333333 456666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.1e-17  Score=143.57  Aligned_cols=158  Identities=26%  Similarity=0.455  Sum_probs=99.6

Q ss_pred             CCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCccc
Q 047486           30 NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRE  109 (776)
Q Consensus        30 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~  109 (776)
                      ++.+.+.|.||+|.++.. |..++.+ .+|+.|++++|.++ .+|.+++.+++|+.|+++-| ++. .+|..     |+.
T Consensus        31 ~~s~ITrLtLSHNKl~~v-ppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmn-rl~-~lprg-----fgs  100 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVV-PPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN-RLN-ILPRG-----FGS  100 (264)
T ss_pred             chhhhhhhhcccCceeec-CCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchh-hhh-cCccc-----cCC
Confidence            344455566666666655 4456666 66777777766666 66666666777777766666 443 34544     333


Q ss_pred             CCCCcEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 047486          110 LDLLSVLDIGFCNFTG-SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSI  188 (776)
Q Consensus       110 L~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  188 (776)
                      ++.|++||+++|++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL  178 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence            3336677776666653 45666666666666777777666 56666677777777777766665 566666777777777


Q ss_pred             EccCCcCCCcC
Q 047486          189 DLSKNMLNGPI  199 (776)
Q Consensus       189 ~l~~n~l~~~~  199 (776)
                      .+.+|.++-.+
T Consensus       179 hiqgnrl~vlp  189 (264)
T KOG0617|consen  179 HIQGNRLTVLP  189 (264)
T ss_pred             hcccceeeecC
Confidence            77777665433

>PLN03150 hypothetical protein; Provisional

Probab=99.56  E-value=9.5e-15  Score=164.76  Aligned_cols=118  Identities=36%  Similarity=0.608  Sum_probs=105.1

Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  664 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  664 (776)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceecCCCCCC--CCcccccccccccCCCCCCCCCCCC
Q 047486          665 YNRLWGRIPRGNQ--FNTFENDSYIGNIHLCGEPLTVRCS  702 (776)
Q Consensus       665 ~N~l~g~iP~~~~--~~~~~~~~~~~n~~l~g~pl~~~C~  702 (776)
                      +|+++|.+|....  +.......+.+|..+||.|-...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  1233455678999999877555564

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=8.8e-17  Score=139.68  Aligned_cols=149  Identities=26%  Similarity=0.421  Sum_probs=84.7

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK  192 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  192 (776)
                      ++.|.||+|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||+.+
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence            555666666666 45556666666666666666666 45666666666666666666665 5666666666666666666


Q ss_pred             CcCCC--cCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486          193 NMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL  267 (776)
Q Consensus       193 n~l~~--~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i  267 (776)
                      |++..  .+..|..++.|+.|++++|.+. .+|..++++++|+.|.+..|.+- .+| ..++.++.|++|.+.+|++
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp-keig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP-KEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc-HHHHHHHHHHHHhccccee
Confidence            66553  1122222244555555555554 45555555666666666555554 334 3344444444444444443

>PLN03150 hypothetical protein; Provisional

Probab=99.19  E-value=4.1e-11  Score=135.50  Aligned_cols=113  Identities=35%  Similarity=0.543  Sum_probs=99.5

Q ss_pred             CccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccc
Q 047486          521 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEI  600 (776)
Q Consensus       521 ~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  600 (776)
                      .++.|+|++|.+.|.+|..+ .                                       .++.|+.|+|++|.++|.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i-~---------------------------------------~L~~L~~L~Ls~N~l~g~i  458 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI-S---------------------------------------KLRHLQSINLSGNSIRGNI  458 (623)
T ss_pred             EEEEEECCCCCccccCCHHH-h---------------------------------------CCCCCCEEECCCCcccCcC
Confidence            47889999999999888653 1                                       1567899999999999999


Q ss_pred             hhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccc-cccccccCccCcceecCC
Q 047486          601 PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSYNRLWGRIP  673 (776)
Q Consensus       601 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP  673 (776)
                      |..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+ ..+..+++++|+..+.+|
T Consensus       459 P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999999999999999999999999999999999999998764 467789999997544444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=5.9e-12  Score=122.89  Aligned_cols=191  Identities=20%  Similarity=0.220  Sum_probs=94.6

Q ss_pred             CCCCCEEeCCCCCCccc-cCChhHhhcCCCCCCEEeCCCccC---CCCChhhH-------hhccCCccEEEcCCCCCCcc
Q 047486            4 LSKLTHLDLSFCVLTIE-QRTFDLLASNLTKLSLLHLGATNM---SLIKPFSL-------LNLSSTMTDLDLGGTRIKGN   72 (776)
Q Consensus         4 l~~L~~L~Ls~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~---~~~~~~~~-------~~l~~~L~~L~Ls~~~l~~~   72 (776)
                      +..+++++||+|.+... ...+...+.+.++|+..++++-..   ...+|+.+       ... ++|++|+||+|.+...
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC-PKLQKLDLSDNAFGPK  107 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC-CceeEeeccccccCcc
Confidence            45677777777776421 123445566777777777775422   22234332       233 4777777777776544


Q ss_pred             CCCC----CCCCCCCCEEeccCCCCcccc----CCCCCC----CCCcccCCCCcEEEccCCccccc----ccccccCCCC
Q 047486           73 FPDD----IFRLPNLQILFLNLNSQLTGY----LPKSNW----SSPLRELDLLSVLDIGFCNFTGS----IPTSIGNLTR  136 (776)
Q Consensus        73 ~~~~----l~~l~~L~~L~Ls~n~~~~~~----~p~~~~----~~~l~~L~~L~~L~Ls~n~l~~~----~~~~l~~l~~  136 (776)
                      .+..    +.++..|++|.|.+| .+.-.    +-..+.    .+....-..|+++...+|++...    +...|..++.
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            3332    345677777777776 43310    000000    01112223366666666655432    1223444555


Q ss_pred             CCEEEccCCcccCC----CchhhcCCCCCCEEEccCCcCCCC----CCccccCCCCCCEEEccCCcCC
Q 047486          137 ATEIAFASNHFTGQ----LPHHVSGLSYLTTFDLSGNYFQGG----VPSWLFTLPSLLSIDLSKNMLN  196 (776)
Q Consensus       137 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~  196 (776)
                      |+.+.+..|.|...    +..+|..+++|++|||..|.++..    +...+..+++|++|++++|.+.
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            55665555554311    113345555555555555555421    1233344455555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2e-11  Score=122.58  Aligned_cols=156  Identities=24%  Similarity=0.183  Sum_probs=59.9

Q ss_pred             CCCcEEEccCCccccccc--ccccCCCCCCEEEccCCcccCCC--chhhcCCCCCCEEEccCCcCCCCCCcc-ccCCCCC
Q 047486          111 DLLSVLDIGFCNFTGSIP--TSIGNLTRATEIAFASNHFTGQL--PHHVSGLSYLTTFDLSGNYFQGGVPSW-LFTLPSL  185 (776)
Q Consensus       111 ~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L  185 (776)
                      ++|+.+.|.++.... .+  .....|++++.|||+.|-+..-.  ..-...+++|+.|+++.|.+....... -..+++|
T Consensus       121 kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  121 KKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            334444444444331 11  13334455555555554443211  122234455555555555443211111 1133444


Q ss_pred             CEEEccCCcCCCc-C-CCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEecc
Q 047486          186 LSIDLSKNMLNGP-I-DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS  263 (776)
Q Consensus       186 ~~L~l~~n~l~~~-~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  263 (776)
                      +.|.++.|.++.. + ......++|+.|+|.+|...........-+..|+.|||++|.+...-.....+.++.|+.|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            4455554444320 0 0011124444444444432212222222344444555554444322111223344444444444


Q ss_pred             CCCC
Q 047486          264 NNSL  267 (776)
Q Consensus       264 ~n~i  267 (776)
                      .+.+
T Consensus       280 ~tgi  283 (505)
T KOG3207|consen  280 STGI  283 (505)
T ss_pred             ccCc
Confidence            4443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=4.6e-10  Score=121.57  Aligned_cols=149  Identities=34%  Similarity=0.479  Sum_probs=76.9

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK  192 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  192 (776)
                      |+.|++++|++. .+|..++.+++|+.|++++|.++ .+|...+..+.|+.|++++|.+. .+|........|+++.+++
T Consensus       142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN  218 (394)
T ss_pred             cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence            555555555555 33344555555555555555555 33433335555555555555555 3444334444455555555


Q ss_pred             CcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          193 NMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       193 n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      |.+...+........+..+.+.+|++. ..+..+..++.++.|++++|.++ .++.  +..+.+++.|++++|.+.
T Consensus       219 N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         219 NSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             CcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc--ccccCccCEEeccCcccc
Confidence            533222222222244555555555554 22455556666666666666665 4432  566666666666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.8e-11  Score=121.43  Aligned_cols=207  Identities=19%  Similarity=0.193  Sum_probs=103.8

Q ss_pred             CCccEEEcCCCCCCccCC--CCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccc-cC
Q 047486           57 STMTDLDLGGTRIKGNFP--DDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSI-GN  133 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l-~~  133 (776)
                      ++|+++.|.++.+. ..+  .....|++++.||||.| -+..--|..   .-...|++|+.|+++.|.+........ ..
T Consensus       121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~---~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRN-LFHNWFPVL---KIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HhhhheeecCcccc-ccchhhhhhhCCcceeecchhh-hHHhHHHHH---HHHHhcccchhcccccccccCCccccchhh
Confidence            55666666655554 222  23344666666666665 332110000   002334446666666665542221111 24


Q ss_pred             CCCCCEEEccCCcccCCCc-hhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcC--CCCCCCCCCcE
Q 047486          134 LTRATEIAFASNHFTGQLP-HHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQD  210 (776)
Q Consensus       134 l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~L~~  210 (776)
                      +++|+.|.++.|.++.... .....+++|+.|+|..|............+..|++|+|++|++....  +....++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            5667777777777663322 22345677777777777533233333445666777777777665432  22233355666


Q ss_pred             EEccCCcCCCC-CCcc-----ccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          211 VRLEENEIRGT-IPNS-----TFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       211 L~L~~n~i~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      |+++.+.+... .|+.     ...+++|++|+++.|++...-....+..+++|+.|.+..|.+.
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            66666555432 1222     2345666666666666642222234444555555555555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=4.8e-10  Score=121.43  Aligned_cols=177  Identities=32%  Similarity=0.425  Sum_probs=86.4

Q ss_pred             CcEEEccCCcccccccccccCCC-CCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLT-RATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      ++.|++.+|.++ .++......+ +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|...+..+.|+     
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~-----  189 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN-----  189 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh-----
Confidence            555555555555 3333444442 5555555555544 33334445555555555555554 3333333444444     


Q ss_pred             CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486          192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT  271 (776)
Q Consensus       192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~  271 (776)
                                        .|++++|++. .+|........|+++.+++|.+. .++ ..+.++.++..+.+.+|++..++
T Consensus       190 ------------------~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~-~~~~~~~~l~~l~l~~n~~~~~~  248 (394)
T COG4886         190 ------------------NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELL-SSLSNLKNLSGLELSNNKLEDLP  248 (394)
T ss_pred             ------------------heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecc-hhhhhcccccccccCCceeeecc
Confidence                              4455555444 34443333444555555555322 111 33445555555555555543321


Q ss_pred             cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCC
Q 047486          272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISK  324 (776)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~  324 (776)
                           .....+++++.|++++|.++.++. +....+++.|++++|.+....+.
T Consensus       249 -----~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         249 -----ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -----chhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence                 112244556666666666665555 56666777777777766644433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=2e-11  Score=119.27  Aligned_cols=94  Identities=27%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             cccCCCCCCEEECCCCcCccc---cCccccCCCCCCCEEeccCCCCCccccccccccc-cCCCCccEEeccCCCCCC---
Q 047486          225 STFQLVNLTILDLSSNNLSGA---IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIK-YSLPSLKVLRFAYCNITE---  297 (776)
Q Consensus       225 ~~~~l~~L~~L~Ls~n~l~~~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~---  297 (776)
                      .+..+++|++|||.+|-++..   .-...+..+++|++|++++|.+..-........+ ...|.|+.+.+.+|.++.   
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            445566666666666655411   1113344555566666666654332221111111 134556666666665541   


Q ss_pred             --cchhhhCCcccceEecccCcc
Q 047486          298 --FPGFLRNSEELYLLDLSNNRI  318 (776)
Q Consensus       298 --lp~~l~~~~~L~~L~L~~n~l  318 (776)
                        +...+...+.|..|+|++|++
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCcccc
Confidence              222344456666666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=3.3e-11  Score=124.69  Aligned_cols=192  Identities=23%  Similarity=0.289  Sum_probs=126.6

Q ss_pred             CCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc-cccCEEecc
Q 047486          282 LPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW-MNITTLDLR  360 (776)
Q Consensus       282 l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~  360 (776)
                      +.--...+++.|++.++|..+..+..|+.+.+..|.+. .+|... ..+..|.+++++.|+++..+...| --|+.|.++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s  151 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS  151 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence            34444556666666666655555666666666666665 455554 556666666666666666655443 346666666


Q ss_pred             CcccCCCCCC--CCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccC
Q 047486          361 NNRIQGSILV--PPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI  438 (776)
Q Consensus       361 ~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~  438 (776)
                      +|+++.....  ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..+  .|..||++.|++. .+
T Consensus       152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-ec
Confidence            6666532221  3566677777777776 56777888888888888888887 778777754  3888888888887 56


Q ss_pred             cccccCCCCccEEEcCCCcCcCCCChhhhc---CCCCcEEEcCCCc
Q 047486          439 HDTFANASHLRSLDLNSNKLEGPLPRSLAK---CIKLEVVNVGKNM  481 (776)
Q Consensus       439 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~  481 (776)
                      |..|..++.|++|.|.+|.+. ..|..+.-   ..=-++|+..-++
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            778888888888888888887 45544432   2234556665553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1e-10  Score=111.44  Aligned_cols=125  Identities=28%  Similarity=0.345  Sum_probs=59.1

Q ss_pred             CCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccC
Q 047486          185 LLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN  264 (776)
Q Consensus       185 L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~  264 (776)
                      |+++|+++|.++.........+.++.|+++.|.+.. + ..+..+++|+.||||+|.++ .+. ++-.++.+++.|.++.
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhh-hhHhhhcCEeeeehhh
Confidence            333444444333333333333444444444444431 1 12444555555555555554 222 3334455555555555


Q ss_pred             CCCCccccccccccccCCCCccEEeccCCCCCCcc--hhhhCCcccceEecccCccc
Q 047486          265 NSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQ  319 (776)
Q Consensus       265 n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~L~~n~l~  319 (776)
                      |.|.++++.-      .+-+|..|++++|+|..+.  ..++++|.|+.+.|.+|.+.
T Consensus       362 N~iE~LSGL~------KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  362 NKIETLSGLR------KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhHhhhhhhH------hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            5544444322      3445555555555555443  24556666666666666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.97  E-value=1.9e-10  Score=109.65  Aligned_cols=135  Identities=25%  Similarity=0.276  Sum_probs=80.6

Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486          157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD  236 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  236 (776)
                      ..+.|+++||++|.|+ .+.++..-.|.++.|++++|.+..... .+.+++|+.|+|++|.++ .+..+-..+-+++.|.
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            3345566666666655 445555555666666666665554333 333366666666666655 3334444566677777


Q ss_pred             CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch
Q 047486          237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG  300 (776)
Q Consensus       237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~  300 (776)
                      |++|.+. .+  ..+.++-+|..||+++|+|..+...   .....+|.|+.+.+.+|.+..+++
T Consensus       359 La~N~iE-~L--SGL~KLYSLvnLDl~~N~Ie~ldeV---~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  359 LAQNKIE-TL--SGLRKLYSLVNLDLSSNQIEELDEV---NHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhhHh-hh--hhhHhhhhheeccccccchhhHHHh---cccccccHHHHHhhcCCCccccch
Confidence            7777665 32  3456666677777777776554432   334467778888888887776665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=7.5e-10  Score=102.00  Aligned_cols=105  Identities=30%  Similarity=0.438  Sum_probs=25.9

Q ss_pred             CCCcEEEccCCcCCCCCCcccc-CCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCC
Q 047486          206 NSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPS  284 (776)
Q Consensus       206 ~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~  284 (776)
                      .++++|+|++|.|+. + +.+. .+.+|+.|++++|.++ .+  ..+..++.|++|++++|.|+++....    ...+|+
T Consensus        19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l--~~l~~L~~L~~L~L~~N~I~~i~~~l----~~~lp~   89 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL--EGLPGLPRLKTLDLSNNRISSISEGL----DKNLPN   89 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHH----HHH-TT
T ss_pred             ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc--cCccChhhhhhcccCCCCCCccccch----HHhCCc
Confidence            455666666666652 2 2333 3556666666666665 33  23555566666666666655443211    113455


Q ss_pred             ccEEeccCCCCCCcc--hhhhCCcccceEecccCccc
Q 047486          285 LKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQ  319 (776)
Q Consensus       285 L~~L~l~~n~l~~lp--~~l~~~~~L~~L~L~~n~l~  319 (776)
                      |++|++++|.|..+.  ..+..+++|+.|++.+|.++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555555555554433  23444555555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=6.2e-10  Score=102.53  Aligned_cols=128  Identities=30%  Similarity=0.282  Sum_probs=34.3

Q ss_pred             cCCCCCCEEEccCCcCCCCCCcccc-CCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCE
Q 047486          156 SGLSYLTTFDLSGNYFQGGVPSWLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI  234 (776)
Q Consensus       156 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  234 (776)
                      .+...+++|+|++|.|+. + +.++ .+.+|+.|++++|.++...                         .+..++.|++
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~-------------------------~l~~L~~L~~   68 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE-------------------------GLPGLPRLKT   68 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-------------------------T----TT--E
T ss_pred             cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc-------------------------CccChhhhhh
Confidence            344456666666666652 2 2233 3555666666666555332                         2334445555


Q ss_pred             EECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch----hhhCCcccce
Q 047486          235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG----FLRNSEELYL  310 (776)
Q Consensus       235 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~----~l~~~~~L~~  310 (776)
                      |++++|+++ .+.......+++|++|++++|+|.++...   .....+++|++|++.+|.++..+.    .+..+|+|+.
T Consensus        69 L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l---~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~  144 (175)
T PF14580_consen   69 LDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNEL---EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV  144 (175)
T ss_dssp             EE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCC---GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred             cccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHh---HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence            555555544 33211112345555555555554433321   223345555555555555554432    3566777777


Q ss_pred             Eecc
Q 047486          311 LDLS  314 (776)
Q Consensus       311 L~L~  314 (776)
                      ||-.
T Consensus       145 LD~~  148 (175)
T PF14580_consen  145 LDGQ  148 (175)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            7654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.92  E-value=3.3e-11  Score=124.70  Aligned_cols=170  Identities=25%  Similarity=0.334  Sum_probs=86.3

Q ss_pred             CEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCc
Q 047486          138 TEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENE  217 (776)
Q Consensus       138 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~  217 (776)
                      ...+++.|++. .+|..+..+..|+.+.+..|.+. .+|.++.++..|++++++.|+++..+..... --|+.|.+++|+
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-lpLkvli~sNNk  154 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCD-LPLKVLIVSNNK  154 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhc-CcceeEEEecCc
Confidence            33444444444 34444444444444444444444 4444444444455555554444432222211 234555555555


Q ss_pred             CCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCC
Q 047486          218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE  297 (776)
Q Consensus       218 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  297 (776)
                      ++ .+|+.++....|..||.+.|.+. .++ ..+..+.+|+.|.+..|++..++.+.      ..-.|..||++.|++..
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slp-sql~~l~slr~l~vrRn~l~~lp~El------~~LpLi~lDfScNkis~  225 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLP-SQLGYLTSLRDLNVRRNHLEDLPEEL------CSLPLIRLDFSCNKISY  225 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hch-HHhhhHHHHHHHHHhhhhhhhCCHHH------hCCceeeeecccCceee
Confidence            54 55555555556666666666555 444 34555555555555555555544433      12235555555555555


Q ss_pred             cchhhhCCcccceEecccCccc
Q 047486          298 FPGFLRNSEELYLLDLSNNRIQ  319 (776)
Q Consensus       298 lp~~l~~~~~L~~L~L~~n~l~  319 (776)
                      +|-.|.++..|++|.|.+|.++
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC
Confidence            6655666666666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.88  E-value=2.3e-09  Score=123.74  Aligned_cols=254  Identities=19%  Similarity=0.276  Sum_probs=140.5

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR  136 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~  136 (776)
                      ...+.+.+-+|.+. .++.+. .++.|++|-+..|......++..+    |..++.|++|||++|.--+.+|..++++-+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~f----f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEF----FRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHH----HhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            46677777666665 344333 345788888877721122333322    556666888888887766678888888888


Q ss_pred             CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcC---CCCCCCCCCcEEEc
Q 047486          137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI---DLFQLPNSLQDVRL  213 (776)
Q Consensus       137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~L  213 (776)
                      ||+|+++++.+. .+|..+.+++.|.+|++..+.-...+|.....+++|++|.+.........   .....+.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            888888888887 67888888888888888877765556666667888888887765422111   11122244444443


Q ss_pred             cCCcCCCCCCccccCCCCCC----EEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccccccccc-ccC-CCCccE
Q 047486          214 EENEIRGTIPNSTFQLVNLT----ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISI-KYS-LPSLKV  287 (776)
Q Consensus       214 ~~n~i~~~~~~~~~~l~~L~----~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~-~~~-l~~L~~  287 (776)
                      .....  .+-..+..++.|.    .+.+.++... .. ...+..+.+|+.|.+.++.+.+......... ... ++++..
T Consensus       676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~  751 (889)
T KOG4658|consen  676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK  751 (889)
T ss_pred             ecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-ee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence            22221  0111122222222    2222222222 11 1455666777777777776543222110000 001 334455


Q ss_pred             EeccCCCCCCcchhhhCCcccceEecccCccccc
Q 047486          288 LRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGR  321 (776)
Q Consensus       288 L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~  321 (776)
                      +.+.+|.....+.|....++|+.|.+..+...+.
T Consensus       752 ~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  752 VSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             HHhhccccccccchhhccCcccEEEEeccccccc
Confidence            5555554444445555566677777766655433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.1e-09  Score=82.87  Aligned_cols=59  Identities=36%  Similarity=0.546  Sum_probs=28.8

Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCcc
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK  643 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  643 (776)
                      .|+.|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555555554444444455555555555555544444444555555555555444

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.1e-09  Score=126.41  Aligned_cols=271  Identities=21%  Similarity=0.203  Sum_probs=154.6

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCC--CCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCccc
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTR--IKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRE  109 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~--l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~  109 (776)
                      ...+...+-++.+... +... .. +.|++|-+..|.  +....++.|..++.|++|||++| .-.+.+|..     +++
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~~-~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~-----I~~  593 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGSS-EN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSS-----IGE  593 (889)
T ss_pred             hheeEEEEeccchhhc-cCCC-CC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-CccCcCChH-----Hhh
Confidence            4556666666655443 2122 12 467788777775  43233344666888888888887 555677776     555


Q ss_pred             CCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCC--CCCCccccCCCCCCE
Q 047486          110 LDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ--GGVPSWLFTLPSLLS  187 (776)
Q Consensus       110 L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~  187 (776)
                      |.+||+|+++++.+. .+|..+++++.|.+|++..+.....+|.....+.+|++|.+......  ...-..+.++.+|+.
T Consensus       594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~  672 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN  672 (889)
T ss_pred             hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence            556888888888888 78888888888888888877665556777777888888888765422  222233455555665


Q ss_pred             EEccCCcCCCcCCCC---CCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCC------CCCCC
Q 047486          188 IDLSKNMLNGPIDLF---QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSK------LKKLQ  258 (776)
Q Consensus       188 L~l~~n~l~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~------l~~L~  258 (776)
                      +...........+..   ...+..+.+.+.++... ..+..+..+.+|+.|.+.++.+. .+.......      ++++.
T Consensus       673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~-e~~~~~~~~~~~~~~f~~l~  750 (889)
T KOG4658|consen  673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS-EIVIEWEESLIVLLCFPNLS  750 (889)
T ss_pred             heeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc-hhhcccccccchhhhHHHHH
Confidence            555433321001111   11112223333332222 34556677888999999888775 222122111      22233


Q ss_pred             EEeccCCCCCccccccccccccCCCCccEEeccCCCCCC-cchhhhCCcccceEecccCccc
Q 047486          259 FLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE-FPGFLRNSEELYLLDLSNNRIQ  319 (776)
Q Consensus       259 ~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~~~~L~~L~L~~n~l~  319 (776)
                      .+.+.++..   +...  ....-.++|+.|++..|...+ +.+....+..+..+-+..+.+.
T Consensus       751 ~~~~~~~~~---~r~l--~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  751 KVSILNCHM---LRDL--TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHhhcccc---cccc--chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            333333321   1111  111246899999999997653 3345555555655555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.2e-09  Score=81.13  Aligned_cols=61  Identities=43%  Similarity=0.562  Sum_probs=57.5

Q ss_pred             CCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcc
Q 047486          608 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL  668 (776)
Q Consensus       608 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  668 (776)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|.+|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988788999999999999999999988888999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=5.7e-10  Score=120.86  Aligned_cols=193  Identities=28%  Similarity=0.272  Sum_probs=79.1

Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCEEEc
Q 047486          112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP-SWLFTLPSLLSIDL  190 (776)
Q Consensus       112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l  190 (776)
                      +|++|++++|.|+...  .+..++.|+.|++++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++
T Consensus       119 ~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l  193 (414)
T KOG0531|consen  119 NLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL  193 (414)
T ss_pred             cchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence            3444444444444321  233344444555555544421  223334445555555554442222 1 234444555555


Q ss_pred             cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCC--CCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN--LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      .+|.+......... ..+..+++..|.++..-  .+..+..  |+.+++++|.+. .++ ..+..+..+..+++..|.+.
T Consensus       194 ~~n~i~~i~~~~~~-~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~-~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  194 GGNSIREIEGLDLL-KKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSP-EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cCCchhcccchHHH-HHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-ccc-ccccccccccccchhhcccc
Confidence            55544322211111 22233344444443111  1111222  455555555544 221 23444555555555555543


Q ss_pred             ccccccccccccCCCCccEEeccCCCCCC---c-ch-hhhCCcccceEecccCcccc
Q 047486          269 SFTSSANISIKYSLPSLKVLRFAYCNITE---F-PG-FLRNSEELYLLDLSNNRIQG  320 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l-p~-~l~~~~~L~~L~L~~n~l~~  320 (776)
                      .....      ...+.+..+....+.+..   . .. .....+.++...+..|.+..
T Consensus       269 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  269 NLEGL------ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccc------cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            33221      133344444444444321   1 11 13345566666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=6.5e-10  Score=120.37  Aligned_cols=225  Identities=27%  Similarity=0.278  Sum_probs=106.1

Q ss_pred             ccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCC
Q 047486          393 ICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL  472 (776)
Q Consensus       393 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  472 (776)
                      +..+++|+.|++.+|.+. .+...+..+. +|++|++++|.|+.+.  .+..++.|+.|++++|.|+..  ..+..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~-~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLV-NLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhh-cchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhh
Confidence            444555555555555554 3322222232 4555555555555432  233444455666666655533  223335555


Q ss_pred             cEEEcCCCccCcccc-hhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhcc
Q 047486          473 EVVNVGKNMISDSFP-CWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD  551 (776)
Q Consensus       473 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~  551 (776)
                      +.+++++|.+....+ . ...+.+++.+++.+|.+......    ..+..+..+++..|.++..-+...           
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~----~~~~~l~~~~l~~n~i~~~~~l~~-----------  228 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL----DLLKKLVLLSLLDNKISKLEGLNE-----------  228 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----HHHHHHHHhhcccccceeccCccc-----------
Confidence            566666665554433 2 34455555555555554321111    112223333444444431111000           


Q ss_pred             ccCceecccCccccceEEEEeccchhhHHHhhc--ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccc
Q 047486          552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILV--MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE  629 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  629 (776)
                                                     +.  .|+.+++++|++.. ++..+..+..+..|+++.|++...  ..+.
T Consensus       229 -------------------------------~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~  274 (414)
T KOG0531|consen  229 -------------------------------LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLE  274 (414)
T ss_pred             -------------------------------chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--cccc
Confidence                                           01  24556666666652 224455566666666666666543  2234


Q ss_pred             ccCCCcEEeccCccCcCC---Cchh-hccccccccccCccCcceecCC
Q 047486          630 NMTALESLDLSFNKLDGR---IPEQ-LLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                      ....+..+..+.|.+...   .... ......+..+.+.+|+.....+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            445556666666665421   1111 3344556666666666654433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.7e-09  Score=103.33  Aligned_cols=176  Identities=20%  Similarity=0.188  Sum_probs=112.1

Q ss_pred             CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCC-CCcc-CCCCCCCCCCC
Q 047486            6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTR-IKGN-FPDDIFRLPNL   83 (776)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~-l~~~-~~~~l~~l~~L   83 (776)
                      +|++||||+..|+.  .++-..++.|.+|+.|.|.++++.+.+...+++- .+|+.|+|+.+. ++.. ..--+.+|+.|
T Consensus       186 Rlq~lDLS~s~it~--stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV--STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeH--HHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhH
Confidence            57888888887762  4555677888888888888888888888888887 888889888764 3321 11234678888


Q ss_pred             CEEeccCCCCccccC-CCCCCC--CCcccCCCCcEEEccCCccc---ccccccccCCCCCCEEEccCCc-ccCCCchhhc
Q 047486           84 QILFLNLNSQLTGYL-PKSNWS--SPLRELDLLSVLDIGFCNFT---GSIPTSIGNLTRATEIAFASNH-FTGQLPHHVS  156 (776)
Q Consensus        84 ~~L~Ls~n~~~~~~~-p~~~~~--~~l~~L~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~  156 (776)
                      +.|++++| ...... ...+..  ..      |+.|+++++.-.   ..+..-...|++|..|||++|. ++......|.
T Consensus       263 ~~LNlsWc-~l~~~~Vtv~V~hise~------l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~  335 (419)
T KOG2120|consen  263 DELNLSWC-FLFTEKVTVAVAHISET------LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  335 (419)
T ss_pred             hhcCchHh-hccchhhhHHHhhhchh------hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence            88888888 443222 112222  33      777788776421   1222223467777788877754 3333344566


Q ss_pred             CCCCCCEEEccCCcCCCCCCcc---ccCCCCCCEEEccCC
Q 047486          157 GLSYLTTFDLSGNYFQGGVPSW---LFTLPSLLSIDLSKN  193 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n  193 (776)
                      +++.|++|.++.|..  .+|..   +...+.|.+|++.++
T Consensus       336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            777777777777763  44543   334556666665544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=3.6e-09  Score=112.77  Aligned_cols=125  Identities=26%  Similarity=0.299  Sum_probs=61.5

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCc-cccCCCCCCEEEcc
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS-WLFTLPSLLSIDLS  191 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~  191 (776)
                      |.+.++++|.++ .+..++.-++.|+.|+|++|+++..  ..+..|++|++|||++|.+. .+|. ....+. |+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence            555555666555 3444555555666666666665532  24555556666666666555 2221 122222 4444444


Q ss_pred             CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486          192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL  267 (776)
Q Consensus       192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i  267 (776)
                      +|.++..                         ..+.++.+|+.||+++|-+.+.-....++.+..|+.|.|.+|++
T Consensus       241 nN~l~tL-------------------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL-------------------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh-------------------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            4444322                         23445555555555555544332223344445555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=1.8e-08  Score=107.56  Aligned_cols=179  Identities=27%  Similarity=0.286  Sum_probs=110.4

Q ss_pred             chhhcCCCCCCEEEccCCcCCCCCCccccCC-CCCCEEEccCCcCC----------C-cCCCCCCCCCCcEEEccCCcCC
Q 047486          152 PHHVSGLSYLTTFDLSGNYFQGGVPSWLFTL-PSLLSIDLSKNMLN----------G-PIDLFQLPNSLQDVRLEENEIR  219 (776)
Q Consensus       152 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~----------~-~~~~~~~~~~L~~L~L~~n~i~  219 (776)
                      |-.+..+..|++|.+.++.+..  ...+..+ ..|++|--. |.+.          | ....+.. ..|.+.+.++|.+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~W-n~L~~a~fsyN~L~  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVW-NKLATASFSYNRLV  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhh-hhHhhhhcchhhHH
Confidence            5567788899999999988762  1111111 123332211 1111          0 1111122 45666777777776


Q ss_pred             CCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc
Q 047486          220 GTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP  299 (776)
Q Consensus       220 ~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp  299 (776)
                       .+..++.-++.|+.|+|++|+++ .+  ..+..|++|++|||++|.++.++...    ...+ .|+.|.+++|.++++-
T Consensus       178 -~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~----~~gc-~L~~L~lrnN~l~tL~  248 (1096)
T KOG1859|consen  178 -LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLS----MVGC-KLQLLNLRNNALTTLR  248 (1096)
T ss_pred             -hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccc----hhhh-hheeeeecccHHHhhh
Confidence             55566666778888888888876 33  46777888888888888776665432    1122 3778888888777664


Q ss_pred             hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccc
Q 047486          300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT  344 (776)
Q Consensus       300 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  344 (776)
                      + +.++.+|+.||+++|-+.+.-.-...+.+..|+.|.|.+|.+-
T Consensus       249 g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  249 G-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            3 5677788888888887765443344456677778888877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=4.3e-08  Score=93.96  Aligned_cols=182  Identities=20%  Similarity=0.222  Sum_probs=97.8

Q ss_pred             CCccEEECCCCcCCc-cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcccc-hhhcCCCCcCE
Q 047486          422 TELITLHLKNNSLEG-HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSFP-CWLGSLHELKI  498 (776)
Q Consensus       422 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~  498 (776)
                      +.|+++||++..|+. .....+..|.+|+.|.|.++++.+.+...++...+|+.|+|+.+ .++.... -.+.+|+.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            457777777776652 22344566777888888888877777777777778888887764 3332111 23456777777


Q ss_pred             EEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhh
Q 047486          499 LVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQ  578 (776)
Q Consensus       499 L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (776)
                      |+++.|.+...........--+.|..|+++++.=.       +.                              +.+.-.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-------l~------------------------------~sh~~t  307 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-------LQ------------------------------KSHLST  307 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-------hh------------------------------hhHHHH
Confidence            77776665543322221112233444444433211       00                              000111


Q ss_pred             HHHhhcceeEEecCCCc-ccccchhhhccCCCCCEEeCCCCcCcccCCccc---cccCCCcEEeccCc
Q 047486          579 LQKILVMFRAMDFSRNR-FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF---ENMTALESLDLSFN  642 (776)
Q Consensus       579 ~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N  642 (776)
                      ..+.++++..||||.|. ++.....+|..++.|++|.++.|..  ++|..+   ...++|.+||+-++
T Consensus       308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            22336666777776554 3333344555666666666666643  445433   33455555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=9.4e-08  Score=91.64  Aligned_cols=188  Identities=18%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             CCCcEEEccCCcccc--cccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCE
Q 047486          111 DLLSVLDIGFCNFTG--SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLS  187 (776)
Q Consensus       111 ~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~  187 (776)
                      +.++.+||.+|.|+.  .+..-+.+++.|++|+++.|.+...+...-..+.+|++|-|.+..+.- .....+..+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            347778888887774  233445678888888888888774332211456778888888877652 23344566777788


Q ss_pred             EEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCc-cccCCCCCCCEEeccCCC
Q 047486          188 IDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNS  266 (776)
Q Consensus       188 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~  266 (776)
                      |.++.|.+.             .+.+..+.+...-       +.+++|.+-.|........ ..-.-++++..+.+..|+
T Consensus       151 lHmS~N~~r-------------q~n~Dd~c~e~~s-------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  151 LHMSDNSLR-------------QLNLDDNCIEDWS-------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             hhhccchhh-------------hhccccccccccc-------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            877776432             2222332222110       1222222222211100000 001223455555666665


Q ss_pred             CCccccccccccccCCCCccEEeccCCCCCCcc--hhhhCCcccceEecccCccccc
Q 047486          267 LLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQGR  321 (776)
Q Consensus       267 i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~l~~~~~L~~L~L~~n~l~~~  321 (776)
                      +.+....   ..+..+|.+.-|+++.++|..+.  +.+..++.|..|.++++.+.+.
T Consensus       211 lK~~s~e---k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  211 LKTESSE---KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             ccchhhc---ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            5444332   22334556666666666666554  4566777777777777776543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=1.8e-07  Score=79.24  Aligned_cols=112  Identities=26%  Similarity=0.402  Sum_probs=83.3

Q ss_pred             cceeEEecCCCcccccchhhhcc-CCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccccccccc
Q 047486          584 VMFRAMDFSRNRFHGEIPEVLGN-FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  662 (776)
Q Consensus       584 ~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  662 (776)
                      ..|+.++|++|.+.. .|+.|.. .+.+++|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus        53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            456788899999884 4555544 458899999999998 78888999999999999999998 6677777789999999


Q ss_pred             CccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047486          663 LSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSND  704 (776)
Q Consensus       663 ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~  704 (776)
                      ..+|.+. +||.+....+..+.     ..+..+||...|...
T Consensus       130 s~~na~~-eid~dl~~s~~~al-----~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPAL-----IKLGNEPLGDETKKK  165 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHH-----HHhcCCcccccCccc
Confidence            8888775 67765333233332     334446777778763

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.08  E-value=7.7e-07  Score=75.52  Aligned_cols=83  Identities=28%  Similarity=0.449  Sum_probs=52.8

Q ss_pred             eeEEecCCCcccccchhh---hccCCCCCEEeCCCCcCcccCCccc-cccCCCcEEeccCccCcCCCchhhccccccccc
Q 047486          586 FRAMDFSRNRFHGEIPEV---LGNFKSLKVLNLSHNSLTGNIPVSF-ENMTALESLDLSFNKLDGRIPEQLLSVTALALL  661 (776)
Q Consensus       586 L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  661 (776)
                      +-.+|||++.+. .++..   +.....|+..+|++|.+. ..|..| ...+.++.|+|++|+|+ .+|+.++.++.|+.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            345666666665 23333   334455666677777777 344444 33457777777777777 566677777777777


Q ss_pred             cCccCcceec
Q 047486          662 NLSYNRLWGR  671 (776)
Q Consensus       662 ~ls~N~l~g~  671 (776)
                      |++.|++...
T Consensus       106 Nl~~N~l~~~  115 (177)
T KOG4579|consen  106 NLRFNPLNAE  115 (177)
T ss_pred             ccccCccccc
Confidence            7777777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.06  E-value=3.2e-07  Score=86.88  Aligned_cols=113  Identities=20%  Similarity=0.145  Sum_probs=58.7

Q ss_pred             CCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCc--c----hhhhCCcccceEecccCccccccCC--
Q 047486          253 KLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF--P----GFLRNSEELYLLDLSNNRIQGRISK--  324 (776)
Q Consensus       253 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--p----~~l~~~~~L~~L~L~~n~l~~~~~~--  324 (776)
                      .-|.|+.++...|++...+.......+..-..|+.+.+.+|.|..-  .    -.+..+.+|+.||+.+|.++-....  
T Consensus       155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            3456666666666654443332212222234667777777766411  1    1244567777777777776522111  


Q ss_pred             -CcccCCccCCeEeCcCcccccccc---------ccccccCEEeccCcccC
Q 047486          325 -SDSPGWKSLIDLDLSNNFMTHIEL---------HPWMNITTLDLRNNRIQ  365 (776)
Q Consensus       325 -~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~  365 (776)
                       .....++.|+.|.+.+|-++.-..         ..+++|..|...+|...
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence             112344556777777666554432         12355555555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=5.8e-07  Score=85.20  Aligned_cols=41  Identities=22%  Similarity=0.142  Sum_probs=21.1

Q ss_pred             CCCCCEEECCCCcCccccCc------cccCCCCCCCEEeccCCCCCc
Q 047486          229 LVNLTILDLSSNNLSGAIRF------DQFSKLKKLQFLDLSNNSLLS  269 (776)
Q Consensus       229 l~~L~~L~Ls~n~l~~~i~~------~~~~~l~~L~~L~Ls~n~i~~  269 (776)
                      .++|..|-..+|...+.+-.      ..-..+|-|..|.+.+|.+..
T Consensus       271 ~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         271 VPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             CCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            45555555555544332211      112345666677777777543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=1.7e-06  Score=83.15  Aligned_cols=85  Identities=20%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             CCCCCEEEccCCcccCCC-chhh-cCCCCCCEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCCCcCCCCC-CCCCC
Q 047486          134 LTRATEIAFASNHFTGQL-PHHV-SGLSYLTTFDLSGNYFQG--GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQ-LPNSL  208 (776)
Q Consensus       134 l~~L~~L~L~~n~l~~~~-p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L  208 (776)
                      ...+..|.+.++.+.... ...| ..++.++.+||.+|.++.  .+...+.++|.|+.|+++.|++...+.... ...+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            334445555555544221 1122 245677888888887763  334445677778888888777765444331 11445


Q ss_pred             cEEEccCCcC
Q 047486          209 QDVRLEENEI  218 (776)
Q Consensus       209 ~~L~L~~n~i  218 (776)
                      ++|.|.+..+
T Consensus       124 ~~lVLNgT~L  133 (418)
T KOG2982|consen  124 RVLVLNGTGL  133 (418)
T ss_pred             EEEEEcCCCC
Confidence            5555544433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=8e-06  Score=56.17  Aligned_cols=36  Identities=39%  Similarity=0.663  Sum_probs=19.4

Q ss_pred             CCCEEeCCCCcCcccCCccccccCCCcEEeccCccCc
Q 047486          609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD  645 (776)
Q Consensus       609 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  645 (776)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665 34444556666666666666555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2.9e-05  Score=70.96  Aligned_cols=15  Identities=33%  Similarity=0.441  Sum_probs=5.8

Q ss_pred             CCCCCEEECCCCcCc
Q 047486          229 LVNLTILDLSSNNLS  243 (776)
Q Consensus       229 l~~L~~L~Ls~n~l~  243 (776)
                      ++.|.+|.+.+|+|+
T Consensus        63 l~rL~tLll~nNrIt   77 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRIT   77 (233)
T ss_pred             ccccceEEecCCcce
Confidence            333333333333333

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=7e-05  Score=77.94  Aligned_cols=157  Identities=20%  Similarity=0.267  Sum_probs=98.6

Q ss_pred             hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486           28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL  107 (776)
Q Consensus        28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l  107 (776)
                      +..+.+++.|++++|.+... |    .+|++|++|.+++|.--..+|+.+  .++|++|++++|..+ ..+|..      
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-~sLP~s------  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-SGLPES------  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-cccccc------
Confidence            45578999999999977765 5    356789999998864434566544  258999999988333 345544      


Q ss_pred             ccCCCCcEEEccCCccc--ccccccccCCCCCCEEEccCCccc--CCCchhhcCC-CCCCEEEccCCcCCCCCCccccCC
Q 047486          108 RELDLLSVLDIGFCNFT--GSIPTSIGNLTRATEIAFASNHFT--GQLPHHVSGL-SYLTTFDLSGNYFQGGVPSWLFTL  182 (776)
Q Consensus       108 ~~L~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l  182 (776)
                           |+.|+++.+...  +.+|.      +|+.|.+.+++..  ...|.   .+ ++|++|++++|... ..|..+.  
T Consensus       114 -----Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--  176 (426)
T PRK15386        114 -----VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--  176 (426)
T ss_pred             -----cceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--
Confidence                 888888766543  13343      4566766443211  11111   12 57999999988865 4454333  


Q ss_pred             CCCCEEEccCCcCCC-cCCCCCCCCCCcEEEccCC
Q 047486          183 PSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEEN  216 (776)
Q Consensus       183 ~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n  216 (776)
                      .+|+.|+++.+.... .+.....++++ .|++.++
T Consensus       177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS  210 (426)
T ss_pred             ccCcEEEecccccccccCccccccccc-Eechhhh
Confidence            589999998764332 22222344566 7777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.77  E-value=1.1e-06  Score=88.58  Aligned_cols=229  Identities=18%  Similarity=0.088  Sum_probs=112.5

Q ss_pred             CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCcc-CCCCChhhHhhccCCccEEEcCCC-CCCccCCC-CCCCCCC
Q 047486            6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATN-MSLIKPFSLLNLSSTMTDLDLGGT-RIKGNFPD-DIFRLPN   82 (776)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~~L~~L~Ls~~-~l~~~~~~-~l~~l~~   82 (776)
                      .|+.|.+.++.-. ....+-....+++++++|++.+|. ++......+++..+.|++|+|..| .++...-. -...+++
T Consensus       139 ~lk~LSlrG~r~v-~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCRAV-GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             ccccccccccccC-CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            5677777776421 113344455678888888887775 344444555554477888888774 34432222 1234778


Q ss_pred             CCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccc----cCCCCCCEEEccCCc-ccCCCc-hhhc
Q 047486           83 LQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSI----GNLTRATEIAFASNH-FTGQLP-HHVS  156 (776)
Q Consensus        83 L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~p-~~~~  156 (776)
                      |++|++|++..+++.--..+    .++++.++.+.+.+|.-.+  -+.+    +.+..+..+++.++. ++...- ..=.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~----~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQAL----QRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             HHHhhhccCchhhcCcchHH----hccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            88888888855554211111    3344445555555543221  0111    233445555655553 222111 1113


Q ss_pred             CCCCCCEEEccCCcCCC-CCCccc-cCCCCCCEEEccCCcCCCcC---CCCCCCCCCcEEEccCCcCCC--CCCccccCC
Q 047486          157 GLSYLTTFDLSGNYFQG-GVPSWL-FTLPSLLSIDLSKNMLNGPI---DLFQLPNSLQDVRLEENEIRG--TIPNSTFQL  229 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l  229 (776)
                      ++..|++++.+++.-.+ ..-.++ .++.+|+.|.++.++--+..   .....++.|+.+++..+....  .+...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            45667777777654321 111222 34667777777766532111   111233555555555543321  111112235


Q ss_pred             CCCCEEECCCCc
Q 047486          230 VNLTILDLSSNN  241 (776)
Q Consensus       230 ~~L~~L~Ls~n~  241 (776)
                      +.|++|.++++.
T Consensus       372 ~~lr~lslshce  383 (483)
T KOG4341|consen  372 PRLRVLSLSHCE  383 (483)
T ss_pred             chhccCChhhhh
Confidence            555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=3.3e-05  Score=53.15  Aligned_cols=37  Identities=32%  Similarity=0.617  Sum_probs=32.0

Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcc
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG  622 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  622 (776)
                      +|++|++++|+|+ .+|+.+++|++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6799999999999 567789999999999999999984

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=1.6e-05  Score=90.11  Aligned_cols=109  Identities=21%  Similarity=0.264  Sum_probs=60.5

Q ss_pred             CCccEEEcCCCCCCc-cCCCCCC-CCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCC
Q 047486           57 STMTDLDLGGTRIKG-NFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNL  134 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~-~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l  134 (776)
                      .+|++|++++...-. .-|..++ .+|+|++|.+++- .+...   +|. .-+.++++|+.||+|+++++..  ..++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~---dF~-~lc~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDND---DFS-QLCASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecch---hHH-HHhhccCccceeecCCCCccCc--HHHhcc
Confidence            467777777654321 1223333 3677777777664 22211   011 1134555577777777777643  566777


Q ss_pred             CCCCEEEccCCcccC-CCchhhcCCCCCCEEEccCCcCC
Q 047486          135 TRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQ  172 (776)
Q Consensus       135 ~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~  172 (776)
                      ++|+.|.+.+=.+.. ..-..+.++++|++||+|.....
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            777777766655442 22234556777777777765543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.64  E-value=0.0002  Score=74.61  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=16.6

Q ss_pred             CCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC
Q 047486          446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN  480 (776)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  480 (776)
                      ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45666666666544 2232222  35666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00018  Score=65.84  Aligned_cols=62  Identities=27%  Similarity=0.356  Sum_probs=35.4

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486          206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL  267 (776)
Q Consensus       206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i  267 (776)
                      +.|.+|.+.+|+|+..-|.--.-+++|+.|.|.+|++...-....+..|++|++|.+-+|++
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence            55555555555555444433334556667777776665333334556666666666666664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.52  E-value=3e-06  Score=85.55  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=26.2

Q ss_pred             CCCcEEEccCCcCCCCCC--ccccCCCCCCEEECCCCcCccccCc-cccCCCCCCCEEeccCC
Q 047486          206 NSLQDVRLEENEIRGTIP--NSTFQLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNN  265 (776)
Q Consensus       206 ~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n  265 (776)
                      ..|+.|.+.++.-.+.-+  .....++++++|.+.++........ ..-..+++|++|++..|
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC  200 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc
Confidence            345666666554332211  1223456666666666542111110 11123455555555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.40  E-value=0.0005  Score=61.05  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=43.9

Q ss_pred             CCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccE
Q 047486          371 PPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS  450 (776)
Q Consensus       371 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  450 (776)
                      .+.+|+.+.+.. .+......+|.++++|+.+.+.++ +. .++...+....+++.+.+.+ .+.......|..+++|+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccc
Confidence            344455555543 333344445555555666666553 33 33333333333455665544 333344445555566666


Q ss_pred             EEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCc
Q 047486          451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHEL  496 (776)
Q Consensus       451 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  496 (776)
                      +++..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            665543 443444455555 555555544 3333444445555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.33  E-value=0.00049  Score=61.12  Aligned_cols=60  Identities=17%  Similarity=0.136  Sum_probs=22.2

Q ss_pred             cccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          130 SIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       130 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      .|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +......+|.++++|+.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344445555555443 233333444555555555555443 333333444444445555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.31  E-value=9.8e-05  Score=83.75  Aligned_cols=149  Identities=20%  Similarity=0.186  Sum_probs=102.1

Q ss_pred             CCCCEEeCCCCCCccccCChhHhh-cCCCCCCEEeCCCccCCCCC-hhhHhhccCCccEEEcCCCCCCccCCCCCCCCCC
Q 047486            5 SKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIK-PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPN   82 (776)
Q Consensus         5 ~~L~~L~Ls~~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~   82 (776)
                      .+|++||+++....  ...++..+ ..+|.|+.|.+++-.+.... -....++ ++|+.||+|+++++..  ..++++++
T Consensus       122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCCCccCc--HHHhcccc
Confidence            57999999987543  25666555 46999999999987775542 3344567 8999999999998733  56788999


Q ss_pred             CCEEeccCCCCccccCCCCCCC-CCcccCCCCcEEEccCCccccc------ccccccCCCCCCEEEccCCcccCCCchhh
Q 047486           83 LQILFLNLNSQLTGYLPKSNWS-SPLRELDLLSVLDIGFCNFTGS------IPTSIGNLTRATEIAFASNHFTGQLPHHV  155 (776)
Q Consensus        83 L~~L~Ls~n~~~~~~~p~~~~~-~~l~~L~~L~~L~Ls~n~l~~~------~~~~l~~l~~L~~L~L~~n~l~~~~p~~~  155 (776)
                      |++|.+.+= .+..     ... ..+-.|++|++||+|.......      .-+.-..|++|+.||.+++.+....-+.+
T Consensus       197 Lq~L~mrnL-e~e~-----~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  197 LQVLSMRNL-EFES-----YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             HHHHhccCC-CCCc-----hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            999988654 2221     111 2266778899999998765421      12233468999999999988876544433


Q ss_pred             -cCCCCCCEE
Q 047486          156 -SGLSYLTTF  164 (776)
Q Consensus       156 -~~l~~L~~L  164 (776)
                       ...++|+.+
T Consensus       271 l~sH~~L~~i  280 (699)
T KOG3665|consen  271 LNSHPNLQQI  280 (699)
T ss_pred             HHhCccHhhh
Confidence             233444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.68  E-value=0.00094  Score=64.11  Aligned_cols=62  Identities=27%  Similarity=0.419  Sum_probs=29.2

Q ss_pred             CCCcEEEccCC--cCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486          206 NSLQDVRLEEN--EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL  267 (776)
Q Consensus       206 ~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i  267 (776)
                      ++|++|.++.|  ++.+.++.-...+++|++|++++|++...-....+..+++|..|++.+|..
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            34444444444  333333333344466666666666554211112344445555666665553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.00019  Score=68.82  Aligned_cols=100  Identities=22%  Similarity=0.282  Sum_probs=61.5

Q ss_pred             CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccc-hhhcCCCCcCEEEc
Q 047486          423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP-CWLGSLHELKILVL  501 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L  501 (776)
                      +.+.|+..+|.++.+  .....++.|+.|.|+-|+|+..-  .+..|++|++|+|..|.|.+... ..+.++++|+.|+|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            456677777766643  33445677777777777777553  36677777777777777764322 23567777777877


Q ss_pred             cCCcccccCCCCC---CCcCCCCccEEe
Q 047486          502 RSNRFYGPLCNSN---ITFPFQALRIID  526 (776)
Q Consensus       502 ~~n~l~~~~~~~~---~~~~l~~L~~Ld  526 (776)
                      ..|+-.|.-+...   ...-+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777655433221   112356666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.25  E-value=0.003  Score=60.75  Aligned_cols=39  Identities=13%  Similarity=0.200  Sum_probs=16.5

Q ss_pred             CCCCcEEEccCC--cccccccccccCCCCCCEEEccCCccc
Q 047486          110 LDLLSVLDIGFC--NFTGSIPTSIGNLTRATEIAFASNHFT  148 (776)
Q Consensus       110 L~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~  148 (776)
                      |++|+.|+++.|  .+++.++.....+++|++++++.|++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            333444444444  333333333333444555555554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.00031  Score=67.46  Aligned_cols=84  Identities=26%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             CCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc--hhhhCCcc
Q 047486          230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEE  307 (776)
Q Consensus       230 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~~l~~~~~  307 (776)
                      .+.+.|+..++.+. .|  .....++.|+.|.||-|+|+++..      +..|.+|++|+|..|.|..+.  .++.++++
T Consensus        19 ~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            34455555555554 22  234556666666666666554432      225666666666666666554  35667777


Q ss_pred             cceEecccCcccccc
Q 047486          308 LYLLDLSNNRIQGRI  322 (776)
Q Consensus       308 L~~L~L~~n~l~~~~  322 (776)
                      |+.|.|..|.-.|..
T Consensus        90 Lr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEA  104 (388)
T ss_pred             hhhHhhccCCccccc
Confidence            777777777655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.72  E-value=0.0038  Score=35.54  Aligned_cols=18  Identities=56%  Similarity=0.700  Sum_probs=7.7

Q ss_pred             CcEEeccCccCcCCCchhh
Q 047486          634 LESLDLSFNKLDGRIPEQL  652 (776)
Q Consensus       634 L~~L~Ls~N~l~~~~p~~l  652 (776)
                      |++|||++|+++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.54  E-value=0.0011  Score=73.97  Aligned_cols=61  Identities=18%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             CCCcEEEccCCc-ccccccccccC-CCCCCEEEccCCc-ccCCCchh-hcCCCCCCEEEccCCcC
Q 047486          111 DLLSVLDIGFCN-FTGSIPTSIGN-LTRATEIAFASNH-FTGQLPHH-VSGLSYLTTFDLSGNYF  171 (776)
Q Consensus       111 ~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~n~l  171 (776)
                      .+|+.|+++++. +++..-..+.. |++|++|.+.++. ++...-.. ...++.|++|+++++..
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            335555555555 33322222322 5556666555544 33221111 23455566666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.49  E-value=0.0012  Score=73.82  Aligned_cols=134  Identities=16%  Similarity=0.045  Sum_probs=68.4

Q ss_pred             hcCCCCCCEEeCCCccCCCC--ChhhHhhccCCccEEEcCCC-CCCccC----CCCCCCCCCCCEEeccCCCCccccCCC
Q 047486           28 ASNLTKLSLLHLGATNMSLI--KPFSLLNLSSTMTDLDLGGT-RIKGNF----PDDIFRLPNLQILFLNLNSQLTGYLPK  100 (776)
Q Consensus        28 l~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~~L~~L~Ls~~-~l~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~~p~  100 (776)
                      ...++.|+.|.+.++.-...  ........ ++|++|+++++ ......    ......+++|+.|+++++..+++..-.
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            34467777777777643332  12233344 77777777763 111111    122344677778887777223322211


Q ss_pred             CCCCCCcccCCCCcEEEccCCc-ccccccc-cccCCCCCCEEEccCCcccCC--CchhhcCCCCCCEEEc
Q 047486          101 SNWSSPLRELDLLSVLDIGFCN-FTGSIPT-SIGNLTRATEIAFASNHFTGQ--LPHHVSGLSYLTTFDL  166 (776)
Q Consensus       101 ~~~~~~l~~L~~L~~L~Ls~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L  166 (776)
                      .+.    ..++.|++|.+.+|. +++..-. ....++.|++|+++.+.....  +.....++++|+.+.+
T Consensus       263 ~l~----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  263 ALA----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             HHH----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            111    114457777776666 4432222 234577788888877654311  2222344555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.45  E-value=0.0054  Score=34.91  Aligned_cols=20  Identities=60%  Similarity=0.850  Sum_probs=11.0

Q ss_pred             CCEEeCCCCcCcccCCccccc
Q 047486          610 LKVLNLSHNSLTGNIPVSFEN  630 (776)
Q Consensus       610 L~~L~Ls~N~l~~~~p~~~~~  630 (776)
                      |+.|||++|+++ .+|.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            555666666665 45544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.26  E-value=0.00065  Score=73.79  Aligned_cols=85  Identities=22%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             CCEEeCCCCCCccc-cCChhHhhcCCCCCCEEeCCCccCCCCChhhHhh---cc-CCccEEEcCCCCCCcc----CCCCC
Q 047486            7 LTHLDLSFCVLTIE-QRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLN---LS-STMTDLDLGGTRIKGN----FPDDI   77 (776)
Q Consensus         7 L~~L~Ls~~~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~---l~-~~L~~L~Ls~~~l~~~----~~~~l   77 (776)
                      +.+|+|.+|.+... ...+-..+....+|..|++++|.+.+.....+.+   .+ ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56667777766411 1123345566677777777777776543322221   11 3456666666666543    33445


Q ss_pred             CCCCCCCEEeccCC
Q 047486           78 FRLPNLQILFLNLN   91 (776)
Q Consensus        78 ~~l~~L~~L~Ls~n   91 (776)
                      .....++.++++.|
T Consensus       169 ~~~~~l~~l~l~~n  182 (478)
T KOG4308|consen  169 EKNEHLTELDLSLN  182 (478)
T ss_pred             hcccchhHHHHHhc
Confidence            55667777777766

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.10  E-value=0.1  Score=27.41  Aligned_cols=15  Identities=20%  Similarity=0.423  Sum_probs=5.4

Q ss_pred             CccEEeccCCCCCCc
Q 047486          284 SLKVLRFAYCNITEF  298 (776)
Q Consensus       284 ~L~~L~l~~n~l~~l  298 (776)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.21  E-value=0.00091  Score=72.69  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=37.6

Q ss_pred             CcEEEccCCcccccc----cccccCCCCCCEEEccCCcccCCCchhh----cCC-CCCCEEEccCCcCCCC----CCccc
Q 047486          113 LSVLDIGFCNFTGSI----PTSIGNLTRATEIAFASNHFTGQLPHHV----SGL-SYLTTFDLSGNYFQGG----VPSWL  179 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~L~~n~l~~~----~~~~l  179 (776)
                      +.+|.|.+|.+....    ...+.....|..|++++|.+.+..-..+    ... ..+++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            445555555554322    2233445555555555555542211111    111 3344555555555432    23334


Q ss_pred             cCCCCCCEEEccCCcC
Q 047486          180 FTLPSLLSIDLSKNML  195 (776)
Q Consensus       180 ~~l~~L~~L~l~~n~l  195 (776)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            4455555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.54  E-value=0.22  Score=29.56  Aligned_cols=16  Identities=44%  Similarity=0.505  Sum_probs=9.0

Q ss_pred             CCCcEEeccCccCcCC
Q 047486          632 TALESLDLSFNKLDGR  647 (776)
Q Consensus       632 ~~L~~L~Ls~N~l~~~  647 (776)
                      ++|+.|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.54  E-value=0.22  Score=29.56  Aligned_cols=16  Identities=44%  Similarity=0.505  Sum_probs=9.0

Q ss_pred             CCCcEEeccCccCcCC
Q 047486          632 TALESLDLSFNKLDGR  647 (776)
Q Consensus       632 ~~L~~L~Ls~N~l~~~  647 (776)
                      ++|+.|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4556666666666533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.85  E-value=0.33  Score=28.77  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=15.5

Q ss_pred             CCCCCEEeCCCCcCcccCCccc
Q 047486          607 FKSLKVLNLSHNSLTGNIPVSF  628 (776)
Q Consensus       607 l~~L~~L~Ls~N~l~~~~p~~~  628 (776)
                      +++|+.|+|++|+++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888888888885444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.85  E-value=0.33  Score=28.77  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=15.5

Q ss_pred             CCCCCEEeCCCCcCcccCCccc
Q 047486          607 FKSLKVLNLSHNSLTGNIPVSF  628 (776)
Q Consensus       607 l~~L~~L~Ls~N~l~~~~p~~~  628 (776)
                      +++|+.|+|++|+++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4678888888888885444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.60  E-value=0.038  Score=51.14  Aligned_cols=83  Identities=13%  Similarity=0.088  Sum_probs=43.1

Q ss_pred             CccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCC-cccccccccccCCCC
Q 047486           58 TMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC-NFTGSIPTSIGNLTR  136 (776)
Q Consensus        58 ~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n-~l~~~~~~~l~~l~~  136 (776)
                      .++.+|-+++.|...--+.+.+++.++.|.+.+|..+.+---+.+..    -.++|+.|++++| +|+...-..+..+++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhhh
Confidence            45666666666655555556666666666666664333211111111    1122666666655 355444445555666


Q ss_pred             CCEEEccC
Q 047486          137 ATEIAFAS  144 (776)
Q Consensus       137 L~~L~L~~  144 (776)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            66665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.36  E-value=0.017  Score=54.32  Aligned_cols=79  Identities=16%  Similarity=0.163  Sum_probs=37.2

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK  192 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  192 (776)
                      .++||++.|++. .....|+.++.|..|+++.|.+. -.|..++....++.+++..|..+ ..|.+++..++++++++.+
T Consensus        44 ~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            444444444443 22333444444445555544444 34444555555555555554444 4444455555555555544


Q ss_pred             Cc
Q 047486          193 NM  194 (776)
Q Consensus       193 n~  194 (776)
                      +.
T Consensus       121 ~~  122 (326)
T KOG0473|consen  121 TE  122 (326)
T ss_pred             Cc
Confidence            43

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.24  E-value=0.026  Score=53.21  Aligned_cols=81  Identities=15%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  664 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  664 (776)
                      ..+.||++.|++.. .-..|+-++.|..||++.|.+. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-
T Consensus        43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            44566777766652 2234555666666777777666 56666666666666776666666 556666667777777766


Q ss_pred             cCcc
Q 047486          665 YNRL  668 (776)
Q Consensus       665 ~N~l  668 (776)
                      +|++
T Consensus       120 ~~~~  123 (326)
T KOG0473|consen  120 KTEF  123 (326)
T ss_pred             cCcc
Confidence            6664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.58  E-value=0.073  Score=49.34  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCc-ccCCchhhhcCCCccEEECCCC-cCCccCcccccCCCCccEE
Q 047486          374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS-GTIPPCLGNFSTELITLHLKNN-SLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  451 (776)
                      .++.++-+++.|..+.-+.+.++++++.|.+.+|.-- +.--+.+.+..++|+.|++++| +|+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3566777777776666666777777777777766421 1111122223335555555544 2443333333444444444


Q ss_pred             EcC
Q 047486          452 DLN  454 (776)
Q Consensus       452 ~L~  454 (776)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.57  E-value=0.15  Score=29.57  Aligned_cols=13  Identities=46%  Similarity=0.744  Sum_probs=4.4

Q ss_pred             CCCEEeCCCCcCc
Q 047486          609 SLKVLNLSHNSLT  621 (776)
Q Consensus       609 ~L~~L~Ls~N~l~  621 (776)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3344444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.96  E-value=0.16  Score=29.47  Aligned_cols=21  Identities=33%  Similarity=0.365  Sum_probs=11.8

Q ss_pred             cCCCcEEeccCccCcCCCchh
Q 047486          631 MTALESLDLSFNKLDGRIPEQ  651 (776)
Q Consensus       631 l~~L~~L~Ls~N~l~~~~p~~  651 (776)
                      +++|++|+|++|+++.....+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHH
Confidence            356778888888776544433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	776
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-37
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-17
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-37
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-14

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 175/613 (28%), Positives = 247/613 (40%), Gaps = 103/613 (16%)
Query: 133 NLTRATEIAF---ASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
           +++R   + F   +SN+F+  +P  +   S L   D+SGN   G     + T   L  ++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN-LTILDLSSNNLSGAIRF 248
           +S N   GPI    L  SLQ + L EN+  G IP+      + LT LDLS N+  GA+  
Sbjct: 254 ISSNQFVGPIPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 311
Query: 249 DQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEEL 308
                                     N S +  + +L  +R                  L
Sbjct: 312 ---------PFFGSCSLLESLALSSNNFSGELPMDTLLKMR-----------------GL 345
Query: 309 YLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI 368
            +LDLS N   G + +S       L +L  S              + TLDL +N   G I
Sbjct: 346 KVLDLSFNEFSGELPES-------LTNLSAS--------------LLTLDLSSNNFSGPI 384
Query: 369 LV-----PPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTE 423
           L      P  + + L + NN  +GKIPP                   GTIP  LG+ S +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-K 443
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
           L  L L  N LEG I         L +L L+ N L G +P  L+ C  L  +++  N ++
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF---QALRIIDLSHNEFTGFLPRRI 540
              P W+G L  L IL L +N F G     NI       ++L  +DL+ N F G +P  +
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 541 FP-SMEAMKNVDEQGRLEY-----MGGAFYDESITVAMQG-HDFQLQKI----------- 582
           F  S +   N     R  Y     M    +     +  QG    QL ++           
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 583 --------------LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
                          +MF  +D S N   G IP+ +G+   L +LNL HN ++G+IP   
Sbjct: 619 VYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 629 ENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIG 688
            ++  L  LDLS NKLDGRIP+               N L G IP   QF TF    ++ 
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 689 NIHLCGEPLTVRC 701
           N  LCG PL  RC
Sbjct: 737 NPGLCGYPLP-RC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 176/432 (40%), Gaps = 57/432 (13%)
Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID-LDLSNN---FMTHIELHPWMN-I 354
           GF + S  L  LDLS N + G ++   S G  S +  L++S+N   F   +     +N +
Sbjct: 95  GF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153
Query: 355 TTLDLRNNRIQGSILVP------PPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXX 408
             LDL  N I G+ +V           K L +S NK+SG +                   
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSN 210
Query: 409 XXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
              T  P LG+ S  L  L +  N L G      +  + L+ L+++SN+  GP+P    K
Sbjct: 211 NFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269
Query: 469 CIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLRSNRFYGPL----------------- 510
              L+ +++ +N  +   P +L G+   L  L L  N FYG +                 
Sbjct: 270 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 511 ------CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAF 563
                    +     + L+++DLS NEF+G LP       E++ N+      L+     F
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-------ESLTNLSASLLTLDLSSNNF 380
Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 623
               +    Q     LQ++ +         N F G+IP  L N   L  L+LS N L+G 
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQ-------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 624 IPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFEN 683
           IP S  +++ L  L L  N L+G IP++             +N L G IP G    T  N
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 684 DSYIGNIHLCGE 695
              + N  L GE
Sbjct: 494 WISLSNNRLTGE 505

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 175/613 (28%), Positives = 247/613 (40%), Gaps = 103/613 (16%)
Query: 133 NLTRATEIAF---ASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
           +++R   + F   +SN+F+  +P  +   S L   D+SGN   G     + T   L  ++
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 190 LSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN-LTILDLSSNNLSGAIRF 248
           +S N   GPI    L  SLQ + L EN+  G IP+      + LT LDLS N+  GA+  
Sbjct: 251 ISSNQFVGPIPPLPL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP- 308
Query: 249 DQFSKLKKXXXXXXXXXXXXXXXXXANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEEL 308
                                     N S +  + +L  +R                  L
Sbjct: 309 ---------PFFGSCSLLESLALSSNNFSGELPMDTLLKMR-----------------GL 342
Query: 309 YLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI 368
            +LDLS N   G + +S       L +L  S              + TLDL +N   G I
Sbjct: 343 KVLDLSFNEFSGELPES-------LTNLSAS--------------LLTLDLSSNNFSGPI 381
Query: 369 LV-----PPPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXXXXGTIPPCLGNFSTE 423
           L      P  + + L + NN  +GKIPP                   GTIP  LG+ S +
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-K 440
Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
           L  L L  N LEG I         L +L L+ N L G +P  L+ C  L  +++  N ++
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF---QALRIIDLSHNEFTGFLPRRI 540
              P W+G L  L IL L +N F G     NI       ++L  +DL+ N F G +P  +
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 541 FP-SMEAMKNVDEQGRLEY-----MGGAFYDESITVAMQG-HDFQLQKI----------- 582
           F  S +   N     R  Y     M    +     +  QG    QL ++           
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 583 --------------LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
                          +MF  +D S N   G IP+ +G+   L +LNL HN ++G+IP   
Sbjct: 616 VYGGHTSPTFDNNGSMMF--LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 629 ENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYIG 688
            ++  L  LDLS NKLDGRIP+               N L G IP   QF TF    ++ 
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 689 NIHLCGEPLTVRC 701
           N  LCG PL  RC
Sbjct: 734 NPGLCGYPLP-RC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 176/432 (40%), Gaps = 57/432 (13%)
Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID-LDLSNN---FMTHIELHPWMN-I 354
           GF + S  L  LDLS N + G ++   S G  S +  L++S+N   F   +     +N +
Sbjct: 92  GF-KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 150
Query: 355 TTLDLRNNRIQGSILVP------PPSTKVLLVSNNKLSGKIPPXXXXXXXXXXXXXXXXX 408
             LDL  N I G+ +V           K L +S NK+SG +                   
Sbjct: 151 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSN 207
Query: 409 XXGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
              T  P LG+ S  L  L +  N L G      +  + L+ L+++SN+  GP+P    K
Sbjct: 208 NFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 266
Query: 469 CIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLRSNRFYGPL----------------- 510
              L+ +++ +N  +   P +L G+   L  L L  N FYG +                 
Sbjct: 267 --SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 511 ------CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAF 563
                    +     + L+++DLS NEF+G LP       E++ N+      L+     F
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-------ESLTNLSASLLTLDLSSNNF 377
Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 623
               +    Q     LQ++ +         N F G+IP  L N   L  L+LS N L+G 
Sbjct: 378 SGPILPNLCQNPKNTLQELYLQ-------NNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 624 IPVSFENMTALESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFEN 683
           IP S  +++ L  L L  N L+G IP++             +N L G IP G    T  N
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 684 DSYIGNIHLCGE 695
              + N  L GE
Sbjct: 491 WISLSNNRLTGE 502

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 125/310 (40%), Gaps = 47/310 (15%)
Query: 417 LGN---FSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGP--LPRSLAKCIK 471
           LGN    S+ L T    N +  G + DT      + +LDL+   L  P  +P SLA    
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77
Query: 472 LEVVNVGK-NMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHN 530
           L  + +G  N +    P  +  L +L  L +      G +   +     + L  +D S+N
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYN 135
Query: 531 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD 590
             +G LP    PS+ ++ N+        +G  F    I+ A+        K   +F +M 
Sbjct: 136 ALSGTLP----PSISSLPNL--------VGITFDGNRISGAIPDSYGSFSK---LFTSMT 180
Query: 591 FSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF------------ENMTA----- 633
            SRNR  G+IP    N  +L  ++LS N L G+  V F            +N  A     
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 634 ------LESLDLSFNKLDGRIPEQXXXXXXXXXXXXXYNRLWGRIPRGNQFNTFENDSYI 687
                 L  LDL  N++ G +P+              +N L G IP+G     F+  +Y 
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 688 GNIHLCGEPL 697
            N  LCG PL
Sbjct: 300 NNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	776
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-155
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-71
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-60
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  469 bits (1210), Expect = e-155
 Identities = 182/720 (25%), Positives = 289/720 (40%), Gaps = 79/720 (10%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
              + LT LDLS   L+    T   L  + + L  L++ +  +      S     +++  
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155

Query: 62  LDLGGTRIKGNFPDDIFR---LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
           LDL    I G              L+ L ++ N +++G +  S   +       L  LD+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVSRCVN-------LEFLDV 207

Query: 119 GFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSW 178
              NF+  IP  +G+ +    +  + N  +G     +S  + L   ++S N F G +P  
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 179 LFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236
              L SL  + L++N   G I   L    ++L  + L  N   G +P        L  L 
Sbjct: 267 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT 296
           LSSNN SG +  D   K++ L+ LDLS N     +     S+     SL  L  +  N +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEF---SGELPESLTNLSASLLTLDLSSNNFS 381

Query: 297 -EFPGFLRNS--EELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT---HIELHP 350
                 L  +    L  L L NN   G+I  + S     L+ L LS N+++      L  
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 351 WMNITTLDLRNNRIQGSILVPP-----PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLS 405
              +  L L  N ++G I  P       + + L++  N L+G+IP  + + ++L ++SLS
Sbjct: 441 LSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 406 DNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465
           +N L+G IP  +G     L  L L NNS  G+I     +   L  LDLN+N   G +P +
Sbjct: 499 NNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

Query: 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII 525
           + K        +  N I+     ++ +    K      N        S            
Sbjct: 558 MFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVM 585
           +++   + G                                                   
Sbjct: 614 NITSRVYGGHTSPTF----------------------------------------DNNGS 633

Query: 586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645
              +D S N   G IP+ +G+   L +LNL HN ++G+IP    ++  L  LDLS NKLD
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 646 GRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDG 705
           GRIP+ + ++T L  ++LS N L G IP   QF TF    ++ N  LCG PL     ++ 
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  286 bits (734), Expect = 2e-85
 Identities = 142/543 (26%), Positives = 221/543 (40%), Gaps = 112/543 (20%)

Query: 145 NHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI----D 200
           N     +   +  L+ L +  LS ++  G V        SL S+DLS+N L+GP+     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 201 LFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAI--RFDQFSKLKKL 257
           L      L+ + +  N +      S   +L +L +LDLS+N++SGA    +       +L
Sbjct: 122 LGSCSG-LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 258 QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYLLDLSNN 316
           + L +S N +     S ++ +     +L+ L  +  N +   P FL +   L  LD+S N
Sbjct: 181 KHLAISGNKI-----SGDVDVS-RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233

Query: 317 RIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPST- 375
           ++ G  S++            +S              +  L++ +N+  G I   PP   
Sbjct: 234 KLSGDFSRA------------ISTCT----------ELKLLNISSNQFVGPI---PPLPL 268

Query: 376 ---KVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
              + L ++ NK +G+IP  +  +  +L  L LS N+  G +PP  G+ S  L +L L +
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSS 327

Query: 432 NSLEGHI-HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
           N+  G +  DT      L+ LDL+ N+  G LP SL                        
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--------------------- 366

Query: 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
                L  L L SN F GP+  +    P   L+ + L +N FTG +P  +          
Sbjct: 367 --SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL---------- 414

Query: 551 DEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL 610
                                   +  +L  +         S N   G IP  LG+   L
Sbjct: 415 -----------------------SNCSELVSL-------HLSFNYLSGTIPSSLGSLSKL 444

Query: 611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670
           + L L  N L G IP     +  LE+L L FN L G IP  L + T L  ++LS NRL G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 671 RIP 673
            IP
Sbjct: 505 EIP 507

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  281 bits (722), Expect = 1e-83
 Identities = 139/528 (26%), Positives = 203/528 (38%), Gaps = 99/528 (18%)

Query: 153 HHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVR 212
             V+ +  L++  L+  +    V S L +L  L S+ LS + +NG +  F+   SL  + 
Sbjct: 50  DKVTSID-LSSKPLNVGF--SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 213 LEENEIRGTIPNST--FQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF 270
           L  N + G +   T       L  L++SSN L    +     KL  L+ LDLS NS +S 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISG 165

Query: 271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW 330
            +     +      LK                        L +S N+I G +  S     
Sbjct: 166 ANVVGWVLSDGCGELKH-----------------------LAISGNKISGDVDVSRCV-- 200

Query: 331 KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI--LVPPPSTKVLLVSNNKLSGK 388
                                 N+  LD+ +N     I  L    + + L +S NKLSG 
Sbjct: 201 ----------------------NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238

Query: 389 IPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA-NASH 447
              +I + + L+ L++S N   G IPP        L  L L  N   G I D  +     
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDT 295

Query: 448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPC-WLGSLHELKILVLRSNRF 506
           L  LDL+ N   G +P     C  LE + +  N  S   P   L  +  LK+L L  N F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 507 YGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566
            G L   ++T    +L  +DLS N F+G +   +                          
Sbjct: 356 SGEL-PESLTNLSASLLTLDLSSNNFSGPILPNLC------------------------- 389

Query: 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 626
                        Q      + +    N F G+IP  L N   L  L+LS N L+G IP 
Sbjct: 390 -------------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

Query: 627 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674
           S  +++ L  L L  N L+G IP++L+ V  L  L L +N L G IP 
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 8e-13
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 594 NRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE--Q 651
           N     +   L +   L+ L LS++ + G++   F+   +L SLDLS N L G +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 652 LLSVTALALLNLSYNRLWGRIPRGNQFN 679
           L S + L  LN+S N L           
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 609 SLKVLNLSHNSLT---GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 665
            +  ++LS   L      +  S  ++T LESL LS + ++G +        +L  L+LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109

Query: 666 NRLWGRIPRGNQF 678
           N L G +      
Sbjct: 110 NSLSGPVTTLTSL 122

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  311 bits (800), Expect = 8e-96
 Identities = 131/667 (19%), Positives = 240/667 (35%), Gaps = 50/667 (7%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L + +T L+L   +++     +  R   L  L +  N  ++   P+       ++L +L
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPEL-----CQKLPML 75

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
            VL++     +     +    T  TE+   SN       +       L T DLS N    
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNG--PIDLFQLPN-SLQDVRLEENEIRGTIPNSTFQLV 230
                   L +L  + LS N +      +L    N SL+ + L  N+I+   P     + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 231 NLTILDLSSNNLSGAI--RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
            L  L L++  L  ++  +         ++ L LSN+ L + +++  + +K    +L +L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK--WTNLTML 253

Query: 289 RFAYCNITEF-PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
             +Y N+            +L    L  N IQ   S S   G  ++  L+L  +F     
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSF----- 307

Query: 348 LHPWMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSL 404
                  T   +    +              + L + +N + G        L +L+YLSL
Sbjct: 308 -------TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 405 SDNNLSGTIPP---CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGP 461
           S++  S         +    + L  L+L  N +     D F+   HL  LDL  N++   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420

Query: 462 LPRS-LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQ 520
           L          +  + +  N            +  L+ L+LR         + +   P +
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480

Query: 521 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAFYDESITVAMQGHDFQL 579
            L I+DLS+N     +   +   +E ++ +D Q   L  +           A  G     
Sbjct: 481 NLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLW--------KHANPGGPIYF 531

Query: 580 QKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 639
            K L     ++   N F     EV  +   LK+++L  N+L       F N  +L+SL+L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 640 SFNKLDGRIPEQLLSV-TALALLNLSYNRLWGRIPRGNQFNTFENDS-----YIGNIHLC 693
             N +     +        L  L++ +N           F  + N++      + + +LC
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC 651

Query: 694 GEPLTVR 700
             P    
Sbjct: 652 NTPPHYH 658

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  244 bits (624), Expect = 9e-71
 Identities = 115/688 (16%), Positives = 205/688 (29%), Gaps = 125/688 (18%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
             L  L  L+L    L+ +  +TF    +  T L+ LHL + ++  IK    +   + + 
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTF----AFCTNLTELHLMSNSIQKIKNNPFVKQKN-LI 124

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            LDL    +         +L NLQ L L+ N ++     +         L     L++  
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLK---KLELSS 180

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS---GLSYLTTFDLSGNYFQGGVPS 177
                  P     + R   +   +      L   +      + +    LS +       +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDL 237
               L                        +L  + L  N +     +S   L  L    L
Sbjct: 241 TFLGLKWT---------------------NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 238 SSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIK-----YSLPSLKVLRFAY 292
             NN+   +       L  +++L+L  +      S A++          L  L+ L    
Sbjct: 280 EYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 293 CNITEF-PGFLRNSEELYLLDLSNNRIQGRISKSDSP---GWKSLIDLDLSNNFMTHIEL 348
            +I             L  L LSN+    R   +++        L  L+L+ N ++ IE 
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 349 HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPS-ICSLSSLQYLSLSDN 407
             +  +  L                  +VL +  N++  ++       L ++  + LS N
Sbjct: 399 DAFSWLGHL------------------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSLEG--HIHDTFANASHLRSLDLNSNKLEGPLPRS 465
                           L  L L+  +L+        F    +L  LDL++N +       
Sbjct: 441 KYLQLTRNSFALV-PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII 525
           L    KLE++++  N ++  +           +  L                    L I+
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH------------------LHIL 541

Query: 526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVM 585
           +L  N F   +P  +F  +  +K +D                                  
Sbjct: 542 NLESNGFDE-IPVEVFKDLFELKIID---------------------------------- 566

Query: 586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE-NMTALESLDLSFNKL 644
                   N  +     V  N  SLK LNL  N +T      F      L  LD+ FN  
Sbjct: 567 -----LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 645 DGRIPEQLLSVTALALLNLSYNRLWGRI 672
           D         V  +   + +   L    
Sbjct: 622 DCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  220 bits (563), Expect = 3e-62
 Identities = 96/495 (19%), Positives = 177/495 (35%), Gaps = 58/495 (11%)

Query: 230 VNLTILDLSSNNLSG--------------------AIRFDQFSKLKKLQFLDLSNNSLLS 269
           V+  + D S   L+                      +    F++  +L  LD+  N++  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 270 FTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSP 328
                       LP LKVL   +  +++           L  L L +N IQ   +     
Sbjct: 64  LEPEL----CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV- 118

Query: 329 GWKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGSI-----LVPPPSTKVLLV 380
             K+LI LDLS+N ++  +        N+  L L NN+IQ        +    S K L +
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 381 SNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPP--CLGNFSTELITLHLKNNSLEGHI 438
           S+N++    P    ++  L  L L++  L  ++    CL   +T +  L L N+ L    
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 439 HDTFAN--ASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHEL 496
           + TF     ++L  LDL+ N L      S A   +LE   +  N I   F   L  L  +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 497 KILVLRSNRFYGPLCNSNIT-------FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKN 549
           + L L+ +     +  +++           + L  +++  N+  G +   +F  +  +K 
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKY 357

Query: 550 VDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKS 609
           +     L     +    +    +      L  +       + ++N+      +       
Sbjct: 358 LS----LSNSFTSLRTLTNETFVSLAHSPLHIL-------NLTKNKISKIESDAFSWLGH 406

Query: 610 LKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           L+VL+L  N +   +    +  +  +  + LS+NK           V +L  L L    L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 669 WGRIPRGNQFNTFEN 683
                  + F    N
Sbjct: 467 KNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (418), Expect = 9e-43
 Identities = 63/335 (18%), Positives = 120/335 (35%), Gaps = 17/335 (5%)

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
           +    D  + ++       P +  VL +++N+L      +    S L  L +  N +S  
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 413 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL 472
            P         L  L+L++N L      TFA  ++L  L L SN ++        K   L
Sbjct: 65  EPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532
             +++  N +S +       L  L+ L+L +N+           F   +L+ ++LS N+ 
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFS 592
             F P   F ++  +  +              +  +  ++              R +  S
Sbjct: 184 KEFSP-GCFHAIGRLFGLF-----------LNNVQLGPSLTEKLCLELA-NTSIRNLSLS 230

Query: 593 RNRFHGEIPEVLGNFK--SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE 650
            ++            K  +L +L+LS+N+L      SF  +  LE   L +N +      
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 651 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDS 685
            L  +  +  LNL  +     I         ++ S
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (319), Expect = 3e-30
 Identities = 67/360 (18%), Positives = 111/360 (30%), Gaps = 59/360 (16%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
            + L  L +L LS    ++   T +    +L    L                        
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETF-VSLAHSPLHI---------------------- 385

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L+L   +I     D    L +L++L L LN ++   L    W      L+ +  + + +
Sbjct: 386 -LNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRG----LENIFEIYLSY 439

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTG--QLPHHVSGLSYLTTFDLSGNYFQGGVPSW 178
             +      S   +     +             P     L  LT  DLS N         
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

Query: 179 LFTLPSLLSIDLSKNML---------NGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229
           L  L  L  +DL  N L          GPI   +  + L  + LE N            L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
             L I+DL  NNL+  +    F+    L+ L+L  N + S           +  +L  L 
Sbjct: 560 FELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKV---FGPAFRNLTELD 615

Query: 290 FAY----CNITEFPGFLRNSEELYLLDLSNNRIQGRIS--KSDSPGW---KSLIDLDLSN 340
             +    C       F+        ++ ++  I    S    ++P       +   D S+
Sbjct: 616 MRFNPFDCTCESIAWFVN------WINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  249 bits (637), Expect = 3e-73
 Identities = 116/562 (20%), Positives = 192/562 (34%), Gaps = 50/562 (8%)

Query: 5   SKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLD 63
               +LDLSF  L  +   +F     +  +L +L L    +  I+  +  +LS  ++ L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLI 82

Query: 64  LGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNF 123
           L G  I+         L +LQ L       L           P+  L  L  L++     
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN-----FPIGHLKTLKELNVAHNLI 136

Query: 124 TG-SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTF----DLSGNYFQGGVPSW 178
               +P    NLT    +  +SN         +  L  +       DLS N     +   
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG 195

Query: 179 LFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRG-----TIPNSTFQ-LV 230
            F    L  + L  N  +  +     Q    L+  RL   E R          S  + L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 231 NLTI--LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
           NLTI    L+  +       D F+ L  +    L + ++      +           + L
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY------NFGWQHL 309

Query: 289 RFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL 348
               C   +FP     S  L  L  ++N+     S+ D P   SL  LDLS N ++    
Sbjct: 310 ELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGC 364

Query: 349 HPW-----MNITTLDLRNNRIQGSI--LVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQ 400
                    ++  LDL  N +       +     + L   ++ L      S+  SL +L 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI-HDTFANASHLRSLDLNSNKLE 459
           YL +S  +            S+ L  L +  NS + +   D F    +L  LDL+  +LE
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 460 GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF 519
              P +      L+V+N+  N            L+ L++L    N          +    
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFP 542

Query: 520 QALRIIDLSHNEFTGFLPRRIF 541
            +L  ++L+ N+F      + F
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSF 564

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  243 bits (621), Expect = 6e-71
 Identities = 113/652 (17%), Positives = 204/652 (31%), Gaps = 111/652 (17%)

Query: 15  CVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFP 74
           CV  +   T+  +  N  K+                   NL  +  +LDL    ++    
Sbjct: 3   CVEVVPNITYQCMELNFYKIPD-----------------NLPFSTKNLDLSFNPLRHLGS 45

Query: 75  DDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNL 134
              F  P LQ+L L+   ++      +      + L  LS L +           +   L
Sbjct: 46  YSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 135 TRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT-LPSLLSIDLSKN 193
           +   ++     +        +  L  L   +++ N  Q       F+ L +L  +DLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 194 MLNGPI-----DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRF 248
            +          L Q+P     + L  N +   I    F+ + L  L L +N  S  +  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 249 DQFSKLKKLQFLDLSNNSLLSFTSSANISIKY--SLPSLKVLRFAYCNITEF----PGFL 302
                L  L+   L      +  +           L +L +  F    +  +        
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 303 RNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNN 362
                +    L +  I+     S + GW+ L   +L N            ++  L   +N
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHL---ELVNCKFGQFPTLKLKSLKRLTFTSN 335

Query: 363 RIQGSI-LVPPPSTKVLLVSNNKLS--GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGN 419
           +   +   V  PS + L +S N LS  G    S    +SL+YL LS N +       LG 
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG- 394

Query: 420 FSTELITLHLKNNSLEGHI-HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478
              +L  L  ++++L+       F +  +L  LD++                        
Sbjct: 395 -LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------------ 435

Query: 479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPR 538
                 +F      L  L++L +  N F         T   + L  +DLS  +    L  
Sbjct: 436 ------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQ-LSP 487

Query: 539 RIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG 598
             F S+ ++                                       + ++ S N F  
Sbjct: 488 TAFNSLSSL---------------------------------------QVLNMSHNNFFS 508

Query: 599 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLDGRIP 649
                     SL+VL+ S N +  +     ++  ++L  L+L+ N       
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (600), Expect = 5e-68
 Identities = 110/560 (19%), Positives = 175/560 (31%), Gaps = 46/560 (8%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
               +L  LDLS C +  IE   +     +L+ LS L L    +  +   +   LSS + 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQSLALGAFSGLSS-LQ 103

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L    T +       I  L  L+ L +  N      +           L  L  LD+  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHN-----LIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 121 CNFTGSIPTSIGNLT----RATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP 176
                   T +  L         +  + N     +         L    L  N+    V 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 177 SWLFT-LPSLLSIDLSKNMLNGPIDLFQLPNS---------LQDVRLEENEIRGTIPNST 226
                 L  L    L         +L +   S         +++ RL   +         
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 227 FQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL 285
           F  L N++   L S  +        FS     Q L+L N     F +         L SL
Sbjct: 278 FNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFPTL-------KLKSL 327

Query: 286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP-GWKSLIDLDLSNNFMT 344
           K L F           + +   L  LDLS N +  +   S S  G  SL  LDLS N + 
Sbjct: 328 KRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 345 HI--ELHPWMNITTLDLRNNRIQG----SILVPPPSTKVLLVSNNKLSGKIPPSICSLSS 398
            +         +  LD +++ ++     S+ +   +   L +S+             LSS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
           L+ L ++ N+      P +      L  L L    LE      F + S L+ L+++ N  
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 459 EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHE-LKILVLRSNRFYGPLCNSNITF 517
                        L+V++   N I  S    L      L  L L  N F     + +   
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

Query: 518 PFQALRIIDLSHNEFTGFLP 537
             +  R + +         P
Sbjct: 567 WIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  195 bits (498), Expect = 8e-54
 Identities = 87/552 (15%), Positives = 155/552 (28%), Gaps = 99/552 (17%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
            IP ++        +  + N       +       L   DLS    Q        +L  L
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 186 LSIDLSKNMLNGPI-DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG 244
            ++ L+ N +       F   +SLQ +   E  +          L  L  L+++ N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRN 304
               + FS L  L+ LDLS+N + S   +    +         L  +   +         
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN------FMTHIELHPWMNITTLD 358
              L+ L L NN     + K+   G   L    L          +   +      +  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 359 LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLG 418
           +   R               L   +     I      L+++   SL    +         
Sbjct: 259 IEEFR---------------LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---F 300

Query: 419 NFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478
           +++     L L N            +   L+ L   SNK                     
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFS--------------- 342

Query: 479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPR 538
                         L  L+ L L  N      C S   F   +L+ +DLS N        
Sbjct: 343 -----------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---- 387

Query: 539 RIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG 598
            +  +   ++                              L+ +       DF  +    
Sbjct: 388 -MSSNFLGLEQ-----------------------------LEHL-------DFQHSNLKQ 410

Query: 599 EIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS-VT 656
                V  + ++L  L++SH          F  +++LE L ++ N         + + + 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 657 ALALLNLSYNRL 668
            L  L+LS  +L
Sbjct: 471 NLTFLDLSQCQL 482

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  182 bits (465), Expect = 2e-49
 Identities = 95/477 (19%), Positives = 161/477 (33%), Gaps = 41/477 (8%)

Query: 1   MSHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
            S+L+ L HLDLS   +  I      +L         L L    M+ I+P +   +   +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--L 202

Query: 60  TDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
             L L       N        L  L++  L L         +    S L  L  L++ + 
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 119 GFCN---FTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
                  +   I      LT  +  +  S           S        +L    F G  
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKF-GQF 319

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEI--RGTIPNSTFQLVNLT 233
           P+      SL  +  + N          LP+ L+ + L  N +  +G    S F   +L 
Sbjct: 320 PTLKL--KSLKRLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
            LDLS N +        F  L++L+ LD  +++L      +  S+  SL +L  L  ++ 
Sbjct: 377 YLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISHT 431

Query: 294 NITEF-PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM 352
           +      G       L +L ++ N  Q           ++L  LDLS   +  +    + 
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
           ++++L                  +VL +S+N            L+SLQ L  S N++  +
Sbjct: 492 SLSSL------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 413 IPPCLGNFSTELITLHLKNNSLEG--HIHDTFANASHLRSLDLNSNKLEGPLPRSLA 467
               L +F + L  L+L  N                  R L +   ++E   P    
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (357), Expect = 2e-35
 Identities = 80/398 (20%), Positives = 133/398 (33%), Gaps = 39/398 (9%)

Query: 292 YCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---L 348
             N  + P  L  S     LDLS N ++  +       +  L  LDLS   +  IE    
Sbjct: 16  ELNFYKIPDNLPFS--TKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 349 HPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLS 405
               +++TL L  N IQ           S + L+     L+      I  L +L+ L+++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 406 DNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR----SLDLNSNKLEGP 461
            N +     P   +  T L  L L +N ++            +     SLDL+ N +   
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 462 LPRSLAKCIKLEVVNVGKNMIS-DSFPCWLGSLHELKILVLRSNRFYG-PLCNSNITFPF 519
            P +  K I+L  + +  N  S +     +  L  L++  L    F              
Sbjct: 193 QPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 520 QALRIIDLSHNEFTG--FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDF 577
           + L  + +         +    I      + NV     L  +       +I         
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV-SSFSLVSV-------TIERVKDFSYN 303

Query: 578 QLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL 637
              + L      +    +F       L + K      L+  S  G    S  ++ +LE L
Sbjct: 304 FGWQHL------ELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFL 352

Query: 638 DLSFNKLD--GRIPEQLLSVTALALLNLSYNRLWGRIP 673
           DLS N L   G   +     T+L  L+LS+N +     
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 5e-18
 Identities = 43/290 (14%), Positives = 78/290 (26%), Gaps = 77/290 (26%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
           P +  + ++ Y    + N    IP    N       L L  N L      +F +   L+ 
Sbjct: 2   PCVEVVPNITYQ-CMELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           LDL+  +++     +      L  + +  N I          L  L+ L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL----------- 105

Query: 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV 570
                                            +  +K                      
Sbjct: 106 ---------------VAVETNLASLEN----FPIGHLKT--------------------- 125

Query: 571 AMQGHDFQLQKILVMFRAMDFSRNRFHG-EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629
                   L+++       + + N     ++PE   N  +L+ L+LS N +         
Sbjct: 126 --------LKEL-------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 630 NMTALE----SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675
            +  +     SLDLS N ++  I         L  L L  N     + + 
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  245 bits (627), Expect = 2e-71
 Identities = 96/636 (15%), Positives = 194/636 (30%), Gaps = 107/636 (16%)

Query: 53  LNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112
           LN +  +T L L G    G  PD I +L  L++L L  +               +     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH-GEKVNERLFGPKG-ISANMS 134

Query: 113 LSVLDIGFCNFTGSIPTSIG--NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY 170
                    ++  +        + +   +    S+     +          T      N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 171 FQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
               V   +  L  L    +  +          +  + ++   E  +   T       L 
Sbjct: 195 I-TFVSKAVMRLTKLRQFYMGNSPFVAEN----ICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT----SSANISIKYSLPSLK 286
           +LT +++ +      +       L ++Q ++++ N  +S          ++       ++
Sbjct: 250 DLTDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 287 VLRFAYCNITEF--PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT 344
           ++   Y N+  F     L+  ++L +L+   N+++G++     P + S I L        
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-----PAFGSEIKL-------- 355

Query: 345 HIELHPWMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPP--SICSLSSL 399
                      +L+L  N+I     +        + L  ++NKL   IP      S+S +
Sbjct: 356 ----------ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVM 404

Query: 400 QYLSLSDNNLSGTIPPCLGNFSTE------LITLHLKNNSLEGHIHDTFANASHLRSLDL 453
             +  S N +                    + +++L NN +     + F+  S L S++L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
             N L   +P++  K                       + + L  + LR N+    L + 
Sbjct: 465 MGNMLTE-IPKNSLKDENEN----------------FKNTYLLTSIDLRFNKLTK-LSDD 506

Query: 514 NITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573
                   L  IDLS+N F+   P +                                  
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQP--------------------------------- 532

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
            +   L+    +    D   NR   E PE +    SL  L +  N +   +         
Sbjct: 533 LNSSTLKG-FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPN 588

Query: 634 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW 669
           +  LD+  N         +       +  L Y++  
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  231 bits (590), Expect = 3e-66
 Identities = 90/603 (14%), Positives = 187/603 (31%), Gaps = 113/603 (18%)

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG----V 175
              +      S+ +  R T ++      +G++P  +  L+ L    L  +  +       
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPIDLFQLPN----SLQDVRLEENEIRGTIPNSTFQLVN 231
           P  +    S       +        +   P      L    +  +  + +I  S+   + 
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTF-VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFA 291
            T +   SNN++         +L KL+   + N+       + NI   +   + +  +  
Sbjct: 185 DTQIGQLSNNITFV--SKAVMRLTKLRQFYMGNSPF----VAENICEAWENENSEYAQ-- 236

Query: 292 YCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLIDLDLSNNFMTHIE 347
                       N ++L  +++ N     ++     P +      +  ++++ N     E
Sbjct: 237 --QYKTEDLKWDNLKDLTDVEVYNCPNLTKL-----PTFLKALPEMQLINVACNRGISGE 289

Query: 348 LHPWM-----------NITTLDLRNNRIQGSILVPPPST-------KVLLVSNNKLSGKI 389
                            I  + +  N ++     P  ++        +L    N+L G  
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYNQLEG-K 345

Query: 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA-NASHL 448
            P+  S   L  L+L+ N ++  IP     F+ ++  L   +N L+   +   A + S +
Sbjct: 346 LPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 449 RSLDLNSNKLEG-------PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL 501
            ++D + N++         PL  +  K I +  +N+  N IS        +   L  + L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 502 RSNRFYGPLCNSNITFPF-----QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL 556
             N       NS             L  IDL  N+ T  L      +             
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT------------- 510

Query: 557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLS 616
                                 L  ++     +D S N F    P    N  +LK   + 
Sbjct: 511 ---------------------TLPYLVG----IDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 617 H------NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670
           +      N      P       +L  L +  N +   + E++     +++L++  N    
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNIS 601

Query: 671 RIP 673
              
Sbjct: 602 IDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (573), Expect = 7e-64
 Identities = 80/545 (14%), Positives = 166/545 (30%), Gaps = 65/545 (11%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIKPFSLLNLS-STM 59
             L++L  L L      + +R F     S             +              S +
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
               +     + +             +    N  +T  + K+     +  L  L    +G
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NITF-VSKA-----VMRLTKLRQFYMG 214

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
              F                                  L  LT  ++        +P++L
Sbjct: 215 NSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPN---------SLQDVRLEENEIR-GTIPNSTFQL 229
             LP +  I+++ N       L               +Q + +  N ++   +  S  ++
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
             L +L+   N L G +    F    KL  L+L+ N +    +    +       ++ L 
Sbjct: 330 KKLGMLECLYNQLEGKL--PAFGSEIKLASLNLAYNQI----TEIPANFCGFTEQVENLS 383

Query: 290 FAYCNITEFP--GFLRNSEELYLLDLSNNRIQGRISKSDSP------GWKSLIDLDLSNN 341
           FA+  +   P     ++   +  +D S N I     K+  P         ++  ++LSNN
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 342 FMTHI---ELHPWMNITTLDLRNNRIQG---SILVPPPST-------KVLLVSNNKLSGK 388
            ++            +++++L  N +     + L               + +  NKL+  
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK- 502

Query: 389 IPPSI--CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN------NSLEGHIHD 440
           +       +L  L  + LS N+ S   P    N ST L    ++N      N       +
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST-LKGFGIRNQRDAQGNRTLREWPE 560

Query: 441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILV 500
                  L  L + SN +   +   +     + V+++  N        ++    E  + +
Sbjct: 561 GITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

Query: 501 LRSNR 505
           L  ++
Sbjct: 618 LFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (499), Expect = 1e-53
 Identities = 64/486 (13%), Positives = 136/486 (27%), Gaps = 80/486 (16%)

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV 287
               +T L L     SG +  D   +L +L+ L L ++       +  +     + +   
Sbjct: 79  SNGRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGE---KVNERLFGPKGISANMS 134

Query: 288 LRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLIDLDLSNNF 342
                     +   F+         DL  + I     +               +   +N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 343 MTHI--ELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQ 400
           +T +   +     +    + N+           + +       +          +L  L 
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL--------EGHIHDTFANASHLRSLD 452
            + + +      +P  L     E+  +++  N          +            ++ + 
Sbjct: 253 DVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 453 LNSNKL-EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLC 511
           +  N L   P+  SL K  KL ++    N +    P   GS  +L  L L  N+      
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP- 369

Query: 512 NSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVA 571
            +N     + +  +  +HN+           S+  M  +D                    
Sbjct: 370 -ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID-------------------- 408

Query: 572 MQGHDFQLQKILVMFRAMDFSRNRFHG-------EIPEVLGNFKSLKVLNLSHNSLTGNI 624
                              FS N            +        ++  +NLS+N ++   
Sbjct: 409 -------------------FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 625 PVSFENMTALESLDLSFNKLDG-------RIPEQLLSVTALALLNLSYNRLWGRIPRGNQ 677
              F   + L S++L  N L            E   +   L  ++L +N+L  ++    +
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFR 508

Query: 678 FNTFEN 683
             T   
Sbjct: 509 ATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  191 bits (487), Expect = 4e-52
 Identities = 68/446 (15%), Positives = 144/446 (32%), Gaps = 46/446 (10%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           +  L+KL    +       E         N                       NL   +T
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--------DLKWDNLKD-LT 252

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSP--LRELDLLSVLDI 118
           D+++         P  +  LP +Q++ +  N  ++G   K +W +       + + ++ I
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 119 GFCNF-TGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177
           G+ N  T  + TS+  + +   +    N   G           L + +L+ N       +
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPN--SLQDVRLEENEIRG-------TIPNSTFQ 228
           +      + ++  + N L    ++F   +   +  +    NEI          +  + F+
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS---LPSL 285
            +N++ ++LS+N +S   + + FS    L  ++L  N L     ++      +      L
Sbjct: 432 GINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 286 KVLRFAYCNITEFPG--FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS---- 339
             +   +  +T+            L  +DLS N               +L    +     
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL-NSSTLKGFGIRNQRD 548

Query: 340 ---NNFMTHI--ELHPWMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPP 391
              N  +      +    ++T L + +N I+     I    P+  VL + +N        
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLS 605

Query: 392 SICSLSSLQYLSLSDNNLSGTIPPCL 417
            +C         L  +     I  C 
Sbjct: 606 YVCPYIEAGMYMLFYDKTQ-DIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.4 bits (230), Expect = 1e-19
 Identities = 34/292 (11%), Positives = 79/292 (27%), Gaps = 55/292 (18%)

Query: 381 SNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD 440
            N    G       + +  +     + ++ G  P    N +  +  L L+     G + D
Sbjct: 45  KNWSQQGFGTQPGANWNFNK-----ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD 99

Query: 441 TFANASHLRSLDLNSNKLEGP----LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHEL 496
                + L  L L S+  +       P+ ++  +  E     +     +F  +       
Sbjct: 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

Query: 497 KILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL 556
            ++    N           +        I    N  T  + + +                
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM--------------- 203

Query: 557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLS 616
                                +L K+    R      + F  E              N  
Sbjct: 204 ---------------------RLTKL----RQFYMGNSPFVAENICEAWE-----NENSE 233

Query: 617 HNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           +        + ++N+  L  +++       ++P  L ++  + L+N++ NR 
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
           ++ A++       G   +   N+      N   +       VS  +   +  L L     
Sbjct: 38  IWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGA 93

Query: 645 DGRIPEQLLSVTALALLNLSYNRLWG----RIPRGNQFNTFENDSYIGNIHLCGEPLT 698
            GR+P+ +  +T L +L L  +          P+G   N  +       +H     + 
Sbjct: 94  SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  218 bits (558), Expect = 4e-65
 Identities = 82/328 (25%), Positives = 128/328 (39%), Gaps = 72/328 (21%)

Query: 378 LLVSNNKLSG--KIPPSICSLSSLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSL 434
           L +S   L     IP S+ +L  L +L +   NNL G IPP +   + +L  L++ + ++
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNV 113

Query: 435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLH 494
            G I D  +    L +LD + N L G LP S++    L  +    N IS + P   GS  
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173

Query: 495 ELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG 554
           +L                            + +S N  TG +P                 
Sbjct: 174 KL-------------------------FTSMTISRNRLTGKIPPTF-------------A 195

Query: 555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLN 614
            L                                +D SRN   G+   + G+ K+ + ++
Sbjct: 196 NLN----------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 615 LSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674
           L+ NSL  ++         L  LDL  N++ G +P+ L  +  L  LN+S+N L G IP+
Sbjct: 228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 675 GNQFNTFENDSYIGNIHLCGEPLTVRCS 702
           G     F+  +Y  N  LCG PL   C+
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSPLP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (421), Expect = 6e-46
 Identities = 71/352 (20%), Positives = 117/352 (33%), Gaps = 99/352 (28%)

Query: 299 PGFLRNSEELYLLDLSNNRIQGRISKSDSPG-WKSLIDLDLSNNFMTHIELHPWMNITTL 357
                 +  +  LDLS   +        S      L  L +                   
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---------------- 86

Query: 358 DLRNNRIQGSILVPP-----PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
               N + G I  PP          L +++  +SG IP  +  + +L  L  S N LSGT
Sbjct: 87  ----NNLVGPI--PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140

Query: 413 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHL-RSLDLNSNKLEGPLPRSLAKCIK 471
           +PP + +    L+ +    N + G I D++ + S L  S+ ++ N+L G +P + A    
Sbjct: 141 LPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N 198

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531
           L  V++ +NM+        GS                           +  + I L+ N 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSD--------------------------KNTQKIHLAKNS 232

Query: 532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDF 591
               L       +   KN++                                     +D 
Sbjct: 233 LAFDLG-----KVGLSKNLNG------------------------------------LDL 251

Query: 592 SRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
             NR +G +P+ L   K L  LN+S N+L G IP    N+   +    + NK
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (409), Expect = 2e-44
 Identities = 74/292 (25%), Positives = 113/292 (38%), Gaps = 17/292 (5%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            LSS +   D       G   D   +   +  L L+    L    P     S L  L  L
Sbjct: 23  TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-NLPKPYP---IPSSLANLPYL 78

Query: 114 SVLDI-GFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ 172
           + L I G  N  G IP +I  LT+   +     + +G +P  +S +  L T D S N   
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 173 GGVPSWLFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
           G +P  + +LP+L+ I    N ++G I             + +  N + G IP +   L 
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL- 197

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           NL  +DLS N L G      F   K  Q + L+ NSL     + ++       +L  L  
Sbjct: 198 NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSL-----AFDLGKVGLSKNLNGLDL 251

Query: 291 AYCNIT-EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
               I    P  L   + L+ L++S N + G I +      +       +NN
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  157 bits (400), Expect = 5e-43
 Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 17/273 (6%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNM---SLIKPFSLLNLSS 57
            +   ++ +LDLS   L         L +NL  L+ L++G  N     +  P ++  L+ 
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPI--PPAIAKLTQ 102

Query: 58  TMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLD 117
            +  L +  T + G  PD + ++  L  L  + N+ L+G LP S     +  L  L  + 
Sbjct: 103 -LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPS-----ISSLPNLVGIT 155

Query: 118 IGFCNFTGSIPTSIGNLTR-ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP 176
                 +G+IP S G+ ++  T +  + N  TG++P   + L+ L   DLS N  +G   
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Query: 177 SWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236
               +  +   I L+KN L   +    L  +L  + L  N I GT+P    QL  L  L+
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLS 269
           +S NNL G I   Q   L++      +NN  L 
Sbjct: 275 VSFNNLCGEI--PQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 69.1 bits (170), Expect = 9e-13
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLS-FNKLDG 646
           D     + G + +       +  L+LS  +L     IP S  N+  L  L +   N L G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 647 RIPEQLLSVTALALLNLSYNRLWGRIP 673
            IP  +  +T L  L +++  + G IP
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIP 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  226 bits (577), Expect = 1e-64
 Identities = 101/603 (16%), Positives = 179/603 (29%), Gaps = 84/603 (13%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           ++ S+  ++DL    +K            LQ L L+   ++     K+        L  L
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKA-----WHGLHHL 82

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
           S L +         P S   LT    +              +  L  L   +++ N+   
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 174 -GVPSWLFTLPSLLSIDLSKNMLNGPID-----LFQLPNSLQDVRLEENEIRGTIPNSTF 227
             +P++   L +L+ +DLS N +          L + P     + +  N I   I +  F
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY--SLPSL 285
           Q + L  L L  N  S  I       L  L    L         +           L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH 345
            +                         L+                 ++  + L+   + +
Sbjct: 262 TID---------------------EFRLTYTNDFS-DDIVKFHCLANVSAMSLAGVSIKY 299

Query: 346 IELHPWM-NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSL 404
           +E  P      +L +   +++    +  P  K L ++ NK S  I     +L SL YL L
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDL 357

Query: 405 SDNNLSGTIPPCLGNFS-TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
           S N LS +      +     L  L L  N     +   F     L+ LD   + L+    
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 464 RS-LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQAL 522
            S      KL  +++        F      L  L  L +  N F     ++        L
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNL 475

Query: 523 RIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKI 582
             +DLS  +    +   +F ++                                 +LQ +
Sbjct: 476 TFLDLSKCQLEQ-ISWGVFDTLH--------------------------------RLQLL 502

Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
                  + S N              SL  L+ S N +  +  +      +L   +L+ N
Sbjct: 503 -------NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 643 KLD 645
            + 
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (554), Expect = 1e-61
 Identities = 100/527 (18%), Positives = 164/527 (31%), Gaps = 44/527 (8%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           S+ S+L  LDLS C +  IE + +      L  LS L L    +    P S   L+S + 
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAW----HGLHHLSNLILTGNPIQSFSPGSFSGLTS-LE 107

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +L    T++       I +L  L+ L +  N     ++      +    L  L  +D+ +
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHN-----FIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 121 CNFTGSIPTSIGNLTRAT----EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP 176
                     +  L         +  + N     +         L    L GN+    + 
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 177 SWLFT-LPSLLSIDLSKNMLNGPIDLFQLPNS---------LQDVRLEENEIRGTIPNST 226
                 L  L    L         +L     S         + + RL             
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 227 FQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLK 286
             L N++ + L+  ++      +   K  K Q L +    L  F +         LP LK
Sbjct: 282 HCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFPTL-------DLPFLK 331

Query: 287 VLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP-GWKSLIDLDLSNNFMTH 345
            L       +     +     L  LDLS N +      S S  G  SL  LDLS N    
Sbjct: 332 SLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390

Query: 346 I--ELHPWMNITTLDLRNNRIQG----SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSL 399
           +         +  LD +++ ++     S  +       L +S              L+SL
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE 459
             L ++ N+        +   +T L  L L    LE      F     L+ L+++ N L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 460 GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
                   +   L  ++   N I  S          L    L +N  
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  207 bits (530), Expect = 3e-58
 Identities = 103/563 (18%), Positives = 189/563 (33%), Gaps = 59/563 (10%)

Query: 5   SKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLD 63
           S   ++DLSF  L  ++  +F    SN ++L  L L    +  I+  +   L   +++L 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSF----SNFSELQWLDLSRCEIETIEDKAWHGLHH-LSNLI 86

Query: 64  LGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNF 123
           L G  I+   P     L +L+ L      +L   L     S P+ +L  L  L++     
Sbjct: 87  LTGNPIQSFSPGSFSGLTSLENLVAVET-KLAS-LE----SFPIGQLITLKKLNVAHNFI 140

Query: 124 TG-SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT----TFDLSGNYFQGGVPSW 178
               +P    NLT    +  + N+      + +  L        + D+S N     +   
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQ 199

Query: 179 LFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRG-----TIPNSTFQ-LV 230
            F    L  + L  N  +  I     Q    L   RL   E +          S  + L 
Sbjct: 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259

Query: 231 NLTILDLS-SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
           ++TI +   +     +    +F  L  +  + L+  S+                  + L 
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK------HFKWQSLS 313

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
              C + +FP    +   L  L L+ N+      K       SL  LDLS N ++     
Sbjct: 314 IIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCC 368

Query: 350 PWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
            + ++ T  LR                 L +S N     +  +   L  LQ+L    + L
Sbjct: 369 SYSDLGTNSLR----------------HLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411

Query: 410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL-EGPLPRSLAK 468
                        +L+ L +   + +      F   + L +L +  N   +  L    A 
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLS 528
              L  +++ K  +         +LH L++L +  N       +S+      +L  +D S
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL--DSSHYNQLYSLSTLDCS 529

Query: 529 HNEFTGFLPRRIFPSMEAMKNVD 551
            N         +    +++   +
Sbjct: 530 FNRIET-SKGILQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (521), Expect = 5e-57
 Identities = 96/589 (16%), Positives = 186/589 (31%), Gaps = 47/589 (7%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
            +P  I + T    I  + N       +  S  S L   DLS    +         L  L
Sbjct: 25  KVPDDIPSST--KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 186 LSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG 244
            ++ L+ N +       F    SL+++   E ++         QL+ L  L+++ N +  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRN 304
                 FS L  L  +DLS N + + T +    ++ +      L  +   I         
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRI 364
             +L+ L L  N     I K+       L    L              N+   +      
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-----NLEIFEPSIMEG 257

Query: 365 QGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTEL 424
              +     +     ++              L+++  +SL+  ++   +         + 
Sbjct: 258 LCDV-----TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED--VPKHFKW 309

Query: 425 ITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD 484
            +L +    L+        +   L+SL L  NK              L  +++ +N +S 
Sbjct: 310 QSLSIIRCQLK---QFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364

Query: 485 SFPC--WLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFP 542
           S  C       + L+ L L  N        S      + L+ +D  H+          F 
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 543 SMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP- 601
           S+E +  +D               +  +   G    L  +  +      + N F      
Sbjct: 422 SLEKLLYLD-----------ISYTNTKIDFDGIFLGLTSLNTL----KMAGNSFKDNTLS 466

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 661
            V  N  +L  L+LS   L       F+ +  L+ L++S N L          + +L+ L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526

Query: 662 NLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEAL 710
           + S+NR+       ++         +   +L    +   C +    + +
Sbjct: 527 DCSFNRI-----ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (477), Expect = 6e-51
 Identities = 80/487 (16%), Positives = 151/487 (31%), Gaps = 58/487 (11%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFS---LLNLSST 58
             L  L  L+++   +           SNLT L  + L    +  I       L      
Sbjct: 125 GQLITLKKLNVAHNFIH--SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 59  MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWS-SPLRELDLLSVLD 117
              LD+    I     D  F+   L  L L  N   +  +     + + L    L+    
Sbjct: 183 NLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 118 IGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177
               N     P+ +  L                          +  F L+          
Sbjct: 242 KDERNLEIFEPSIMEGLCD----------------------VTIDEFRLTYTNDFSDDIV 279

Query: 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDL 237
               L ++ ++ L+   +    D+ +     Q + +   +++      T  L  L  L L
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVPKH-FKWQSLSIIRCQLKQ---FPTLDLPFLKSLTL 335

Query: 238 SSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297
           + N  S + +      L  L +LDLS N+L      +   +     SL+ L  ++     
Sbjct: 336 TMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDL--GTNSLRHLDLSFNGAII 390

Query: 298 FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTL 357
                   EEL  LD  ++ ++     S     + L+ LD+S           ++ +T+L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 358 DLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSGTIPPC 416
                               L ++ N        ++  + ++L +L LS   L       
Sbjct: 451 ------------------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 417 LGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVN 476
                  L  L++ +N+L       +     L +LD + N++E            L   N
Sbjct: 493 FDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 477 VGKNMIS 483
           +  N ++
Sbjct: 552 LTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  119 bits (301), Expect = 3e-28
 Identities = 56/328 (17%), Positives = 113/328 (34%), Gaps = 30/328 (9%)

Query: 352 MNITTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN 408
           +   T    + ++     VP   P STK + +S N L      S  + S LQ+L LS   
Sbjct: 11  VPNITYQCMDQKLSK---VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
           +              L  L L  N ++     +F+  + L +L     KL       + +
Sbjct: 68  IETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 469 CIKLEVVNVGKNMISD-SFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQ---ALRI 524
            I L+ +NV  N I     P +  +L  L  + L  N     +  +++ F  +       
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLS 185

Query: 525 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE--YMGGAFYDESITVAMQGHDFQLQKI 582
           +D+S N    F+  + F  +          +L    + G F   +I      +   L  +
Sbjct: 186 LDMSLNPID-FIQDQAFQGI----------KLHELTLRGNFNSSNIMKTCLQNLAGLH-V 233

Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKV--LNLSHNSLTGNIPVSFENMTALESLDLS 640
             +               P ++     + +    L++ +   +  V F  +  + ++ L+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 641 FNKLDGRIPEQLLSVTALALLNLSYNRL 668
              +  +  E +        L++   +L
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQL 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  106 bits (266), Expect = 5e-24
 Identities = 55/271 (20%), Positives = 94/271 (34%), Gaps = 18/271 (6%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
               K   L +  C L            +L  L  L L     S+      L    +++ 
Sbjct: 304 PKHFKWQSLSIIRCQLK------QFPTLDLPFLKSLTLTMNKGSISFKKVAL---PSLSY 354

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           LDL    +  +       L    +  L+L+      +  +        L+ L  LD    
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-----FMGLEELQHLDFQHS 409

Query: 122 NFTGSIPTS-IGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
                   S   +L +   +  +  +          GL+ L T  ++GN F+    S +F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 181 T-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
               +L  +DLSK  L      +F   + LQ + +  N +     +   QL +L+ LD S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLS 269
            N +    +       K L F +L+NNS+  
Sbjct: 530 FNRIET-SKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.5 bits (212), Expect = 2e-17
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 4   LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLD 63
            + L HLDLSF    I    F      L +L  L    + +  +  FS       +  LD
Sbjct: 375 TNSLRHLDLSFNGAIIMSANF----MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 64  LGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNF 123
           +  T  K +F      L +L  L +  N            S+       L+ LD+  C  
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTL----SNVFANTTNLTFLDLSKCQL 485

Query: 124 TGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLP 183
                     L R   +  + N+       H + L  L+T D S N  +           
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 184 SLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
           SL   +L+ N +    +  +    +++ +     +      +  ++    +LD +
Sbjct: 546 SLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 49/294 (16%), Positives = 88/294 (29%), Gaps = 77/294 (26%)

Query: 387 GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAS 446
           G + P I  + ++      D  LS  +P    +  +    + L  N L+     +F+N S
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
            L+ LDL+  ++E    ++      L  + +  N I    P     L  L+ L       
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL------- 109

Query: 507 YGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566
                                   +    L       +                      
Sbjct: 110 -------------------VAVETKLAS-LESFPIGQLI--------------------- 128

Query: 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHG-EIPEVLGNFKSLKVLNLSHNSLTGNIP 625
                       L+K+       + + N  H  ++P    N  +L  ++LS+N +     
Sbjct: 129 -----------TLKKL-------NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 626 VSFENMTAL----ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675
              + +        SLD+S N +D  I +Q      L  L L  N     I + 
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKT 223

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  228 bits (582), Expect = 9e-64
 Identities = 91/644 (14%), Positives = 188/644 (29%), Gaps = 107/644 (16%)

Query: 43  NMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSN 102
           +M   +P   L+ +  +T L L G   KG  PD I +L  L++L    +S+        +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 103 WSSPLRELDLL-SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYL 161
                   +     + + +          + NL+   + A   N     +          
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRL-NLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 162 TTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGT 221
           T      N     +   +  L  L  I  + +          +    +D   +  +    
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDN----IAVDWEDANSDYAKQYEN 482

Query: 222 IPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS 281
              S   L +LT ++L +      +  D    L +LQ L+++ N  +S            
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKA------ 535

Query: 282 LPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
                       + T          ++ +  +  N ++   + +       L  LD  +N
Sbjct: 536 ------------DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583

Query: 342 FMTHI-ELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICS-LSSL 399
            + H+      + +T L L  N+I+                       IP   C+    +
Sbjct: 584 KVRHLEAFGTNVKLTDLKLDYNQIEE----------------------IPEDFCAFTDQV 621

Query: 400 QYLSLSDNNLSGTIPPCLGNFS-TELITLHLKNNSLEGHIHDTFA-----NASHLRSLDL 453
           + L  S N L   IP      S   + ++    N +     +           +  ++ L
Sbjct: 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISD-------SFPCWLGSLHELKILVLRSNRF 506
           + N+++       A    +  + +  N+++               + + L  + LR N+ 
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 507 YGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566
              L +         L  +D+S+N F+   P +                           
Sbjct: 741 TS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL------------------------- 773

Query: 567 SITVAMQGHDFQLQK--ILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 624
                         +     +    D   NR   + P  +    SL  L +  N +    
Sbjct: 774 -----------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-- 820

Query: 625 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            V  +    L  LD++ N         +       +  L Y++ 
Sbjct: 821 -VDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  217 bits (554), Expect = 6e-60
 Identities = 88/560 (15%), Positives = 175/560 (31%), Gaps = 71/560 (12%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
             L++L  L       T+  R F           +       + +      L+    +  
Sbjct: 344 GQLTELKVLSFGTHSETVSGRLFGD---EELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 62  LDLGGTRIKGN---FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
            DL    I  N    P       +L+   +   +    ++ K+     ++ L  L ++  
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-----IQRLTKLQIIYF 455

Query: 119 GFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSW 178
               FT            +                  S L  LT  +L        +P +
Sbjct: 456 ANSPFTYDNIAVDWEDANSD-----YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 179 LFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
           L+ LP L S++++ N       L                    + +       + I  + 
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTR--------------LADDEDTGPKIQIFYMG 556

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
            NNL          K+ KL  LD  +N +    +            L  L+  Y  I E 
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT------NVKLTDLKLDYNQIEEI 610

Query: 299 P-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI--------ELH 349
           P  F   ++++  L  S+N+++   +  ++     +  +D S N +           + +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670

Query: 350 PWMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLS-------GKIPPSICSLSSL 399
             +N +T+ L  N IQ     +         +++SNN ++            +  +   L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL------ 453
             + L  N L+             L  + +  N           N+S L++  +      
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDA 789

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
             N++    P  +  C  L  + +G N I       L    +L IL +  N    P  + 
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADN----PNISI 842

Query: 514 NIT--FPFQALRIIDLSHNE 531
           ++T   P+    +  L +++
Sbjct: 843 DVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (480), Expect = 3e-50
 Identities = 70/473 (14%), Positives = 145/473 (30%), Gaps = 68/473 (14%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
             L+KL  +  +    T +    D   +N                 +  S  NL   +TD
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE--------NEELSWSNLKD-LTD 495

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRE----LDLLSVLD 117
           ++L         PD ++ LP LQ L +  N +           + L +       + +  
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 118 IGFCNFTG-SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP 176
           +G+ N        S+  + +   +    N               LT   L  N  +  +P
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIEE-IP 611

Query: 177 SWLFT-LPSLLSIDLSKNMLNGPIDLFQLPN--SLQDVRLEENEIRGTIPN-----STFQ 228
                    +  +  S N L    ++F   +   +  V    N+I     N       ++
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
            +N + + LS N +      + F+    +  + LSNN + S   ++      +  +  +L
Sbjct: 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 289 RFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI-- 346
                                 +DL  N++        +     L ++D+S N  +    
Sbjct: 731 TT--------------------IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

Query: 347 ELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSD 406
           +      +    +R+                     N++  + P  I +  SL  L +  
Sbjct: 771 QPLNSSQLKAFGIRHQ---------------RDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 407 NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE 459
           N++   +   L   + +L  L + +N        +           L  +K +
Sbjct: 816 NDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  186 bits (474), Expect = 2e-49
 Identities = 78/531 (14%), Positives = 150/531 (28%), Gaps = 90/531 (16%)

Query: 187 SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAI 246
           ++D              + +   +   E +               +T L L+     G +
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 247 RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSE 306
             D   +L +L+ L    +S     S      +   P +   R     +     FL   +
Sbjct: 340 P-DAIGQLTELKVLSFGTHSETV--SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 307 ELYLLDLSNNRI----QGRISKSDSPGWKSLIDLDLSNNFMTHI--ELHPWMNITTLDLR 360
            L L DL  + I    + +  K DS        +    N +T I   +     +  +   
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFA 456

Query: 361 NNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNF 420
           N+             +       K       S  +L  L  + L +      +P  L + 
Sbjct: 457 NSPFTYDN--IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 421 STELITLHLKNNSLEG---------HIHDTFANASHLRSLDLNSNKLEG-PLPRSLAKCI 470
             EL +L++  N              + D       ++   +  N LE  P   SL K +
Sbjct: 515 -PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 471 KLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF------YGPLCNSNITFPFQALRI 524
           KL +++   N +        G+  +L  L L  N+       +    +         +  
Sbjct: 574 KLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ--------VEG 623

Query: 525 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV 584
           +  SHN+           S+  M +VD                                 
Sbjct: 624 LGFSHNKLKYIPNIFNAKSVYVMGSVD--------------------------------- 650

Query: 585 MFRAMDFSRNRFHGEIPEVLG-----NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL 639
                 FS N+   E   +          +   + LS+N +       F   + + ++ L
Sbjct: 651 ------FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 640 SFNKLD-------GRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFEN 683
           S N +                +   L  ++L +N+L   +    +  T   
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (466), Expect = 2e-48
 Identities = 75/579 (12%), Positives = 170/579 (29%), Gaps = 69/579 (11%)

Query: 116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
            +     +       + N  R T ++ A     G++P  +  L+ L       +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIR-----GTIPNSTFQ 228
             +     +    +  K+ +              L    L ++ I        I   +  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY-------- 280
            +  T +   +N ++         +L KLQ +  +N+       + +             
Sbjct: 424 SLKDTQIGNLTNRITFIS--KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481

Query: 281 -------SLPSLKVLRFAYCN-ITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP---- 328
                  +L  L  +    C  +T+ P FL +  EL  L+++ NR               
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 329 ----GWKSLIDLDLSNNFMTHIELHPWM----NITTLDLRNNRIQG-SILVPPPSTKVLL 379
                   +    +  N +        +     +  LD  +N+++             L 
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601

Query: 380 VSNNKLSGKIPPSICS-LSSLQYLSLSDNNLSGTIPPCLGNFS-TELITLHLKNNSLEGH 437
           +  N++   IP   C+    ++ L  S N L   IP      S   + ++    N +   
Sbjct: 602 LDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 438 IHDTFA-----NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD-------S 485
             +           +  ++ L+ N+++       A    +  + +  N+++         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 486 FPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSME 545
                 + + L  + LR N+    L +         L  +D+S+N F+   P +   +  
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSS 776

Query: 546 AMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG 605
            +K    + +     G          +         +      +    N    ++ E L 
Sbjct: 777 QLKAFGIRHQR-DAEGNRILRQWPTGIT----TCPSL----IQLQIGSNDI-RKVDEKL- 825

Query: 606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
               L +L+++ N        S           L ++K 
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 2e-24
 Identities = 42/293 (14%), Positives = 83/293 (28%), Gaps = 50/293 (17%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
                KLT L L +                + ++              P      +  + 
Sbjct: 591 FGTNVKLTDLKLDYN--------------QIEEI--------------PEDFCAFTDQVE 622

Query: 61  DLDLGGTRIKGNFPDDIF--RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
            L     ++K   P+      +  +  +  + N ++       + S    +    S + +
Sbjct: 623 GLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTL 680

Query: 119 GFCNFTGSIPTSIGNLTRATEIAFASNHFT-------GQLPHHVSGLSYLTTFDLSGNYF 171
            +              +  + I  ++N  T            +      LTT DL  N  
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 172 QGGVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPN-----SLQDVRLEENEIRGTIPN 224
                 +  T LP L ++D+S N  +  P                    E N I    P 
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 225 STFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANIS 277
                 +L  L + SN++             +L  LD+++N  +S   ++   
Sbjct: 801 GITTCPSLIQLQIGSNDIRKVDE----KLTPQLYILDIADNPNISIDVTSVCP 849

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  223 bits (570), Expect = 1e-63
 Identities = 106/524 (20%), Positives = 179/524 (34%), Gaps = 37/524 (7%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           S L  LT LDL+ C +  I + TF     +  +L  L L A  +  +   +L    + + 
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTF----QSQHRLDTLVLTANPLIFMAETALSGPKA-LK 108

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L    T I       +     L+ L+L  N  ++               + L VLD   
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK-----GFPTEKLKVLDFQN 162

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
                     + +L +AT ++   N      +       +   + +  G      +   L
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 180 F--TLPSLLSIDLSKNMLNGPIDLF---QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI 234
              T+ SL                        S++ + L+++       N+      L  
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN 294
           LDL++ +LS          L  L+ L LS N   +    +      + PSL  L      
Sbjct: 283 LDLTATHLSEL--PSGLVGLSTLKKLVLSANKFENLCQISA----SNFPSLTHLSIKGNT 336

Query: 295 I--TEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW-KSLIDLDLSNNFMTHIELHPW 351
                  G L N E L  LDLS++ I+     +        L  L+LS N    ++   +
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 352 M---NITTLDLRNNRIQG----SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSL 404
                +  LDL   R++     S        KVL +S++ L          L +LQ+L+L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 405 SDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL 462
             N+          +      L  L L    L       F +   +  +DL+ N+L    
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 463 PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
             +L+    +  +N+  N IS   P  L  L + + + LR N  
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  221 bits (565), Expect = 5e-63
 Identities = 116/614 (18%), Positives = 199/614 (32%), Gaps = 75/614 (12%)

Query: 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG 174
             +         IP ++ N T    + F+ N          S L  LT  DL+       
Sbjct: 16  TYNCENLGLN-EIPGTLPNST--ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 175 VPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLT 233
                 +   L ++ L+ N L          P +L+ +   +  I             L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV--LRFA 291
            L L SN++S  I+  +    +KL+ LD  NN++   +     S    L       L   
Sbjct: 133 SLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS----LQQATNLSLNLN 187

Query: 292 YCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP-GWKSLIDLDLSNNFMTHI---- 346
             +I        +S     L+    +    I K       +SL      +     I    
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 347 -ELHPWMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYL 402
            E    M++ +++L+ +       +        + L ++   LS ++P  +  LS+L+ L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306

Query: 403 SLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD-TFANASHLRSLDLNSNKLE-- 459
            LS N           NF   L  L +K N+    +      N  +LR LDL+ + +E  
Sbjct: 307 VLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 460 GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF 519
                 L     L+ +N+  N              +L++L L   R       S      
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NL 424

Query: 520 QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQL 579
             L++++LSH+        ++F  +                                  L
Sbjct: 425 HLLKVLNLSHSLLDI-SSEQLFDGLP--------------------------------AL 451

Query: 580 QKILVMFRAMDFSRNRFHGEI---PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 636
           Q +       +   N F          L     L++L LS   L+     +F ++  +  
Sbjct: 452 QHL-------NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEP 696
           +DLS N+L      + LS      LNL+ N +   +P     +     S    I+L   P
Sbjct: 505 VDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILP-----SLLPILSQQRTINLRQNP 558

Query: 697 LTVRCSNDGLPEAL 710
           L   CSN    E  
Sbjct: 559 LDCTCSNIYFLEWY 572

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  216 bits (552), Expect = 3e-61
 Identities = 105/590 (17%), Positives = 198/590 (33%), Gaps = 71/590 (12%)

Query: 73  FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG 132
            P  +    + + L  + N  L      +        L  L+ LD+  C        +  
Sbjct: 27  IPGTLP--NSTECLEFSFN-VLPTIQNTT-----FSRLINLTFLDLTRCQIYWIHEDTFQ 78

Query: 133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192
           +  R   +   +N         +SG   L                 L    +L S+ L  
Sbjct: 79  SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 193 NMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI--LDLSSNNLSGAIRFD 249
           N ++   +        L+ +  + N I          L   T   L+L+ N+++G     
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE--P 196

Query: 250 QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF-PGFLRNSEEL 308
                   Q L+      L        +   ++ SL +  F   +  +  P       E+
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKN--STIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 309 YL--LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE--LHPWMNITTLDLRNNRI 364
            +  ++L  +     IS +    +  L +LDL+   ++ +   L     +  L L  N+ 
Sbjct: 255 SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313

Query: 365 QG---SILVPPPSTKVLLVSNNKLSGKIPP-SICSLSSLQYLSLSDNNLSGTIPPCLGNF 420
           +          PS   L +  N    ++    + +L +L+ L LS +++  T   C    
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQL 372

Query: 421 S--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS-LAKCIKLEVVNV 477
              + L +L+L  N       + F     L  LDL   +L+    +S       L+V+N+
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 478 GKNMISDSFPCWLGSLHELKILVLRSNRF-YGPLCNSNITFPFQALRIIDLSHNEFTGFL 536
             +++  S       L  L+ L L+ N F  G +  +N       L I+ LS  + +  +
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-I 491

Query: 537 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRF 596
            +  F S++ M +V                                       D S NR 
Sbjct: 492 DQHAFTSLKMMNHV---------------------------------------DLSHNRL 512

Query: 597 HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 646
                E L + K +  LNL+ N ++  +P     ++   +++L  N LD 
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  215 bits (549), Expect = 9e-61
 Identities = 95/473 (20%), Positives = 173/473 (36%), Gaps = 27/473 (5%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           S    L HL      ++ I+         N   L  L+LG+ ++S IK          + 
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNHISSIKLPKGFPTEK-LK 156

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNS-QLTGYLPKSNWSSPLRELDLLSVLDIG 119
            LD     I     +D+  L     L LNLN   + G  P +  S+  + L+        
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF-GGTQNL 215

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLS--YLTTFDLSGNYFQGGVPS 177
              F G   ++I +L       F         P    GL    + + +L  +YF     +
Sbjct: 216 LVIFKGLKNSTIQSLW---LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDL 237
                  L  +DL+   L+         ++L+ + L  N+       S     +LT L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 238 SSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297
             N     +       L+ L+ LDLS++ + +           +L  L+ L  +Y     
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLS 390

Query: 298 F-PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMN 353
                 +   +L LLDL+  R++ + ++S       L  L+LS++ +             
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 354 ITTLDLRNNRIQGSILVPPPST------KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
           +  L+L+ N      +    S       ++L++S   LS     +  SL  + ++ LS N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG 460
            L+ +    L +     I L+L +N +   +       S  R+++L  N L+ 
Sbjct: 511 RLTSSSIEALSHLK--GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  213 bits (545), Expect = 3e-60
 Identities = 99/554 (17%), Positives = 179/554 (32%), Gaps = 47/554 (8%)

Query: 4   LSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
            +    L+ SF VL  I+  TF    S L  L+ L L    +  I   +  +    +  L
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF----SRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTL 86

Query: 63  DLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
            L    +     +        L+ LF      ++  +       PL     L  L +G  
Sbjct: 87  VLTANPLIF-MAETALSGPKALKHLFFIQT-GISS-ID----FIPLHNQKTLESLYLGSN 139

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT--TFDLSGNYFQGGVPSWL 179
           + +           +   + F +N         +S L   T  + +L+GN    G+    
Sbjct: 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGA 198

Query: 180 FTLPSLLSIDLSKNMLNGPIDL---FQLPNSLQDVRLEENEIRGTIPNSTFQ---LVNLT 233
           F      S++         I          SL     E+ +    I  + F+    +++ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVE 257

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
            ++L  +     I  + F     LQ LDL+   L    S         L +LK L  +  
Sbjct: 258 SINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGL-----VGLSTLKKLVLSAN 311

Query: 294 NITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM 352
                      N   L  L +  N  +  +        ++L +LDLS++ +   +     
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 353 -----NITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLS 403
                ++ +L+L  N             P  ++L ++  +L  K   S   +L  L+ L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 404 LSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH---DTFANASHLRSLDLNSNKLEG 460
           LS + L  +           L  L+L+ N          ++      L  L L+   L  
Sbjct: 432 LSHSLLDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 461 PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQ 520
               +      +  V++  N ++ S    L  L  +  L L SN         ++     
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII--LPSLLPILS 547

Query: 521 ALRIIDLSHNEFTG 534
             R I+L  N    
Sbjct: 548 QQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  181 bits (461), Expect = 8e-49
 Identities = 91/494 (18%), Positives = 164/494 (33%), Gaps = 53/494 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSS-TM 59
            +   L  L L    ++ I+            KL +L      +  +    + +L   T 
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS----- 114
             L+L G  I G      F     Q L      Q    + K   +S ++ L L +     
Sbjct: 182 LSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGT-QNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 115 ------------------VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS 156
                              +++    F      +    +   E+   + H + +LP  + 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLE 214
           GLS L    LS N F+          PSL  + +  N     +     +   +L+++ L 
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 215 ENEIR--GTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTS 272
            ++I            L +L  L+LS N     ++ + F +  +L+ LDL+   L    +
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 273 SANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSP--G 329
            +      +L  LKVL  ++  +             L  L+L  N       +  +    
Sbjct: 418 QSPFQ---NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 330 WKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGSI--LVPPPSTKVLLVSNNK 384
              L  L LS   ++ I+         +  +DL +NR+  S    +       L +++N 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534

Query: 385 LSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN 444
           +S  +P  +  LS  + ++L  N L  T       F             LE        N
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCTCS--NIYFLE---WYKENMQKLEDTEDTLCEN 589

Query: 445 ASHLRSLDLNSNKL 458
              LR + L+   L
Sbjct: 590 PPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  174 bits (444), Expect = 1e-46
 Identities = 90/498 (18%), Positives = 159/498 (31%), Gaps = 65/498 (13%)

Query: 223 PNSTFQLVNLTILDLSSNNLSG--------------------AIRFDQFSKLKKLQFLDL 262
                +       +  +  L+                      I+   FS+L  L FLDL
Sbjct: 5   DQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGR 321
           +   +             S   L  L      +       L   + L  L      I   
Sbjct: 65  TRCQIYWIHEDTF----QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS- 119

Query: 322 ISKSDSPGWKSLIDLDLSNNFMTHIELH---PWMNITTLDLRNNRIQG---SILVPPPST 375
           I        K+L  L L +N ++ I+L    P   +  LD +NN I       +      
Sbjct: 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 376 KV--LLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS-TELITLHLKNN 432
               L ++ N ++G I P     +  Q L+         I   L N +   L     ++ 
Sbjct: 180 TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 433 SLEGHIHDTFAN--ASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
             E      F       + S++L  +        +      L+ +++    +S   P  L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

Query: 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
             L  LK LVL +N+F      S   FP  +L  + +  N     L      ++E ++ +
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 551 D----EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGN 606
           D    +    +       +                 L   ++++ S N       E    
Sbjct: 356 DLSHDDIETSDCCNLQLRN-----------------LSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 607 FKSLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 665
              L++L+L+   L      S F+N+  L+ L+LS + LD    +    + AL  LNL  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 666 NRLWGRIPRGNQFNTFEN 683
           N       +  + N+ + 
Sbjct: 459 NHFPKGNIQ--KTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (401), Expect = 7e-41
 Identities = 80/465 (17%), Positives = 161/465 (34%), Gaps = 66/465 (14%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
               KL  LD     +  + +       S+L + + L L      +         S+   
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDM----SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 61  DLDLGGTRIKGNFPDDIF--RLPNLQILFL--NLNSQLTGYLPKSNWSSPLRELDL---- 112
            L+ GGT+        +    + +L +       +  ++  + +      +  ++L    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 113 --------------LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGL 158
                         L  LD+   + +  +P+ +  L+   ++  ++N F        S  
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 159 SYLTTFDLSGNYFQGGVPSWLFT-LPSLLSIDLSKNMLNG---PIDLFQLPNSLQDVRLE 214
             LT   + GN  +  + +     L +L  +DLS + +          +  + LQ + L 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 215 ENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSA 274
            NE       +  +   L +LDL+   L        F  L  L+ L+LS++ L      +
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL----DIS 440

Query: 275 NISIKYSLPSLKVLRFAYCNITEF----PGFLRNSEELYLLDLSNNRIQGRISKSDSPGW 330
           +  +   LP+L+ L     +  +        L+    L +L LS   +   I +      
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSL 499

Query: 331 KSLIDLDLSNNFMTHIELHPWMNIT--TLDLRNNRIQG---SILVPPPSTKVLLVSNNKL 385
           K +  +DLS+N +T   +    ++    L+L +N I     S+L      + + +  N L
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

Query: 386 S-------------------GKIPPSIC-SLSSLQYLSLSDNNLS 410
                                    ++C +   L+ + LSD  LS
Sbjct: 560 DCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (265), Expect = 7e-24
 Identities = 50/318 (15%), Positives = 95/318 (29%), Gaps = 52/318 (16%)

Query: 1   MSHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
           +  LS L  L LS      + Q +     SN   L                         
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISA----SNFPSL------------------------- 327

Query: 60  TDLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
           T L + G   +          L NL+ L L+ +  +      +     L     L  L++
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSH---LQSLNL 383

Query: 119 GFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPS 177
            +         +     +   +  A      +        L  L   +LS +        
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 178 WLFTLPSLLSIDLSKNMLNG----PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLT 233
               LP+L  ++L  N          +  Q    L+ + L   ++     ++   L  + 
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY- 292
            +DLS N L+     +  S LK +  L+L++N +         S+   L   + +     
Sbjct: 504 HVDLSHNRLTS-SSIEALSHLKGIY-LNLASNHISII----LPSLLPILSQQRTINLRQN 557

Query: 293 -----CNITEFPGFLRNS 305
                C+   F  + + +
Sbjct: 558 PLDCTCSNIYFLEWYKEN 575

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  208 bits (530), Expect = 8e-57
 Identities = 131/585 (22%), Positives = 213/585 (36%), Gaps = 62/585 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSL-IKPFSLLNLSSTM 59
             L+    L LSF  +  +   +F      L +L LL LG+    L I   +  NL + +
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSF----PFLEQLQLLELGSQYTPLTIDKEAFRNLPN-L 75

Query: 60  TDLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
             LDLG ++I      D F+ L +L  L L         L         R L  L+ LD+
Sbjct: 76  RILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDL 130

Query: 119 GFCNFTG-SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLS--YLTTFDLSGNYFQGGV 175
                    +  S G L     I F+SN       H +  L    L+ F L+ N     V
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 176 PSWLFTLP------SLLSIDLSKNMLN-------------GPIDLFQLPNSLQDVRLEEN 216
                          L  +D+S N                       L + +       +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 217 EIRGTIPNSTFQ---LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSS 273
            I+     +TF      ++  LDLS   +  ++    F  LK L+ L+L+ N +    + 
Sbjct: 251 NIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKI----NK 304

Query: 274 ANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKS 332
                 Y L +L+VL  +Y  + E          ++  +DL  N I   I        + 
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEK 363

Query: 333 LIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG-KIPP 391
           L  LDL +N +T I   P  +I  + L  N++  ++     +  ++ +S N+L    I  
Sbjct: 364 LQTLDLRDNALTTIHFIP--SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILY 420

Query: 392 SICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH-----DTFANAS 446
            +  +  LQ L L+ N  S        + +  L  L L  N L+         D F   S
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
           HL+ L LN N L    P   +    L  +++  N ++      L     L+IL +  N+ 
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQL 538

Query: 507 YGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
                 +     F +L ++D++HN+F        F +     NV 
Sbjct: 539 -----LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT 578

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  182 bits (463), Expect = 4e-48
 Identities = 109/590 (18%), Positives = 195/590 (33%), Gaps = 93/590 (15%)

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
            +    FCN T  +P     L     +  + N+           L  L   +L   Y   
Sbjct: 7   RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR-GTIPNSTFQ-L 229
            +    F  LP+L  +DL  + +     D FQ    L ++RL    +    + +  F+ L
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
             LT LDLS N +        F KL  L+ +D S+N +          +     +L    
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFS 180

Query: 290 FAYCNITE-----FPGFLRNSEELYL--LDLSNNRIQGRISKSDS-----------PGWK 331
            A  ++       +   +     + L  LD+S N     I+ + S               
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 332 SLIDLDLSNNFMTHIELH-----PWMNITTLDLRNNRI---QGSILVPPPSTKVLLVSNN 383
            ++      + +   + +        ++  LDL +  +      +       KVL ++ N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 384 KLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA 443
           K++     +   L +LQ L+LS N L   +         ++  + L+ N +      TF 
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 444 NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503
               L++LDL  N L      ++     +  + +  N +       L       ++ L  
Sbjct: 360 FLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSE 410

Query: 504 NRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAF 563
           NR    L           L+I+ L+ N F+     +      ++                
Sbjct: 411 NRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL---------------- 453

Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEI-----PEVLGNFKSLKVLNLSHN 618
                                    +    N            +V      L+VL L+HN
Sbjct: 454 -----------------------EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 619 SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            L    P  F ++TAL  L L+ N+L   +    L    L +L++S N+L
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRL-TVLSHNDLP-ANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 1   MSHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSL--LHLGATNMSLIKPFSLLNLSS 57
           +  +  L  L L+    +            +L +L L    L     + +       LS 
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 58  TMTDLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112
            +  L L    +  + P  +F  L  L+ L LN N +LT  L  ++  + L  LD+
Sbjct: 482 -LQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSN-RLT-VLSHNDLPANLEILDI 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  176 bits (447), Expect = 3e-47
 Identities = 97/553 (17%), Positives = 168/553 (30%), Gaps = 77/553 (13%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
            IP ++   T    +  + N       +       L   DLS    Q        +L  L
Sbjct: 21  KIPDNLPFST--KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 186 LSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG 244
            ++ L+ N +    +  F   +SLQ +   E  +          L  L  L+++ N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRN 304
               + FS L  L+ LDLS+N + S   +    +         L  +   +         
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDL------SNNFMTHIELHPWMNITTLD 358
              L+ L L NN     + K+   G   L    L      +   +   +      +  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 359 LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLG 418
           +   R+                  +     I      L+++   SL    +   +     
Sbjct: 259 IEEFRLA---------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD--F 300

Query: 419 NFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478
           +++     L L N                L+ L   SNK       S      LE +++ 
Sbjct: 301 SYNFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLS 355

Query: 479 KNMIS--DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFL 536
           +N +S              LK L L  N        S+     + L  +D  H+      
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 537 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRF 596
              +F S+                                  L  +       D S    
Sbjct: 413 EFSVFLSLR--------------------------------NLIYL-------DISHTHT 433

Query: 597 HGEIPEVLGNFKSLKVLNLSHNSLTGNI-PVSFENMTALESLDLSFNKLDGRIPEQLLSV 655
                 +     SL+VL ++ NS   N  P  F  +  L  LDLS  +L+   P    S+
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 656 TALALLNLSYNRL 668
           ++L +LN++ N+L
Sbjct: 494 SSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  175 bits (445), Expect = 5e-47
 Identities = 106/543 (19%), Positives = 173/543 (31%), Gaps = 73/543 (13%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
               +L  LDLS C +  IE   +     +L+ LS L L    +  +   +   LSS + 
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSS-LQ 103

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L    T +       I  L  L+ L +  N      +           L  L  LD+  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHN-----LIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
                   T +  L               Q+P     L      DLS N     +    F
Sbjct: 159 NKIQSIYCTDLRVLH--------------QMPLLNLSL------DLSLNPMN-FIQPGAF 197

Query: 181 TLPSLLSIDLSKNMLNGPI--DLFQLPNSLQDVRLEENEIRG-----TIPNSTFQ-LVNL 232
               L  + L  N  +  +     Q    L+  RL   E R          S  + L NL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 233 TI--LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           TI    L+  +       D F+ L  +    L + ++       + S  +    L+++  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNC 314

Query: 291 AYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP 350
            +             + L  L  ++N+     S+ D P   SL  LDLS N ++      
Sbjct: 315 KFGQFPTL-----KLKSLKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCS 366

Query: 351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
                                  S K L +S N +   +  +   L  L++L    +NL 
Sbjct: 367 ----------------QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 409

Query: 411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL-EGPLPRSLAKC 469
                 +      LI L + +       +  F   S L  L +  N   E  LP    + 
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529
             L  +++ +  +    P    SL  L++L + SN+         I     +L+ I L  
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHT 527

Query: 530 NEF 532
           N +
Sbjct: 528 NPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (442), Expect = 1e-46
 Identities = 103/603 (17%), Positives = 182/603 (30%), Gaps = 107/603 (17%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           NL  +  +LDL    ++       F  P LQ+L L+   ++      +      + L  L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHL 78

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ- 172
           S L +           +   L+   ++     +        +  L  L   +++ N  Q 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 173 GGVPSWLFTLPSLLSIDLSKNMLNGPID-----LFQLPNSLQDVRLEENEIRGTIPNSTF 227
             +P +   L +L  +DLS N +          L Q+P     + L  N +   I    F
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV 287
           + + L  L L +N  S  +       L  L+   L      +                  
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----------------- 240

Query: 288 LRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDS--PGWKSLIDLDLSNNFMT 344
                 N+ +F    L     L + +     +   +           ++    L +  + 
Sbjct: 241 -----GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 345 HIE-LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLS 403
            ++          L+L N +      +   S K L  ++NK       S   L SL++L 
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLD 353

Query: 404 LSDNNLSG-TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL 462
           LS N LS           +T L  L L  N +   +   F     L  LD   + L+   
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 463 PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQAL 522
             S+                         SL  L  L +           + I     +L
Sbjct: 413 EFSV-----------------------FLSLRNLIYLDISHTHTRV--AFNGIFNGLSSL 447

Query: 523 RIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKI 582
            ++ ++ N F       IF  +                                  L  +
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELR--------------------------------NLTFL 475

Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
                  D S+ +     P    +  SL+VLN++ N L       F+ +T+L+ + L  N
Sbjct: 476 -------DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 643 KLD 645
             D
Sbjct: 529 PWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  156 bits (395), Expect = 2e-40
 Identities = 102/571 (17%), Positives = 179/571 (31%), Gaps = 75/571 (13%)

Query: 73  FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG 132
            PD++    + + L L+ N  L      S           L VLD+  C        +  
Sbjct: 22  IPDNLP--FSTKNLDLSFN-PLRHLGSYS-----FFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192
           +L+  + +    N          SGLS L                 +  L +L  ++++ 
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 193 NMLN--GPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI----LDLSSNNLSGAI 246
           N++      + F    +L+ + L  N+I+         L  + +    LDLS N ++  I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192

Query: 247 RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY------CNITEFP- 299
           +   F ++ +L  L L NN          I     L  L+V R          N+ +F  
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ---GLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDS--PGWKSLIDLDLSNNFMTHIE-LHPWMNITT 356
             L     L + +     +   +           ++    L +  +  ++          
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 357 LDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG-TIPP 415
           L+L N +      +   S K L  ++NK       S   L SL++L LS N LS      
Sbjct: 309 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 416 CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS-LAKCIKLEV 474
                +T L  L L  N +   +   F     L  LD   + L+     S       L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG 534
           +++       +F      L  L++L +  N F         T   + L  +DLS  +   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLE- 483

Query: 535 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRN 594
            L    F S+                                  LQ +       + + N
Sbjct: 484 QLSPTAFNSLS--------------------------------SLQVL-------NMASN 504

Query: 595 RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625
           +       +     SL+ + L  N    + P
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (353), Expect = 6e-35
 Identities = 81/427 (18%), Positives = 143/427 (33%), Gaps = 49/427 (11%)

Query: 1   MSHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
            S+L+ L HLDLS   +  I      +L         L L    M+ I+P +   +   +
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--L 202

Query: 60  TDLDLGGTRIKGNFPDDIFR-LPNLQILFLNLN---SQLTGYLPKSNWSSPLRELDLLSV 115
             L L       N      + L  L++  L L    ++        +    L  L +   
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLP-HHVSGLSYLTTFDLSGNYFQGG 174
                  +   I      LT  +  +  S          +  G  +L   +     F   
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT- 321

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR--GTIPNSTFQLVNL 232
                  L SL  +  + N          LP+ L+ + L  N +   G    S F   +L
Sbjct: 322 -----LKLKSLKRLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
             LDLS N +        F  L++L+ LD  +++L   +     S+  SL +L  L  ++
Sbjct: 376 KYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISH 430

Query: 293 CNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
            +      G       L +L ++ N  Q           ++L  LDLS   +  +    +
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 352 M---NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDN 407
               ++  L++ +N+++                       +P  I   L+SLQ + L  N
Sbjct: 491 NSLSSLQVLNMASNQLK----------------------SVPDGIFDRLTSLQKIWLHTN 528

Query: 408 NLSGTIP 414
               + P
Sbjct: 529 PWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 8e-28
 Identities = 79/397 (19%), Positives = 139/397 (35%), Gaps = 51/397 (12%)

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHP 350
           N  + P  L  S     LDLS N ++  +       +  L  LDLS   +  IE      
Sbjct: 18  NFYKIPDNLPFS--TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 351 WMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
             +++TL L  N IQ           S + L+     L+      I  L +L+ L+++ N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR----SLDLNSNKLEGPLP 463
            +     P   +  T L  L L +N ++            +     SLDL+ N +   + 
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQ 193

Query: 464 RSLAKCIKLEVVNVGKNMISDS-FPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQA- 521
               K I+L  + +  N  S +     +  L  L++  L    F       N+    ++ 
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---EGNLEKFDKSA 250

Query: 522 --------LRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573
                   +    L++ ++       +F  +  + +                 +I     
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS-----------LVSVTIERVKD 299

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
                  + L      +    +F  + P +    KSLK L  + N        S  ++ +
Sbjct: 300 FSYNFGWQHL------ELVNCKFG-QFPTL--KLKSLKRLTFTSNKGGNAF--SEVDLPS 348

Query: 634 LESLDLSFNKLD--GRIPEQLLSVTALALLNLSYNRL 668
           LE LDLS N L   G   +     T+L  L+LS+N +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 43/290 (14%), Positives = 77/290 (26%), Gaps = 77/290 (26%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
           P +  + ++ Y    + N    IP    N       L L  N L      +F +   L+ 
Sbjct: 2   PCVEVVPNITY-QCMELNFY-KIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           LDL+  +++     +      L  + +  N I          L  L+ L           
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL----------- 105

Query: 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV 570
                                    L       ++ +K ++                   
Sbjct: 106 ---------------VAVETNLAS-LENFPIGHLKTLKELN------------------- 130

Query: 571 AMQGHDFQLQKILVMFRAMDFSRNRF-HGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629
                                + N     ++PE   N  +L+ L+LS N +         
Sbjct: 131 --------------------VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 630 NMTALE----SLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675
            +  +     SLDLS N ++  I         L  L L  N     + + 
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           D SR            +   L  L L+ N +      +F  +++L+ L      L     
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117

Query: 650 EQLLSVTALALLNLSYNRLWGRIPRGNQFNTFEN 683
             +  +  L  LN+++N +         F+   N
Sbjct: 118 FPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTN 150

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (410), Expect = 2e-42
 Identities = 94/520 (18%), Positives = 177/520 (34%), Gaps = 50/520 (9%)

Query: 4   LSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
            + +  LDLSF  +T I              L +L L ++ ++ I+  +  +L S +  L
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDL----RACANLQVLILKSSRINTIEGDAFYSLGS-LEHL 79

Query: 63  DLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           DL    +  +     F  L +L+ L L  N            +S    L  L  L IG  
Sbjct: 80  DLSDNHLS-SLSSSWFGPLSSLKYLNLMGNP-----YQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 122 NFTGSIP-TSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
                I       LT   E+   +          +  +  +    L  +     +  +  
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 181 TLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
            L S+  ++L    L         +      ++            S  +L+ L    L  
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE-F 298
           + +        F         D + +     +    +       +++ L      +    
Sbjct: 254 SEVE-------FDDCTLNGLGDFNPSESDVVSELGKVE----TVTIRRLHIPQFYLFYDL 302

Query: 299 PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP------WM 352
                  E++  + + N+++   +  S S   KSL  LDLS N M    L        W 
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 353 NITTLDLRNNRIQ-----GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
           ++ TL L  N ++     G IL+   +   L +S N     +P S      +++L+LS  
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST 420

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA 467
            +   +  C+      L  L + NN+L+            L+ L ++ NKL+  LP + +
Sbjct: 421 GIR-VVKTCI---PQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLKT-LPDA-S 470

Query: 468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY 507
               L V+ + +N +          L  L+ + L +N + 
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  160 bits (406), Expect = 6e-42
 Identities = 91/486 (18%), Positives = 160/486 (32%), Gaps = 52/486 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
              + L  L L    +  IE   F     +L  L  L L   ++S +       LSS + 
Sbjct: 47  RACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSS-LK 101

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            L+L G   +      +F  L NLQ L +      +              L  L+ L+I 
Sbjct: 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-----FAGLTSLNELEIK 156

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
             +       S+ ++     +    +     L      LS +   +L          S L
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 180 FTLPSLLSIDLSKNMLNGPID--------LFQLPNSLQDVRLEENEIRG----------T 221
                   +       +   D        L +    L +V  ++  + G           
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 222 IPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
           +      + V +  L +    L        +S L+K++ + + N+ +     S +     
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFS----Q 331

Query: 281 SLPSLKVLRFAYCNITEF----PGFLRNSEELYLLDLSNNRIQGRISKSDSP--GWKSLI 334
            L SL+ L  +   + E              L  L LS N ++  + K+       K+L 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLT 390

Query: 335 DLDLSNNFMTHI--ELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPS 392
            LD+S N    +         +  L+L +  I+      P + +VL VSNN L       
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSL- 448

Query: 393 ICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452
              L  LQ L +S N L  T+P         L+ + +  N L+      F   + L+ + 
Sbjct: 449 --FLPRLQELYISRNKLK-TLPDAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 453 LNSNKL 458
           L++N  
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (400), Expect = 3e-41
 Identities = 89/543 (16%), Positives = 179/543 (32%), Gaps = 45/543 (8%)

Query: 111 DLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY 170
           D   V D    +FT SIP+ +        +  + N  T      +   + L    L  + 
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 171 FQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ- 228
                    ++L SL  +DLS N L+      F   +SL+ + L  N  +     S F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
           L NL  L + +      IR   F+ L  L  L++   SL ++ S +      S+  +  L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS----LKSIRDIHHL 177

Query: 289 RFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
                        F      +  L+L +  +  R   S  P  +    +       + + 
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
              +  +  L      +            +   + ++             +++ L +   
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE---GPLPR 464
            L   +         ++  + ++N+ +         +   L  LDL+ N +         
Sbjct: 297 YLFYDLSTVYSLL-EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

Query: 465 SLAKCIKLEVVNVGKNMISD--SFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQAL 522
                  L+ + + +N +         L +L  L  L +  N F+      +  +P + +
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWP-EKM 412

Query: 523 RIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKI 582
           R ++LS       +   I  ++E +        +       +   +         +LQ++
Sbjct: 413 RFLNLSSTGIR-VVKTCIPQTLEVLD-------VSNNNLDSFSLFLP--------RLQEL 456

Query: 583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
                    SRN+    +P+    F  L V+ +S N L       F+ +T+L+ + L  N
Sbjct: 457 -------YISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 643 KLD 645
             D
Sbjct: 508 PWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  156 bits (397), Expect = 8e-41
 Identities = 83/517 (16%), Positives = 183/517 (35%), Gaps = 62/517 (11%)

Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEEN 216
            + + + DLS N         L    +L  + L  + +N    D F    SL+ + L +N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 217 EIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN 275
            +  ++ +S F  L +L  L+L  N          F  L  LQ L + N    S     +
Sbjct: 85  HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 276 ISIKYSLPSLKVLRFAYCNITEF-PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLI 334
            +    L SL  L     ++  +    L++  +++ L L  +     + +  +    S+ 
Sbjct: 144 FA---GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVR 199

Query: 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC 394
            L+L +  +   +  P + +  +     ++     V    +   L+   +   ++     
Sbjct: 200 YLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLN 454
              +L  L   + + S  +       +  +  LH+    L   +   ++    ++ + + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 455 SNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCW---LGSLHELKILVLRSNRFYGPLC 511
           ++K+             LE +++ +N++ + +       G+   L+ LVL  N       
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 512 NSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVA 571
              I    + L  +D+S N                            M  +         
Sbjct: 379 TGEILLTLKNLTSLDISRN------------------------TFHPMPDSC-------- 406

Query: 572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 631
                   +K+  +    + S       +       ++L+VL++S+N+L  +  +    +
Sbjct: 407 -----QWPEKMRFL----NLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFSL---FL 450

Query: 632 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
             L+ L +S NKL   +P+  L    L ++ +S N+L
Sbjct: 451 PRLQELYISRNKLK-TLPDASLF-PVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  148 bits (376), Expect = 5e-38
 Identities = 84/510 (16%), Positives = 185/510 (36%), Gaps = 57/510 (11%)

Query: 73  FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG 132
            P  +     ++ L L+ N ++T Y+        LR    L VL +           +  
Sbjct: 20  IPSGLT--AAMKSLDLSFN-KIT-YIG----HGDLRACANLQVLILKSSRINTIEGDAFY 71

Query: 133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT-LPSLLSIDLS 191
           +L     +  + NH +         LS L   +L GN +Q    + LF  L +L ++ + 
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 192 KNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRF 248
                       F    SL ++ ++   +R    + + + + ++  L L  +  +  +  
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA-FLLE 189

Query: 249 DQFSKLKKLQFLDLSNNSLLSFTSSANISIKY-------SLPSLKVLRFAYCNITEFPGF 301
                L  +++L+L + +L  F  S     +        +     +   ++  + +   +
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 302 LRNSEELYLLDLSNNRIQ-------GRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPW 351
           +    E+   D + N +          +S+       ++  L +   ++ +         
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 352 MNITTLDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPS---ICSLSSLQYLSLS 405
             +  + + N+++     S      S + L +S N +  +   +     +  SLQ L LS
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 406 DNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
            N+L  ++            L +L +  N+    + D+      +R L+L+S  +     
Sbjct: 370 QNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI----- 422

Query: 464 RSLAKCI--KLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQA 521
           R +  CI   LEV++V  N +          L  L+ L +  N+    L        F  
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLDSFSL----FLPRLQELYISRNK----LKTLPDASLFPV 474

Query: 522 LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
           L ++ +S N+    +P  IF  + +++ + 
Sbjct: 475 LLVMKISRNQLK-SVPDGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 1e-37
 Identities = 89/501 (17%), Positives = 173/501 (34%), Gaps = 71/501 (14%)

Query: 180 FTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDL 237
            +  +    D         P  L     +++ + L  N+I   I +   +   NL +L L
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLIL 57

Query: 238 SSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297
            S+ ++  I  D F  L  L+ LDLS+N L S +SS        L SLK L         
Sbjct: 58  KSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQT 112

Query: 298 FP--GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWM 352
                   N   L  L + N      I + D  G  SL +L++    + + +   L    
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172

Query: 353 NITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
           +I  L L  +              S + L + +  L+ +   S   +  +          
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFR 231

Query: 410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469
              +     N   +L+   L+ + +E      F + +     D N ++ +        + 
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529
           + +  +++ +  +          L ++K + + +++ +   C+ +      +L  +DLS 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK--SLEFLDLSE 343

Query: 530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAM 589
           N              E +KN   +G                        LQ +       
Sbjct: 344 NLMVE----------EYLKNSACKGAWP--------------------SLQTL------- 366

Query: 590 DFSRNRFH--GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647
             S+N      +  E+L   K+L  L++S N+    +P S +    +  L+LS   +   
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-V 424

Query: 648 IPEQLLSVTALALLNLSYNRL 668
           +   +     L +L++S N L
Sbjct: 425 VKTCIP--QTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 64/322 (19%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           +  LS++   D +   L     +   + S L K+  + +                     
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI--------------------R 289

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L +    +  +       L  ++ + +  NS++   +P     S  + L  L  LD+  
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVE-NSKVF-LVP----CSFSQHLKSLEFLDLSE 343

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ--GGVPSW 178
                             E    ++   G  P        L T  LS N+ +        
Sbjct: 344 NLM--------------VEEYLKNSACKGAWPS-------LQTLVLSQNHLRSMQKTGEI 382

Query: 179 LFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
           L TL +L S+D+S+N  +   D  Q P  ++ + L    IR  +     Q   L +LD+S
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVS 439

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
           +NNL           L +LQ L +S N L +   ++        P L V++ +   +   
Sbjct: 440 NNNLD-----SFSLFLPRLQELYISRNKLKTLPDASL------FPVLLVMKISRNQLKSV 488

Query: 299 P-GFLRNSEELYLLDLSNNRIQ 319
           P G       L  + L  N   
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 46/327 (14%), Positives = 101/327 (30%), Gaps = 37/327 (11%)

Query: 355 TTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
              D R+        +P     + K L +S NK++      + + ++LQ L L  + ++ 
Sbjct: 8   GVCDGRSRSFTS---IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN- 63

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL-EGPLPRSLAKCI 470
           TI          L  L L +N L       F   S L+ L+L  N      +        
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 471 KLEVVNVG-KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529
            L+ + +G     S+        L  L  L +++         S      + +  + L  
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHL 181

Query: 530 NEFTGFLPRRIFPSMEAMK--NVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFR 587
           +E   FL       + +++   + +     +       + ++  M+   F+   +     
Sbjct: 182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT---- 236

Query: 588 AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647
                 +    E+ ++L     L  +     +L G    +      +  L          
Sbjct: 237 ------DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL---------- 280

Query: 648 IPEQLLSVTALALLNLSYNRLWGRIPR 674
                +    +  L++    L+  +  
Sbjct: 281 ---GKVETVTIRRLHIPQFYLFYDLST 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  159 bits (405), Expect = 2e-42
 Identities = 106/458 (23%), Positives = 176/458 (38%), Gaps = 45/458 (9%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
           + L +     LG TN++     + L     +T L      IK    D +  L NL  +  
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
           + N QLT         +PL+ L  L  + +         P  + NLT  T +   +N  T
Sbjct: 76  SNN-QLTD-------ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
              P  +  L+ L   +LS N       S L  L SL  +    N +     L  L   L
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKPLANLTT-L 179

Query: 209 QDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
           + + +  N++  +  +   +L NL  L  ++N +S          L  L  L L+ N L 
Sbjct: 180 ERLDISSNKV--SDISVLAKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLK 234

Query: 269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP 328
              + A+      L +L  L  A   I+     L    +L  L L  N+I    + S   
Sbjct: 235 DIGTLAS------LTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS---NISPLA 284

Query: 329 GWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSI-LVPPPSTKVLLVSNNKLS 386
           G  +L +L+L+ N +  I  +    N+T L L  N I     +      + L   NNK+S
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVS 344

Query: 387 GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAS 446
                S+ +L+++ +LS   N +S   P  L N  T +  L L + +      +  AN S
Sbjct: 345 D--VSSLANLTNINWLSAGHNQISDLTP--LANL-TRITQLGLNDQAWTNAPVNYKANVS 399

Query: 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD 484
              ++   +  L    P +++        ++  N+ S 
Sbjct: 400 IPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY 435

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (394), Expect = 6e-41
 Identities = 96/463 (20%), Positives = 172/463 (37%), Gaps = 50/463 (10%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           + L++     L    +T      D ++ ++L +++ L      +  I     L   + +T
Sbjct: 21  TALAEKMKTVLGKTNVT------DTVSQTDLDQVTTLQADRLGIKSIDGVEYL---NNLT 71

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            ++    ++       +  L  L  + +N N Q+          +PL  L  L+ L +  
Sbjct: 72  QINFSNNQLTD--ITPLKNLTKLVDILMNNN-QIAD-------ITPLANLTNLTGLTLFN 121

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
              T   P  + NLT    +  +SN  +      +SGL+ L                 L 
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLA 174

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
            L +L  +D+S N ++    L +L N L+ +    N+I    P     L NL  L L+ N
Sbjct: 175 NLTTLERLDISSNKVSDISVLAKLTN-LESLIATNNQISDITPLG--ILTNLDELSLNGN 231

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG 300
            L         + L  L  LDL+NN +   ++ A +S    L  L  L+     I+    
Sbjct: 232 QLKD---IGTLASLTNLTDLDLANNQI---SNLAPLS---GLTKLTELKLGANQISNISP 282

Query: 301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDL 359
            L     L  L+L+ N+++     S     K+L  L L  N ++ I  +     +  L  
Sbjct: 283 -LAGLTALTNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338

Query: 360 RNNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLG 418
            NN++   S L    +   L   +N++S   P  + +L+ +  L L+D   +        
Sbjct: 339 YNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 419 NFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGP 461
           N S   I   +KN +       T ++       D+  N     
Sbjct: 397 NVS---IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  154 bits (392), Expect = 1e-40
 Identities = 101/485 (20%), Positives = 167/485 (34%), Gaps = 101/485 (20%)

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           L   +   L K  +   +    L   +  ++ +   I     +    L NLT ++ S+N 
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQ 79

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           L+          L KL  + ++NN +   T  AN      L +L  L      IT+    
Sbjct: 80  LTD---ITPLKNLTKLVDILMNNNQIADITPLAN------LTNLTGLTLFNNQITDID-P 129

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361
           L+N   L  L+LS+N I    + S      SL  L   N       L     +  LD+ +
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGL---TSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS 421
           N++                            +  L++L+ L  ++N +S   P  LG   
Sbjct: 187 NKVSD-----------------------ISVLAKLTNLESLIATNNQISDITP--LGIL- 220

Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481
           T L  L L  N L+  I  T A+ ++L  LDL +N++    P  L+   KL  + +G N 
Sbjct: 221 TNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 541
           IS+  P  L  L  L  L L  N+       SN+      L  + L  N  +   P    
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISPISNLK----NLTYLTLYFNNISDISP---- 326

Query: 542 PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP 601
                         +  +                  +LQ++        F  N+      
Sbjct: 327 --------------VSSLT-----------------KLQRL-------FFYNNKV--SDV 346

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 661
             L N  ++  L+  HN ++   P    N+T +  L L+                 +++ 
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK---ANVSIP 401

Query: 662 NLSYN 666
           N   N
Sbjct: 402 NTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (390), Expect = 2e-40
 Identities = 88/521 (16%), Positives = 174/521 (33%), Gaps = 83/521 (15%)

Query: 156 SGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE 215
           + L+      L        V      L  + ++   +  +     +  L N L  +    
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSN 77

Query: 216 NEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN 275
           N++    P     L  L  + +++N ++        + L  L  L L NN +       +
Sbjct: 78  NQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQI------TD 126

Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW-KSLI 334
           I    +L +L  L  +   I++    L     L  L   N      ++         +L 
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ-----VTDLKPLANLTTLE 180

Query: 335 DLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSI-LVPPPSTKVLLVSNNKLSGKIPPS 392
            LD+S+N ++ I  L    N+ +L   NN+I     L    +   L ++ N+L      +
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGT 238

Query: 393 ICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452
           + SL++L  L L++N +S   P  L    T+L  L L  N +        A  + L +L+
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNI--SPLAGLTALTNLE 293

Query: 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
           LN N+LE   P  ++    L  + +  N ISD  P  + SL +L+ L   +N+       
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL 349

Query: 513 SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAM 572
           +N+T     +  +   HN+ +          +  +                         
Sbjct: 350 ANLT----NINWLSAGHNQISD------LTPLANLTR----------------------- 376

Query: 573 QGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 632
                 + ++         +   +         N      +     +L    P +  +  
Sbjct: 377 ------ITQL-------GLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGG 421

Query: 633 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673
           +    D+++N       E   + +    +        G + 
Sbjct: 422 SYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  148 bits (377), Expect = 1e-38
 Identities = 99/434 (22%), Positives = 152/434 (35%), Gaps = 60/434 (13%)

Query: 105 SPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTF 164
                L       +G  N T ++     +L + T +              V  L+ LT  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 165 DLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPN 224
           + S N      P  L  L  L+ I ++ N +     L  L N L  + L  N+I    P 
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTN-LTGLTLFNNQITDIDPL 130

Query: 225 STFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPS 284
               L NL  L+LSSN +S        S L  LQ L   N      T    ++   +L +
Sbjct: 131 K--NLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQ----VTDLKPLA---NLTT 178

Query: 285 LKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT 344
           L+ L  +   +++    L     L  L  +NN+I             +L +L L+ N + 
Sbjct: 179 LERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLK 234

Query: 345 HIE-LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLS 403
            I  L    N+T LDL NN+I                            +  L+ L  L 
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNL-----------------------APLSGLTKLTELK 271

Query: 404 LSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
           L  N +S   P  L    T L  L L  N LE       +N  +L  L L  N +    P
Sbjct: 272 LGANQISNISP--LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

Query: 464 RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR 523
             ++   KL+ +    N +SD     L +L  +  L    N+       +N+T     + 
Sbjct: 327 --VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLT----RIT 378

Query: 524 IIDLSHNEFTGFLP 537
            + L+   +T    
Sbjct: 379 QLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (338), Expect = 2e-33
 Identities = 84/458 (18%), Positives = 157/458 (34%), Gaps = 103/458 (22%)

Query: 213 LEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTS 272
            ++  I     ++   L       L   N++  +     + L ++  L      + S   
Sbjct: 9   TQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG 63

Query: 273 SANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKS 332
                    L +L  + F+   +T+    L+N  +L  + ++NN+I      +      +
Sbjct: 64  VEY------LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLA---NLTN 113

Query: 333 LIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQG-SILVPPPSTKVLLVSNNKLSGKIP 390
           L  L L NN +T I+ L    N+  L+L +N I   S L    S + L   N        
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD---L 170

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
             + +L++L+ L +S N +S      L    T L +L   NN +           ++L  
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKL-TNLESLIATNNQISDITP--LGILTNLDE 225

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           L LN N+L+     +LA    L  +++  N IS+  P  L  L                 
Sbjct: 226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL----------------- 264

Query: 511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV 570
                      L  + L  N+ +          +  +                       
Sbjct: 265 ---------TKLTELKLGANQISNI------SPLAGLTA--------------------- 288

Query: 571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN 630
                   L  +       + + N+     P  + N K+L  L L  N+++   P    +
Sbjct: 289 --------LTNL-------ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS 329

Query: 631 MTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           +T L+ L    NK+       L ++T +  L+  +N++
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 6e-30
 Identities = 91/440 (20%), Positives = 145/440 (32%), Gaps = 102/440 (23%)

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFA 291
           L    ++ +     I  D  + L +     L   ++    S  +      L  +  L+  
Sbjct: 3   LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVSQTD------LDQVTTLQAD 54

Query: 292 YCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHP 350
              I    G +     L  ++ SNN++       +      L+D+ ++NN +  I  L  
Sbjct: 55  RLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNL---TKLVDILMNNNQIADITPLAN 110

Query: 351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
             N+T L L NN+I                            + +L++L  L LS N +S
Sbjct: 111 LTNLTGLTLFNNQITD-----------------------IDPLKNLTNLNRLELSSNTIS 147

Query: 411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCI 470
                 L    T L  L   N   +       AN + L  LD++SNK+       LAK  
Sbjct: 148 D--ISALSGL-TSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISV--LAKLT 199

Query: 471 KLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLS 528
            LE +    N ISD  P  LG L  L  L L  N+      L +         L  +DL+
Sbjct: 200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS------LTNLTDLDLA 251

Query: 529 HNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRA 588
           +N+ +          +  +                               L ++      
Sbjct: 252 NNQISNL------APLSGLTK-----------------------------LTEL------ 270

Query: 589 MDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 648
                N+     P  L    +L  L L+ N L    P    N+  L  L L FN +    
Sbjct: 271 -KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325

Query: 649 PEQLLSVTALALLNLSYNRL 668
           P  + S+T L  L    N++
Sbjct: 326 P--VSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 56/296 (18%), Positives = 109/296 (36%), Gaps = 64/296 (21%)

Query: 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432
           P     +  +  ++ +I     +L+      L   N++ T+     +   ++ TL     
Sbjct: 2   PLGSATITQDTPIN-QIFT-DTALAEKMKTVLGKTNVTDTVS--QTDL-DQVTTLQADRL 56

Query: 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGS 492
            ++  I D     ++L  ++ ++N+L    P  L    KL  + +  N I+D  P  L +
Sbjct: 57  GIK-SI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LAN 110

Query: 493 LHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 552
           L  L  L L +N+        N+T     L  ++LS N  +         ++  + +   
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLT----NLNRLELSSNTISDI------SALSGLTS--- 157

Query: 553 QGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKV 612
                                     LQ++        F          + L N  +L+ 
Sbjct: 158 --------------------------LQQL-------SFGNQVTD---LKPLANLTTLER 181

Query: 613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           L++S N ++         +T LESL  + N++    P  +L  T L  L+L+ N+L
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
              +      +     +   +  L      +        E +  L  ++ S N+L    P
Sbjct: 30  VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP 85

Query: 650 EQLLSVTALALLNLSYNRLWGRIPRGN 676
             L ++T L  + ++ N++    P  N
Sbjct: 86  --LKNLTKLVDILMNNNQIADITPLAN 110

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  153 bits (389), Expect = 6e-41
 Identities = 77/374 (20%), Positives = 149/374 (39%), Gaps = 27/374 (7%)

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLP-NSLQDVRLEENEIRGTIPNSTFQ-LVNL 232
           + S L        + +     +       +  N+ + V  + + +R  +P +       +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
            +L+L+   +   I    F+    +Q L +  N++             ++P L VL    
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLER 126

Query: 293 CNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
            +++  P G   N+ +L  L +SNN ++ RI         SL +L LS+N +TH++L   
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
            ++   ++  N +  S L  P + + L  S+N ++  +   +     L  L L  NNL  
Sbjct: 186 PSLFHANVSYNLL--STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNL-- 238

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
           T    L N+   L+ + L  N LE  ++  F     L  L +++N+L   L         
Sbjct: 239 TDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPT 296

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF-PFQALRIIDLSHN 530
           L+V+++  N +             L+ L L  N          +       L+ + LSHN
Sbjct: 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI------VTLKLSTHHTLKNLTLSHN 349

Query: 531 EFTGFLPRRIFPSM 544
           ++     R +F ++
Sbjct: 350 DWDCNSLRALFRNV 363

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  139 bits (351), Expect = 7e-36
 Identities = 75/363 (20%), Positives = 132/363 (36%), Gaps = 29/363 (7%)

Query: 103 WSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT 162
             S L+   +   + I               L     + F ++         +     + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 163 TFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGT 221
             +L+    +           ++  + +  N +   P  +FQ    L  + LE N++  +
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 222 IPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
           +P   F     LT L +S+NNL   I  D F     LQ L LS+N L     S       
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL------ 184

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
            +PSL     +Y  ++     +     +  LD S+N I   +    +     L  L L +
Sbjct: 185 -IPSLFHANVSYNLLSTLAIPIA----VEELDASHNSIN-VVRGPVNV---ELTILKLQH 235

Query: 341 NFMTHI-ELHPWMNITTLDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPSICSL 396
           N +T    L  +  +  +DL  N ++       V     + L +SNN+L   +      +
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294

Query: 397 SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
            +L+ L LS N+L   +      F   L  L+L +NS+      T      L++L L+ N
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHN 349

Query: 457 KLE 459
             +
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 2e-31
 Identities = 77/388 (19%), Positives = 145/388 (37%), Gaps = 37/388 (9%)

Query: 11  DLSFCVLTIEQRTFDLLAS----NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGG 66
           D  F  + I+ +T D+        L    ++    + M  +    L +    +  L+L  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLND 78

Query: 67  TRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG 125
            +I+       F     +Q L++  N  +  YLP        + + LL+VL +   + + 
Sbjct: 79  LQIE-EIDTYAFAYAHTIQKLYMGFN-AIR-YLP----PHVFQNVPLLTVLVLERNDLS- 130

Query: 126 SIPTSI-GNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSWLFTLP 183
           S+P  I  N  + T ++ ++N+   ++        + L    LS N     V   L   P
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI--P 186

Query: 184 SLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
           SL   ++S N     +    +P +++++    N I   +         LTIL L  NNL+
Sbjct: 187 SLFHANVSYN----LLSTLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT 239

Query: 244 GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLR 303
                        L  +DLS N L              +  L+ L  +   +     + +
Sbjct: 240 ---DTAWLLNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVALNLYGQ 292

Query: 304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNR 363
               L +LDLS+N +   + + + P +  L +L L +N +  ++L     +  L L +N 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350

Query: 364 IQG-SILVPPPSTKVLLVSNNKLSGKIP 390
               S+     +     V +     KI 
Sbjct: 351 WDCNSLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 6e-28
 Identities = 72/367 (19%), Positives = 135/367 (36%), Gaps = 39/367 (10%)

Query: 3   HLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
            L+    +      +  +          +  ++ LL+L    +  I  ++     + +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALL----DSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQK 97

Query: 62  LDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           L +G   I+   P  +F+ +P L +L L  N  L+  LP             L+ L +  
Sbjct: 98  LYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-DLS-SLP----RGIFHNTPKLTTLSMSN 150

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
            N       +    T    +  +SN  T  +   +S +  L   ++S N       S L 
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLA 202

Query: 181 TLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
              ++  +D S N +N     +      L  ++L+ N +  T          L  +DLS 
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNV---ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSY 257

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299
           N L   I +  F K+++L+ L +SNN L++            +P+LKVL  ++ ++    
Sbjct: 258 NELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHNHLLHVE 311

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM-NITTLD 358
                 + L  L L +N I   +  S      +L +L LS+N      L     N+    
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLKLS---THHTLKNLTLSHNDWDCNSLRALFRNVARPA 367

Query: 359 LRNNRIQ 365
           + +    
Sbjct: 368 VDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (285), Expect = 4e-27
 Identities = 60/375 (16%), Positives = 118/375 (31%), Gaps = 57/375 (15%)

Query: 353 NITTLDLRNNRI---QGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNN 408
           N   +  +N+ +     ++L      ++L +++ ++  +I         ++Q L +  N 
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 104

Query: 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
           +   +PP +      L  L L+ N L       F N   L +L +++N LE     +   
Sbjct: 105 IR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLS 528
              L+ + +  N ++      L  +  L    +  N        S +  P   +  +D S
Sbjct: 164 TTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL------STLAIPIA-VEELDAS 213

Query: 529 HNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKI-----L 583
           HN     +   +   +  +K                              L         
Sbjct: 214 HNSIN-VVRGPVNVELTILKL-------------------------QHNNLTDTAWLLNY 247

Query: 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
                +D S N     +       + L+ L +S+N L   + +  + +  L+ LDLS N 
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH 306

Query: 644 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSN 703
           L   +         L  L L +N +   +      +T      + N+ L           
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSI-VTLK----LSTHHT---LKNLTLSHNDWDCNSLR 357

Query: 704 DGLPEALPLASSDHD 718
                    A  D D
Sbjct: 358 ALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.1 bits (237), Expect = 4e-21
 Identities = 57/336 (16%), Positives = 109/336 (32%), Gaps = 73/336 (21%)

Query: 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI- 393
           D    +  +       +     + L N +I             +   N+ +  K+P ++ 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKI-------------VTFKNSTMR-KLPAALL 65

Query: 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
            S   ++ L+L+D  +   I      ++  +  L++  N++       F N   L  L L
Sbjct: 66  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
             N L            KL  +++  N +         +   L+ L L SNR       +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL------T 178

Query: 514 NITF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAM 572
           ++      +L   ++S+N  +                                       
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTL------------------------------------- 201

Query: 573 QGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 632
                    I +    +D S N  +  +         L +L L HN+LT +      N  
Sbjct: 202 --------AIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYP 248

Query: 633 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            L  +DLS+N+L+  +    + +  L  L +S NRL
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 1e-38
 Identities = 70/355 (19%), Positives = 129/355 (36%), Gaps = 34/355 (9%)

Query: 156 SGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE 215
           + L+      L               L S+  + ++   +     +  L N L+ + L  
Sbjct: 19  ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLNG 75

Query: 216 NEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN 275
           N+I    P S   LV LT L + +N ++          L  L+ L L+ +++   +  AN
Sbjct: 76  NQITDISPLS--NLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISPLAN 130

Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW---KS 332
                 L  +  L     +       L N   L  L ++ +++       D         
Sbjct: 131 ------LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV------KDVTPIANLTD 178

Query: 333 LIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSI-LVPPPSTKVLLVSNNKLSGKIP 390
           L  L L+ N +  I  L    ++       N+I     +        L + NNK++    
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD--L 236

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
             + +LS L +L +  N +S      + +  T+L  L++ +N +         N S L S
Sbjct: 237 SPLANLSQLTWLEIGTNQISD--INAVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNS 291

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505
           L LN+N+L       +     L  + + +N I+D  P  L SL ++      +  
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 2e-38
 Identities = 77/401 (19%), Positives = 132/401 (32%), Gaps = 58/401 (14%)

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
             L      I   FPD    L       L     +T             EL+ ++ L + 
Sbjct: 3   ATLATLPAPINQIFPDA--DLAEGIRAVLQKA-SVTD-------VVTQEELESITKLVVA 52

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
                 SI   I  LT    +    N  T   P  +S L  LT   +  N       S L
Sbjct: 53  GEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISAL 106

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
             L +L  + L+++ ++    L  L   +  + L  N     +      +  L  L ++ 
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTK-MYSLNLGANHNLSDLSPL-SNMTGLNYLTVTE 164

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299
           + +         + L  L  L L+ N +   +  A+      L SL         IT+  
Sbjct: 165 SKVKD---VTPIANLTDLYSLSLNYNQIEDISPLAS------LTSLHYFTAYVNQITDIT 215

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLD 358
             + N   L  L + NN+I      ++      L  L++  N ++ I  +     +  L+
Sbjct: 216 P-VANMTRLNSLKIGNNKITDLSPLANLS---QLTWLEIGTNQISDINAVKDLTKLKMLN 271

Query: 359 LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLG 418
           + +N+I                            + +LS L  L L++N L       +G
Sbjct: 272 VGSNQISD-----------------------ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 419 NFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE 459
              T L TL L  N +        A+ S + S D  +  ++
Sbjct: 309 GL-TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (344), Expect = 3e-35
 Identities = 77/407 (18%), Positives = 148/407 (36%), Gaps = 65/407 (15%)

Query: 7   LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGG 66
              L        I Q   D   ++L +     L   +++ +     L    ++T L + G
Sbjct: 2   AATLATLP--APINQIFPD---ADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAG 53

Query: 67  TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGS 126
            ++       I  L NL+ L LN N Q+T         SPL  L  L+ L IG    T  
Sbjct: 54  EKVAS--IQGIEYLTNLEYLNLNGN-QITD-------ISPLSNLVKLTNLYIGTNKIT-- 101

Query: 127 IPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLL 186
             +++ NLT   E+    ++ +      ++ L+ + + +L  N+      S L  +  L 
Sbjct: 102 DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLN 158

Query: 187 SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAI 246
            + ++++ +     +  L + L  + L  N+I    P +   L +L       N ++   
Sbjct: 159 YLTVTESKVKDVTPIANLTD-LYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITD-- 213

Query: 247 RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSE 306
                + + +L  L + NN +   +  AN      L  L  L      I++     ++  
Sbjct: 214 -ITPVANMTRLNSLKIGNNKITDLSPLAN------LSQLTWLEIGTNQISDINAV-KDLT 265

Query: 307 ELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI---ELHPWMNITTLDLRNNR 363
           +L +L++ +N+I      +       L  L L+NN + +     +    N+TTL L  N 
Sbjct: 266 KLKMLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 364 IQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
           I                            + SLS +     ++  + 
Sbjct: 323 ITDI-----------------------RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (337), Expect = 3e-34
 Identities = 66/379 (17%), Positives = 132/379 (34%), Gaps = 54/379 (14%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRG 220
             T            P     L   +   L K  +   +   +L + +  + +   ++  
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELES-ITKLVVAGEKVAS 58

Query: 221 TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
                   L NL  L+L+ N ++        S L KL  L +  N +   ++  N     
Sbjct: 59  IQGIE--YLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITDISALQN----- 108

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
            L +L+ L     NI++    L N  ++Y L+L  N     +S         L  L ++ 
Sbjct: 109 -LTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTE 164

Query: 341 NFMTHIE-LHPWMNITTLDLRNNRIQGSI-LVPPPSTKVLLVSNNKLSGKIPPSICSLSS 398
           + +  +  +    ++ +L L  N+I+    L    S        N+++      + +++ 
Sbjct: 165 SKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD--ITPVANMTR 222

Query: 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
           L  L + +N ++   P  L N  ++L  L +  N +   I +   + + L+ L++ SN++
Sbjct: 223 LNSLKIGNNKITDLSP--LANL-SQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQI 277

Query: 459 EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFP 518
                  L    +L  + +  N + +     +G L  L  L                   
Sbjct: 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL------------------- 316

Query: 519 FQALRIIDLSHNEFTGFLP 537
                   LS N  T   P
Sbjct: 317 -------FLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (333), Expect = 8e-34
 Identities = 73/462 (15%), Positives = 149/462 (32%), Gaps = 119/462 (25%)

Query: 208 LQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267
              +      I    P++   L       L   +++  +      +L+ +  L ++   +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 268 LSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDS 327
            S            L +L+ L      IT+    L N  +L  L +  N+I      S  
Sbjct: 57  ASIQGIEY------LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT---DISAL 106

Query: 328 PGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLS 386
               +L +L L+ + ++ I  L     + +L+L  N                        
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNL--------------------- 145

Query: 387 GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAS 446
                 + +++ L YL+++++ +    P  + N  T+L +L L  N +E       A+ +
Sbjct: 146 -SDLSPLSNMTGLNYLTVTESKVKDVTP--IANL-TDLYSLSLNYNQIEDISP--LASLT 199

Query: 447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
            L       N++    P  +A   +L  + +G N I+D  P  L +L +L  L       
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL------- 248

Query: 507 YGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566
                              ++  N+ +         +++ +                   
Sbjct: 249 -------------------EIGTNQISDI------NAVKDLTK----------------- 266

Query: 567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV 626
                       L+ +       +   N+       VL N   L  L L++N L      
Sbjct: 267 ------------LKML-------NVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 627 SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
               +T L +L LS N +    P  L S++ +   + +   +
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 2e-31
 Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 41/345 (11%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
             L  +T L ++   +        +     LT L  L+L    ++ I P S L     +T
Sbjct: 41  EELESITKLVVAGEKVA------SIQGIEYLTNLEYLNLNGNQITDISPLSNL---VKLT 91

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +L +G  +I       +  L NL+ L+LN +  ++         SPL  L  +  L++G 
Sbjct: 92  NLYIGTNKITD--ISALQNLTNLRELYLNED-NISD-------ISPLANLTKMYSLNLGA 141

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
            +   S  + + N+T    +    +      P  ++ L+ L +  L+ N  +   P  L 
Sbjct: 142 NHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
           +L SL       N +     +  +   L  +++  N+I    P +   L  LT L++ +N
Sbjct: 197 SLTSLHYFTAYVNQITDITPVANMTR-LNSLKIGNNKITDLSPLA--NLSQLTWLEIGTN 253

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF-P 299
            +S     +    L KL+ L++ +N +   +   N      L  L  L      +     
Sbjct: 254 QISD---INAVKDLTKLKMLNVGSNQISDISVLNN------LSQLNSLFLNNNQLGNEDM 304

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT 344
             +     L  L LS N I      +       +   D +N  + 
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDIRPLA---SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (286), Expect = 1e-27
 Identities = 64/368 (17%), Positives = 124/368 (33%), Gaps = 71/368 (19%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM-NITTLDLRNNRIQG-SI 368
           L      I               I   L    +T +     + +IT L +   ++     
Sbjct: 5   LATLPAPIN---QIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 369 LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLH 428
           +    + + L ++ N+++   P  + +L  L  L +  N +  T    L N  T L  L+
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNL-TNLRELY 116

Query: 429 LKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPC 488
           L  +++   I    AN + + SL+L +N         L+    L  + V ++ + D  P 
Sbjct: 117 LNEDNIS-DI-SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP- 172

Query: 489 WLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEA 546
            + +L +L  L L  N+     PL +        +L       N+ T          +  
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISPLAS------LTSLHYFTAYVNQITDI------TPVAN 219

Query: 547 MKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGN 606
           M                               L  +           N+     P  L N
Sbjct: 220 MTR-----------------------------LNSL-------KIGNNKITDLSP--LAN 241

Query: 607 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 666
              L  L +  N ++ +I  + +++T L+ L++  N++       L +++ L  L L+ N
Sbjct: 242 LSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 667 RLWGRIPR 674
           +L      
Sbjct: 298 QLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (258), Expect = 5e-24
 Identities = 64/296 (21%), Positives = 109/296 (36%), Gaps = 33/296 (11%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
           S+L KLT+L +    +T        L  NLT L  L+L   N+S I P + L   + M  
Sbjct: 85  SNLVKLTNLYIGTNKITD----ISAL-QNLTNLRELYLNEDNISDISPLANL---TKMYS 136

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L+LG      +    +  +  L  L +  + ++          +P+  L  L  L + + 
Sbjct: 137 LNLGANHNLSD-LSPLSNMTGLNYLTVTES-KVKD-------VTPIANLTDLYSLSLNYN 187

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
                 P  + +LT         N  T   P  V+ ++ L +  +  N      P  L  
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           L  L  +++  N ++    +  L   L+ + +  N+I      +   L  L  L L++N 
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTK-LKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQ 298

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297
           L      +    L  L  L LS N +      A+      L  +    FA   I +
Sbjct: 299 LGNEDM-EVIGGLTNLTTLFLSQNHITDIRPLAS------LSKMDSADFANQVIKK 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  144 bits (366), Expect = 4e-37
 Identities = 72/334 (21%), Positives = 121/334 (36%), Gaps = 22/334 (6%)

Query: 183 PSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSN 240
               ++   +      P  +   P   + + L +N I+ T+    F    +L  L+L+ N
Sbjct: 11  AQDRAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN 66

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP- 299
            +S A+    F+ L  L+ L L +N L              L +L  L  +   I     
Sbjct: 67  IVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLD 121

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMNITT 356
              ++   L  L++ +N +   IS     G  SL  L L    +T I    L     +  
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 357 LDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTI 413
           L LR+  I              KVL +S+      + P+     +L  LS++  NL+  +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AV 239

Query: 414 PPCLGNFSTELITLHLKNNSLEGHIH-DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL 472
           P         L  L+L  N +   I          L+ + L   +L    P +      L
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
            V+NV  N ++        S+  L+ L+L SN  
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (351), Expect = 3e-35
 Identities = 60/330 (18%), Positives = 116/330 (35%), Gaps = 45/330 (13%)

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
              +LDL  N +   +  D+F+    L+ L+L+ N + +    A      +L +L+ L  
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLRTLGL 87

Query: 291 AYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-- 347
               +   P G       L  LD+S N+I   +         +L  L++ +N + +I   
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 348 -LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPP-SICSLSSLQYLSLS 405
                 ++  L L    +                        IP  ++  L  L  L L 
Sbjct: 147 AFSGLNSLEQLTLEKCNLT----------------------SIPTEALSHLHGLIVLRLR 184

Query: 406 DNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465
             N++  I          L  L + +      +        +L SL +    L      +
Sbjct: 185 HLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF-PFQ---A 521
           +   + L  +N+  N IS      L  L  L+ + L   +       + +    F+    
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL------AVVEPYAFRGLNY 297

Query: 522 LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
           LR++++S N+ T  L   +F S+  ++ + 
Sbjct: 298 LRVLNVSGNQLT-TLEESVFHSVGNLETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (312), Expect = 4e-30
 Identities = 85/366 (23%), Positives = 141/366 (38%), Gaps = 70/366 (19%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            + +    LDLG  RIK    D+    P+L+ L LN N                     +
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--------------------V 68

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQ 172
           S ++          P +  NL     +   SN     +P  V +GLS LT  D+S N   
Sbjct: 69  SAVE----------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 173 GGVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-L 229
             +  ++F  L +L S+++  N L       F   NSL+ + LE+  +  +IP      L
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
             L +L L   N++ AIR   F +L +L+ L++S+   L   +           +L  L 
Sbjct: 176 HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPN----CLYGLNLTSLS 230

Query: 290 FAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE- 347
             +CN+T  P   +R+   L  L+LS N I   I  S       L ++ L    +  +E 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEP 289

Query: 348 --LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSL 404
                   +  L++  N++                        +  S+  S+ +L+ L L
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT----------------------TLEESVFHSVGNLETLIL 327

Query: 405 SDNNLS 410
             N L+
Sbjct: 328 DSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 5e-29
 Identities = 68/315 (21%), Positives = 119/315 (37%), Gaps = 30/315 (9%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           +    L  L+L+  +++ +E   F    +NL  L  L L +  + LI       LS+ +T
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LT 107

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            LD+   +I     D +F+ L NL+ L +  N  L  Y+           L+ L  L + 
Sbjct: 108 KLDISENKIV-ILLDYMFQDLYNLKSLEVGDN-DLV-YIS----HRAFSGLNSLEQLTLE 160

Query: 120 FCNFTGSIPT-SIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSW 178
            CN T SIPT ++ +L     +     +      +    L  L   ++S   +   +   
Sbjct: 161 KCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 179 LFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILD 236
                +L S+ ++   L   P    +    L+ + L  N I  TI  S    L+ L  + 
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQ 278

Query: 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY---- 292
           L    L+  +    F  L  L+ L++S N L +   S      +S+ +L+ L        
Sbjct: 279 LVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESV----FHSVGNLETLILDSNPLA 333

Query: 293 --CNITEFPGFLRNS 305
             C +          
Sbjct: 334 CDCRLLWVFRRRWRL 348

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-27
 Identities = 65/350 (18%), Positives = 120/350 (34%), Gaps = 38/350 (10%)

Query: 355 TTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
             +     R      VP   P  T++L +  N++         S   L+ L L++N +S 
Sbjct: 14  RAVLCHRKRFVA---VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
            + P   N    L TL L++N L+      F   S+L  LD++ NK+   L         
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531
           L+ + VG N +          L+ L+ L L           +        L ++ L H  
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLN 187

Query: 532 FTGFLPRRIFPSMEAMKNVDEQG--RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAM 589
               +    F  +  +K ++      L+ M               +   L  +       
Sbjct: 188 IN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL----------YGLNLTSL------- 229

Query: 590 DFSRNRFHGEIPE-VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 648
             +       +P   + +   L+ LNLS+N ++         +  L+ + L   +L   +
Sbjct: 230 SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VV 287

Query: 649 PEQLLS-VTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 697
                  +  L +LN+S N+L   +        F +   +  + L   PL
Sbjct: 288 EPYAFRGLNYLRVLNVSGNQL-TTLEES----VFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 46/290 (15%), Positives = 88/290 (30%), Gaps = 56/290 (19%)

Query: 391 PSICS-LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
           P  C   +  + +          +P       TE   L L  N ++    D FA+  HL 
Sbjct: 4   PPRCECSAQDRAVLCHRKRFV-AVPE---GIPTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
            L+LN N +    P +      L  + +  N +          L  L  L +  N+    
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI--- 116

Query: 510 LCNSNI---TF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
                +    F     L+ +++  N+   ++  R F  + ++                  
Sbjct: 117 ---VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSL------------------ 154

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625
                                  +   +        E L +   L VL L H ++     
Sbjct: 155 ---------------------EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 626 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675
            SF+ +  L+ L++S       +    L    L  L++++  L   +P  
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYL 242

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (360), Expect = 3e-36
 Identities = 76/487 (15%), Positives = 146/487 (29%), Gaps = 79/487 (16%)

Query: 200 DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQF 259
           ++ Q  N  +  ++ ++ ++  + +      N+  LDLS N LS  I     +   KL+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLEL 62

Query: 260 LDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
           L+LS+N L       +      L +L+ L                       DL+NN + 
Sbjct: 63  LNLSSNVLYETLDLES------LSTLRTL-----------------------DLNNNYV- 92

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLL 379
                 +     S+  L  +NN ++ +          + L                    
Sbjct: 93  -----QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL-------------------- 127

Query: 380 VSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH 439
            +NNK++          S +QYL L  N +       L   S  L  L+L+ N +     
Sbjct: 128 -ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL 499
                 + L++LDL+SNKL   +         +  +++  N +       L     L+  
Sbjct: 187 QVVF--AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242

Query: 500 VLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 559
            LR N F+   C +   F  +  R+  ++       L  +                    
Sbjct: 243 DLRGNGFH---CGTLRDFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHY------- 291

Query: 560 GGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNS 619
            GA+  E +          L++      +   S       +     N    + ++     
Sbjct: 292 -GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE---RLECERENQARQREIDALKEQ 347

Query: 620 LTGNIPVSFENMTALESLDLSFNKLDGRIP---EQLLSVTALALLNLSYNRLWGRIPRGN 676
               I        A  +L+     LD ++         +       +    L       +
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 677 QFNTFEN 683
                  
Sbjct: 408 PLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (347), Expect = 1e-34
 Identities = 65/472 (13%), Positives = 136/472 (28%), Gaps = 35/472 (7%)

Query: 73  FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG 132
             +        +I  +  +  L   L      S  +    +  LD+     +      + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDS-SLKQALA-----SLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192
             T+   +  +SN         +  LS L T DL+ NY Q      L   PS+ ++  + 
Sbjct: 56  PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN 108

Query: 193 NMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQF 251
           N ++       Q     +++ L  N+I             +  LDL  N +      +  
Sbjct: 109 NNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLL 311
           +    L+ L+L  N +                 LK L  +   +       +++  +  +
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVV------FAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219

Query: 312 DLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL----HPWMNITTLDLR-NNRIQG 366
            L NN++   I K+     ++L   DL  N      L         + T+  +   ++ G
Sbjct: 220 SLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 367 SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS---TE 423
                     +             P    L +L+    +  +  G+    L         
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
              +          I           +L+     L+  +        +L+   + + +  
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD-GTLQQAVGQ 396

Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGF 535
                       L++L     R+              A+R  D+  ++ T  
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV-QNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 8e-34
 Identities = 72/431 (16%), Positives = 128/431 (29%), Gaps = 70/431 (16%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
           +I     N  R        +     L         +   DLSGN       + L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
             ++LS N+L   +DL  L                           L  LDL++N +   
Sbjct: 61  ELLNLSSNVLYETLDLESLS-------------------------TLRTLDLNNNYVQ-- 93

Query: 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRN 304
               +      ++ L  +NN++   + S            K +  A   IT         
Sbjct: 94  ----ELLVGPSIETLHAANNNISRVSCSR-------GQGKKNIYLANNKITMLRDLDEGC 142

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI-ELHPWMNITTLDLRNNR 363
              +  LDL  N I        +    +L  L+L  NF+  +     +  + TLDL +N+
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK 202

Query: 364 IQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTE 423
           +                        + P   S + + ++SL +N L   I   L      
Sbjct: 203 LA----------------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN- 238

Query: 424 LITLHLKNNSLE-GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMI 482
           L    L+ N    G + D F+    ++++   + K          +C    + + G    
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN--EEECTVPTLGHYGAYCC 296

Query: 483 SDSFPCWLGSLHELKILVLRSNRFYGPLCNS--NITFPFQALRIIDLSHNEFTGFLPRRI 540
            D    +   L  LK          G                R ID    ++   +  ++
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-VIDQV 355

Query: 541 FPSMEAMKNVD 551
               +A   ++
Sbjct: 356 TLRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (266), Expect = 2e-24
 Identities = 62/374 (16%), Positives = 115/374 (30%), Gaps = 41/374 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
                +  LDLS   L+ I         +  TKL LL+L +  +        L   ST+ 
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLDLESL---STLR 83

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            LDL    ++     ++   P+++ L    N  ++  +  S      + + L        
Sbjct: 84  TLDLNNNYVQ-----ELLVGPSIETLHAANN-NIS-RVSCSRGQG-KKNIYL------AN 129

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
              T       G  +R   +    N           +    L   +L  N+    V   +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

Query: 180 FTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
                L ++DLS N L     +       +  + L  N++   I  +     NL   DL 
Sbjct: 189 V-FAKLKTLDLSSNKLAFMGPEFQSAAG-VTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
            N        D FSK +++Q +       L    +     + ++P+L       C     
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKL----TGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 299 PGFLR----NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPW 351
           P   R      +E  LL    +  +    + +        ++D        +        
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETER--LECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 352 MNITTLDLRNNRIQ 365
               TL+ +   + 
Sbjct: 360 QAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 9e-19
 Identities = 48/415 (11%), Positives = 111/415 (26%), Gaps = 52/415 (12%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
             LS L  LDL+   +       +L       +  LH    N+S +             +
Sbjct: 77  ESLSTLRTLDLNNNYVQ------EL--LVGPSIETLHAANNNISRVSCSRGQGK----KN 124

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           + L   +I      D      +Q L L LN      +   N++      D L  L++ + 
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNE-----IDTVNFAELAASSDTLEHLNLQYN 179

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
                +   +    +   +  +SN     +       + +T   L  N     +   L  
Sbjct: 180 FIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
             +L   DL  N  +          + +   + +  ++     +  +    T+    +  
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
                         +L  L    ++LLS   S                            
Sbjct: 296 CEDL----PAPFADRLIALKRKEHALLSGQGS--------------------ETERLECE 331

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLD--- 358
             N      +D    + +  +    +   ++ I L+     +     +       LD   
Sbjct: 332 RENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 359 ---LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
              +    +Q +     P   +  +        +       ++++   +  +  +
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 4e-15
 Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 31/232 (13%)

Query: 438 IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELK 497
           IH+   N +  +   +  + L+  L         ++ +++  N +S      L    +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 498 ILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557
           +L L SN  Y  L   +++     LR +DL++N               +++ +       
Sbjct: 62  LLNLSSNVLYETLDLESLS----TLRTLDLNNNYVQE------LLVGPSIETLH------ 105

Query: 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSH 617
                  + +I+  +     Q +K +        + N+         G    ++ L+L  
Sbjct: 106 -----AANNNIS-RVSCSRGQGKKNI------YLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 618 NSLTG-NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           N +   N      +   LE L+L +N +   +    +    L  L+LS N+L
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.1 bits (182), Expect = 5e-14
 Identities = 48/348 (13%), Positives = 97/348 (27%), Gaps = 40/348 (11%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
               S++ +LDL    +      F  LA++   L  L+L    +  +K   +    + + 
Sbjct: 140 EGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF---AKLK 194

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            LDL   ++      +      +  + L  N +L   + K+     LR    L   D+  
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLV-LIEKA-----LRFSQNLEHFDLRG 246

Query: 121 CNF-TGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
             F  G++        R   +  A          +    +  T         +       
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQNEEECTVPTLGHYGAYCCE------- 297

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
                    DL     +  I L +  ++L   +  E E    +            +D   
Sbjct: 298 ---------DLPAPFADRLIALKRKEHALLSGQGSETE---RLECERENQARQREIDALK 345

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299
                 +      + +    L+    +L    S+     + +   L           E  
Sbjct: 346 EQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNG----RRAHAELDGTLQQAVGQIELQ 400

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
                   L LL     R +    +  S    ++ D D+  +  T + 
Sbjct: 401 HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLA 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (356), Expect = 6e-36
 Identities = 82/494 (16%), Positives = 168/494 (34%), Gaps = 69/494 (13%)

Query: 30  NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL- 88
           + T L      ++N++ + P    N+ S  T+     +  + N P        + +  L 
Sbjct: 9   SNTFLQEPLRHSSNLTEM-PVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 89  -NLNSQLTG-YLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH 146
             L+ Q     L     SS       L  L     + T  +P    +L            
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 147 FTGQLPH---------------HVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191
            +   P                 +   S+L   D+  N  +  +P      PSL  I   
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAG 181

Query: 192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQF 251
            N L    +L  LP  L  +  + N ++  +P+     ++L  +   +N L       + 
Sbjct: 182 NNQLEELPELQNLPF-LTAIYADNNSLK-KLPDL---PLSLESIVAGNNILE---ELPEL 233

Query: 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLL 311
             L  L  +   NN L         ++    PSL+ L      +T+ P   ++   L + 
Sbjct: 234 QNLPFLTTIYADNNLL--------KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVS 285

Query: 312 DLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVP 371
           +   + +             +L  L+ S+N +  +      ++  L++ NN++   +   
Sbjct: 286 ENIFSGLSELP--------PNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLI-ELPAL 335

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
           PP  + L+ S N L+ ++P       +L+ L +  N L    P    +    +  L + +
Sbjct: 336 PPRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPES----VEDLRMNS 386

Query: 432 NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491
           +     + +      +L+ L + +N L    P        +E + +    + D +     
Sbjct: 387 H-----LAEVPELPQNLKQLHVETNPLRE-FPDIPE---SVEDLRMNSERVVDPYEFAHE 437

Query: 492 SLHELKILVLRSNR 505
           +  +L+  V   + 
Sbjct: 438 TTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (356), Expect = 6e-36
 Identities = 80/520 (15%), Positives = 167/520 (32%), Gaps = 93/520 (17%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
            +P    N+   TE   A + +    P        +    L                   
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQA 73

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
             ++L+   L+    L +LP  L+ +    N +   +P     L +L + + +   LS  
Sbjct: 74  HELELNNLGLS---SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNS 305
                      L++L +SNN L       N         LK++     ++ + P    + 
Sbjct: 130 P--------PLLEYLGVSNNQLEKLPELQN------SSFLKIIDVDNNSLKKLPDLPPS- 174

Query: 306 EELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ 365
             L  +   NN+++      +      L  +   NN +  +   P +++ ++   NN ++
Sbjct: 175 --LEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKLPDLP-LSLESIVAGNNILE 228

Query: 366 G-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTEL 424
               L   P    +   NN L   +P    SL   + L++ DN L+  +P    +  T L
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSL-TFL 282

Query: 425 ITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD 484
                  + L            +L  L+ +SN++   L         LE +NV  N +  
Sbjct: 283 DVSENIFSGLSELP-------PNLYYLNASSNEIRS-LCDLPPS---LEELNVSNNKLI- 330

Query: 485 SFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSM 544
             P     L   + L+   N        + +    Q L+ + + +N              
Sbjct: 331 ELPALPPRL---ERLIASFNHL------AEVPELPQNLKQLHVEYNPLR-----EFPDIP 376

Query: 545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVL 604
           E+++++     L                     ++ ++    + +    N    E P++ 
Sbjct: 377 ESVEDLRMNSHLA--------------------EVPELPQNLKQLHVETNPLR-EFPDIP 415

Query: 605 GNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
            +   ++ L ++   +      + E    LE      +  
Sbjct: 416 ES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (323), Expect = 1e-31
 Identities = 84/477 (17%), Positives = 150/477 (31%), Gaps = 134/477 (28%)

Query: 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKL------------ 254
            LQ+     + +   +P     + + T    + +            +             
Sbjct: 12  FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 255 KKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLS 314
           ++   L+L+N  L S             P L+ L  +  ++TE P   ++ + L + + +
Sbjct: 71  RQAHELELNNLGLSSLPEL--------PPHLESLVASCNSLTELPELPQSLKSLLVDNNN 122

Query: 315 NNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI-ELHPWMNITTLDLRNNRIQGSILVPPP 373
              +              L  L +SNN +  + EL     +  +D+ NN ++  +   PP
Sbjct: 123 LKALSDLPP--------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP 173

Query: 374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 433
           S + +   NN+L     P + +L  L  +   +N+L   +P    +              
Sbjct: 174 SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLS-------------- 216

Query: 434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSL 493
                         L S+   +N LE      L     L  +    N++  + P    SL
Sbjct: 217 --------------LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSL 259

Query: 494 HELKILVLRSNRFYGPLCNSNITFP--FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
             L +             N     P   Q+L  +D+S N F+                  
Sbjct: 260 EALNVR-----------DNYLTDLPELPQSLTFLDVSENIFS------------------ 290

Query: 552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK 611
                                      L ++      ++ S N     I  +     SL+
Sbjct: 291 --------------------------GLSELPPNLYYLNASSNE----IRSLCDLPPSLE 320

Query: 612 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            LN+S+N L   +P        LE L  SFN L   +PE       L  L++ YN L
Sbjct: 321 ELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELP---QNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  111 bits (279), Expect = 4e-26
 Identities = 81/423 (19%), Positives = 153/423 (36%), Gaps = 75/423 (17%)

Query: 4   LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLD 63
              L  L  S   LT        L  +L  L + +            +L +L   +  L 
Sbjct: 90  PPHLESLVASCNSLT----ELPELPQSLKSLLVDNNNLK--------ALSDLPPLLEYLG 137

Query: 64  LGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL----------- 112
           +   +++   P+ +     L+I+ ++ N  L   LP    S  L  +             
Sbjct: 138 VSNNQLE-KLPE-LQNSSFLKIIDVDNN-SLK-KLPDLPPS--LEFIAAGNNQLEELPEL 191

Query: 113 -----LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS 167
                L+ +     +    +P    +L     I   +N    +LP  +  L +LTT    
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE-ELPE-LQNLPFLTTIYAD 245

Query: 168 GNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF 227
            N  +  +P      PSL ++++  N L    DL +LP SL  + + EN     +     
Sbjct: 246 NNLLKT-LPDLP---PSLEALNVRDNYLT---DLPELPQSLTFLDVSENIFS-GLSEL-- 295

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV 287
              NL  L+ SSN +              L+ L++SNN L+   +          P L+ 
Sbjct: 296 -PPNLYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLIELPAL--------PPRLER 341

Query: 288 LRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
           L  ++ ++ E P   +N   L  L +  N ++      D P   S+ DL ++++     E
Sbjct: 342 LIASFNHLAEVPELPQN---LKQLHVEYNPLR---EFPDIPE--SVEDLRMNSHLAEVPE 393

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
           L    N+  L +  N ++      P S + L +++ ++      +  +   L+      +
Sbjct: 394 L--PQNLKQLHVETNPLR-EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

Query: 408 NLS 410
           +  
Sbjct: 451 HHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.1 bits (245), Expect = 9e-22
 Identities = 73/388 (18%), Positives = 134/388 (34%), Gaps = 67/388 (17%)

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
           S   L+       N+TE P    N +       + +  +      +          +   
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN---------GEQRE 59

Query: 341 NFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQ 400
             ++ +          L+L N  +  S+   PP  + L+ S N L+ ++P    SL SL 
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG 460
             + +   LS   P         L  L + NN LE  + +   N+S L+ +D+++N L+ 
Sbjct: 118 VDNNNLKALSDLPP--------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK 167

Query: 461 PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQ 520
            LP        LE +  G N +    P  L +L  L  +   +N          +     
Sbjct: 168 -LPDLPPS---LEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSL------KKLPDLPL 215

Query: 521 ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQ 580
           +L  I   +N           P ++ +        L  +     +  +          L 
Sbjct: 216 SLESIVAGNNILE------ELPELQNLPF------LTTIY--ADNNLLK--------TLP 253

Query: 581 KILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 640
            +     A++   N    ++PE+  +   L V     + L+   P        L  L+ S
Sbjct: 254 DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNAS 305

Query: 641 FNKLDGRIPEQLLSVTALALLNLSYNRL 668
            N++   + +   S   L  LN+S N+L
Sbjct: 306 SNEIR-SLCDLPPS---LEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 608 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR 667
           +    L L++  L+ ++P    +   LESL  S N L   +PE   S+ +L + N +   
Sbjct: 71  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125

Query: 668 LWGRIP 673
           L    P
Sbjct: 126 LSDLPP 131

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  137 bits (347), Expect = 7e-36
 Identities = 67/342 (19%), Positives = 122/342 (35%), Gaps = 39/342 (11%)

Query: 200 DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQF 259
           ++ Q  N  +  ++ ++ ++  + +      N+  LDLS N LS  I     +   KL+ 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLEL 62

Query: 260 LDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
           L+LS+N L       +      L +L+ L      + E          +  L  +NN I 
Sbjct: 63  LNLSSNVLYETLDLES------LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNI- 111

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHI---ELHPWMNITTLDLRNNRIQ----GSILVPP 372
              S+      +   ++ L+NN +T +   +      +  LDL+ N I       +    
Sbjct: 112 ---SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432
            + + L +  N +   +   +   + L+ L LS N L+  + P   +    +  + L+NN
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSA-AGVTWISLRNN 224

Query: 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGS 492
            L   I      + +L   DL  N            C  L         +       +  
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFH---------CGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 493 LHELKILVLRSNRF--YGPLCNSNITFPFQALRIIDLSHNEF 532
           L               YG  C  ++  PF A R+I L H+  
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPF-ADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 4e-31
 Identities = 58/352 (16%), Positives = 110/352 (31%), Gaps = 45/352 (12%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
           +I     N  R        +     L         +   DLSGN       + L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
             ++LS N+L   +DL  L   L+ + L  N ++  +        ++  L  ++NN+S  
Sbjct: 61  ELLNLSSNVLYETLDLESLST-LRTLDLNNNYVQ-ELLV----GPSIETLHAANNNIS-R 113

Query: 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT--EFPGFLR 303
           +   +    +  + + L+NN +                 ++ L      I    F     
Sbjct: 114 VSCSRG---QGKKNIYLANNKITMLRDLDE----GCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI--ELHPWMNITTLDLRN 361
           +S+ L  L+L  N I           +  L  LDLS+N +  +  E      +T + LRN
Sbjct: 167 SSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS 421
           N++                        I  ++    +L++  L  N           + +
Sbjct: 224 NKLV----------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLE 473
             + T+  +        ++       L      +   E        + I L 
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTL--GHYGAYCCEDLPAPFADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.3 bits (248), Expect = 8e-23
 Identities = 47/341 (13%), Positives = 105/341 (30%), Gaps = 60/341 (17%)

Query: 353 NITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
                 + ++ ++    S+     + K L +S N LS      +   + L+ L+LS N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469
                  L +  + L TL L NN ++            + +L   +N +   +  S  + 
Sbjct: 71  YE--TLDLESL-STLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRGQ- 120

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH 529
              + + +  N I+       G    ++ L L+ N     +  + +      L  ++L +
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQY 178

Query: 530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAM 589
           N     +  ++  +                                  +L+ +       
Sbjct: 179 NFIYD-VKGQVVFA----------------------------------KLKTL------- 196

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           D S N+    +     +   +  ++L +N L   I  +      LE  DL  N       
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGT 253

Query: 650 EQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNI 690
            +        +  ++   +     +  +  T     + G  
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 49/276 (17%), Positives = 94/276 (34%), Gaps = 59/276 (21%)

Query: 395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLN 454
           + +  +   ++D++L       L   +  +  L L  N L        A  + L  L+L+
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 455 SNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN 514
           SN L   L   L     L  +++  N + +     L     ++ L   +N        S 
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI------SR 113

Query: 515 ITFP-FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573
           ++    Q  + I L++N+ T  L                                     
Sbjct: 114 VSCSRGQGKKNIYLANNKITM-LRDLDEGCRS---------------------------- 144

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHG-EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 632
               ++Q +       D   N        E+  +  +L+ LNL +N +  ++        
Sbjct: 145 ----RVQYL-------DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFA 191

Query: 633 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            L++LDLS NKL   +  +  S   +  ++L  N+L
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 49/342 (14%), Positives = 102/342 (29%), Gaps = 78/342 (22%)

Query: 27  LASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQIL 86
           +  N  +  +  +  +++         +  + + +LDL G  +      D+     L++L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 87  FLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH 146
            L+ N  L                                    + +L+           
Sbjct: 64  NLSSN-VLY------------------------------ETL-DLESLST---------- 81

Query: 147 FTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLP 205
                         L T DL+ NY Q      L   PS+ ++  + N ++       Q  
Sbjct: 82  --------------LRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQ-- 120

Query: 206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNN 265
              +++ L  N+I             +  LDL  N +      +  +    L+ L+L  N
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 266 SLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKS 325
            +                 LK L  +   +       +++  +  + L NN++   I K+
Sbjct: 180 FIYDVKGQVV------FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 326 DSPGWKSLIDLDLSNNFMTHIEL----HPWMNITTLDLRNNR 363
                ++L   DL  N      L         + T+  +  +
Sbjct: 233 LR-FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 3e-21
 Identities = 54/340 (15%), Positives = 112/340 (32%), Gaps = 65/340 (19%)

Query: 331 KSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRI---QGSILVPPPSTKVLLVSNNK 384
                  ++++ +            N+  LDL  N +     + L P    ++L +S+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 385 LSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFAN 444
           L       + SLS+L+ L L++N +   +          + TLH  NN++          
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNISRVSCSRGQG 121

Query: 445 ASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD-SFPCWLGSLHELKILVLRS 503
               +++ L +NK+            +++ +++  N I   +F     S   L+ L L+ 
Sbjct: 122 ---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 504 NRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAF 563
           N     + +      F  L+ +DLS N+        + P  ++                 
Sbjct: 179 NF----IYDVKGQVVFAKLKTLDLSSNKLA-----FMGPEFQSAAG-------------- 215

Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLT-G 622
                          +  I           N+    I + L   ++L+  +L  N    G
Sbjct: 216 ---------------VTWI-------SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 623 NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 662
            +   F     ++++     K      E+  +V  L    
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 58/320 (18%), Positives = 103/320 (32%), Gaps = 38/320 (11%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
                +  LDLS   L+ I         +  TKL LL+L +  +        L   ST+ 
Sbjct: 31  QSAWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLDLESL---STLR 83

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            LDL    ++     ++   P+++ L    N  ++  +  S      + + L        
Sbjct: 84  TLDLNNNYVQ-----ELLVGPSIETLHAANN-NIS-RVSCSRGQG-KKNIYL------AN 129

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
              T       G  +R   +    N           +    L   +L  N+    V   +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

Query: 180 FTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
                L ++DLS N L     +       +  + L  N++   I  +     NL   DL 
Sbjct: 189 V-FAKLKTLDLSSNKLAFMGPEFQSAAG-VTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
            N        D FSK +++Q +       L    +     + ++P+L       C     
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKL----TGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 299 PGFLRNSEELYLLDLSNNRI 318
           P   R      L+ L ++  
Sbjct: 302 PFADR------LIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 40/232 (17%), Positives = 85/232 (36%), Gaps = 31/232 (13%)

Query: 438 IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELK 497
           IH+   N +  +   +  + L+  L         ++ +++  N +S      L    +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 498 ILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557
           +L L SN  Y  L   +++     LR +DL++N               +++ +       
Sbjct: 62  LLNLSSNVLYETLDLESLS----TLRTLDLNNNYVQE------LLVGPSIETLH------ 105

Query: 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSH 617
                  + +I+  +     Q +K +        + N+         G    ++ L+L  
Sbjct: 106 -----AANNNIS-RVSCSRGQGKKNI------YLANNKITMLRDLDEGCRSRVQYLDLKL 153

Query: 618 NSLTG-NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           N +   N      +   LE L+L +N +   +    +    L  L+LS N+L
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 41/239 (17%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           S      ++ L+   +T +            +++  L L    +  +    L   S T+ 
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDE----GCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L+L    I  +    +     L+ L L+ N +L                          
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSN-KLA------------------------- 204

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG-VPSWL 179
                 +     +    T I+  +N     +   +     L  FDL GN F  G +  + 
Sbjct: 205 -----FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
                + ++              +                        +L+ L      
Sbjct: 259 SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  138 bits (349), Expect = 2e-34
 Identities = 81/424 (19%), Positives = 152/424 (35%), Gaps = 36/424 (8%)

Query: 103 WSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT 162
             S L+   +   + I               L     + F ++         +     + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 163 TFDLSGNYFQGGVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRG 220
             +L+    +  + ++ F    ++  + +  N +   P  +FQ    L  + LE N++  
Sbjct: 79  LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 136

Query: 221 TIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIK 279
           ++P   F     LT L +S+NNL   I  D F     LQ L LS+N L     S      
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL----- 190

Query: 280 YSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS 339
             +PSL     +Y  ++           +  LD S+N I   +    +     L  L L 
Sbjct: 191 --IPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-VVRGPVNV---ELTILKLQ 240

Query: 340 NNFMTHI-ELHPWMNITTLDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPSICS 395
           +N +T    L  +  +  +DL  N ++       V     + L +SNN+L   +      
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 299

Query: 396 LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS 455
           + +L+ L LS N+L   +      F   L  L+L +NS+   +    +    L++L L+ 
Sbjct: 300 IPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 354

Query: 456 NKLEG----PLPRSLAK-CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           N  +      L R++A+  +     +   +   +   C   S       +L+       +
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 511 CNSN 514
               
Sbjct: 415 EKVQ 418

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  137 bits (347), Expect = 3e-34
 Identities = 69/374 (18%), Positives = 140/374 (37%), Gaps = 47/374 (12%)

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLP-NSLQDVRLEENEIRGTIPNSTFQ-LVNL 232
           + S L        + +     +       +  N+ + V  + + +R  +P +       +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
            +L+L+   +   I    F+    +Q L +  N++             ++P L VL    
Sbjct: 78  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLER 132

Query: 293 CNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
            +++  P G   N+ +L  L +SNN ++ RI         SL +L LS+N +TH++L   
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 191

Query: 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
            ++   ++  N +                           ++    +++ L  S N+++ 
Sbjct: 192 PSLFHANVSYNLLS--------------------------TLAIPIAVEELDASHNSIN- 224

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
            +       + EL  L L++N+L         N   L  +DL+ N+LE  +     K  +
Sbjct: 225 VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531
           LE + +  N +  +   +   +  LK+L L  N     L        F  L  + L HN 
Sbjct: 280 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFDRLENLYLDHNS 335

Query: 532 FTGFLPRRIFPSME 545
               L      +++
Sbjct: 336 IV-TLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  123 bits (311), Expect = 1e-29
 Identities = 89/466 (19%), Positives = 167/466 (35%), Gaps = 46/466 (9%)

Query: 11  DLSFCVLTIEQRTFDLLAS----NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGG 66
           D  F  + I+ +T D+        L    ++    + M  +    L +    +  L+L  
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLND 84

Query: 67  TRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG 125
            +I+       F     +Q L++  N  +  YLP        + + LL+VL +   + + 
Sbjct: 85  LQIE-EIDTYAFAYAHTIQKLYMGFN-AIR-YLP----PHVFQNVPLLTVLVLERNDLS- 136

Query: 126 SIPTSI-GNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSWLFTLP 183
           S+P  I  N  + T ++ ++N+   ++        + L    LS N     V   L   P
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-VDLSLI--P 192

Query: 184 SLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
           SL   ++S N+L+       +P +++++    N I   +         LTIL L  NNL+
Sbjct: 193 SLFHANVSYNLLS----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT 245

Query: 244 GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLR 303
                        L  +DLS N L              +  L+ L  +   +     + +
Sbjct: 246 ---DTAWLLNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVALNLYGQ 298

Query: 304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNR 363
               L +LDLS+N +   + + + P +  L +L L +N +  ++L     +  L L +N 
Sbjct: 299 PIPTLKVLDLSHNHLL-HVER-NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356

Query: 364 IQG-SILVPPPSTKVLLVSNNKLSGKIPPSI-----CSLSSLQYLSLSDNNLSGTIPPCL 417
               S+     +     V +     KI   +     C  S   YL      ++ T     
Sbjct: 357 WDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK 416

Query: 418 GNFSTELITLHLKNNSLEGHIH----DTFANASHLRSLDLNSNKLE 459
              +    +     NS++   H               L+   N+L 
Sbjct: 417 VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (277), Expect = 2e-25
 Identities = 54/320 (16%), Positives = 112/320 (35%), Gaps = 39/320 (12%)

Query: 353 NITTLDLRNNRI---QGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNN 408
           N   +  +N+ +     ++L      ++L +++ ++  +I         ++Q L +  N 
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 110

Query: 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
           +   +PP +      L  L L+ N L       F N   L +L +++N LE     +   
Sbjct: 111 IR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLS 528
              L+ + +  N ++      L  +  L    +  N        S +  P   +  +D S
Sbjct: 170 TTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL------STLAIPIA-VEELDAS 219

Query: 529 HNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRA 588
           HN     +   +   +  +K                  ++T      ++     +     
Sbjct: 220 HNSIN-VVRGPVNVELTILK--------------LQHNNLTDTAWLLNYPGLVEV----- 259

Query: 589 MDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI 648
            D S N     +       + L+ L +S+N L   + +  + +  L+ LDLS N L   +
Sbjct: 260 -DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 316

Query: 649 PEQLLSVTALALLNLSYNRL 668
                    L  L L +N +
Sbjct: 317 ERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (255), Expect = 9e-23
 Identities = 63/356 (17%), Positives = 121/356 (33%), Gaps = 50/356 (14%)

Query: 315 NNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPS 374
              ++ R  +          D    +  +       +     + L N +I          
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKI---------- 55

Query: 375 TKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 433
              +   N+ +  K+P ++  S   ++ L+L+D  +   I      ++  +  L++  N+
Sbjct: 56  ---VTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 110

Query: 434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSL 493
           +       F N   L  L L  N L            KL  +++  N +         + 
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 494 HELKILVLRSNRFYGPLCNSNITF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 552
             L+ L L SNR       +++      +L   ++S+N  +            A++ +D 
Sbjct: 171 TSLQNLQLSSNRL------THVDLSLIPSLFHANVSYNLLS------TLAIPIAVEELD- 217

Query: 553 QGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKV 612
                         SI   ++G       IL          N    +    L N+  L  
Sbjct: 218 ----------ASHNSIN-VVRGPVNVELTIL------KLQHNNLT-DTA-WLLNYPGLVE 258

Query: 613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           ++LS+N L   +   F  M  LE L +S N+L   +      +  L +L+LS+N L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 86/524 (16%), Positives = 162/524 (30%), Gaps = 91/524 (17%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           ++   +  L + F  +  +    F     N+  L++L L   ++S +      N    +T
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLERNDLSSLPRGIFHNTPK-LT 150

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            L +    ++    DD F+   +LQ L L+ N               L  +DL       
Sbjct: 151 TLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR--------------LTHVDL------- 188

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
                         +        + N  +      ++    +   D S N     V   +
Sbjct: 189 ------------SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV 230

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
                L  + L  N L                                    L  +DLS 
Sbjct: 231 N--VELTILKLQHNNLT-DTAWLL------------------------NYPGLVEVDLSY 263

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299
           N L   I +  F K+++L+ L +SNN L++            +P+LKVL  ++ ++    
Sbjct: 264 NELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHNHLLHVE 317

Query: 300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM-NITTLD 358
                 + L  L L +N     I         +L +L LS+N      L     N+    
Sbjct: 318 RNQPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 373

Query: 359 LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT----IP 414
           + +      I            S+     ++   I   S ++ +  +    S T      
Sbjct: 374 VDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSV 433

Query: 415 PCLGNFSTELITLHLKNNS-LEGHIHDTFANASHLRSLDLNSNKLEGPLPRS-LAKCIKL 472
             L ++ T+   + L+ N  LE  +++  A    L +  +   +L   L         + 
Sbjct: 434 QSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY 493

Query: 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNIT 516
            +   G    SD+       L E +   LR  +      ++   
Sbjct: 494 RLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQK 537

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 41/275 (14%), Positives = 90/275 (32%), Gaps = 33/275 (12%)

Query: 396 LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS 455
           +   Q  ++               +      +H+   + + +        ++ + +   +
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60

Query: 456 NKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI 515
           + +       L    ++E++N+    I +         H ++ L +  N         ++
Sbjct: 61  STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY--LPPHV 118

Query: 516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYM-GGAFYDESITVAMQ 573
                 L ++ L  N+ +  LPR IF +   +  +      LE +    F          
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-------- 169

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
                        + +  S NR    +   L    SL   N+S+N L+     +     A
Sbjct: 170 ---------TTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIA 212

Query: 634 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           +E LD S N ++  +   +     L +L L +N L
Sbjct: 213 VEELDASHNSIN-VVRGPVNV--ELTILKLQHNNL 244

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  121 bits (306), Expect = 2e-30
 Identities = 63/309 (20%), Positives = 108/309 (34%), Gaps = 41/309 (13%)

Query: 159 SYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENE 217
              T  DL  N            L  L ++ L  N ++      F     LQ + + +N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANIS 277
           +   IP +     +L  L +  N +   +    FS L+ +  +++  N L +        
Sbjct: 114 LV-EIPPNLPS--SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA- 168

Query: 278 IKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDL 336
             +    L  LR +   +T  P        EL+L    +N+IQ  I   D   +  L  L
Sbjct: 169 --FDGLKLNYLRISEAKLTGIPKDLPETLNELHL---DHNKIQ-AIELEDLLRYSKLYRL 222

Query: 337 DLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSL 396
            L +N +  IE      + TL                  + L + NNKLS ++P  +  L
Sbjct: 223 GLGHNQIRMIENGSLSFLPTL------------------RELHLDNNKLS-RVPAGLPDL 263

Query: 397 SSLQYLSLSDNNLSGTIPP------CLGNFSTELITLHLKNNSLE-GHIH-DTFANASHL 448
             LQ + L  NN++  +          G        + L NN +    +   TF   +  
Sbjct: 264 KLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 449 RSLDLNSNK 457
            ++   + K
Sbjct: 323 LAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  120 bits (303), Expect = 5e-30
 Identities = 61/291 (20%), Positives = 113/291 (38%), Gaps = 26/291 (8%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
           +      + L+ N+I   +    F+ L +L  L L +N +S  I    FS L+KLQ L +
Sbjct: 52  ISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYI 109

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGR 321
           S N L+    +          SL  LR     I + P G       +  +++  N ++  
Sbjct: 110 SKNHLVEIPPNL-------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 322 ISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ---GSILVPPPSTKVL 378
             +  +     L  L +S   +T I       +  L L +N+IQ      L+       L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222

Query: 379 LVSNNKLSGKIPPSICS-LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH 437
            + +N++   I     S L +L+ L L +N LS  +P  L +    L  ++L  N++   
Sbjct: 223 GLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL-KLLQVVYLHTNNITKV 279

Query: 438 IHDTFA------NASHLRSLDLNSNKLE-GPLPRSLAKCIK-LEVVNVGKN 480
             + F         ++   + L +N +    +  +  +C+     +  G  
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  104 bits (261), Expect = 2e-24
 Identities = 61/325 (18%), Positives = 113/325 (34%), Gaps = 59/325 (18%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            +S   T LDL    I     DD   L +L  L L  N               + ++   
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--------------ISKIH-- 94

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
                           +   L +  ++  + NH   ++P ++   S L    +  N  + 
Sbjct: 95  --------------EKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR- 136

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG---PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229
            VP  +F+ L ++  I++  N L         F     L  +R+ E ++   IP    + 
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPKDLPE- 193

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
             L  L L  N +  AI  +   +  KL  L L +N +    + +       LP+L+ L 
Sbjct: 194 -TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELH 247

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSD------SPGWKSLIDLDLSNNFM 343
                ++  P  L + + L ++ L  N I  ++  +D               + L NN +
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 344 THIELHPWM-----NITTLDLRNNR 363
            + E+ P       +   +   N +
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 57/275 (20%), Positives = 92/275 (33%), Gaps = 30/275 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
             L  L  L L    ++ I ++ F    S L KL  L++   ++  I P    +L     
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAF----SPLRKLQKLYISKNHLVEIPPNLPSSL----V 126

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
           +L +   RI+   P  +F  L N+  + +  N  L     +      L+    L+ L I 
Sbjct: 127 ELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLK----LNYLRIS 180

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
               T  IP          E+    N         +   S L    L  N  +      L
Sbjct: 181 EAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 180 FTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-------QLVN 231
             LP+L  + L  N L+  P  L  L   LQ V L  N I   +  + F       +   
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPDLKL-LQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 232 LTILDLSSNNLS-GAIRFDQFSKLKKLQFLDLSNN 265
              + L +N +    ++   F  +     +   N 
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 63/336 (18%), Positives = 107/336 (31%), Gaps = 69/336 (20%)

Query: 374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKN 431
             +V+  S+  L   +P  I        L L +N++S  +     +F     L  L L N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRK--DDFKGLQHLYALVLVN 87

Query: 432 NSLEGHIHD-TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
           N +   IH+  F+    L+ L ++ N L   +P +L     L  + +  N I        
Sbjct: 88  NKIS-KIHEKAFSPLRKLQKLYISKNHLVE-IPPNLPS--SLVELRIHDNRIRKVPKGVF 143

Query: 491 GSLHELKILVLRSNRFYGPLCNSNI---TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM 547
             L  +  + +  N     L NS      F    L  + +S  + TG +P+ +  ++  +
Sbjct: 144 SGLRNMNCIEMGGNP----LENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETLNEL 198

Query: 548 KNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPE-VLGN 606
                                                         N+    I    L  
Sbjct: 199 ------------------------------------------HLDHNKIQ-AIELEDLLR 215

Query: 607 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 666
           +  L  L L HN +      S   +  L  L L  NKL  R+P  L  +  L ++ L  N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 667 RLWGRIPRG--NQFNTFENDSYIGNIHLCGEPLTVR 700
            +  ++              +Y   I L   P+   
Sbjct: 275 NI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 57/351 (16%), Positives = 112/351 (31%), Gaps = 76/351 (21%)

Query: 336 LDLSNNFMTHIELHPWMNITTLDLRNNRI---QGSILVPPPSTKVLLVSNNKLSGKIPP- 391
           +  S+  +  +      + T LDL+NN I   +            L++ NNK+S KI   
Sbjct: 38  VQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEK 96

Query: 392 SICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL 451
           +   L  LQ L +S N+L   IPP     S+ L+ L + +N +       F+   ++  +
Sbjct: 97  AFSPLRKLQKLYISKNHLV-EIPP--NLPSS-LVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 452 DLNSNKL-EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHEL-----KILVLRSNR 505
           ++  N L            +KL  + + +  ++        +L+EL     KI  +    
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212

Query: 506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
                        +  L  + L HN+    +       +  ++                 
Sbjct: 213 LLR----------YSKLYRLGLGHNQIR-MIENGSLSFLPTLRE---------------- 245

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625
                                  +    N+    +P  L + K L+V+ L  N++T  + 
Sbjct: 246 -----------------------LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVG 280

Query: 626 VS-------FENMTALESLDLSFNKLD-GRIPEQLLS-VTALALLNLSYNR 667
           V+                + L  N +    +       VT    +     +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  120 bits (304), Expect = 4e-30
 Identities = 75/335 (22%), Positives = 126/335 (37%), Gaps = 48/335 (14%)

Query: 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS 266
            L+ V+  +  +   +P       +  +LDL +N ++  I+   F  LK L  L L NN 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 267 LLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKS 325
           +   +  A       L  L+ L  +   + E P    +    L  L +  N I  ++ KS
Sbjct: 88  ISKISPGA----FAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKS 139

Query: 326 DSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKL 385
              G   +I ++L  N                 L+++ I+            + +++  +
Sbjct: 140 VFNGLNQMIVVELGTN----------------PLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 445
           +  IP  +    SL  L L  N ++  +          L  L L  NS+    + + AN 
Sbjct: 184 T-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS----DSF--PCWLGSLHELKIL 499
            HLR L LN+NKL   +P  LA    ++VV +  N IS    + F  P +         +
Sbjct: 240 PHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 500 VLRSNRFYGPLCNSNI---TF-PFQALRIIDLSHN 530
            L SN    P+    I   TF        + L + 
Sbjct: 299 SLFSN----PVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (276), Expect = 2e-26
 Identities = 65/325 (20%), Positives = 110/325 (33%), Gaps = 58/325 (17%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L      LDL   +I      D   L NL  L L  N                     +
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--------------------I 88

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
           S +           P +   L +   +  + N    +LP  +     L    +  N    
Sbjct: 89  SKIS----------PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK 135

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG---PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229
            V   +F  L  ++ ++L  N L         FQ    L  +R+ +  I  TIP      
Sbjct: 136 -VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP- 192

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
            +LT L L  N ++  +       L  L  L LS NS+ +  + +      + P L+ L 
Sbjct: 193 -SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELH 246

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSD------SPGWKSLIDLDLSNNFM 343
                + + PG L + + + ++ L NN I   I  +D      +    S   + L +N +
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 344 THIELHPWM-----NITTLDLRNNR 363
            + E+ P           + L N +
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 58/275 (21%), Positives = 93/275 (33%), Gaps = 29/275 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
            +L  L  L L    ++ I    F    + L KL  L+L    +  +       L     
Sbjct: 73  KNLKNLHTLILINNKISKISPGAF----APLVKLERLYLSKNQLKELPEKMPKTL----Q 124

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
           +L +    I       +F  L  + ++ L  N   +  +         + +  LS + I 
Sbjct: 125 ELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA----FQGMKKLSYIRIA 179

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
             N T +IP   G     TE+    N  T      + GL+ L    LS N         L
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 180 FTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-------QLVN 231
              P L  + L+ N L   P  L      +Q V L  N I   I ++ F       +  +
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKY-IQVVYLHNNNIS-AIGSNDFCPPGYNTKKAS 294

Query: 232 LTILDLSSNNLS-GAIRFDQFSKLKKLQFLDLSNN 265
            + + L SN +    I+   F  +     + L N 
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 62/398 (15%), Positives = 117/398 (29%), Gaps = 118/398 (29%)

Query: 288 LRFAYC---NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMT 344
           LR   C    + + P  L    +  LLDL NN+I   I   D    K+L  L L NN ++
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS 89

Query: 345 HIE---LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQY 401
            I      P + +  L L  N+++                      ++P  +    +LQ 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK----------------------ELPEKM--PKTLQE 125

Query: 402 LSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSL-EGHIHD-TFANASHLRSLDLNSNK 457
           L + +N ++  +      F+   ++I + L  N L    I +  F     L  + +    
Sbjct: 126 LRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 458 LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF 517
           +            +L                    L   KI  + +    G         
Sbjct: 183 ITTIPQGLPPSLTELH-------------------LDGNKITKVDAASLKG--------- 214

Query: 518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDF 577
               L  + LS N  +  +      +   +                              
Sbjct: 215 -LNNLAKLGLSFNSISA-VDNGSLANTPHL------------------------------ 242

Query: 578 QLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG------NIPVSFENM 631
                    R +  + N+   ++P  L + K ++V+ L +N+++         P      
Sbjct: 243 ---------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 632 TALESLDLSFNKL-DGRIPEQLLS-VTALALLNLSYNR 667
            +   + L  N +    I       V   A + L   +
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 4e-19
 Identities = 62/299 (20%), Positives = 108/299 (36%), Gaps = 59/299 (19%)

Query: 374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKN 431
             +V+  S+  L  K+P  +        L L +N ++  I    G+F     L TL L N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKIT-EIKD--GDFKNLKNLHTLILIN 85

Query: 432 NSLEGHIHD-TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
           N +   I    FA    L  L L+ N+L+  LP  + K   L+ + V +N I+       
Sbjct: 86  NKIS-KISPGAFAPLVKLERLYLSKNQLKE-LPEKMPK--TLQELRVHENEITKVRKSVF 141

Query: 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
             L+++ ++ L +N        +      + L  I ++    T  +P+ + PS       
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPS------- 193

Query: 551 DEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPE-VLGNFKS 609
                                       L ++           N+   ++    L    +
Sbjct: 194 ----------------------------LTEL-------HLDGNKIT-KVDAASLKGLNN 217

Query: 610 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           L  L LS NS++     S  N   L  L L+ NKL  ++P  L     + ++ L  N +
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           D   N+          N K+L  L L +N ++   P +F  +  LE L LS N+L   +P
Sbjct: 58  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP 116

Query: 650 EQLLSVTALALLNLSYNRLWGRIPRG 675
           E++     L  L +  N +  ++ + 
Sbjct: 117 EKMPK--TLQELRVHENEI-TKVRKS 139

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL-DGRI 648
             S+N+   E+PE +   K+L+ L +  N +T      F  +  +  ++L  N L    I
Sbjct: 106 YLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162

Query: 649 PEQLLS-VTALALLNLSYNRLWGRIPRG 675
                  +  L+ + ++   +   IP+G
Sbjct: 163 ENGAFQGMKKLSYIRIADTNI-TTIPQG 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (303), Expect = 4e-29
 Identities = 70/383 (18%), Positives = 136/383 (35%), Gaps = 42/383 (10%)

Query: 155 VSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLE 214
              L+ LT+ D   +       + +  L  L  +  + N +   +DL Q  N L  +  +
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITT-LDLSQNTN-LTYLACD 93

Query: 215 ENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSA 274
            N++   +  +   L  LT L+  +N L+        S+   L +L+ + N+L     S 
Sbjct: 94  SNKLT-NLDVT--PLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTEIDVS- 145

Query: 275 NISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLI 334
                     L  L                ++ L  LD S N+I    ++ D    K L 
Sbjct: 146 ------HNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSFNKI----TELDVSQNKLLN 194

Query: 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC 394
            L+   N +T ++L+  + +T LD  +N++    + P         S N L+ ++  S  
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT-ELDVS-- 251

Query: 395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLN 454
           +LS L  L     +L   I       +T+LI    +       +     + + L  LD  
Sbjct: 252 TLSKLTTLHCIQTDLL-EIDL---THNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQ 305

Query: 455 SNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN 514
           +  +   L   L++  KL  + +    ++      +    +LK L   +      + + +
Sbjct: 306 AAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH----IQDFS 355

Query: 515 ITFPFQALRIIDLSHNEFTGFLP 537
                 AL     +  +      
Sbjct: 356 SVGKIPALNNNFEAEGQTITMPK 378

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  117 bits (294), Expect = 6e-28
 Identities = 79/408 (19%), Positives = 139/408 (34%), Gaps = 47/408 (11%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
             L  L+ L    ++++ +     L   + +T L      I      D+ +  NL  L  
Sbjct: 39  EQLATLTSLDCHNSSITDMTGIEKL---TGLTKLICTSNNITT---LDLSQNTNLTYLAC 92

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
           + N +LT        +  +  L  L+ L+      T      +      T +  A N  T
Sbjct: 93  DSN-KLT--------NLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT 140

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
            ++   VS  + LT  D   N  +      +     L ++D S N +   +D+ Q    L
Sbjct: 141 -EID--VSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKL-L 193

Query: 209 QDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
             +  + N I   +  +  Q + LT LD SSN L+        + L +L + D S N L 
Sbjct: 194 NRLNCDTNNIT-KLDLN--QNIQLTFLDCSSNKLTEI----DVTPLTQLTYFDCSVNPLT 246

Query: 269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP 328
               S       +L  L  L     ++ E    L ++ +L        R    I + D  
Sbjct: 247 ELDVS-------TLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRK---IKELDVT 294

Query: 329 GWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGK 388
               L  LD     +T ++L     +  L L N  +    +      K L   N  +   
Sbjct: 295 HNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD- 353

Query: 389 IPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG 436
              S+  + +L     ++     T+P      ++  I +        G
Sbjct: 354 -FSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (265), Expect = 3e-24
 Identities = 77/483 (15%), Positives = 139/483 (28%), Gaps = 83/483 (17%)

Query: 224 NSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLP 283
           N  F   N      ++  +          +L  L  LD  N+S+   T          L 
Sbjct: 12  NDWFPDDNFASEVAAAFEMQA-TDTISEEQLATLTSLDCHNSSITDMTGIEK------LT 64

Query: 284 SLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFM 343
            L  L     NIT              LDLS N               +L  L   +N +
Sbjct: 65  GLTKLICTSNNITT-------------LDLSQN--------------TNLTYLACDSNKL 97

Query: 344 THIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLS 403
           T++++ P   +T L+   N++    +   P    L  + N L+      +   + L  L 
Sbjct: 98  TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELD 154

Query: 404 LSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
              N    T         T+L TL    N +        +    L  L+ ++N +     
Sbjct: 155 CHLNKKI-TKLDVTPQ--TQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNITKL-- 206

Query: 464 RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR 523
             L + I+L  ++   N ++      +  L +L       N                 L 
Sbjct: 207 -DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL-----TELDVSTLSKLT 257

Query: 524 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL 583
            +     +    +       +   +    +              I      H+ QL  + 
Sbjct: 258 TLHCIQTDLLE-IDLTHNTQLIYFQAEGCR-------------KIKELDVTHNTQLYLL- 302

Query: 584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
                 D        E+   L     L  L L++  LT  + VS  + T L+SL      
Sbjct: 303 ------DCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAH 350

Query: 644 LDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSN 703
           +       +  + AL     +  +           N+         +   G P+ +   +
Sbjct: 351 IQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD 408

Query: 704 DGL 706
            G+
Sbjct: 409 GGV 411

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 75/422 (17%), Positives = 132/422 (31%), Gaps = 65/422 (15%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
           S  + LT+L      LT      +L  + LTKL+ L+     ++ +       L    T 
Sbjct: 82  SQNTNLTYLACDSNKLT------NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLL----TY 131

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L+     +      D+     L  L  +LN ++T           +     L+ LD  F 
Sbjct: 132 LNCARNTLT---EIDVSHNTQLTELDCHLNKKIT--------KLDVTPQTQLTTLDCSFN 180

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
             T      +        +   +N+ T +L   ++    LT  D S N     +   +  
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTP 231

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           L  L   D S N L   +D+  L   L  +   + ++   I  +      L         
Sbjct: 232 LTQLTYFDCSVNPLT-ELDVSTLSK-LTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCR 286

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
               I+    +   +L  LD     +     S         P L  L      +TE    
Sbjct: 287 K---IKELDVTHNTQLYLLDCQAAGITELDLS-------QNPKLVYLYLNNTELTELD-- 334

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361
           + ++ +L  L   N  IQ     S      +L +   +                T+    
Sbjct: 335 VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEG-----------QTITMP--K 378

Query: 362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS 421
             +  + L    S  +L    N ++  I P    +      +++  NLS   P     F+
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNPAVTYTFT 436

Query: 422 TE 423
           +E
Sbjct: 437 SE 438

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 35/243 (14%), Positives = 80/243 (32%), Gaps = 30/243 (12%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           ++   +LT LD S   LT      D+  + LT+L+        ++ +   +L  L    T
Sbjct: 208 LNQNIQLTFLDCSSNKLT----EIDV--TPLTQLTYFDCSVNPLTELDVSTLSKL----T 257

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L    T +      D+     L         ++            +     L +LD   
Sbjct: 258 TLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIK--------ELDVTHNTQLYLLDCQA 306

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
              T  +   +    +   +   +   T +L   VS  + L +      + Q    S + 
Sbjct: 307 AGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS-VG 358

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
            +P+L +   ++      +    L N+   + +  + +         +  +  + D ++N
Sbjct: 359 KIPALNNNFEAEGQTIT-MPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 241 NLS 243
            ++
Sbjct: 418 TIT 420

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (289), Expect = 4e-28
 Identities = 64/387 (16%), Positives = 112/387 (28%), Gaps = 82/387 (21%)

Query: 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ 172
              L              +    R         H   +  +     +       +G   +
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRALK 69

Query: 173 GGVPSWL--FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
                 L   T P  ++++L    L                           P+  F+L 
Sbjct: 70  A-TADLLEDATQPGRVALELRSVPLP------------------------QFPDQAFRLS 104

Query: 231 NLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
           +L  + + +  L       D   +   L+ L L+ N L +  +S  I+   SL  L+ L 
Sbjct: 105 HLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLRALPAS--IA---SLNRLRELS 156

Query: 290 FAYCN-ITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI-- 346
              C  +TE P      E L   D S           +  G  +L  L L    +  +  
Sbjct: 157 IRACPELTELP------EPLASTDASG----------EHQGLVNLQSLRLEWTGIRSLPA 200

Query: 347 ELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSD 406
            +    N+ +L +RN+ +                        + P+I  L  L+ L L  
Sbjct: 201 SIANLQNLKSLKIRNSPLS----------------------ALGPAIHHLPKLEELDLRG 238

Query: 407 NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL 466
                  PP  G     L  L LK+ S    +       + L  LDL        LP  +
Sbjct: 239 CTALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 467 AKCIKLEVVNVGKNMISDSFPCWLGSL 493
           A+     ++ V  ++ +        + 
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (289), Expect = 4e-28
 Identities = 51/307 (16%), Positives = 103/307 (33%), Gaps = 40/307 (13%)

Query: 254 LKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDL 313
               + L    ++ L             L   +    A  N         NS    +   
Sbjct: 11  SSGRENLYFQGSTALR-------PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 314 SNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI--ELHPWMNITTLDLRNNRIQGSILVP 371
           +   ++      +       + L+L +  +     +     ++  + +    +     +P
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME---LP 120

Query: 372 P-----PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS----- 421
                    + L ++ N L   +P SI SL+ L+ LS+        +P  L +       
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 422 ---TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG 478
                L +L L+   +   +  + AN  +L+SL + ++ L   L  ++    KLE +++ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237

Query: 479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF-----QALRIIDLSHNEFT 533
                 ++P   G    LK L+L+        C++ +T P        L  +DL      
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKD-------CSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 534 GFLPRRI 540
             LP  I
Sbjct: 291 SRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (263), Expect = 1e-24
 Identities = 61/397 (15%), Positives = 109/397 (27%), Gaps = 104/397 (26%)

Query: 282 LPSLKVLRFAYCN-ITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
               + L F     +  +   L   +  Y  D +        S        +      + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTG 65

Query: 341 NFMTH----IELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSL 396
             +      +E         L+LR+  +                       + P     L
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP----------------------QFPDQAFRL 103

Query: 397 SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
           S LQ++++    L   +P  +  F   L TL L  N L   +  + A+ + LR L + + 
Sbjct: 104 SHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 457 KLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNIT 516
                LP  LA                         L  L+ L L              +
Sbjct: 161 PELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGI--------RS 197

Query: 517 FP-----FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVA 571
            P      Q L+ + + ++  +  L     P++  +        LE +            
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LG----PAIHHLPK------LEEL------------ 234

Query: 572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 631
                             D          P + G    LK L L   S    +P+    +
Sbjct: 235 ------------------DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 632 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           T LE LDL       R+P  +  + A  ++ +  +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 2e-23
 Identities = 56/422 (13%), Positives = 105/422 (24%), Gaps = 119/422 (28%)

Query: 56  SSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSV 115
           SS   +L   G+     + D + +         N                     +   +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----------RQANSNNPQI 60

Query: 116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
                     +    + + T                             +L         
Sbjct: 61  ETRT-GRALKATADLLEDAT----------------------QPGRVALELRSVPLP-QF 96

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTIL 235
           P   F L  L  + +    L                          +P++  Q   L  L
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLM------------------------ELPDTMQQFAGLETL 132

Query: 236 DLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNSLL-----SFTSSANISIKYSLPSLKVLR 289
            L+ N L          + L +L+ L +     L        S+        L +L+ LR
Sbjct: 133 TLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI--E 347
             +  I   P        +  L                   ++L  L + N+ ++ +   
Sbjct: 190 LEWTGIRSLP------ASIANL-------------------QNLKSLKIRNSPLSALGPA 224

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
           +H    +  LDLR                        L    PP     + L+ L L D 
Sbjct: 225 IHHLPKLEELDLRG--------------------CTALR-NYPPIFGGRAPLKRLILKDC 263

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN---KLEGPLPR 464
           +   T+P  +    T+L  L L+       +    A       + +  +   +L+   P 
Sbjct: 264 SNLLTLPLDIHRL-TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 465 SL 466
           + 
Sbjct: 323 AR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.6 bits (236), Expect = 3e-21
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 31/280 (11%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSST-M 59
           +S   +  + D +       Q       +N     +       +       L + +    
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQ-------ANSNNPQIETRTGRALKAT-ADLLEDATQPGR 83

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
             L+L    +   FPD  FRL +LQ + ++  + L   LP +     +++   L  L + 
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTID-AAGLM-ELPDT-----MQQFAGLETLTLA 135

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLP---------HHVSGLSYLTTFDLSGNY 170
                 ++P SI +L R  E++  +     +LP             GL  L +  L    
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 171 FQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229
            +  +P+ +  L +L S+ +  + L+     +  LP  L+++ L         P      
Sbjct: 195 IR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK-LEELDLRGCTALRNYPPIFGGR 252

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLS 269
             L  L L   +    +      +L +L+ LDL     LS
Sbjct: 253 APLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLS 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.1 bits (232), Expect = 9e-21
 Identities = 61/349 (17%), Positives = 104/349 (29%), Gaps = 41/349 (11%)

Query: 3   HLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
           H S   +L                    L++    +    + +          S+     
Sbjct: 10  HSSGRENLYFQGSTALRP------YHDVLSQWQRHYNA--DRNRWHSAWRQANSNNPQIE 61

Query: 63  DLGGTRIKGNFPDDIFRLPNLQILFLNL-NSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
              G  +K    D +        + L L +  L    P          L  L  + I   
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQ-----AFRLSHLQHMTIDAA 114

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
                +P ++        +  A N     LP  ++ L+ L    +            L  
Sbjct: 115 GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC-------PELTE 165

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           LP  L+        +   +   L N LQ +RLE   IR ++P S   L NL  L + ++ 
Sbjct: 166 LPEPLAS------TDASGEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN-ITEFPG 300
           LS          L KL+ LDL   + L                LK L    C+ +   P 
Sbjct: 218 LSAL--GPAIHHLPKLEELDLRGCTALR-NYPPIFG---GRAPLKRLILKDCSNLLTLPL 271

Query: 301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
            +    +L  LDL       R+    +    +   + +  +    ++ H
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 34/240 (14%), Positives = 63/240 (26%), Gaps = 59/240 (24%)

Query: 439 HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKI 498
           H    ++S   +L    +    P    L++  +    +  +            + +  +I
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQI 60

Query: 499 LVLRSNRFYG-PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557
                           + T P      ++L         P +               RL 
Sbjct: 61  ETRTGRALKATADLLEDATQP--GRVALELRSVPLP-QFPDQA-------------FRLS 104

Query: 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSH 617
                                LQ +                E+P+ +  F  L+ L L+ 
Sbjct: 105 --------------------HLQHM-------TIDAAGLM-ELPDTMQQFAGLETLTLAR 136

Query: 618 NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA---------LALLNLSYNRL 668
           N L   +P S  ++  L  L +        +PE L S  A         L  L L +  +
Sbjct: 137 NPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLAS--NLTKLSLLHLGATNMSLIKPFSLLNLSST 58
              L  L  L L +  +        L AS  NL  L  L +  + +S +   ++ +L   
Sbjct: 179 HQGLVNLQSLRLEWTGIR------SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPK- 230

Query: 59  MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDI 118
           + +LDL G     N+P        L+ L L   S L   LP       +  L  L  LD+
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLD-----IHRLTQLEKLDL 284

Query: 119 GFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHH 154
             C     +P+ I  L     I     H   QL  H
Sbjct: 285 RGCVNLSRLPSLIAQLPANCII-LVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           +        + P+       L+ + +    L   +P + +    LE+L L+ N L   +P
Sbjct: 87  ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 650 EQLLSVTALALLNLSYNRLWGRIP 673
             + S+  L  L++        +P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 2e-27
 Identities = 54/323 (16%), Positives = 100/323 (30%), Gaps = 65/323 (20%)

Query: 231 NLTILDLSSNNLS---GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV 287
              +L++  + L+     +          +  L + +N+L S  +          P L+ 
Sbjct: 41  GNAVLNVGESGLTTLPDCL-------PAHITTLVIPDNNLTSLPAL--------PPELRT 85

Query: 288 LRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
           L  +   +T  P       EL +       +    S         L  L +  N +T + 
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTSLP 137

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSL----------- 396
           + P   +  L + +N++  S+   P     L   NN+L+  +P     L           
Sbjct: 138 VLP-PGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPMLPSGLQELSVSDNQLA 194

Query: 397 ------SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
                 S L  L   +N L+ ++P         L  L +  N L           S L+ 
Sbjct: 195 SLPTLPSELYKLWAYNNRLT-SLPALPSG----LKELIVSGNRLT----SLPVLPSELKE 245

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           L ++ N+L   LP   +  + L V     N ++   P  L  L     + L  N      
Sbjct: 246 LMVSGNRLTS-LPMLPSGLLSLSVYR---NQLT-RLPESLIHLSSETTVNLEGNPL---- 296

Query: 511 CNSNITFPFQALRIIDLSHNEFT 533
            +       + +           
Sbjct: 297 -SERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 4e-26
 Identities = 70/409 (17%), Positives = 132/409 (32%), Gaps = 64/409 (15%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRG 220
               ++  +     +P  L     + ++ +  N L     L  LP  L+ + +  N++  
Sbjct: 42  NAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLT---SLPALPPELRTLEVSGNQLT- 94

Query: 221 TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
           ++P     L+ L+I      +L         +    L  L +  N L S           
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTSLPVL------- 139

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
             P L+ L  +   +   P        L  L   NN++      S       L +L +S+
Sbjct: 140 -PPGLQELSVSDNQLASLPALPSE---LCKLWAYNNQLT-----SLPMLPSGLQELSVSD 190

Query: 341 NFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSL---- 396
           N +  +   P   +  L   NNR+  S+   P   K L+VS N+L+  +P     L    
Sbjct: 191 NQLASLPTLPS-ELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LPVLPSELKELM 247

Query: 397 -------------SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA 443
                        S L  LS+  N L+  +P  L +  +   T++L+ N L      T  
Sbjct: 248 VSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHL-SSETTVNLEGNPLSER---TLQ 302

Query: 444 NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503
               + S    S  +       +   +           +  +   WL    E +      
Sbjct: 303 ALREITSAPGYSGPI-------IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 504 NRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 552
              +G   N++  F     R+ +  +         +I   +  +   + 
Sbjct: 356 WHMFGQEDNAD-AFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (250), Expect = 4e-22
 Identities = 64/363 (17%), Positives = 120/363 (33%), Gaps = 89/363 (24%)

Query: 331 KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP 390
                L++  + +T +      +ITTL + +N +  S+   PP  + L VS N+L+  +P
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT-SLP 97

Query: 391 PSICSLSSLQYLSLSDNNLSG----------------TIPPCLGNFSTELITLHLKNNSL 434
                L  L   S    +L                  ++P         L  L + +N L
Sbjct: 98  VLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG----LQELSVSDNQL 153

Query: 435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLH 494
              +    +    L  L   +N+L   LP   +    L+ ++V  N ++ S P     L+
Sbjct: 154 A-SLPALPSE---LCKLWAYNNQLTS-LPMLPSG---LQELSVSDNQLA-SLPTLPSELY 204

Query: 495 ELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG 554
           +L     R                   L+ + +S N  T  LP                 
Sbjct: 205 KLWAYNNRLTSLPALPSG---------LKELIVSGNRLTS-LP----------------- 237

Query: 555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLN 614
                         +        +L+++         S NR    +P +      L  L+
Sbjct: 238 -----------VLPS--------ELKEL-------MVSGNRL-TSLPMLPSG---LLSLS 267

Query: 615 LSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674
           +  N LT  +P S  ++++  +++L  N L  R  + L  +T+    +    R       
Sbjct: 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

Query: 675 GNQ 677
             +
Sbjct: 327 APR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 67/358 (18%), Positives = 112/358 (31%), Gaps = 58/358 (16%)

Query: 55  LSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS 114
           L++    L++G + +    PD +    ++  L +  N  LT  LP             L 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN-NLT-SLPA--------LPPELR 84

Query: 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGG 174
            L++     T S+P     L   +  +    H              L    + GN     
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTS- 135

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI 234
           +P      P L  + +S N L     L  LP+ L  +    N++  ++P        L  
Sbjct: 136 LPV---LPPGLQELSVSDNQLA---SLPALPSELCKLWAYNNQLT-SLPML---PSGLQE 185

Query: 235 LDLSSNNLSGAIRFDQFSK-LKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
           L +S N L+             +L  L   NN L         S+      LK L  +  
Sbjct: 186 LSVSDNQLA------SLPTLPSELYKLWAYNNRL--------TSLPALPSGLKELIVSGN 231

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI--ELHPW 351
            +T  P        L  L +S NR+    S    P    L+ L +  N +T +   L   
Sbjct: 232 RLTSLPVLPSE---LKELMVSGNRLT---SLPMLPS--GLLSLSVYRNQLTRLPESLIHL 283

Query: 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
            + TT++L  N +    L            +  +  +   +  S              
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.8 bits (233), Expect = 6e-20
 Identities = 61/348 (17%), Positives = 107/348 (30%), Gaps = 61/348 (17%)

Query: 4   LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLD 63
            +    L++    LT       L       ++ L +   N++ + P     L +    L+
Sbjct: 39  NNGNAVLNVGESGLT------TLPDCLPAHITTLVIPDNNLTSL-PALPPELRT----LE 87

Query: 64  LGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNF 123
           + G ++  + P     L  L I    L       LP             L  L I     
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTH-----LP--------ALPSGLCKLWIFGNQL 133

Query: 124 TGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLP 183
           T S+P     L    E++ + N     LP   +  S L       N     +P       
Sbjct: 134 T-SLPVLPPGL---QELSVSDNQLA-SLP---ALPSELCKLWAYNNQLT-SLPM---LPS 181

Query: 184 SLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS 243
            L  + +S N L     L  LP+ L  +    N +  ++P        L  L +S N L+
Sbjct: 182 GLQELSVSDNQLA---SLPTLPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT 234

Query: 244 GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLR 303
                       +L+ L +S N L         S+      L  L      +T  P  L 
Sbjct: 235 -----SLPVLPSELKELMVSGNRL--------TSLPMLPSGLLSLSVYRNQLTRLPESLI 281

Query: 304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
           +      ++L  N     +S+      + +      +  +   ++   
Sbjct: 282 HLSSETTVNLEGN----PLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 6e-17
 Identities = 71/364 (19%), Positives = 117/364 (32%), Gaps = 51/364 (14%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
           +   +L  L++S   LT    +  +L   L +LS+     T         L  L S +  
Sbjct: 78  ALPPELRTLEVSGNQLT----SLPVLPPGLLELSIFSNPLT--------HLPALPSGLCK 125

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L + G ++  + P      P LQ L ++ N QL   LP             L  L     
Sbjct: 126 LWIFGNQLT-SLPVLP---PGLQELSVSDN-QLAS-LPA--------LPSELCKLWAYNN 171

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
             T S+P     L    E++ + N     LP   S L  L  ++                
Sbjct: 172 QLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA-------L 219

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
              L  + +S N L     L  LP+ L+++ +  N +  ++P        L  L +  N 
Sbjct: 220 PSGLKELIVSGNRLT---SLPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQ 272

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           L+  +  +    L     ++L  N L   T  A   I  +      +          P  
Sbjct: 273 LT-RLP-ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI-ELHPWMNITTLDLR 360
            R         L   R +G  + +D   W      D ++ F   +  L    N       
Sbjct: 331 TRALHLAAADWLVPAR-EGEPAPADR--WHMFGQEDNADAFSLFLDRLSETENFIKDAGF 387

Query: 361 NNRI 364
             +I
Sbjct: 388 KAQI 391

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 60/277 (21%)

Query: 393 ICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452
            C  +    L++ ++ L+ T+P CL      + TL + +N+L   +         LR+L+
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LRTLE 87

Query: 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
           ++ N+L   LP      ++L + +     +             L  L +  N+       
Sbjct: 88  VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL------ 133

Query: 513 SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAFYDESITVA 571
           +++      L+ + +S N+        +      +  +     +L  +         +  
Sbjct: 134 TSLPVLPPGLQELSVSDNQLA-----SLPALPSELCKLWAYNNQLTSL-----PMLPS-- 181

Query: 572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 631
                  LQ++         S N+    +P +      L   N    SL           
Sbjct: 182 ------GLQEL-------SVSDNQLA-SLPTLPSELYKLWAYNNRLTSLP-------ALP 220

Query: 632 TALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           + L+ L +S N+L   +P      + L  L +S NRL
Sbjct: 221 SGLKELIVSGNRL-TSLPVLP---SELKELMVSGNRL 253

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 1e-26
 Identities = 74/383 (19%), Positives = 133/383 (34%), Gaps = 44/383 (11%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
           LP  +  V L  N I   +  ++F  L +L  L +        IR + F  L  L  L L
Sbjct: 28  LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF---PGFLRNSEELYLLDLSNNRIQ 319
             N  L   + A       L +L+VL    CN+        F +    L +L L +N I+
Sbjct: 87  DYNQFLQLETGAFN----GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPW-----MNITTLDLRNNRIQG-------- 366
                S     +    LDL+ N +  I           + T L L +  +Q         
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 367 ---SILVPPPSTKVLLVSNNKLSGKIPPSICSL---SSLQYLSLSDNNLSGTIPP----- 415
                     S   L +S N     +          + +Q L LS++   G+        
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 416 ------CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469
                   G  ++ + T  L  + +   +   F++ + L  L L  N++      +    
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF-PFQALRIIDLS 528
             L  +N+ +N +         +L +L++L L  N         + +F     L+ + L 
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR---ALGDQSFLGLPNLKELALD 379

Query: 529 HNEFTGFLPRRIFPSMEAMKNVD 551
            N+    +P  IF  + +++ + 
Sbjct: 380 TNQLK-SVPDGIFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (279), Expect = 5e-26
 Identities = 78/425 (18%), Positives = 136/425 (32%), Gaps = 86/425 (20%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            L + +  +DL    I         RL +LQ L +         +  +            
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNN------------ 73

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
                                       F              GLS L    L  N F  
Sbjct: 74  ---------------------------TFR-------------GLSSLIILKLDYNQFL- 92

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG---PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ- 228
            + +  F  L +L  + L++  L+G     + F+   SL+ + L +N I+   P S F  
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKL--KKLQFLDLSNNSLLSFTSSANISIKYS----L 282
           +    +LDL+ N +  +I  +       K    L LS+ +L           K       
Sbjct: 153 MRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 283 PSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
            S+  L  +     E     F        +  L  +      S      +K   +     
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 341 NFMTHIELHPWMNITTLDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPSIC-SL 396
              +         + T DL  ++I     S+       + L ++ N+++ KI  +    L
Sbjct: 272 LEAS--------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGL 322

Query: 397 SSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLN 454
           + L  L+LS N L  +I      F    +L  L L  N +      +F    +L+ L L+
Sbjct: 323 THLLKLNLSQNFLG-SIDS--RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379

Query: 455 SNKLE 459
           +N+L+
Sbjct: 380 TNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (262), Expect = 6e-24
 Identities = 74/326 (22%), Positives = 119/326 (36%), Gaps = 31/326 (9%)

Query: 2   SHLSKLTHLDLSFCVLT---IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSST 58
           + L+ L  L L+ C L    +    F      LT L +L L   N+  I+P S       
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFK----PLTSLEMLVLRDNNIKKIQPASFFLNMRR 155

Query: 59  MTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSP----LRELDLL 113
              LDL   ++K +  ++            L L+S     + +            +   +
Sbjct: 156 FHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
           + LD+    F  S+     +    T+I    +       +  S   +    D     F+G
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVN 231
              S + T       DLSK+ +      +F     L+ + L +NEI   I ++ F  L +
Sbjct: 272 LEASGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFA 291
           L  L+LS N L  +I    F  L KL+ LDLS N + +    +       LP+LK L   
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALD 379

Query: 292 YCNITEFP-GFLRNSEELYLLDLSNN 316
              +   P G       L  + L  N
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (252), Expect = 1e-22
 Identities = 71/378 (18%), Positives = 129/378 (34%), Gaps = 40/378 (10%)

Query: 2   SHLSKLTHLDLSFCVL--TIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
           S L  L  L +        I   TF      L+ L +L L       ++  +   L++ +
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFR----GLSSLIILKLDYNQFLQLETGAFNGLAN-L 105

Query: 60  TDLDLGGTRIKGNF-PDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSS--PLRELDL--- 112
             L L    + G     + F+ L +L++L L  N  +    P S + +      LDL   
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 113 -LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF 171
            +  +             ++  L+  T           +   +    + +TT DLSGN F
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 172 QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF---Q 228
           +  +    F   +   I       +  +       + +D             N TF   +
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD-----------PDNFTFKGLE 273

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
              +   DLS + +  A+    FS    L+ L L+ N +     +A     + L  L  L
Sbjct: 274 ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKL 328

Query: 289 RFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
             +   +         N ++L +LDLS N I+  +      G  +L +L L  N +  + 
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 348 ---LHPWMNITTLDLRNN 362
                   ++  + L  N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYNR 667
            +  ++LS NS+      SF  +  L+ L +        I       +++L +L L YN+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 668 L 668
            
Sbjct: 91  F 91

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (278), Expect = 5e-26
 Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 15/231 (6%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR 219
               +L  N  Q    +    L  L  + LS+N +    I  F    +L  + L +N + 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 220 GTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISI 278
            TIPN  F  L  L  L L +N +  +I    F+++  L+ LDL     LS+ S      
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE- 182

Query: 279 KYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDL 338
              L +L+ L  A CN+ E P       +L  LDLS N +   I      G   L  L +
Sbjct: 183 --GLSNLRYLNLAMCNLREIPNL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWM 238

Query: 339 SNNFMTHIE---LHPWMNITTLDLRNNR---IQGSILVPPPSTKVLLVSNN 383
             + +  IE        ++  ++L +N    +   +  P    + + + +N
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (264), Expect = 3e-24
 Identities = 52/251 (20%), Positives = 99/251 (39%), Gaps = 18/251 (7%)

Query: 120 FCNFTG--SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177
            C       +P  I   T    +    N       +    L +L    LS N+ +     
Sbjct: 49  ICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 178 WLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTIL 235
               L +L +++L  N L   P   F   + L+++ L  N I  +IP+  F  + +L  L
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 236 DLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNI 295
           DL        I    F  L  L++L+L+  +L    +         L  L  L  +  ++
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP------LIKLDELDLSGNHL 219

Query: 296 TEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPW 351
           +    G  +    L  L +  ++IQ  I ++     +SL++++L++N +T +      P 
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 352 MNITTLDLRNN 362
            ++  + L +N
Sbjct: 279 HHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 43/265 (16%)

Query: 7   LTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLG 65
              L+L    +  I+  +F     +L  L +L L   ++  I+  +   L++ +  L+L 
Sbjct: 66  TRLLNLHENQIQIIKVNSF----KHLRHLEILQLSRNHIRTIEIGAFNGLAN-LNTLELF 120

Query: 66  GTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFT 124
             R+    P+  F  L  L+ L+L  N  +   +P   ++     +  L  LD+G     
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNN-PIE-SIPSYAFNR----IPSLRRLDLGELK-- 171

Query: 125 GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPS 184
                    L+  +E AF              GLS L   +L+    +  +P+    L  
Sbjct: 172 --------RLSYISEGAFE-------------GLSNLRYLNLAMCNLR-EIPNLTP-LIK 208

Query: 185 LLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNL 242
           L  +DLS N L+      FQ    LQ + + +++I+  I  + F  L +L  ++L+ NNL
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

Query: 243 SGAIRFDQFSKLKKLQFLDLSNNSL 267
           +  +  D F+ L  L+ + L +N  
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.9 bits (231), Expect = 4e-20
 Identities = 57/292 (19%), Positives = 92/292 (31%), Gaps = 67/292 (22%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            +S+    L+L   +I+    +    L +L+IL L+ N                      
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN---------------------- 98

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
                              ++      AF             +GL+ L T +L  N    
Sbjct: 99  -------------------HIRTIEIGAF-------------NGLANLNTLELFDNRLTT 126

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRL-EENEIRGTIPNSTFQ-LV 230
                   L  L  + L  N +   P   F    SL+ + L E   +   I    F+ L 
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLS 185

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           NL  L+L+  NL         + L KL  LDLS N L +    +       L  L+ L  
Sbjct: 186 NLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSF----QGLMHLQKLWM 238

Query: 291 AYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
               I         N + L  ++L++N +   +          L  + L +N
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 1e-18
 Identities = 62/313 (19%), Positives = 109/313 (34%), Gaps = 63/313 (20%)

Query: 391 PSICS-LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
           PS+CS  +    +     NL   +P      ST    L+L  N ++    ++F +  HL 
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
            L L+ N +      +      L  + +  N ++         L +LK L LR+N     
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI--- 148

Query: 510 LCNSNI---TF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
               +I    F    +LR +DL   +   ++    F  +  +                  
Sbjct: 149 ---ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL------------------ 187

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625
                                R ++ +      EIP  L     L  L+LS N L+   P
Sbjct: 188 ---------------------RYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRP 224

Query: 626 VSFENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNLSYNRLWGRIPRGNQFNTFEND 684
            SF+ +  L+ L +  +++   I       + +L  +NL++N L   +P       F   
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL-TLLPHD----LFTPL 278

Query: 685 SYIGNIHLCGEPL 697
            ++  IHL   P 
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 61/296 (20%), Positives = 95/296 (32%), Gaps = 77/296 (26%)

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSG 411
           N   L+L  N+IQ                       I  +    L  L+ L LS N++  
Sbjct: 65  NTRLLNLHENQIQ----------------------IIKVNSFKHLRHLEILQLSRNHIR- 101

Query: 412 TIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469
           TI    G F+    L TL L +N L    +  F   S L+ L L +N +E     +  + 
Sbjct: 102 TIEI--GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 470 IKLEVVNVGK-NMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI-TFPF-QALRIID 526
             L  +++G+   +S         L  L+ L L             I        L  +D
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL------REIPNLTPLIKLDELD 213

Query: 527 LSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMF 586
           LS N  +  +    F  +                                  LQK+    
Sbjct: 214 LSGNHLS-AIRPGSFQGLM--------------------------------HLQKL---- 236

Query: 587 RAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
                 +++          N +SL  +NL+HN+LT      F  +  LE + L  N
Sbjct: 237 ---WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (278), Expect = 1e-25
 Identities = 90/496 (18%), Positives = 184/496 (37%), Gaps = 48/496 (9%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR 219
            T  ++S NY      S + +L  L  + +S N +    I +F+    L+ + L  N++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 220 GTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL--LSFTSSANIS 277
               +     VNL  LDLS N         +F  + +L+FL LS   L   S    A+++
Sbjct: 83  KISCHP---TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 278 IKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW-KSLIDL 336
           I   L  L           E P  L++        L       +          K++ +L
Sbjct: 140 ISKVLLVLGETYGEK----EDPEGLQD---FNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 337 DLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI--- 393
           +LSN      +      ++ L         + L   P    L ++N + +      I   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSIL---------AKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFS----TELITLHLKNNSLEGHIHDTFANASHLR 449
              +++ Y S+S+  L G +     ++S      L    + ++         +   S++ 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
             +   +          +K      ++   N+++D+     G L EL+ L+L+ N+    
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 569
              + +T   ++L+ +D+S N  +    +      +++ +++                +T
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN-----------MSSNILT 412

Query: 570 VAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629
             +        K+L      D   N+    IP+ +   ++L+ LN++ N L       F+
Sbjct: 413 DTIFRCLPPRIKVL------DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 630 NMTALESLDLSFNKLD 645
            +T+L+ + L  N  D
Sbjct: 466 RLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 3e-24
 Identities = 85/477 (17%), Positives = 164/477 (34%), Gaps = 38/477 (7%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +LS   T L++    I   +  DI  L  L+IL ++ N ++  YL      S  +    L
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQ-YLD----ISVFKFNQEL 71

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHH--VSGLSYLTTFDLSGNYF 171
             LD+        I            +  + N F   LP       +S L    LS  + 
Sbjct: 72  EYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHL 127

Query: 172 QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPN----SLQDVRLEENEIRGTIPNSTF 227
           +      +  L     + +         D   L +    SL  V     E    +  S  
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL----LSFTSSANISIKYSLP 283
            + NL + ++          +      K      LSN +L     ++ S   I       
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 284 SLKVLRFAYCNITEFPGFLRNS------EELYLLDLSNNRIQGRISKS-DSPGWKSLIDL 336
           ++     +   +     F          + L +  + ++      S   +     ++ + 
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 337 DLSNNFMTHIELHPWM-NITTLDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPS 392
            +S   M H+     +     LD  NN +              + L++  N+L  ++   
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKI 366

Query: 393 IC---SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
                 + SLQ L +S N++S        +++  L++L++ +N L   I         ++
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
            LDL+SNK++  +P+ + K   L+ +NV  N +          L  L+ + L +N +
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.5 bits (222), Expect = 8e-19
 Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 49/378 (12%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
            ++S+L  L LS   L   + +   +A       LL LG T      P  L + ++    
Sbjct: 112 GNMSQLKFLGLSTTHLE--KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 62  LDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +     +      D     + NL++  +    +        +  + L+    LS L +  
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229

Query: 121 CNFTGSIPTSIGNLTRATEI--------AFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQ 172
              T +    I  L   T +                    +  + L  L+   +  + F 
Sbjct: 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 173 GGVPSWLFT-------------------------LPSLLSIDLSKNML-NGPIDLFQLPN 206
               S+++                          +   L +D S N+L +   +      
Sbjct: 290 F-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT 348

Query: 207 SLQDVRLEENEIRGTIPNSTF---QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS 263
            L+ + L+ N+++  +        Q+ +L  LD+S N++S   +    S  K L  L++S
Sbjct: 349 ELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 264 NNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRIS 323
           +N L               P +KVL      I   P  +   E L  L++++N+++  + 
Sbjct: 408 SNILTDTIFRCL------PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 324 KSDSPGWKSLIDLDLSNN 341
                   SL  + L  N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 55/344 (15%), Positives = 105/344 (30%), Gaps = 20/344 (5%)

Query: 336 LDLSNNFMTHIE---LHPWMNITTLDLRNNRIQG---SILVPPPSTKVLLVSNNKLSGKI 389
           L++S N+++ +    +     +  L + +NRIQ    S+       + L +S+NKL  KI
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84

Query: 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASH 447
                   +L++L LS N     +P C   F   ++L  L L    LE       A+ + 
Sbjct: 85  SCH--PTVNLKHLDLSFNAFD-ALPIC-KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140

Query: 448 LR-SLDLNSNKLEGPLPRSLAKC--IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSN 504
            +  L L     E   P  L       L +V              + ++  L++  ++  
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200

Query: 505 RFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFY 564
                                  +            F  +  +                 
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260

Query: 565 DESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNI 624
            +            L+ +           + F      +   F ++ + N + +      
Sbjct: 261 GQLDFRDFDYSGTSLKAL----SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 625 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            +    ++    LD S N L   + E    +T L  L L  N+L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 20/176 (11%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLL--NLSST 58
           S +S   HLD S  +LT            +LT+L  L L    +  +   + +   + S 
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCG----HLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 59  MTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLD 117
              LD+    +  +          +L  L ++ N      L  + +         + VLD
Sbjct: 377 -QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-----LTDTIFRCLPP---RIKVLD 427

Query: 118 IGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQ 172
           +       SIP  +  L    E+  ASN     +P  +   L+ L    L  N + 
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           + S+N         + +   L++L +SHN +       F+    LE LDLS NKL   I 
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-IS 85

Query: 650 EQLLSVTALALLNLSYNRLWGRIPRGNQF 678
                   L  L+LS+N     +P   +F
Sbjct: 86  CHPT--VNLKHLDLSFNAF-DALPICKEF 111

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (269), Expect = 1e-25
 Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 22/244 (9%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLS-GAIRFDQFSKLKKLQFLD 261
           +P+S   + LE N+++ ++P+  F  L  LT L LSSN LS              L++LD
Sbjct: 26  IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 262 LSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQ 319
           LS N +++ +S+        L  L+ L F + N+ +        +   L  LD+S+   +
Sbjct: 85  LSFNGVITMSSNFL-----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 320 GRISKSDSPGWKSLIDLDLS-NNFMTHIELHPWM---NITTLDLRNNRIQ---GSILVPP 372
                    G  SL  L ++ N+F  +     +    N+T LDL   +++    +     
Sbjct: 140 -VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 373 PSTKVLLVSNNKLSGKIPPSICS-LSSLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLK 430
            S +VL +S+N     +       L+SLQ L  S N++  T     L +F + L  L+L 
Sbjct: 199 SSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 431 NNSL 434
            N  
Sbjct: 257 QNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 4e-25
 Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 36/259 (13%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLN----GPIDLFQLPNSLQDVRLEEN 216
            T  +L  N  Q         L  L  + LS N L+         F   + L+ + L  N
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYLDLSFN 88

Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANI 276
            +  T+ ++   L  L  LD   +NL     F  F  L+ L +LD+S+       +    
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-- 145

Query: 277 SIKYSLPSLKVLRFAYCNITEF--PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLI 334
                L SL+VL+ A  +  E   P        L  LDLS  +++ ++S +      SL 
Sbjct: 146 --FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 335 DLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPP 391
            L++S+N    ++        ++  LD   N I           +               
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT---SKKQELQHF------------- 246

Query: 392 SICSLSSLQYLSLSDNNLS 410
                SSL +L+L+ N+ +
Sbjct: 247 ----PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 6e-23
 Identities = 60/292 (20%), Positives = 94/292 (32%), Gaps = 62/292 (21%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            + S+ T L+L   +++        +L  L  L L+ N                     L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG--------------------L 64

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
           S                                          G + L   DLS N    
Sbjct: 65  SFKGCC--------------------------------SQSDFGTTSLKYLDLSFNGVI- 91

Query: 174 GVPSWLFTLPSLLSIDLSKNMLN--GPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LV 230
            + S    L  L  +D   + L       +F    +L  + +     R    N  F  L 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLS 150

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           +L +L ++ N+       D F++L+ L FLDLS   L   + +A      SL SL+VL  
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNM 206

Query: 291 AYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
           ++ N         +    L +LD S N I     +       SL  L+L+ N
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 7e-21
 Identities = 65/323 (20%), Positives = 106/323 (32%), Gaps = 81/323 (25%)

Query: 355 TTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLS 410
           T +   +  +     VP   P S   L + +NKL   +P  +   L+ L  LSLS N LS
Sbjct: 10  TEIRCNSKGLTS---VPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 411 GTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL-A 467
                C  +    T L  L L  N +   +   F     L  LD   + L+     S+  
Sbjct: 66  -FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDL 527
               L  +++       +F      L  L++L                           +
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL--------------------------KM 157

Query: 528 SHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFR 587
           + N F       IF  +           L +                             
Sbjct: 158 AGNSFQENFLPDIFTEL---------RNLTF----------------------------- 179

Query: 588 AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR 647
            +D S+ +     P    +  SL+VLN+SHN+        ++ + +L+ LD S N +   
Sbjct: 180 -LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 648 IPEQLLS--VTALALLNLSYNRL 668
             +Q L    ++LA LNL+ N  
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 56/302 (18%), Positives = 95/302 (31%), Gaps = 74/302 (24%)

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           + T L+L SN L  ++    F KL +L  L LS+N L      +         SLK L  
Sbjct: 29  SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--TTSLKYLDL 85

Query: 291 AYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGW-KSLIDLDLSNNFMTHIELH 349
           ++  +          E+L  LD  ++     + +        SL +L             
Sbjct: 86  SFNGVITMSSNFLGLEQLEHLDFQHS----NLKQMSEFSVFLSLRNL------------- 128

Query: 350 PWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICS-LSSLQYLSLSDNN 408
                  LD+ +   +                           I + LSSL+ L ++ N+
Sbjct: 129 -----IYLDISHTHTR----------------------VAFNGIFNGLSSLEVLKMAGNS 161

Query: 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
                 P                        D F    +L  LDL+  +LE   P +   
Sbjct: 162 FQENFLP------------------------DIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLS 528
              L+V+N+  N            L+ L++L    N          +     +L  ++L+
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLT 256

Query: 529 HN 530
            N
Sbjct: 257 QN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 56/271 (20%), Positives = 90/271 (33%), Gaps = 64/271 (23%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
             L++LT L LS   L+ +           T L  L L    +  +   + L L   +  
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM-SSNFLGLEQ-LEH 105

Query: 62  LDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           LD   + +K      +F  L NL  L ++                         V   G 
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------------------TRVAFNG- 144

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
                                F              GLS L    ++GN FQ      +F
Sbjct: 145 --------------------IFN-------------GLSSLEVLKMAGNSFQENFLPDIF 171

Query: 181 T-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDL 237
           T L +L  +DLS+  L       F   +SLQ + +  N    ++    ++ L +L +LD 
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDY 230

Query: 238 SSNNLSGAIRFDQFSKL-KKLQFLDLSNNSL 267
           S N++    +  +       L FL+L+ N  
Sbjct: 231 SLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 56/284 (19%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
           PS CS S    +  +   L+ ++P       +    L L++N L+   H  F   + L  
Sbjct: 2   PSRCSCSG-TEIRCNSKGLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           L L+SN L      S +                            LK L L  N      
Sbjct: 57  LSLSSNGLSFKGCCSQS----------------------DFGTTSLKYLDLSFNGV---- 90

Query: 511 CNSNITFPFQ---ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD-EQGRLEYM-GGAFYD 565
               ++  F     L  +D  H+         +F S+  +  +D           G F  
Sbjct: 91  --ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPE-VLGNFKSLKVLNLSHNSLTGNI 624
                            L     +  + N F       +    ++L  L+LS   L    
Sbjct: 149 -----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191

Query: 625 PVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           P +F ++++L+ L++S N            + +L +L+ S N +
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 46/207 (22%)

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531
              + +  N +          L +L  L L SN      C S   F   +L+ +DLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDF 591
                                              +++    G + QL+ +       DF
Sbjct: 90  VI---------------------------------TMSSNFLGLE-QLEHL-------DF 108

Query: 592 SRNRFHGEIPE--VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
             +    ++ E  V  + ++L  L++SH          F  +++LE L ++ N       
Sbjct: 109 QHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 650 EQLLS-VTALALLNLSYNRLWGRIPRG 675
             + + +  L  L+LS  +L  ++   
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE-QLSPT 193

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 587 RAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLT--GNIPVSFENMTALESLDLSFNKL 644
             ++   N+       V      L  L+LS N L+  G    S    T+L+ LDLSFN +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 645 DGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQF 678
              +    L +  L  L+  ++ L  ++   + F
Sbjct: 91  -ITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVF 122

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (273), Expect = 2e-25
 Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 15/231 (6%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR 219
               +L  N  Q         L  L  + L +N +    +  F    SL  + L +N + 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 220 GTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISI 278
             IP+  F+ L  L  L L +N +  +I    F+++  L  LDL     L + S      
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE- 193

Query: 279 KYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDL 338
              L +LK L    CNI + P        L  L++S N     I      G  SL  L +
Sbjct: 194 --GLFNLKYLNLGMCNIKDMPNL-TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWV 249

Query: 339 SNNFMTHIE---LHPWMNITTLDLRNNR---IQGSILVPPPSTKVLLVSNN 383
            N+ ++ IE        ++  L+L +N    +   +  P      L + +N
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  106 bits (267), Expect = 1e-24
 Identities = 54/252 (21%), Positives = 98/252 (38%), Gaps = 20/252 (7%)

Query: 120 FCNFTG--SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177
            C   G   +P  I   +    +    N+           L +L    L  N  +  +  
Sbjct: 60  VCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEV 116

Query: 178 WLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTI 234
             F  L SL +++L  N L   P   F+  + L+++ L  N I  +IP+  F  + +L  
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMR 175

Query: 235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN 294
           LDL        I    F  L  L++L+L   ++    +         L  L+ L  +  +
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP------LVGLEELEMSGNH 229

Query: 295 ITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHP 350
             E   G       L  L + N+++   I ++   G  SL++L+L++N ++ +      P
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 351 WMNITTLDLRNN 362
              +  L L +N
Sbjct: 289 LRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 58/293 (19%), Positives = 98/293 (33%), Gaps = 69/293 (23%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            + S    L+L    I+    D    L +L++L L  N                     +
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN--------------------SI 111

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
             +++G                     AF             +GL+ L T +L  N+   
Sbjct: 112 RQIEVG---------------------AF-------------NGLASLNTLELFDNWLT- 136

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRL-EENEIRGTIPNSTFQ-L 229
            +PS  F  L  L  + L  N +   P   F    SL  + L E  ++   I    F+ L
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGL 195

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
            NL  L+L   N+         + L  L+ L++S N        +     + L SLK L 
Sbjct: 196 FNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLW 248

Query: 290 FAYCNITEF-PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
                ++            L  L+L++N +   +        + L++L L +N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 56/313 (17%), Positives = 106/313 (33%), Gaps = 63/313 (20%)

Query: 391 PSICS-LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
           PS+CS  +    +  +   LS  +P       +    L+L  N+++    DTF +  HL 
Sbjct: 47  PSVCSCSNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLE 102

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
            L L  N +      +      L  + +  N ++         L +L+ L LR+N     
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI--- 159

Query: 510 LCNSNI---TF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
               +I    F    +L  +DL   +   ++    F  +  +                  
Sbjct: 160 ---ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL------------------ 198

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625
                                + ++        ++P  L     L+ L +S N      P
Sbjct: 199 ---------------------KYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRP 235

Query: 626 VSFENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNLSYNRLWGRIPRGNQFNTFEND 684
            SF  +++L+ L +  +++   I       + +L  LNL++N L   +P       F   
Sbjct: 236 GSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL-SSLPHD----LFTPL 289

Query: 685 SYIGNIHLCGEPL 697
            Y+  +HL   P 
Sbjct: 290 RYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 60/269 (22%), Positives = 97/269 (36%), Gaps = 65/269 (24%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
            HL  L  L L    +  IE   F    + L  L+ L L    +++I   +   LS  + 
Sbjct: 96  RHLHHLEVLQLGRNSIRQIEVGAF----NGLASLNTLELFDNWLTVIPSGAFEYLSK-LR 150

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
           +L L    I+ + P   F  +P+L  L L    +L  Y+           L  L  L++G
Sbjct: 151 ELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YIS----EGAFEGLFNLKYLNLG 204

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
            CN    +P                          ++ L  L   ++SGN+F    P   
Sbjct: 205 MCNIK-DMPN-------------------------LTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLS 238
             L SL  + +  + ++                         I  + F  L +L  L+L+
Sbjct: 239 HGLSSLKKLWVMNSQVS------------------------LIERNAFDGLASLVELNLA 274

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267
            NNLS ++  D F+ L+ L  L L +N  
Sbjct: 275 HNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 36/228 (15%)

Query: 353 NITTLDLRNNRI---QGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNN 408
           N   L+L  N I   Q          +VL +  N +  +I       L+SL  L L DN 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 409 LSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDL-NSNKLEGPLPRS 465
           L+  IP   G F   ++L  L L+NN +E      F     L  LDL    KLE     +
Sbjct: 135 LT-VIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR--------FYG-------PL 510
                 L+ +N+G   I D     L  L  L+ L +  N         F+G        +
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 511 CNSNITF----PFQ---ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
            NS ++      F    +L  ++L+HN  +  LP  +F  +  +  + 
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (258), Expect = 5e-24
 Identities = 61/275 (22%), Positives = 106/275 (38%), Gaps = 31/275 (11%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
           L  +++ + L  N I   I NS  Q  VNL  L L+SN ++  I  D FS L  L+ LDL
Sbjct: 50  LTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP--GFLRNSEELYLLDLSNNRIQG 320
           S N L + +SS        L SL  L                 +  +L +L + N     
Sbjct: 108 SYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 321 RISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGSILVPP----- 372
           +I + D  G   L +L++  + +   E   L    N++ L L   +     L+       
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---LLLEIFVDV 220

Query: 373 -PSTKVLLVSNNKLSGKIPPSICS--------LSSLQYLSLSDNNLSGTIPPCLGNFSTE 423
             S + L + +  L       + +          + + + ++D +L   +   L    + 
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI-SG 278

Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
           L+ L    N L+      F   + L+ + L++N  
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  102 bits (257), Expect = 8e-24
 Identities = 55/266 (20%), Positives = 98/266 (36%), Gaps = 23/266 (8%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR 219
           + + DLS N       S L    +L ++ L+ N +N    D F    SL+ + L  N + 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 220 GTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISI 278
             + +S F+ L +LT L+L  N          FS L KLQ L + N    +     + + 
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA- 171

Query: 279 KYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLD 337
              L  L+ L     ++  +    L++ + +  L L   +    + +       S+  L+
Sbjct: 172 --GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 338 LSNNFMTHIE-----------LHPWMNITTLDLRNNRIQG--SILVPPPSTKVLLVSNNK 384
           L +  +               L        + + +  +     +L        L  S N+
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288

Query: 385 LSGKIPPSIC-SLSSLQYLSLSDNNL 409
           L   +P  I   L+SLQ + L  N  
Sbjct: 289 LKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 48/298 (16%), Positives = 102/298 (34%), Gaps = 45/298 (15%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            L+  +  LDL   RI      D+ R  NLQ L L  N  +                   
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GIN------------------ 89

Query: 114 SVLDIGFCNFTGSIPTSI-GNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYF 171
                       +I      +L     +  + N+ +  L       LS LT  +L GN +
Sbjct: 90  ------------TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPY 136

Query: 172 QGGVPSWLFT-LPSLLSIDLSKNMLNG--PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ 228
           +    + LF+ L  L  + +             F     L+++ ++ ++++ +    + +
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLK 195

Query: 229 -LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS----LP 283
            + N++ L L        +          ++ L+L +  L +F  S   + + +      
Sbjct: 196 SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 284 SLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
           + + ++    ++ +    L     L  L+ S N+++  +         SL  + L  N
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 3e-20
 Identities = 48/252 (19%), Positives = 92/252 (36%), Gaps = 22/252 (8%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
                L  L L+   +  IE+ +F     +L  L  L L    +S +       LSS +T
Sbjct: 73  QRCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLSS-LT 127

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            L+L G   K      +F  L  LQIL +      T  + + +++     L  L  L+I 
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAG----LTFLEELEID 182

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY--------F 171
             +     P S+ ++   + +          L   V   S +   +L             
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 172 QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LV 230
             G  + L    +  ++ ++   L   + L    + L ++    N+++ ++P+  F  L 
Sbjct: 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301

Query: 231 NLTILDLSSNNL 242
           +L  + L +N  
Sbjct: 302 SLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 51/326 (15%), Positives = 111/326 (34%), Gaps = 36/326 (11%)

Query: 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
             +  S         S  +L+ +IP      +  + +L L NN +    +       +L+
Sbjct: 24  NQASLSCDRNGICKGSSGSLN-SIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQ 79

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
           +L L SN +      S +    LE +++  N +S+    W   L  L  L L  N +   
Sbjct: 80  ALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT- 138

Query: 510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 569
           L  +++      L+I+ + + +    + R+ F  +  ++ ++                + 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE-----------IDASDLQ 187

Query: 570 VAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN----IP 625
                    +Q +      +     +    +   +    S++ L L    L       + 
Sbjct: 188 SYEPKSLKSIQNV----SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 626 V----SFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTF 681
                S        ++ ++   L  ++ + L  ++ L  L  S N+L   +P G     F
Sbjct: 244 TGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-VPDG----IF 297

Query: 682 ENDSYIGNIHLCGEPLTVRCSNDGLP 707
           +  + +  I L   P    CS   + 
Sbjct: 298 DRLTSLQKIWLHTNPW--DCSCPRID 321

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 48/226 (21%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           S L  L HLDLS+  L+ +    F      L+ L+ L+L       +   SL +  + + 
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 61  DLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKS-NWSSPLRELDL------ 112
            L +G            F  L  L+ L ++ +  L  Y PKS      +  L L      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 113 -----------------LSVLDIGFCNFTGSIPT----SIGNLTRATEIAFASNHFTGQL 151
                            L   D+   +F+  + T    S+        +         Q+
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKITDESLF-QV 269

Query: 152 PHHVSGLSYLTTFDLSGNYFQGGVPSWLFT-LPSLLSIDLSKNMLN 196
              ++ +S L   + S N  +  VP  +F  L SL  I L  N  +
Sbjct: 270 MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (264), Expect = 7e-24
 Identities = 96/567 (16%), Positives = 179/567 (31%), Gaps = 90/567 (15%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIR 219
                LS N         +  L  L  + LS N +      +F     L+ + +  N ++
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 220 GTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL--LSFTSSANIS 277
             I      + +L  LDLS N+        +F  L KL FL LS      L     A++ 
Sbjct: 114 -NISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 278 IKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLD 337
           +   L  L                      L     S   +Q  +S +      +L  L 
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN------ALGHLQ 224

Query: 338 LSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLS 397
           LSN  +        M   +   R   +    L    +T    V   +             
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF--------WPR 276

Query: 398 SLQYLSLSDNNLSGTIPPCLGNFST----ELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
            ++YL++ +  ++  I      +S      L+  H+KN          ++  + +    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
           + +                  +N  +N+ +DS      +L  L+ L+L+ N        +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396

Query: 514 NITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573
            +T    +L  +D+S N            S    +       +                 
Sbjct: 397 LMTKNMSSLETLDVSLNS---------LNSHAYDRTCAWAESILV--------------- 432

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
                          ++ S N   G +   L     +KVL+L +N +  +IP    ++ A
Sbjct: 433 ---------------LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474

Query: 634 LESLDLSFNKLDGRIP----EQLLSVTALALLN---------LSYNRLWGRIPRGNQFNT 680
           L+ L+++ N+L   +P    ++L S+  + L +         + Y   W           
Sbjct: 475 LQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN--------- 524

Query: 681 FENDSYIGNIHLCGEPLTVRCSNDGLP 707
            ++   + N      P + +CS  G P
Sbjct: 525 -KHSGVVRNSAGSVAPDSAKCSGSGKP 550

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.9 bits (236), Expect = 2e-20
 Identities = 87/454 (19%), Positives = 147/454 (32%), Gaps = 42/454 (9%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           S LS+L  L LS   +  ++   F         L  L +    +  I    + +L     
Sbjct: 73  SFLSELRVLRLSHNRIRSLDFHVFL----FNQDLEYLDVSHNRLQNISCCPMASL----R 124

Query: 61  DLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLT----GYLPKSNWSSPLRELDLLSV 115
            LDL             F  L  L  L L+   +        +   + S  L +L    +
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
                 +      T++ +L       F+              LS +   D +        
Sbjct: 184 KGGETESLQ-IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM-TF 241

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR----------GTIPNS 225
            S L   P+LL++ L            +L        +E   I                S
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWK-CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 226 TFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL 285
              L +L I  + +       +   +S   ++    LS +               S  S 
Sbjct: 301 ETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVC----PPSPSSF 355

Query: 286 KVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSP-GWKSLIDLDLSNNFM 343
             L F     T+         + L  L L  N ++     +       SL  LD+S N +
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 344 THIE---LHPWM-NITTLDLRNNRIQGSILVP-PPSTKVLLVSNNKLSGKIPPSICSLSS 398
                     W  +I  L+L +N + GS+    PP  KVL + NN++   IP  +  L +
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQA 474

Query: 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432
           LQ L+++ N L  ++P  + +  T L  + L +N
Sbjct: 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 102/503 (20%), Positives = 168/503 (33%), Gaps = 66/503 (13%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L      L L    I      DI  L  L++L L+ N ++   L              L
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIR-SLD----FHVFLFNQDL 102

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV--SGLSYLTTFDLSGNYF 171
             LD+   N   +I      +     +  + N F   LP       L+ LT   LS   F
Sbjct: 103 EYLDVS-HNRLQNISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 172 QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN 231
           +         L  +  + LS  +L+       +   ++    E  +I  T          
Sbjct: 159 RQL------DLLPVAHLHLSCILLD------LVSYHIKGGETESLQIPNTT--------- 197

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFA 291
           +  L    N+L         + L  LQ  ++  N          +S     P+L  +   
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 292 YCNIT--EFPGFLRNSEELYL--LDLSNNRIQGRISKSDSPGW----KSLIDLDLSNNFM 343
           +   T        +      +  L++ N  I  RI + +        KSL+   + N   
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 344 THIE--LHPWM-NITTLDLRNNRIQGSILVPPP----STKVLLVSNNKLSGKIPPSICSL 396
              +  L+     +    L  +     I +  P    S   L  + N  +  +     +L
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 397 SSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDT-FANASHLRSLDL 453
             LQ L L  N L              + L TL +  NSL  H +D   A A  +  L+L
Sbjct: 377 KRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF----YGP 509
           +SN L G + R L    K++V+++  N I  S P  +  L  L+ L + SN+      G 
Sbjct: 436 SSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492

Query: 510 LCNSNITFPFQALRIIDLSHNEF 532
                      +L+ I L  N +
Sbjct: 493 FDR------LTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 93/519 (17%), Positives = 175/519 (33%), Gaps = 91/519 (17%)

Query: 175 VPSWLFTLPSLLSIDLSKNMLN--GPIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVN 231
           VP  L   P   ++ LS+N ++     D+  L   L+ +RL  N IR ++    F    +
Sbjct: 46  VPKDL--PPRTKALSLSQNSISELRMPDISFLSE-LRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFA 291
           L  LD+S N L           +  L+ LDLS N               +L  L  L   
Sbjct: 102 LEYLDVSHNRLQNI----SCCPMASLRHLDLSFNDFDVLPVCKEFG---NLTKLTFL--- 151

Query: 292 YCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
                                LS  + +       +    S I LDL +  +   E    
Sbjct: 152 --------------------GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191

Query: 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN--- 408
               T  L                 ++   N+  S ++  S+ +L  LQ  ++  N+   
Sbjct: 192 QIPNTTVLH----------------LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 409 ---LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465
              ++       G     +   H++           F     +  L++ +  +   + R 
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 466 LAKCIK-----LEVVNVGKNMISDSFPCWLGSLHELKILVLRSN--RFYGPLCNSNITFP 518
                +     L + +V   +   S         E+ I +L  +   F   +C  + +  
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS- 354

Query: 519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG-RLEYMGGAFYDESITVAMQGHDF 577
                 ++ + N FT     +   +++ ++ +  Q   L+             +++  D 
Sbjct: 355 ---FTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 578 QLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA-LES 636
            L  +                         +S+ VLNLS N LTG++   F  +   ++ 
Sbjct: 411 SLNSLN-------------SHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKV 454

Query: 637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675
           LDL  N++   IP+ +  + AL  LN++ N+L   +P G
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQL-KSVPDG 491

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 56/242 (23%), Positives = 81/242 (33%), Gaps = 37/242 (15%)

Query: 175 VPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNL 232
           VP  +    +   I L  N ++  P   F+   +L  + L  N +   I  + F  L  L
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
             LDLS N    ++    F  L +L  L L    L              L +L+ L    
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQD 138

Query: 293 CNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---L 348
             +   P    R+   L  L L  NRI   + +    G  SL  L L  N + H+     
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 349 HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDN 407
                + TL L  N +                        +P      L +LQYL L+DN
Sbjct: 198 RDLGRLMTLYLFANNLS----------------------ALPTEALAPLRALQYLRLNDN 235

Query: 408 NL 409
             
Sbjct: 236 PW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.1 bits (232), Expect = 5e-21
 Identities = 47/220 (21%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
           ++P  I     +  I    N  +            LT   L  N       +    L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 186 LSIDLSKNML--NGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNL 242
             +DLS N    +     F     L  + L+   ++  +    F+ L  L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GF 301
             A+  D F  L  L  L L  N + S    A       L SL  L      +       
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR----GLHSLDRLLLHQNRVAHVHPHA 196

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
            R+   L  L L  N +   +        ++L  L L++N
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 61/267 (22%), Positives = 89/267 (33%), Gaps = 64/267 (23%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            + +    + L G RI            NL IL+L+ N                      
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN---------------------- 66

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
                               L R    AF             +GL+ L   DLS N    
Sbjct: 67  -------------------VLARIDAAAF-------------TGLALLEQLDLSDNAQLR 94

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LV 230
            V    F  L  L ++ L +  L      LF+   +LQ + L++N ++  +P+ TF+ L 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRF 290
           NLT L L  N +S ++    F  L  L  L L  N +      A       L  L  L  
Sbjct: 154 NLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR----DLGRLMTLYL 208

Query: 291 AYCNITEFP-GFLRNSEELYLLDLSNN 316
              N++  P   L     L  L L++N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 65/265 (24%)

Query: 7   LTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLG 65
              + L    ++ +   +F         L++L L +  ++ I   +              
Sbjct: 34  SQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTG----------- 78

Query: 66  GTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG 125
                         L  L+ L L+ N+QL   +  + +      L  L  L +  C    
Sbjct: 79  --------------LALLEQLDLSDNAQLR-SVDPATFHG----LGRLHTLHLDRCGLQ- 118

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT-LPS 184
            +              F              GL+ L    L  N  Q  +P   F  L +
Sbjct: 119 ELGPG----------LFR-------------GLAALQYLYLQDNALQ-ALPDDTFRDLGN 154

Query: 185 LLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNL 242
           L  + L  N ++  P   F+  +SL  + L +N +   +    F+ L  L  L L +NNL
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SGAIRFDQFSKLKKLQFLDLSNNSL 267
           S A+  +  + L+ LQ+L L++N  
Sbjct: 214 S-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 56/256 (21%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHL 429
           P +++ + +  N++S     S  +  +L  L L  N L+  I      F+    L  L L
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA--AAFTGLALLEQLDL 87

Query: 430 KNNSLEGHIH-DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPC 488
            +N+    +   TF     L +L L+   L+   P        L+ + +  N +      
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 489 WLGSLHELKILVLRSNRFYGPLCNSNI---TF-PFQALRIIDLSHNEFTGFLPRRIFPSM 544
               L  L  L L  NR       S++    F    +L  + L  N     +    F  +
Sbjct: 148 TFRDLGNLTHLFLHGNRI------SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDL 200

Query: 545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVL 604
                                            +L  +           N       E L
Sbjct: 201 G--------------------------------RLMTL-------YLFANNLSALPTEAL 221

Query: 605 GNFKSLKVLNLSHNSL 620
              ++L+ L L+ N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 50/279 (17%), Positives = 76/279 (27%), Gaps = 57/279 (20%)

Query: 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
           C        S     L   +P            + L  N +      +F    +L  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNM-ISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
           +SN L      +      LE +++  N  +    P     L  L  L L           
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL------ 117

Query: 513 SNI---TF-PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI 568
             +    F    AL+ + L  N     LP   F  +  +                     
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL--------------------- 155

Query: 569 TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
                               +    NR             SL  L L  N +    P +F
Sbjct: 156 ------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 629 ENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYN 666
            ++  L +L L  N L   +P + L  + AL  L L+ N
Sbjct: 198 RDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
             L +L  L L  C L  +    F      L  L  L+L    +  +   +  +L + +T
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFR----GLAALQYLYLQDNALQALPDDTFRDLGN-LT 156

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            L L G RI  + P+  FR L +L  L L+ N ++  ++         R+L  L  L + 
Sbjct: 157 HLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN-RVA-HVH----PHAFRDLGRLMTLYLF 209

Query: 120 FCNFTGSIPTSI-GNLTRATEIAFASN 145
             N + ++PT     L     +    N
Sbjct: 210 ANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 601 PEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRIPEQLLS-VTAL 658
           P        L  L+L    L   +    F  + AL+ L L  N L   +P+     +  L
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 659 ALLNLSYNRLWGRIPRG 675
             L L  NR+   +P  
Sbjct: 156 THLFLHGNRIS-SVPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 587 RAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 646
           + +    NR            ++L +L L  N L      +F  +  LE LDLS N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 647 RIPEQLLS-VTALALLNLSYNRLWGRIPRG 675
            +       +  L  L+L    L   +  G
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGL-QELGPG 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (252), Expect = 2e-22
 Identities = 53/309 (17%), Positives = 105/309 (33%), Gaps = 20/309 (6%)

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
               +  +L K  +   +   +L + +  +    ++I+ ++      L N+T L L+ N 
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIK-SVQGIQ-YLPNVTKLFLNGNK 76

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           L+        + LK L +L L  N +   +S  +      L  LK L   +  I++  G 
Sbjct: 77  LT---DIKPLTNLKNLGWLFLDENKIKDLSSLKD------LKKLKSLSLEHNGISDING- 126

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLR 360
           L +  +L  L L NN+I      +       L  L L +N ++ I  L     +  L L 
Sbjct: 127 LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183

Query: 361 NNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGN 419
            N I     L    +  VL + + +   K      +L     +  +D +L  T      +
Sbjct: 184 KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDD 242

Query: 420 FSTELITLHLKNNSLEGHIHDTFANASHLRSLDLN-SNKLEGPLPRSLAKCIKLEVVNVG 478
              E   +          +   F     +         ++  PL         ++   + 
Sbjct: 243 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIK 302

Query: 479 KNMISDSFP 487
             + + +  
Sbjct: 303 TKVEAGTRI 311

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.3 bits (244), Expect = 2e-21
 Identities = 58/293 (19%), Positives = 107/293 (36%), Gaps = 24/293 (8%)

Query: 208 LQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267
           + +       I+   P+           +L   +++ A+     ++L  +  +  +N+ +
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDI 55

Query: 268 LSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDS 327
            S      I     LP++  L      +T+    L N + L  L L  N+I+     S  
Sbjct: 56  KSVQ---GIQ---YLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK---DLSSL 105

Query: 328 PGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQG-SILVPPPSTKVLLVSNNKL 385
              K L  L L +N ++ I  L     + +L L NN+I   ++L        L + +N++
Sbjct: 106 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 165

Query: 386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA 445
           S  I P +  L+ LQ L LS N++S  +   L      L  L L +        +  +N 
Sbjct: 166 S-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGL-KNLDVLELFSQECLNKPINHQSNL 220

Query: 446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKI 498
               ++      L  P   S       E  NV  ++   +          + I
Sbjct: 221 VVPNTVKNTDGSLVTPEIIS--DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTI 271

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.4 bits (234), Expect = 3e-20
 Identities = 48/284 (16%), Positives = 93/284 (32%), Gaps = 44/284 (15%)

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFA 291
           +      S  +    +        +    +L   S+       +   +  L S+  +   
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSV------TDAVTQNELNSIDQIIAN 51

Query: 292 YCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHP 350
             +I    G ++    +  L L+ N++            K+L  L L  N +  +  L  
Sbjct: 52  NSDIKSVQG-IQYLPNVTKLFLNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLSSLKD 107

Query: 351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
              + +L L +N I                        I   +  L  L+ L L +N ++
Sbjct: 108 LKKLKSLSLEHNGIS----------------------DING-LVHLPQLESLYLGNNKIT 144

Query: 411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCI 470
             I   L    T+L TL L++N +   I    A  + L++L L+ N +     R+LA   
Sbjct: 145 -DITV-LSRL-TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHISDL--RALAGLK 197

Query: 471 KLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN 514
            L+V+ +      +       +L     +         P   S+
Sbjct: 198 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 7e-14
 Identities = 62/366 (16%), Positives = 105/366 (28%), Gaps = 79/366 (21%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
               +    +L   +++     + LN   ++  +    + IK +    I  LPN+  LFL
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK-SV-QGIQYLPNVTKLFL 72

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
           N N +LT          PL  L  L  L +            + +L              
Sbjct: 73  NGN-KLTDI-------KPLTNLKNLGWLFLDENKI-----KDLSSL-------------- 105

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
                    L  L +  L  N       + L  LP L S+ L  N +     L +L    
Sbjct: 106 -------KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITVLSRLT--- 153

Query: 209 QDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
                                  L  L L  N +S        + L KLQ L LS N + 
Sbjct: 154 ----------------------KLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHIS 188

Query: 269 SFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYLLDLSNNRIQGRISKSDS 327
              + A       L +L VL         +      N      +  ++  +      SD 
Sbjct: 189 DLRALAG------LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 328 PGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG 387
                    ++  +         ++    + +   + +    V  P  +V  VS +    
Sbjct: 243 G---DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGT 299

Query: 388 KIPPSI 393
            I   +
Sbjct: 300 VIKTKV 305

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 7e-13
 Identities = 42/318 (13%), Positives = 93/318 (29%), Gaps = 65/318 (20%)

Query: 378 LLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH 437
            +  +  +  +I P   + +     +L   +++  +          +  +   N+ ++  
Sbjct: 4   TITVSTPIK-QIFP-DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIK-S 57

Query: 438 IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELK 497
           +        ++  L LN NKL    P  L     L  + + +N I D     L  L +LK
Sbjct: 58  VQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLK 112

Query: 498 ILVLRSNRFYGPLCNSNITF--PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR 555
            L L  N        S+I        L  + L +N+ T          +  +        
Sbjct: 113 SLSLEHNGI------SDINGLVHLPQLESLYLGNNKIT---------DITVLSR------ 151

Query: 556 LEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNL 615
                                      L     +    N+   +I   L     L+ L L
Sbjct: 152 ---------------------------LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYL 182

Query: 616 SHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG 675
           S N ++ ++  +   +  L+ L+L   +   +      ++     +  +   L       
Sbjct: 183 SKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 676 NQFNTFENDSYIGNIHLC 693
           +  +  + +         
Sbjct: 241 DDGDYEKPNVKWHLPEFT 258

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 2e-11
 Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 71/275 (25%)

Query: 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK- 457
           +         +   I P    F  E I  +LK  S+   +  T    + +  +  N++  
Sbjct: 1   MGETITVSTPIK-QIFP-DDAF-AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI 55

Query: 458 --LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF--YGPLCNS 513
             ++G     +     +  + +  N ++D  P  L +L  L  L L  N+      L + 
Sbjct: 56  KSVQG-----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKD- 107

Query: 514 NITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573
                 + L+ + L HN  +          +  + +                        
Sbjct: 108 -----LKKLKSLSLEHNGIS---------DINGLVH------------------------ 129

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA 633
                    L    ++    N+       VL     L  L+L  N ++ +I      +T 
Sbjct: 130 ---------LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTK 176

Query: 634 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           L++L LS N +       L  +  L +L L     
Sbjct: 177 LQNLYLSKNHI--SDLRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 8e-09
 Identities = 59/411 (14%), Positives = 115/411 (27%), Gaps = 83/411 (20%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
           + L+ +  +  +                ++  +  +              L N+    T 
Sbjct: 40  NELNSIDQIIANNS--------------DIKSVQGIQ------------YLPNV----TK 69

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L L G ++    P  +  L NL  LFL+ N ++          S L++L  L  L +   
Sbjct: 70  LFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDL-------SSLKDLKKLKSLSLEHN 119

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
                  + I  L                       L  L +  L  N  +    + L  
Sbjct: 120 GI-----SDINGL---------------------VHLPQLESLYLGNN--KITDITVLSR 151

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           L  L ++ L  N ++  + L  L   LQ++ L +N I      +   L NL +L+L S  
Sbjct: 152 LTKLDTLSLEDNQISDIVPLAGLTK-LQNLYLSKNHISDLRALA--GLKNLDVLELFSQE 208

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
                     +    L   +   N+  S  +   IS         V         E    
Sbjct: 209 ----CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361
                 +       +    +  K        +    +         +      T      
Sbjct: 265 FYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTK----- 319

Query: 362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
              QG +     + K      N  +  +  +  +L ++     ++  ++ T
Sbjct: 320 ---QGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLT 367

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 24/202 (11%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFS-LLNLSSTM 59
           + +L  +T L L+   LT       L  +NL  L  L L    +  +     L  L    
Sbjct: 61  IQYLPNVTKLFLNGNKLT---DIKPL--TNLKNLGWLFLDENKIKDLSSLKDLKKL---- 111

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
             L L    I     + +  LP L+ L+L  N ++T         + L  L  L  L + 
Sbjct: 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNN-KITDI-------TVLSRLTKLDTLSLE 161

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
               +  I   +  LT+   +  + NH +      ++GL  L   +L          +  
Sbjct: 162 DNQIS-DIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQ 217

Query: 180 FTLPSLLSIDLSKNMLNGPIDL 201
             L    ++  +   L  P  +
Sbjct: 218 SNLVVPNTVKNTDGSLVTPEII 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 99.3 bits (247), Expect = 9e-22
 Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 26/282 (9%)

Query: 198 PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL 257
            I L    N         N I GT  +            L   N + A+   +   + + 
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 258 QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNR 317
             L L+  +L S   +         P + VL      +   P    +   L  LD  +NR
Sbjct: 62  SELQLNRLNLSSLPDNL-------PPQITVLEITQNALISLPELPAS---LEYLDACDNR 111

Query: 318 IQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKV 377
           +    +  + P   SL  LD+ NN +T +   P   +  ++  NN++   +   P S +V
Sbjct: 112 LS---TLPELPA--SLKHLDVDNNQLTMLPELP-ALLEYINADNNQLT-MLPELPTSLEV 164

Query: 378 LLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLG---NFSTELITLHLKNNSL 434
           L V NN+L+  +P       SL+ L +S N L  ++P       +     I    + N +
Sbjct: 165 LSVRNNQLT-FLPE---LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVN 476
             HI +   +     ++ L  N L   +  SL++       +
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.1 bits (205), Expect = 1e-16
 Identities = 67/381 (17%), Positives = 108/381 (28%), Gaps = 96/381 (25%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLS----NNFMTHIELHPWMNITTLDLRNNRIQG 366
            +   N I           W       L     N  ++ ++       + L L    +  
Sbjct: 15  QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 367 SILVP---PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTE 423
              +P   PP   VL ++ N L   +P      +SL+YL   DN LS T+P    +    
Sbjct: 74  ---LPDNLPPQITVLEITQNALI-SLPELP---ASLEYLDACDNRLS-TLPELPAS---- 121

Query: 424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS 483
           L  L + NN L   + +  A    L  ++ ++N+L   LP        LEV++V  N ++
Sbjct: 122 LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLTM-LPELPTS---LEVLSVRNNQLT 173

Query: 484 DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPS 543
              P    SL  L                             D+S N     LP      
Sbjct: 174 -FLPELPESLEAL-----------------------------DVSTNLLES-LPAVPV-- 200

Query: 544 MEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603
                                             +               NR    IPE 
Sbjct: 201 ----------------------------------RNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 663
           + +      + L  N L+  I  S    TA                +Q      LA    
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

Query: 664 SYNRLWGRIPRGNQFNTFEND 684
           ++     +      ++ FE++
Sbjct: 286 AWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 74/433 (17%), Positives = 134/433 (30%), Gaps = 60/433 (13%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL--FTLP 183
           SI   I N    ++ +F  N  +G    + S         L G   +    S L    + 
Sbjct: 2   SIMLPINNNFSLSQNSF-YNTISGTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLIN 59

Query: 184 SLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNL 242
               + L++  L+  P +L      +  + + +N +  ++P       +L  LD   N L
Sbjct: 60  QFSELQLNRLNLSSLPDNLPP---QITVLEITQNALI-SLPEL---PASLEYLDACDNRL 112

Query: 243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFL 302
           S  +          L+ LD+ NN L                 L+ +      +T  P   
Sbjct: 113 S-TLP----ELPASLKHLDVDNNQLTMLPEL--------PALLEYINADNNQLTMLPELP 159

Query: 303 RNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMN------ITT 356
            +   L +L + NN++       + P   SL  LD+S N +  +   P  N         
Sbjct: 160 TS---LEVLSVRNNQLT---FLPELPE--SLEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 357 LDLRNNRIQGSILVPP-----PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
              R NRI     +P        T  +++ +N LS +I  S+   ++           S 
Sbjct: 212 FRCRENRITH---IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 412 TIPPCLGNFST--ELITLHLKNNSLEG--HIHDTFANASHLRSLDLNSNKLEGPLPRSLA 467
           +            + +T     N       I   F +  H  +     ++L   +     
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNT 328

Query: 468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDL 527
              + +V          ++   L +  EL+             C   +   +  LR   L
Sbjct: 329 SGFREQV---------AAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

Query: 528 SHNEFTGFLPRRI 540
            H    G      
Sbjct: 380 VHQASEGLFDNDT 392

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 57/315 (18%), Positives = 103/315 (32%), Gaps = 72/315 (22%)

Query: 375 TKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 434
            K  L   N+         C ++    L L+  NLS ++P  L     ++  L +  N+L
Sbjct: 37  EKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVLEITQNAL 92

Query: 435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLH 494
              + +  A+   L  LD   N+L   LP   A    L   +V  N ++   P     L 
Sbjct: 93  I-SLPELPAS---LEYLDACDNRLST-LPELPASLKHL---DVDNNQLT-MLPELPALL- 142

Query: 495 ELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG 554
             + +   +N+       + +     +L ++ + +N+ T FLP       E  ++     
Sbjct: 143 --EYINADNNQL------TMLPELPTSLEVLSVRNNQLT-FLP-------ELPES----- 181

Query: 555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK--- 611
                                   L+ +       D S N     +P V       +   
Sbjct: 182 ------------------------LEAL-------DVSTNLLE-SLPAVPVRNHHSEETE 209

Query: 612 -VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG 670
                  N +T +IP +  ++    ++ L  N L  RI E L   TA    +        
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 671 RIPRGNQFNTFENDS 685
              + N  +    D+
Sbjct: 269 SDGQQNTLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 61/359 (16%), Positives = 105/359 (29%), Gaps = 83/359 (23%)

Query: 378 LLVSNNKLSGKIPPSICS----LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNS 433
                N +S        S             + N     +  CL     +   L L   +
Sbjct: 15  QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL---INQFSELQLNRLN 70

Query: 434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSL 493
           L   + D       +  L++  N L   LP   A    LE ++   N +S + P    SL
Sbjct: 71  LS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPASL 122

Query: 494 HELKILVLRSNRFYGPLCNSNITFP--FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
             L    + +N+            P     L  I+  +N+ T  LP              
Sbjct: 123 KHLD---VDNNQL--------TMLPELPALLEYINADNNQLT-MLPELP----------- 159

Query: 552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK 611
               LE +                                  N+    +PE+  +   L+
Sbjct: 160 --TSLEVL------------------------------SVRNNQL-TFLPELPES---LE 183

Query: 612 VLNLSHNSLTGNIPVSFENMTALES----LDLSFNKLDGRIPEQLLSVTALALLNLSYNR 667
            L++S N L  ++P         E          N++   IPE +LS+     + L  N 
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNP 241

Query: 668 LWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEALPLASSDHDETASRFDW 726
           L  RI       T + D +   I+           +  L +A+     ++ ++     W
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 4e-13
 Identities = 56/315 (17%), Positives = 109/315 (34%), Gaps = 36/315 (11%)

Query: 44  MSLIKPFS-LLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSN 102
           MS++ P +   +LS       +  +    ++     +     +   N N +    L +  
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTI--SGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECL 57

Query: 103 WSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT 162
            +         S L +   N + S+P ++      T +    N     LP   + L YL 
Sbjct: 58  INQ-------FSELQLNRLNLS-SLPDNLPPQI--TVLEITQNALI-SLPELPASLEYL- 105

Query: 163 TFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTI 222
             D   N     +P       SL  +D+  N L     L +LP  L+ +  + N++   +
Sbjct: 106 --DACDNRLST-LPE---LPASLKHLDVDNNQL---TMLPELPALLEYINADNNQLT-ML 155

Query: 223 PNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL 282
           P       +L +L + +N L+           + L+ LD+S N L S  +   +   +S 
Sbjct: 156 PEL---PTSLEVLSVRNNQLTFL-----PELPESLEALDVSTNLLESLPAV-PVRNHHSE 206

Query: 283 PSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNF 342
            +    R     IT  P  + + +    + L +N +  RI +       +  D      +
Sbjct: 207 ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI-RESLSQQTAQPDYHGPRIY 265

Query: 343 MTHIELHPWMNITTL 357
            +  +         L
Sbjct: 266 FSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 56/283 (19%), Positives = 94/283 (33%), Gaps = 78/283 (27%)

Query: 396 LSSLQYLSLSDNNLSGTIPPCLGNFS------TELITLHLKNNSLEGHIHDTFANASHLR 449
           L      SLS N+   TI     ++        +        N     + +   N     
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFS 62

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
            L LN   L   LP +L    ++ V+ + +N +  S P    SL  L       NR    
Sbjct: 63  ELQLNRLNLSS-LPDNLPP--QITVLEITQNALI-SLPELPASLEYLD---ACDNRL--- 112

Query: 510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 569
              S +     +L+ +D+ +N+ T  LP                            E   
Sbjct: 113 ---STLPELPASLKHLDVDNNQLT-MLP----------------------------ELPA 140

Query: 570 VAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629
                    L+ I       +   N+    +PE+  +   L+VL++ +N LT  +P   E
Sbjct: 141 --------LLEYI-------NADNNQLT-MLPELPTS---LEVLSVRNNQLTF-LP---E 177

Query: 630 NMTALESLDLSFNKLDGRIPEQLLSVTAL----ALLNLSYNRL 668
              +LE+LD+S N L+  +P   +                NR+
Sbjct: 178 LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 9e-10
 Identities = 57/269 (21%), Positives = 95/269 (35%), Gaps = 60/269 (22%)

Query: 4   LSKLTHLDLSFCVLTIEQRTF-DLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
           +++ + L L+   L+    +  D L   +T L +     T  +LI   SL  L +++  L
Sbjct: 58  INQFSELQLNRLNLS----SLPDNLPPQITVLEI-----TQNALI---SLPELPASLEYL 105

Query: 63  DLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCN 122
           D    R+    P+      +L+ L ++ N QLT  LP+           LL  ++     
Sbjct: 106 DACDNRLS-TLPELP---ASLKHLDVDNN-QLT-MLPE--------LPALLEYINADNNQ 151

Query: 123 FTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTL 182
            T  +P    +L     ++  +N  T  LP        L   D+S N         L +L
Sbjct: 152 LT-MLPELPTSL---EVLSVRNNQLT-FLP---ELPESLEALDVSTNL--------LESL 195

Query: 183 PSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNL 242
           P+             P+       +    R  EN I   IP +   L     + L  N L
Sbjct: 196 PA------------VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFT 271
           S  IR      L +       +   + F+
Sbjct: 243 SSRIRES----LSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 20/170 (11%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
              + L HLD+    LT       +L      L  ++     ++++ P    +L      
Sbjct: 117 ELPASLKHLDVDNNQLT-------MLPELPALLEYINADNNQLTML-PELPTSL----EV 164

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L +   ++    P+      +L+ L ++ N  L   LP     +     +          
Sbjct: 165 LSVRNNQLTF-LPE---LPESLEALDVSTN-LLES-LPAVPVRN-HHSEETEIFFRCREN 217

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF 171
             T  IP +I +L     I    N  + ++   +S  +    +     YF
Sbjct: 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.8 bits (236), Expect = 2e-21
 Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 21/255 (8%)

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           L + + I   K+ +   +    L   +  +      +          L NL  L+L  N 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQ 74

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           ++          L K+  L+LS N L       N+S    L S+K L      IT+    
Sbjct: 75  IT---DLAPLKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLR 360
           L     L +L L  N+I    + S   G  +L  L + N  ++ +  L     +TTL   
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 361 NNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGN 419
           +N+I   S L   P+   + + NN++S  + P + + S+L  ++L++  ++   P    N
Sbjct: 182 DNKISDISPLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTIT-NQPVFYNN 238

Query: 420 FSTELITLHLKNNSL 434
                  +   + + 
Sbjct: 239 NLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 21/265 (7%)

Query: 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLL 311
             L     +    +++       +   +  L  +  L      +T   G ++    L  L
Sbjct: 16  PALANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGL 68

Query: 312 DLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQG-SIL 369
           +L +N+I      +       + +L+LS N + ++  +    +I TLDL + +I   + L
Sbjct: 69  ELKDNQIT---DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 370 VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHL 429
               + +VL +  N+++  I P +  L++LQYLS+ +  +S  + P L N  ++L TL  
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP-LANL-SKLTTLKA 180

Query: 430 KNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCW 489
            +N +   I    A+  +L  + L +N++    P  LA    L +V +    I++    +
Sbjct: 181 DDNKIS-DI-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 490 LGSLHELKILVLRSNRFYGPLCNSN 514
             +L    ++   S     P   S+
Sbjct: 237 NNNLVVPNVVKGPSGAPIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 59/290 (20%), Positives = 109/290 (37%), Gaps = 25/290 (8%)

Query: 133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192
            L  A +IA   ++ T  +    + L  +TT    G          +  L +L+ ++L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 193 NMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFS 252
           N +     L  L   + ++ L  N ++     +   L ++  LDL+S  ++        +
Sbjct: 73  NQITDLAPLKNLTK-ITELELSGNPLKNVSAIA--GLQSIKTLDLTSTQITD---VTPLA 126

Query: 253 KLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLD 312
            L  LQ L L  N + + +  A       L +L+ L      +++    L N  +L  L 
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAG------LTNLQYLSIGNAQVSDLTP-LANLSKLTTLK 179

Query: 313 LSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSILVP 371
             +N+I      S      +LI++ L NN ++ +  L    N+  + L N  I       
Sbjct: 180 ADDNKIS---DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN----Q 232

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS 421
           P      LV  N + G     I   +     + +  NL+  +   + N S
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 25/257 (9%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
             L     +  G +N++     + L+    +T L   GT +     + +  L NL  L L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
             N Q+T         +PL+ L  ++ L++          ++I  L     +   S   T
Sbjct: 71  KDN-QITDL-------APLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT 120

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
              P  ++GLS L    L  N      P  L  L +L  + +    ++    L  L   L
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSK-L 175

Query: 209 QDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
             ++ ++N+I    P +   L NL  + L +N +S        +    L  + L+N ++ 
Sbjct: 176 TTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTIT 230

Query: 269 SFTSSANISIKYSLPSL 285
           +     N ++       
Sbjct: 231 NQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 35/284 (12%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           + L  +T L      +T       +     L  L  L L    ++ + P   L   + +T
Sbjct: 38  ADLDGITTLSAFGTGVT------TIEGVQYLNNLIGLELKDNQITDLAPLKNL---TKIT 88

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +L+L G  +K      I  L +++ L L    Q+T         +PL  L  L VL +  
Sbjct: 89  ELELSGNPLKN--VSAIAGLQSIKTLDLTST-QITDV-------TPLAGLSNLQVLYLDL 138

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
              T +I   +  LT    ++  +   +   P  ++ LS LTT     N      P  L 
Sbjct: 139 NQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LA 192

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
           +LP+L+ + L  N ++    L    N L  V L    I        F   NL + ++   
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSN-LFIVTLTNQTITN---QPVFYNNNLVVPNVVKG 248

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSL-----LSFTSSANISIK 279
                I     S        +L+ N       +S+T + +++ K
Sbjct: 249 PSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFK 292

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 40/292 (13%), Positives = 99/292 (33%), Gaps = 65/292 (22%)

Query: 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432
            +   +    + ++     +   L  +  LS     ++ TI   +      LI L LK+N
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYL-NNLIGLELKDN 73

Query: 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGS 492
            +   +     N + +  L+L+ N L+      +A    ++ +++    I+D  P  L  
Sbjct: 74  QIT-DL-APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 493 LHELKILVLRSNRFYGPLCNSNITF--PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
           L  L++L L  N+       +NI+       L+ + + + + +          +  + N 
Sbjct: 128 LSNLQVLYLDLNQI------TNISPLAGLTNLQYLSIGNAQVS---------DLTPLAN- 171

Query: 551 DEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL 610
                                           L     +    N+   +I   L +  +L
Sbjct: 172 --------------------------------LSKLTTLKADDNKIS-DISP-LASLPNL 197

Query: 611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN 662
             ++L +N ++ ++     N + L  + L+   +  +      ++    ++ 
Sbjct: 198 IEVHLKNNQIS-DVS-PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 48/295 (16%), Positives = 98/295 (33%), Gaps = 64/295 (21%)

Query: 353 NITTLDLRNNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
           N   +    + +              L      ++  I   +  L++L  L L DN ++ 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT- 76

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
            + P L N  T++  L L  N L+ ++    A    +++LDL S ++    P  LA    
Sbjct: 77  DLAP-LKNL-TKITELELSGNPLK-NV-SAIAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF--PFQALRIIDLSH 529
           L+V+ +  N I++  P  L  L  L+ L + + +       S++T       L  +    
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADD 182

Query: 530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAM 589
           N+ +          + ++ N+ E                                    +
Sbjct: 183 NKISDI------SPLASLPNLIE------------------------------------V 200

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
               N+     P  L N  +L ++ L++ ++T        N+     +       
Sbjct: 201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 36/249 (14%), Positives = 83/249 (33%), Gaps = 62/249 (24%)

Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481
              I +    +++   +  T A+   + +L      +       +     L  + +  N 
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74

Query: 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF--PFQALRIIDLSHNEFTGFLPRR 539
           I+D  P  L +L ++  L L  N         N++     Q+++ +DL+  + T      
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITDV---- 122

Query: 540 IFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE 599
               +  + N+                                      +    N+    
Sbjct: 123 --TPLAGLSNLQV------------------------------------LYLDLNQIT-N 143

Query: 600 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALA 659
           I   L    +L+ L++ +  ++ ++     N++ L +L    NK+   I   L S+  L 
Sbjct: 144 ISP-LAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKADDNKISD-ISP-LASLPNLI 198

Query: 660 LLNLSYNRL 668
            ++L  N++
Sbjct: 199 EVHLKNNQI 207

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.0 bits (223), Expect = 8e-20
 Identities = 60/315 (19%), Positives = 105/315 (33%), Gaps = 53/315 (16%)

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNS--------TFQLVNLT 233
                S++     ++   DL Q  + ++ + L+   +R     S           +  L 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 234 ILDLSSNNLSGAIRFDQFS-KLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
            L L +  ++G             L  L+L N S  +  +      ++  P LKVL  A 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 293 CNITEFPG-FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
            +   F    +R    L  LDLS+N   G      +                  +    +
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA------------------LCPLKF 200

Query: 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
             +  L LRN  +                     SG       +   LQ L LS N+L  
Sbjct: 201 PTLQVLALRNAGM------------------ETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG-PLPRSLAKCI 470
                  ++ ++L +L+L    L+          + L  LDL+ N+L+  P P  L    
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK---QVPKGLPAKLSVLDLSYNRLDRNPSPDELP--- 296

Query: 471 KLEVVNVGKNMISDS 485
           ++  +++  N   DS
Sbjct: 297 QVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 47/256 (18%), Positives = 78/256 (30%), Gaps = 28/256 (10%)

Query: 79  RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRA- 137
            L  L +    + S++     +    S L+EL L +         TG+ P  +   T   
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN------LEVTGTAPPPLLEATGPD 122

Query: 138 -TEIAFASNHFTGQLPHHVSGLSY----LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK 192
              +   +  +  +         +    L    ++  +        +   P+L ++DLS 
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 193 NMLNGPIDLFQLP-----NSLQDVRLEENEIR---GTIPNSTFQLVNLTILDLSSNNLSG 244
           N   G   L          +LQ + L    +    G         V L  LDLS N+L  
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRN 304
           A          +L  L+LS   L                 L VL  +Y  +   P     
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKG-------LPAKLSVLDLSYNRLDRNP-SPDE 294

Query: 305 SEELYLLDLSNNRIQG 320
             ++  L L  N    
Sbjct: 295 LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.9 bits (210), Expect = 5e-18
 Identities = 56/277 (20%), Positives = 83/277 (29%), Gaps = 33/277 (11%)

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP--GWKSLIDLDL 338
           SL  L        ++ +F   ++ S  L  L +   RI  RI        G   L +L L
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIK-SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 339 SNNFMTHIELHP-----WMNITTLDLRNNRIQGSILVPP-------PSTKVLLVSNNKLS 386
            N  +T     P       ++  L+LRN                  P  KVL ++     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 387 GKIPPSICSLSSLQYLSLSDNNLSGTIP----PCLGNFS--TELITLHLKNNSLEGHIHD 440
                 +    +L  L LSDN   G        C   F     L   +    +  G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 441 TFANASHLRSLDLNSNKLEG-PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL 499
             A    L+ LDL+ N L       S     +L  +N+    +            +L +L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVL 279

Query: 500 VLRSNRFYGPLCNSNITFP--FQALRIIDLSHNEFTG 534
            L  NR            P     +  + L  N F  
Sbjct: 280 DLSYNRL------DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 59/325 (18%), Positives = 96/325 (29%), Gaps = 79/325 (24%)

Query: 356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPS---ICSLSSLQYLSLSDNNLSGT 412
            +D   +  Q + ++   S K L V   ++  +I      +  +S LQ L+L +  ++GT
Sbjct: 51  RVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110

Query: 413 IPPCLGNFS-TELITLHLKNNSLEGHIHDTFA----NASHLRSLDLNSNKLEGPLPRSLA 467
            PP L   +  +L  L+L+N S                  L+ L +              
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS--------- 161

Query: 468 KCIKLEVVNVGKNMISDSFPC-WLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRI 524
                            +F C  +     L  L L  N   G   L ++     F  L++
Sbjct: 162 ----------------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 525 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV 584
           + L +                A         L+ +                         
Sbjct: 206 LALRNAGMET-PSGVCSALAAARVQ------LQGL------------------------- 233

Query: 585 MFRAMDFSRNRFHGEIPEVLGNF-KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNK 643
                D S N           ++   L  LNLS   L             L  LDLS+N+
Sbjct: 234 -----DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNR 285

Query: 644 LDGRIPEQLLSVTALALLNLSYNRL 668
           LD R P     +  +  L+L  N  
Sbjct: 286 LD-RNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 55/376 (14%), Positives = 99/376 (26%), Gaps = 85/376 (22%)

Query: 275 NISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLI 334
           + S  +S P         C              L  L    +        +D     SL 
Sbjct: 12  SCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK 71

Query: 335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI- 393
            L +    +    L   + +  +                  + L + N +++G  PP + 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGI---------------SGLQELTLENLEVTGTAPPPLL 116

Query: 394 -CSLSSLQYLSLSDNNLSGT---IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
             +   L  L+L + + +     +          L  L +          +       L 
Sbjct: 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG- 508
           +LDL+ N   G      A C                          L++L LR+      
Sbjct: 177 TLDLSDNPELGERGLISALC--------------------PLKFPTLQVLALRNAGMETP 216

Query: 509 PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI 568
               S +      L+ +DLSHN                + +                   
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS------------------- 257

Query: 569 TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF 628
                               ++ S      ++P+ L     L VL+LS+N L    P S 
Sbjct: 258 --------------------LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NP-SP 292

Query: 629 ENMTALESLDLSFNKL 644
           + +  + +L L  N  
Sbjct: 293 DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 43/277 (15%), Positives = 73/277 (26%), Gaps = 40/277 (14%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           +     L  L +    +        L    ++ L                          
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGL-------------------------Q 98

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +L L    + G  P  +       +  LNL +                    L VL I  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS----GLSYLTTFDLSGNYFQ---G 173
            +        +      + +  + N   G+     +        L    L     +   G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNGPID--LFQLPNSLQDVRLEENEIRGTIPNSTFQLVN 231
              +       L  +DLS N L           P+ L  + L    ++  +P        
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--K 275

Query: 232 LTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
           L++LDLS N L    R     +L ++  L L  N  L
Sbjct: 276 LSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 47/308 (15%), Positives = 86/308 (27%), Gaps = 64/308 (20%)

Query: 333 LIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPP------PSTKVLLVSNNKLS 386
           L  +D   +     ++   +++  L +R  RI   IL            + L + N +++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 387 GKIPPSI--CSLSSLQYLSLSDNNLSGT---IPPCLGNFSTELITLHLKNNSLEGHIHDT 441
           G  PP +   +   L  L+L + + +     +          L  L +          + 
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 442 FANASHLRSLDLNSNKLEGPLPRSLAKCI-------KLEVVNVGKNMISDSFPCWLGSLH 494
                 L +LDL+ N   G      A C         L + N G    S        +  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 495 ELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG 554
           +L+ L L  N         +  +P   L  ++LS       +P+ +   +  +       
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGLKQ-VPKGLPAKLSVL------- 279

Query: 555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLN 614
                                              D S NR     P        +  L+
Sbjct: 280 -----------------------------------DLSYNRLD-RNPSPDE-LPQVGNLS 302

Query: 615 LSHNSLTG 622
           L  N    
Sbjct: 303 LKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 46/269 (17%), Positives = 77/269 (28%), Gaps = 32/269 (11%)

Query: 416 CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEV 474
           C  NFS          N L     + +     L  L    +          + K + L+ 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 475 VNVGKNMISDSFPCW---LGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531
           + V    I          +  +  L+ L L +    G      +      L I++L +  
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 532 FTG---FLPRRIFPSMEAMKNVD-EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFR 587
           +     +L          +K +   Q                        +  ++     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNF----------------SCEQVRVFPALS 176

Query: 588 AMDFSRNRFHGEIPE----VLGNFKSLKVLNLSHN---SLTGNIPVSFENMTALESLDLS 640
            +D S N   GE           F +L+VL L +    + +G           L+ LDLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 641 FNKLDGRIPEQLLS-VTALALLNLSYNRL 668
            N L            + L  LNLS+  L
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 33/219 (15%), Positives = 61/219 (27%), Gaps = 25/219 (11%)

Query: 4   LSKLTHLDLSFCVLT--IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
           +S L  L L    +T        +    +L  L+L ++               L   +  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTG-YLPKSNWSSPLRELDLLSVLDIGF 120
           L +          + +   P L  L L+ N +L    L  +        L +L++ + G 
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSWL 179
              +G          +   +  + N              S L + +LS    +  VP  L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL 272

Query: 180 F--------------------TLPSLLSIDLSKNMLNGP 198
                                 LP + ++ L  N     
Sbjct: 273 PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 80/468 (17%), Positives = 150/468 (32%), Gaps = 114/468 (24%)

Query: 255 KKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE-----FPGFLRNSEELY 309
             +Q LD+    L   + +    +   L   +V+R   C +TE         LR +  L 
Sbjct: 3   LDIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 310 LLDLSNNRIQGR----ISKSDSPGWKSLIDLDLSNNFMTHI-------ELHPWMNITTLD 358
            L+L +N +       + +        +  L L N  +T          L     +  L 
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 359 LRNNRIQGS--------ILVPPPSTKVLLVSNNKLSGKIPPSICSL----SSLQYLSLSD 406
           L +N +  +        +L P    + L +    LS      + S+       + L++S+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 407 NNLSGT----IPPCLGNFSTELITLHLKNNSL--EG--HIHDTFANASHLRSLDLNSNKL 458
           N+++      +   L +   +L  L L++  +  +    +    A+ + LR L L SNKL
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 459 EGPLPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNS 513
                  L   +      L  + + +  I+      L         VLR+          
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-------VLRAK--------- 283

Query: 514 NITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ 573
                 ++L+ + L+ NE             E  +                   +   + 
Sbjct: 284 ------ESLKELSLAGNEL----------GDEGAR------------------LLCETLL 309

Query: 574 GHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLGNFKSLKVLNLSHNSLT--GNIPVS 627
               QL+ +             F          VL   + L  L +S+N L   G   + 
Sbjct: 310 EPGCQLESL-------WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 628 F---ENMTALESLDLSFNKLD----GRIPEQLLSVTALALLNLSYNRL 668
               +  + L  L L+   +       +   LL+  +L  L+LS N L
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.4 bits (225), Expect = 3e-19
 Identities = 78/437 (17%), Positives = 144/437 (32%), Gaps = 94/437 (21%)

Query: 161 LTTFDLSGNYFQ-GGVPSWLFTLPSLLSIDLSKNMLNGPID------LFQLPNSLQDVRL 213
           + + D+             L  L     + L    L             ++  +L ++ L
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNL 63

Query: 214 EENEIRGT----------IPNSTFQLVNLTILDLSSNNLS----GAIRFDQFSKLKKLQF 259
             NE+              P+       +  L L +  L+    G +       L  LQ 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCK-----IQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQE 117

Query: 260 LDLSNNSLLSFTSSANIS--IKYSLPSLKVLRFAYCNITE-----FPGFLRNSEELYLLD 312
           L LS+N L        +   +      L+ L+  YC+++          LR   +   L 
Sbjct: 118 LHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 313 LSNNRIQGR----ISKSDSPGWKSLIDLDLSNNFMTHI-------ELHPWMNITTLDLRN 361
           +SNN I       + +        L  L L +  +T          +    ++  L L +
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236

Query: 362 NRIQGS--------ILVPPPSTKVLLVSNNKLSGK----IPPSICSLSSLQYLSLSDNNL 409
           N++           +L P    + L +    ++ K    +   + +  SL+ LSL+ N L
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

Query: 410 SGT----IPPCLGNFSTELITLHLKNNSLEGHIHDTFANA----SHLRSLDLNSNKLEGP 461
                  +   L     +L +L +K+ S        F++       L  L +++N+LE  
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 462 LPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNIT 516
             R L + +      L V+ +    +SDS    L +        L +N            
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-------TLLAN------------ 397

Query: 517 FPFQALRIIDLSHNEFT 533
               +LR +DLS+N   
Sbjct: 398 ---HSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 76/494 (15%), Positives = 144/494 (29%), Gaps = 119/494 (24%)

Query: 229 LVNLTILDLSSNNLS--GAIRFDQ-FSKLKKLQFLDLSNNSLLSFTSSANI---SIKYSL 282
           L    ++ L    L+                L  L+L +N L       +     ++   
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGLQTPS 84

Query: 283 PSLKVLRFAYCNITE-----FPGFLRNSEELYLLDLSNNRIQGR----ISKSDSPGWKSL 333
             ++ L    C +T          LR    L  L LS+N +       + +        L
Sbjct: 85  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144

Query: 334 IDLDLSNNFMTHI-------ELHPWMNITTLDLRNNRIQGS--------ILVPPPSTKVL 378
             L L    ++          L    +   L + NN I  +        +   P   + L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 379 LVSNNKLSGK----IPPSICSLSSLQYLSLSDNNLSGT----IPPCLGNFSTELITLHLK 430
            + +  ++      +   + S +SL+ L+L  N L       + P L + S+ L TL + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 431 NNSLE----GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK-----LEVVNVGKNM 481
              +     G +         L+ L L  N+L     R L + +      LE + V    
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 541
            + +      S       VL  N               + L  + +S+N           
Sbjct: 325 FTAACCSHFSS-------VLAQN---------------RFLLELQISNNRLE-------- 354

Query: 542 PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE-- 599
                    D         G      +   +      L+ +         +         
Sbjct: 355 ---------DA--------GV---RELCQGLGQPGSVLRVL-------WLADCDVSDSSC 387

Query: 600 --IPEVLGNFKSLKVLNLSHNSLTGNIPVSF-----ENMTALESLDLSFNKLDGRIPEQL 652
             +   L    SL+ L+LS+N L     +       +    LE L L        + ++L
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447

Query: 653 LSV----TALALLN 662
            ++     +L +++
Sbjct: 448 QALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 8e-16
 Identities = 94/539 (17%), Positives = 160/539 (29%), Gaps = 125/539 (23%)

Query: 5   SKLTHLDLSFCVLTIEQRTFDLLA--SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
             +  LD+    L+ + R  +LL        + L   G T        S L ++  + +L
Sbjct: 3   LDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 63  DLGGTRIKGNFPDDI---FRLPNLQILFLNLNS-QLT----GYLPKSNWSSPLRELDLLS 114
           +L    +       +    + P+ +I  L+L +  LT    G L     SS LR L  L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL-----SSTLRTLPTLQ 116

Query: 115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYF--Q 172
            L +       +    +                             L    L        
Sbjct: 117 ELHLSDNLLGDAGLQLLCE-------GLLDPQCR------------LEKLQLEYCSLSAA 157

Query: 173 GGVP--SWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
              P  S L   P    + +S N +     +  L   L+D                    
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPC----------------- 199

Query: 231 NLTILDLSSNNLS--GAIRFDQ-FSKLKKLQFLDLSNNSLLSFTSSANI-SIKYSLPSLK 286
            L  L L S  ++           +    L+ L L +N L     +     + +    L+
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 287 VLRFAYCNITE-----FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
            L    C IT          LR  E L  L L+ N +          G + L +  L   
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG-------DEGARLLCETLLEPG 312

Query: 342 FMTHIELHPWMNITTLDLRNNRIQ-------GSILVPPPSTKVLLVSNNKLSGKIPPSIC 394
                       + +L +++            S+L        L +SNN+L       +C
Sbjct: 313 C----------QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 395 -----SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
                  S L+ L L+D +        + + S   +   L  N               LR
Sbjct: 363 QGLGQPGSVLRVLWLADCD--------VSDSSCSSLAATLLAN-------------HSLR 401

Query: 450 SLDLNSNKLEGPLPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSL----HELKIL 499
            LDL++N L       L + ++     LE + +     S+     L +L      L+++
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 8e-16
 Identities = 67/409 (16%), Positives = 120/409 (29%), Gaps = 102/409 (24%)

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-------LHPWMNITTL 357
           S ++  LD+    +         P  +    + L +  +T          L     +  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 358 DLRNNRIQGS--------ILVPPPSTKVLLVSNNKLSGK----IPPSICSLSSLQYLSLS 405
           +LR+N +           +  P    + L + N  L+G     +  ++ +L +LQ L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 406 DNNLSGT----IPPCLGNFSTELITLHLKNNSL--EG--HIHDTFANASHLRSLDLNSNK 457
           DN L       +   L +    L  L L+  SL       +          + L +++N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 458 LEGPLPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
           +     R L + +K     LE + +    ++      L         ++ S         
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-------IVASK-------- 226

Query: 513 SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAM 572
                   +LR + L  N+                             G      +   +
Sbjct: 227 -------ASLRELALGSNKLGDV-------------------------GM---AELCPGL 251

Query: 573 QGHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGN----- 623
                +L+ +                +    +  VL   +SLK L+L+ N L        
Sbjct: 252 LHPSSRLRTL-------WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304

Query: 624 IPVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYNRL 668
                E    LESL +                L     L  L +S NRL
Sbjct: 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 66/393 (16%), Positives = 108/393 (27%), Gaps = 91/393 (23%)

Query: 1   MSHLSKLTHLDLSFCVLTIE--QRTFDLLASNLTKLSLLHLGATNMS---LIKPFSLLNL 55
           +  L  L  L LS  +L     Q   + L     +L  L L   ++S        S+L  
Sbjct: 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 56  SSTMTDLDLGGTRIKGNFPD-------DIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR 108
                +L +    I     +          +    Q+  L L S         +    + 
Sbjct: 169 KPDFKELTVSNNDIN----EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSG 168
               L  L +G                   E+     H            S L T  +  
Sbjct: 225 SKASLRELALGSNKLGDV---------GMAELCPGLLH----------PSSRLRTLWIWE 265

Query: 169 NYFQ----GGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPN 224
                   G +   L    SL  + L+ N L G      L  +L +            P 
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNEL-GDEGARLLCETLLE------------PG 312

Query: 225 STFQLVNLTILDLSSNNLS--GAIRFDQ-FSKLKKLQFLDLSNNSL----LSFTSSANIS 277
                  L  L + S + +      F    ++ + L  L +SNN L    +         
Sbjct: 313 CQ-----LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG--- 364

Query: 278 IKYSLPSLKVLRFAYCNITEFPGF------LRNSEELYLLDLSNNRIQGRISKSDSPGWK 331
           +      L+VL  A C++++          L  +  L  LDLSNN +          G  
Sbjct: 365 LGQPGSVLRVLWLADCDVSDS-SCSSLAATLLANHSLRELDLSNNCL-------GDAGIL 416

Query: 332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRI 364
            L++                  +  L L +   
Sbjct: 417 QLVESVRQPGC----------LLEQLVLYDIYW 439

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 48/230 (20%), Positives = 88/230 (38%), Gaps = 18/230 (7%)

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
               +  +L K  +   +   +L + +  +    ++I+ ++      L N+T L L+ N 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIK-SVQGIQ-YLPNVTKLFLNGNK 79

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           L+        + LK L +L L  N +   +S  +      L  LK L   +  I++  G 
Sbjct: 80  LT---DIKPLANLKNLGWLFLDENKVKDLSSLKD------LKKLKSLSLEHNGISDING- 129

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLR 360
           L +  +L  L L NN+I      +       L  L L +N ++ I  L     +  L L 
Sbjct: 130 LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 361 NNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
            N I     L    +  VL + + +   K      +L     +  +D +L
Sbjct: 187 KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 52/255 (20%), Positives = 96/255 (37%), Gaps = 22/255 (8%)

Query: 213 LEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTS 272
                I+    +           +L   +++ A+     ++L  +  +  +N+ +    S
Sbjct: 9   TVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDI---KS 60

Query: 273 SANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKS 332
              I     LP++  L      +T+    L N + L  L L  N+++     S     K 
Sbjct: 61  VQGIQ---YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK---DLSSLKDLKK 113

Query: 333 LIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQG-SILVPPPSTKVLLVSNNKLSGKIP 390
           L  L L +N ++ I  L     + +L L NN+I   ++L        L + +N++S  I 
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIV 172

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
           P +  L+ LQ L LS N++S  +   L      L  L L +        +  +N     +
Sbjct: 173 P-LAGLTKLQNLYLSKNHIS-DLRA-LAGL-KNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 451 LDLNSNKLEGPLPRS 465
           +      L  P   S
Sbjct: 229 VKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 48/264 (18%), Positives = 91/264 (34%), Gaps = 41/264 (15%)

Query: 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLL 311
               +    +L   S+       +   +  L S+  +     +I    G ++    +  L
Sbjct: 21  DAFAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKL 73

Query: 312 DLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSILV 370
            L+ N++   I    +   K+L  L L  N +  +  L     + +L L +N I      
Sbjct: 74  FLNGNKLT-DIKPLANL--KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS----- 125

Query: 371 PPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 430
                             I   +  L  L+ L L +N ++  I   L    T+L TL L+
Sbjct: 126 -----------------DING-LVHLPQLESLYLGNNKIT-DITV-LSRL-TKLDTLSLE 164

Query: 431 NNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
           +N +   I    A  + L++L L+ N +     R+LA    L+V+ +      +      
Sbjct: 165 DNQIS-DI-VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 491 GSLHELKILVLRSNRFYGPLCNSN 514
            +L     +         P   S+
Sbjct: 221 SNLVVPNTVKNTDGSLVTPEIISD 244

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 42/234 (17%)

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTLDLR 360
                E    +L    +   +++++     S+  +  +N+ +  ++ +    N+T L L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN 76

Query: 361 NNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGN 419
            N++     L    +   L +  NK+   +   +  L  L+ LSL  N +S  I   L +
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVH 132

Query: 420 FSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK 479
              +L +L+L NN +   I    +  + L +L L  N++   +P  LA   KL+ + + K
Sbjct: 133 L-PQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 480 NMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533
           N ISD     L +L  LK                        L +++L   E  
Sbjct: 188 NHISD-----LRALAGLK-----------------------NLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 42/298 (14%), Positives = 89/298 (29%), Gaps = 65/298 (21%)

Query: 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432
           P     +     +  +I     + +     +L   +++  +          +  +   N+
Sbjct: 2   PLGSETITVPTPIK-QIFS-DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNS 56

Query: 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGS 492
            ++  +        ++  L LN NKL    P  LA    L  + + +N + D     L  
Sbjct: 57  DIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKD 110

Query: 493 LHELKILVLRSNRFYGPLCNSNITF--PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNV 550
           L +LK L L  N        S+I        L  + L +N+ T          +  +   
Sbjct: 111 LKKLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKIT---------DITVLSR- 154

Query: 551 DEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL 610
                                           L     +    N+   +I   L     L
Sbjct: 155 --------------------------------LTKLDTLSLEDNQIS-DIVP-LAGLTKL 180

Query: 611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           + L LS N ++ ++  +   +  L+ L+L   +   +      ++     +  +   L
Sbjct: 181 QNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 55/260 (21%), Positives = 89/260 (34%), Gaps = 48/260 (18%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
               +    +L   +++     + LN   ++  +    + IK      I  LPN+  LFL
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
           N N +LT          PL  L  L  L +            + +L              
Sbjct: 76  NGN-KLTDI-------KPLANLKNLGWLFLDENKV-----KDLSSL-------------- 108

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
                    L  L +  L  N       + L  LP L S+ L  N +     L +L   L
Sbjct: 109 -------KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITVLSRLTK-L 158

Query: 209 QDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
             + LE+N+I   I      L  L  L LS N++S        + LK L  L+L +   L
Sbjct: 159 DTLSLEDNQIS-DIVPLA-GLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECL 213

Query: 269 SFTSSANISIKYSLPSLKVL 288
           +   +   ++     ++K  
Sbjct: 214 NKPINHQSNLV-VPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 52/298 (17%), Positives = 95/298 (31%), Gaps = 75/298 (25%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           + L+ +  +  +   +        +     L  ++ L L    ++ IKP +         
Sbjct: 43  NELNSIDQIIANNSDIK------SVQGIQYLPNVTKLFLNGNKLTDIKPLA--------- 87

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
                              L NL  LFL+ N ++          S L++L  L  L +  
Sbjct: 88  ------------------NLKNLGWLFLDEN-KVKDL-------SSLKDLKKLKSLSLEH 121

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
                   + I  L                       L  L +  L  N       + L 
Sbjct: 122 NGI-----SDINGL---------------------VHLPQLESLYLGNNKITD--ITVLS 153

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
            L  L ++ L  N ++  + L  L   LQ++ L +N I      +   L NL +L+L S 
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLAGLTK-LQNLYLSKNHISDLRALAG--LKNLDVLELFSQ 210

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
                   +  S L     +  ++ SL++    ++    Y  P++K     + N   F
Sbjct: 211 ECLN-KPINHQSNLVVPNTVKNTDGSLVTPEIISD-DGDYEKPNVKWHLPEFTNEVSF 266

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 22/201 (10%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           + +L  +T L L+   LT       L  +NL  L  L L    +  +     L     + 
Sbjct: 64  IQYLPNVTKLFLNGNKLT---DIKPL--ANLKNLGWLFLDENKVKDLSSLKDL---KKLK 115

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L L    I     + +  LP L+ L+L  N ++T         + L  L  L  L +  
Sbjct: 116 SLSLEHNGISD--INGLVHLPQLESLYLGNN-KITDI-------TVLSRLTKLDTLSLED 165

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
              +  I   +  LT+   +  + NH +      ++GL  L   +L          +   
Sbjct: 166 NQIS-DIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 181 TLPSLLSIDLSKNMLNGPIDL 201
            L    ++  +   L  P  +
Sbjct: 222 NLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 38/253 (15%), Positives = 75/253 (29%), Gaps = 65/253 (25%)

Query: 418 GNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV 477
           G   +E IT+      +           +     +L    +   +     +   ++ +  
Sbjct: 1   GPLGSETITVPTPIKQIFS-----DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIA 53

Query: 478 GKNMISDSFPCWLGSLHELKILVLRSNRF--YGPLCNSNITFPFQALRIIDLSHNEFTGF 535
             + I       +  L  +  L L  N+     PL N       + L  + L  N+    
Sbjct: 54  NNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLAN------LKNLGWLFLDENKVK-- 103

Query: 536 LPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR 595
                   + ++K+                                 L   +++    N 
Sbjct: 104 -------DLSSLKD---------------------------------LKKLKSLSLEHNG 123

Query: 596 FHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV 655
                   L +   L+ L L +N +T +I      +T L++L L  N++       L  +
Sbjct: 124 I--SDINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQI--SDIVPLAGL 177

Query: 656 TALALLNLSYNRL 668
           T L  L LS N +
Sbjct: 178 TKLQNLYLSKNHI 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.1 bits (211), Expect = 1e-18
 Identities = 45/255 (17%), Positives = 85/255 (33%), Gaps = 50/255 (19%)

Query: 203 QLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLD 261
            LP S Q ++L E  +R TIP+  F  L N++ + +S +     +    F  L K+  ++
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 262 LSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG--FLRNSEELYLLDLSNNRIQ 319
           + N   L++     +     LP LK L      +  FP    + +++  ++L++++N   
Sbjct: 87  IRNTRNLTYIDPDALK---ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLL 379
             I  +   G        L N               TL L NN                 
Sbjct: 144 TSIPVNAFQG--------LCNE------------TLTLKLYNNGFT-------------- 169

Query: 380 VSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHI 438
                    +     + + L  + L+ N     I     G   +    L +   S+    
Sbjct: 170 --------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221

Query: 439 HDTFANASHLRSLDL 453
                +   L + + 
Sbjct: 222 SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 43/245 (17%), Positives = 78/245 (31%), Gaps = 47/245 (19%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL 112
           +L  +   L L  T ++   P   F  LPN+  ++++++  L   L     S     L  
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ-QLE----SHSFYNLSK 81

Query: 113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGN--- 169
           ++ ++I        I             A                L  L    +      
Sbjct: 82  VTHIEIRNTRNLTYIDPD----------AL-------------KELPLLKFLGIFNTGLK 118

Query: 170 YFQGGVPSWLFTLPSLLSIDLSKNMLNGPI--DLFQ-LPNSLQDVRLEENEIRGTIPNST 226
            F     + +++      ++++ N     I  + FQ L N    ++L  N    ++    
Sbjct: 119 MFPDL--TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175

Query: 227 FQLVNLTILDLSSNNLSGAIRFDQFSKLK-KLQFLDLSNNSLLSFTSSANISIKYSLPSL 285
           F    L  + L+ N     I  D F  +      LD+S  S+ +  S         L  L
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-------LEHL 228

Query: 286 KVLRF 290
           K L  
Sbjct: 229 KELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 15/194 (7%)

Query: 182 LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSS 239
            PS  ++ L +  L   P   F    ++  + +  +     + + +F  L  +T +++ +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN-ITEF 298
                 I  D   +L  L+FL + N  L  F     +    S     +L       +T  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY---STDIFFILEITDNPYMTSI 146

Query: 299 PG--FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS-NNFMTHIELHPWMN-- 353
           P   F     E   L L NN     +      G   L  + L+ N ++T I+   +    
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 354 --ITTLDLRNNRIQ 365
              + LD+    + 
Sbjct: 205 SGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 37/279 (13%), Positives = 79/279 (28%), Gaps = 51/279 (18%)

Query: 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
               C     +   ++  ++   IP    +      TL L    L       F+N  ++ 
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNIS 58

Query: 450 SLDLNSN-KLEGPLPRSLAKCIKLEVVNVGKN-MISDSFPCWLGSLHELKILVLRSNRFY 507
            + ++ +  L+     S     K+  + +     ++   P  L  L  LK L + +    
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 567
               +    +      I++++ N +   +P   F  +                       
Sbjct: 119 M-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET------------------- 158

Query: 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV- 626
                                +    N F   +     N   L  + L+ N     I   
Sbjct: 159 -------------------LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 627 SFENM-TALESLDLSFNKLDGRIPEQLL-SVTALALLNL 663
           +F  + +    LD+S   +   +P + L  +  L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 50/270 (18%), Positives = 84/270 (31%), Gaps = 90/270 (33%)

Query: 2   SHLSKLTHLDLSFCVL--TIEQRTFDLLASNLTKLSLLHLGATNM-SLIKPFSLLNLSST 58
           S+L  ++ + +S  V    +E  +F     NL+K++ + +  T   + I P +L  L   
Sbjct: 52  SNLPNISRIYVSIDVTLQQLESHSFY----NLSKVTHIEIRNTRNLTYIDPDALKELPL- 106

Query: 59  MTDLDLGGTRIKGNFPDDIF--RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVL 116
           +  L +  T +K  FPD           IL +  N  +T                     
Sbjct: 107 LKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMT--------------------- 144

Query: 117 DIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVP 176
                    SIP                N F G L +         T  L  N F   V 
Sbjct: 145 ---------SIP---------------VNAFQG-LCNE------TLTLKLYNNGFT-SVQ 172

Query: 177 SWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ--LVNLTI 234
            + F    L ++ L+KN                        +   I    F       ++
Sbjct: 173 GYAFNGTKLDAVYLNKN----------------------KYLT-VIDKDAFGGVYSGPSL 209

Query: 235 LDLSSNNLSGAIRFDQFSKLKKLQFLDLSN 264
           LD+S  +++ A+       LK+L   +   
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIARNTWT 238

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 18/224 (8%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSWLFT-LP 183
            IP ++        +  + N     L  +       L   DLS    Q  +    +  L 
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLS 76

Query: 184 SLLSIDLSKNML-NGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNN 241
            L ++ L+ N + +  +  F   +SLQ +   E  +  ++ N     L  L  L+++ N 
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV----LRFAYCNITE 297
           +      + FS L  L+ LDLS+N +     S   +    L  + +    L  +   +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 298 FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN 341
                     L  L L  N+++  +         SL  + L  N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 55/243 (22%), Positives = 87/243 (35%), Gaps = 52/243 (21%)

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
            +   LDLS N L   +    F    +LQ LDLS   +             ++       
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI------------QTIE------ 68

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
                     G  ++   L  L L+ N IQ  ++     G  SL  L      +  +E  
Sbjct: 69  ---------DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 350 PWMNITT---LDLRNNRIQGSILVPPPST-------KVLLVSNNKLSGKIPPSI-CSLSS 398
           P  ++ T   L++ +N IQ       P         + L +S+NK+   I  +    L  
Sbjct: 119 PIGHLKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQ 174

Query: 399 LQY----LSLSDNNLSGTIPPCLGNF-STELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
           +      L LS N ++  I P  G F    L  L L  N L+      F   + L+ + L
Sbjct: 175 MPLLNLSLDLSLNPMN-FIQP--GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 454 NSN 456
           ++N
Sbjct: 232 HTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 57/279 (20%), Positives = 81/279 (29%), Gaps = 79/279 (28%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLH 428
           P STK L +S N L   +      S   LQ L LS   +  TI    G +   + L TL 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLSTLI 82

Query: 429 LKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPC 488
           L  N ++      F+  S L+ L      L      SL                +     
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNL-----ASLE---------------NFPI-- 120

Query: 489 WLGSLHELKILVLRSNRFYGPLCNSNITFP--FQ---ALRIIDLSHNEFTGFLPRRIFPS 543
             G L  LK L +  N         +   P  F     L  +DLS N+    +       
Sbjct: 121 --GHLKTLKELNVAHNLI------QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171

Query: 544 MEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV 603
           +  M  ++    L                      +  I             F       
Sbjct: 172 LHQMPLLNLSLDL------------------SLNPMNFI---------QPGAFKE----- 199

Query: 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFN 642
                 LK L L  N L       F+ +T+L+ + L  N
Sbjct: 200 ----IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 40/213 (18%), Positives = 81/213 (38%), Gaps = 25/213 (11%)

Query: 353 NITTLDLRNNRIQGSILVPP------PSTKVLLVSNNKLSGKIPPSICS-LSSLQYLSLS 405
           +   LDL  N ++    +        P  +VL +S  ++   I       LS L  L L+
Sbjct: 29  STKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 406 DNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL-EGPLPR 464
            N +  ++     +  + L  L     +L    +    +   L+ L++  N +    LP 
Sbjct: 85  GNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 465 SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNIT------FP 518
             +    LE +++  N I   +   L  LH++ +L L  +     L  + +       F 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-----LSLNPMNFIQPGAFK 198

Query: 519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
              L+ + L  N+    +P  IF  + +++ + 
Sbjct: 199 EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 5e-12
 Identities = 49/266 (18%), Positives = 77/266 (28%), Gaps = 82/266 (30%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
               +L  LDLS C +  IE   +     +L+ LS L L    +  +   +   LSS   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSL-Q 103

Query: 61  DLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            L    T +  +  +     L  L+ L +  N  +                         
Sbjct: 104 KLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQ------------------------ 137

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWL 179
                 S                   +F+         L+ L   DLS N  Q  +    
Sbjct: 138 ------SFKL--------------PEYFSN--------LTNLEHLDLSSNKIQ-SIYCTD 168

Query: 180 FTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSS 239
                                L Q+P     + L  N +   I    F+ + L  L L +
Sbjct: 169 LR------------------VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNN 265
           N L  ++    F +L  LQ + L  N
Sbjct: 210 NQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 55/271 (20%), Positives = 86/271 (31%), Gaps = 69/271 (25%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           NL  +  +LDL    ++       F  P LQ+L L+   ++                   
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQ------------------ 65

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
                       +I             A+               LS+L+T  L+GN  Q 
Sbjct: 66  ------------TIEDG----------AY-------------QSLSHLSTLILTGNPIQ- 89

Query: 174 GVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLV 230
            +    F+ L SL  +   +  L            +L+++ +  N I+       F  L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQF----LDLSNNSLLSFTSSANISIKYSLPSLK 286
           NL  LDLSSN +  +I       L ++      LDLS N +      A     +    LK
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLK 203

Query: 287 VLRFAYCNITEFP-GFLRNSEELYLLDLSNN 316
            L      +   P G       L  + L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 601 PEVLGNFKSLKVLNLSHNSLTGNIPVS--FENMTALESLDLSFNKLDGRIPEQ----LLS 654
              +G+ K+LK LN++HN +  +  +   F N+T LE LDLS NK+   I       L  
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQ 174

Query: 655 VTALAL-LNLSYNRLWGRIPRG 675
           +  L L L+LS N +   I  G
Sbjct: 175 MPLLNLSLDLSLNPM-NFIQPG 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.5 bits (199), Expect = 6e-17
 Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 25/239 (10%)

Query: 179 LFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
              L + +  +L K  +   +   +L   +Q+   + + I+ ++        NL  L LS
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSG-VQNFNGDNSNIQ-SLAGMQ-FFTNLKELHLS 71

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
            N +S          L KL+ L ++ N L +     +         L  L      + + 
Sbjct: 72  HNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIPS-------ACLSRLFLDNNELRDT 121

Query: 299 PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWMNITTL 357
              L + + L +L + NN+++   S         L  LDL  N +T+   L     +  +
Sbjct: 122 DS-LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177

Query: 358 DLRNNRIQGSILVPPPSTKVLLVSNN--KLSGKI--PPSICSLSSLQYLSLSDNNLSGT 412
           DL   +    +  P      L ++N      G+   P  I +  S     +       T
Sbjct: 178 DLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 16/215 (7%)

Query: 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLL 311
             L      +L   S+       ++  +  L  ++       NI    G ++    L  L
Sbjct: 16  PGLANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKEL 68

Query: 312 DLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQG-SILV 370
            LS+N+I   +S         L +L ++ N + ++   P   ++ L L NN ++    L+
Sbjct: 69  HLSHNQIS-DLSPLKD--LTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLI 125

Query: 371 PPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK 430
              + ++L + NNKL   I   +  LS L+ L L  N ++            ++  + L 
Sbjct: 126 HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTGGLTRL--KKVNWIDLT 180

Query: 431 NNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465
                              ++     +   P   S
Sbjct: 181 GQKCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFS-LLNLSSTMT 60
             LS + + +     +     +   +    T L  LHL    +S + P   L  L     
Sbjct: 38  KELSGVQNFNGDNSNIQ----SLAGM-QFFTNLKELHLSHNQISDLSPLKDLTKL----E 88

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +L +   R+K     ++  +P+  +  L L++              L  L  L +L I  
Sbjct: 89  ELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDT------DSLIHLKNLEILSIRN 137

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGN 169
                SI   +G L++   +    N  T      ++ L  +   DL+G 
Sbjct: 138 NKLK-SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           M   + L  L LS   ++        L  +LTKL  L +    +  +       L    +
Sbjct: 59  MQFFTNLKELHLSHNQIS----DLSPL-KDLTKLEELSVNRNRLKNLNGIPSACL----S 109

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
            L L    ++    D +  L NL+IL +  N +L            L  L  L VLD+  
Sbjct: 110 RLFLDNNELRD--TDSLIHLKNLEILSIRNN-KLKSI-------VMLGFLSKLEVLDLHG 159

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFT 148
              T +    +  L +   I        
Sbjct: 160 NEIT-NT-GGLTRLKKVNWIDLTGQKCV 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 63/254 (24%)

Query: 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS 266
           S  +V  ++  +   +P       + TIL LS N L             +L  L+L    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66

Query: 267 LLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSD 326
           L        + +  +LP L  L  ++  +   P   +    L +LD+S NR+      S 
Sbjct: 67  LTK------LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-----SL 115

Query: 327 SPGW-KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKL 385
             G  + L +L                    L L+ N ++                    
Sbjct: 116 PLGALRGLGEL------------------QELYLKGNELK-------------------- 137

Query: 386 SGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTF 442
              +PP +      L+ LSL++NNL+  +P   G  +    L TL L+ NSL       F
Sbjct: 138 --TLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLDTLLLQENSLYTIPKGFF 192

Query: 443 ANASHLRSLDLNSN 456
            +   L    L+ N
Sbjct: 193 GSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 61/236 (25%), Positives = 87/236 (36%), Gaps = 49/236 (20%)

Query: 182 LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSS 239
           + S L ++  K  L   P DL   P     + L EN +  T   +T      LT L+L  
Sbjct: 9   VASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDR 64

Query: 240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP 299
             L+   +      L  L  LDLS+N L S           +LP+L VL  ++  +T  P
Sbjct: 65  AELT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-----TLPALTVLDVSFNRLTSLP 116

Query: 300 -GFLRNSEELYLLDLSNNRIQGRISKSDSPGW----KSLIDLDLSNNFMTHIE---LHPW 351
            G LR   EL  L L  N ++     +  PG       L  L L+NN +T +    L+  
Sbjct: 117 LGALRGLGELQELYLKGNELK-----TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
            N+ TL L+ N +                        IP        L +  L  N
Sbjct: 172 ENLDTLLLQENSLYT----------------------IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 7e-13
 Identities = 50/190 (26%), Positives = 66/190 (34%), Gaps = 15/190 (7%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L    T L L    +       +     L  L L+   +LT  L        L  LDL 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQVDGTLPVLGTLDLS 85

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQ 172
                   N   S+P     L   T +  + N  T  LP     GL  L    L GN  +
Sbjct: 86  H-------NQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137

Query: 173 GGVPSWLFT-LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLV 230
             +P  L T  P L  + L+ N L   P  L     +L  + L+EN +  TIP   F   
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 231 NLTILDLSSN 240
            L    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 12/157 (7%)

Query: 353 NITTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNN 408
           +   ++     +     +P   P  T +L +S N L      +     + L  L+L    
Sbjct: 11  SHLEVNCDKRNLTA---LPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE 66

Query: 409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
           L+  +          L TL L +N L+  +         L  LD++ N+L      +L  
Sbjct: 67  LT-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505
             +L+ + +  N +    P  L    +L+ L L +N 
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 44/195 (22%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
              ++LT L+L    LT + +        L  L  L L    +  + P     L +  T 
Sbjct: 52  MPYTRLTQLNLDRAELT-KLQVDG----TLPVLGTLDLSHNQLQSL-PLLGQTLPAL-TV 104

Query: 62  LDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           LD+   R+  + P      L  LQ L+L  N +L                          
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGN-ELK------------------------- 137

Query: 121 CNFTGSIPTSI-GNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSW 178
                ++P  +     +  +++ A+N+ T +LP  + +GL  L T  L  N     +P  
Sbjct: 138 -----TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 179 LFTLPSLLSIDLSKN 193
            F    L    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 60/329 (18%), Positives = 102/329 (31%), Gaps = 95/329 (28%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
                 +S   ++    NL+  +PP   +   +   LHL  N L      T    + L  
Sbjct: 5   EVSKV-ASHLEVNCDKRNLT-ALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           L+L+  +L            KL+V                G+L  L  L L  N+     
Sbjct: 60  LNLDRAELT-----------KLQV---------------DGTLPVLGTLDLSHNQL---- 89

Query: 511 CNSNITFPFQ---ALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 567
              ++    Q   AL ++D+S N  T  LP      +                       
Sbjct: 90  --QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLG---------------------- 124

Query: 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPE-VLGNFKSLKVLNLSHNSLTGNIPV 626
                     +LQ+       +    N     +P  +L     L+ L+L++N+LT  +P 
Sbjct: 125 ----------ELQE-------LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPA 165

Query: 627 S-FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN---------RLWGRIPRGN 676
                +  L++L L  N L   IP+       L    L  N              + + N
Sbjct: 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDN 223

Query: 677 QFNTFENDSYIGNIHLCGEPLTVRCSNDG 705
             N +     +    +     +V+C N  
Sbjct: 224 AENVYVWKQGVDVKAMTSNVASVQCDNSD 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 47/172 (27%), Positives = 70/172 (40%), Gaps = 16/172 (9%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
           LP+    + L  N +       T   L NL  L LS N+L+  I  + F  +  L++LDL
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGR 321
           S+N L +            L +L+VL     +I         +  +L  L LS N+I  R
Sbjct: 96  SSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-R 150

Query: 322 ISK---SDSPGWKSLIDLDLSNNFMTHIELH-----PWMNITTLDLRNNRIQ 365
                  D      L+ LDLS+N +  + L      P      L L NN ++
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 11/168 (6%)

Query: 159 SYLTTFDLSGNYFQGGVPSWLFT-LPSLLSIDLSKNMLNG-PIDLF-QLPNSLQDVRLEE 215
           SY    DLS N        W  T L +L S+ LS N LN    + F  +PN L+ + L  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSS 97

Query: 216 NEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSA 274
           N +  T+    F  L  L +L L +N++   +  + F  + +LQ L LS N +  F    
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 275 NISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYL--LDLSNNRIQ 319
                  LP L +L  +   + + P   L+         L L NN ++
Sbjct: 156 IKDGN-KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 6e-12
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNIT---TLDLRNNRIQ-- 365
           LDLS+N +    ++       +L  L LS+N +  I    ++ +     LDL +N +   
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103

Query: 366 -GSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSGTIPPCLGNFS-- 421
              +     + +VLL+ NN +   +  +    ++ LQ L LS N +S   P         
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV--ELIKDG 159

Query: 422 ---TELITLHLKNNSLEGHIHDTFANASHL--RSLDLNSN 456
               +L+ L L +N L+                 L L++N
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 34/186 (18%)

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI--CSLSSLQYLSLSDNNLS 410
               LDL +N +                       ++        L++L  L LS N+L+
Sbjct: 40  YTALLDLSHNNLS----------------------RLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 411 GTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK 468
             I      F     L  L L +N L       F++   L  L L +N +      +   
Sbjct: 78  -FISS--EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 469 CIKLEVVNVGKNMIS----DSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRI 524
             +L+ + + +N IS    +        L +L +L L SN+            P      
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 525 IDLSHN 530
           + L +N
Sbjct: 194 LYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 46/209 (22%), Positives = 72/209 (34%), Gaps = 52/209 (24%)

Query: 355 TTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSI--CSLSSLQYLSLSDNNL 409
             L     ++     VP   P  T +L +S+N LS ++        L++L  L LS N+L
Sbjct: 21  NILSCSKQQLPN---VPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC 469
           +  I                          + F    +LR LDL+SN L        +  
Sbjct: 77  N-FISS------------------------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQA-------- 521
             LEV+ +  N I          + +L+ L L  N+           FP +         
Sbjct: 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI--------SRFPVELIKDGNKLP 163

Query: 522 -LRIIDLSHNEFTGFLPRRIFPSMEAMKN 549
            L ++DLS N+    LP      + A   
Sbjct: 164 KLMLLDLSSNKLK-KLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 590 DFSRNRFHGEIPE-VLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGR 647
           D S N       E       +L  L LSHN L   I   +F  +  L  LDLS N L   
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-T 102

Query: 648 IPEQLLS-VTALALLNLSYNRLWGRIPRG 675
           + E L S + AL +L L  N +   + R 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
             +  L +LDLS   L  +++  F     +L  L +L L   ++ ++   +  +++  + 
Sbjct: 85  VPVPNLRYLDLSSNHLHTLDEFLFS----DLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQ 139

Query: 61  DLDLGGTRIKGNFPDDIF----RLPNLQILFLNLN 91
            L L   +I   FP ++     +LP L +L L+ N
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           + L+ L  L LS   L  I    F      +  L  L L + ++  +  F   +L + + 
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFV----PVPNLRYLDLSSNHLHTLDEFLFSDLQA-LE 115

Query: 61  DLDLGGTRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
            L L    I      + F  +  LQ L+L+ N Q++   P         +L  L +LD+ 
Sbjct: 116 VLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN-QIS-RFPVELIKD-GNKLPKLMLLDLS 171

Query: 120 FCNFTGSIPTSIGNLTR 136
                    T +  L  
Sbjct: 172 SNKLKKLPLTDLQKLPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 7   LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGG 66
              LDLS   L+  +  +    + LT L  L L   +++ I   + + + + +  LDL  
Sbjct: 41  TALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSS 97

Query: 67  TRIKGNFPDDIFR-LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG 125
             +     + +F  L  L++L L  N  +   + ++       ++  L  L +     + 
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNN-HIV-VVDRNA----FEDMAQLQKLYLSQNQIS- 149

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
             P                           + L  L   DLS N  +    + L  LP+ 
Sbjct: 150 RFPVE----------LI----------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189

Query: 186 LSIDLS 191
           +   L 
Sbjct: 190 VKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRI 648
           D S N  H     +  + ++L+VL L +N +   +   +FE+M  L+ L LS N++  R 
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 649 PEQ----LLSVTALALLNLSYNRLWGRIPRG 675
           P +       +  L LL+LS N+L  ++P  
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKL-KKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 40/253 (15%), Positives = 69/253 (27%), Gaps = 69/253 (27%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG-HIHDTFANASHLR 449
           P+ C   +   LS S   L   +P    +  +    L L +N+L       T    ++L 
Sbjct: 13  PANCL-CASNILSCSKQQLP-NVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLH 67

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
           SL L+ N L      +      L  +++  N +                  L    F   
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH----------------TLDEFLFSD- 110

Query: 510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 569
                     QAL ++ L +N     + R  F  M  ++ +     L             
Sbjct: 111 ---------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY----LSQN---------- 146

Query: 570 VAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE 629
                   Q+ +                            L +L+LS N L        +
Sbjct: 147 --------QISRF---------PVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 630 NMTALESLDLSFN 642
            + A     L  +
Sbjct: 185 KLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 599 EIPEVLGNFKSLKVLNLSHNSLTGNIP--VSFENMTALESLDLSFNKLDGRIPEQLLS-V 655
            +P+ L       +L+LSHN+L+  +    +   +T L SL LS N L+  I  +    V
Sbjct: 32  NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 656 TALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLT 698
             L  L+LS N L   +        F +   +  + L    + 
Sbjct: 88  PNLRYLDLSSNHL-HTLDEF----LFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKP--FSLLNLSST 58
           S L  L  L L    +  +++  F+    ++ +L  L+L    +S          N    
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164

Query: 59  MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNS 92
           +  LDL   ++K     D+ +LP      L L++
Sbjct: 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.3 bits (198), Expect = 3e-16
 Identities = 44/247 (17%), Positives = 81/247 (32%), Gaps = 20/247 (8%)

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNN-FMTHIELHPWM 352
            +TE P  L        L     +++  I K    G+  L  +++S N  +  IE   + 
Sbjct: 20  KVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 353 NITTLD----LRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSL 404
           N+  L      + N +           P+ + LL+SN  +   +P            L +
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135

Query: 405 SDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
            DN    TI        S E + L L  N ++   +  F           ++N LE    
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 464 RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR 523
                     ++++ +  I       L +L +L+     + +    L          AL 
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK------LVALM 249

Query: 524 IIDLSHN 530
              L++ 
Sbjct: 250 EASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 51/319 (15%), Positives = 95/319 (29%), Gaps = 51/319 (15%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L     +L    T+++           +L+ + ++ N  L   +     +     L  L
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIE----ADVFSNLPKL 81

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
             + I   N    I                        P     L  L    +S    + 
Sbjct: 82  HEIRIEKANNLLYIN-----------------------PEAFQNLPNLQYLLISNTGIKH 118

Query: 174 GVPSWLFT-LPSLLSIDLSKN--MLNGPIDLFQ-LPNSLQDVRLEENEIRGTIPNSTFQL 229
            +P          + +D+  N  +     + F  L      + L +N I+  I NS F  
Sbjct: 119 -LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSA--------------- 274
             L  L+LS NN    +  D F        LD+S   + S  S                 
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236

Query: 275 -NISIKYSLPSLKVLRFAY-CNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKS 332
             +     L +L      Y  +   F  + R   EL+ +   +   Q     + + G +S
Sbjct: 237 KKLPTLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRS 296

Query: 333 LIDLDLSNNFMTHIELHPW 351
            +  D  +++    ++   
Sbjct: 297 SLAEDNESSYSRGFDMTYT 315

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 48/346 (13%), Positives = 103/346 (29%), Gaps = 85/346 (24%)

Query: 353 NITTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNN 408
           +      + +++     +P   P +   L     KL   I          L+ + +S N+
Sbjct: 10  SNRVFLCQESKVTE---IPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQND 65

Query: 409 LSGTIPPCLGNFS--TELITLHL-KNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS 465
           +   I      FS   +L  + + K N+L     + F N  +L+ L +++  ++      
Sbjct: 66  VLEVIEA--DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII 525
               ++  ++++  N               + I  +  N F G L             I+
Sbjct: 124 KIHSLQKVLLDIQDN---------------INIHTIERNSFVG-LSFE--------SVIL 159

Query: 526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVM 585
            L+ N     +    F                                    QL ++ + 
Sbjct: 160 WLNKNGIQE-IHNSAFNGT---------------------------------QLDELNLS 185

Query: 586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645
                   N       +V        +L++S   +        EN+  L +      K  
Sbjct: 186 ------DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-- 237

Query: 646 GRIPEQLLSVTALALLNLSYNR----LWGRIPRGNQFNTFENDSYI 687
            ++P  L  + AL   +L+Y            + ++ +   N S +
Sbjct: 238 -KLP-TLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSIL 281

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE-LHPWM 352
           +    P      +      L  +     I+++      SL  + L+N  +T +  +    
Sbjct: 13  DNVNIP--DSTFKAYLNGLLGQSSTA-NITEAQM---NSLTYITLANINVTDLTGIEYAH 66

Query: 353 NITTLDLRNNRIQG-SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
           NI  L + N      + +    + + L +    ++    P++  L+SL  L +S +    
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
           +I   +     ++ ++ L  N     I         L+SL++  + +       +    K
Sbjct: 127 SILTKINTL-PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 472 LEVVNVGKNMISD 484
           L  +      I  
Sbjct: 183 LNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 31/165 (18%), Positives = 69/165 (41%), Gaps = 10/165 (6%)

Query: 156 SGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE 215
           + ++ LT   L+           +    ++  + ++         +  L N L+ +R+  
Sbjct: 41  AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSN-LERLRIMG 97

Query: 216 NEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN 275
            ++      +   L +LT+LD+S +    +I   + + L K+  +DLS N  ++     +
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAIT-----D 151

Query: 276 ISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQG 320
           I    +LP LK L   +  + ++ G + +  +L  L   +  I G
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 36/187 (19%)

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV 287
           Q+ +LT + L++ N++             ++ L ++N      T+   IS    L +L+ 
Sbjct: 42  QMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHA---TNYNPIS---GLSNLER 92

Query: 288 LRFAYCNIT-EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS-NNFMTH 345
           LR    ++T +    L     L LLD+S++     I    +     +  +DLS N  +T 
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITD 151

Query: 346 IE-LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSL 404
           I  L     + +L+++ + +                  +   G     I     L  L  
Sbjct: 152 IMPLKTLPELKSLNIQFDGV------------------HDYRG-----IEDFPKLNQLYA 188

Query: 405 SDNNLSG 411
               + G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
           S         LG ++ + I    + +L    T + L    +       I    N++ L +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSL----TYITLANINVTD--LTGIEYAHNIKDLTI 73

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
           N     T Y       +P+  L  L  L I   + T     ++  LT  T +  + +   
Sbjct: 74  NNI-HATNY-------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL 208
             +   ++ L  + + DLS N     +   L TLP L S+++  + ++    +   P  L
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPK-L 183

Query: 209 QDVRLEENEI 218
             +      I
Sbjct: 184 NQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 19/170 (11%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLA-SNLTKLSLLHLGATNMSLIKPFSLLNLSSTM 59
            + ++ LT++ L+   +T      DL        +  L +   + +   P S L   S +
Sbjct: 40  EAQMNSLTYITLANINVT------DLTGIEYAHNIKDLTINNIHATNYNPISGL---SNL 90

Query: 60  TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
             L + G  +  +   ++  L +L +L ++ +      +      + +  L  ++ +D+ 
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSIL-----TKINTLPKVNSIDLS 144

Query: 120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGN 169
           +      I   +  L     +    +         +     L        
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 25/177 (14%), Positives = 66/177 (37%), Gaps = 16/177 (9%)

Query: 365 QGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTEL 424
           Q ++ +P  + K  L      S     +   ++SL Y++L++ N++      +      +
Sbjct: 12  QDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYA-HNI 68

Query: 425 ITLHLKNNSLEGHIHD--TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMI 482
             L + N     H  +    +  S+L  L +    +      +L+    L ++++  +  
Sbjct: 69  KDLTINNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 483 SDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITF--PFQALRIIDLSHNEFTGFLP 537
            DS    + +L ++  + L  N        ++I        L+ +++  +    +  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGA-----ITDIMPLKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 14/65 (21%), Positives = 32/65 (49%)

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL 661
             +    +L+ L +    +T +   +   +T+L  LD+S +  D  I  ++ ++  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 662 NLSYN 666
           +LSYN
Sbjct: 142 DLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
                    +    L    SL +L++SH++   +I      +  + S+DLS+N     I 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI- 152

Query: 650 EQLLSVTALALLNLSYNRL 668
             L ++  L  LN+ ++ +
Sbjct: 153 MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           D S +     I   +     +  ++LS+N    +I    + +  L+SL++ F+ +     
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG 176

Query: 650 EQLLSVTALALLNLSYNRL 668
             +     L  L      +
Sbjct: 177 --IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL 663
           +    ++K L +++   T   P     ++ LE L +    +       L  +T+L LL++
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 664 SYNRL 668
           S++  
Sbjct: 120 SHSAH 124

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPSWLFT-LP 183
           +IP++I       ++   SN  +  LP      L+ L    L+ N  Q  +P+ +F  L 
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85

Query: 184 SLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNN 241
           +L ++ ++ N L   PI +F    +L ++RL+ N+++ ++P   F  L  LT L L  N 
Sbjct: 86  NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-G 300
           L  ++    F KL  L+ L L NN L      A       L  LK L+     +   P G
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD----KLTELKTLKLDNNQLKRVPEG 199

Query: 301 FLRNSEELYLLDLSNN 316
              + E+L +L L  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.2 bits (183), Expect = 9e-15
 Identities = 59/230 (25%), Positives = 86/230 (37%), Gaps = 54/230 (23%)

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
            +   LDL SN LS ++    F +L KL+ L L++N L +    A I  +  L +L+ L 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTL--PAGIFKE--LKNLETLW 91

Query: 290 FAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPG-WKSLIDLDLSNNFMTHIE 347
                +   P G       L  L L  N+++     S  P  + SL  L           
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-----SLPPRVFDSLTKL----------- 135

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSD 406
                  T L L  N +Q                       +P  +   L+SL+ L L +
Sbjct: 136 -------TYLSLGYNELQ----------------------SLPKGVFDKLTSLKELRLYN 166

Query: 407 NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
           N L   +P    +  TEL TL L NN L+      F +   L+ L L  N
Sbjct: 167 NQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQ-- 365
           LDL +N++   +          L  L L++N +  +         N+ TL + +N++Q  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 366 -GSILVPPPSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFS-- 421
              +     +   L +  N+L   +PP +  SL+ L YLSL  N L  ++P   G F   
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK--GVFDKL 156

Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
           T L  L L NN L+      F   + L++L L++N+L
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 35/210 (16%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
           +P   + + L+ N++  ++P+  F  L  L +L L+ N L   +    F +LK L+ L +
Sbjct: 35  IPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGR 321
           ++N L +        +   L +L  LR     +   P     +  +L  L L  N +Q  
Sbjct: 93  TDNKLQALPI----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147

Query: 322 ISKSDSPGWKSLIDLDLSNNFMTHIEL---HPWMNITTLDLRNNRIQGSILVPPPSTKVL 378
           + K       SL +L L NN +  +          + TL L NN+++             
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK------------- 194

Query: 379 LVSNNKLSGKIPPSI-CSLSSLQYLSLSDN 407
                    ++P     SL  L+ L L +N
Sbjct: 195 ---------RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 19/181 (10%)

Query: 336 LDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGSILVPP------PSTKVLLVSNNKLS 386
           LDL +N ++ +     H    +  L L +N++Q    +P        + + L V++NKL 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQ 98

Query: 387 GKIPPSI-CSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFA 443
             +P  +   L +L  L L  N L  ++PP    F   T+L  L L  N L+      F 
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQSLPKGVFD 154

Query: 444 NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503
             + L+ L L +N+L+     +  K  +L+ + +  N +         SL +LK+L L+ 
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 504 N 504
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 44/197 (22%)

Query: 2   SHLSKLTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
             L+KL  L L+   L  +    F      L  L  L +    +  +       L +   
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFK----ELKNLETLWVTDNKLQALPIGVFDQLVNL-A 112

Query: 61  DLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
           +L L   ++K + P  +F  L  L  L L  N +L                         
Sbjct: 113 ELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN-ELQ------------------------ 146

Query: 120 FCNFTGSIPTSI-GNLTRATEIAFASNHFTGQLPHHV-SGLSYLTTFDLSGNYFQGGVPS 177
                 S+P  +   LT   E+   +N    ++P      L+ L T  L  N  +  VP 
Sbjct: 147 ------SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPE 198

Query: 178 WLFT-LPSLLSIDLSKN 193
             F  L  L  + L +N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 56/280 (20%), Positives = 87/280 (31%), Gaps = 78/280 (27%)

Query: 382 NNKLSGKIPPSICSLS-SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD 440
           N  L  K    +CS + +   +  S   L+  IP    N   +   L L++N L      
Sbjct: 1   NEAL-CKKDGGVCSCNNNKNSVDCSSKKLT-AIPS---NIPADTKKLDLQSNKLSSLPSK 55

Query: 441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILV 500
            F   + LR L LN NKL+  LP                   +  F      L  L+ L 
Sbjct: 56  AFHRLTKLRLLYLNDNKLQT-LP-------------------AGIF----KELKNLETLW 91

Query: 501 LRSNR--------FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE 552
           +  N+        F               L  + L  N+    LP R+F S+  +  +  
Sbjct: 92  VTDNKLQALPIGVFDQL----------VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS- 139

Query: 553 QGRLEYMGGAFYDESITVAMQGHDFQLQKI-------LVMFRAMDFSRNRFHGEIPEVLG 605
              L                     +LQ +       L   + +    N+          
Sbjct: 140 ---L------------------GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLD 645
               LK L L +N L      +F+++  L+ L L  N  D
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 54/290 (18%), Positives = 99/290 (34%), Gaps = 52/290 (17%)

Query: 231 NLTILDLSSNNLS--GAIRFDQFSKLKK----LQFLDLSNNSLLSFTSSANIS--IKYSL 282
            +T LDLS NNL     +              +  L+LS NSL  F +S  +   +    
Sbjct: 23  GVTSLDLSLNNLYSISTVEL--IQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIP 79

Query: 283 PSLKVLRFAYCNITE------FPGFLRNSEELYLLDLSNNRIQGR----ISKSDSPGWKS 332
            ++  L  +   ++                 + +LDL  N    +      ++ S    S
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 333 LIDLDLSNNFMTH---IEL-----HPWMNITTLDLRNNRIQ-------GSILVPPPST-K 376
           +  L+L  N +      EL         N+ +L+LR N +           L   P++  
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 377 VLLVSNNKLSGKIPPSICSL-----SSLQYLSLSDNNLSGTIPPCLGNF---STELITLH 428
            L +S N L  K    +  +     + +  L+L  N L G     L         L T++
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 429 LKNNSLEG-------HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
           L  + ++         +   F N   +  +D N  ++       ++  I+
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 53/340 (15%), Positives = 103/340 (30%), Gaps = 69/340 (20%)

Query: 183 PSLLSIDLSKNML--NGPIDLFQL----PNSLQDVRLEENEIRGT----------IPNST 226
             + S+DLS N L     ++L Q     P S+  + L  N +                + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 227 FQLVNLTILDLSSNNLS--GAIRFDQF--SKLKKLQFLDLSNNSLLSFTSSANIS--IKY 280
                +T L+LS N LS   +    +   +    +  LDL  N   S  SS+        
Sbjct: 82  -----VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSN 135

Query: 281 SLPSLKVLRFAYCNITEF------PGFLRNSEELYLLDLSNNRIQGR----ISKSDSPGW 330
              S+  L     ++                  +  L+L  N +  +    ++K  +   
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 331 KSLIDLDLSNNFMTH---IEL-----HPWMNITTLDLRNNRIQ-------GSILVPPPST 375
            S+  LDLS N +      EL         ++ +L+L  N +          +       
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 376 KVLLVSNNKLSGK-------IPPSICSLSSLQYLSLSDNNL--SGTIPPC--LGNFSTEL 424
           + + +  + +          +  +  ++  +  +  +   +  S +IP    +   S + 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 425 ITLHLKNNSL-----EGHIHDTFANASHLRSLDLNSNKLE 459
               L N  L          +       LR        L 
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 59/357 (16%), Positives = 115/357 (32%), Gaps = 56/357 (15%)

Query: 301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLR 360
           F      +  LDLS N +        S     LI    +             ++T+L+L 
Sbjct: 17  FTSIPHGVTSLDLSLNNL-------YSISTVELIQAFANTP----------ASVTSLNLS 59

Query: 361 NNRIQ-------GSILVPPPST-KVLLVSNNKLSGKIPPSICSL-----SSLQYLSLSDN 407
            N +          IL   P+    L +S N LS K    +         ++  L L  N
Sbjct: 60  GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Query: 408 NLSGT----IPPCLGNFSTELITLHLKNNSLEGHIHDTFANA-----SHLRSLDLNSNKL 458
           + S            N    + +L+L+ N L     D          +++ SL+L  N L
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 459 EGPLPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSLHE-----LKILVLRSNRFYG 508
                  LAK +      +  +++  N++       L  +       +  L L  N  +G
Sbjct: 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239

Query: 509 PLCN--SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE 566
           P       +    + L+ + L ++        +      A  N+ +   ++  G   +  
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299

Query: 567 ---SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSL 620
               I+  ++    +     ++ + + F++   H    E L     L+    +   L
Sbjct: 300 HSIPISNLIRELSGKADVPSLLNQCLIFAQK--HQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 50/378 (13%), Positives = 103/378 (27%), Gaps = 94/378 (24%)

Query: 353 NITTLDLRNNRIQGS--------ILVPPPSTKVLLVSNNKLSGKIPPSICSL-----SSL 399
            +T+LDL  N +               P S   L +S N L  K    +  +     +++
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 400 QYLSLSDNNLSGT----IPPCLGNFSTELITLHLKNNSLEGHIHDTFANA-----SHLRS 450
             L+LS N LS      +   L      +  L L  N         F  A     + + S
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 451 LDLNSNKLEGPLPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505
           L+L  N L       L + +      +  +N+  N ++      L               
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF------------ 190

Query: 506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
               L +   +     +  +DLS N                     +             
Sbjct: 191 ----LASIPAS-----VTSLDLSANLLG-----------------LK--------SY--- 213

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLGNFKSLKVLNLSHNSLT 621
             +          +  +       +   N  HG     +  +  + K L+ + L ++ + 
Sbjct: 214 AELAYIFSSIPNHVVSL-------NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266

Query: 622 G-------NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR 674
                    +  +F N+  +  +D +  ++       + ++            L  +   
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLI 326

Query: 675 GNQFNTFENDSYIGNIHL 692
             Q +    +       L
Sbjct: 327 FAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 46/311 (14%), Positives = 93/311 (29%), Gaps = 75/311 (24%)

Query: 397 SSLQYLSLSDNNLSGT----IPPCLGNFSTELITLHLKNNSLEGHIHDTFANA-----SH 447
             +  L LS NNL       +     N    + +L+L  NSL     D          ++
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 448 LRSLDLNSNKLEGPLPRSLAKCIK-----LEVVNVGKNMISDSFPCWLGSL-----HELK 497
           + SL+L+ N L       L K +      + V+++G N  S                 + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 498 ILVLRSNRFYGP----LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQ 553
            L LR N         L    +      +  ++L  N                     + 
Sbjct: 142 SLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNNLA-----------------SK- 182

Query: 554 GRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE----IPEVL-GNFK 608
                         +   +      +  +       D S N    +    +  +      
Sbjct: 183 -------NC---AELAKFLASIPASVTSL-------DLSANLLGLKSYAELAYIFSSIPN 225

Query: 609 SLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-------TA 657
            +  LNL  N L G    N+ +  +++  L+++ L ++ +     EQ  ++         
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 658 LALLNLSYNRL 668
           + L++ +   +
Sbjct: 286 IILVDKNGKEI 296

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 47/298 (15%), Positives = 87/298 (29%), Gaps = 57/298 (19%)

Query: 231 NLTILDLSSNNLS--GAIRF-DQFSKLKKLQFLDLSNNSLLSFTSSANISIKY------S 281
           ++  + LS N +    A    +  +  K L+  + S+            +++        
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 282 LPSLKVLRFAYCNITE-----FPGFLRNSEELYLLDLSNNRI------------QGRISK 324
            P L  +R +              FL     L  L L NN +            Q     
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 325 SDSPGWKSLIDLDLSNNF-----MTHI--ELHPWMNITTLDLRNNRIQ--------GSIL 369
             +     L  +    N      M            + T+ +  N I+           L
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 370 VPPPSTKVLLVSNNKLSGK----IPPSICSLSSLQYLSLSDNNLSGT----IPPCLGNFS 421
                 KVL + +N  +      +  ++ S  +L+ L L+D  LS      +        
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 422 -TELITLHLKNNSL--EG--HIHDTFA-NASHLRSLDLNSNKL--EGPLPRSLAKCIK 471
              L TL L+ N +  +    +          L  L+LN N+   E  +   + +   
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 44/343 (12%), Positives = 93/343 (27%), Gaps = 94/343 (27%)

Query: 229 LVNLTI--LDLSSNNLS--GAIRFDQF-SKLKKLQFLDLSNNSLLSFTSSANISIKYSLP 283
           +   +I    L  + ++            +   ++ + LS N++                
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-------------GTE 47

Query: 284 SLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFM 343
           + + L             + + ++L + + S+    GR+        + L+   L     
Sbjct: 48  AARWLSEN----------IASKKDLEIAEFSDIFT-GRVKDEIPEALRLLLQALLKCP-- 94

Query: 344 THIELHPWMNITTLDLRNNRIQ-------GSILVPPPSTKVLLVSNNKLS---------- 386
                     + T+ L +N             L      + L + NN L           
Sbjct: 95  ---------KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 387 ---GKIPPSICSLSSLQYLSLSDNNLSG----TIPPCLGNFSTELITLHLKNNSL----- 434
                +     +   L+ +    N L             +    L T+ +  N +     
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGI 204

Query: 435 EGHIHDTFANASHLRSLDLNSNKL--EG--PLPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
           E  + +  A    L+ LDL  N     G   L  +L     L  + +   ++S       
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR----- 259

Query: 491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533
           G+   +       N                 L+ + L +NE  
Sbjct: 260 GAAAVVDAFSKLENI---------------GLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 63/370 (17%), Positives = 113/370 (30%), Gaps = 112/370 (30%)

Query: 331 KSLIDLDLSNNFMTHIE-------LHPWMNITTLDLRNNRIQ-------GSILVPPPSTK 376
            S+    L  + +T  +       L    ++  + L  N I           +      +
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 377 VLLVSNN---KLSGKIPPSICSLS-------SLQYLSLSDNNLSGTIPPCLGNF---STE 423
           +   S+    ++  +IP ++  L         L  + LSDN    T    L +F    T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 424 LITLHLKNNSL-------------EGHIHDTFANASHLRSLDLNSNKLEGP----LPRSL 466
           L  L+L NN L             E  ++    NA  LRS+    N+LE        ++ 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 467 AKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIID 526
                L  V + +N I        G  H L    L                  Q L+++D
Sbjct: 184 QSHRLLHTVKMVQNGIRPE-----GIEHLLLEG-LAYC---------------QELKVLD 222

Query: 527 LSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMF 586
           L  N FT                           G+    ++ +A++     L+++    
Sbjct: 223 LQDNTFT-----------------HL--------GS---SALAIALKSWP-NLREL---- 249

Query: 587 RAMDFSRNRFHGE----IPEVL--GNFKSLKVLNLSHNSLTGNIPVSF-----ENMTALE 635
                +           + +         L+ L L +N +  +   +      E M  L 
Sbjct: 250 ---GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306

Query: 636 SLDLSFNKLD 645
            L+L+ N+  
Sbjct: 307 FLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 59/371 (15%), Positives = 114/371 (30%), Gaps = 117/371 (31%)

Query: 354 ITTLDLRNNRIQ-------GSILVPPPSTKVLLVSNNKLSGK----IPPSICSLSSLQYL 402
           I    L+ + I         ++L+   S K +++S N +  +    +  +I S   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 403 SLSDN---NLSGTIPPCLGNFS------TELITLHLKNNSL--EG--HIHDTFANASHLR 449
             SD     +   IP  L           +L T+ L +N+        + D  +  + L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 450 SLDLNSNKL-------------EGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHEL 496
            L L++N L             E  + +       L  +  G+N + +            
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK---- 181

Query: 497 KILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL 556
                +S+               + L  + +  N                          
Sbjct: 182 ---TFQSH---------------RLLHTVKMVQNGIR----------------------- 200

Query: 557 EYMGGAFYDESITVAMQ---GHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLGNFKS 609
                    E I   +     +  +L+ +       D   N F       +   L ++ +
Sbjct: 201 --------PEGIEHLLLEGLAYCQELKVL-------DLQDNTFTHLGSSALAIALKSWPN 245

Query: 610 LKVLNLSHNSLT--GNIPVS-----FENMTALESLDLSFNKLDGRIPEQLLSV-----TA 657
           L+ L L+   L+  G   V       EN+  L++L L +N+++      L +V       
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPD 304

Query: 658 LALLNLSYNRL 668
           L  L L+ NR 
Sbjct: 305 LLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 44/302 (14%), Positives = 83/302 (27%), Gaps = 81/302 (26%)

Query: 398 SLQYLSLSDNNLSG----TIPPCLGNFSTELITLHLKNNSL--EG--HIHDTFANASHLR 449
           S++  SL  + ++     ++   L    + +  + L  N++  E    + +  A+   L 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 450 SLDLNSNKL-----EGP-----LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL 499
             + +         E P     L ++L KC KL  V +  N    +    L         
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF------ 117

Query: 500 VLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 559
            L  +                 L  + L +N                      Q     +
Sbjct: 118 -LSKHT---------------PLEHLYLHNNGLG------------------PQA-GAKI 142

Query: 560 GGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLGNFKSLKVLNL 615
             A          +    +  K     R++   RNR          +   + + L  + +
Sbjct: 143 ARAL--------QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 616 SHNSLT-----GNIPVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNLSYN 666
             N +        +         L+ LDL  N         +   L S   L  L L+  
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 667 RL 668
            L
Sbjct: 255 LL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 46/313 (14%), Positives = 88/313 (28%), Gaps = 71/313 (22%)

Query: 1   MSHLSKLTHLDLSFCVLTIE--QRTFDLLASN--LTKLSLLHLGATNMSLIKPFSLLNLS 56
           +     +  + LS   +  E  +   + +AS   L       +    +    P +L  L 
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 57  S------TMTDLDLGGTRIKGNFPDDIFRL----PNLQILFLNLN-------SQLTGYLP 99
                   +  + L          + +         L+ L+L+ N       +++   L 
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 100 KSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLS 159
           +   +   +    L  +  G           + N +   E A            H     
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNR--------LENGS-MKEWAKT-------FQSHRL--- 188

Query: 160 YLTTFDLSGNYFQG-GVPSWLFTL----PSLLSIDLSKNML--NGPIDLFQ-LPN--SLQ 209
            L T  +  N  +  G+   L         L  +DL  N     G   L   L +  +L+
Sbjct: 189 -LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 210 DVRLEENEIR-----------GTIPNSTFQLVNLTILDLSSNNLS--GAIRFDQF--SKL 254
           ++ L +  +              + N       L  L L  N +              K+
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIG-----LQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 255 KKLQFLDLSNNSL 267
             L FL+L+ N  
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 35/282 (12%), Positives = 70/282 (24%), Gaps = 84/282 (29%)

Query: 417 LGNFSTELITLHLKNNSL--EG--HIHDTFANASHLRSLDLNSNKL--EG--PLPRSLAK 468
           +  FS  +    LK +++  E    +         ++ + L+ N +  E    L  ++A 
Sbjct: 1   MARFS--IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS 58

Query: 469 CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLS 528
              LE+                 +L  L +  L                    L  + LS
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKC---------------PKLHTVRLS 102

Query: 529 HNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRA 588
            N F       +   +                                  L+ +      
Sbjct: 103 DNAFGPTAQEPLIDFLSKHTP-----------------------------LEHL------ 127

Query: 589 MDFSRNRF-------------HGEIPEVLGNFKSLKVLNLSHNSLTGN----IPVSFENM 631
                N                  + +   N   L+ +    N L          +F++ 
Sbjct: 128 -YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 632 TALESLDLSFNKLDGR-----IPEQLLSVTALALLNLSYNRL 668
             L ++ +  N +        + E L     L +L+L  N  
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLH 428
           P +   + +  N +   IPP        L+ + LS+N +S  + P    F     L +L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLV 86

Query: 429 LKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPC 488
           L  N +       F     L+ L LN+NK+      +      L ++++  N +      
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 489 WLGSLHELKILVLRSN 504
               L  ++ + L  N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
           LP ++ ++RLE+N I+  IP   F     L  +DLS+N +S  +  D F  L+ L  L L
Sbjct: 30  LPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL 87

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGR 321
             N +         S+   L SL++L      I        ++   L LL L +N++Q  
Sbjct: 88  YGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-T 142

Query: 322 ISKSDSPGWKSLIDLDLSNN 341
           I+K      +++  + L+ N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 353 NITTLDLRNNRIQGSILVPP------PSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLS 405
            IT + L  N I+    +PP         + + +SNN++S ++ P     L SL  L L 
Sbjct: 33  TITEIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 406 DNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP 463
            N ++  +P     F     L  L L  N +     D F +  +L  L L  NKL+    
Sbjct: 89  GNKIT-ELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 464 RSLAKCIKLEVVNVGKN 480
            + +    ++ +++ +N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPV-SFENMTALESLDLSFNKLDGRI 648
              +N      P     +K L+ ++LS+N ++  +   +F+ + +L SL L  NK+   +
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 649 PEQLL-SVTALALLNLSYNRLWGRIPRG 675
           P+ L   + +L LL L+ N++   +   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVD 122

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 5e-11
 Identities = 47/288 (16%), Positives = 84/288 (29%), Gaps = 32/288 (11%)

Query: 3   HLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDL 62
            L+          + T      + +             AT+  L +    +  S+ +   
Sbjct: 308 SLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSE 367

Query: 63  DLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC- 121
                 ++   P++ + L  + IL +     L        + S L+ +D +    +    
Sbjct: 368 LESCKELQELEPENKWCLLTI-ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426

Query: 122 -NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLF 180
             F                +  A    T  +  H+  L  +T  DLS N  +  +P  L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALA 483

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
            L  L  +  S N L           ++  V                 L  L  L L +N
Sbjct: 484 ALRCLEVLQASDNALE----------NVDGVA---------------NLPRLQELLLCNN 518

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
            L  +          +L  L+L  NS L         +   LPS+  +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 15/256 (5%)

Query: 159 SYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEI 218
             L    L+    Q           S     L K+              L    L   + 
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361

Query: 219 RGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISI 278
              + +       L  L+  +              ++ L  L     +L  F++   +  
Sbjct: 362 T-VLQSELESCKELQELEPENKW----CLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 279 KYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDL 338
              + +  +       + E         ++ +L L++  +   +   +      +  LDL
Sbjct: 417 ---MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLEQ--LLLVTHLDL 470

Query: 339 SNNFMTHIE--LHPWMNITTLDLRNNRIQG-SILVPPPSTKVLLVSNNKLSG-KIPPSIC 394
           S+N +  +   L     +  L   +N ++    +   P  + LL+ NN+L        + 
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530

Query: 395 SLSSLQYLSLSDNNLS 410
           S   L  L+L  N+L 
Sbjct: 531 SCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 34/233 (14%), Positives = 70/233 (30%), Gaps = 31/233 (13%)

Query: 144 SNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQ 203
                       +    L   +LS       + S L +   L  ++         + +  
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCL--LTIIL 390

Query: 204 LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL------ 257
           L  +L  +  E+  ++            L  +D         +R     +   L      
Sbjct: 391 LMRALDPLLYEKETLQ--------YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442

Query: 258 -QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN 316
            + L L++  L   T   ++     L  +  L  ++  +   P  L     L +L  S+N
Sbjct: 443 VRVLHLAHKDL---TVLCHLE---QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 317 RIQGRISKSDSPGWKSLIDLDLSNNFMTHIE----LHPWMNITTLDLRNNRIQ 365
            ++   +         L +L L NN +        L     +  L+L+ N + 
Sbjct: 497 ALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 50/331 (15%), Positives = 99/331 (29%), Gaps = 38/331 (11%)

Query: 17  LTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDD 76
           L++       + S +  L L+   A      +     N  S +   DL    +    P  
Sbjct: 257 LSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQH 316

Query: 77  IFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR 136
            F    +     +    +        W       + L   ++     +  + + + +   
Sbjct: 317 TF--RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSV-EKSTVLQSELESCKE 373

Query: 137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLN 196
             E+   +      +   +  L  L     +  YF       +  + +    DL    L 
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLL 431

Query: 197 GPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK 256
               L      ++ + L   ++   + +   QL+ +T LDLS N L         + L+ 
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT-VLCHLE-QLLLVTHLDLSHNRLRALP--PALAALRC 487

Query: 257 LQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN 316
           L+ L  S+N+L +    AN      LP L+ L      + +        + L        
Sbjct: 488 LEVLQASDNALENVDGVAN------LPRLQELLLCNNRLQQSAAI----QPLVSC----- 532

Query: 317 RIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
                           L+ L+L  N +   E
Sbjct: 533 --------------PRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 54/289 (18%), Positives = 86/289 (29%), Gaps = 20/289 (6%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
                + +L  +            P   N  + +    L   SL   +           S
Sbjct: 266 TVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGS 325

Query: 451 LDLNSNKLEGP----LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF 506
                  L         R  A   +L    +            L S  EL+ L   +   
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS-TVLQSELESCKELQELEPEN--- 381

Query: 507 YGPLCNSNITFPFQALRIIDLSHNEFTGFLP-RRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
               C   I    +AL  +         F   + + P   A  +      L        +
Sbjct: 382 --KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 566 ESITVAMQGHDFQLQKI-----LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSL 620
            +    +      L  +     L++   +D S NR    +P  L   + L+VL  S N+L
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 621 TGNIPVSFENMTALESLDLSFNKLDG-RIPEQLLSVTALALLNLSYNRL 668
             N+     N+  L+ L L  N+L      + L+S   L LLNL  N L
Sbjct: 499 E-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 8e-11
 Identities = 58/398 (14%), Positives = 113/398 (28%), Gaps = 47/398 (11%)

Query: 2   SHLSKLTHLDLSFC-VLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNL---SS 57
           +H  K+  L +        + +    LA + T L +L+   T  + I P  L  +     
Sbjct: 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220

Query: 58  TMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLD 117
           ++  + +G   I            NL+       ++  G   K       R+L  L +  
Sbjct: 221 SLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 118 IGFCNFTGSIPTSIG----NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
           +G        P +      +L  A          T      +     L   +        
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLE-------TEDHCTLIQKCPNLEVLETRNVIGDR 332

Query: 174 GVPSWLFTLPSLLSIDLSKNML-------------NGPIDLFQLPNSLQDVRLEENEIR- 219
           G+         L  + + +                 G I L Q    L+ + +  ++I  
Sbjct: 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392

Query: 220 ---GTIPNSTFQLVNLTILDLSSNNLSGAIRFDQ-----FSKLKKLQFLDLSNNSLLSFT 271
               +I      L +  ++ L        +  D          KKL+            T
Sbjct: 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG-LT 451

Query: 272 SSANISIKYSLPSLKVLRFAYCNITE--FPGFLRNSEELYLLDLSNNRIQGRISKSDSPG 329
                 I    P+++ +   Y   ++     F R    L  L++       R   +    
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511

Query: 330 WKSLIDLDLSNNFMT-----HIELH-PWMNITTLDLRN 361
             SL  L +     +      +++  P+ NI  +  R 
Sbjct: 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 70/535 (13%), Positives = 133/535 (24%), Gaps = 64/535 (11%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
                L  L L                      +L+              + N    +  
Sbjct: 70  RRFPNLRSLKLKGK-------------PRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 62  LDLGGTRIKGNFPDDIFR--LPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIG 119
           +      +     D + +    +L+ L L+  S  T         S +     +  L + 
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT----DGLLSIVTHCRKIKTLLME 172

Query: 120 FCNFT-------GSIPTSIGNLTRATEIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGNYF 171
             +F+         +     +L             + + L         L +  +     
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 172 --QGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEI-RGTIPNSTFQ 228
               G       L       L+++ +  P     L    +  RL  + +    +P     
Sbjct: 233 LELVGFFKAAANLEEFCGGSLNED-IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
              +  LDL    L          K   L+ L+  N             +      LK L
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN----VIGDRGLEVLAQYCKQLKRL 347

Query: 289 RFAYCNITEFPG-------------FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLID 335
           R       +                  +  +EL  + +  + I     +S     K+L D
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 336 LDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNN--KLSGKIPPSI 393
             L         L     IT  DL  +    S+L+     +          L+      I
Sbjct: 408 FRLVL-------LDREERIT--DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 394 CSL-SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL-EGHIHDTFANASHLRSL 451
                +++++ L     S             L  L ++     E  I         LR L
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 452 DLNSNKL--EGPLPRSLAK-CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503
            +   +    G     +A+    +E++   +    +         H   IL   S
Sbjct: 519 WVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYS 573

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 62/430 (14%), Positives = 125/430 (29%), Gaps = 85/430 (19%)

Query: 154 HVSGLSYLTTFDLSGNYFQGGVPSWLFTL----PSLLSIDLSKNMLNGPIDLFQLPNS-- 207
            + G      F+L    + G V  W+  +      L S+     M+   +DL +L  +  
Sbjct: 79  KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFR-RMIVSDLDLDRLAKARA 137

Query: 208 --LQDVRLEENEIRGTIPNSTFQLV----NLTILDLSSNNLS--GAIRFDQFSK-LKKLQ 258
             L+ ++L  ++  G   +    +V     +  L +  ++ S        + ++    L+
Sbjct: 138 DDLETLKL--DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195

Query: 259 FLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEEL---------- 308
            L+         +     +I  +  SL  ++     I E  GF + +  L          
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255

Query: 309 ---------------YLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM- 352
                           L  L  + +         P    +  LDL    +   +    + 
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315

Query: 353 ---NITTLDLRNN-------------------RIQGSILVPPPSTKVLLVSNNKLSGKIP 390
              N+  L+ RN                    RI+          +  LVS   L     
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI---- 371

Query: 391 PSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTF------- 442
            ++      L+Y+++  ++++      +G +   L    L     E  I D         
Sbjct: 372 -ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430

Query: 443 --ANASHLRSLDL--NSNKLEGPLPRSLAK-CIKLEVVNVGKNMISD-SFPCWLGSLHEL 496
                  LR          L       + +    +  + +G    SD     +      L
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 497 KILVLRSNRF 506
           + L +R   F
Sbjct: 491 QKLEMRGCCF 500

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 23/206 (11%)

Query: 260 LDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
            +L   S+           +  L S+  +     +I    G       +  L L  N++ 
Sbjct: 24  ANLKKKSVTD------AVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VRYLALGGNKLH 76

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQ---GSILVPPP 373
             IS        +L  L L+ N +  +         N+  L L  N++Q     +     
Sbjct: 77  -DISALKEL--TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133

Query: 374 STKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLK 430
           +   L +++N+L   +P  +   L++L  L LS N L  ++P   G F   T+L  L L 
Sbjct: 134 NLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPE--GVFDKLTQLKDLRLY 189

Query: 431 NNSLEGHIHDTFANASHLRSLDLNSN 456
            N L+      F   + L+ + L+ N
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 32/152 (21%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM-NITTLDLRNNRIQGSIL 369
            +L    +             S+  +  +N+ +  ++   ++ N+  L L  N++   I 
Sbjct: 24  ANLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS 79

Query: 370 V--PPPSTKVLLVSNNKLSGKIPPSI-CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELIT 426
                 +   L+++ N+L   +P  +   L++L+ L L +N L  ++P  + +  T L  
Sbjct: 80  ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137

Query: 427 LHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
           L+L +N L+      F   ++L  LDL+ N+L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 13/160 (8%)

Query: 162 TTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGT 221
              +L          +    L S+  I  + + +   +   Q   +++ + L  N++   
Sbjct: 22  IKANLKKKSVTD-AVTQN-ELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLH-D 77

Query: 222 IPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
           I      +L NLT L L+ N L  ++    F KL  L+ L L  N L S        +  
Sbjct: 78  IS--ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPD----GVFD 130

Query: 281 SLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQ 319
            L +L  L  A+  +   P G       L  LDLS N++Q
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 68/530 (12%), Positives = 156/530 (29%), Gaps = 78/530 (14%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
               K+  ++L                 +    +L+  G          ++ +  + + +
Sbjct: 63  RRFPKVRSVELKGK-------------PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109

Query: 62  LDLGGTRIKGNFPDDIFRL-----PNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVL 116
           + L    +     DD   L      N ++L L+     +        ++       L  L
Sbjct: 110 IRLKRMVV----TDDCLELIAKSFKNFKVLVLSSCEGFST----DGLAAIAATCRNLKEL 161

Query: 117 DIGFCNFTGSIPTSIGNLTRAT------EIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGN 169
           D+   +        + +            I+  ++  +   L   V+    L +  L+  
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221

Query: 170 YFQGGVPSWLFTLPSLLSIDLS-------KNMLNGPIDLFQLPNSLQDVRLEENEIRGTI 222
                + + L   P L  +           ++ +G          L+ +    + +   +
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 223 PNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL 282
           P        LT L+LS   +          +  KLQ L + +        +    +  + 
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY----IEDAGLEVLASTC 337

Query: 283 PSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNF 342
             L+ LR                  + L +     +        S G   L  +      
Sbjct: 338 KDLRELRVFPSE------PFVMEPNVALTEQGLVSV--------SMGCPKLESVLYFCRQ 383

Query: 343 MTHIEL----HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSS 398
           MT+  L        N+T   L     +    +      +   +           +     
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA----------IVEHCKD 433

Query: 399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLK--NNSLEGHIHDTFANASHLRSLDL-NS 455
           L+ LSLS   L+  +   +G ++ ++  L +    +S  G +H   +    LR L++ + 
Sbjct: 434 LRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDC 491

Query: 456 NKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG-SLHELKILVLRSN 504
              +  L  + +K   +  + +    +S      LG  + +L + V+   
Sbjct: 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 58/492 (11%), Positives = 144/492 (29%), Gaps = 61/492 (12%)

Query: 227 FQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLS-----------FTSSAN 275
           +++       +   N           +  K++ ++L      +           +     
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 276 ISIKYSLPSLKVLRFAYCNITE--FPGFLRNSEELYLLDLSNNRIQGRISKSD----SPG 329
            ++  S   L+ +R     +T+       ++ +   +L LS+       S       +  
Sbjct: 98  EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE---GFSTDGLAAIAAT 154

Query: 330 WKSLIDLDLSNNFMTHIELHPWMNI-------TTLDLRN--NRIQGSILVP----PPSTK 376
            ++L +LDL  + +  +  H   +         +L++    + +  S L       P+ K
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 377 VLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG 436
            L ++      K+   +     L+ L               G          L+  S   
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 437 HIHDT-----FANASHLRSLDLNSNKLEGP-LPRSLAKCIKLEVVNVGKNMISDSFPCWL 490
                     ++  S L +L+L+   ++   L + L +C KL+ + V   +         
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 491 GSLHELKILVLRSNRFYGPLCNSNIT--------FPFQALRIIDLSHNEFTGFLPRRIFP 542
            +  +L+ L +  +  +    N  +T             L  +     + T      I  
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394

Query: 543 SMEAMKNVD----EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG 598
           +   M        E    +Y+     D             + +     R +  S      
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA--------IVEHCKDLRRLSLSGLLTDK 446

Query: 599 EIPEVLGNFKSLKVLNLSHNSLTGN-IPVSFENMTALESLDLSF-NKLDGRIPEQLLSVT 656
               +    K +++L+++    +   +        +L  L++      D  +      + 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506

Query: 657 ALALLNLSYNRL 668
            +  L +S   +
Sbjct: 507 TMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 41/304 (13%), Positives = 93/304 (30%), Gaps = 23/304 (7%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKL-SLLHL-GATNMSLIKPFSLLNLSST 58
           +    +L  L        +    +  L+  L+    L  L G  +       ++ ++ S 
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 59  MTDLDLGGTRIKGN-FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL---S 114
           +T L+L    ++       + + P LQ L++    +  G    ++    LREL +     
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 115 VLDIGFCNFTGSIPTSIG-NLTRATEIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGNYFQ 172
            +       T     S+     +   + +     T   L         +T F L      
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI---- 406

Query: 173 GGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNL 232
                     P        + +  G   + +    L+ + L                  +
Sbjct: 407 --------IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
            +L ++    S        S    L+ L++ +     F   A ++    L +++ L  + 
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC---PFGDKALLANASKLETMRSLWMSS 515

Query: 293 CNIT 296
           C+++
Sbjct: 516 CSVS 519

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 20/158 (12%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGS 367
           LDL +  +   +S +   G   L  L+L  N +  +          + TL L NN++   
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS- 97

Query: 368 ILVPP------PSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNF 420
             +P            L +  N+L   +P  +   L+ L+ L L+ N L  +IP   G F
Sbjct: 98  --LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAF 151

Query: 421 S--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
              T L TL L  N L+   H  F     L+++ L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 40/171 (23%), Positives = 59/171 (34%), Gaps = 28/171 (16%)

Query: 189 DLSKNML-NGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAI 246
           DL    L       F+    L  + L+ N+++ T+    F  L  L  L L++N L+ ++
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 247 RFDQFSKLKKLQFLDLSNNSLLS-----FTSSANISIKYSLPSLKVLRFAYCNITEFP-G 300
               F  L +L  L L  N L S     F           L  LK LR     +   P G
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFD---------RLTKLKELRLNTNQLQSIPAG 149

Query: 301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW 351
                  L  L LS N++Q  +          L  + L  N         +
Sbjct: 150 AFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN--------QF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
           P  T+ L + +  L+     +   L+ L +L+L  N L  T+   + +  TEL TL L N
Sbjct: 34  PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLAN 92

Query: 432 NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491
           N L       F + + L  L L  N+L+        +  KL+ + +  N +  S P   G
Sbjct: 93  NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP--AG 149

Query: 492 ---SLHELKILVLRSN 504
               L  L+ L L +N
Sbjct: 150 AFDKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 10/162 (6%)

Query: 205 PNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN 264
           P   + + L+   +      +   L  LT L+L  N L   +    F  L +L  L L+N
Sbjct: 34  PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLAN 92

Query: 265 NSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRIS 323
           N L S        +   L  L  L      +   P G      +L  L L+ N++Q  I 
Sbjct: 93  NQLASLPL----GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP 147

Query: 324 KSDSPGWKSLIDLDLSNNFMTHIELHPWMN---ITTLDLRNN 362
                   +L  L LS N +  +    +     + T+ L  N
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSIC--SLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITL 427
           P  T  L ++NN+ +  +  +     L  L+ ++ S+N ++  I    G F   + +  +
Sbjct: 31  PQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEI 86

Query: 428 HLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP 487
            L +N LE   H  F     L++L L SN++      S      + ++++  N I+   P
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 488 CWLGSLHELKILVLRSN 504
               +LH L  L L +N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 15/145 (10%)

Query: 222 IPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS 281
           IP  T        L L++N  +       F KL +L+ ++ SNN +      A       
Sbjct: 30  IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----EG 79

Query: 282 LPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
              +  +      +        +  E L  L L +NRI   +      G  S+  L L +
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYD 138

Query: 341 NFMTHIE---LHPWMNITTLDLRNN 362
           N +T +         +++TL+L  N
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 609 SLKVLNLSHNSLTGNIPVS-FENMTALESLDLSFNKLDGRIPEQLLS-VTALALLNLSYN 666
            +  + L+ N L  N+    F+ + +L++L L  N++   +       ++++ LL+L  N
Sbjct: 82  GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDN 139

Query: 667 RLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCS 702
           ++   +  G     F+    +  ++L   P    C 
Sbjct: 140 QI-TTVAPG----AFDTLHSLSTLNLLANPFNCNCY 170

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 665
               L+ +N S+N +T     +FE  + +  + L+ N+L+    +    + +L  L L  
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 666 NRLWGRIPRG 675
           NR+   +   
Sbjct: 115 NRIT-CVGND 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 1e-09
 Identities = 91/565 (16%), Positives = 166/565 (29%), Gaps = 201/565 (35%)

Query: 68  RIKGNFPDDIF------------RLPNLQILFLNLNSQLTG--------YLPKSNWSSPL 107
           +++      IF             L  LQ L   ++   T          L   +  + L
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 108 REL--------DLLSVLDIGFCN------FTGSIPTSIGNLTRATEIAFASNHFTGQLPH 153
           R L         LL VL     N      F  S    +   TR  ++             
Sbjct: 235 RRLLKSKPYENCLL-VLL-NVQNAKAWNAFNLSCKILL--TTRFKQVTDF---------- 280

Query: 154 HVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRL 213
               LS  TT  +S ++          T   + S+ L K  L+       LP        
Sbjct: 281 ----LSAATTTHISLDHHSMT-----LTPDEVKSL-LLKY-LD--CRPQDLPR------- 320

Query: 214 EENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKL---KKLQFLDLSNNSL--- 267
              E+  T P    + +++ I +   + L+    +D +  +   K    ++ S N L   
Sbjct: 321 ---EVLTTNP----RRLSI-IAESIRDGLA---TWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 268 --------LS-FTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRI 318
                   LS F  SA+I      P+  +L   + ++ +      +   + +  L     
Sbjct: 370 EYRKMFDRLSVFPPSAHI------PT-ILLSLIWFDVIK------SDVMVVVNKLHK--- 413

Query: 319 QGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVL 378
                        SL++        + I +          +        + V   +   L
Sbjct: 414 ------------YSLVEKQ---PKESTISIP--------SI-----YLELKVKLENEYAL 445

Query: 379 LVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI 438
              +  +          +         D++    IPP L  +    I  HLKN       
Sbjct: 446 ---HRSI----------VDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHPE-- 488

Query: 439 HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKI 498
                  +  R + L+   LE           K+   +   N         L +L +L  
Sbjct: 489 -----RMTLFRMVFLDFRFLEQ----------KIRHDSTAWNASGSI----LNTLQQL-- 527

Query: 499 LVLRSNRFYGP-LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD-EQGRL 556
                 +FY P +C+++   P     +  +       FLP +I  ++   K  D  +  L
Sbjct: 528 ------KFYKPYICDND---PKYERLVNAILD-----FLP-KIEENLICSKYTDLLRIAL 572

Query: 557 EYMGGAFYDESITVAMQGHDFQLQK 581
                A ++E+          Q+Q+
Sbjct: 573 MAEDEAIFEEAHK--------QVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 4e-09
 Identities = 84/594 (14%), Positives = 159/594 (26%), Gaps = 206/594 (34%)

Query: 210 DVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR-FDQF-SKLKKL--QFLDLSNN 265
           D +  ++  +  +           I+  S + +SG +R F    SK +++  +F++    
Sbjct: 34  DCKDVQDMPKSILSKEEID----HIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 266 SLLSFTSSANISIKYSLPSLKVLRFAYC------NITEFPGFLRNSEELY------LLDL 313
               F  S  I  +   PS+    +         +   F  +  +  + Y      LL+L
Sbjct: 89  INYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 314 SNNR---IQGR--ISKSDSPGW---KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ 365
              +   I G     K+    W      +   +       I    W+N+   +       
Sbjct: 148 RPAKNVLIDGVLGSGKT----WVALDVCLSYKVQCKMDFKIF---WLNLKNCN------- 193

Query: 366 GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI 425
                   S + +L    KL  +I P+  S S            S  I            
Sbjct: 194 --------SPETVLEMLQKLLYQIDPNWTSRSDH----------SSNIK----------- 224

Query: 426 TLHLKNNSLEGHIHDTFANASHLRSL----DLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481
              L+ +S++  +     +  +   L    ++ + K                  N+    
Sbjct: 225 ---LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-------------WNAFNLS--- 265

Query: 482 ISDSFPCWLGSLHELKILVL-RSNRFYGPLCNSNITFPFQALRIIDLSHNEFT-GFLPRR 539
                 C        KIL+  R            +T    A     +S +  +    P  
Sbjct: 266 ------C--------KILLTTR---------FKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 540 IFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE 599
                  +        L+Y+     D      +  +  +L  I    R        +   
Sbjct: 303 ---VKSLL--------LKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDG---LATW--- 344

Query: 600 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES----LDLS-FNKLDGRIPEQLLS 654
                 N+K     +++ + LT  I  S   +   E       LS F      IP  LLS
Sbjct: 345 -----DNWK-----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLS 393

Query: 655 VTALALLNLSYNRLWGRIPRGNQF---NTFENDS-----------YIGNIHLCGEPLTVR 700
           +            +W  + + +     N     S            I +I+     L ++
Sbjct: 394 L------------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELK 436

Query: 701 CSNDGLPE---------ALPLASSDHDETASRFDWKMAKMGYASGLVIGLSIGY 745
              +              +P      D      D       Y         IG+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------QY-----FYSHIGH 479

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 18/138 (13%)

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
           ++ L++  +    +  Q++   + + LDL    +         ++  +L     + F+  
Sbjct: 1   MVKLTAELIE---QAAQYTNAVRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDN 52

Query: 294 NITEFPGF--LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---- 347
            I +  GF  LR  +    L ++NNRI  RI +        L +L L+NN +  +     
Sbjct: 53  EIRKLDGFPLLRRLKT---LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDP 108

Query: 348 LHPWMNITTLDLRNNRIQ 365
           L    ++T L +  N + 
Sbjct: 109 LASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENE 217
                  DL G      + +   TL    +ID S N +   +D F L   L+ + +  N 
Sbjct: 18  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNR 75

Query: 218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN-- 275
           I          L +LT L L++N+L      D  + LK L +L +  N +   T+  +  
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV---TNKKHYR 132

Query: 276 ISIKYSLPSLKVL 288
           + + Y +P ++VL
Sbjct: 133 LYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE--LHPWMNITTLDLRNNRIQG-S 367
           + L+   I+ + ++  +       +LDL    +  IE           +D  +N I+   
Sbjct: 2   VKLTAELIE-QAAQYTNA--VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 368 ILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS--GTIPPCLGNFSTELI 425
                   K LLV+NN++         +L  L  L L++N+L   G + P L +    L 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASL-KSLT 116

Query: 426 TLHLKNN 432
            L +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 179 LFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLS 238
                    +DL    +    +L    +    +   +NEIR  +      L  L  L ++
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFP-LLRRLKTLLVN 72

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
           +N +   I       L  L  L L+NNSL+      ++    SL SL  L      +T  
Sbjct: 73  NNRICR-IGEGLDQALPDLTELILTNNSLVEL---GDLDPLASLKSLTYLCILRNPVTNK 128

Query: 299 PGF 301
             +
Sbjct: 129 KHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 9/123 (7%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
               +    + L L    +   +   LG    +   +   +N +     D F     L++
Sbjct: 13  AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 68

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD-SFPCWLGSLHELKILVLRSNRFYGP 509
           L +N+N++             L  + +  N + +      L SL  L  L +  N    P
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN----P 124

Query: 510 LCN 512
           + N
Sbjct: 125 VTN 127

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 579 LQKILVMFRAMDFSRNRFHGEIPEV--LGNFKSLKVLNLSHNSLTGNIPVSFENMTALES 636
           L   L  F A+DFS N    EI ++      + LK L +++N +        + +  L  
Sbjct: 37  LGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 637 LDLSFNKLDG-RIPEQLLSVTALALLNLSYN 666
           L L+ N L      + L S+ +L  L +  N
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 599 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 658
            I  +         ++ S N +   +   F  +  L++L ++ N++         ++  L
Sbjct: 33  VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 659 ALLNLSYNRL 668
             L L+ N L
Sbjct: 91  TELILTNNSL 100

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 15/158 (9%)

Query: 213 LEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQ-FSKLKKLQFLDLSNNSLLSFT 271
             ++ IR      +        ++L    +    + D   S LK  + L LS N++    
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKI- 63

Query: 272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK 331
             +++S    + +L++L      I +       ++ L  L +S N+I   +S  +     
Sbjct: 64  --SSLS---GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSGIE--KLV 115

Query: 332 SLIDLDLSNNFMTHIE----LHPWMNITTLDLRNNRIQ 365
           +L  L +SNN +T+      L     +  L L  N + 
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 16/147 (10%)

Query: 151 LPHHVSGLSYLTTFDLSGNYFQ---GGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNS 207
           +   +S L       LS N  +         L  + +L  + L +N++    +L  + ++
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIKKIENLDAVADT 94

Query: 208 LQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267
           L+++ +  N+I  ++     +LVNL +L +S+N ++     D+ + L KL+ L L+ N L
Sbjct: 95  LEELWISYNQIA-SLSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

Query: 268 LSFTSSANISIKY------SLPSLKVL 288
            +     N + +Y       LP+LK L
Sbjct: 153 YNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 18/133 (13%)

Query: 378 LLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLE 435
           L      +  K+  ++ +L + ++L+LS NN+       + + S    L  L L  N ++
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK 83

Query: 436 GHIHDTFANASHLRSLDLNSN---KLEGPLPRSLAKCIKLEVVNVGKNMISD-SFPCWLG 491
             I +  A A  L  L ++ N    L G     + K + L V+ +  N I++      L 
Sbjct: 84  -KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 492 SLHELKILVLRSN 504
           +L +L+ L+L  N
Sbjct: 138 ALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 599 EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTAL 658
           ++   L   K+ K L LS N++   I  S   M  L  L L  N +  +I         L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 659 ALLNLSYNRL 668
             L +SYN++
Sbjct: 96  EELWISYNQI 105

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 221 TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
              +      NLT L + +      +       L +L+ L +  + L      A     +
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----FH 77

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
             P L  L  ++  +            L  L LS N + 
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 594 NRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQL 652
                +    L   ++L  L + +     ++       +  L +L +  + L   +    
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 653 LS-VTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGLPEAL 710
                 L+ LNLS+N L   +       T +  S +  + L G PL   C+   L    
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWK----TVQGLS-LQELVLSGNPLHCSCALRWLQRWE 128

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 28/118 (23%)

Query: 152 PHHVSGLSYLTTFDLSGNYFQGGVPSWLFT-LPSLLSIDLSKNMLNGPIDLFQLPNSLQD 210
            HH+ G   LT   +        +       L  L ++ + K+ L               
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-------------- 69

Query: 211 VRLEENEIRGTIPNSTFQ-LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL 267
                      +    F     L+ L+LS N L  ++ +     L  LQ L LS N L
Sbjct: 70  ----------FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 28/142 (19%)

Query: 382 NNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDT 441
               +      +    +L  L + +      +                            
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLEL------------------------RD 51

Query: 442 FANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL 501
                 LR+L +  + L    P +     +L  +N+  N +       +  L  L+ LVL
Sbjct: 52  LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110

Query: 502 RSNRFYGPLCNSNITFPFQALR 523
             N      C+  + +  +   
Sbjct: 111 SGNPL---HCSCALRWLQRWEE 129

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHP 350
              +    L  +E L  L + N +    +   D  G   L +L +  + +  +     H 
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 351 WMNITTLDLRNNRIQG--SILVPPPSTKVLLVSNNKL 385
              ++ L+L  N ++      V   S + L++S N L
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 158 LSYLTTFDLSGNYFQ-GGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN 216
            + +    L       G +        +L  + L    L    +L +LP  L+ + L EN
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK-LKKLELSEN 81

Query: 217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN- 275
            I G +     +L NLT L+LS N L      +   KL+ L+ LDL N  +   T+  + 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV---TNLNDY 138

Query: 276 -ISIKYSLPSLKVL 288
             S+   LP L  L
Sbjct: 139 RESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 215 ENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSA 274
             E+R   P +  +LV    LD   +N          ++   L+FL L N  L+S     
Sbjct: 15  HLELRNRTPAAVRELV----LDNCKSNDGKIE--GLTAEFVNLEFLSLINVGLIS----- 63

Query: 275 NISIKYSLPSLKVLRFAYCNITEFPGFLRNS-EELYLLDLSNNRIQGRISKSDSPGWKSL 333
            +S    LP LK L  +   I      L      L  L+LS N+++   +       + L
Sbjct: 64  -VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 334 IDLDLSNNFMTHIE 347
             LDL N  +T++ 
Sbjct: 123 KSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 598 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 657
           G+I  +   F +L+ L+L +  L  ++  +   +  L+ L+LS N++ G +      +  
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 658 LALLNLSYNRL 668
           L  LNLS N+L
Sbjct: 97  LTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
           L +D  K+       L     +L+ + L    +  ++ N   +L  L  L+LS N + G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNLP-KLPKLKKLELSENRIFG- 85

Query: 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
                  KL  L  L+LS N L      + +     L  LK L    C +T    +
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFNCEVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 33/158 (20%)

Query: 357 LDLRNNRIQGSILVPPPSTKVLLVSNNKLS-GKIPPSICSLSSLQYLSLSDNNLSGTIPP 415
           +D++           P + + L++ N K + GKI        +L++LSL +  L      
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI----- 62

Query: 416 CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVV 475
                            S+             L+ L+L+ N++ G L     K   L  +
Sbjct: 63  -----------------SVSN-----LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100

Query: 476 NVGKNMISD-SFPCWLGSLHELKILVLRSNRFYGPLCN 512
           N+  N + D S    L  L  LK L L +      + N
Sbjct: 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 316 NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE--LHPWMNITTLDLRNNRIQG-SILVPP 372
            RI   +        + L  LD   +    IE     ++N+  L L N  +   S L   
Sbjct: 12  RRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL 70

Query: 373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS--GTIPPCLGNFSTELITLHLK 430
           P  K L +S N++ G +      L +L +L+LS N L    T+ P L      L +L L 
Sbjct: 71  PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKL-ECLKSLDLF 128

Query: 431 NN---SLEGHIHDTFANASHLRSLDLNSNKLE 459
           N    +L  +    F     L  LD    + +
Sbjct: 129 NCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 287 VLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHI 346
           VL     N  +  G       L  L L N  +    S S+ P    L  L+LS N +   
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSENRIFGG 86

Query: 347 E--LHPWM-NITTLDLRNNRIQ 365
              L   + N+T L+L  N+++
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL-DGRIPEQLLSVTALAL 660
             L     LK L LS N + G + +  E +  L  L+LS NKL D    E L  +  L  
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

Query: 661 LNLSYN 666
           L+L   
Sbjct: 125 LDLFNC 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
           P + ++L + +N+++   P    SL +L+ L L  N L   +P  + +  T+L  L L  
Sbjct: 39  PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97

Query: 432 NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491
           N L       F    HL+ L +  NKL   LPR + +   L  + + +N +         
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 492 SLHELKILVLRSN 504
            L  L    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 29/150 (19%)

Query: 311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE---LHPWMNITTLDLRNNRIQGS 367
           L L +N+I  ++         +L +L L +N +  +          +T LDL  N++   
Sbjct: 45  LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-- 101

Query: 368 ILVPPPSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFSTELIT 426
                                +P ++   L  L+ L +  N L+  +P  +    T L  
Sbjct: 102 --------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTH 139

Query: 427 LHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
           L L  N L+   H  F   S L    L  N
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
               L  +      L   I      N L+ + L +N + G +     +  NLT L+LS N
Sbjct: 40  EFEELEFLSTINVGLTS-IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN--ISIKYSLPSLKVL 288
            +      +   KL+ L+ LDL N  +   T+  +   ++   LP L  L
Sbjct: 99  KIKDLSTIEPLKKLENLKSLDLFNCEV---TNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 598 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA 657
           G++  +   F+ L+ L+  +  LT +I      +  L+ L+LS N++ G +         
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 658 LALLNLSYNRL 668
           L  LNLS N++
Sbjct: 90  LTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
           L +D S++       L      L+ +      +  +I N   +L  L  L+LS N +SG 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLP-KLNKLKKLELSDNRVSG- 78

Query: 246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
                  K   L  L+LS N +   ++   +     L +LK L    C +T    +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK---KLENLKSLDLFNCEVTNLNDY 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 395 SLSSLQYLSLSDN-NLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
           + S ++ L L ++ +  G +      F  EL  L   N  L   I +     + L+ L+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEF-EELEFLSTINVGLT-SIAN-LPKLNKLKKLEL 71

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISD-SFPCWLGSLHELKILVLRSNRFYGPLCN 512
           + N++ G L     KC  L  +N+  N I D S    L  L  LK L L +      + N
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EVTN 127

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL-DGRIPEQLLSVTALAL 660
             L     LK L LS N ++G + V  E    L  L+LS NK+ D    E L  +  L  
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 661 LNLSYN 666
           L+L   
Sbjct: 118 LDLFNC 123

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 336 LDLSNNFMTHIE---LHPWMNITTLDLRNNRIQ---GSILVPPPSTKVLLVSNNKLSGKI 389
           LDL  N +  +         ++T L L  N++Q     +     S   L +S N+L   +
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91

Query: 390 PPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANAS 446
           P  +   L+ L+ L+L+ N L  ++P   G F   T+L  L L  N L+      F   +
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPD--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 447 HLRSLDLNSN 456
            L+ + L+ N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
           P  T  L +  N L          L+SL  L L  N L  ++P  + N  T L  L+L  
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85

Query: 432 NSLEGHIHDTFANASHLRSLDLNSNKL 458
           N L+   +  F   + L+ L LN+N+L
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 187 SIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSG 244
            +DL  N L   P  +F    SL  + L  N+++ ++PN  F +L +LT L+LS+N L  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 245 AIRFDQFSKLKKLQFLDLSNNSLLS 269
           ++    F KL +L+ L L+ N L S
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQS 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)

Query: 600 IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTAL 658
           +P+ L N+K L +++LS+N ++     SF NMT L +L LS+N+L   IP +    + +L
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSL 104

Query: 659 ALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCS 702
            LL+L  N +   +P G     F + S + ++ +   PL   C+
Sbjct: 105 RLLSLHGNDI-SVVPEG----AFNDLSALSHLAIGANPLYCDCN 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHL 429
           P     L +  N+ +  +P  + +   L  + LS+N +S T+     +FS  T+L+TL L
Sbjct: 30  PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN--QSFSNMTQLLTLIL 85

Query: 430 KNNSLEGHIHDTFANASHLRSLDLNSNKL 458
             N L      TF     LR L L+ N +
Sbjct: 86  SYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 39/145 (26%), Positives = 53/145 (36%), Gaps = 37/145 (25%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
            +P  I      TE+    N FT  +P  +S   +LT  DLS N           TL   
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS--------TLS-- 70

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLS- 243
                     N       +   L  + L  N +R  IP  TF  L +L +L L  N++S 
Sbjct: 71  ----------NQSFS--NMTQ-LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV 116

Query: 244 ---GAIRFDQFSKLKKLQFLDLSNN 265
              GA     F+ L  L  L +  N
Sbjct: 117 VPEGA-----FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 353 NITTLDLRNNRIQGSILVPPPSTK--VLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNL 409
           ++T L L  N+               ++ +SNN++S  +      +++ L  L LS N L
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL 90

Query: 410 SGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
              IPP    F     L  L L  N +       F + S L  L + +N
Sbjct: 91  R-CIPP--RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 205 PNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN 264
           P  + ++ L+ N+    +P       +LT++DLS+N +S  +    FS + +L  L LS 
Sbjct: 30  PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87

Query: 265 NSLLS 269
           N L  
Sbjct: 88  NRLRC 92

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 37/283 (13%), Positives = 74/283 (26%), Gaps = 64/283 (22%)

Query: 231 NLTILDLSSNNLS--GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANIS--IKYSLPSLK 286
            L  ++L+S  L   G           + + L L  NS L   +  ++   + +    + 
Sbjct: 102 ALDEVNLASCQLDPAGLRTL--LPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQIT 158

Query: 287 VLRFAYCNITEFPGF------LRNSEELYLLDLSNNRIQGRISKSDSPGWK---SLIDLD 337
            LR +   +T   G       L  +  +  L L +  +     +  +        L +L+
Sbjct: 159 TLRLSNNPLTA-AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 338 LSNNFMTH---------IELHPWMNITTLDLRNNRIQ----------GSILVPPPSTKVL 378
           ++ N                HP  ++  L L  N +           G          V 
Sbjct: 218 VAYNGAGDTAALALARAAREHP--SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVS 275

Query: 379 LVSNNKLS----------GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLH 428
           L     +S           +   S       ++L L   +L  +        +       
Sbjct: 276 LTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDS---RGATLNPWRKAQL 332

Query: 429 LKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
           L+                 +R+L         P         +
Sbjct: 333 LRVEGE-------------VRALLEQLGSSGSPSGSWSHPQFE 362

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 39/331 (11%), Positives = 93/331 (28%), Gaps = 76/331 (22%)

Query: 199 IDLFQLPNSLQDVRL--EENEIRGTIPNSTFQLVNLTILDLSSNNLSG----AIRFDQFS 252
           +D        Q+ R   E                +L  L+L+   ++      +     S
Sbjct: 52  LDHLFFHYEFQNQRFSAEVLS-------------SLRQLNLAGVRMTPVKCTVVAAVLGS 98

Query: 253 KLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF------PGFLRNSE 306
               L  ++L++  L     +   ++       + L     ++            L +  
Sbjct: 99  GRHALDEVNLASCQL---DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC 155

Query: 307 ELYLLDLSNNRIQGRISKSDSPGWK---SLIDLDLSNNFMTH---------IELHPWMNI 354
           ++  L LSNN +          G     S+  L L +  +           ++ +    +
Sbjct: 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR--QL 213

Query: 355 TTLDLRNNRIQ-------GSILVPPPSTKVLLVSNNKLS----------GKIPPSICSLS 397
             L++  N                 PS ++L +  N+LS          G        + 
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV- 272

Query: 398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK 457
               +SL++          +  + + +++   +N +              L   DL  ++
Sbjct: 273 ---VVSLTEGT-------AVSEYWSVILSEVQRNLNS--WDRARVQRHLELLLRDLEDSR 320

Query: 458 LEGPLPRSLAKCIK----LEVVNVGKNMISD 484
                P   A+ ++    +  +         
Sbjct: 321 GATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 39/232 (16%)

Query: 161 LTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKNMLNGP-----IDLFQLPNS-LQDVRL 213
           L   +L+       G+ + L        + L  N L         DL       +  +RL
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 214 EENEIRGT---------IPNSTFQLVNLTILDLSSNNLS--GAIRF-DQFSKLKKLQFLD 261
             N +              N++     +T L L    L   G      Q  + ++LQ L+
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTS-----VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 262 LSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT--------EFPGFLRNSEELYLLDL 313
           ++ N      + A        PSL++L   +  ++        +  G       + +   
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

Query: 314 SNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ 365
               +              L ++  + N      +   + +   DL ++R  
Sbjct: 278 EGTAV-------SEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGA 322

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 370 VP---PPSTKVLLVSNNKLSGKIPPSIC--SLSSLQYLSLSDNNLSGTIPPCLGNFS--T 422
           +P   P  T  LL+++N+L  +I        L  L  L L  N L+  I P    F   +
Sbjct: 23  IPRDIPLHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEP--NAFEGAS 78

Query: 423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
            +  L L  N ++   +  F     L++L+L  N++
Sbjct: 79  HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 20/110 (18%)

Query: 336 LDLSNNFMTHIE----LHPWMNITTLDLRNNRIQGSILVPP------PSTKVLLVSNNKL 385
           L L++N +  I          ++  L+L+ N++ G   + P         + L +  NK+
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEGASHIQELQLGENKI 90

Query: 386 SGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNN 432
             +I   +   L  L+ L+L DN +S  + P  G+F     L +L+L +N
Sbjct: 91  K-EISNKMFLGLHQLKTLNLYDNQIS-CVMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 603 VLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALL 661
           + G    L  L L  N LTG  P +FE  + ++ L L  NK+   I  ++   +  L  L
Sbjct: 49  LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTL 107

Query: 662 NLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCS 702
           NL  N++   +  G    +FE+ + + +++L   P    C 
Sbjct: 108 NLYDNQI-SCVMPG----SFEHLNSLTSLNLASNPFNCNCH 143

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 28/135 (20%)

Query: 222 IPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS 281
           IP  T      T L L+ N L        F +L  L  L+L  N L     +A       
Sbjct: 27  IPLHT------TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF----EG 76

Query: 282 LPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPG----WKSLIDL 336
              ++ L+     I E          +L  L+L +N+I         PG      SL  L
Sbjct: 77  ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-----SCVMPGSFEHLNSLTSL 131

Query: 337 DLSNNFMTHIELHPW 351
           +L++N        P+
Sbjct: 132 NLASN--------PF 138

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 355 TTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLS 410
           TT+D     +     VP   P +T+VL + +N+++ K+ P +   L+ L  L L +N L+
Sbjct: 12  TTVDCSGKSLAS---VPTGIPTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT 67

Query: 411 GTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
             +P   G F   T+L  L L +N L+      F N   L  + L +N
Sbjct: 68  -VLPA--GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 205 PNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS 263
           P + Q + L +N+I   +    F +L  LT LDL +N L+  +    F KL +L  L L+
Sbjct: 29  PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86

Query: 264 NNSLLS 269
           +N L S
Sbjct: 87  DNQLKS 92

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 205 PNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS 263
           P   Q + L  N+I   +    F  LVNL  L  +SN L+ AI    F KL +L  LDL+
Sbjct: 32  PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89

Query: 264 NNSLLS 269
           +N L S
Sbjct: 90  DNHLKS 95

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 355 TTLDLRNNRIQGSILVP---PPSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLS 410
           T ++ +N R+     VP   P   + L ++NN+++ K+ P +   L +LQ L  + N L+
Sbjct: 15  TLVNCQNIRLAS---VPAGIPTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLT 70

Query: 411 GTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
             IP   G F   T+L  L L +N L+      F N   L  + L +N
Sbjct: 71  -AIPT--GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 189 DLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAI 246
           +L  N L   P  +F     L  + L +N+I+ ++P+  F +L  LTIL L  N L  ++
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 247 RFDQFSKLKKLQFLDLSNNSLLS 269
               F KL +L+ L L  N L S
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKS 114

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 355 TTLDLRNNRIQGSILVPP------PSTKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDN 407
           T L+L +N++Q    +P            L +S N++   +P  +   L+ L  L L +N
Sbjct: 31  TRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86

Query: 408 NLSGTIPPCLGNFS--TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN 456
            L  ++P   G F   T+L  L L  N L+      F   + L+ + L++N
Sbjct: 87  KLQ-SLPN--GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 205 PNSLQDVRLEENEIRGTIPNSTF-QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS 263
           P+S   + LE N+++ ++P+  F +L  LT L LS N +  ++    F KL KL  L L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84

Query: 264 NNSLLS 269
            N L S
Sbjct: 85  ENKLQS 90

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 605 GNFKSLKVLNLSHNSLTGNIP---VSFENMTALESLDLSFNKLDGR----IPEQLLSVTA 657
             F +LK L +        +    +  + +  LE++D+S   L       + + +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 658 LALLNLSYNRL 668
           L  +N+ YN L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 13/159 (8%)

Query: 200 DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG-AIRFDQFSKLKKLQ 258
           DL  + +++  +   + +    +        NL  L++ S  L    +     S L  L+
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 259 FLDLSNNSL-----LSFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNS---EELY 309
            L L                  +  K   P+LK L                 S    +L 
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 310 LLDLSNNRIQ---GRISKSDSPGWKSLIDLDLSNNFMTH 345
            +D+S   +     R+        K L  +++  N+++ 
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-04
 Identities = 25/212 (11%), Positives = 55/212 (25%), Gaps = 23/212 (10%)

Query: 93  QLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRA-TEIAFASNHFTGQL 151
            +   + ++       E      +D      +      +  +  A   +       T  L
Sbjct: 126 DIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185

Query: 152 PHHVSGLSYLTTFDLSGNYFQGGVPSWLFT--LPSL--LSIDLSKNMLNGPIDLFQLPNS 207
                    L + ++        V   +    LP+L  L + +         D+      
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 208 LQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS--GAIRFDQFSKLKKLQFLDLSNN 265
               R                  NL  L +            F +   L +L+ +D+S  
Sbjct: 246 FSKDRFP----------------NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289

Query: 266 SLLSFTSSANISIKYSLPSLKVLRFAYCNITE 297
            L    +   +     +  LK +   Y  +++
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	776
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.59

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.9e-78  Score=709.19  Aligned_cols=657  Identities=29%  Similarity=0.398  Sum_probs=544.3

Q ss_pred             CCCCEEeCCCccCCCC---ChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCC--CCCCCC
Q 047486           32 TKLSLLHLGATNMSLI---KPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPK--SNWSSP  106 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~---~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~--~~~~~~  106 (776)
                      .+++.|+|+++.+.+.   +|..+.++ ++|+.++++.+.+. .+|..++++++|++|+|++| .+.|.+|.  .     
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L-~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-----  121 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSL-TGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRN-SLSGPVTTLTS-----  121 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTC-TTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSS-EEEEEGGGGGG-----
T ss_pred             CcEEEEECCCCCcCCccCccChhHhcc-CcccccCCcCCCcC-CCchhhccCCCCCEEECCCC-cCCCcCCChHH-----
Confidence            5678888888888887   77788888 88888888888765 46678888889999999888 88887776  4     


Q ss_pred             cccCCCCcEEEccCCcccccccccc-cCCCCCCEEEccCCcccCCCchh---hcCCCCCCEEEccCCcCCCCCCccccCC
Q 047486          107 LRELDLLSVLDIGFCNFTGSIPTSI-GNLTRATEIAFASNHFTGQLPHH---VSGLSYLTTFDLSGNYFQGGVPSWLFTL  182 (776)
Q Consensus       107 l~~L~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l  182 (776)
                      +.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+..|.  ..+
T Consensus       122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l  199 (768)
T 3rgz_A          122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRC  199 (768)
T ss_dssp             GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTC
T ss_pred             HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccC
Confidence            6667778999999888888777766 78888999999998888877776   78888899999999888866553  788


Q ss_pred             CCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEec
Q 047486          183 PSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL  262 (776)
Q Consensus       183 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  262 (776)
                      ++|++|++++|.+.+.++.+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.++..   .+++|++|++
T Consensus       200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L  276 (768)
T 3rgz_A          200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSL  276 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEEC
T ss_pred             CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEEC
Confidence            8899999999988886666766688999999999988888888889999999999999888776632   7888999999


Q ss_pred             cCCCCC-ccccccccccccCCCCccEEeccCCCCC-CcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcC
Q 047486          263 SNNSLL-SFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN  340 (776)
Q Consensus       263 s~n~i~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  340 (776)
                      ++|.++ .++..    ....+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++
T Consensus       277 ~~n~l~~~ip~~----~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~  352 (768)
T 3rgz_A          277 AENKFTGEIPDF----LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF  352 (768)
T ss_dssp             CSSEEEESCCCC----SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred             cCCccCCccCHH----HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence            998854 22222    1223588999999999886 67788899999999999999998888877668889999999999


Q ss_pred             cccccccccc---cc-ccCEEeccCcccCCCCCCC-----CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc
Q 047486          341 NFMTHIELHP---WM-NITTLDLRNNRIQGSILVP-----PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG  411 (776)
Q Consensus       341 n~l~~~~~~~---~~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  411 (776)
                      |.+++..+..   +. +|++|++++|.+++.++..     +++|++|++++|.+.+.+|..+..+++|++|++++|++++
T Consensus       353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  432 (768)
T 3rgz_A          353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG  432 (768)
T ss_dssp             SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence            9988655543   33 8999999999988766543     5689999999999999999999999999999999999999


Q ss_pred             cCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc
Q 047486          412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG  491 (776)
Q Consensus       412 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  491 (776)
                      .+|..+..+. +|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++
T Consensus       433 ~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  511 (768)
T 3rgz_A          433 TIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG  511 (768)
T ss_dssp             CCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence            9999998886 799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCc--eecccCc-----cc
Q 047486          492 SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR--LEYMGGA-----FY  564 (776)
Q Consensus       492 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~--~~~~~~~-----~~  564 (776)
                      .+++|++|++++|++.+.+|...  ..+++|+.||+++|+++|.+|..++... .+..+.....  ..+....     ..
T Consensus       512 ~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          512 RLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             cCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhccc-chhhhhcccccccccccccccccccc
Confidence            99999999999999999888765  6789999999999999999998865432 2221111110  0000000     00


Q ss_pred             cceE------------------------EEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcC
Q 047486          565 DESI------------------------TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSL  620 (776)
Q Consensus       565 ~~~~------------------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  620 (776)
                      ....                        .....|........++.|+.|||++|+++|.+|.+|+++++|+.|+|++|++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  668 (768)
T 3rgz_A          589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI  668 (768)
T ss_dssp             SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence            0000                        0111222222233468899999999999999999999999999999999999


Q ss_pred             cccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCCCCCCC
Q 047486          621 TGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVR  700 (776)
Q Consensus       621 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~  700 (776)
                      +|.+|..|+++++|++|||++|+++|.+|+.+..+++|++||+++|+++|.||.++||.+|...+|.||++|||.|+. .
T Consensus       669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~  747 (768)
T 3rgz_A          669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-R  747 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-C
T ss_pred             CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999997 8


Q ss_pred             CCCCCCCCCC
Q 047486          701 CSNDGLPEAL  710 (776)
Q Consensus       701 C~~~~~~~~~  710 (776)
                      |....+..|+
T Consensus       748 C~~~~~~~~~  757 (768)
T 3rgz_A          748 CDPSNADGYA  757 (768)
T ss_dssp             CCSCC-----
T ss_pred             CCCCccCCCC
Confidence            9875544443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2e-70  Score=642.81  Aligned_cols=604  Identities=29%  Similarity=0.366  Sum_probs=387.8

Q ss_pred             CCCEEeCCCCCCccccCC---hhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCC--CCCCC
Q 047486            6 KLTHLDLSFCVLTIEQRT---FDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPD--DIFRL   80 (776)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~--~l~~l   80 (776)
                      ++++|||+++.+.   +.   +++.+.++++|+.++++.+.+.. .|..++.+ ++|++|+|++|.+.|.+|.  .++++
T Consensus        51 ~v~~L~L~~~~l~---g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l  125 (768)
T 3rgz_A           51 KVTSIDLSSKPLN---VGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSC  125 (768)
T ss_dssp             EEEEEECTTSCCC---EEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCC-TTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred             cEEEEECCCCCcC---CccCccChhHhccCcccccCCcCCCcCC-CchhhccC-CCCCEEECCCCcCCCcCCChHHHhCC
Confidence            4566666666664   44   56666666666666666555432 23455566 6666666666666665655  66666


Q ss_pred             CCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCccccccccc---ccCCCCCCEEEccCCcccCCCchhhcC
Q 047486           81 PNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTS---IGNLTRATEIAFASNHFTGQLPHHVSG  157 (776)
Q Consensus        81 ~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l~~~~p~~~~~  157 (776)
                      ++|++|++++| .+.+.+|..+    +.++++|++|++++|.+++..|..   +.++++|++|++++|.+++..|  +..
T Consensus       126 ~~L~~L~Ls~n-~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~  198 (768)
T 3rgz_A          126 SGLKFLNVSSN-TLDFPGKVSG----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR  198 (768)
T ss_dssp             TTCCEEECCSS-EEECCSSCCS----CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTT
T ss_pred             CCCCEEECcCC-ccCCcCCHHH----hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--ccc
Confidence            66666666666 5555555432    134444666666666666655554   5566666666666666665444  255


Q ss_pred             CCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC-CCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486          158 LSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID-LFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD  236 (776)
Q Consensus       158 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  236 (776)
                      +++|++|++++|.+.+.+|. ++++++|++|++++|.+++..+ .+..+++|++|++++|.+++.+|..  .+++|++|+
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~  275 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS  275 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence            66666666666666655555 6666666666666666654332 2334466666666666666555543  566666666


Q ss_pred             CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC-Ccchh-hhCCcccceEecc
Q 047486          237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT-EFPGF-LRNSEELYLLDLS  314 (776)
Q Consensus       237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~~~~L~~L~L~  314 (776)
                      +++|.+.+.++...+..+++|++|++++|.++....    ..+..+++|++|++++|.++ .+|.. +..+++|++|+++
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP----PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC----GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc----hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            666666655553333334666666666665432111    12345566666666666664 55543 5666666666666


Q ss_pred             cCccccccCCCcccCCc-cCCeEeCcCcccccccccc-----ccccCEEeccCcccCCCCCC---CCCCCcEEEccCCcC
Q 047486          315 NNRIQGRISKSDSPGWK-SLIDLDLSNNFMTHIELHP-----WMNITTLDLRNNRIQGSILV---PPPSTKVLLVSNNKL  385 (776)
Q Consensus       315 ~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l  385 (776)
                      +|.+++.+|..+ ..++ +|++|++++|.+++..+..     +++|++|++++|.+++.+|.   .+++|++|++++|.+
T Consensus       352 ~n~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          352 FNEFSGELPESL-TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             SSEEEECCCTTH-HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCccCccccHHH-HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            666665555554 3343 6666666666655433321     34566666666666655443   255666666666666


Q ss_pred             ccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChh
Q 047486          386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS  465 (776)
Q Consensus       386 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  465 (776)
                      .+.+|..+..+++|++|++++|.+.+.+|..+..+. +|++|++++|.+++.+|..+..+++|++|+|++|++++.+|.+
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence            666666666666666666666666666666655554 5666666666666666666666666666666666666666666


Q ss_pred             hhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC-------------------------------
Q 047486          466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN-------------------------------  514 (776)
Q Consensus       466 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------------  514 (776)
                      ++.+++|++|++++|++++.+|..+..+++|++|++++|++.|.+|...                               
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            6666666666666666666666666666666666666666665554321                               


Q ss_pred             -------------------------------------CCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486          515 -------------------------------------ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE  557 (776)
Q Consensus       515 -------------------------------------~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~  557 (776)
                                                           .+..+++|+.||+++|+++|.+|..+ .               
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l-~---------------  653 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-G---------------  653 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG-G---------------
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH-h---------------
Confidence                                                 11345678889999999988888653 1               


Q ss_pred             cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486          558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  637 (776)
                                              .++.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++|
T Consensus       654 ------------------------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          654 ------------------------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             ------------------------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ------------------------ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence                                    26778999999999999999999999999999999999999999999999999999


Q ss_pred             eccCccCcCCCchhhccccccccccCccCc-ceec
Q 047486          638 DLSFNKLDGRIPEQLLSVTALALLNLSYNR-LWGR  671 (776)
Q Consensus       638 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~  671 (776)
                      ||++|+++|.||+. ..+..+....+.+|+ ++|.
T Consensus       710 ~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          710 DLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             ECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             ECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            99999999999975 445566677788885 7874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-58  Score=537.61  Aligned_cols=576  Identities=21%  Similarity=0.245  Sum_probs=340.6

Q ss_pred             CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCE
Q 047486            6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQI   85 (776)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~   85 (776)
                      ++++||+++|.+.   +..+..+.++++|++|++++|.+.+..|..++++ ++|++|+|++|.+++..+.+|+++++|++
T Consensus        26 ~l~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           26 NITVLNLTHNQLR---RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TCSEEECCSSCCC---CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCcEEECCCCCCC---CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCE
Confidence            4556666655554   3333445555666666666665555555555555 56666666666555333334555666666


Q ss_pred             EeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhc--CCCCCCE
Q 047486           86 LFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS--GLSYLTT  163 (776)
Q Consensus        86 L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~  163 (776)
                      |++++| .+.+..|..     +.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+.  .+++|++
T Consensus       102 L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A          102 LHLMSN-SIQKIKNNP-----FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             EECCSS-CCCCCCSCT-----TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             EECCCC-ccCccChhH-----ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            666655 454333333     33444466666666655555555555566666666666655554444443  3355666


Q ss_pred             EEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC-----CCCCCCCCcEEEccCCcCCCCCCccccCCCC--CCEEE
Q 047486          164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID-----LFQLPNSLQDVRLEENEIRGTIPNSTFQLVN--LTILD  236 (776)
Q Consensus       164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~  236 (776)
                      |++++|.+++..|.++..+++|+.|+++++.+.....     .... ++|+.|++++|.+++..|..+..++.  |++|+
T Consensus       176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT-SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh-ccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            6666665555555555555556666555554432100     0011 45566666666665555555555433  66666


Q ss_pred             CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC------Ccch----hhhCCc
Q 047486          237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT------EFPG----FLRNSE  306 (776)
Q Consensus       237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~------~lp~----~l~~~~  306 (776)
                      +++|.+.+ ++...|..+++|++|++++|.+.....    ..+..+++|++|++++|...      .+|.    .+..++
T Consensus       255 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          255 LSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFS----HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             CTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECT----TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             CCCCCcCc-cCcccccCcccccEeeCCCCccCccCh----hhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            66666552 233455555666666666655433322    12334555555555544322      2221    344444


Q ss_pred             ccceEecccCccccccCCCcccCCccCCeEeCcCccccc--cccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCc
Q 047486          307 ELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH--IELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNK  384 (776)
Q Consensus       307 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~  384 (776)
                      +|+.|++++|.+.+ ++...+.++++|++|++++|.+..  +....+..                ...++|+.|++++|+
T Consensus       330 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~----------------~~~~~L~~L~L~~n~  392 (680)
T 1ziw_A          330 CLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS----------------LAHSPLHILNLTKNK  392 (680)
T ss_dssp             TCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG----------------GTTSCCCEEECTTSC
T ss_pred             CCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcc----------------cccCcCceEECCCCC
Confidence            55555555554443 222222444444444444443211  11111000                012467777888888


Q ss_pred             CccCCCccccCCCCCCEEEccCCcCcccCCc-hhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCc--CC
Q 047486          385 LSGKIPPSICSLSSLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE--GP  461 (776)
Q Consensus       385 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~  461 (776)
                      +.+..|.++..+++|++|++++|.+.+.+|. .+..+ ++|++|++++|.+++..+..|..+++|+.|++++|.+.  +.
T Consensus       393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc-ccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            7777777788888888888888888766664 34344 46888888888777777777777788888888877776  45


Q ss_pred             CChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccc
Q 047486          462 LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF  541 (776)
Q Consensus       462 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~  541 (776)
                      .|..+..+++|++|++++|++++..+.+|..+++|++|++++|++.+.......                   ..|...+
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------~~~~~~~  532 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP-------------------GGPIYFL  532 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST-------------------TSCCCTT
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc-------------------CCcchhh
Confidence            677777777777777777777777677777777777777777766543211100                   0000001


Q ss_pred             cChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCc
Q 047486          542 PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLT  621 (776)
Q Consensus       542 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  621 (776)
                                                             ..++.|+.|++++|+++...+..|+++++|+.|+|++|+++
T Consensus       533 ---------------------------------------~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          533 ---------------------------------------KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             ---------------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ---------------------------------------cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence                                                   11456777888888887555556888899999999999998


Q ss_pred             ccCCccccccCCCcEEeccCccCcCCCchhhc-cccccccccCccCcceecCC
Q 047486          622 GNIPVSFENMTALESLDLSFNKLDGRIPEQLL-SVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       622 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP  673 (776)
                      +..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+
T Consensus       574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            77777788889999999999999888888777 77888888888888776544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-58  Score=536.60  Aligned_cols=608  Identities=20%  Similarity=0.203  Sum_probs=413.7

Q ss_pred             CEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEe
Q 047486            8 THLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILF   87 (776)
Q Consensus         8 ~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~   87 (776)
                      +.+|++++.++    .+|..+.  +++++|++++|.+.+..+..+.++ ++|++|+|++|.+.+..|..++++++|++|+
T Consensus         7 ~~~~cs~~~L~----~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~   79 (680)
T 1ziw_A            7 EVADCSHLKLT----QVPDDLP--TNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLN   79 (680)
T ss_dssp             SEEECCSSCCS----SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred             CeeECCCCCcc----ccccccC--CCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence            45666666663    3333222  566666666666666655566666 6666666666666655566666666666666


Q ss_pred             ccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEcc
Q 047486           88 LNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS  167 (776)
Q Consensus        88 Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  167 (776)
                      +++| .+.+..+..     +.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        80 L~~n-~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           80 LQHN-ELSQLSDKT-----FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS  153 (680)
T ss_dssp             CCSS-CCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred             CCCC-ccCccChhh-----hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence            6666 544322222     3344445555555555554444555555555555555555555555555555555555555


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccC
Q 047486          168 GNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR  247 (776)
Q Consensus       168 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~  247 (776)
                      +|.+++..+..+..+                     .+++|++|++++|.+++..|..+..+++|+.|+++++.+.+...
T Consensus       154 ~n~l~~~~~~~~~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  212 (680)
T 1ziw_A          154 NNKIQALKSEELDIF---------------------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT  212 (680)
T ss_dssp             SSCCCCBCHHHHGGG---------------------TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHH
T ss_pred             CCcccccCHHHhhcc---------------------ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhH
Confidence            555554444333211                     11455555555555555556666666677777776666542211


Q ss_pred             cc--ccCCCCCCCEEeccCCCCCccccccccccccCC--CCccEEeccCCCCCCcc-hhhhCCcccceEecccCcccccc
Q 047486          248 FD--QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL--PSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRI  322 (776)
Q Consensus       248 ~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~  322 (776)
                      ..  .....++|++|++++|.+.......    +..+  ++|++|++++|.++.++ .++..+++|+.|++++|.+.+..
T Consensus       213 ~~~~~~l~~~~L~~L~L~~n~l~~~~~~~----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  288 (680)
T 1ziw_A          213 EKLCLELANTSIRNLSLSNSQLSTTSNTT----FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF  288 (680)
T ss_dssp             HHHHHHHTTSCCCEEECTTSCCCEECTTT----TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred             HHHHHHhhhccccEEEccCCcccccChhH----hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC
Confidence            00  0012356777777777655443222    2223  34777777777776554 56788888888888888888655


Q ss_pred             CCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEE
Q 047486          323 SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYL  402 (776)
Q Consensus       323 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  402 (776)
                      +..+ .++++|++|++++|.......  ...+..       +....+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus       289 ~~~~-~~l~~L~~L~L~~~~~~~~~~--~~~lp~-------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  358 (680)
T 1ziw_A          289 SHSL-HGLFNVRYLNLKRSFTKQSIS--LASLPK-------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL  358 (680)
T ss_dssp             TTTT-TTCTTCCEEECTTCBCCC--------CCE-------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred             hhhh-cCCCCccEEeccchhhhcccc--cccccc-------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence            5444 778888888887764332110  000111       111223456788999999999998888889999999999


Q ss_pred             EccCCcCccc-CCc-hhhhc-CCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcC
Q 047486          403 SLSDNNLSGT-IPP-CLGNF-STELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVG  478 (776)
Q Consensus       403 ~Ls~n~l~~~-~p~-~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~  478 (776)
                      ++++|.+... ++. .+... .++|+.|++++|++++..+..|..+++|+.|++++|.+++.+| ..|.++++|++|+++
T Consensus       359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls  438 (680)
T 1ziw_A          359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS  438 (680)
T ss_dssp             ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred             ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence            9999976432 232 22222 1379999999999999999999999999999999999987655 789999999999999


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCcccc--cCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCce
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRL  556 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~  556 (776)
                      +|++.+..+..|..+++|++|++++|.+.+  ..|..  +..+++|+.|++++|++++ +|...|.+             
T Consensus       439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~--~~~l~~L~~L~Ls~N~l~~-i~~~~~~~-------------  502 (680)
T 1ziw_A          439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIAN-INDDMLEG-------------  502 (680)
T ss_dssp             SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT--TTTCTTCCEEECCSSCCCC-CCTTTTTT-------------
T ss_pred             CCCcceeChhhhhcCcccccchhccccccccccCCcc--cccCCCCCEEECCCCCCCc-CChhhhcc-------------
Confidence            999999999999999999999999999874  34443  4778999999999999985 44333332             


Q ss_pred             ecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccch--------hhhccCCCCCEEeCCCCcCcccCCccc
Q 047486          557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP--------EVLGNFKSLKVLNLSHNSLTGNIPVSF  628 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~  628 (776)
                                                ++.|+.|++++|++++..+        ..|+++++|++|+|++|+++...+..|
T Consensus       503 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~  556 (680)
T 1ziw_A          503 --------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF  556 (680)
T ss_dssp             --------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             --------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence                                      5678999999999986532        238899999999999999996555679


Q ss_pred             cccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCccc-ccccccccCCCCCCCCCCCCC-CCC
Q 047486          629 ENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFE-NDSYIGNIHLCGEPLTVRCSN-DGL  706 (776)
Q Consensus       629 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~-~~~~~~n~~l~g~pl~~~C~~-~~~  706 (776)
                      .++++|++|||++|++++..+..|..+++|+.|++++|++++..|..     |. .........+.|||+.|+|.. .|.
T Consensus       557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~~L~~l~l~~N~~~c~c~~~~~~  631 (680)
T 1ziw_A          557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV-----FGPAFRNLTELDMRFNPFDCTCESIAWF  631 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH-----HHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred             ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH-----hcccccccCEEEccCCCcccCCccHHHH
Confidence            99999999999999999888888899999999999999999765532     11 122234456788999999985 666


Q ss_pred             CCCC
Q 047486          707 PEAL  710 (776)
Q Consensus       707 ~~~~  710 (776)
                      ..|.
T Consensus       632 ~~~~  635 (680)
T 1ziw_A          632 VNWI  635 (680)
T ss_dssp             ECCS
T ss_pred             HHHH
Confidence            5553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-54  Score=498.30  Aligned_cols=539  Identities=19%  Similarity=0.137  Sum_probs=322.3

Q ss_pred             CEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEe
Q 047486            8 THLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILF   87 (776)
Q Consensus         8 ~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~   87 (776)
                      +++|.++..++    .+|..+.  +++++|++++|.+++..|..+.++ ++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus        15 ~~~~c~~~~l~----~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   87 (606)
T 3t6q_A           15 KTYNCENLGLN----EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLV   87 (606)
T ss_dssp             TEEECTTSCCS----SCCTTSC--TTCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ceEECCCCCcc----cCcCCCC--CcCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeee
Confidence            45666665553    3333332  356677777777766666666666 6677777777766666666667777777777


Q ss_pred             ccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEcc
Q 047486           88 LNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS  167 (776)
Q Consensus        88 Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  167 (776)
                      +++| .+.+..|..     +.++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        88 Ls~n-~l~~~~~~~-----~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  161 (606)
T 3t6q_A           88 LTAN-PLIFMAETA-----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ  161 (606)
T ss_dssp             CTTC-CCSEECTTT-----TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred             CCCC-cccccChhh-----hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence            7776 666555554     4444457777777776665555666666677777777766665333334446667777777


Q ss_pred             CCcCCCCCCccccCCCCCC--EEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccc
Q 047486          168 GNYFQGGVPSWLFTLPSLL--SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA  245 (776)
Q Consensus       168 ~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  245 (776)
                      +|.+++..|..++.+++|+  +|++++|.+.+..+......+|+.|++++|.   ..+..+..+.+++...+....+.  
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~--  236 (606)
T 3t6q_A          162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE--  236 (606)
T ss_dssp             SSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT--
T ss_pred             cCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhc--
Confidence            7666665566666666666  6666666665543332222455555555543   12222233333222222111111  


Q ss_pred             cCccccCCCCCCCEEeccCCCCCccccccccccccC--CCCccEEeccCCCCCCcch-hhhCCcccceEecccCcccccc
Q 047486          246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS--LPSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRI  322 (776)
Q Consensus       246 i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~--l~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~~~  322 (776)
                                .+...+        ++...    +..  ..+|+.|++++|.++.++. .+..+++|++|++++|.++ .+
T Consensus       237 ----------~~~~~~--------i~~~~----~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l  293 (606)
T 3t6q_A          237 ----------DMDDED--------ISPAV----FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL  293 (606)
T ss_dssp             ----------TSCCCC--------CCGGG----GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred             ----------cccccc--------cChhH----hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence                      000000        11111    111  1267788888888877764 5778888888888888887 56


Q ss_pred             CCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEE
Q 047486          323 SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYL  402 (776)
Q Consensus       323 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  402 (776)
                      |..+ ..+++|++|++++|.+++.                                          .|..+..+++|++|
T Consensus       294 p~~l-~~l~~L~~L~l~~n~l~~~------------------------------------------~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          294 PSGL-VGLSTLKKLVLSANKFENL------------------------------------------CQISASNFPSLTHL  330 (606)
T ss_dssp             CSSC-CSCTTCCEEECTTCCCSBG------------------------------------------GGGCGGGCTTCSEE
T ss_pred             Chhh-cccccCCEEECccCCcCcC------------------------------------------chhhhhccCcCCEE
Confidence            6554 5556665555555544433                                          33334444444444


Q ss_pred             EccCCcCcccCCch-hhhcCCCccEEECCCCcCCccC--cccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486          403 SLSDNNLSGTIPPC-LGNFSTELITLHLKNNSLEGHI--HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK  479 (776)
Q Consensus       403 ~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  479 (776)
                      ++++|.+.+.+|.. +..+ ++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..+++|+.|++++
T Consensus       331 ~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             ECCCCCcccccchhhhhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            44444444334332 2222 24555555555544433  34455555555555555555555555555555555555555


Q ss_pred             CccCcccch-hhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCC-Cc-ccccChHHhhhccccCce
Q 047486          480 NMISDSFPC-WLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFL-PR-RIFPSMEAMKNVDEQGRL  556 (776)
Q Consensus       480 n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~-p~-~~~~~l~~l~~l~~~~~~  556 (776)
                      |++++..+. .+..+++|++|++++|.+.+..+...  ..+++|+.|++++|++++.. |. ..+               
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~---------------  472 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL---------------  472 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG---------------
T ss_pred             CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh---------------
Confidence            555544332 25555555555555555554444332  34555666666666555311 10 001               


Q ss_pred             ecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcE
Q 047486          557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALES  636 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  636 (776)
                                              ..++.|+.|++++|++++..|..|+.+++|+.|+|++|++++.+|..|.+++.| .
T Consensus       473 ------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~  527 (606)
T 3t6q_A          473 ------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y  527 (606)
T ss_dssp             ------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred             ------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence                                    125677888888888888888899999999999999999999999999999999 9


Q ss_pred             EeccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486          637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       637 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                      |||++|++++.+|..+..+++|+.|++++|++.+..+
T Consensus       528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999888889999999999999999987554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.1e-53  Score=484.09  Aligned_cols=303  Identities=23%  Similarity=0.264  Sum_probs=250.7

Q ss_pred             cCEEeccCcccCCCCC---CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC
Q 047486          354 ITTLDLRNNRIQGSIL---VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK  430 (776)
Q Consensus       354 L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~  430 (776)
                      ++.+++++|.+++..+   ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+. +|++|+++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~  333 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIK  333 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECC
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECC
Confidence            4444444444443322   23567778888888877 6788899999999999999999966677777776 89999999


Q ss_pred             CCcCCccCc-ccccCCCCccEEEcCCCcCcCCC--ChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccc
Q 047486          431 NNSLEGHIH-DTFANASHLRSLDLNSNKLEGPL--PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY  507 (776)
Q Consensus       431 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  507 (776)
                      +|.+.+.++ ..+..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..+..+++|++|++++|++.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            999986554 45999999999999999999776  778999999999999999999999999999999999999999998


Q ss_pred             ccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhccee
Q 047486          508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFR  587 (776)
Q Consensus       508 ~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  587 (776)
                      +..+... +..+++|+.|++++|.+++..|.. +..                                       ++.|+
T Consensus       414 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~---------------------------------------l~~L~  452 (606)
T 3t6q_A          414 VKDAQSP-FQNLHLLKVLNLSHSLLDISSEQL-FDG---------------------------------------LPALQ  452 (606)
T ss_dssp             CCTTCCT-TTTCTTCCEEECTTCCCBTTCTTT-TTT---------------------------------------CTTCC
T ss_pred             Ccccchh-hhCcccCCEEECCCCccCCcCHHH-HhC---------------------------------------CCCCC
Confidence            7665442 367899999999999998765543 221                                       56789


Q ss_pred             EEecCCCccccc---chhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486          588 AMDFSRNRFHGE---IPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  664 (776)
Q Consensus       588 ~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  664 (776)
                      .|++++|++++.   .+..++.+++|+.|++++|++++..|..|+++++|++|||++|++++.+|+.+..++.| +|+++
T Consensus       453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence            999999999873   33679999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             cCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 047486          665 YNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDG  705 (776)
Q Consensus       665 ~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~~  705 (776)
                      +|++++.+|..     +..........+.+||+.|+|...+
T Consensus       532 ~N~l~~~~~~~-----~~~l~~L~~L~l~~N~~~c~c~~~~  567 (606)
T 3t6q_A          532 SNHISIILPSL-----LPILSQQRTINLRQNPLDCTCSNIY  567 (606)
T ss_dssp             SSCCCCCCGGG-----HHHHHTSSEEECTTCCEECSGGGHH
T ss_pred             CCcccccCHhh-----cccCCCCCEEeCCCCCccccCCcHH
Confidence            99999766642     3333334556788999999997543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5e-53  Score=500.51  Aligned_cols=549  Identities=22%  Similarity=0.217  Sum_probs=311.9

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccC-CCCCCCCCcccCCCCcEEEccCCcccccccccccCCC
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYL-PKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLT  135 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~  135 (776)
                      ++|++|+|++|.+++..|.+|.++++|++|++++| ...+.+ |..     +.++++|++|+|++|.+.+..|..|++++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n-~~~~~i~~~~-----f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ-YTPLTIDKEA-----FRNLPNLRILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTT-CCCCEECTTT-----TSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCC-CCccccCHHH-----hcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence            55555555555555555555555555555555555 333333 222     34444455555555555555555555555


Q ss_pred             CCCEEEccCCcccCCCchh--hcCCCCCCEEEccCCcCCCCCC-ccccCCCCCCEEEccCCcCCCcCCC-CCCC--CCCc
Q 047486          136 RATEIAFASNHFTGQLPHH--VSGLSYLTTFDLSGNYFQGGVP-SWLFTLPSLLSIDLSKNMLNGPIDL-FQLP--NSLQ  209 (776)
Q Consensus       136 ~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~--~~L~  209 (776)
                      +|++|+|++|.+++..|..  |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..+. +..+  ++|+
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~  177 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS  177 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence            5555555555555444333  5555555555555555554332 3455555555555555555443221 1111  4555


Q ss_pred             EEEccCCcCCCCCCccccCCCC------CCEEECCCCcCccccCccccC--CCCCCCEEeccCCCCCccccccccccccC
Q 047486          210 DVRLEENEIRGTIPNSTFQLVN------LTILDLSSNNLSGAIRFDQFS--KLKKLQFLDLSNNSLLSFTSSANISIKYS  281 (776)
Q Consensus       210 ~L~L~~n~i~~~~~~~~~~l~~------L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~  281 (776)
                      .|++++|.+.+..|..+..+++      |++|++++|.+.+.++.....  ...+++.+.++.+....   ..      .
T Consensus       178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~---~~------~  248 (844)
T 3j0a_A          178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---GF------G  248 (844)
T ss_dssp             CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC---SS------S
T ss_pred             eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc---cc------c
Confidence            5566666555555555444443      667777776665444422111  22456666666443211   00      0


Q ss_pred             CCCccEEeccCCCCCCc-chhhhC--CcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEe
Q 047486          282 LPSLKVLRFAYCNITEF-PGFLRN--SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLD  358 (776)
Q Consensus       282 l~~L~~L~l~~n~l~~l-p~~l~~--~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~  358 (776)
                                .+.+... +..+..  .++|+.|++++|.+.+.. ...+..+++|+.|++++|.++.+.+..+.      
T Consensus       249 ----------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------  311 (844)
T 3j0a_A          249 ----------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFY------  311 (844)
T ss_dssp             ----------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTT------
T ss_pred             ----------ccccCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhc------
Confidence                      0000000 011111  234555555555554322 22224455555555555544444332221      


Q ss_pred             ccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccC
Q 047486          359 LRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI  438 (776)
Q Consensus       359 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~  438 (776)
                                  .+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+++..
T Consensus       312 ------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          312 ------------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTIH  378 (844)
T ss_dssp             ------------TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCCS
T ss_pred             ------------CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCccc
Confidence                        123334444455555445555555666666666666666533333333333 5666666666655321


Q ss_pred             cccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCccc-chhhcCCCCcCEEEccCCcccccCCCCCCCc
Q 047486          439 HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF-PCWLGSLHELKILVLRSNRFYGPLCNSNITF  517 (776)
Q Consensus       439 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  517 (776)
                           .+++|+.|++++|+++. +|..   ..+++.|++++|++++.. +..+..+++|++|++++|++.+..+.. ...
T Consensus       379 -----~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~  448 (844)
T 3j0a_A          379 -----FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-TPS  448 (844)
T ss_dssp             -----SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS-SSC
T ss_pred             -----CCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc-ccc
Confidence                 25566666666666663 2322   345677777777776542 223456777777777777776543322 224


Q ss_pred             CCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc
Q 047486          518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH  597 (776)
Q Consensus       518 ~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  597 (776)
                      .+++|+.|++++|.+++..+......                                   ....++.|+.|+|++|+++
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~-----------------------------------~~~~l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETELCWD-----------------------------------VFEGLSHLQVLYLNHNYLN  493 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCCCSS-----------------------------------CSSCBCCEECCCCCHHHHT
T ss_pred             cCCccccccCCCCccccccccccchh-----------------------------------hhcCcccccEEECCCCccc
Confidence            46778888888888874332211000                                   0011578899999999999


Q ss_pred             ccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCC
Q 047486          598 GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQ  677 (776)
Q Consensus       598 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  677 (776)
                      +..|..|..+++|+.|+|++|++++..|..+.  ++|+.|||++|++++.+|..|.   +|+.+++++|++.+..+.   
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~---  565 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL---  565 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC---
T ss_pred             ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc---
Confidence            99999999999999999999999988777776  8999999999999999998764   688999999999876653   


Q ss_pred             CCcccccccccccCCCCCCCCCCCCCC
Q 047486          678 FNTFENDSYIGNIHLCGEPLTVRCSND  704 (776)
Q Consensus       678 ~~~~~~~~~~~n~~l~g~pl~~~C~~~  704 (776)
                       ..|......++..+||.|....|..+
T Consensus       566 -~~f~~~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          566 -STFINWLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             -CSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred             -HHHHHHHHhcCcccccccccCccCCc
Confidence             23444444567778888877788653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.1e-53  Score=485.53  Aligned_cols=537  Identities=19%  Similarity=0.172  Sum_probs=278.6

Q ss_pred             CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486           35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS  114 (776)
Q Consensus        35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~  114 (776)
                      ++++.+++.++.. |..+   ++++++|+|++|.+++..+.+|.++++|++|++++| .+.+..|..     +.++++|+
T Consensus        14 ~~~~c~~~~l~~i-p~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~-----~~~l~~L~   83 (606)
T 3vq2_A           14 ITYQCMDQKLSKV-PDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKA-----WHGLHHLS   83 (606)
T ss_dssp             TEEECTTSCCSSC-CTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCTTCC
T ss_pred             CceEccCCCcccC-CCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHH-----hhchhhcC
Confidence            3455555544443 3222   245555555555555444445555555555555555 454444433     33334455


Q ss_pred             EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCC
Q 047486          115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKN  193 (776)
Q Consensus       115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n  193 (776)
                      +|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            55555555555555555555555555555555554444555555555555555555553 34555555555555555555


Q ss_pred             cCCCcCCC-CCCCC----CCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          194 MLNGPIDL-FQLPN----SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       194 ~l~~~~~~-~~~~~----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      .+++..+. +..+.    .+++|++++|.+++..+..+ ...+|++|++++|.+.+......+.+++.|+.+++..+.+.
T Consensus       164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~  242 (606)
T 3vq2_A          164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK  242 (606)
T ss_dssp             CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             cceecChhhhhhhhccccccceeeccCCCcceeCcccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence            55543221 11111    23456666666653333333 33367777777776654444456666667766666544321


Q ss_pred             ccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEec-ccCccccccCCCcccCCccCCeEeCcCccccccc
Q 047486          269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDL-SNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE  347 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  347 (776)
                      ....            +..+.      ...+..+..+ .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.++.++
T Consensus       243 ~~~~------------l~~~~------~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~  301 (606)
T 3vq2_A          243 DERN------------LEIFE------PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE  301 (606)
T ss_dssp             TSCC------------CSCCC------GGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC
T ss_pred             cCCc------------ccccC------hHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh
Confidence            1100            00000      0011111111 3445555 45555555554  355566666666665554443


Q ss_pred             cccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEE
Q 047486          348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITL  427 (776)
Q Consensus       348 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L  427 (776)
                      .  +                  ..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+  .+..+. +|++|
T Consensus       302 ~--l------------------~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L  355 (606)
T 3vq2_A          302 D--V------------------PKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYL  355 (606)
T ss_dssp             C--C------------------CTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEE
T ss_pred             h--c------------------cccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCC-CCCEE
Confidence            1  1                  1122333344444444 2333 22 4445555555554333222  122222 45555


Q ss_pred             ECCCCcCCcc--CcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccc-hhhcCCCCcCEEEccCC
Q 047486          428 HLKNNSLEGH--IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP-CWLGSLHELKILVLRSN  504 (776)
Q Consensus       428 ~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n  504 (776)
                      ++++|.+++.  .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            5555554433  24444455555555555555443 33445555555555555555554444 34455555555555555


Q ss_pred             cccccCCCCCCCcCCCCccEEeCCCCcCCCC-CCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhh
Q 047486          505 RFYGPLCNSNITFPFQALRIIDLSHNEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL  583 (776)
Q Consensus       505 ~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (776)
                      ++.+..+...  ..+++|++|++++|.+++. +|.. +..                                       +
T Consensus       435 ~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~~---------------------------------------l  472 (606)
T 3vq2_A          435 NTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FAN---------------------------------------T  472 (606)
T ss_dssp             CCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CTT---------------------------------------C
T ss_pred             CCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hcc---------------------------------------C
Confidence            5554443332  3445555555555555442 2211 111                                       4


Q ss_pred             cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccc-cccccc
Q 047486          584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLN  662 (776)
Q Consensus       584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~  662 (776)
                      +.|+.|++++|++++..|..|+.+++|++|+|++|++++.+|..|.++++|++|||++|+++ .+|..+..++ +|++|+
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~  551 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN  551 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence            55667777777777777777777788888888888887777777777888888888888877 5666677775 478888


Q ss_pred             CccCcceecCC
Q 047486          663 LSYNRLWGRIP  673 (776)
Q Consensus       663 ls~N~l~g~iP  673 (776)
                      +++|++.+..|
T Consensus       552 l~~N~~~c~c~  562 (606)
T 3vq2_A          552 LTNNSVACICE  562 (606)
T ss_dssp             CCSCCCCCSST
T ss_pred             ccCCCcccCCc
Confidence            88777766544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-51  Score=473.76  Aligned_cols=543  Identities=19%  Similarity=0.173  Sum_probs=377.5

Q ss_pred             cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCE
Q 047486           60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATE  139 (776)
Q Consensus        60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  139 (776)
                      ++++.+++.++ .+|..+.  ++|++|++++| .+.+..+..     +.++++|++|++++|.+++..|.+|+++++|++
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFN-PLKILKSYS-----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CceEccCCCcc-cCCCCCC--CCcCEEECCCC-CcCEeChhh-----ccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            45666666555 4454433  45555555555 444433333     333333555555555555444445555555555


Q ss_pred             EEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCC
Q 047486          140 IAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR  219 (776)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~  219 (776)
                      |++++|.+++..|.+|+++++|++|++++|.+++..+..+++++                       +|++|++++|.++
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------------------~L~~L~L~~n~l~  141 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----------------------TLKKLNVAHNFIH  141 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-----------------------TCCEEECCSSCCC
T ss_pred             eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC-----------------------CCCEEeCCCCccc
Confidence            55555555544455555555555555555555444444444444                       5555555555554


Q ss_pred             C-CCCccccCCCCCCEEECCCCcCccccCccccCCCCCCC----EEeccCCCCCccccccccccccCCCCccEEeccCCC
Q 047486          220 G-TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQ----FLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCN  294 (776)
Q Consensus       220 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~----~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~  294 (776)
                      + .+|..+.++++|++|++++|.+.+ ++...+..+++|+    +|++++|.++.++...     ....+|++|++++|.
T Consensus       142 ~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~-----~~~~~L~~L~L~~n~  215 (606)
T 3vq2_A          142 SCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA-----FQGIKLHELTLRGNF  215 (606)
T ss_dssp             CCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT-----TTTCEEEEEEEESCC
T ss_pred             ceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCccc-----ccCceeeeeeccCCc
Confidence            3 457777778888888888887774 3335555555443    7888888776555433     223378888888887


Q ss_pred             CC--CcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEec-cCcccCCCCC--
Q 047486          295 IT--EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDL-RNNRIQGSIL--  369 (776)
Q Consensus       295 l~--~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l-~~n~l~~~~~--  369 (776)
                      ++  .+|.++.+++.|+.+++..+.+.+...         +..+  ....+.+..   -..++.+++ ..+.+.+.++  
T Consensus       216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~~~--~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~~~  281 (606)
T 3vq2_A          216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LEIF--EPSIMEGLC---DVTIDEFRLTYTNDFSDDIVKF  281 (606)
T ss_dssp             SCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CSCC--CGGGGTTGG---GSEEEEEEECCCTTCCGGGGSC
T ss_pred             cchhHHHHHhccccccccccccccccccCCc---------cccc--ChHHhhhhh---hccHhheecccccccccccccc
Confidence            75  456778888888888887655432110         0000  000000000   013445555 4445554443  


Q ss_pred             CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCcc
Q 047486          370 VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR  449 (776)
Q Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  449 (776)
                      ..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|. + .+. +|++|++++|...+..  .+..+++|+
T Consensus       282 ~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~  353 (606)
T 3vq2_A          282 HCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLP-FLKSLTLTMNKGSISF--KKVALPSLS  353 (606)
T ss_dssp             GGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCS-SCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred             ccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCC-ccceeeccCCcCccch--hhccCCCCC
Confidence            34678889999999886 455 888999999999999999 58884 4 554 8999999999665443  677899999


Q ss_pred             EEEcCCCcCcCC--CChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeC
Q 047486          450 SLDLNSNKLEGP--LPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDL  527 (776)
Q Consensus       450 ~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdL  527 (776)
                      +|++++|.+++.  .|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..+.. .+..+++|+.|++
T Consensus       354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l  431 (606)
T 3vq2_A          354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS-AFLSLEKLLYLDI  431 (606)
T ss_dssp             EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT-TTTTCTTCCEEEC
T ss_pred             EEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh-hhhccccCCEEEC
Confidence            999999999876  48899999999999999999886 5588999999999999999999876632 2367899999999


Q ss_pred             CCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc-cchhhhcc
Q 047486          528 SHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG-EIPEVLGN  606 (776)
Q Consensus       528 s~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~  606 (776)
                      ++|.+++..|..+ ..                                       ++.|+.|++++|.+++ .+|..++.
T Consensus       432 ~~n~l~~~~~~~~-~~---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~  471 (606)
T 3vq2_A          432 SYTNTKIDFDGIF-LG---------------------------------------LTSLNTLKMAGNSFKDNTLSNVFAN  471 (606)
T ss_dssp             TTSCCEECCTTTT-TT---------------------------------------CTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cCCCCCccchhhh-cC---------------------------------------CCCCCEEECCCCcCCCcchHHhhcc
Confidence            9999997666442 21                                       5678999999999998 47889999


Q ss_pred             CCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCccccccc
Q 047486          607 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSY  686 (776)
Q Consensus       607 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~  686 (776)
                      +++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++ .+|..  +..+..  .
T Consensus       472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~--~~~l~~--~  546 (606)
T 3vq2_A          472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI--LQHFPK--S  546 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC--GGGSCT--T
T ss_pred             CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh--Hhhhcc--c
Confidence            999999999999999999999999999999999999999999999999999999999999998 56764  222221  2


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCC
Q 047486          687 IGNIHLCGEPLTVRCSNDGLPEA  709 (776)
Q Consensus       687 ~~n~~l~g~pl~~~C~~~~~~~~  709 (776)
                      .....+.+||+.|+|...|...|
T Consensus       547 L~~l~l~~N~~~c~c~~~~~~~~  569 (606)
T 3vq2_A          547 LAFFNLTNNSVACICEHQKFLQW  569 (606)
T ss_dssp             CCEEECCSCCCCCSSTTHHHHTT
T ss_pred             CcEEEccCCCcccCCccHHHHHH
Confidence            34456788999999987554444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-51  Score=482.92  Aligned_cols=531  Identities=21%  Similarity=0.219  Sum_probs=375.6

Q ss_pred             cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccc-cccccCCCCCC
Q 047486           60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSI-PTSIGNLTRAT  138 (776)
Q Consensus        60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~  138 (776)
                      +..+.++++++ .+|.   -.++|++|+|++| .+++..|..     +.++++|++|++++|...+.+ |.+|+++++|+
T Consensus         7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N-~i~~i~~~~-----~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFN-YIRTVTASS-----FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             EEEEESCCCSS-CCCS---SCTTCCEEEEESC-CCCEECSSS-----CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             eEEEccCCCCC-CCCC---CCCCcCEEECCCC-cCCccChhH-----CcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            35677777777 5565   3468888888888 777666665     556666888888888655555 67788888888


Q ss_pred             EEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCcc--ccCCCCCCEEEccCCcCCCcCC--CCCCCCCCcEEEcc
Q 047486          139 EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSW--LFTLPSLLSIDLSKNMLNGPID--LFQLPNSLQDVRLE  214 (776)
Q Consensus       139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~  214 (776)
                      +|+|++|.+++..|.+|+++++|++|+|++|.+++..|..  +.++++|++|++++|.+.+..+  .+..+++|++|+++
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            8888888888777888888888888888888888755554  7788888888888888776432  34445777777777


Q ss_pred             CCcCCCCCCccccCC--CCCCEEECCCCcCccccCccccCCCCC------CCEEeccCCCCCccccccccccccCCCCcc
Q 047486          215 ENEIRGTIPNSTFQL--VNLTILDLSSNNLSGAIRFDQFSKLKK------LQFLDLSNNSLLSFTSSANISIKYSLPSLK  286 (776)
Q Consensus       215 ~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~~------L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~  286 (776)
                      +|.+++..+..+..+  ++|+.|++++|.+.+..+ ..+..+++      |++|++++|.+..                 
T Consensus       157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----------------  218 (844)
T 3j0a_A          157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTV-----------------  218 (844)
T ss_dssp             SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSST-----------------
T ss_pred             CCcCCeeCHHHcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCch-----------------
Confidence            777777777776666  677777777777765444 23333332      5555555554321                 


Q ss_pred             EEeccCCCCCCcchhhh---CCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccc-----cccccCEEe
Q 047486          287 VLRFAYCNITEFPGFLR---NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH-----PWMNITTLD  358 (776)
Q Consensus       287 ~L~l~~n~l~~lp~~l~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~  358 (776)
                                .++..+.   ....+..+.++.+.+....                ..+.+......     ..++++.|+
T Consensus       219 ----------~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~  272 (844)
T 3j0a_A          219 ----------DITGNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLD  272 (844)
T ss_dssp             ----------TTTSGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred             ----------hHHHHHHhhcCcccccceecccccccccc----------------cccccCCCChhhhhccccCCccEEE
Confidence                      1121111   1133444444432221000                00111111110     113455555


Q ss_pred             ccCcccCCCC---CCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCC
Q 047486          359 LRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE  435 (776)
Q Consensus       359 l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  435 (776)
                      +++|.+.+..   +..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..|..+..+. +|++|++++|.++
T Consensus       273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~  351 (844)
T 3j0a_A          273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIA  351 (844)
T ss_dssp             CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCC
T ss_pred             CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-CCCEEECCCCCCC
Confidence            5555544332   23467788888888888888888899999999999999999866677777665 7999999999998


Q ss_pred             ccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCC
Q 047486          436 GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNI  515 (776)
Q Consensus       436 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  515 (776)
                      +..+..|..+++|++|+|++|.+++..     .+++|+.|++++|+++.. |.   ...+++.|++++|++.+.... ..
T Consensus       352 ~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l-~~---~~~~l~~L~ls~N~l~~l~~~-~~  421 (844)
T 3j0a_A          352 IIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTL-PK---INLTANLIHLSENRLENLDIL-YF  421 (844)
T ss_dssp             CCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCC-CC---CCTTCCEEECCSCCCCSSTTH-HH
T ss_pred             ccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccc-cc---cccccceeecccCccccCchh-hh
Confidence            888888999999999999999988532     378899999999988743 33   256788999999988763211 11


Q ss_pred             CcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc
Q 047486          516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR  595 (776)
Q Consensus       516 ~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  595 (776)
                      ...+++|+.|++++|++++..+...+..                                       ++.|+.|++++|.
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~---------------------------------------~~~L~~L~Ls~N~  462 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTPSE---------------------------------------NPSLEQLFLGENM  462 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------------------CTTCCBCEEESCC
T ss_pred             hhcCCccceeeCCCCccccccccccccc---------------------------------------CCccccccCCCCc
Confidence            2367889999999999886544322211                                       4678999999999


Q ss_pred             cc-----ccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          596 FH-----GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       596 l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      ++     +..+..|..+++|+.|+|++|++++.+|..|.++++|+.|||++|++++..|..+.  ++|+.|++++|+++|
T Consensus       463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~  540 (844)
T 3j0a_A          463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA  540 (844)
T ss_dssp             CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred             cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence            97     45567789999999999999999999999999999999999999999988777776  899999999999999


Q ss_pred             cCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047486          671 RIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSND  704 (776)
Q Consensus       671 ~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~  704 (776)
                      .+|..  +..+...      .+.|||+.|+|...
T Consensus       541 ~~~~~--~~~L~~l------~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          541 PNPDV--FVSLSVL------DITHNKFICECELS  566 (844)
T ss_dssp             CCSCC--CSSCCEE------EEEEECCCCSSSCC
T ss_pred             CChhH--hCCcCEE------EecCCCcccccccH
Confidence            88854  3333333      44556777777643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3e-47  Score=433.91  Aligned_cols=254  Identities=18%  Similarity=0.227  Sum_probs=215.4

Q ss_pred             CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486          372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  451 (776)
                      +++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|..  .+ ++|++|++++|.+.+..+.  ..+++|++|
T Consensus       281 l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~--~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L  352 (570)
T 2z63_A          281 LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTL--KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFL  352 (570)
T ss_dssp             GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBC--BC-SSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred             cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcc--cc-cccCEEeCcCCcccccccc--ccCCCCCEE
Confidence            567788888888877 577778888 9999999999988 77763  33 4799999999988776654  678999999


Q ss_pred             EcCCCcCcCCC--ChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCC
Q 047486          452 DLNSNKLEGPL--PRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH  529 (776)
Q Consensus       452 ~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~  529 (776)
                      ++++|.+++..  |..+..+++|++|++++|++.+..+. +..+++|++|++++|++.+..+.. .+..+++|++|++++
T Consensus       353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~  430 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISH  430 (570)
T ss_dssp             ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECTT
T ss_pred             eCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCcC
Confidence            99999998664  77889999999999999999876665 889999999999999998765532 236788999999999


Q ss_pred             CcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc-ccchhhhccCC
Q 047486          530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH-GEIPEVLGNFK  608 (776)
Q Consensus       530 n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~  608 (776)
                      |.+++..|.. +..                                       ++.|+.|++++|.++ +.+|..++.++
T Consensus       431 n~l~~~~~~~-~~~---------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          431 THTRVAFNGI-FNG---------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             SCCEECCTTT-TTT---------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             Ccccccchhh-hhc---------------------------------------CCcCcEEECcCCcCccccchhhhhccc
Confidence            9988765543 221                                       567899999999998 67899999999


Q ss_pred             CCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCC
Q 047486          609 SLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG  675 (776)
Q Consensus       609 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  675 (776)
                      +|+.|++++|++++..|..|.++++|++|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            9999999999999988999999999999999999999988889999999999999999999988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-46  Score=427.01  Aligned_cols=487  Identities=18%  Similarity=0.191  Sum_probs=264.3

Q ss_pred             EEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEE
Q 047486           62 LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIA  141 (776)
Q Consensus        62 L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  141 (776)
                      .+.+++.++ .+|..+.  ++|++|++++| .+.+..|..     +.++++|++|++++|.+++..|.+|+++++|++|+
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFN-KITYIGHGD-----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSS-CCCEECSST-----TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCC-ccCccChhh-----hhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            344455554 4444433  45555555555 555444433     33444466666666666555555666666666666


Q ss_pred             ccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCcCCCcCC--CCCCCCCCcEEEccCCcC
Q 047486          142 FASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKNMLNGPID--LFQLPNSLQDVRLEENEI  218 (776)
Q Consensus       142 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~n~i  218 (776)
                      +++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+..+  .+..+++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            66666665555556666666666666666654 234556666666666666665333221  233346666666666666


Q ss_pred             CCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCC-
Q 047486          219 RGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE-  297 (776)
Q Consensus       219 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  297 (776)
                      ++..|..+..+++|++|++++|.+. .++...+..+++|++|++++|+++.++... ......+++|+.|++++|.++. 
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~  238 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDE  238 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC-CSSCCCCCCCCEEEEESCEEEHH
T ss_pred             cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc-cchhhhhhcccceeccccccchh
Confidence            6666667777777777777777665 444344455667777777777654432110 0111234455555555554431 


Q ss_pred             ----cchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCC
Q 047486          298 ----FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPP  373 (776)
Q Consensus       298 ----lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  373 (776)
                          ++..+..+++|+.+++++|.+.+                         ......            .....+...+
T Consensus       239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~-------------------------~~~~~~------------~~~~~~~~l~  281 (549)
T 2z81_A          239 SFNELLKLLRYILELSEVEFDDCTLNG-------------------------LGDFNP------------SESDVVSELG  281 (549)
T ss_dssp             HHHHHHGGGGGCTTCCEEEEESCEEEC-------------------------CSCCCC------------CTTTCCCCCT
T ss_pred             HHHHHHHHhhhhccccccccccccccc-------------------------cccccc------------cchhhhhhhc
Confidence                22223344455555555554432                         110000            0000111223


Q ss_pred             CCcEEEccCCcCcc-----CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCc---ccccCC
Q 047486          374 STKVLLVSNNKLSG-----KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH---DTFANA  445 (776)
Q Consensus       374 ~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l  445 (776)
                      +++.+++.++.+..     ..+..+...++|++|++++|.+. .+|..++...++|++|++++|.+++..+   ..+..+
T Consensus       282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l  360 (549)
T 2z81_A          282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW  360 (549)
T ss_dssp             TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred             ccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence            33344444333321     11222233456677777777665 6666554323367777777776665543   235556


Q ss_pred             CCccEEEcCCCcCcCCCC--hhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCcc
Q 047486          446 SHLRSLDLNSNKLEGPLP--RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR  523 (776)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  523 (776)
                      ++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+               
T Consensus       361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~---------------  424 (549)
T 2z81_A          361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---------------  424 (549)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC---------------
T ss_pred             ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc---------------
Confidence            666666666666654432  34556666666666666665 344445555555555555554432               


Q ss_pred             EEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhh
Q 047486          524 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV  603 (776)
Q Consensus       524 ~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  603 (776)
                                  +|...                                          .+.|+.|++++|++++.+   
T Consensus       425 ------------l~~~~------------------------------------------~~~L~~L~Ls~N~l~~~~---  447 (549)
T 2z81_A          425 ------------VKTCI------------------------------------------PQTLEVLDVSNNNLDSFS---  447 (549)
T ss_dssp             ------------CCTTS------------------------------------------CTTCSEEECCSSCCSCCC---
T ss_pred             ------------ccchh------------------------------------------cCCceEEECCCCChhhhc---
Confidence                        22111                                          124556666666666532   


Q ss_pred             hccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486          604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       604 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                       ..+++|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|++|++++|++.|..|
T Consensus       448 -~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 -LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             35677777777777776 4554 4567777777777777777777777777777777777777776655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-47  Score=431.22  Aligned_cols=513  Identities=21%  Similarity=0.203  Sum_probs=355.1

Q ss_pred             CCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEE
Q 047486            7 LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQIL   86 (776)
Q Consensus         7 L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L   86 (776)
                      .++++.++.+++    .+|..+.  +++++|++++|.+.+..+..+..+ ++|++|+|++|.+++..+..|.++++|++|
T Consensus         9 ~~~~~c~~~~l~----~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L   81 (570)
T 2z63_A            9 NITYQCMELNFY----KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (570)
T ss_dssp             TTEEECCSSCCS----SCCSSSC--SSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEeCCCCcc----ccCCCcc--ccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEE
Confidence            456777766663    3443322  568888888888888777778888 888888888888887777778888888888


Q ss_pred             eccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccC-CCchhhcCCCCCCEEE
Q 047486           87 FLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG-QLPHHVSGLSYLTTFD  165 (776)
Q Consensus        87 ~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~  165 (776)
                      ++++| .+.+..|..     +..+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|+
T Consensus        82 ~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  155 (570)
T 2z63_A           82 ILTGN-PIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (570)
T ss_dssp             ECTTC-CCCEECTTT-----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             eCcCC-cCCccCHhh-----hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence            88888 777655555     5556668888888888886555568888888888888888876 3678888888888888


Q ss_pred             ccCCcCCCCCCccccCCCCC----CEEEccCCcCCCcCCC-CCCCCCCcEEEccCCcCCC-CCCccccCCCCCCEEECCC
Q 047486          166 LSGNYFQGGVPSWLFTLPSL----LSIDLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRG-TIPNSTFQLVNLTILDLSS  239 (776)
Q Consensus       166 L~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~  239 (776)
                      +++|.+++..+..++.+++|    ++|++++|.+.+..+. +.. .+|+.|++++|.... .++..+..++.++.+.+..
T Consensus       156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  234 (570)
T 2z63_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  234 (570)
T ss_dssp             CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred             CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeecc
Confidence            88888887777777777777    7777777777664433 233 366677766654321 2233444555555544432


Q ss_pred             CcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCC--CCccEEeccCC-CCC-CcchhhhCCcccceEeccc
Q 047486          240 NNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL--PSLKVLRFAYC-NIT-EFPGFLRNSEELYLLDLSN  315 (776)
Q Consensus       240 n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l--~~L~~L~l~~n-~l~-~lp~~l~~~~~L~~L~L~~  315 (776)
                      ..+.         ....++.  +....            +..+  -.++.+++.++ .+. .+|..+..+++|+.|++++
T Consensus       235 ~~~~---------~~~~l~~--~~~~~------------~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  291 (570)
T 2z63_A          235 GEFR---------NEGNLEK--FDKSA------------LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS  291 (570)
T ss_dssp             EECC---------CCSSCEE--CCTTT------------TGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred             cccc---------Cchhhhh--cchhh------------hccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence            2211         0001110  00000            0011  12344445444 222 3445566667777777777


Q ss_pred             CccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccC
Q 047486          316 NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICS  395 (776)
Q Consensus       316 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  395 (776)
                      |.+. .+|... ..+ +|++|++++|.++.++...++                     +|+.|++++|.+.+..+.  ..
T Consensus       292 ~~l~-~l~~~~-~~~-~L~~L~l~~n~~~~l~~~~l~---------------------~L~~L~l~~n~~~~~~~~--~~  345 (570)
T 2z63_A          292 VTIE-RVKDFS-YNF-GWQHLELVNCKFGQFPTLKLK---------------------SLKRLTFTSNKGGNAFSE--VD  345 (570)
T ss_dssp             CEEC-SCCBCC-SCC-CCSEEEEESCBCSSCCBCBCS---------------------SCCEEEEESCBSCCBCCC--CB
T ss_pred             ccch-hhhhhh-ccC-CccEEeeccCcccccCccccc---------------------ccCEEeCcCCcccccccc--cc
Confidence            7666 455544 344 666666666666554444444                     445555555555444443  56


Q ss_pred             CCCCCEEEccCCcCcccC--CchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCC
Q 047486          396 LSSLQYLSLSDNNLSGTI--PPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKL  472 (776)
Q Consensus       396 ~~~L~~L~Ls~n~l~~~~--p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L  472 (776)
                      +++|++|++++|.+++..  |..+..+. +|++|++++|.+++..+. +..+++|++|++++|.+++..+ ..+..+++|
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             CCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            778888888888877433  55666665 799999999888876555 8889999999999999987766 578889999


Q ss_pred             cEEEcCCCccCcccchhhcCCCCcCEEEccCCccc-ccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhcc
Q 047486          473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY-GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD  551 (776)
Q Consensus       473 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~  551 (776)
                      ++|++++|++.+..|..+..+++|++|++++|++. +.+|...  ..                                 
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~---------------------------------  468 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TE---------------------------------  468 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TT---------------------------------
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh--hc---------------------------------
Confidence            99999999999888889999999999999988876 3343222  22                                 


Q ss_pred             ccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccccc
Q 047486          552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM  631 (776)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  631 (776)
                                                     ++.|+.|++++|++++..|..|+.+++|+.|++++|++++..|..|.++
T Consensus       469 -------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          469 -------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             -------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -------------------------------ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence                                           3455666777777776778888999999999999999999888889999


Q ss_pred             CCCcEEeccCccCcCCCch
Q 047486          632 TALESLDLSFNKLDGRIPE  650 (776)
Q Consensus       632 ~~L~~L~Ls~N~l~~~~p~  650 (776)
                      ++|+.|++++|++++..|.
T Consensus       518 ~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          518 TSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCCEEECCSSCBCCCTTT
T ss_pred             cCCcEEEecCCcccCCCcc
Confidence            9999999999999988775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.3e-46  Score=422.04  Aligned_cols=493  Identities=18%  Similarity=0.203  Sum_probs=292.7

Q ss_pred             CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCE
Q 047486            6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQI   85 (776)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~   85 (776)
                      ...+.|.+++.++    .+|..+.  ++|++|++++|.+.+..|..+..+ ++|++|++++|.+++..|.+|.++++|++
T Consensus         6 ~~~~c~~~~~~l~----~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            6 ASGVCDGRSRSFT----SIPSGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             TTSEEECTTSCCS----SCCSCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCceEECCCCccc----cccccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCE
Confidence            3444556655553    3333222  566666666666666555556666 66666666666666555566666666666


Q ss_pred             EeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccc-cccccccCCCCCCEEEccCCcccCCCc-hhhcCCCCCCE
Q 047486           86 LFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG-SIPTSIGNLTRATEIAFASNHFTGQLP-HHVSGLSYLTT  163 (776)
Q Consensus        86 L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~  163 (776)
                      |++++| .+.+..|..     +.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..|.++++|++
T Consensus        79 L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  152 (549)
T 2z81_A           79 LDLSDN-HLSSLSSSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE  152 (549)
T ss_dssp             EECTTS-CCCSCCHHH-----HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             EECCCC-ccCccCHHH-----hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence            666666 555444333     3344446666666666654 234556666666666666665332333 45566666666


Q ss_pred             EEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCC-CCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcC
Q 047486          164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLF-QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNL  242 (776)
Q Consensus       164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  242 (776)
                      |++++|.+++..|..++.+++|++|++++|.+....+.+ ..+++|++|++++|.+++....                  
T Consensus       153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------------  214 (549)
T 2z81_A          153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS------------------  214 (549)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC------------------
T ss_pred             eeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc------------------
Confidence            666666666555666666666666666655543322111 1124455555555544432100                  


Q ss_pred             ccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcch-------hhhCCcccceEeccc
Q 047486          243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG-------FLRNSEELYLLDLSN  315 (776)
Q Consensus       243 ~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-------~l~~~~~L~~L~L~~  315 (776)
                          +......+++|++|++++|.+..............+++|+.+++++|.+..+++       .+..+++|+.|++.+
T Consensus       215 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  290 (549)
T 2z81_A          215 ----PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR  290 (549)
T ss_dssp             ----CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred             ----ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence                111223344455555555443221111111112234555666665555433221       123344455555554


Q ss_pred             CccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccc-c
Q 047486          316 NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-C  394 (776)
Q Consensus       316 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~  394 (776)
                      +.+.....   +..++.                                   .....++++.|++++|.+. .+|..+ .
T Consensus       291 ~~i~~~~~---~~~l~~-----------------------------------~~~~~~~L~~L~l~~n~l~-~ip~~~~~  331 (549)
T 2z81_A          291 LHIPQFYL---FYDLST-----------------------------------VYSLLEKVKRITVENSKVF-LVPCSFSQ  331 (549)
T ss_dssp             CBCSCGGG---SCCCCH-----------------------------------HHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred             cccchhhh---cccchh-----------------------------------hhhhcccceEEEeccCccc-cCCHHHHh
Confidence            43321100   000000                                   0001245667777777776 566655 5


Q ss_pred             CCCCCCEEEccCCcCcccCCch---hhhcCCCccEEECCCCcCCccCc--ccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486          395 SLSSLQYLSLSDNNLSGTIPPC---LGNFSTELITLHLKNNSLEGHIH--DTFANASHLRSLDLNSNKLEGPLPRSLAKC  469 (776)
Q Consensus       395 ~~~~L~~L~Ls~n~l~~~~p~~---~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  469 (776)
                      .+++|++|++++|++.+.+|..   +..++ +|++|++++|.+++..+  ..+..+++|++|++++|+++ .+|..+..+
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             cCccccEEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            7999999999999998766532   44444 89999999999987653  56889999999999999999 678888999


Q ss_pred             CCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhh
Q 047486          470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKN  549 (776)
Q Consensus       470 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~  549 (776)
                      ++|++|++++|+++... ..+  .++|++|++++|++++..      ..                               
T Consensus       410 ~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~------~~-------------------------------  449 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS------LF-------------------------------  449 (549)
T ss_dssp             TTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC------CC-------------------------------
T ss_pred             ccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc------cc-------------------------------
Confidence            99999999999987532 211  134555555555544321      12                               


Q ss_pred             ccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccc
Q 047486          550 VDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFE  629 (776)
Q Consensus       550 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  629 (776)
                                                       ++.|+.|++++|+++ .+|. ...+++|+.|+|++|++++.+|..|.
T Consensus       450 ---------------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~  494 (549)
T 2z81_A          450 ---------------------------------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD  494 (549)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred             ---------------------------------CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence                                             345566666666666 4454 45688999999999999998888899


Q ss_pred             ccCCCcEEeccCccCcCCCc
Q 047486          630 NMTALESLDLSFNKLDGRIP  649 (776)
Q Consensus       630 ~l~~L~~L~Ls~N~l~~~~p  649 (776)
                      .+++|+.|++++|++++..|
T Consensus       495 ~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          495 RLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             GCTTCCEEECCSSCBCCCHH
T ss_pred             cCcccCEEEecCCCccCCCc
Confidence            99999999999999988776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-46  Score=429.34  Aligned_cols=363  Identities=23%  Similarity=0.270  Sum_probs=231.5

Q ss_pred             CCcccccccccccCCCCCCEEEccCCcccCC-----------------Cchhhc--CCCCCCEEEccCCcCCCCCCcccc
Q 047486          120 FCNFTGSIPTSIGNLTRATEIAFASNHFTGQ-----------------LPHHVS--GLSYLTTFDLSGNYFQGGVPSWLF  180 (776)
Q Consensus       120 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~  180 (776)
                      .|++++ +|..++++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..++
T Consensus       192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            578888 899999999999999999999985                 888888  999999999999999999999999


Q ss_pred             CCCCCCEEEccCCc-CCC-cCCC-CC------CCCCCcEEEccCCcCCCCCCc--cccCCCCCCEEECCCCcCccccCcc
Q 047486          181 TLPSLLSIDLSKNM-LNG-PIDL-FQ------LPNSLQDVRLEENEIRGTIPN--STFQLVNLTILDLSSNNLSGAIRFD  249 (776)
Q Consensus       181 ~l~~L~~L~l~~n~-l~~-~~~~-~~------~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~i~~~  249 (776)
                      ++++|++|++++|. +++ .+|. +.      .+++|++|++++|.++ .+|.  .+..+++|++|++++|.+.|.+|  
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--  347 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--  347 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--
Confidence            99999999999997 765 3332 11      1256666666666665 5555  56666666666666666655554  


Q ss_pred             ccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcc-cceEecccCccccccCCCccc
Q 047486          250 QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEE-LYLLDLSNNRIQGRISKSDSP  328 (776)
Q Consensus       250 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~  328 (776)
                      .+..+++|++|++++|.                            ++.+|..+..+++ |+.|++++|.++ .+|..+ .
T Consensus       348 ~~~~l~~L~~L~L~~N~----------------------------l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~-~  397 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQ----------------------------ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF-D  397 (636)
T ss_dssp             CCEEEEEESEEECCSSE----------------------------EEECCTTSEEECTTCCEEECCSSCCS-SCCSCC-C
T ss_pred             hhCCCCCCCEEECCCCc----------------------------cccccHhhhhhcccCcEEEccCCcCc-ccchhh-h
Confidence            44444444444444444                            3334555555555 666666666555 444322 1


Q ss_pred             CCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCcccc-------CCCCCCE
Q 047486          329 GWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC-------SLSSLQY  401 (776)
Q Consensus       329 ~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~  401 (776)
                      ..+                                        +++|+.|++++|.+.+.+|..+.       .+++|++
T Consensus       398 ~~~----------------------------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          398 AKS----------------------------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             TTC----------------------------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             hcc----------------------------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            111                                        11233444444444444444444       4556777


Q ss_pred             EEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCC-------CCccEEEcCCCcCcCCCChhhh--cCCCC
Q 047486          402 LSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA-------SHLRSLDLNSNKLEGPLPRSLA--KCIKL  472 (776)
Q Consensus       402 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~l~--~l~~L  472 (776)
                      |++++|+++ .+|..++...++|++|++++|.++.+.+..+...       ++|+.|+|++|+++ .+|..+.  .+++|
T Consensus       438 L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  515 (636)
T 4eco_A          438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL  515 (636)
T ss_dssp             EECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred             EECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence            777777776 5665555433366777777766664333333322       26666666666666 4555554  66666


Q ss_pred             cEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccc
Q 047486          473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDE  552 (776)
Q Consensus       473 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~  552 (776)
                      +.|++++|++++ +|..+..+++|++|++++|+                    +                          
T Consensus       516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~--------------------~--------------------------  548 (636)
T 4eco_A          516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR--------------------D--------------------------  548 (636)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB--------------------C--------------------------
T ss_pred             CEEECCCCCCCC-cChhhhcCCCCCEEECCCCc--------------------c--------------------------
Confidence            666666666665 55555555555555555443                    1                          


Q ss_pred             cCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccC
Q 047486          553 QGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT  632 (776)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  632 (776)
                                                            +++|++.+.+|..++.+++|++|+|++|++ +.+|..+.  +
T Consensus       549 --------------------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~  587 (636)
T 4eco_A          549 --------------------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P  587 (636)
T ss_dssp             --------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred             --------------------------------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence                                                  234555556677777788888888888888 46777655  6


Q ss_pred             CCcEEeccCccCcC
Q 047486          633 ALESLDLSFNKLDG  646 (776)
Q Consensus       633 ~L~~L~Ls~N~l~~  646 (776)
                      +|+.|||++|++..
T Consensus       588 ~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          588 NISVLDIKDNPNIS  601 (636)
T ss_dssp             TCCEEECCSCTTCE
T ss_pred             cCCEEECcCCCCcc
Confidence            78888888887663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-46  Score=428.74  Aligned_cols=473  Identities=19%  Similarity=0.236  Sum_probs=291.0

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCC------cccCCCCcEEEccCCccccccccc
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSP------LRELDLLSVLDIGFCNFTGSIPTS  130 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~------l~~L~~L~~L~Ls~n~l~~~~~~~  130 (776)
                      .+++.|+|+++.+.|.+|.+++++++|++|+|++| .+... +..+....      -..+..|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N-~~~~~-~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH-GEKVN-ERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCG-GGGGT-CCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCC-ccccC-CccccccccccCchHHHHHHHH-hhHHHhhhccCchhh
Confidence            47999999999999999999999999999999998 54211 00011000      01133366 777777777766665


Q ss_pred             ccCC-CCCCEEEccCCcccCCCchhhcCCCCCCEEEc--cCCcCCCCCCccccCCCCCCEEEccCCcCCCc---------
Q 047486          131 IGNL-TRATEIAFASNHFTGQLPHHVSGLSYLTTFDL--SGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP---------  198 (776)
Q Consensus       131 l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---------  198 (776)
                      +..+ ..+..+++....+..      .....++.+.+  .+|.+++ +|..++++++|++|++++|.+++.         
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  230 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE  230 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence            5421 111122222111110      01112222222  2456665 666677777777777777776662         


Q ss_pred             ---------CCCCC--CCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCc-Ccc-ccCccccCCCCCCCEEeccCC
Q 047486          199 ---------IDLFQ--LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN-LSG-AIRFDQFSKLKKLQFLDLSNN  265 (776)
Q Consensus       199 ---------~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~i~~~~~~~l~~L~~L~Ls~n  265 (776)
                               ++.+.  .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+| ..+..+           
T Consensus       231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L-----------  298 (636)
T 4eco_A          231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK-DDWQAL-----------  298 (636)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH-HHHHHH-----------
T ss_pred             ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch-HHHHhh-----------
Confidence                     22222  22444444444444444555555555555555555555 544 333 122211           


Q ss_pred             CCCccccccccccccCCCCccEEeccCCCCCCcch--hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccc
Q 047486          266 SLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG--FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFM  343 (776)
Q Consensus       266 ~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  343 (776)
                                 ..+..+++|++|++++|.++.+|.  .+..+++|+.|++++|.++|.+|  .+..+++|++|++++|.+
T Consensus       299 -----------~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l  365 (636)
T 4eco_A          299 -----------ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQI  365 (636)
T ss_dssp             -----------HHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEE
T ss_pred             -----------hccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcc
Confidence                       001123566666666666666777  78888888888888888887777  335555555554444433


Q ss_pred             cccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCC-CCEEEccCCcCcccCCchhhhcC-
Q 047486          344 THIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSS-LQYLSLSDNNLSGTIPPCLGNFS-  421 (776)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~-  421 (776)
                      +                                           .+|..+..+++ |++|++++|.++ .+|..+.... 
T Consensus       366 ~-------------------------------------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          366 T-------------------------------------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             E-------------------------------------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             c-------------------------------------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence            3                                           34455666666 777777777766 6665544321 


Q ss_pred             CCccEEECCCCcCCccCccccc-------CCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCC
Q 047486          422 TELITLHLKNNSLEGHIHDTFA-------NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLH  494 (776)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  494 (776)
                      ++|++|++++|.+++..|..+.       .+++|++|+|++|.+++..+..+..+++|++|++++|+++...+..+....
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence            2466666666666666666665       556677777777777644444455566666666666666632222222111


Q ss_pred             CcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccc-cChHHhhhccccCceecccCccccceEEEEec
Q 047486          495 ELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF-PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQ  573 (776)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~-~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  573 (776)
                      .                   ....+++|+.|++++|+++ .+|..++ ..                              
T Consensus       482 ~-------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------------------  511 (636)
T 4eco_A          482 E-------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATT------------------------------  511 (636)
T ss_dssp             E-------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTT------------------------------
T ss_pred             c-------------------cccccCCccEEECcCCcCC-ccChhhhhcc------------------------------
Confidence            0                   0012336777777777777 5665432 11                              


Q ss_pred             cchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeC------CCCcCcccCCccccccCCCcEEeccCccCcCC
Q 047486          574 GHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNL------SHNSLTGNIPVSFENMTALESLDLSFNKLDGR  647 (776)
Q Consensus       574 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  647 (776)
                               ++.|+.|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+.++++|++|||++|++ +.
T Consensus       512 ---------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~  580 (636)
T 4eco_A          512 ---------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK  580 (636)
T ss_dssp             ---------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             ---------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence                     5677888888888887 7888889999999999      56889999999999999999999999999 68


Q ss_pred             CchhhccccccccccCccCcceec
Q 047486          648 IPEQLLSVTALALLNLSYNRLWGR  671 (776)
Q Consensus       648 ~p~~l~~l~~L~~L~ls~N~l~g~  671 (776)
                      +|..+.  ++|+.|++++|++...
T Consensus       581 ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          581 VNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCSCCC--TTCCEEECCSCTTCEE
T ss_pred             cCHhHh--CcCCEEECcCCCCccc
Confidence            888766  7999999999988743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.3e-44  Score=419.73  Aligned_cols=450  Identities=23%  Similarity=0.247  Sum_probs=267.1

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEec-cCCCCccccCCCCCCCC------------------------------
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFL-NLNSQLTGYLPKSNWSS------------------------------  105 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~p~~~~~~------------------------------  105 (776)
                      .+++.|+|+++.+.|.+|.+++++++|++|+| ++| .+.|..|......                              
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            57888888888888888888888888888888 666 6666533210000                              


Q ss_pred             --------------Cc--ccCCCCcEEEcc--CCcccccccccccCCCCCCEEEccCCcccC-----------------C
Q 047486          106 --------------PL--RELDLLSVLDIG--FCNFTGSIPTSIGNLTRATEIAFASNHFTG-----------------Q  150 (776)
Q Consensus       106 --------------~l--~~L~~L~~L~Ls--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~  150 (776)
                                    ..  .....++.+.+.  .|++++ +|..|+++++|++|+|++|.+++                 .
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                          00  011112333333  366666 67777777777777777777776                 2


Q ss_pred             Cchhhc--CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCc-CCCcCCCCCCCCCCcEEEccCCcCCCCCCcccc
Q 047486          151 LPHHVS--GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNM-LNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF  227 (776)
Q Consensus       151 ~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~  227 (776)
                      +|..++  ++++|++|+|++|.+.+.+|..++++++|++|++++|. +++.                      .+|..++
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~----------------------~iP~~i~  538 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA----------------------QLKADWT  538 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH----------------------HHHHHHH
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc----------------------cchHHHH
Confidence            666655  77777777777777777777777777777777777776 5540                      2222222


Q ss_pred             -------CCCCCCEEECCCCcCccccCc-cccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc
Q 047486          228 -------QLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP  299 (776)
Q Consensus       228 -------~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp  299 (776)
                             .+++|++|++++|.+. .+|. ..+.++++|++|++++|.++.++      .+..+++|+.|++++|.++.+|
T Consensus       539 ~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp------~~~~L~~L~~L~Ls~N~l~~lp  611 (876)
T 4ecn_A          539 RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE------AFGTNVKLTDLKLDYNQIEEIP  611 (876)
T ss_dssp             HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC------CCCTTSEESEEECCSSCCSCCC
T ss_pred             hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch------hhcCCCcceEEECcCCccccch
Confidence                   2224555555555444 4431 14444555555555555443222      1234555555555555555566


Q ss_pred             hhhhCCcc-cceEecccCccccccCCCcccCCc--cCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCc
Q 047486          300 GFLRNSEE-LYLLDLSNNRIQGRISKSDSPGWK--SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTK  376 (776)
Q Consensus       300 ~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~  376 (776)
                      ..+..+++ |+.|++++|.++ .+|..+ ..++  +|+.|++++|.+++..                     |       
T Consensus       612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~-~~~~~~~L~~L~Ls~N~l~g~i---------------------p-------  661 (876)
T 4ecn_A          612 EDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSVYVMGSVDFSYNKIGSEG---------------------R-------  661 (876)
T ss_dssp             TTSCEECTTCCEEECCSSCCC-SCCSCC-CTTCSSCEEEEECCSSCTTTTS---------------------S-------
T ss_pred             HHHhhccccCCEEECcCCCCC-cCchhh-hccccCCCCEEECcCCcCCCcc---------------------c-------
Confidence            66666776 777777777776 555432 2221  1333333333322211                     0       


Q ss_pred             EEEccCCcCccCCCcccc--CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCccccc-------CCCC
Q 047486          377 VLLVSNNKLSGKIPPSIC--SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA-------NASH  447 (776)
Q Consensus       377 ~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------~l~~  447 (776)
                                 .++..+.  .+++|+.|++++|.+. .+|..++...++|+.|++++|.++.+.+..+.       ++++
T Consensus       662 -----------~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~  729 (876)
T 4ecn_A          662 -----------NISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL  729 (876)
T ss_dssp             -----------SCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred             -----------cchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence                       0001111  2235666666666665 55555543333566666666666533333332       2236


Q ss_pred             ccEEEcCCCcCcCCCChhhh--cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEE
Q 047486          448 LRSLDLNSNKLEGPLPRSLA--KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII  525 (776)
Q Consensus       448 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  525 (776)
                      |+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++|+                    
T Consensus       730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~--------------------  787 (876)
T 4ecn_A          730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR--------------------  787 (876)
T ss_dssp             CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB--------------------
T ss_pred             ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC--------------------
Confidence            777777777776 4555554  66677777777776665 45556566666666555543                    


Q ss_pred             eCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhc
Q 047486          526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG  605 (776)
Q Consensus       526 dLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  605 (776)
                      +                                                                +++|++.+.+|..|+
T Consensus       788 ~----------------------------------------------------------------ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          788 D----------------------------------------------------------------AEGNRILRQWPTGIT  803 (876)
T ss_dssp             C----------------------------------------------------------------TTCCBCCCCCCTTGG
T ss_pred             C----------------------------------------------------------------cccccccccChHHHh
Confidence            1                                                                234555666777788


Q ss_pred             cCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcc
Q 047486          606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL  668 (776)
Q Consensus       606 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  668 (776)
                      .+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++
T Consensus       804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            888899999999988 57887765  5899999999988877667776666667777777765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.3e-44  Score=412.91  Aligned_cols=533  Identities=19%  Similarity=0.180  Sum_probs=365.6

Q ss_pred             CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486           35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS  114 (776)
Q Consensus        35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~  114 (776)
                      ++.+-++..++.+ |..   +|+++++|+|++|.|++..+.+|.++++|++|+|++| .+.+..|..     |.++++|+
T Consensus        34 ~~~~c~~~~l~~v-P~~---lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-----f~~L~~L~  103 (635)
T 4g8a_A           34 ITYQCMELNFYKI-PDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLS  103 (635)
T ss_dssp             TEEECTTSCCSSC-CSS---SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCTTCC
T ss_pred             CEEECCCCCcCcc-CCC---CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhH-----hcCCCCCC
Confidence            3455555556554 543   4578999999999998777788999999999999999 887655555     66667799


Q ss_pred             EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCC
Q 047486          115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKN  193 (776)
Q Consensus       115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n  193 (776)
                      +|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|
T Consensus       104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             EEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            99999999987777788999999999999999987777789999999999999999875 45788888999999999999


Q ss_pred             cCCCcCCC-C----CCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          194 MLNGPIDL-F----QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       194 ~l~~~~~~-~----~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      .+++..+. +    ........++++.|.+... +........++.+++.+|.....+....+..++.++...+..+...
T Consensus       184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~  262 (635)
T 4g8a_A          184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR  262 (635)
T ss_dssp             CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred             cccccccccccchhhhhhhhhhhhcccCccccc-CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence            88764432 2    2223455778888887743 3334444566777887776654444456666777766655433211


Q ss_pred             ccccccccccccCCCCccEEeccCCCCCC-cchhhhCCcccceEecccCccccc--cCCCcccCCccCCeEeCcCccccc
Q 047486          269 SFTSSANISIKYSLPSLKVLRFAYCNITE-FPGFLRNSEELYLLDLSNNRIQGR--ISKSDSPGWKSLIDLDLSNNFMTH  345 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~  345 (776)
                      ....                      +.. ....+.....+...++..+.....  .....+.....++.+.+.++.+..
T Consensus       263 ~~~~----------------------l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (635)
T 4g8a_A          263 NEGN----------------------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER  320 (635)
T ss_dssp             TSCC----------------------CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE
T ss_pred             cccc----------------------cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc
Confidence            1000                      000 011122223333333322221100  011112344555566665555554


Q ss_pred             ccc-ccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc--cCCchhhhcCC
Q 047486          346 IEL-HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG--TIPPCLGNFST  422 (776)
Q Consensus       346 ~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~  422 (776)
                      +.. ....+++.|++.+|.+.+..+..+..++.+++..|.+...  .....+++|+.+++++|.+..  ..+....... 
T Consensus       321 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-  397 (635)
T 4g8a_A          321 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-  397 (635)
T ss_dssp             CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS-
T ss_pred             ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhh-
Confidence            433 2334566677777766665555667777777777776543  234567889999999988752  3455555554 


Q ss_pred             CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEc
Q 047486          423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL  501 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  501 (776)
                      +|+.+++..+.+... +..+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+..++.|++|++
T Consensus       398 ~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L  476 (635)
T 4g8a_A          398 SLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  476 (635)
T ss_dssp             CCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             hhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence            799999998887653 4567789999999999888776544 56888999999999999999999999999999999999


Q ss_pred             cCCcccccC-CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHH
Q 047486          502 RSNRFYGPL-CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQ  580 (776)
Q Consensus       502 ~~n~l~~~~-~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  580 (776)
                      ++|.+.+.+ |..+  ..                                                              
T Consensus       477 s~N~~~~~~~~~~~--~~--------------------------------------------------------------  492 (635)
T 4g8a_A          477 AGNSFQENFLPDIF--TE--------------------------------------------------------------  492 (635)
T ss_dssp             TTCEEGGGEECSCC--TT--------------------------------------------------------------
T ss_pred             hhcccccccCchhh--hh--------------------------------------------------------------
Confidence            988754432 2211  22                                                              


Q ss_pred             HhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccc-cccc
Q 047486          581 KILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALA  659 (776)
Q Consensus       581 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~  659 (776)
                        ++.|+.|||++|++++..|..|+++++|++|+|++|+|++..|..|+++++|++|||++|++++..|+.+..+ ++|+
T Consensus       493 --l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          493 --LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             --CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             --ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence              3345566666666666666777777777777777777777777777777778888888887777777777776 5677


Q ss_pred             cccCccCccee
Q 047486          660 LLNLSYNRLWG  670 (776)
Q Consensus       660 ~L~ls~N~l~g  670 (776)
                      +|++++|++.+
T Consensus       571 ~L~L~~Np~~C  581 (635)
T 4g8a_A          571 FLNLTQNDFAC  581 (635)
T ss_dssp             EEECTTCCBCC
T ss_pred             EEEeeCCCCcc
Confidence            77777777754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=406.56  Aligned_cols=455  Identities=18%  Similarity=0.143  Sum_probs=281.2

Q ss_pred             cEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 047486          114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN  193 (776)
Q Consensus       114 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  193 (776)
                      ++||+++|+++ .+|..+.  ++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            35666666666 4555444  56666666666666655566666666666666666666655666666666666666666


Q ss_pred             cCCCcCCCCCCCCCCcEEEccCCcCCC-CCCccccCCCCCCEEECCCCcCccccCccccCCCCCC--CEEeccCCCC--C
Q 047486          194 MLNGPIDLFQLPNSLQDVRLEENEIRG-TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL--QFLDLSNNSL--L  268 (776)
Q Consensus       194 ~l~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L--~~L~Ls~n~i--~  268 (776)
                      .++.....  .+++|++|++++|.+++ .+|..++.+++|++|++++|.+.+    ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccccccc
Confidence            66643222  33677777777777765 467788888888888888887763    345566666  7777777775  1


Q ss_pred             ccccccccccccCCC-CccEEeccCCCCC-Ccc-hhhhCCcccceEecccCc-------cccccCCCcccCCccCCeEeC
Q 047486          269 SFTSSANISIKYSLP-SLKVLRFAYCNIT-EFP-GFLRNSEELYLLDLSNNR-------IQGRISKSDSPGWKSLIDLDL  338 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp-~~l~~~~~L~~L~L~~n~-------l~~~~~~~~~~~l~~L~~L~l  338 (776)
                      .....    .+..+. ....+++++|.+. .++ ..+..+++|+.+++++|.       +.+.++  .+..+++|+.|++
T Consensus       154 ~~~~~----~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l  227 (520)
T 2z7x_B          154 KEDPE----GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTL  227 (520)
T ss_dssp             SCCTT----TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEE
T ss_pred             ccccc----cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccc
Confidence            11110    011111 1223444444432 222 234455666666666654       443333  1244555555555


Q ss_pred             cCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccc-----cCCCCCCEEEccCCcCcccC
Q 047486          339 SNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-----CSLSSLQYLSLSDNNLSGTI  413 (776)
Q Consensus       339 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~  413 (776)
                      ++|.+++........               ....++|++|++++|.+.+.+|..+     ..++.|+.+++++|.+  .+
T Consensus       228 ~~~~l~~~~~~~~~~---------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~  290 (520)
T 2z7x_B          228 NNIETTWNSFIRILQ---------------LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF  290 (520)
T ss_dssp             EEEEEEHHHHHHHHH---------------HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS
T ss_pred             cccccCHHHHHHHHH---------------HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec
Confidence            554443322110000               0012467777777777777778777     8889999999999988  56


Q ss_pred             C-chhhhc--CCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCc--ccch
Q 047486          414 P-PCLGNF--STELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD--SFPC  488 (776)
Q Consensus       414 p-~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~  488 (776)
                      | ..+...  ..+|+.|++++|.+.+..  .+..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|.
T Consensus       291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH
T ss_pred             chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchH
Confidence            6 444443  126999999999886543  22678899999999999998888889999999999999999987  5567


Q ss_pred             hhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceE
Q 047486          489 WLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESI  568 (776)
Q Consensus       489 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~  568 (776)
                      .+..+++|++|++++|++.+.+|... +..+++|+.|++++|.++                                   
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~L~~L~Ls~N~l~-----------------------------------  412 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKSLLSLNMSSNILT-----------------------------------  412 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTTCCEEECCSSCCC-----------------------------------
T ss_pred             HHhhCCCCCEEECCCCcCCcccccch-hccCccCCEEECcCCCCC-----------------------------------
Confidence            78888888888888887776444321 133445555555555554                                   


Q ss_pred             EEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCC
Q 047486          569 TVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRI  648 (776)
Q Consensus       569 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  648 (776)
                                                   +.+|..+.  ++|+.|++++|+++ .+|..+..+++|++|+|++|+++. +
T Consensus       413 -----------------------------~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l  459 (520)
T 2z7x_B          413 -----------------------------DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V  459 (520)
T ss_dssp             -----------------------------GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred             -----------------------------cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-c
Confidence                                         44443332  45666666666665 455555566666666666666653 3


Q ss_pred             ch-hhccccccccccCccCcceec
Q 047486          649 PE-QLLSVTALALLNLSYNRLWGR  671 (776)
Q Consensus       649 p~-~l~~l~~L~~L~ls~N~l~g~  671 (776)
                      |. .+..+++|++|++++|++++.
T Consensus       460 ~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          460 PDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CHHHhccCCcccEEECcCCCCccc
Confidence            33 355566666666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.3e-44  Score=401.13  Aligned_cols=454  Identities=19%  Similarity=0.177  Sum_probs=303.0

Q ss_pred             EEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEE
Q 047486           61 DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEI  140 (776)
Q Consensus        61 ~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  140 (776)
                      +|++++|.++ .+|..+.  ++|++|++++| .+.+..|..     +..+++|++|++++|++++..|..|+++++|++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSD-----ILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHH-----HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhh-----ccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            3444444444 3443333  44444444444 443332222     3333334555555555544444455555555555


Q ss_pred             EccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCC--cEEEccCCc
Q 047486          141 AFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSL--QDVRLEENE  217 (776)
Q Consensus       141 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L--~~L~L~~n~  217 (776)
                      ++++|.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+  ..+..+++|  ++|++++|.
T Consensus        75 ~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           75 DLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             ECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred             ecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence            55555554 23333  44555555555555543 234455555555555555555443  112222444  555555555


Q ss_pred             C--CCCCCccccCCC-CCCEEECCCCcCccccCccccCCCCCCCEEeccCCC----CCccccccccccccCCCCccEEec
Q 047486          218 I--RGTIPNSTFQLV-NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS----LLSFTSSANISIKYSLPSLKVLRF  290 (776)
Q Consensus       218 i--~~~~~~~~~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~~~~~l~~L~~L~l  290 (776)
                      +  .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.    ...+.+..  +.+..+++|+.|++
T Consensus       150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~l~~L~~L~l  227 (520)
T 2z7x_B          150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL--AKLQTNPKLSNLTL  227 (520)
T ss_dssp             TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH--HGGGGCTTCCEEEE
T ss_pred             ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch--hhhccccchhhccc
Confidence            5  445555555444 233556677776666666667777777777777764    22222222  23446777777877


Q ss_pred             cCCCCCC-----cchhhhCCcccceEecccCccccccCCCcc----cCCccCCeEeCcCcccccccccc---c---cccC
Q 047486          291 AYCNITE-----FPGFLRNSEELYLLDLSNNRIQGRISKSDS----PGWKSLIDLDLSNNFMTHIELHP---W---MNIT  355 (776)
Q Consensus       291 ~~n~l~~-----lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~---~---~~L~  355 (776)
                      ++|.++.     ++..+ ..++|+.|++++|.+.|.+|...+    ..++.|+.+++++|.+ .++...   +   .+++
T Consensus       228 ~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~  305 (520)
T 2z7x_B          228 NNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIK  305 (520)
T ss_dssp             EEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCS
T ss_pred             cccccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCcee
Confidence            7776642     22222 246899999999999888887764    6788899999999888 444211   1   4689


Q ss_pred             EEeccCcccCCCCC-CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc--cCCchhhhcCCCccEEECCCC
Q 047486          356 TLDLRNNRIQGSIL-VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG--TIPPCLGNFSTELITLHLKNN  432 (776)
Q Consensus       356 ~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n  432 (776)
                      .|++++|.+.+... ..+++|++|++++|.+.+..|..+..+++|++|++++|++++  .+|..+..+. +|++|++++|
T Consensus       306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N  384 (520)
T 2z7x_B          306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQN  384 (520)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSS
T ss_pred             EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCC
Confidence            99999999877653 678999999999999999899999999999999999999985  4556677765 8999999999


Q ss_pred             cCCccCc-ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCC
Q 047486          433 SLEGHIH-DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLC  511 (776)
Q Consensus       433 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  511 (776)
                      .+++.+| ..+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|
T Consensus       385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~  460 (520)
T 2z7x_B          385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP  460 (520)
T ss_dssp             CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CC
T ss_pred             cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cC
Confidence            9998444 4688999999999999999988776654  79999999999998 677777799999999999999985 44


Q ss_pred             CCCCCcCCCCccEEeCCCCcCCCCCCc
Q 047486          512 NSNITFPFQALRIIDLSHNEFTGFLPR  538 (776)
Q Consensus       512 ~~~~~~~l~~L~~LdLs~n~l~~~~p~  538 (776)
                      .. .+..+++|+.|++++|++++..+.
T Consensus       461 ~~-~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          461 DG-IFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TT-TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HH-HhccCCcccEEECcCCCCcccCCc
Confidence            43 346789999999999999876553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-42  Score=399.12  Aligned_cols=551  Identities=18%  Similarity=0.173  Sum_probs=393.7

Q ss_pred             CCCCCCCCC---CCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccC
Q 047486           73 FPDDIFRLP---NLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG  149 (776)
Q Consensus        73 ~~~~l~~l~---~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  149 (776)
                      +|.....|.   .-++.+.++- +++ .+|..+. ..      +++|||++|+|++..+.+|.++++|++|+|++|.+++
T Consensus        20 ~p~~~~~c~~~~~~~~~~c~~~-~l~-~vP~~lp-~~------~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~   90 (635)
T 4g8a_A           20 IPESWEPCVEVVPNITYQCMEL-NFY-KIPDNLP-FS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT   90 (635)
T ss_dssp             -----CCSEEEETTTEEECTTS-CCS-SCCSSSC-TT------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCCCCccccCCCCEEECCCC-CcC-ccCCCCC-cC------CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC
Confidence            454444442   2345666665 555 4665432 23      8999999999998878899999999999999999998


Q ss_pred             CCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC-CCCCCCCCcEEEccCCcCCC-CCCcccc
Q 047486          150 QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID-LFQLPNSLQDVRLEENEIRG-TIPNSTF  227 (776)
Q Consensus       150 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~n~i~~-~~~~~~~  227 (776)
                      ..|++|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+ .+..+++|++|++++|.+++ ..|..+.
T Consensus        91 i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  170 (635)
T 4g8a_A           91 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS  170 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc
Confidence            888899999999999999999997777889999999999999999988655 35666899999999999875 3577888


Q ss_pred             CCCCCCEEECCCCcCccccCccccCCCCCC----CEEeccCCCCCccccccccccccCCCCccEEeccCCCCC--Ccchh
Q 047486          228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKL----QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT--EFPGF  301 (776)
Q Consensus       228 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L----~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~  301 (776)
                      .+++|++|++++|+++ .++...+..++++    ..++++.|.+..++...     .....++.+++.+|...  ..+..
T Consensus       171 ~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-----~~~~~~~~l~l~~n~~~~~~~~~~  244 (635)
T 4g8a_A          171 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLHKLTLRNNFDSLNVMKTC  244 (635)
T ss_dssp             GCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-----TTTCEEEEEEEESCCSSHHHHHHH
T ss_pred             cchhhhhhcccCcccc-ccccccccchhhhhhhhhhhhcccCcccccCccc-----ccchhhhhhhhhcccccccccchh
Confidence            8999999999999998 4444555554443    46788888876655432     23345667777776543  22345


Q ss_pred             hhCCcccceEecccCccccc--c---CCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCc
Q 047486          302 LRNSEELYLLDLSNNRIQGR--I---SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTK  376 (776)
Q Consensus       302 l~~~~~L~~L~L~~n~l~~~--~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~  376 (776)
                      +..+..++...+..+.....  +   ....+.....+....+..+.......              . ....+.....++
T Consensus       245 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~-~~~~~~~~~~l~  309 (635)
T 4g8a_A          245 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD--------------G-IIDLFNCLTNVS  309 (635)
T ss_dssp             HHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE--------------E-CTTTTGGGTTCS
T ss_pred             hcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--------------c-hhhhhhhhcccc
Confidence            56666666555543332211  0   01111122222222222111110000              0 001122345667


Q ss_pred             EEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCC
Q 047486          377 VLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN  456 (776)
Q Consensus       377 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  456 (776)
                      .+.+.++.+....  .+.....++.|++++|.+.+ ++..  .. ..|+.+++.+|.+....  .+..+++|+.|++++|
T Consensus       310 ~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~--~l-~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n  381 (635)
T 4g8a_A          310 SFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQ-FPTL--KL-KSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRN  381 (635)
T ss_dssp             EEEEESCEEEECG--GGGSCCCCSEEEEESCEESS-CCCC--BC-TTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSS
T ss_pred             ccccccccccccc--ccccchhhhhhhcccccccC-cCcc--cc-hhhhhcccccccCCCCc--ccccccccccchhhcc
Confidence            7777777765432  35566788999999988873 3322  22 36888888888776443  3456889999999999


Q ss_pred             cCcC--CCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCC
Q 047486          457 KLEG--PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG  534 (776)
Q Consensus       457 ~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~  534 (776)
                      .+..  ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++..|......+.. .+..+++++.+++++|.+.+
T Consensus       382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~l~~  459 (635)
T 4g8a_A          382 GLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRV  459 (635)
T ss_dssp             CCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSCCEE
T ss_pred             ccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccc-cccccccccccccccccccc
Confidence            8863  456677788999999999988765 4456788999999999988877655433 34678899999999999986


Q ss_pred             CCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc-ccchhhhccCCCCCEE
Q 047486          535 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH-GEIPEVLGNFKSLKVL  613 (776)
Q Consensus       535 ~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L  613 (776)
                      ..|.. +..                                       ++.++.|++++|.+. +..|..|..+++|++|
T Consensus       460 ~~~~~-~~~---------------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L  499 (635)
T 4g8a_A          460 AFNGI-FNG---------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  499 (635)
T ss_dssp             CCTTT-TTT---------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             ccccc-ccc---------------------------------------chhhhhhhhhhcccccccCchhhhhccccCEE
Confidence            55432 221                                       567899999999854 4678889999999999


Q ss_pred             eCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCC
Q 047486          614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC  693 (776)
Q Consensus       614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~  693 (776)
                      +|++|++++.+|.+|+++++|++|+|++|+|++..|..|..+++|++||+++|+|++..|...+  .+.  .......+.
T Consensus       500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l~--~~L~~L~L~  575 (635)
T 4g8a_A          500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HFP--SSLAFLNLT  575 (635)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CCC--TTCCEEECT
T ss_pred             ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hhh--CcCCEEEee
Confidence            9999999999999999999999999999999999999999999999999999999988775422  221  223445788


Q ss_pred             CCCCCCCCCCCCCC
Q 047486          694 GEPLTVRCSNDGLP  707 (776)
Q Consensus       694 g~pl~~~C~~~~~~  707 (776)
                      +|||.|+|...|..
T Consensus       576 ~Np~~C~C~~~~~~  589 (635)
T 4g8a_A          576 QNDFACTCEHQSFL  589 (635)
T ss_dssp             TCCBCCSGGGHHHH
T ss_pred             CCCCcccCCcHHHH
Confidence            99999999865543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.9e-43  Score=410.07  Aligned_cols=429  Identities=20%  Similarity=0.235  Sum_probs=258.5

Q ss_pred             CCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeC-CCccCCCCChhh--------------------------------
Q 047486            5 SKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHL-GATNMSLIKPFS--------------------------------   51 (776)
Q Consensus         5 ~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~--------------------------------   51 (776)
                      .+++.|+|+++.+.   +.+|+.++++++|++|+| ++|.+.|..|..                                
T Consensus       323 ~~V~~L~Ls~~~L~---G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~  399 (876)
T 4ecn_A          323 GRVTGLSLAGFGAK---GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN  399 (876)
T ss_dssp             SCEEEEECTTTCCE---EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred             CCEEEEECccCCCC---CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence            46788888888887   788888888888888888 777654442211                                


Q ss_pred             --------Hh-----------hccCCccEEEcC--CCCCCccCCCCCCCCCCCCEEeccCCCCccc--------------
Q 047486           52 --------LL-----------NLSSTMTDLDLG--GTRIKGNFPDDIFRLPNLQILFLNLNSQLTG--------------   96 (776)
Q Consensus        52 --------~~-----------~l~~~L~~L~Ls--~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~--------------   96 (776)
                              +.           .. ..++.+.+.  .|.+++ +|..++++++|++|+|++| .+++              
T Consensus       400 ~s~l~~~~l~~~~~~~~i~~~~~-l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~  476 (876)
T 4ecn_A          400 LSDLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDY  476 (876)
T ss_dssp             SCHHHHHHHHTCTTSCCCCCCCC-CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHH
T ss_pred             hhHHHHHHhhhCccccccccccc-cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-cCCCCccccccccccccc
Confidence                    00           00 122222232  256665 7777777788888888877 7776              


Q ss_pred             ---cCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCc-ccC-CCchhhcCCC-------CCCEE
Q 047486           97 ---YLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTG-QLPHHVSGLS-------YLTTF  164 (776)
Q Consensus        97 ---~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L  164 (776)
                         .+|..+.   |.++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+++++       +|++|
T Consensus       477 ~~g~iP~~l~---f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          477 AKQYENEELS---WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             HHHHTTSCCC---GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             ccccCChhhh---hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence               2665532   2255567777777777777777777777777777777776 776 6676655544       77777


Q ss_pred             EccCCcCCCCCCc--cccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCC-CCEEECCCCc
Q 047486          165 DLSGNYFQGGVPS--WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVN-LTILDLSSNN  241 (776)
Q Consensus       165 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~  241 (776)
                      ++++|.++ .+|.  .++++++|++|++++|.+. .+|.+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.
T Consensus       554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred             EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence            77777777 6666  7777777777777777776 4445555577777777777777 66777777777 7777777777


Q ss_pred             CccccCccccCCCC--CCCEEeccCCCCCccccccc-cccccCCCCccEEeccCCCCCCcchhh-hCCcccceEecccCc
Q 047486          242 LSGAIRFDQFSKLK--KLQFLDLSNNSLLSFTSSAN-ISIKYSLPSLKVLRFAYCNITEFPGFL-RNSEELYLLDLSNNR  317 (776)
Q Consensus       242 l~~~i~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~lp~~l-~~~~~L~~L~L~~n~  317 (776)
                      +. .+| ..+..++  +|+.|++++|.+........ ......+++|+.|++++|.++.+|..+ ..+++|+.|++++|.
T Consensus       631 L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          631 LK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            76 555 4444443  37777777777543221110 000113346666666666666666433 356666666666666


Q ss_pred             cccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCcccc--C
Q 047486          318 IQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC--S  395 (776)
Q Consensus       318 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~  395 (776)
                      ++ .+|...+.....                                   ....+++|+.|++++|++. .+|..+.  .
T Consensus       709 L~-~ip~~~~~~~~~-----------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          709 MT-SIPENSLKPKDG-----------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             CS-CCCTTSSSCTTS-----------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             CC-ccChHHhccccc-----------------------------------cccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            65 454443221110                                   0001224455555555555 4555555  6


Q ss_pred             CCCCCEEEccCCcCcccCCchhhhcCCCccEEECCC------CcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486          396 LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN------NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC  469 (776)
Q Consensus       396 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  469 (776)
                      +++|+.|+|++|++++ +|..+..+. +|+.|++++      |.+.+.+|..|..+++|+.|+|++|++ +.+|..+.  
T Consensus       752 l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--  826 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--  826 (876)
T ss_dssp             CTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred             CCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--
Confidence            7777777777777764 666666554 577777765      444444555555555555555555555 33443332  


Q ss_pred             CCCcEEEcCCCccCcccchh
Q 047486          470 IKLEVVNVGKNMISDSFPCW  489 (776)
Q Consensus       470 ~~L~~L~L~~n~l~~~~~~~  489 (776)
                      ++|+.|+|++|++....+..
T Consensus       827 ~~L~~LdLs~N~l~~i~~~~  846 (876)
T 4ecn_A          827 PQLYILDIADNPNISIDVTS  846 (876)
T ss_dssp             SSSCEEECCSCTTCEEECGG
T ss_pred             CCCCEEECCCCCCCccChHH
Confidence            34555555555544433333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-41  Score=383.57  Aligned_cols=455  Identities=22%  Similarity=0.197  Sum_probs=300.9

Q ss_pred             CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486           35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS  114 (776)
Q Consensus        35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~  114 (776)
                      ++++++++.+++. |..+   +++|++|++++|.+++..|.++.++++|++|++++|                       
T Consensus        34 ~~l~ls~~~L~~i-p~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-----------------------   86 (562)
T 3a79_B           34 SMVDYSNRNLTHV-PKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-----------------------   86 (562)
T ss_dssp             CEEECTTSCCCSC-CTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-----------------------
T ss_pred             cEEEcCCCCCccC-CCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-----------------------
Confidence            4555555555542 3222   145555555555555444445555555555555555                       


Q ss_pred             EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCC
Q 047486          115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG-GVPSWLFTLPSLLSIDLSKN  193 (776)
Q Consensus       115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n  193 (776)
                             .+++..|..|+++++|++|++++|.++ .+|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|
T Consensus        87 -------~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B           87 -------RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             -------CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             -------CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC
Confidence                   444444444444444444444444444 23332  44445555555554443 12344455555555555555


Q ss_pred             cCCCcCCCCCCCCCC--cEEEccCCcC--CCCCCccccCCC--CCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486          194 MLNGPIDLFQLPNSL--QDVRLEENEI--RGTIPNSTFQLV--NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL  267 (776)
Q Consensus       194 ~l~~~~~~~~~~~~L--~~L~L~~n~i--~~~~~~~~~~l~--~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i  267 (776)
                      .+.+.  .+..+++|  ++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.+++++|..
T Consensus       157 ~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          157 KFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             BCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred             ccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccc
Confidence            44431  11111333  5666666655  555666665543  23 5577777777767767777888888888888752


Q ss_pred             C--ccccccccccccCCCCccEEeccCCCCC-----CcchhhhCCcccceEecccCccccccCCCcc----cCCccCCeE
Q 047486          268 L--SFTSSANISIKYSLPSLKVLRFAYCNIT-----EFPGFLRNSEELYLLDLSNNRIQGRISKSDS----PGWKSLIDL  336 (776)
Q Consensus       268 ~--~~~~~~~~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L  336 (776)
                      .  .+++..  ..+..+++|+.+++.++.+.     .++..+ ..++|++|++++|.++|.+|...+    ..++.|+.+
T Consensus       234 ~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~  310 (562)
T 3a79_B          234 NCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE  310 (562)
T ss_dssp             THHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEE
T ss_pred             ccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehh
Confidence            1  122111  23346778888888777654     233333 345899999999999988888764    445555555


Q ss_pred             eCcCccccccccc------cccccCEEeccCcccCCCCC-CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcC
Q 047486          337 DLSNNFMTHIELH------PWMNITTLDLRNNRIQGSIL-VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL  409 (776)
Q Consensus       337 ~l~~n~l~~~~~~------~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  409 (776)
                      ++..+.+ .++..      ...++++|++++|.+..... ..+++|++|++++|.+.+..|..+..+++|++|++++|++
T Consensus       311 ~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  389 (562)
T 3a79_B          311 HVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL  389 (562)
T ss_dssp             EEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred             hccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence            5555555 22211      12469999999999876554 6789999999999999999999999999999999999999


Q ss_pred             cc--cCCchhhhcCCCccEEECCCCcCCc-cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCccc
Q 047486          410 SG--TIPPCLGNFSTELITLHLKNNSLEG-HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSF  486 (776)
Q Consensus       410 ~~--~~p~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  486 (776)
                      ++  .+|..+..+. +|++|++++|.+++ ..+..+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+
T Consensus       390 ~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i  465 (562)
T 3a79_B          390 KNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI  465 (562)
T ss_dssp             CBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred             CCcccchhhhcCCC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence            84  2234556665 89999999999998 5555689999999999999999887766554  79999999999998 56


Q ss_pred             chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcc
Q 047486          487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRR  539 (776)
Q Consensus       487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~  539 (776)
                      |..+..+++|++|++++|++++ +|.. .+..+++|+.|++++|++.+..|..
T Consensus       466 p~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          466 PKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             CTTTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             ChhhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchH
Confidence            6666699999999999999995 4444 3467899999999999999766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-41  Score=383.47  Aligned_cols=457  Identities=18%  Similarity=0.170  Sum_probs=249.2

Q ss_pred             cEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 047486          114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN  193 (776)
Q Consensus       114 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  193 (776)
                      +++|++++++++ +|..+.  ++|++|++++|.+++..|.+|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            445555555552 443332  45555555555555444455555555555555555555554555555555555555555


Q ss_pred             cCCCcCCCCCCCCCCcEEEccCCcCCC-CCCccccCCCCCCEEECCCCcCccccCccccCCCCCC--CEEeccCCCC--C
Q 047486          194 MLNGPIDLFQLPNSLQDVRLEENEIRG-TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL--QFLDLSNNSL--L  268 (776)
Q Consensus       194 ~l~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L--~~L~Ls~n~i--~  268 (776)
                      .++.....  .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+ .   .+..+++|  ++|++++|.+  .
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeeccccccc
Confidence            55432222  23556666666666654 235667777777777777777653 2   23334444  7777777664  2


Q ss_pred             ccccccccccccCCC-CccEEeccCCCCCC-cc-hhhhCCcccceEecccCcc-----ccccCCCcccCCccCCeEeCcC
Q 047486          269 SFTSSANISIKYSLP-SLKVLRFAYCNITE-FP-GFLRNSEELYLLDLSNNRI-----QGRISKSDSPGWKSLIDLDLSN  340 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~-lp-~~l~~~~~L~~L~L~~n~l-----~~~~~~~~~~~l~~L~~L~l~~  340 (776)
                      ......    +..+. ..-.+++++|.+.. ++ ..+..+++|+.+++++|..     .+.++  .+..++.++.+++.+
T Consensus       185 ~~~~~~----l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          185 GGETES----LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSSCCE----EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEEEE
T ss_pred             ccCccc----ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEecC
Confidence            211110    01110 01133444444331 22 2344555666666665531     11111  113344444444444


Q ss_pred             ccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccc-----cCCCCCCEEEccCCcCcccCCc
Q 047486          341 NFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSI-----CSLSSLQYLSLSDNNLSGTIPP  415 (776)
Q Consensus       341 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~p~  415 (776)
                      +.+++.......               .....++|++|++++|.+.+.+|..+     ..++.|+.++++.+.+  .+|.
T Consensus       259 ~~l~~~~~~~~~---------------~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~  321 (562)
T 3a79_B          259 IETTWKCSVKLF---------------QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSK  321 (562)
T ss_dssp             EEECHHHHHHHH---------------HHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCH
T ss_pred             CcCcHHHHHHHH---------------HhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecCh
Confidence            433321110000               00012356677777777776677665     5566666666666666  4552


Q ss_pred             -hhhhc--CCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcc--cchhh
Q 047486          416 -CLGNF--STELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDS--FPCWL  490 (776)
Q Consensus       416 -~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~  490 (776)
                       .+...  ..+|++|++++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++.  .|..+
T Consensus       322 ~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  399 (562)
T 3a79_B          322 EALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT  399 (562)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT
T ss_pred             hhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh
Confidence             22222  125888888888775332  125677788888888888777777777777888888887777763  34556


Q ss_pred             cCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEE
Q 047486          491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV  570 (776)
Q Consensus       491 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~  570 (776)
                      ..+++|++|++++|++.+.+|... +..++                                                  
T Consensus       400 ~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~--------------------------------------------------  428 (562)
T 3a79_B          400 KNMSSLETLDVSLNSLNSHAYDRT-CAWAE--------------------------------------------------  428 (562)
T ss_dssp             TTCTTCCEEECTTSCCBSCCSSCC-CCCCT--------------------------------------------------
T ss_pred             cCCCCCCEEECCCCcCCCccChhh-hcCcc--------------------------------------------------
Confidence            666666666666666655333321 12233                                                  


Q ss_pred             EeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch
Q 047486          571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  650 (776)
Q Consensus       571 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  650 (776)
                                    .|+.|++++|++++.+|..+.  ++|+.|+|++|+++ .+|..+.++++|++|||++|++++ +|.
T Consensus       429 --------------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~  490 (562)
T 3a79_B          429 --------------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPD  490 (562)
T ss_dssp             --------------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCT
T ss_pred             --------------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCH
Confidence                          445555555555555444433  56777777777776 566655677777777777777773 444


Q ss_pred             h-hccccccccccCccCcceecCC
Q 047486          651 Q-LLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       651 ~-l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                      . +..+++|+.|++++|++.+..|
T Consensus       491 ~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          491 GVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCcCCCcc
Confidence            3 6777777777777777766544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-38  Score=348.90  Aligned_cols=408  Identities=24%  Similarity=0.256  Sum_probs=176.0

Q ss_pred             CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCC-------------CEEeccCCCCcccc
Q 047486           31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL-------------QILFLNLNSQLTGY   97 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L-------------~~L~Ls~n~~~~~~   97 (776)
                      .++|++|++++|.+ +.+|..++++ ++|++|++++|.+.|.+|..++++++|             ++|++++| .+++ 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~-   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSS-   85 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSC-
T ss_pred             cccchhhhcccCch-hhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-cccc-
Confidence            35555556655555 4455555555 556666666555555555555555543             55666655 4443 


Q ss_pred             CCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCc
Q 047486           98 LPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS  177 (776)
Q Consensus        98 ~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  177 (776)
                      +|...        ++|++|++++|.+++ +|..   +++|++|++++|.+++ +|..   .++|++|++++|.+++ +| 
T Consensus        86 lp~~~--------~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-  147 (454)
T 1jl5_A           86 LPELP--------PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-  147 (454)
T ss_dssp             CCSCC--------TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-
T ss_pred             CCCCc--------CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-
Confidence            22210        125666666666654 4432   2556666666665553 2211   1456666666666653 44 


Q ss_pred             cccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCC
Q 047486          178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKL  257 (776)
Q Consensus       178 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L  257 (776)
                      .++++++|++|++++|.+++....   ..+|++|++++|.+++ +| .+..+++|++|++++|.+.+ ++.    ..++|
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L  217 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSL  217 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTC
T ss_pred             ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcc
Confidence            356666666666666665542221   1456666666666654 33 45566666666666666552 331    11356


Q ss_pred             CEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEe
Q 047486          258 QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLD  337 (776)
Q Consensus       258 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  337 (776)
                      ++|++++|.++.++.      +..+++|++|++++|.++.+|..   .++|+.|++++|.+++ +|..    .++|++|+
T Consensus       218 ~~L~l~~n~l~~lp~------~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~L~  283 (454)
T 1jl5_A          218 ESIVAGNNILEELPE------LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTFLD  283 (454)
T ss_dssp             CEEECCSSCCSSCCC------CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCEEE
T ss_pred             cEEECcCCcCCcccc------cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc----cCcCCEEE
Confidence            666666665543331      23455666666666665555542   2456666666666553 3322    24566666


Q ss_pred             CcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchh
Q 047486          338 LSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL  417 (776)
Q Consensus       338 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  417 (776)
                      +++|.+++++.. .++|+.|++++|++++ ++..+++|++|++++|++.+ +|..   +++|++|++++|+++ .+|.  
T Consensus       284 ls~N~l~~l~~~-~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--  354 (454)
T 1jl5_A          284 VSENIFSGLSEL-PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--  354 (454)
T ss_dssp             CCSSCCSEESCC-CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred             CcCCccCcccCc-CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--
Confidence            666665554321 2455566666665554 12223456666666666654 3332   356666666666665 4554  


Q ss_pred             hhcCCCccEEECCCCcCCc--cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCc--ccchhhcCC
Q 047486          418 GNFSTELITLHLKNNSLEG--HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD--SFPCWLGSL  493 (776)
Q Consensus       418 ~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l  493 (776)
                        ..++|++|++++|.+++  .+|..+..      |  +.|.+.+.+|..   +++|+.|++++|++++  .+|.     
T Consensus       355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-----  416 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-----  416 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC--------------------------------------
T ss_pred             --hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---cCcCCEEECCCCcCCccccchh-----
Confidence              12356666666666665  33433321      1  234444444432   3678888888888876  4443     


Q ss_pred             CCcCEEEccCCcccccCCC
Q 047486          494 HELKILVLRSNRFYGPLCN  512 (776)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~  512 (776)
                       +++.|.+.+|.+.+..+.
T Consensus       417 -sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          417 -SVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             -------------------
T ss_pred             -hHhheeCcCcccCCcccc
Confidence             355566777777665443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.6e-38  Score=343.86  Aligned_cols=416  Identities=19%  Similarity=0.238  Sum_probs=182.8

Q ss_pred             hhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCC-CCcc-------cCCCCcEEEccC
Q 047486           49 PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWS-SPLR-------ELDLLSVLDIGF  120 (776)
Q Consensus        49 ~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~-~~l~-------~L~~L~~L~Ls~  120 (776)
                      |+.+. . ++|++|++++|.+ +.+|++++++++|++|++++| .+.|.+|..++. ..+.       ....+++|++++
T Consensus         5 p~~~~-~-~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~   80 (454)
T 1jl5_A            5 PRNVS-N-TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN   80 (454)
T ss_dssp             --------------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred             ccccc-c-ccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence            44443 4 7899999999999 799999999999999999999 899999988554 2100       001247777777


Q ss_pred             CcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCC
Q 047486          121 CNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID  200 (776)
Q Consensus       121 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  200 (776)
                      |.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+++. +
T Consensus        81 ~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p  147 (454)
T 1jl5_A           81 LGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-P  147 (454)
T ss_dssp             SCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-C
T ss_pred             Ccccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-c
Confidence            77764 3331   2567777777777765 4532   3567777777776663 2221   15667777777766653 3


Q ss_pred             CCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccccccccccc
Q 047486          201 LFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY  280 (776)
Q Consensus       201 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~  280 (776)
                      .+..+++|++|++++|.+++ +|..+   ++|++|++++|.+.+ ++  .+..+++|++|++++|.++.++..       
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~~-------  213 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPDL-------  213 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCCC-------
T ss_pred             ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCCC-------
Confidence            44444666666666666663 44332   366666666666663 33  366666666666666665543321       


Q ss_pred             CCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEecc
Q 047486          281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLR  360 (776)
Q Consensus       281 ~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  360 (776)
                       .++|++|++++|.++.+|. +..+++|+.|++++|++++ +|..    .++|++|++++|.+++++. .+++|+.|+++
T Consensus       214 -~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls  285 (454)
T 1jl5_A          214 -PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTDLPE-LPQSLTFLDVS  285 (454)
T ss_dssp             -CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSCCCC-CCTTCCEEECC
T ss_pred             -cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccccCc-ccCcCCEEECc
Confidence             2466666666666666653 5566666666666666652 3321    2455666666665555432 23455555555


Q ss_pred             CcccCCCCCCCCCCCcEEEccCCcCccCCCccccCC-CCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCc
Q 047486          361 NNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSL-SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH  439 (776)
Q Consensus       361 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~  439 (776)
                      +|++++. +..+++|+.|++++|.+.+.     ..+ ++|++|++++|++++ +|..+    ++|++|++++|.++++ |
T Consensus       286 ~N~l~~l-~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~~----~~L~~L~L~~N~l~~l-p  353 (454)
T 1jl5_A          286 ENIFSGL-SELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPALP----PRLERLIASFNHLAEV-P  353 (454)
T ss_dssp             SSCCSEE-SCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSCC-C
T ss_pred             CCccCcc-cCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-ccccC----CcCCEEECCCCccccc-c
Confidence            5555441 11124455555555544431     111 244555555554442 33321    2444555554444432 2


Q ss_pred             ccccCCCCccEEEcCCCcCcC--CCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccc--cCCCCCC
Q 047486          440 DTFANASHLRSLDLNSNKLEG--PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG--PLCNSNI  515 (776)
Q Consensus       440 ~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~  515 (776)
                      .   .+++|++|++++|++++  .+|.++..      |  +.|.+.+.+|..   +++|++|++++|++.+  .+|    
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP----  415 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP----  415 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC------------------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---cCcCCEEECCCCcCCccccch----
Confidence            2   23444444444444444  23332221      1  123333333321   2556666666666654  222    


Q ss_pred             CcCCCCccEEeCCCCcCCCCCC
Q 047486          516 TFPFQALRIIDLSHNEFTGFLP  537 (776)
Q Consensus       516 ~~~l~~L~~LdLs~n~l~~~~p  537 (776)
                          ++++.|++.+|.+.+.+|
T Consensus       416 ----~sl~~L~~~~~~~~~~~~  433 (454)
T 1jl5_A          416 ----ESVEDLRMNSERVVDPYE  433 (454)
T ss_dssp             ----------------------
T ss_pred             ----hhHhheeCcCcccCCccc
Confidence                224555555555554433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.5e-37  Score=341.41  Aligned_cols=370  Identities=22%  Similarity=0.210  Sum_probs=217.9

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCc
Q 047486          206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL  285 (776)
Q Consensus       206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L  285 (776)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.++.+...    .+..+++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG----AFNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT----TTTTCTTC
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh----hccCcccC
Confidence            45555555555555555556666666666666666665555555566666666666666665433221    23345555


Q ss_pred             cEEeccCCCCCC-cch--hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCc
Q 047486          286 KVLRFAYCNITE-FPG--FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNN  362 (776)
Q Consensus       286 ~~L~l~~n~l~~-lp~--~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  362 (776)
                      ++|++++|.++. +|.  .+..+++|++|++++|.+.+..|...+..+++|++|++++|.+++..+..+..+.       
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------  178 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ-------  178 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT-------
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc-------
Confidence            555555555543 222  2556666666666666666544544445666666666666665555443332110       


Q ss_pred             ccCCCCCCCCCCCcEEEccCCcCccCCCcc--------ccCCCCCCEEEccCCcCcccCCchhhhcC--CCccEEECCCC
Q 047486          363 RIQGSILVPPPSTKVLLVSNNKLSGKIPPS--------ICSLSSLQYLSLSDNNLSGTIPPCLGNFS--TELITLHLKNN  432 (776)
Q Consensus       363 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n  432 (776)
                               ...++.+++++|.+.+..+..        +..+++|++|++++|.+.+..|..+....  .+|+.|++++|
T Consensus       179 ---------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          179 ---------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             ---------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred             ---------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence                     012344444444444332222        22445677777777776665655554431  25666666666


Q ss_pred             cCCccCcccccCCCCccEEEcCCCcCcCCCChhhhc--CCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccC
Q 047486          433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAK--CIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL  510 (776)
Q Consensus       433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  510 (776)
                      .+.+...              ..+.+.+..+..+..  .++|+.|++++|++++..|.++..+++|++|++++|++.+..
T Consensus       250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            5443211              111222222222222  245666666666666666666665555555555555554433


Q ss_pred             CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEe
Q 047486          511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD  590 (776)
Q Consensus       511 ~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  590 (776)
                      +..+  ..                                                                ++.|+.|+
T Consensus       316 ~~~~--~~----------------------------------------------------------------l~~L~~L~  329 (455)
T 3v47_A          316 DNAF--WG----------------------------------------------------------------LTHLLKLN  329 (455)
T ss_dssp             TTTT--TT----------------------------------------------------------------CTTCCEEE
T ss_pred             hhHh--cC----------------------------------------------------------------cccCCEEE
Confidence            2221  11                                                                34556666


Q ss_pred             cCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          591 FSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       591 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      +++|.+++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++++
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            77777766677778888889999999998888888888888899999999999887777778888889999999999888


Q ss_pred             cCCCC
Q 047486          671 RIPRG  675 (776)
Q Consensus       671 ~iP~~  675 (776)
                      .+|.-
T Consensus       410 ~~~~~  414 (455)
T 3v47_A          410 SCPRI  414 (455)
T ss_dssp             CTTTT
T ss_pred             CCCcc
Confidence            87753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.7e-38  Score=344.12  Aligned_cols=371  Identities=20%  Similarity=0.182  Sum_probs=242.4

Q ss_pred             CccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccC
Q 047486           70 KGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG  149 (776)
Q Consensus        70 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  149 (776)
                      .+..+..++++++|++|++++| .+.+ +| .     +..+++|++|++++|.+++. |  ++.+++|++|++++|.+++
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~-~-----l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNS-SITD-MT-G-----IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSS-CCCC-CT-T-----GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred             CcccccChhHcCCCCEEEccCC-Cccc-Ch-h-----hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce
Confidence            3334445666777777777777 6664 24 2     55566677777777777753 3  6777777777777777775


Q ss_pred             CCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCC
Q 047486          150 QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQL  229 (776)
Q Consensus       150 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l  229 (776)
                      . +  ++++++|++|++++|.+++ +|  ++.+++|++|++++|.+++. + +..+++|++|++++|...+.+  .+..+
T Consensus       100 ~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l  169 (457)
T 3bz5_A          100 L-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQ  169 (457)
T ss_dssp             C-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred             e-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccC
Confidence            3 3  6677777777777777764 33  66667777777776666653 2 222355555555555333333  24445


Q ss_pred             CCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccc
Q 047486          230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELY  309 (776)
Q Consensus       230 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~  309 (776)
                      ++|++|++++|++++ ++   +..+++|++|++++|.                            ++.++  +..+++|+
T Consensus       170 ~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~----------------------------l~~~~--l~~l~~L~  215 (457)
T 3bz5_A          170 TQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNN----------------------------ITKLD--LNQNIQLT  215 (457)
T ss_dssp             TTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSC----------------------------CSCCC--CTTCTTCS
T ss_pred             CcCCEEECCCCccce-ec---cccCCCCCEEECcCCc----------------------------CCeec--cccCCCCC
Confidence            555555555555542 22   4444455555555554                            44442  44555666


Q ss_pred             eEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCC
Q 047486          310 LLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKI  389 (776)
Q Consensus       310 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~  389 (776)
                      .|++++|++++ +|   +..+++|++|++++|.+++++...+++|+.|+++.|.           |+.+++++|.+.+.+
T Consensus       216 ~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~-----------L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          216 FLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-----------LLEIDLTHNTQLIYF  280 (457)
T ss_dssp             EEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC-----------CSCCCCTTCTTCCEE
T ss_pred             EEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC-----------CCEEECCCCccCCcc
Confidence            66666666654 33   2455666666666666666665566666666666553           456777788777666


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486          390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC  469 (776)
Q Consensus       390 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  469 (776)
                      |  +..+++|+.|++++|...+.+|..   . .+|+.|++++|             ++|++|++++|++++. +  +..+
T Consensus       281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l  338 (457)
T 3bz5_A          281 Q--AEGCRKIKELDVTHNTQLYLLDCQ---A-AGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHN  338 (457)
T ss_dssp             E--CTTCTTCCCCCCTTCTTCCEEECT---T-CCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTC
T ss_pred             c--ccccccCCEEECCCCcccceeccC---C-CcceEechhhc-------------ccCCEEECCCCccccc-c--cccC
Confidence            6  467889999999999887777742   2 25666655544             6899999999999985 3  8889


Q ss_pred             CCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486          470 IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM  547 (776)
Q Consensus       470 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l  547 (776)
                      ++|+.|++++|++++        ++.|..|.+++|.+.|.       ..+..|+.+++++|+++|.+|..++.....+
T Consensus       339 ~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~  401 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNP  401 (457)
T ss_dssp             TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred             CcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCce
Confidence            999999999999886        35677778889988875       2355688899999999999998876554444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.6e-37  Score=338.07  Aligned_cols=370  Identities=21%  Similarity=0.205  Sum_probs=178.5

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCC-chhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQL-PHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      |++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus        32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  111 (455)
T 3v47_A           32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT  111 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred             cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence            555555555555555555555666666666665554332 3455566666666666666655555556666666666666


Q ss_pred             CCcCCCcC-C--CCCCCCCCcEEEccCCcCCCCCCcc-ccCCCCCCEEECCCCcCccccCccccCCC--CCCCEEeccCC
Q 047486          192 KNMLNGPI-D--LFQLPNSLQDVRLEENEIRGTIPNS-TFQLVNLTILDLSSNNLSGAIRFDQFSKL--KKLQFLDLSNN  265 (776)
Q Consensus       192 ~n~l~~~~-~--~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~Ls~n  265 (776)
                      +|.+++.. +  .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+ ..+..+  .+|+.|++++|
T Consensus       112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccC
Confidence            66555411 1  1333355555566666655554544 5566666666666666653322 333333  45555555555


Q ss_pred             CCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCccc--CCccCCeEeCcCccc
Q 047486          266 SLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP--GWKSLIDLDLSNNFM  343 (776)
Q Consensus       266 ~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l  343 (776)
                      .+..++.......                   ....+..+++|+.|++++|.+.+..+..+..  ..++|+.|++++|..
T Consensus       191 ~l~~~~~~~~~~~-------------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          191 TLQDMNEYWLGWE-------------------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             BCTTCSTTCTTHH-------------------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             cccccchhhcccc-------------------ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            5443332210000                   0001123344555555555544433332211  113344444444432


Q ss_pred             cccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCcccc--CCCCCCEEEccCCcCcccCCchhhhcC
Q 047486          344 THIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC--SLSSLQYLSLSDNNLSGTIPPCLGNFS  421 (776)
Q Consensus       344 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~~  421 (776)
                      ......           .                     +.+....+..+.  ..++|++|++++|.+.+..|..+..+.
T Consensus       252 ~~~~~~-----------~---------------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  299 (455)
T 3v47_A          252 MGSSFG-----------H---------------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT  299 (455)
T ss_dssp             TSCCTT-----------C---------------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred             cccccc-----------h---------------------hhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence            221110           0                     000000111111  123444555555554444444443333


Q ss_pred             CCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEc
Q 047486          422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL  501 (776)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  501 (776)
                       +|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++..|.++..+++|++|++
T Consensus       300 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          300 -DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence             4555555555555544555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCC
Q 047486          502 RSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP  537 (776)
Q Consensus       502 ~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p  537 (776)
                      ++|++.+..+..  +..+++|+.|++++|++++..|
T Consensus       379 ~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          379 DTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCccccCCHhH--hccCCcccEEEccCCCcccCCC
Confidence            555555432222  2345566666666666666555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-35  Score=324.80  Aligned_cols=363  Identities=17%  Similarity=0.180  Sum_probs=278.4

Q ss_pred             CCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCC
Q 047486          218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITE  297 (776)
Q Consensus       218 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  297 (776)
                      ..+..+..+..+++|++|++++|.+.+ ++  .+..+++|++|++++|.++.++       +..+++|++|++++|.++.
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSC
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCce
Confidence            344555678889999999999999984 44  5889999999999999977653       4478999999999999988


Q ss_pred             cchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCC-CCCCCCCc
Q 047486          298 FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI-LVPPPSTK  376 (776)
Q Consensus       298 lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~  376 (776)
                      +|  +..+++|++|++++|++++ ++   +..+++|++|++++|.+++++...+++|++|++++|...+.+ ...+++|+
T Consensus       100 ~~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~  173 (457)
T 3bz5_A          100 LD--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLT  173 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred             ee--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCC
Confidence            86  7889999999999999885 44   478899999999999998887777788888888888544443 34577788


Q ss_pred             EEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCC
Q 047486          377 VLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSN  456 (776)
Q Consensus       377 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  456 (776)
                      .|++++|++++ +|  +..+++|++|++++|++++ ++  +..+. +|++|++++|+++++ |  +..+++|+.|++++|
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~-~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-LD--LNQNI-QLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCe-ec--cccCC-CCCEEECcCCccccc-C--ccccCCCCEEEeeCC
Confidence            88888888776 33  6777788888888887774 32  44444 688888888887763 3  677777888888888


Q ss_pred             cCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCC
Q 047486          457 KLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFL  536 (776)
Q Consensus       457 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~  536 (776)
                      ++++..   +..+++|+.|+++.|              +|+.|++++|++.+.+|.    ..+++|+.|++++|...+.+
T Consensus       244 ~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          244 PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEE
T ss_pred             cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCccccee
Confidence            877653   345666777776654              455677778877776653    45788899999999888777


Q ss_pred             CcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCC
Q 047486          537 PRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLS  616 (776)
Q Consensus       537 p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  616 (776)
                      |..    ...++.++..                            .++.|+.|++++|++++. +  ++.+++|+.|+++
T Consensus       303 ~~~----~~~L~~L~l~----------------------------~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~  347 (457)
T 3bz5_A          303 DCQ----AAGITELDLS----------------------------QNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV  347 (457)
T ss_dssp             ECT----TCCCSCCCCT----------------------------TCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred             ccC----CCcceEechh----------------------------hcccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence            642    2233333221                            146889999999999984 3  8999999999999


Q ss_pred             CCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCC
Q 047486          617 HNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG  675 (776)
Q Consensus       617 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  675 (776)
                      +|++++        ++.|+.|++++|.++|.     ..+..|..+++++|+++|.||..
T Consensus       348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            999986        24677778999999986     35677899999999999999975

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-35  Score=325.86  Aligned_cols=323  Identities=21%  Similarity=0.225  Sum_probs=246.0

Q ss_pred             EEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCC
Q 047486          287 VLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQG  366 (776)
Q Consensus       287 ~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  366 (776)
                      .++.+++.++.+|..+  .++++.|++++|.+++ ++...|..+++|++|++++|.++.+.+..+.              
T Consensus        15 ~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--------------   77 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFN--------------   77 (477)
T ss_dssp             EEECCSCCCSSCCSCC--CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTT--------------
T ss_pred             EEEeCCCCcCcCCCCC--CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhh--------------
Confidence            4444455555555432  2355666666666653 3223335555666665555555554333221              


Q ss_pred             CCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCC
Q 047486          367 SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANAS  446 (776)
Q Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  446 (776)
                          .+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|.+++
T Consensus        78 ----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~  152 (477)
T 2id5_A           78 ----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLN  152 (477)
T ss_dssp             ----TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCT
T ss_pred             ----CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCC
Confidence                234456666666666655556677888888888888888866666666665 788888888888888888888899


Q ss_pred             CccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEe
Q 047486          447 HLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIID  526 (776)
Q Consensus       447 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~Ld  526 (776)
                      +|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++.+.++...  ....+|+.|+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~  230 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLS  230 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEE
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEE
Confidence            99999999999988777788899999999999999988888888899999999999988877776654  3345899999


Q ss_pred             CCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhcc
Q 047486          527 LSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGN  606 (776)
Q Consensus       527 Ls~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~  606 (776)
                      +++|.++ .+|...+..                                       ++.|+.|+|++|.+++..+..|..
T Consensus       231 l~~n~l~-~~~~~~~~~---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          231 ITHCNLT-AVPYLAVRH---------------------------------------LVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             EESSCCC-SCCHHHHTT---------------------------------------CTTCCEEECCSSCCCEECTTSCTT
T ss_pred             CcCCccc-ccCHHHhcC---------------------------------------ccccCeeECCCCcCCccChhhccc
Confidence            9999988 455433322                                       567899999999999888888999


Q ss_pred             CCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486          607 FKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       607 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                      +++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            9999999999999999999999999999999999999998888888999999999999999986533

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.9e-34  Score=314.55  Aligned_cols=349  Identities=24%  Similarity=0.308  Sum_probs=265.4

Q ss_pred             CCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcc
Q 047486          228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEE  307 (776)
Q Consensus       228 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~  307 (776)
                      .+++++.|+++++.+. .++  .+..+++|++|++++|.++.++.      +..+++|++|++++|.++.++. +..+++
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~-~~~l~~  113 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITP-LANLTN  113 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh------hhccccCCEEECCCCccccChh-hcCCCC
Confidence            3568888888888887 454  37778888888888888766543      4467888888888888887776 778888


Q ss_pred             cceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCcc
Q 047486          308 LYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG  387 (776)
Q Consensus       308 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  387 (776)
                      |++|++++|.+++. +.  +..+++|++|++++|.++.++.                    ...+++|+.|+++ +.+.+
T Consensus       114 L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~--------------------~~~l~~L~~L~l~-~~~~~  169 (466)
T 1o6v_A          114 LTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISA--------------------LSGLTSLQQLSFG-NQVTD  169 (466)
T ss_dssp             CCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGG--------------------GTTCTTCSEEEEE-ESCCC
T ss_pred             CCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCChh--------------------hccCCcccEeecC-CcccC
Confidence            88888888887743 32  4677778777777777665432                    1223455555554 33332


Q ss_pred             CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhh
Q 047486          388 KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA  467 (776)
Q Consensus       388 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  467 (776)
                      .  ..+..+++|++|++++|.+. .++ .+..+. +|++|++++|.+++..+  +..+++|++|++++|++++.  ..+.
T Consensus       170 ~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~  240 (466)
T 1o6v_A          170 L--KPLANLTTLERLDISSNKVS-DIS-VLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA  240 (466)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCC-CCG-GGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             c--hhhccCCCCCEEECcCCcCC-CCh-hhccCC-CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence            2  23777888888888888876 343 355554 78888888888887655  66788888888888888764  4677


Q ss_pred             cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486          468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM  547 (776)
Q Consensus       468 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l  547 (776)
                      .+++|+.|++++|++++..+  +..+++|++|++++|++.+..+    ...+++|+.|++++|++++..|   +.     
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~~-----  306 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP---IS-----  306 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG---GG-----
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchh---hc-----
Confidence            88888888888888887655  7888888899998888877544    3567889999999998875322   11     


Q ss_pred             hhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcc
Q 047486          548 KNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS  627 (776)
Q Consensus       548 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  627 (776)
                                                        .++.|+.|++++|++++..|  ++.+++|+.|++++|++++.  ..
T Consensus       307 ----------------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          307 ----------------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             ----------------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             ----------------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence                                              15678999999999998766  78999999999999999875  47


Q ss_pred             ccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486          628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  674 (776)
Q Consensus       628 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  674 (776)
                      +.++++|+.|++++|++++..|  +..+++|+.|++++|++++ +|.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~  392 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV  392 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence            8899999999999999998877  8899999999999999987 354

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1e-33  Score=312.68  Aligned_cols=345  Identities=28%  Similarity=0.371  Sum_probs=277.1

Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCc
Q 047486          206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL  285 (776)
Q Consensus       206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L  285 (776)
                      ++++.|++.++.+.. +| .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+..++.      +..+++|
T Consensus        46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L  114 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP------LANLTNL  114 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG------GTTCTTC
T ss_pred             ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh------hcCCCCC
Confidence            789999999999974 55 4788999999999999998 4442  8999999999999999776653      4589999


Q ss_pred             cEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccC
Q 047486          286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ  365 (776)
Q Consensus       286 ~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~  365 (776)
                      ++|++++|.++.++. +..+++|++|++++|.+.+ ++.  +..+++|++|++++ .+.....                 
T Consensus       115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~~~-----------------  172 (466)
T 1o6v_A          115 TGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDLKP-----------------  172 (466)
T ss_dssp             CEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCCGG-----------------
T ss_pred             CEEECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCchh-----------------
Confidence            999999999998876 8899999999999999884 442  47889999998863 3333221                 


Q ss_pred             CCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCC
Q 047486          366 GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA  445 (776)
Q Consensus       366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  445 (776)
                         ...+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|  +..+. +|++|++++|.+++.  ..+..+
T Consensus       173 ---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l  242 (466)
T 1o6v_A          173 ---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLASL  242 (466)
T ss_dssp             ---GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGGGC
T ss_pred             ---hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhhcC
Confidence               12234556666666665543  347778888899998888875444  44444 789999999888764  467788


Q ss_pred             CCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEE
Q 047486          446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRII  525 (776)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  525 (776)
                      ++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++.+..+    ...+++|+.|
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L  314 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYL  314 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEE
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEE
Confidence            899999999999887655  7888999999999999887655  7888999999999998887544    3568899999


Q ss_pred             eCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhc
Q 047486          526 DLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG  605 (776)
Q Consensus       526 dLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~  605 (776)
                      ++++|++++..|.   .                                       .++.|+.|++++|.+++.  ..+.
T Consensus       315 ~L~~n~l~~~~~~---~---------------------------------------~l~~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          315 TLYFNNISDISPV---S---------------------------------------SLTKLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             ECCSSCCSCCGGG---G---------------------------------------GCTTCCEEECCSSCCCCC--GGGT
T ss_pred             ECcCCcCCCchhh---c---------------------------------------cCccCCEeECCCCccCCc--hhhc
Confidence            9999998865441   1                                       157789999999999976  4789


Q ss_pred             cCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCC
Q 047486          606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR  647 (776)
Q Consensus       606 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  647 (776)
                      .+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999999999999998877  89999999999999999964

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=311.66  Aligned_cols=322  Identities=20%  Similarity=0.198  Sum_probs=265.5

Q ss_pred             eEeCcCccccccccccccccCEEeccCcccCCCC---CCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc
Q 047486          335 DLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG  411 (776)
Q Consensus       335 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  411 (776)
                      .++.+++.++.++.....+++.|++++|.+++..   +..+++|++|++++|.+.+..|..|.++++|++|++++|++. 
T Consensus        15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-   93 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-   93 (477)
T ss_dssp             EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-
T ss_pred             EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-
Confidence            3444444444444433445555555555555432   334678899999999999888999999999999999999998 


Q ss_pred             cCCch-hhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhh
Q 047486          412 TIPPC-LGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL  490 (776)
Q Consensus       412 ~~p~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  490 (776)
                      .+|.. +..+. +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+
T Consensus        94 ~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (477)
T 2id5_A           94 LIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL  172 (477)
T ss_dssp             SCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred             ccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence            55554 45554 89999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             cCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEE
Q 047486          491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV  570 (776)
Q Consensus       491 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~  570 (776)
                      ..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|...+.+|...+.                            
T Consensus       173 ~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------  222 (477)
T 2id5_A          173 SHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLY----------------------------  222 (477)
T ss_dssp             TTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTT----------------------------
T ss_pred             cccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccccc----------------------------
Confidence            999999999999999988655443  67899999999999988777655432                            


Q ss_pred             EeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch
Q 047486          571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  650 (776)
Q Consensus       571 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  650 (776)
                                  ...|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|.
T Consensus       223 ------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          223 ------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             ------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             ------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence                        23689999999999977778899999999999999999998889999999999999999999999999


Q ss_pred             hhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCCC
Q 047486          651 QLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDG  705 (776)
Q Consensus       651 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~~  705 (776)
                      .|..+++|++|++++|++++..|.     .|..........+.+||+.|+|...|
T Consensus       291 ~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~c~c~~~~  340 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGNQLTTLEES-----VFHSVGNLETLILDSNPLACDCRLLW  340 (477)
T ss_dssp             TBTTCTTCCEEECCSSCCSCCCGG-----GBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred             HhcCcccCCEEECCCCcCceeCHh-----HcCCCcccCEEEccCCCccCccchHh
Confidence            999999999999999999864332     23333334455678889998887543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.3e-34  Score=295.40  Aligned_cols=260  Identities=31%  Similarity=0.521  Sum_probs=184.2

Q ss_pred             CCCcEEEccCCcCcc--CCCccccCCCCCCEEEccC-CcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCcc
Q 047486          373 PSTKVLLVSNNKLSG--KIPPSICSLSSLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR  449 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  449 (776)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+..+. +|++|++++|.+++.+|..|..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            356666666666666  5666666666666666663 666656666555554 566666666666655565666666666


Q ss_pred             EEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCC
Q 047486          450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH  529 (776)
Q Consensus       450 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~  529 (776)
                      +|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++                         +.|+.|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------------------------~~L~~L~L~~  183 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-------------------------KLFTSMTISR  183 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-------------------------TTCCEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-------------------------hcCcEEECcC
Confidence            666666666655555566666666666666666555555555544                         1455555555


Q ss_pred             CcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCC
Q 047486          530 NEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKS  609 (776)
Q Consensus       530 n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~  609 (776)
                      |.+++.+|..+ .                                       .+. |+.|++++|.+++.+|..|+.+++
T Consensus       184 N~l~~~~~~~~-~---------------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          184 NRLTGKIPPTF-A---------------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             SEEEEECCGGG-G---------------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred             CeeeccCChHH-h---------------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence            55554444332 1                                       022 678888888888888888999999


Q ss_pred             CCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccc
Q 047486          610 LKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGN  689 (776)
Q Consensus       610 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n  689 (776)
                      |+.|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+|
T Consensus       223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred             CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence            99999999999877665 78889999999999999989999999999999999999999999998877888888888899


Q ss_pred             cCCCCCCCCCCC
Q 047486          690 IHLCGEPLTVRC  701 (776)
Q Consensus       690 ~~l~g~pl~~~C  701 (776)
                      +.+||.|+. .|
T Consensus       302 ~~lc~~p~~-~C  312 (313)
T 1ogq_A          302 KCLCGSPLP-AC  312 (313)
T ss_dssp             SEEESTTSS-CC
T ss_pred             CCccCCCCC-CC
Confidence            999998876 46

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.3e-31  Score=286.94  Aligned_cols=309  Identities=20%  Similarity=0.261  Sum_probs=151.6

Q ss_pred             CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccC
Q 047486           31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLREL  110 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L  110 (776)
                      ++++++|+++++.+....+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++| .+.+..|..     +.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l  116 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQNV  116 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TTTC
T ss_pred             cCCceEEEecCCchhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHH-----hcCC
Confidence            3455555555555544433334445 55555555555555444445555555555555555 444433333     3333


Q ss_pred             CCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 047486          111 DLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDL  190 (776)
Q Consensus       111 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  190 (776)
                      ++|++|++++|.++...+..|+++++|++|++++|.+++..|..|.++++|++|++++|.+++.   .+..+++|++|++
T Consensus       117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l  193 (390)
T 3o6n_A          117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV  193 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence            3355555555555533233345555555555555555544444555555555555555555432   1334455555555


Q ss_pred             cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486          191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF  270 (776)
Q Consensus       191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~  270 (776)
                      ++|.+.+..    .+++|++|++++|.+... |..  ..++|++|++++|.+.+.   ..+..+++|++|++++|.++.+
T Consensus       194 ~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          194 SYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI  263 (390)
T ss_dssp             CSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE
T ss_pred             ccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCc
Confidence            555444311    114455555555555422 211  124555555555555422   3445555555555555554433


Q ss_pred             ccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccccc
Q 047486          271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP  350 (776)
Q Consensus       271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  350 (776)
                      ..    ..+..+++|++|++++|.++.+|..+..+++|+.|++++|++. .+|... ..+++|++|++++|.++.++...
T Consensus       264 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~  337 (390)
T 3o6n_A          264 MY----HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLKLST  337 (390)
T ss_dssp             ES----GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCCCCT
T ss_pred             Ch----hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-cccCcCCEEECCCCccceeCchh
Confidence            21    1123445555555555555555544444555555555555554 333332 44455555555555555555555


Q ss_pred             ccccCEEeccCcccC
Q 047486          351 WMNITTLDLRNNRIQ  365 (776)
Q Consensus       351 ~~~L~~L~l~~n~l~  365 (776)
                      +++|+.|++++|++.
T Consensus       338 ~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          338 HHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TCCCSEEECCSSCEE
T ss_pred             hccCCEEEcCCCCcc
Confidence            555566666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-31  Score=287.71  Aligned_cols=311  Identities=22%  Similarity=0.259  Sum_probs=226.0

Q ss_pred             CCCCCEEeCCCCCCccccCChh-HhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCC
Q 047486            4 LSKLTHLDLSFCVLTIEQRTFD-LLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPN   82 (776)
Q Consensus         4 l~~L~~L~Ls~~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~   82 (776)
                      ++++++|+++++.+.    .+| ..+.++++|++|++++|.+.+..+..+..+ ++|++|+|++|.+.+..|..+.++++
T Consensus        44 l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCceEEEecCCchh----hCChhHhcccccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            467788888887763    334 346778888888888888877766677777 78888888888887766777788888


Q ss_pred             CCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCC
Q 047486           83 LQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLT  162 (776)
Q Consensus        83 L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  162 (776)
                      |++|++++| .+.. +|..+    +.++++|++|++++|.+++..|..+..+++|++|++++|.+++.   .+..+++|+
T Consensus       119 L~~L~L~~n-~l~~-l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~  189 (390)
T 3o6n_A          119 LTVLVLERN-DLSS-LPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF  189 (390)
T ss_dssp             CCEEECCSS-CCCC-CCTTT----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred             CCEEECCCC-ccCc-CCHHH----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence            888888888 6663 44332    34555588888888888877777788888888888888887754   256677888


Q ss_pred             EEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcC
Q 047486          163 TFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNL  242 (776)
Q Consensus       163 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  242 (776)
                      +|++++|.+++     +...++|++|++++|.+......  ..++|++|++++|.+++.  ..+..+++|++|++++|.+
T Consensus       190 ~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l  260 (390)
T 3o6n_A          190 HANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL  260 (390)
T ss_dssp             EEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             eeecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence            88888887763     33445788888888877654322  236788888888888743  5677788888888888888


Q ss_pred             ccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCcccccc
Q 047486          243 SGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRI  322 (776)
Q Consensus       243 ~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~  322 (776)
                      .+..+ ..+..+++|++|++++|+++.++..     ...+++|++|++++|.++.+|..+..+++|+.|++++|.+++ +
T Consensus       261 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~  333 (390)
T 3o6n_A          261 EKIMY-HPFVKMQRLERLYISNNRLVALNLY-----GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-L  333 (390)
T ss_dssp             CEEES-GGGTTCSSCCEEECCSSCCCEEECS-----SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-C
T ss_pred             CCcCh-hHccccccCCEEECCCCcCcccCcc-----cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-e
Confidence            74433 6777888888888888887665432     245778888888888888787777777888888888888763 3


Q ss_pred             CCCcccCCccCCeEeCcCccccccc
Q 047486          323 SKSDSPGWKSLIDLDLSNNFMTHIE  347 (776)
Q Consensus       323 ~~~~~~~l~~L~~L~l~~n~l~~~~  347 (776)
                      +   +..+++|+.|++++|.++...
T Consensus       334 ~---~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          334 K---LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             C---CCTTCCCSEEECCSSCEEHHH
T ss_pred             C---chhhccCCEEEcCCCCccchh
Confidence            3   356678888888888776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.5e-31  Score=278.42  Aligned_cols=306  Identities=23%  Similarity=0.290  Sum_probs=179.7

Q ss_pred             CCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCc
Q 047486          252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWK  331 (776)
Q Consensus       252 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~  331 (776)
                      ..+++|++|+++++.+..+++      +..+++|++|++++|.++.++. +..+++|++|++++|.+++ ++  .+..++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~------~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~--~~~~l~  110 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG------IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-IS--ALQNLT  110 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred             hhcccccEEEEeCCccccchh------hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-ch--HHcCCC
Confidence            345556666666665544432      2245555555555555555544 4555555555555555542 22  123344


Q ss_pred             cCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc
Q 047486          332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG  411 (776)
Q Consensus       332 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~  411 (776)
                      +|++|++++                                          |.+.+. +. +..+++|++|++++|....
T Consensus       111 ~L~~L~l~~------------------------------------------n~i~~~-~~-~~~l~~L~~L~l~~n~~~~  146 (347)
T 4fmz_A          111 NLRELYLNE------------------------------------------DNISDI-SP-LANLTKMYSLNLGANHNLS  146 (347)
T ss_dssp             TCSEEECTT------------------------------------------SCCCCC-GG-GTTCTTCCEEECTTCTTCC
T ss_pred             cCCEEECcC------------------------------------------CcccCc-hh-hccCCceeEEECCCCCCcc
Confidence            444444433                                          333322 11 4455555555555554432


Q ss_pred             cCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc
Q 047486          412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG  491 (776)
Q Consensus       412 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  491 (776)
                      .++ .+..+. +|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +.
T Consensus       147 ~~~-~~~~l~-~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  218 (347)
T 4fmz_A          147 DLS-PLSNMT-GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA  218 (347)
T ss_dssp             CCG-GGTTCT-TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GG
T ss_pred             ccc-chhhCC-CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hh
Confidence            322 233333 46666666655554433  5556666666666666654332  5566666666666666655443  55


Q ss_pred             CCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEE
Q 047486          492 SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVA  571 (776)
Q Consensus       492 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~  571 (776)
                      .+++|++|++++|++.+..+    ...+++|+.|++++|.+++. +.  +.                             
T Consensus       219 ~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~--~~-----------------------------  262 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-NA--VK-----------------------------  262 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-GG--GT-----------------------------
T ss_pred             cCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-hh--Hh-----------------------------
Confidence            66666666666666654333    24566677777777766531 10  11                             


Q ss_pred             eccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchh
Q 047486          572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQ  651 (776)
Q Consensus       572 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  651 (776)
                                .++.|+.|++++|.+++.  +.+..+++|+.|++++|.+++..|..|+++++|++|++++|++++..|  
T Consensus       263 ----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--  328 (347)
T 4fmz_A          263 ----------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--  328 (347)
T ss_dssp             ----------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred             ----------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence                      145677888888888764  457888888888888888888888888888888888888888887666  


Q ss_pred             hccccccccccCccCcce
Q 047486          652 LLSVTALALLNLSYNRLW  669 (776)
Q Consensus       652 l~~l~~L~~L~ls~N~l~  669 (776)
                      +..+++|++|++++|+++
T Consensus       329 ~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          329 LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGCTTCSEESSSCC---
T ss_pred             hhhhhccceeehhhhccc
Confidence            778888888888888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=3e-32  Score=283.66  Aligned_cols=250  Identities=25%  Similarity=0.443  Sum_probs=218.9

Q ss_pred             cccCEEeccCcccCC--CCCC---CCCCCcEEEccC-CcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCcc
Q 047486          352 MNITTLDLRNNRIQG--SILV---PPPSTKVLLVSN-NKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI  425 (776)
Q Consensus       352 ~~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~  425 (776)
                      ..++.|++++|.+.+  .+|.   .+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+. +|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCC
Confidence            578999999999998  6654   378999999995 999999999999999999999999999989999988876 899


Q ss_pred             EEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCC-CCcEEEcCCCccCcccchhhcCCCCcCEEEccCC
Q 047486          426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCI-KLEVVNVGKNMISDSFPCWLGSLHELKILVLRSN  504 (776)
Q Consensus       426 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  504 (776)
                      +|++++|.+++.+|..|..+++|++|++++|++++.+|..+..++ +|++|++++|++++..|..+..++ |++|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999999999999999999999999999999999999999998 999999999999999999888876 777777777


Q ss_pred             cccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhc
Q 047486          505 RFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV  584 (776)
Q Consensus       505 ~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (776)
                      ++.+..+...  ..                                                                ++
T Consensus       208 ~l~~~~~~~~--~~----------------------------------------------------------------l~  221 (313)
T 1ogq_A          208 MLEGDASVLF--GS----------------------------------------------------------------DK  221 (313)
T ss_dssp             EEEECCGGGC--CT----------------------------------------------------------------TS
T ss_pred             cccCcCCHHH--hc----------------------------------------------------------------CC
Confidence            7765433322  22                                                                34


Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCc
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS  664 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  664 (776)
                      .|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..|..+++|++|+|++|+++|.+|.. ..+++|+.++++
T Consensus       222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~  299 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA  299 (313)
T ss_dssp             CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred             CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence            556666666666655554 778899999999999999999999999999999999999999999987 889999999999


Q ss_pred             cCc-ceec
Q 047486          665 YNR-LWGR  671 (776)
Q Consensus       665 ~N~-l~g~  671 (776)
                      +|+ ++|.
T Consensus       300 ~N~~lc~~  307 (313)
T 1ogq_A          300 NNKCLCGS  307 (313)
T ss_dssp             SSSEEEST
T ss_pred             CCCCccCC
Confidence            998 7764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=1.8e-30  Score=275.56  Aligned_cols=302  Identities=22%  Similarity=0.320  Sum_probs=134.3

Q ss_pred             CCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCC
Q 047486            4 LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL   83 (776)
Q Consensus         4 l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L   83 (776)
                      +++|++|+++++.+.    .++ .+..+++|++|++++|.+.+..+  +..+ ++|++|++++|.+++ + ..+.++++|
T Consensus        43 l~~L~~L~l~~~~i~----~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n~i~~-~-~~~~~l~~L  112 (347)
T 4fmz_A           43 LESITKLVVAGEKVA----SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTNKITD-I-SALQNLTNL  112 (347)
T ss_dssp             HTTCSEEECCSSCCC----CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             cccccEEEEeCCccc----cch-hhhhcCCccEEEccCCccccchh--hhcC-CcCCEEEccCCcccC-c-hHHcCCCcC
Confidence            344555555555442    222 24445555555555555544422  4444 555555555555442 2 234455555


Q ss_pred             CEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCE
Q 047486           84 QILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTT  163 (776)
Q Consensus        84 ~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  163 (776)
                      ++|++++| .+.+. +.      +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++
T Consensus       113 ~~L~l~~n-~i~~~-~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          113 RELYLNED-NISDI-SP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             SEEECTTS-CCCCC-GG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             CEEECcCC-cccCc-hh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            55555555 33321 11      3333335555555553332222 24555555555555555443222  445555555


Q ss_pred             EEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486          164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS  243 (776)
Q Consensus       164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  243 (776)
                      |++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+  +..+++|++|++++|.+.
T Consensus       182 L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  256 (347)
T 4fmz_A          182 LSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS  256 (347)
T ss_dssp             EECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEccCCcccc-ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence            5555555442 222 4445555555555554444332 2222445555555554442221  444455555555555444


Q ss_pred             cccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcc-hhhhCCcccceEecccCcccccc
Q 047486          244 GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRI  322 (776)
Q Consensus       244 ~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~  322 (776)
                      + +  ..+..+++|++|++++|.++.++      .+..+++|++|++++|.++..+ ..+..+++|+.|++++|.+++..
T Consensus       257 ~-~--~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          257 D-I--NAVKDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             C-C--GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             C-C--hhHhcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            2 2  23444445555555555443331      1223444444444444444322 33444444444444444444322


Q ss_pred             CCCcccCCccCCeEeCcCccc
Q 047486          323 SKSDSPGWKSLIDLDLSNNFM  343 (776)
Q Consensus       323 ~~~~~~~l~~L~~L~l~~n~l  343 (776)
                      |   +..+++|++|++++|.+
T Consensus       328 ~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          328 P---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             G---GGGCTTCSEESSSCC--
T ss_pred             C---hhhhhccceeehhhhcc
Confidence            2   23344444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=9.1e-31  Score=297.88  Aligned_cols=310  Identities=20%  Similarity=0.259  Sum_probs=189.3

Q ss_pred             CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccC
Q 047486           31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLREL  110 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L  110 (776)
                      +.+++.++++++.+....+..+..+ ++|++|+|++|.+.+..|..|+.+++|++|+|++| .+.+..|..     +..+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH-----HcCC
Confidence            4566666666666666555555666 66666666666666555566666666666666666 565544443     3444


Q ss_pred             CCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 047486          111 DLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDL  190 (776)
Q Consensus       111 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  190 (776)
                      ++|++|+|++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..   ++.+++|++|++
T Consensus       123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l  199 (597)
T 3oja_B          123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV  199 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence            44666666666666444444566666666666666666666666666666666666666666432   344566666666


Q ss_pred             cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486          191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF  270 (776)
Q Consensus       191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~  270 (776)
                      ++|.+.+..    .+++|+.|++++|.+....+ .+  .++|+.|++++|.+++.   ..+..+++|++|++++|.+..+
T Consensus       200 ~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~  269 (597)
T 3oja_B          200 SYNLLSTLA----IPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKI  269 (597)
T ss_dssp             CSSCCSEEE----CCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEE
T ss_pred             ccCcccccc----CCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCC
Confidence            666655421    22556666666666653222 11  24666666666666532   4566666666666666665443


Q ss_pred             ccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCcccccccccc
Q 047486          271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP  350 (776)
Q Consensus       271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  350 (776)
                      ...    .+..+++|++|++++|.++.+|..+..+++|+.|++++|.+. .+|..+ ..+++|++|++++|.++.++...
T Consensus       270 ~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~~N~l~~~~~~~  343 (597)
T 3oja_B          270 MYH----PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLDHNSIVTLKLST  343 (597)
T ss_dssp             ESG----GGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECCSSCCCCCCCCT
T ss_pred             CHH----HhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECCCCCCCCcChhh
Confidence            221    234566666666666666666655556666677777766666 444443 55666777777777766666666


Q ss_pred             ccccCEEeccCcccCC
Q 047486          351 WMNITTLDLRNNRIQG  366 (776)
Q Consensus       351 ~~~L~~L~l~~n~l~~  366 (776)
                      +++|+.|++++|.+.+
T Consensus       344 ~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          344 HHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             TCCCSEEECCSSCEEH
T ss_pred             cCCCCEEEeeCCCCCC
Confidence            6677777777776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=9.5e-31  Score=297.71  Aligned_cols=308  Identities=21%  Similarity=0.233  Sum_probs=144.8

Q ss_pred             CCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCC
Q 047486            5 SKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQ   84 (776)
Q Consensus         5 ~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~   84 (776)
                      ++++.++++++.+.   ...+..+.++++|++|+|++|.+.+..|..+..+ ++|++|+|++|.+.+..|..|+++++|+
T Consensus        51 ~~l~~l~l~~~~l~---~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           51 NNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             CCCSEEEESSCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCceEEEeeCCCCC---CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            44455555555442   1112234445555555555555555444445555 5555555555555544444445555555


Q ss_pred             EEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEE
Q 047486           85 ILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTF  164 (776)
Q Consensus        85 ~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  164 (776)
                      +|+|++| .+.+..+..     +..+++|++|++++|.+++..|..|+.+++|++|++++|.+++.   .++.+++|++|
T Consensus       127 ~L~L~~n-~l~~l~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L  197 (597)
T 3oja_B          127 VLVLERN-DLSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA  197 (597)
T ss_dssp             EEECCSS-CCCCCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEE
T ss_pred             EEEeeCC-CCCCCCHHH-----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhh
Confidence            5555555 444222211     23333355555555555544444555555555555555555432   13344455555


Q ss_pred             EccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCcc
Q 047486          165 DLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG  244 (776)
Q Consensus       165 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~  244 (776)
                      ++++|.+++     +...++|++|++++|.+....+..  .++|+.|++++|.+++  +..+..+++|++|++++|.+.+
T Consensus       198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred             hcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence            555554442     223334555555555544322211  1345555555555543  2444455555555555555543


Q ss_pred             ccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCC
Q 047486          245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISK  324 (776)
Q Consensus       245 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~  324 (776)
                      ..+ ..|..+++|++|++++|.++.++..     ...+++|++|++++|.++.+|..+..+++|+.|++++|.+.+ ++ 
T Consensus       269 ~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~-  340 (597)
T 3oja_B          269 IMY-HPFVKMQRLERLYISNNRLVALNLY-----GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK-  340 (597)
T ss_dssp             EES-GGGTTCSSCCEEECTTSCCCEEECS-----SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC-
T ss_pred             CCH-HHhcCccCCCEEECCCCCCCCCCcc-----cccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC-cC-
Confidence            322 4445555555555555554433221     123455555555555555555444455555555555555442 22 


Q ss_pred             CcccCCccCCeEeCcCcccc
Q 047486          325 SDSPGWKSLIDLDLSNNFMT  344 (776)
Q Consensus       325 ~~~~~l~~L~~L~l~~n~l~  344 (776)
                        +..+++|+.|++++|.+.
T Consensus       341 --~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          341 --LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             --CCTTCCCSEEECCSSCEE
T ss_pred             --hhhcCCCCEEEeeCCCCC
Confidence              133445555555555444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-29  Score=265.58  Aligned_cols=285  Identities=22%  Similarity=0.279  Sum_probs=208.3

Q ss_pred             cCCeEeCcCccccccccccccccCEEeccCcccCCCC---CCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 047486          332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN  408 (776)
Q Consensus       332 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  408 (776)
                      .++.++++++.++.++....++++.|++++|.+.+..   +..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  113 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH  113 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence            3455555555555544444445555555555554432   2346778888888888888888888888999999999998


Q ss_pred             CcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcC--CCChhhhcCCCCcEEEcCCCccCccc
Q 047486          409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG--PLPRSLAKCIKLEVVNVGKNMISDSF  486 (776)
Q Consensus       409 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~  486 (776)
                      +. .+|..+.   ++|++|++++|.+++..+..|..+++|+.|++++|.++.  ..+..+..+ +|++|++++|++++ +
T Consensus       114 l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          114 LV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I  187 (332)
T ss_dssp             CC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred             CC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence            87 6776654   478999999998888777788888899999999988863  667777777 88888888888876 3


Q ss_pred             chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486          487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE  566 (776)
Q Consensus       487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~  566 (776)
                      |..+.  ++|++|++++|.+.+..+...  ..+++|+.|++++|.+++..|.. +.                        
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~-~~------------------------  238 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGS-LS------------------------  238 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTG-GG------------------------
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhH-hh------------------------
Confidence            43332  688888888888877655443  56788888888888887644322 11                        


Q ss_pred             eEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcccccc------CCCcEEecc
Q 047486          567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM------TALESLDLS  640 (776)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls  640 (776)
                                     .++.|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|...      ..|+.|+++
T Consensus       239 ---------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~  302 (332)
T 2ft3_A          239 ---------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF  302 (332)
T ss_dssp             ---------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECC
T ss_pred             ---------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEee
Confidence                           1467788888888888 677778888888888888888887766666553      568888888


Q ss_pred             CccCc--CCCchhhccccccccccCccCc
Q 047486          641 FNKLD--GRIPEQLLSVTALALLNLSYNR  667 (776)
Q Consensus       641 ~N~l~--~~~p~~l~~l~~L~~L~ls~N~  667 (776)
                      +|.+.  +..|.+|..++.|+.+++++|+
T Consensus       303 ~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cCcccccccCcccccccchhhhhhccccc
Confidence            88887  6777788888888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.9e-29  Score=261.58  Aligned_cols=286  Identities=20%  Similarity=0.223  Sum_probs=172.9

Q ss_pred             cCCeEeCcCccccccccccccccCEEeccCcccCCCCC---CCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCc
Q 047486          332 SLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSIL---VPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN  408 (776)
Q Consensus       332 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  408 (776)
                      +++.++++++.++.++....+.++.|++++|.+++..+   ..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            44555555555555444334455555555555544322   235666777777777776667777777777777777777


Q ss_pred             CcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcC--CCChhhhcCCCCcEEEcCCCccCccc
Q 047486          409 LSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG--PLPRSLAKCIKLEVVNVGKNMISDSF  486 (776)
Q Consensus       409 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~  486 (776)
                      ++ .+|..+.   ++|++|++++|.+++..+..|..+++|++|++++|.++.  ..+..+..+++|++|++++|.++.. 
T Consensus       112 l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-  186 (330)
T 1xku_A          112 LK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-  186 (330)
T ss_dssp             CS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred             CC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-
Confidence            76 5665543   367777777777777666677777777777777777753  5566677777777777777776643 


Q ss_pred             chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486          487 PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE  566 (776)
Q Consensus       487 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~  566 (776)
                      |..+.  ++|++|++++|++.+..+...  ..+++|+.|++++|.+++..+.. +.                        
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~------------------------  237 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISAVDNGS-LA------------------------  237 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCEECTTT-GG------------------------
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCceeChhh-cc------------------------
Confidence            33222  566777777776665444332  45566666666666665433211 11                        


Q ss_pred             eEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccc------cCCCcEEecc
Q 047486          567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN------MTALESLDLS  640 (776)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls  640 (776)
                                     .++.|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|..      .+.|+.|+++
T Consensus       238 ---------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~  301 (330)
T 1xku_A          238 ---------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF  301 (330)
T ss_dssp             ---------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             ---------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence                           1345666666666666 55666666666666666666666555555533      2556666666


Q ss_pred             CccCcC--CCchhhccccccccccCccCc
Q 047486          641 FNKLDG--RIPEQLLSVTALALLNLSYNR  667 (776)
Q Consensus       641 ~N~l~~--~~p~~l~~l~~L~~L~ls~N~  667 (776)
                      +|.+..  ..|..|..+..++.+++++|+
T Consensus       302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          302 SNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCcccccccCccccccccceeEEEecccC
Confidence            666642  445566666666666666663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.3e-29  Score=261.53  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=77.4

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK  192 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  192 (776)
                      +++++++++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.++.++++|++|++++
T Consensus        35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            666777777666 4555443  5677777777777766666777777777777777777766677777777777777777


Q ss_pred             CcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486          193 NMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS  243 (776)
Q Consensus       193 n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  243 (776)
                      |.+....+...  ++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            76653222111  44555555555554333344555555555555555553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9.8e-33  Score=305.26  Aligned_cols=291  Identities=21%  Similarity=0.191  Sum_probs=186.1

Q ss_pred             ccceEecccCcccc----ccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccC
Q 047486          307 ELYLLDLSNNRIQG----RISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSN  382 (776)
Q Consensus       307 ~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  382 (776)
                      +|++|++++|.+++    .++..+ ..+++|++|++++|.++......+..             ......++|++|++++
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------~l~~~~~~L~~L~L~~  151 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCE-------------GLLDPQCRLEKLQLEY  151 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHH-------------HHTSTTCCCCEEECTT
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHH-------------HHhcCCCcceEEECCC
Confidence            56777777776653    222222 45566666666666655432211100             0111234566777777


Q ss_pred             CcCccCC----CccccCCCCCCEEEccCCcCcccCCchhhh----cCCCccEEECCCCcCCcc----CcccccCCCCccE
Q 047486          383 NKLSGKI----PPSICSLSSLQYLSLSDNNLSGTIPPCLGN----FSTELITLHLKNNSLEGH----IHDTFANASHLRS  450 (776)
Q Consensus       383 n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~----~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~  450 (776)
                      |.+.+..    +..+..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++.    ++..+..+++|++
T Consensus       152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  231 (461)
T 1z7x_W          152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE  231 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccE
Confidence            7666533    455666788888888888876543333332    223788888888888764    4666777888888


Q ss_pred             EEcCCCcCcCCC-----ChhhhcCCCCcEEEcCCCccCcc----cchhhcCCCCcCEEEccCCcccccCCCCCC---CcC
Q 047486          451 LDLNSNKLEGPL-----PRSLAKCIKLEVVNVGKNMISDS----FPCWLGSLHELKILVLRSNRFYGPLCNSNI---TFP  518 (776)
Q Consensus       451 L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~  518 (776)
                      |++++|.+++..     +..+..+++|++|++++|.+++.    ++..+..+++|++|++++|++.+..+....   ...
T Consensus       232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  311 (461)
T 1z7x_W          232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP  311 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred             EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence            888888877542     22233578888888888888764    566677788888888888887643221110   112


Q ss_pred             CCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc
Q 047486          519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG  598 (776)
Q Consensus       519 l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  598 (776)
                      .++|+.|++++|.+++.....+                                    ......++.|+.|++++|.+++
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l------------------------------------~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHF------------------------------------SSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHH------------------------------------HHHHHHCSSCCEEECCSSBCHH
T ss_pred             CccceeeEcCCCCCchHHHHHH------------------------------------HHHHhhCCCccEEEccCCcccc
Confidence            3578888888888764211110                                    0111225678888888888877


Q ss_pred             cchhhhcc-----CCCCCEEeCCCCcCcc----cCCccccccCCCcEEeccCccCcCC
Q 047486          599 EIPEVLGN-----FKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSFNKLDGR  647 (776)
Q Consensus       599 ~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~  647 (776)
                      ..+..+..     .++|+.|+|++|.+++    .+|..+..+++|++|||++|++++.
T Consensus       356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            66655543     6788888888888886    6777788888888888888888754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-28  Score=258.65  Aligned_cols=289  Identities=21%  Similarity=0.208  Sum_probs=208.7

Q ss_pred             CCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCC
Q 047486           33 KLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL  112 (776)
Q Consensus        33 ~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~  112 (776)
                      +++.++++++.+... |..+   ++++++|++++|.+++..+..+.++++|++|++++| .+.+..|..     +..+++
T Consensus        32 ~l~~l~~~~~~l~~l-p~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~  101 (330)
T 1xku_A           32 HLRVVQCSDLGLEKV-PKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGA-----FAPLVK  101 (330)
T ss_dssp             ETTEEECTTSCCCSC-CCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCTT
T ss_pred             CCeEEEecCCCcccc-CccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHH-----hcCCCC
Confidence            677788877777654 4333   367788888888887666667778888888888887 777655655     455555


Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCC--CCCccccCCCCCCEEEc
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG--GVPSWLFTLPSLLSIDL  190 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l  190 (776)
                      |++|++++|.++ .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+..  ..+..+.++++|++|++
T Consensus       102 L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          102 LERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            888888888877 4555444  678888888888877767777888888888888887753  56677778888888888


Q ss_pred             cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486          191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF  270 (776)
Q Consensus       191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~  270 (776)
                      ++|.++......  .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|+++.+
T Consensus       179 ~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l  255 (330)
T 1xku_A          179 ADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKV  255 (330)
T ss_dssp             CSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred             CCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEECCCCcCccC
Confidence            888777543322  277888888888888777788888888888888888887 44446778888888888888887765


Q ss_pred             ccccccccccCCCCccEEeccCCCCCCcch-hhh------CCcccceEecccCcccc-ccCCCcccCCccCCeEeCcCcc
Q 047486          271 TSSANISIKYSLPSLKVLRFAYCNITEFPG-FLR------NSEELYLLDLSNNRIQG-RISKSDSPGWKSLIDLDLSNNF  342 (776)
Q Consensus       271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~------~~~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~  342 (776)
                      +..     +..+++|++|++++|.++.++. .+.      ..+.++.+++++|.+.. .++...|..+..++.+++++|+
T Consensus       256 p~~-----l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          256 PGG-----LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTT-----TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             Chh-----hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            543     3467888888888888887763 332      23678888998888753 3444556778888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.5e-33  Score=306.22  Aligned_cols=392  Identities=18%  Similarity=0.159  Sum_probs=193.0

Q ss_pred             CCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCC----ChhhHhhccCCccEEEcCCCCCCccCCCCCC-C
Q 047486            5 SKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLI----KPFSLLNLSSTMTDLDLGGTRIKGNFPDDIF-R   79 (776)
Q Consensus         5 ~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~-~   79 (776)
                      ++|++||++++.+..  ..+...+..+++|++|++++|.+...    ++..+..+ ++|++|+|++|.+.+..+..+. .
T Consensus         3 ~~l~~L~Ls~~~l~~--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ccceehhhhhcccCc--hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHH
Confidence            456777777777641  12334466677777777777776643    24455555 6677777777666543221111 1


Q ss_pred             CC----CCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhh
Q 047486           80 LP----NLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHV  155 (776)
Q Consensus        80 l~----~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~  155 (776)
                      ++    +|++|++++| .+.+...                         ..++..+..+++|++|++++|.+++..+..+
T Consensus        80 l~~~~~~L~~L~L~~n-~i~~~~~-------------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  133 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNC-CLTGAGC-------------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  133 (461)
T ss_dssp             TCSTTCCCCEEECTTS-CCBGGGH-------------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             HhhCCCceeEEEccCC-CCCHHHH-------------------------HHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence            11    3455555444 3331100                         1234445555555555555555443323222


Q ss_pred             c-----CCCCCCEEEccCCcCCCCC----CccccCCCCCCEEEccCCcCCCcCC-CC-----CCCCCCcEEEccCCcCCC
Q 047486          156 S-----GLSYLTTFDLSGNYFQGGV----PSWLFTLPSLLSIDLSKNMLNGPID-LF-----QLPNSLQDVRLEENEIRG  220 (776)
Q Consensus       156 ~-----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~-~~-----~~~~~L~~L~L~~n~i~~  220 (776)
                      .     ..++|++|++++|.+++..    +..+..+++|++|++++|.+..... .+     ...++|++|++++|.+++
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            2     1344555555555555322    3334445555555555555432110 00     011355555555555543


Q ss_pred             C----CCccccCCCCCCEEECCCCcCcccc----CccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccC
Q 047486          221 T----IPNSTFQLVNLTILDLSSNNLSGAI----RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY  292 (776)
Q Consensus       221 ~----~~~~~~~l~~L~~L~Ls~n~l~~~i----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~  292 (776)
                      .    ++..+..+++|++|++++|.+.+..    ....+..+++|++|++++|.++.....                   
T Consensus       214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------  274 (461)
T 1z7x_W          214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-------------------  274 (461)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-------------------
T ss_pred             HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-------------------
Confidence            2    3445555666666666666654221    111222344455555555443221111                   


Q ss_pred             CCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCC
Q 047486          293 CNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPP  372 (776)
Q Consensus       293 n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  372 (776)
                          .++..+..+++|++|++++|.+.+..+..+...+                                      ....
T Consensus       275 ----~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--------------------------------------~~~~  312 (461)
T 1z7x_W          275 ----DLCRVLRAKESLKELSLAGNELGDEGARLLCETL--------------------------------------LEPG  312 (461)
T ss_dssp             ----HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------------------------------TSTT
T ss_pred             ----HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------------------------------ccCC
Confidence                1455666677778888877776543221110000                                      0001


Q ss_pred             CCCcEEEccCCcCccC----CCccccCCCCCCEEEccCCcCcccCCchhhhc----CCCccEEECCCCcCCc----cCcc
Q 047486          373 PSTKVLLVSNNKLSGK----IPPSICSLSSLQYLSLSDNNLSGTIPPCLGNF----STELITLHLKNNSLEG----HIHD  440 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~----~~~L~~L~L~~n~l~~----~~~~  440 (776)
                      ++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+...    .++|++|++++|.+++    .++.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            2233333333433322    34455566777777777777764434333321    2356777777776664    4555


Q ss_pred             cccCCCCccEEEcCCCcCcCCCChhhh-----cCCCCcEEEcCCCccCccc
Q 047486          441 TFANASHLRSLDLNSNKLEGPLPRSLA-----KCIKLEVVNVGKNMISDSF  486 (776)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~  486 (776)
                      .+..+++|++|++++|++++.....+.     ...+|+.|++.++.+....
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence            566666666666666666543222211     1234666666655554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=2.2e-30  Score=296.07  Aligned_cols=430  Identities=14%  Similarity=0.072  Sum_probs=260.1

Q ss_pred             ChhHhhcCCCCCCEEeCCCccC-----------CCCC----hhhHhhccCCccEEEcCCCCCCccCCCCCCC-CCC-CCE
Q 047486           23 TFDLLASNLTKLSLLHLGATNM-----------SLIK----PFSLLNLSSTMTDLDLGGTRIKGNFPDDIFR-LPN-LQI   85 (776)
Q Consensus        23 ~~~~~l~~l~~L~~L~L~~~~~-----------~~~~----~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~-l~~-L~~   85 (776)
                      ..+..+.++++|++|+++++..           .+..    +.....+ ++|++|+|++|.+++..+..+.. +++ |++
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~  142 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLET  142 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence            3455667888888888876532           1111    1112256 78888888888877665555544 344 888


Q ss_pred             EeccCCCCcccc-CCCCCCCCCcccCCCCcEEEccCCccccc----ccccccCCCCCCEEEccCCcccC----CCchhhc
Q 047486           86 LFLNLNSQLTGY-LPKSNWSSPLRELDLLSVLDIGFCNFTGS----IPTSIGNLTRATEIAFASNHFTG----QLPHHVS  156 (776)
Q Consensus        86 L~Ls~n~~~~~~-~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~~~  156 (776)
                      |++++|..+... ++..     ...+++|++|+|++|.+++.    ++..+..+++|++|++++|.+++    .++..+.
T Consensus       143 L~L~~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          143 LKLDKCSGFTTDGLLSI-----VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             EEEESCEEEEHHHHHHH-----HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             EECcCCCCcCHHHHHHH-----HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            888887212211 1110     23566689999998887765    34455678899999999888873    3445567


Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCC----cCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCC
Q 047486          157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG----PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNL  232 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L  232 (776)
                      ++++|++|++++|.+.+ +|..+..+++|++|+++......    .......+++|+.|+++++.. +.+|..+..+++|
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L  295 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI  295 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence            88999999999988874 67778888999999998643221    112234558899999988643 3677778889999


Q ss_pred             CEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccC-----------CCCCC--cc
Q 047486          233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY-----------CNITE--FP  299 (776)
Q Consensus       233 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~--lp  299 (776)
                      ++|++++|.+.+......+..+++|++|+++ +.   +...........+++|++|++++           +.++.  ++
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~---~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV---IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG---GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc---cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            9999999987644333456889999999998 33   22221111123466777777773           33432  22


Q ss_pred             hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEE
Q 047486          300 GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLL  379 (776)
Q Consensus       300 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~  379 (776)
                      .....+++|+.|+++.+.+++..+..+...+++|++|+++.+.                                     
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-------------------------------------  414 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-------------------------------------  414 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------------------------------------
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------------------------------------
Confidence            3344566677776666666544333321223444444432110                                     


Q ss_pred             ccCCcCccC-----CCccccCCCCCCEEEccCCc--CcccCCchhhhcCCCccEEECCCCcCCcc-CcccccCCCCccEE
Q 047486          380 VSNNKLSGK-----IPPSICSLSSLQYLSLSDNN--LSGTIPPCLGNFSTELITLHLKNNSLEGH-IHDTFANASHLRSL  451 (776)
Q Consensus       380 l~~n~l~~~-----~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  451 (776)
                       ..|.+++.     ++..+.++++|++|++++|.  +++..+..+....++|++|++++|.+++. ++..+..+++|+.|
T Consensus       415 -~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          415 -REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             -CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             -CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence             02222221     22234557777888776543  55444445555444677777777776642 33444566777777


Q ss_pred             EcCCCcCcCC-CChhhhcCCCCcEEEcCCCccCcccchhh-cCCCCcCEEEcc
Q 047486          452 DLNSNKLEGP-LPRSLAKCIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLR  502 (776)
Q Consensus       452 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~  502 (776)
                      ++++|.+++. ++..+..+++|++|++++|++++.....+ ..++.+....+.
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence            7777776543 23334556677777777776665433333 244555444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.9e-28  Score=257.03  Aligned_cols=279  Identities=18%  Similarity=0.143  Sum_probs=148.0

Q ss_pred             CccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcC
Q 047486          330 WKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL  409 (776)
Q Consensus       330 l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l  409 (776)
                      |+.....+.+++.++.++....+++++|++++|.                     +.+..+..+.++++|++|++++|.+
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~---------------------i~~~~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNR---------------------ITYISNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSC---------------------CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCeEeeCCCCCcccccccccccCcEEECCCCc---------------------CcccCHHHhccCCCCCEEECCCCcc
Confidence            3444456666666666665444455555555554                     4444444555555555555555555


Q ss_pred             cccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcCCC-ccCcccc
Q 047486          410 SGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVGKN-MISDSFP  487 (776)
Q Consensus       410 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~l~~~~~  487 (776)
                      ++..|..+..+. +|++|++++|.+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+
T Consensus        89 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~  167 (353)
T 2z80_A           89 NTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR  167 (353)
T ss_dssp             CEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             CccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence            543344444443 45555555555555444445555555555555555554333 34555555555555555 3444444


Q ss_pred             hhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccce
Q 047486          488 CWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES  567 (776)
Q Consensus       488 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~  567 (776)
                      ..+..+++|++|++++|++.+..+...  ..+++|+.|++++|.++ .+|...                           
T Consensus       168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~---------------------------  217 (353)
T 2z80_A          168 KDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIF---------------------------  217 (353)
T ss_dssp             TTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHH---------------------------
T ss_pred             HHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhh---------------------------
Confidence            555555555555555555555444333  34555566666555553 222111                           


Q ss_pred             EEEEeccchhhHHHhhcceeEEecCCCcccccchhhhc---cCCCCCEEeCCCCcCcc----cCCccccccCCCcEEecc
Q 047486          568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLG---NFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLS  640 (776)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls  640 (776)
                                  ...++.|+.|++++|.+++..+..+.   ....++.++|+++.+++    .+|..+.++++|++|||+
T Consensus       218 ------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls  285 (353)
T 2z80_A          218 ------------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS  285 (353)
T ss_dssp             ------------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred             ------------hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence                        11134556666666666554433322   34456666666666654    245556666666666666


Q ss_pred             CccCcCCCchh-hccccccccccCccCcceecCC
Q 047486          641 FNKLDGRIPEQ-LLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       641 ~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                      +|+++. +|.. |..+++|++|++++|++.+..|
T Consensus       286 ~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            666663 3333 4666666666666666665444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.7e-27  Score=244.26  Aligned_cols=275  Identities=21%  Similarity=0.218  Sum_probs=173.5

Q ss_pred             EEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcc--cCCchhhhcCCCccEEECCCCc
Q 047486          356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG--TIPPCLGNFSTELITLHLKNNS  433 (776)
Q Consensus       356 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~L~~n~  433 (776)
                      .++++++.++......++++++|++++|.+....+..|.++++|++|++++|.+..  ..|..+.... +|++|++++|.
T Consensus        11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~   89 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNG   89 (306)
T ss_dssp             EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCS
T ss_pred             EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCc
Confidence            34444444443333334566777777777775555567888888888888888762  2255555554 78888888888


Q ss_pred             CCccCcccccCCCCccEEEcCCCcCcCCCC-hhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccc-cCC
Q 047486          434 LEGHIHDTFANASHLRSLDLNSNKLEGPLP-RSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYG-PLC  511 (776)
Q Consensus       434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~  511 (776)
                      +++ ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+
T Consensus        90 i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            874 45567788888888888888886655 577888888888888888887777778888888888888887765 333


Q ss_pred             CCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEec
Q 047486          512 NSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDF  591 (776)
Q Consensus       512 ~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  591 (776)
                      ...  ..+++|+.|++++|.+++..|.. +..                                       ++.|+.|++
T Consensus       169 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~---------------------------------------l~~L~~L~L  206 (306)
T 2z66_A          169 DIF--TELRNLTFLDLSQCQLEQLSPTA-FNS---------------------------------------LSSLQVLNM  206 (306)
T ss_dssp             SCC--TTCTTCCEEECTTSCCCEECTTT-TTT---------------------------------------CTTCCEEEC
T ss_pred             hHH--hhCcCCCEEECCCCCcCCcCHHH-hcC---------------------------------------CCCCCEEEC
Confidence            332  45666666666666665433322 111                                       345566666


Q ss_pred             CCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccC-CCcEEeccCccCcCCCc--hhhccccccccccCccCcc
Q 047486          592 SRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT-ALESLDLSFNKLDGRIP--EQLLSVTALALLNLSYNRL  668 (776)
Q Consensus       592 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l  668 (776)
                      ++|.+++..+..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++..+  .....+...+.+.+..+.+
T Consensus       207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~  286 (306)
T 2z66_A          207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM  286 (306)
T ss_dssp             TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC
T ss_pred             CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc
Confidence            66666655555566666666666666666666666666653 66666666666654322  1122233344444455555


Q ss_pred             eecCCC
Q 047486          669 WGRIPR  674 (776)
Q Consensus       669 ~g~iP~  674 (776)
                      .+..|.
T Consensus       287 ~C~~p~  292 (306)
T 2z66_A          287 ECATPS  292 (306)
T ss_dssp             BEEESG
T ss_pred             ccCCch
Confidence            544443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-29  Score=288.61  Aligned_cols=437  Identities=14%  Similarity=0.100  Sum_probs=287.9

Q ss_pred             CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCC---CccCCCCCC------------CCCCCCEEeccCCCCccccCC
Q 047486           35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRI---KGNFPDDIF------------RLPNLQILFLNLNSQLTGYLP   99 (776)
Q Consensus        35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l---~~~~~~~l~------------~l~~L~~L~Ls~n~~~~~~~p   99 (776)
                      +.+.+..+. ....+..+..+ ++|++|+|+++..   .+.+|..++            ++++|++|+|++| .+.+..+
T Consensus        53 ~~l~~~~~~-~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~  129 (592)
T 3ogk_B           53 EHVTMALCY-TATPDRLSRRF-PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL  129 (592)
T ss_dssp             CEEEESCGG-GSCHHHHHHHC-TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHH
T ss_pred             cEEEEeecc-ccChHHHHHhC-CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHH
Confidence            345554432 23335556778 8999999988643   133444444            6899999999999 7776544


Q ss_pred             CCCCCCCccc-C-CCCcEEEccCCc-ccc-cccccccCCCCCCEEEccCCcccCC----CchhhcCCCCCCEEEccCCcC
Q 047486          100 KSNWSSPLRE-L-DLLSVLDIGFCN-FTG-SIPTSIGNLTRATEIAFASNHFTGQ----LPHHVSGLSYLTTFDLSGNYF  171 (776)
Q Consensus       100 ~~~~~~~l~~-L-~~L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l  171 (776)
                      ..     +.. + .+|++|++++|. ++. .++.....+++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       130 ~~-----l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~  204 (592)
T 3ogk_B          130 DR-----LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF  204 (592)
T ss_dssp             HH-----HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred             HH-----HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence            43     222 2 239999999987 221 2233345889999999999998766    344567899999999999999


Q ss_pred             CC----CCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCC---CCCCccccCCCCCCEEECCCCcCcc
Q 047486          172 QG----GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIR---GTIPNSTFQLVNLTILDLSSNNLSG  244 (776)
Q Consensus       172 ~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~  244 (776)
                      ++    .++..+.++++|++|++++|.+.+....+..+++|++|+++.....   ...+..+..+++|+.|+++++... 
T Consensus       205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-  283 (592)
T 3ogk_B          205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-  283 (592)
T ss_dssp             SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-
T ss_pred             CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-
Confidence            73    3445567899999999999998875555555599999999864332   234567788999999999986443 


Q ss_pred             ccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC--CcchhhhCCcccceEeccc-------
Q 047486          245 AIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT--EFPGFLRNSEELYLLDLSN-------  315 (776)
Q Consensus       245 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~~~~L~~L~L~~-------  315 (776)
                      .++ ..+..+++|++|++++|.++.   .........+++|++|+++ +.+.  .++.....+++|++|++++       
T Consensus       284 ~l~-~~~~~~~~L~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~  358 (592)
T 3ogk_B          284 EMP-ILFPFAAQIRKLDLLYALLET---EDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGM  358 (592)
T ss_dssp             TGG-GGGGGGGGCCEEEETTCCCCH---HHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred             HHH-HHHhhcCCCcEEecCCCcCCH---HHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence            444 567889999999999998432   2111112356666666666 2222  2223334555666666652       


Q ss_pred             ----CccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCc
Q 047486          316 ----NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPP  391 (776)
Q Consensus       316 ----n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~  391 (776)
                          +.+++.........                                          +++|++|+++.+.+++..+.
T Consensus       359 ~~~~~~~~~~~~~~l~~~------------------------------------------~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          359 EDEEGLVSQRGLIALAQG------------------------------------------CQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             SSTTCCCCHHHHHHHHHH------------------------------------------CTTCSEEEEEESCCCHHHHH
T ss_pred             ccccCccCHHHHHHHHhh------------------------------------------CccCeEEEeecCCccHHHHH
Confidence                22221111000111                                          23445555555555555455


Q ss_pred             cccC-CCCCCEEEcc----CCcCccc-----CCchhhhcCCCccEEECCCCc--CCccCccccc-CCCCccEEEcCCCcC
Q 047486          392 SICS-LSSLQYLSLS----DNNLSGT-----IPPCLGNFSTELITLHLKNNS--LEGHIHDTFA-NASHLRSLDLNSNKL  458 (776)
Q Consensus       392 ~~~~-~~~L~~L~Ls----~n~l~~~-----~p~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l  458 (776)
                      .+.. +++|++|+++    .|.+++.     ++..+..+. +|++|++++|.  +++.....+. .+++|++|++++|.+
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l  475 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE  475 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC
Confidence            5554 7889999996    5667642     333344454 89999997654  6655444443 488999999999998


Q ss_pred             cCC-CChhhhcCCCCcEEEcCCCccCccc-chhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCC
Q 047486          459 EGP-LPRSLAKCIKLEVVNVGKNMISDSF-PCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSH  529 (776)
Q Consensus       459 ~~~-~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~  529 (776)
                      ++. ++..+..+++|++|++++|.+++.. +.....+++|++|++++|++++...... ...++.+....+..
T Consensus       476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYWNIELIPS  547 (592)
T ss_dssp             SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTEEEEEECC
T ss_pred             CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCcEEEEecC
Confidence            863 4556688999999999999987653 4445679999999999999876533222 23456555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.3e-26  Score=252.76  Aligned_cols=230  Identities=23%  Similarity=0.227  Sum_probs=134.2

Q ss_pred             CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486          372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  451 (776)
                      .++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+. +|++|++++|.+++..+..|..+++|++|
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            34555666666666655566666666666666666666644444444443 56666666666665555556666666666


Q ss_pred             EcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCC
Q 047486          452 DLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHN  530 (776)
Q Consensus       452 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n  530 (776)
                      +|++|+++...+..|..+++|+.|++++| .+....+..|..+++|++|++++|++.+. +.   ...            
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~---~~~------------  216 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN---LTP------------  216 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC---CTT------------
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc---ccc------------
Confidence            66666665555555556666666666553 33333333444555555555555544431 10   122            


Q ss_pred             cCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCC
Q 047486          531 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL  610 (776)
Q Consensus       531 ~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  610 (776)
                                                                          ++.|+.|+|++|.+++..|..|.++++|
T Consensus       217 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  244 (452)
T 3zyi_A          217 ----------------------------------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSL  244 (452)
T ss_dssp             ----------------------------------------------------CTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred             ----------------------------------------------------cccccEEECcCCcCcccCcccccCccCC
Confidence                                                                3455666666666666666666666666


Q ss_pred             CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      +.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++..
T Consensus       245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            666666666666666666666666666666666666555666666666666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.3e-26  Score=254.74  Aligned_cols=255  Identities=20%  Similarity=0.219  Sum_probs=206.3

Q ss_pred             CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486          398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV  477 (776)
Q Consensus       398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  477 (776)
                      ....++.++..++ .+|..+.   +++++|++++|.+++..+..|.++++|+.|+|++|.+++..+..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3456777777777 6776543   47888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486          478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE  557 (776)
Q Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~  557 (776)
                      ++|++++..+..|..+++|++|++++|++.+..+..  +..+++|+.|++++|+..+.+|...|..              
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------  194 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEG--------------  194 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhH--HhcCCcccEEeCCCCCCccccChhhccC--------------
Confidence            888888877778888888889998888887644433  3678889999998866555555543332              


Q ss_pred             cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486          558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  637 (776)
                                               ++.|+.|++++|++++. | .+..+++|+.|+|++|.+++..|..|.++++|+.|
T Consensus       195 -------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  247 (452)
T 3zyi_A          195 -------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL  247 (452)
T ss_dssp             -------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred             -------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence                                     56789999999999865 3 58899999999999999999999999999999999


Q ss_pred             eccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 047486          638 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSND  704 (776)
Q Consensus       638 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~  704 (776)
                      +|++|++++..|..|..+++|+.|+|++|++++..+..     |..........+.+||+.|+|...
T Consensus       248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL-----FTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS-----STTCTTCCEEECCSSCEECSTTTH
T ss_pred             EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH-----hccccCCCEEEccCCCcCCCCCch
Confidence            99999999999999999999999999999998544322     233333445677888999999754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.3e-26  Score=240.97  Aligned_cols=248  Identities=23%  Similarity=0.319  Sum_probs=173.1

Q ss_pred             cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchh-hhcCCCccEEECCCCcCCcc--CcccccCCCCccEEE
Q 047486          376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL-GNFSTELITLHLKNNSLEGH--IHDTFANASHLRSLD  452 (776)
Q Consensus       376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~  452 (776)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+. .+|... ..+ ++|++|++++|.++..  .+..+..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            46777777766 3444332  57788888888877 555543 344 3688888888877633  255666677888888


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccc-hhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCc
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFP-CWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE  531 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~  531 (776)
                      +++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+...  ..+++|++|++++|.
T Consensus        85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNS  161 (306)
T ss_dssp             CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCE
T ss_pred             CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCc
Confidence            8888777 355567777888888888887776654 567777788888888877776555443  556777777777777


Q ss_pred             CCC-CCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCC
Q 047486          532 FTG-FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL  610 (776)
Q Consensus       532 l~~-~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  610 (776)
                      +++ .+|.. +.                                       .++.|+.|++++|++++..|..+..+++|
T Consensus       162 l~~~~~~~~-~~---------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          162 FQENFLPDI-FT---------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             EGGGEECSC-CT---------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccchhH-Hh---------------------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            764 22322 11                                       14566777788887777777777777788


Q ss_pred             CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccc-ccccccCccCcceec
Q 047486          611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT-ALALLNLSYNRLWGR  671 (776)
Q Consensus       611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~  671 (776)
                      +.|+|++|.+++..+..+..+++|++|||++|++++..|..+..++ +|++|++++|++++.
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            8888888887776666777777788888888888777777777773 777788887777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=253.81  Aligned_cols=250  Identities=17%  Similarity=0.218  Sum_probs=215.2

Q ss_pred             CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEc
Q 047486          374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL  453 (776)
Q Consensus       374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  453 (776)
                      ....++.++..+. .+|..+.  +.++.|++++|++.+..+..+..+. +|++|++++|.++++.+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            3567888888887 5666554  6899999999999866667777665 8999999999999988899999999999999


Q ss_pred             CCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486          454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT  533 (776)
Q Consensus       454 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~  533 (776)
                      ++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|+..+.++.. .+..+++|+.|++++|.++
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc
Confidence            999999888888999999999999999999888888999999999999996655555443 2467899999999999988


Q ss_pred             CCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEE
Q 047486          534 GFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVL  613 (776)
Q Consensus       534 ~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  613 (776)
                       .+|.  +.                                       .++.|+.|+|++|++++..|..|..+++|+.|
T Consensus       199 -~~~~--~~---------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  236 (440)
T 3zyj_A          199 -EIPN--LT---------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL  236 (440)
T ss_dssp             -SCCC--CT---------------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             -cccc--cC---------------------------------------CCcccCEEECCCCccCccChhhhccCccCCEE
Confidence             3442  11                                       15678999999999999989999999999999


Q ss_pred             eCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      +|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++..
T Consensus       237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            999999999999999999999999999999998888889999999999999999865

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=249.94  Aligned_cols=247  Identities=22%  Similarity=0.222  Sum_probs=205.3

Q ss_pred             EEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCC
Q 047486          356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLE  435 (776)
Q Consensus       356 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~  435 (776)
                      .++..+..++.......+.++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+. +|++|++++|.++
T Consensus        47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~  125 (440)
T 3zyj_A           47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT  125 (440)
T ss_dssp             EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCS
T ss_pred             EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCC
Confidence            444444444433333356777888888888888888899999999999999999855556666665 7999999999999


Q ss_pred             ccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcccchhhcCCCCcCEEEccCCcccccCCCCC
Q 047486          436 GHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN  514 (776)
Q Consensus       436 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  514 (776)
                      +..+..|..+++|++|+|++|+++...+..|..+++|++|++++| .+....+..|.++++|++|++++|.+... |.  
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~--  202 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PN--  202 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CC--
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cc--
Confidence            888888999999999999999999888889999999999999985 55555555789999999999999998853 32  


Q ss_pred             CCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCC
Q 047486          515 ITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRN  594 (776)
Q Consensus       515 ~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  594 (776)
                       ...+++|+.|++++|.+++..|.. |..                                       ++.|+.|++++|
T Consensus       203 -~~~l~~L~~L~Ls~N~l~~~~~~~-~~~---------------------------------------l~~L~~L~L~~n  241 (440)
T 3zyj_A          203 -LTPLIKLDELDLSGNHLSAIRPGS-FQG---------------------------------------LMHLQKLWMIQS  241 (440)
T ss_dssp             -CTTCSSCCEEECTTSCCCEECTTT-TTT---------------------------------------CTTCCEEECTTC
T ss_pred             -cCCCcccCEEECCCCccCccChhh-hcc---------------------------------------CccCCEEECCCC
Confidence             367889999999999998655533 222                                       567899999999


Q ss_pred             cccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCC
Q 047486          595 RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGR  647 (776)
Q Consensus       595 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  647 (776)
                      ++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus       242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            99999999999999999999999999988888899999999999999999753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=9.3e-27  Score=243.57  Aligned_cols=234  Identities=23%  Similarity=0.276  Sum_probs=145.2

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD  452 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  452 (776)
                      +.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+. +|++|++++|.++ .+|..+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA-GLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGT-TCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccC-CCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            34455555555554 34444444555555555555554 4554444443 4555555555554 3344444455555555


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcC
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF  532 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l  532 (776)
                      +++|.+.+.+|..+...               ..+..+..+++|++|++++|++. .+|..  +..+++|+.|++++|.+
T Consensus       157 L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~--l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          157 IRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPAS--IANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGG--GGGCTTCCEEEEESSCC
T ss_pred             CCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHh--hcCCCCCCEEEccCCCC
Confidence            55544444444433220               00001123556666666666555 33332  24455666666666666


Q ss_pred             CCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCE
Q 047486          533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKV  612 (776)
Q Consensus       533 ~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  612 (776)
                      ++ +|..+ .                                       .++.|+.|++++|++.+.+|..++.+++|+.
T Consensus       219 ~~-l~~~l-~---------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          219 SA-LGPAI-H---------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             CC-CCGGG-G---------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             Cc-Cchhh-c---------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            63 33321 1                                       1466788888888888888888899999999


Q ss_pred             EeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcce
Q 047486          613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW  669 (776)
Q Consensus       613 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  669 (776)
                      |+|++|++.+.+|..+.++++|++|||++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus       258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            999999999899999999999999999999999999999999999999988877653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.7e-26  Score=234.78  Aligned_cols=210  Identities=20%  Similarity=0.210  Sum_probs=124.8

Q ss_pred             CccEEECCCCcCCccCcccccCCCCccEEEcCCCc-CcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEc
Q 047486          423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK-LEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVL  501 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  501 (776)
                      +|++|++++|.+++..+..|..+++|++|++++|. ++...|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence            34444444444444444444444444444444443 44333444444444444444444444444444444444555555


Q ss_pred             cCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHH
Q 047486          502 RSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQK  581 (776)
Q Consensus       502 ~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (776)
                      ++|++.+..+...  ..+++|+.|++++|.+++ +|...+..                                      
T Consensus       137 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~--------------------------------------  175 (285)
T 1ozn_A          137 QDNALQALPDDTF--RDLGNLTHLFLHGNRISS-VPERAFRG--------------------------------------  175 (285)
T ss_dssp             CSSCCCCCCTTTT--TTCTTCCEEECCSSCCCE-ECTTTTTT--------------------------------------
T ss_pred             CCCcccccCHhHh--ccCCCccEEECCCCcccc-cCHHHhcC--------------------------------------
Confidence            5444443322211  344555555555555542 22221211                                      


Q ss_pred             hhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccc
Q 047486          582 ILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALL  661 (776)
Q Consensus       582 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  661 (776)
                       ++.|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.. .-...++.+
T Consensus       176 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~  253 (285)
T 1ozn_A          176 -LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF  253 (285)
T ss_dssp             -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred             -ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence             456678888888888778888888999999999999999877777899999999999999998655432 222446667


Q ss_pred             cCccCcceecCCCC
Q 047486          662 NLSYNRLWGRIPRG  675 (776)
Q Consensus       662 ~ls~N~l~g~iP~~  675 (776)
                      ..+.+.+.+..|..
T Consensus       254 ~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          254 RGSSSEVPCSLPQR  267 (285)
T ss_dssp             CSEECCCBEEESGG
T ss_pred             ccccCccccCCchH
Confidence            78888888888864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4.9e-27  Score=249.33  Aligned_cols=282  Identities=20%  Similarity=0.256  Sum_probs=197.7

Q ss_pred             CCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCC
Q 047486          304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNN  383 (776)
Q Consensus       304 ~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n  383 (776)
                      .|+.....+.+++.++ .+|...+   ++|++|++++|.+++++...+.                  .+++|++|++++|
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~------------------~l~~L~~L~L~~n   86 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQ------------------RCVNLQALVLTSN   86 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTT------------------TCTTCCEEECTTS
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhc------------------cCCCCCEEECCCC
Confidence            4566667899999998 6777653   5899999999999987654332                  2345566666666


Q ss_pred             cCccCCCccccCCCCCCEEEccCCcCcccCCch-hhhcCCCccEEECCCCcCCccCc-ccccCCCCccEEEcCCC-cCcC
Q 047486          384 KLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPC-LGNFSTELITLHLKNNSLEGHIH-DTFANASHLRSLDLNSN-KLEG  460 (776)
Q Consensus       384 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~  460 (776)
                      .+.+..+..|.++++|++|++++|+++ .+|.. +..+. +|++|++++|.+++..+ ..|..+++|++|++++| .+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A           87 GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             ccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence            666666667777777777777777777 45544 44443 67777777777775544 46777777777777777 4565


Q ss_pred             CCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCccc
Q 047486          461 PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRI  540 (776)
Q Consensus       461 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~  540 (776)
                      ..+..+.++++|++|++++|++++..|..+..+++|++|++++|++.... .. ....+++|+.|++++|.+++..+..+
T Consensus       165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~l  242 (353)
T 2z80_A          165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL-EI-FVDVTSSVECLELRDTDLDTFHFSEL  242 (353)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH-HH-HHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred             cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch-hh-hhhhcccccEEECCCCcccccccccc
Confidence            55667777777777777777777777777777777777777777764321 11 11236677888888887775433221


Q ss_pred             ccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc----cchhhhccCCCCCEEeCC
Q 047486          541 FPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG----EIPEVLGNFKSLKVLNLS  616 (776)
Q Consensus       541 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls  616 (776)
                       ..   .                                 .....++.++++++.+++    .+|..+..+++|+.|+|+
T Consensus       243 -~~---~---------------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls  285 (353)
T 2z80_A          243 -ST---G---------------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS  285 (353)
T ss_dssp             -----------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred             -cc---c---------------------------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence             00   0                                 013445666777777665    478889999999999999


Q ss_pred             CCcCcccCCcc-ccccCCCcEEeccCccCcCCCc
Q 047486          617 HNSLTGNIPVS-FENMTALESLDLSFNKLDGRIP  649 (776)
Q Consensus       617 ~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p  649 (776)
                      +|+++. +|.. |.++++|++|+|++|++.+..|
T Consensus       286 ~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          286 RNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999994 5555 6999999999999999997654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.6e-26  Score=241.72  Aligned_cols=225  Identities=19%  Similarity=0.247  Sum_probs=141.0

Q ss_pred             CCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccC
Q 047486           31 LTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLREL  110 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L  110 (776)
                      .+++++|+|++|.+. .+|..+.++ ++|++|+|++|.+. .+|..++++++|++|++++| .+. .+|..     +.++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~-~lp~~-----l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLR-ALPAS-----IASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCC-CCCGG-----GGGC
T ss_pred             ccceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccc-cCcHH-----HhcC
Confidence            355666666666655 334455555 56666666666665 55555666666666666666 554 44544     4444


Q ss_pred             CCCcEEEccCCcccccccccccC---------CCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccC
Q 047486          111 DLLSVLDIGFCNFTGSIPTSIGN---------LTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT  181 (776)
Q Consensus       111 ~~L~~L~Ls~n~l~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  181 (776)
                      ++|++|++++|++.+.+|..++.         +++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence            44666666665555555555443         666666666666666 55666666666666666666666 34555666


Q ss_pred             CCCCCEEEccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEE
Q 047486          182 LPSLLSIDLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFL  260 (776)
Q Consensus       182 l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  260 (776)
                      +++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+| ..+..+++|+.+
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l  306 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCII  306 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEE
Confidence            66666666666666654433 3444667777777776666777777777777777777777776666 567777777777


Q ss_pred             eccCCCCC
Q 047486          261 DLSNNSLL  268 (776)
Q Consensus       261 ~Ls~n~i~  268 (776)
                      ++..+.+.
T Consensus       307 ~l~~~~~~  314 (328)
T 4fcg_A          307 LVPPHLQA  314 (328)
T ss_dssp             ECCGGGSC
T ss_pred             eCCHHHHH
Confidence            77766543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-26  Score=238.07  Aligned_cols=228  Identities=21%  Similarity=0.199  Sum_probs=202.4

Q ss_pred             CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486          400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK  479 (776)
Q Consensus       400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  479 (776)
                      ++++.+++.+. .+|..+   .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            67888888887 777654   34899999999999998888999999999999999999988899999999999999999


Q ss_pred             Cc-cCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceec
Q 047486          480 NM-ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY  558 (776)
Q Consensus       480 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~  558 (776)
                      |+ +....|..+..+++|++|++++|.+.+..+...  ..+++|++|++++|.+++. |...+..               
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~~~~---------------  151 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQAL-PDDTFRD---------------  151 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCC-CTTTTTT---------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCccccc-CHhHhcc---------------
Confidence            97 888778999999999999999999988666544  6789999999999999853 3332222               


Q ss_pred             ccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEe
Q 047486          559 MGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLD  638 (776)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  638 (776)
                                              ++.|+.|++++|++++..+..|..+++|+.|++++|.+++..|..|.++++|+.|+
T Consensus       152 ------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          152 ------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             ------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence                                    56789999999999988777899999999999999999999999999999999999


Q ss_pred             ccCccCcCCCchhhccccccccccCccCcceecCC
Q 047486          639 LSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP  673 (776)
Q Consensus       639 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  673 (776)
                      +++|++++..+..+..+++|++|++++|++.+..+
T Consensus       208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            99999998888889999999999999999987544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.1e-28  Score=254.69  Aligned_cols=249  Identities=22%  Similarity=0.234  Sum_probs=190.7

Q ss_pred             CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcC-cccCCchhh-------hcCCCccEEECCCCcCCccCcccc--c
Q 047486          374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL-SGTIPPCLG-------NFSTELITLHLKNNSLEGHIHDTF--A  443 (776)
Q Consensus       374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~~~-------~~~~~L~~L~L~~n~l~~~~~~~~--~  443 (776)
                      +|+.+++++|.+  .+|..+...  |+.|++++|.+ .+.+|..+.       .+. +|++|++++|.+++..|..+  .
T Consensus        44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHh
Confidence            345566666666  556555433  77788888877 345665554       344 78888888888887777765  7


Q ss_pred             CCCCccEEEcCCCcCcCCCChhhhcC-----CCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccC--CCCCCC
Q 047486          444 NASHLRSLDLNSNKLEGPLPRSLAKC-----IKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL--CNSNIT  516 (776)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~  516 (776)
                      .+++|++|+|++|++++. |..+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.+  +....+
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            888888888888888877 7777776     88889999888888888888888889999999988876642  223333


Q ss_pred             cCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcc
Q 047486          517 FPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRF  596 (776)
Q Consensus       517 ~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  596 (776)
                      ..+++|++|++++|.+++ ++..                                    .......++.|+.|++++|++
T Consensus       198 ~~l~~L~~L~L~~N~l~~-~~~~------------------------------------~~~~~~~l~~L~~L~Ls~N~l  240 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMET-PSGV------------------------------------CSALAAARVQLQGLDLSHNSL  240 (312)
T ss_dssp             TSCTTCCEEECTTSCCCC-HHHH------------------------------------HHHHHHTTCCCSEEECTTSCC
T ss_pred             ccCCCCCEEECCCCcCcc-hHHH------------------------------------HHHHHhcCCCCCEEECCCCcC
Confidence            568889999999998873 1110                                    001112257889999999999


Q ss_pred             cccch-hhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          597 HGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       597 ~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      ++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            98775 55777899999999999999 7787776  8999999999999976 66 8999999999999999975

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=5.8e-25  Score=247.19  Aligned_cols=269  Identities=23%  Similarity=0.264  Sum_probs=192.8

Q ss_pred             cccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcC
Q 047486          306 EELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKL  385 (776)
Q Consensus       306 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l  385 (776)
                      .+++.|++++|.++ .+|....   ++|++|++++|.++.++. .+++|++|++++|++++ +|..+++|++|++++|.+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL  113 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSCCC
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCCcC
Confidence            35889999999988 7777653   788999999998887766 67788888888888774 444778888888888888


Q ss_pred             ccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChh
Q 047486          386 SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRS  465 (776)
Q Consensus       386 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  465 (776)
                      .+. |.   .+++|+.|++++|+++ .+|..+    ++|++|++++|.+++.. .   .+++|+.|++++|.+++ +|  
T Consensus       114 ~~l-~~---~l~~L~~L~L~~N~l~-~lp~~l----~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~-l~--  177 (622)
T 3g06_A          114 THL-PA---LPSGLCKLWIFGNQLT-SLPVLP----PGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS-LP--  177 (622)
T ss_dssp             CCC-CC---CCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CC--
T ss_pred             CCC-CC---CCCCcCEEECCCCCCC-cCCCCC----CCCCEEECcCCcCCCcC-C---ccCCCCEEECCCCCCCC-Cc--
Confidence            753 33   4677888888888887 566542    47888888888887542 2   34678888888888875 34  


Q ss_pred             hhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChH
Q 047486          466 LAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSME  545 (776)
Q Consensus       466 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~  545 (776)
                       ..+++|+.|++++|++++. |.   ..++|+.|++++|.+... +.     .+++|+.|++++|.+++ +|..      
T Consensus       178 -~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~~-----~~~~L~~L~Ls~N~L~~-lp~~------  239 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSL-PA-----LPSGLKELIVSGNRLTS-LPVL------  239 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-CC-----CCTTCCEEECCSSCCSC-CCCC------
T ss_pred             -ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccccc-CC-----CCCCCCEEEccCCccCc-CCCC------
Confidence             4467788888888887753 32   246778888888877642 21     24667788888877764 4411      


Q ss_pred             HhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCC
Q 047486          546 AMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP  625 (776)
Q Consensus       546 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  625 (776)
                                                           +++|+.|++++|++++ +|.   .+++|+.|+|++|+++ .+|
T Consensus       240 -------------------------------------l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp  277 (622)
T 3g06_A          240 -------------------------------------PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLP  277 (622)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCC
T ss_pred             -------------------------------------CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCC
Confidence                                                 3456777777777773 444   5677777777777777 567


Q ss_pred             ccccccCCCcEEeccCccCcCCCchhhcccc
Q 047486          626 VSFENMTALESLDLSFNKLDGRIPEQLLSVT  656 (776)
Q Consensus       626 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  656 (776)
                      ..|.++++|+.|+|++|++++.+|..+..++
T Consensus       278 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          278 ESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             GGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             HHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            7777777777777777777777777666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=6e-25  Score=247.10  Aligned_cols=263  Identities=26%  Similarity=0.278  Sum_probs=174.8

Q ss_pred             ccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCc
Q 047486          331 KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS  410 (776)
Q Consensus       331 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  410 (776)
                      ..++.|++++|.++.++....++|+.|++++|.++. +|..+++|++|++++|++++ +|.   .+++|++|++++|.++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC
T ss_pred             CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC
Confidence            346777777777777666555677777777777763 44466777777777777763 443   5677777777777776


Q ss_pred             ccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhh
Q 047486          411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL  490 (776)
Q Consensus       411 ~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  490 (776)
                       .+|.    ..++|+.|++++|+++++..    .+++|++|++++|++++. |.   .+.+|+.|++++|++++. |   
T Consensus       115 -~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~---  177 (622)
T 3g06_A          115 -HLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-P---  177 (622)
T ss_dssp             -CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---
T ss_pred             -CCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-c---
Confidence             4554    22367777777777775332    236777777777777743 32   245677777777777653 3   


Q ss_pred             cCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEE
Q 047486          491 GSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITV  570 (776)
Q Consensus       491 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~  570 (776)
                      ..+++|+.|++++|.+.+ ++.     ..++|+.|++++|.++ .+|..                               
T Consensus       178 ~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~-~l~~~-------------------------------  219 (622)
T 3g06_A          178 MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLT-SLPAL-------------------------------  219 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCS-SCCCC-------------------------------
T ss_pred             ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCccc-ccCCC-------------------------------
Confidence            445777777777777765 221     2356777777777776 23321                               


Q ss_pred             EeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch
Q 047486          571 AMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE  650 (776)
Q Consensus       571 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  650 (776)
                                  +++|+.|++++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|+|++|+++ .+|.
T Consensus       220 ------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~  278 (622)
T 3g06_A          220 ------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE  278 (622)
T ss_dssp             ------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred             ------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence                        2456777777777775 44   45567777777777777 4454   4567777777777777 5677


Q ss_pred             hhccccccccccCccCcceecCCC
Q 047486          651 QLLSVTALALLNLSYNRLWGRIPR  674 (776)
Q Consensus       651 ~l~~l~~L~~L~ls~N~l~g~iP~  674 (776)
                      .+..+++|+.|++++|+++|.+|.
T Consensus       279 ~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             HHhhccccCEEEecCCCCCCcCHH
Confidence            777777777777777777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=240.54  Aligned_cols=264  Identities=16%  Similarity=0.137  Sum_probs=194.9

Q ss_pred             CCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEE
Q 047486            7 LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQIL   86 (776)
Q Consensus         7 L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L   86 (776)
                      ++..+++.+.+.   ......+..+++|++|++++|.+.+..|..+..+ ++|++|+|++|.+++..+  +..+++|++|
T Consensus        12 l~i~~ls~~~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           12 YKIEKVTDSSLK---QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEESCCTTTHH---HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             eeEeeccccchh---hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            455566666554   3344566778899999999999999988899999 999999999999986654  8899999999


Q ss_pred             eccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEc
Q 047486           87 FLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDL  166 (776)
Q Consensus        87 ~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  166 (776)
                      ++++| .+.+.          ...+.|++|++++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++
T Consensus        86 ~Ls~n-~l~~l----------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           86 DLNNN-YVQEL----------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             ECCSS-EEEEE----------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             ECcCC-ccccc----------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            99999 76642          2234499999999999865544   3678999999999999877878889999999999


Q ss_pred             cCCcCCCCCCcccc-CCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccc
Q 047486          167 SGNYFQGGVPSWLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA  245 (776)
Q Consensus       167 ~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~  245 (776)
                      ++|.+++..+..+. .+++|++|++++|.+++..+... +++|++|++++|.+++ +|..+..+++|++|++++|.+. .
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~  228 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-L  228 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-E
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-c
Confidence            99999877676664 68889999999888876533323 3677777777777763 3444666677777777777666 4


Q ss_pred             cCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccC-cccc
Q 047486          246 IRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN-RIQG  320 (776)
Q Consensus       246 i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n-~l~~  320 (776)
                      ++ ..+..+++|++|++++|++..   .                       .+|.++..+++|+.++++++ .+.+
T Consensus       229 l~-~~~~~l~~L~~L~l~~N~~~~---~-----------------------~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          229 IE-KALRFSQNLEHFDLRGNGFHC---G-----------------------TLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             EC-TTCCCCTTCCEEECTTCCCBH---H-----------------------HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             hh-hHhhcCCCCCEEEccCCCccC---c-----------------------CHHHHHhccccceEEECCCchhccC
Confidence            44 345556666666666665321   0                       35677888888888888844 3443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=241.64  Aligned_cols=219  Identities=20%  Similarity=0.191  Sum_probs=149.2

Q ss_pred             CcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcC
Q 047486          375 TKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLN  454 (776)
Q Consensus       375 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  454 (776)
                      |++|++++|.+.+..+  +..+++|++|++++|.++ .++..     ++|++|++++|.+++..+..   +++|++|+++
T Consensus        60 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~~-----~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~  128 (317)
T 3o53_A           60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNISRVSCSR---GQGKKNIYLA  128 (317)
T ss_dssp             CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEEC-----TTCCEEECCSSCCSEEEECC---CSSCEEEECC
T ss_pred             CCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccCC-----CCcCEEECCCCccCCcCccc---cCCCCEEECC
Confidence            3444444444443332  566667777777777666 33321     35777777777776554433   4567777777


Q ss_pred             CCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc-CCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486          455 SNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG-SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT  533 (776)
Q Consensus       455 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~  533 (776)
                      +|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.+.+....    ..               
T Consensus       129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~---------------  189 (317)
T 3o53_A          129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----VV---------------  189 (317)
T ss_dssp             SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----CC---------------
T ss_pred             CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----cc---------------
Confidence            7777766666666677777777777777666555543 455666666655555432100    01               


Q ss_pred             CCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEE
Q 047486          534 GFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVL  613 (776)
Q Consensus       534 ~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  613 (776)
                                                                       ++.|+.|++++|++++. |..+..+++|+.|
T Consensus       190 -------------------------------------------------l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L  219 (317)
T 3o53_A          190 -------------------------------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWI  219 (317)
T ss_dssp             -------------------------------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCSEE
T ss_pred             -------------------------------------------------cccCCEEECCCCcCCcc-hhhhcccCcccEE
Confidence                                                             34567777777777754 4458889999999


Q ss_pred             eCCCCcCcccCCccccccCCCcEEeccCccCc-CCCchhhccccccccccCccC-cceecCCC
Q 047486          614 NLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTALALLNLSYN-RLWGRIPR  674 (776)
Q Consensus       614 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~N-~l~g~iP~  674 (776)
                      +|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++| .+.|..|.
T Consensus       220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            99999999 57888999999999999999999 788899999999999999955 67776554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2e-28  Score=279.91  Aligned_cols=443  Identities=14%  Similarity=0.073  Sum_probs=228.0

Q ss_pred             EEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCC---C------------hhhHhhccCCccEEEcCCCCCCccC
Q 047486            9 HLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLI---K------------PFSLLNLSSTMTDLDLGGTRIKGNF   73 (776)
Q Consensus         9 ~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---~------------~~~~~~l~~~L~~L~Ls~~~l~~~~   73 (776)
                      .++++++..    ......+.++++|++|+++++.....   .            +.....+ ++|++|+|++|.+++..
T Consensus        47 ~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~  121 (594)
T 2p1m_B           47 KVFIGNCYA----VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDC  121 (594)
T ss_dssp             EEEESSTTS----SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHH
T ss_pred             EEeeccccc----cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHH
Confidence            455554432    22234566777888888877642110   0            1112345 67788888877776655


Q ss_pred             CCCCC-CCCCCCEEeccCCCCcccc-CCCCCCCCCcccCCCCcEEEccCCccccccccccc----CCCCCCEEEccCCc-
Q 047486           74 PDDIF-RLPNLQILFLNLNSQLTGY-LPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG----NLTRATEIAFASNH-  146 (776)
Q Consensus        74 ~~~l~-~l~~L~~L~Ls~n~~~~~~-~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~----~l~~L~~L~L~~n~-  146 (776)
                      +..+. .+++|++|++++|..+.+. ++..     +..+++|++|++++|.+++..+..+.    .+++|++|++++|. 
T Consensus       122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~  196 (594)
T 2p1m_B          122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAI-----AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS  196 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCEEEEHHHHHHH-----HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCS
T ss_pred             HHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-----HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCC
Confidence            54454 5677788887777323221 2211     23455577777777776654443333    56677777777775 


Q ss_pred             -ccCC-CchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcC-------CCcCCCCCCCCCCcEE-EccCC
Q 047486          147 -FTGQ-LPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNML-------NGPIDLFQLPNSLQDV-RLEEN  216 (776)
Q Consensus       147 -l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-------~~~~~~~~~~~~L~~L-~L~~n  216 (776)
                       +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+..       .+..+.+..+++|+.| .+.+.
T Consensus       197 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~  276 (594)
T 2p1m_B          197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA  276 (594)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC
T ss_pred             cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc
Confidence             2111 112224567777777777732223566667777777777665431       1111111222444444 12111


Q ss_pred             cCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCC
Q 047486          217 EIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT  296 (776)
Q Consensus       217 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~  296 (776)
                      .. +.++..+..+++|++|++++|.+.+......+..+++|++|++++| +.   ..                       
T Consensus       277 ~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~-----------------------  328 (594)
T 2p1m_B          277 VP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE---DA-----------------------  328 (594)
T ss_dssp             CG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---HH-----------------------
T ss_pred             ch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC---HH-----------------------
Confidence            11 1222222334445555555544432211122334444444444443 11   00                       


Q ss_pred             CcchhhhCCcccceEeccc---------CccccccCCCcccCCccCCeEeCcCccccccccc----cccccCEEeccCcc
Q 047486          297 EFPGFLRNSEELYLLDLSN---------NRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH----PWMNITTLDLRNNR  363 (776)
Q Consensus       297 ~lp~~l~~~~~L~~L~L~~---------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~  363 (776)
                      .++.....+++|+.|++++         +.+++........++++|+.|.+..+.++.....    .+++|+.|+++.+.
T Consensus       329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            1112222345555555522         2232221111112355566665555555443321    23344444444110


Q ss_pred             cCCCCCCCCCCCcEEEccCCcCcc-----CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccC
Q 047486          364 IQGSILVPPPSTKVLLVSNNKLSG-----KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHI  438 (776)
Q Consensus       364 l~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~  438 (776)
                      ..+               .+.++.     .++..+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..
T Consensus       409 ~~~---------------~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~  472 (594)
T 2p1m_B          409 PKA---------------PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG  472 (594)
T ss_dssp             TTC---------------CCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred             CCC---------------cccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence            000               011211     1122255677888888876 5655555555553447888888888876554


Q ss_pred             cccc-cCCCCccEEEcCCCcCcCCCCh-hhhcCCCCcEEEcCCCccCcccchhh-cCCCCcCEEEccCCc
Q 047486          439 HDTF-ANASHLRSLDLNSNKLEGPLPR-SLAKCIKLEVVNVGKNMISDSFPCWL-GSLHELKILVLRSNR  505 (776)
Q Consensus       439 ~~~~-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~  505 (776)
                      ...+ ..+++|+.|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            4444 5678888888888888544333 34457888888888888865444444 467777776666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=8.6e-26  Score=235.00  Aligned_cols=160  Identities=18%  Similarity=0.193  Sum_probs=107.9

Q ss_pred             CCCCcEEEccCCcCccCCCccc--cCCCCCCEEEccCCcCcccCCchhhhcC----CCccEEECCCCcCCccCcccccCC
Q 047486          372 PPSTKVLLVSNNKLSGKIPPSI--CSLSSLQYLSLSDNNLSGTIPPCLGNFS----TELITLHLKNNSLEGHIHDTFANA  445 (776)
Q Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~l  445 (776)
                      +++|++|++++|.+.+.+|..+  ..+++|++|++++|++++. |..+....    ++|++|++++|++++..+..|..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4567777777777777777765  7788888888888888855 77666651    378888888888887777888888


Q ss_pred             CCccEEEcCCCcCcCC--CChhh--hcCCCCcEEEcCCCccCcc---cchhhcCCCCcCEEEccCCcccccCCCCCCCcC
Q 047486          446 SHLRSLDLNSNKLEGP--LPRSL--AKCIKLEVVNVGKNMISDS---FPCWLGSLHELKILVLRSNRFYGPLCNSNITFP  518 (776)
Q Consensus       446 ~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  518 (776)
                      ++|++|++++|++.+.  .+..+  ..+++|++|++++|++++.   ....+..+++|++|++++|++.+..+... ...
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~  251 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDW  251 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhh
Confidence            8888888888887654  23333  6778888888888887732   22334566777777777776665443221 122


Q ss_pred             CCCccEEeCCCCcCC
Q 047486          519 FQALRIIDLSHNEFT  533 (776)
Q Consensus       519 l~~L~~LdLs~n~l~  533 (776)
                      +++|++|++++|.++
T Consensus       252 l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CTTCCEEECTTSCCS
T ss_pred             cCCCCEEECCCCccC
Confidence            344555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.4e-25  Score=247.58  Aligned_cols=237  Identities=19%  Similarity=0.192  Sum_probs=168.2

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD  452 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  452 (776)
                      ++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+. +|++|++++|.+++..+     .++|+.|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            456666666666666666677777777777777777764443  44443 67777777777765432     26777777


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcC
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF  532 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l  532 (776)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+.+..+... ...+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence            777777765543   34667777777777777777777777777777777777776555433 12466777777777777


Q ss_pred             CCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCE
Q 047486          533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKV  612 (776)
Q Consensus       533 ~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  612 (776)
                      ++. |...                                         .++.|+.|+|++|.+++..| .+..+++|+.
T Consensus       182 ~~~-~~~~-----------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~  218 (487)
T 3oja_A          182 YDV-KGQV-----------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW  218 (487)
T ss_dssp             CEE-ECCC-----------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred             ccc-cccc-----------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCccE
Confidence            643 1110                                         04677888888888886544 4888999999


Q ss_pred             EeCCCCcCcccCCccccccCCCcEEeccCccCc-CCCchhhccccccccccCcc
Q 047486          613 LNLSHNSLTGNIPVSFENMTALESLDLSFNKLD-GRIPEQLLSVTALALLNLSY  665 (776)
Q Consensus       613 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~  665 (776)
                      |+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++.
T Consensus       219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~  271 (487)
T 3oja_A          219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (487)
T ss_dssp             EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred             EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence            9999999985 6778888999999999999998 67778888888888888763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.3e-24  Score=239.95  Aligned_cols=246  Identities=17%  Similarity=0.150  Sum_probs=189.3

Q ss_pred             CChhHhhcCCC----CCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCcccc
Q 047486           22 RTFDLLASNLT----KLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGY   97 (776)
Q Consensus        22 ~~~~~~l~~l~----~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~   97 (776)
                      ..+|..+..+.    +|++|+|++|.+.+..|..+..+ ++|++|+|++|.+++..|  +..+++|++|++++| .+.+.
T Consensus        20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l   95 (487)
T 3oja_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQEL   95 (487)
T ss_dssp             TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEE
T ss_pred             hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCC
Confidence            45666665554    89999999999999888889999 899999999999987665  889999999999999 77653


Q ss_pred             CCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCc
Q 047486           98 LPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS  177 (776)
Q Consensus        98 ~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  177 (776)
                      .          ..++|++|++++|.+++..+.   .+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|.
T Consensus        96 ~----------~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A           96 L----------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             E----------ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred             C----------CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence            2          224499999999999876554   457899999999999988888899999999999999999987887


Q ss_pred             ccc-CCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCC
Q 047486          178 WLF-TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKK  256 (776)
Q Consensus       178 ~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~  256 (776)
                      .+. .+++|++|++++|.+++..+... +++|++|++++|.+++ +|..+..+++|+.|++++|.+. .+| ..+..+++
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~l~~l~~  238 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIE-KALRFSQN  238 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EEC-TTCCCCTT
T ss_pred             HHhhhCCcccEEecCCCcccccccccc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccc-hhhccCCC
Confidence            776 78999999999998887644333 4777777777777774 4444777777777777777776 344 34566666


Q ss_pred             CCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecc
Q 047486          257 LQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLS  314 (776)
Q Consensus       257 L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~  314 (776)
                      |+.|++++|++..   .                       .+|.++..++.|+.++++
T Consensus       239 L~~L~l~~N~l~c---~-----------------------~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          239 LEHFDLRGNGFHC---G-----------------------TLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEEECTTCCBCH---H-----------------------HHHHHHTTCHHHHHHHHH
T ss_pred             CCEEEcCCCCCcC---c-----------------------chHHHHHhCCCCcEEecc
Confidence            6666666666321   0                       246667777777777775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=5.8e-24  Score=217.27  Aligned_cols=226  Identities=21%  Similarity=0.197  Sum_probs=164.5

Q ss_pred             EEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCc
Q 047486          402 LSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM  481 (776)
Q Consensus       402 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  481 (776)
                      ++-.+..+. .+|..+   +++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            344444454 555543   2357777777777777666677777777777777777776666677777777777777777


Q ss_pred             cCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCC-CCcccccChHHhhhccccCceeccc
Q 047486          482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGF-LPRRIFPSMEAMKNVDEQGRLEYMG  560 (776)
Q Consensus       482 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~  560 (776)
                      +++..+..+..+++|++|++++|++.+..+..  +..+++|++|++++|.+++. +|..+ .                  
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~-~------------------  146 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF-S------------------  146 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGG-G------------------
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchh--cccCCCCCEEECcCCccceecCchhh-c------------------
Confidence            77777777777777778877777776654433  25677788888888887652 34321 1                  


Q ss_pred             CccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCC----EEeCCCCcCcccCCccccccCCCcE
Q 047486          561 GAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK----VLNLSHNSLTGNIPVSFENMTALES  636 (776)
Q Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~  636 (776)
                                           .++.|+.|++++|++++..+..+..+++|+    .|++++|.+++..+..+.. .+|+.
T Consensus       147 ---------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~  204 (276)
T 2z62_A          147 ---------------------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKE  204 (276)
T ss_dssp             ---------------------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEE
T ss_pred             ---------------------cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccE
Confidence                                 156778888888888887777777777776    8999999998666655544 47999


Q ss_pred             EeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486          637 LDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  674 (776)
Q Consensus       637 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  674 (776)
                      |+|++|++++..+..|..+++|+.|++++|++.+..|.
T Consensus       205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             EECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred             EECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence            99999999877777788899999999999998876653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=8.1e-27  Score=266.60  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             hcceeEEecCCCcccccchhhhcc-CCCCCEEeCCCCcCcccCCccc-cccCCCcEEeccCccCcCCCch-hhccccccc
Q 047486          583 LVMFRAMDFSRNRFHGEIPEVLGN-FKSLKVLNLSHNSLTGNIPVSF-ENMTALESLDLSFNKLDGRIPE-QLLSVTALA  659 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~  659 (776)
                      ++.|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++..+. ....+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            45566666655 555544444444 5666666666666655444333 4456666666666666433332 223356666


Q ss_pred             cccCccCcc
Q 047486          660 LLNLSYNRL  668 (776)
Q Consensus       660 ~L~ls~N~l  668 (776)
                      +|++++|++
T Consensus       510 ~L~l~~~~~  518 (594)
T 2p1m_B          510 SLWMSSCSV  518 (594)
T ss_dssp             EEEEESSCC
T ss_pred             EEeeeCCCC
Confidence            666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=7.6e-23  Score=208.96  Aligned_cols=204  Identities=25%  Similarity=0.253  Sum_probs=114.9

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD  111 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~  111 (776)
                      ++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+.++++|++|++++| .+.+..+..     +.+++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA-----FSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTT-----TTTCT
T ss_pred             CCccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhh-----hcCCc
Confidence            356666666666666555556666 66666666666666555556666666666666666 555444433     34444


Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCC-CchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCC----
Q 047486          112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLL----  186 (776)
Q Consensus       112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----  186 (776)
                      +|++|++++|.+++..+..++.+++|++|++++|.+++. +|..|.++++|++|++++|.+++..+..+..+++|+    
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            466666666666655444566666666666666666542 355666666666666666666655455554444444    


Q ss_pred             EEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCC
Q 047486          187 SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS  266 (776)
Q Consensus       187 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  266 (776)
                      +|++++|.+.+..+                        ......+|++|++++|.++ .++...|..+++|++|++++|+
T Consensus       181 ~L~ls~n~l~~~~~------------------------~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          181 SLDLSLNPMNFIQP------------------------GAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EEECCSSCCCEECT------------------------TSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred             eeecCCCcccccCc------------------------cccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence            45555555443222                        2222335555555555555 3343445555666666666665


Q ss_pred             C
Q 047486          267 L  267 (776)
Q Consensus       267 i  267 (776)
                      +
T Consensus       236 ~  236 (276)
T 2z62_A          236 W  236 (276)
T ss_dssp             B
T ss_pred             c
Confidence            3

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.5e-22  Score=205.85  Aligned_cols=203  Identities=24%  Similarity=0.228  Sum_probs=137.0

Q ss_pred             CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486          398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV  477 (776)
Q Consensus       398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  477 (776)
                      ..+.++++++.++ .+|..+.   +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4677888888877 6776443   36888888888888777777888888888888888888666667777888888888


Q ss_pred             CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486          478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE  557 (776)
Q Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~  557 (776)
                      ++|++++..+..|..+++|++|++++|++.+..+..+  ..+++|                                   
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L-----------------------------------  135 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKL-----------------------------------  135 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTC-----------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCC-----------------------------------
Confidence            8888877666667777777777777776655333221  334444                                   


Q ss_pred             cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486          558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  637 (776)
                                                   +.|++++|.+++..+..|+.+++|+.|+|++|.+++..+..|.++++|++|
T Consensus       136 -----------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          136 -----------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL  186 (270)
T ss_dssp             -----------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -----------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence                                         445555555554444445666666666666666665555556666666666


Q ss_pred             eccCccCcCCCchhhccccccccccCccCccee
Q 047486          638 DLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       638 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      +|++|++++..+..+..+++|+.|++++|++.+
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            666666665555556666666666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=8.1e-24  Score=225.04  Aligned_cols=258  Identities=17%  Similarity=0.177  Sum_probs=158.7

Q ss_pred             EEccCCcCccCCCccccCCCCCCEEEccCCcCcccCC----chhhhcCCCccEEECCCCcCCccCcccccCC-----CCc
Q 047486          378 LLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIP----PCLGNFSTELITLHLKNNSLEGHIHDTFANA-----SHL  448 (776)
Q Consensus       378 L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L  448 (776)
                      +.++.|.+++.+|..+...++|++|++++|.+++..+    ..+...+.+|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666666666555567777777777764433    3444443257777777777766655555543     677


Q ss_pred             cEEEcCCCcCcCCCChhh----hcC-CCCcEEEcCCCccCcccchhhc----C-CCCcCEEEccCCcccccCCCCCC--C
Q 047486          449 RSLDLNSNKLEGPLPRSL----AKC-IKLEVVNVGKNMISDSFPCWLG----S-LHELKILVLRSNRFYGPLCNSNI--T  516 (776)
Q Consensus       449 ~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~--~  516 (776)
                      ++|+|++|.+++..+..+    ..+ ++|++|++++|++++..+..+.    . .++|++|++++|.+.+..+....  .
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            777777777776555533    333 6777777777777666554433    2 35777777777776642221110  0


Q ss_pred             cCC-CCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhh-cceeEEecCCC
Q 047486          517 FPF-QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL-VMFRAMDFSRN  594 (776)
Q Consensus       517 ~~l-~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n  594 (776)
                      ... ++|+.|++++|.+++..+..+...                                    .... +.|+.|||++|
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------------------------------l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKF------------------------------------LASIPASVTSLDLSAN  206 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------------------HHTSCTTCCEEECTTS
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHH------------------------------------HHhCCCCCCEEECCCC
Confidence            122 367777887777765433221100                                    0112 46788888888


Q ss_pred             ccccc----chhhhcc-CCCCCEEeCCCCcCcccCC----ccccccCCCcEEeccCccCcCCCch-------hhcccccc
Q 047486          595 RFHGE----IPEVLGN-FKSLKVLNLSHNSLTGNIP----VSFENMTALESLDLSFNKLDGRIPE-------QLLSVTAL  658 (776)
Q Consensus       595 ~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L  658 (776)
                      .+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|+|++|.+.+..+.       .+..+++|
T Consensus       207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L  286 (362)
T 3goz_A          207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI  286 (362)
T ss_dssp             CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred             CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence            88763    4455555 3578888888888876544    3345667888888888885544333       55667778


Q ss_pred             ccccCccCcceec
Q 047486          659 ALLNLSYNRLWGR  671 (776)
Q Consensus       659 ~~L~ls~N~l~g~  671 (776)
                      +.||+++|++.+.
T Consensus       287 ~~LdL~~N~l~~~  299 (362)
T 3goz_A          287 ILVDKNGKEIHPS  299 (362)
T ss_dssp             EEECTTSCBCCGG
T ss_pred             EEEecCCCcCCCc
Confidence            8888888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.4e-22  Score=204.48  Aligned_cols=201  Identities=23%  Similarity=0.236  Sum_probs=117.3

Q ss_pred             cCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcc
Q 047486           29 SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR  108 (776)
Q Consensus        29 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~  108 (776)
                      ..+++|+.|++++|.+...  ..+..+ ++|++|++++|.+.+ + ..+..+++|++|++++| .+.+..+..     +.
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l-~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n-~l~~~~~~~-----~~  106 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYL-PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGN-QLQSLPNGV-----FD  106 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTS-CCCCCCTTT-----TT
T ss_pred             ccccceeeeeeCCCCcccc--cccccC-CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCC-ccCccChhH-----hc
Confidence            4456666666666665543  235555 666666666666653 2 34556666666666666 555433333     33


Q ss_pred             cCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 047486          109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSI  188 (776)
Q Consensus       109 ~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  188 (776)
                      .+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            44446666666666665555556666666666666666665555555666666666666666665555555666666666


Q ss_pred             EccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccC
Q 047486          189 DLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIR  247 (776)
Q Consensus       189 ~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~  247 (776)
                      ++++|.+++..+. +..+++|++|++++|.+.+       .+++|+.|+++.|.+.|.+|
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence            6666666654432 3344666666666665543       23456666666666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.4e-22  Score=203.35  Aligned_cols=204  Identities=20%  Similarity=0.280  Sum_probs=134.6

Q ss_pred             cCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCc
Q 047486          394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLE  473 (776)
Q Consensus       394 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  473 (776)
                      ..+++|+.|++++|.+. .++ .+..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQ-GIQYLP-NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcc-ccc-ccccCC-CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34456666666666554 333 233333 566666666655542  2455555555555555555555555555555555


Q ss_pred             EEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhcccc
Q 047486          474 VVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQ  553 (776)
Q Consensus       474 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~  553 (776)
                      +|++++|++++..+..+..+++                          |++|++++|.+++. |...+..          
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~--------------------------L~~L~L~~n~l~~~-~~~~~~~----------  155 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTN--------------------------LTYLNLAHNQLQSL-PKGVFDK----------  155 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTT--------------------------CCEEECCSSCCCCC-CTTTTTT----------
T ss_pred             EEECCCCcCCccCHHHhccCCC--------------------------CCEEECCCCccCcc-CHHHhcc----------
Confidence            5555555555544444444444                          45555555554422 2221211          


Q ss_pred             CceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCC
Q 047486          554 GRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTA  633 (776)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  633 (776)
                                                   ++.|+.|++++|++++..+..++.+++|+.|++++|++++..|..|..+++
T Consensus       156 -----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          156 -----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence                                         456677888888888777777899999999999999999988888999999


Q ss_pred             CcEEeccCccCcCCCchhhccccccccccCccCcceecCCCC
Q 047486          634 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRG  675 (776)
Q Consensus       634 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  675 (776)
                      |+.|++++|++.+..       +.|+.+++++|.++|.+|..
T Consensus       207 L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          207 LQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             CCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            999999999998654       46889999999999999975

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2.4e-23  Score=216.41  Aligned_cols=230  Identities=20%  Similarity=0.180  Sum_probs=176.7

Q ss_pred             CCCCEEEccCCcCccc----CCchhhhcCCCccEEECCCCcCCccCcccc--cCCCCccEEEcCCCcCcCCCC----hhh
Q 047486          397 SSLQYLSLSDNNLSGT----IPPCLGNFSTELITLHLKNNSLEGHIHDTF--ANASHLRSLDLNSNKLEGPLP----RSL  466 (776)
Q Consensus       397 ~~L~~L~Ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l  466 (776)
                      ..++.+.+.++.+...    ++.. .... +|++|++++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~-~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRV-LAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHH-HHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHh-cccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3466677776665421    1111 2233 58899999998888888877  888899999999999887655    345


Q ss_pred             hcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccccc--CCCCCCCcCCCCccEEeCCCCcCCCCCCcccccCh
Q 047486          467 AKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP--LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSM  544 (776)
Q Consensus       467 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l  544 (776)
                      ..+++|++|++++|++.+..+..+..+++|++|++++|++.+.  ++.......+++|++|++++|.++. +|...    
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~----  216 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC----  216 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH----
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH----
Confidence            6788999999999999888888899999999999999987653  2223333568899999999999862 22110    


Q ss_pred             HHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccC---CCCCEEeCCCCcCc
Q 047486          545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNF---KSLKVLNLSHNSLT  621 (776)
Q Consensus       545 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~  621 (776)
                                                      ......++.|+.|||++|++++.+|..+..+   ++|++|+|++|+++
T Consensus       217 --------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          217 --------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             --------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             --------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence                                            0011236789999999999999888888877   69999999999999


Q ss_pred             ccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          622 GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       622 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                       .+|..+.  ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             6787775  8999999999999964 43 6788999999999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=4.6e-21  Score=194.80  Aligned_cols=199  Identities=21%  Similarity=0.259  Sum_probs=106.0

Q ss_pred             ccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCC
Q 047486           59 MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRAT  138 (776)
Q Consensus        59 L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  138 (776)
                      .++++++++.++ .+|..+.  ++|++|++++| .+.+..+..     +.++++|++|++++|.++...+..|.++++|+
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSN-KLSSLPSKA-----FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSS-CCSCCCTTS-----SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCC-CCCeeCHHH-----hcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            444555554444 3343332  34455555544 443322222     33333355555555555433333445555555


Q ss_pred             EEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCC-CCCCCCCcEEEccCCc
Q 047486          139 EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDL-FQLPNSLQDVRLEENE  217 (776)
Q Consensus       139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~  217 (776)
                      +|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            555555555544444455555555555555555554445555555555555555555543322 2333555555555555


Q ss_pred             CCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCC
Q 047486          218 IRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL  267 (776)
Q Consensus       218 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i  267 (776)
                      +++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence            55555555667777777777777776 45555667777777777777763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=3.7e-21  Score=197.13  Aligned_cols=203  Identities=23%  Similarity=0.178  Sum_probs=104.8

Q ss_pred             CCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhc
Q 047486           77 IFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVS  156 (776)
Q Consensus        77 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~  156 (776)
                      +.+++++++++++++ .++ .+|..+. +      .+++|++++|.+++..+..|..+++|++|++++|.+++..+  .+
T Consensus         6 ~~~l~~l~~l~~~~~-~l~-~ip~~~~-~------~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~   74 (290)
T 1p9a_G            6 VSKVASHLEVNCDKR-NLT-ALPPDLP-K------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DG   74 (290)
T ss_dssp             EECSTTCCEEECTTS-CCS-SCCSCCC-T------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CS
T ss_pred             ccccCCccEEECCCC-CCC-cCCCCCC-C------CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CC
Confidence            345566666666666 554 3443321 1      26666666666665555666666666666666666654322  25


Q ss_pred             CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEE
Q 047486          157 GLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD  236 (776)
Q Consensus       157 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  236 (776)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.+++.                       .+..|..+++|++|+
T Consensus        75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-----------------------~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-----------------------PLGALRGLGELQELY  130 (290)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-----------------------CSSTTTTCTTCCEEE
T ss_pred             CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc-----------------------CHHHHcCCCCCCEEE
Confidence            5666666666666665 4455555555555555555555543                       333444444444444


Q ss_pred             CCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccC
Q 047486          237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN  316 (776)
Q Consensus       237 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n  316 (776)
                      +++|++. .++...|..+++|++|++++|+++.++...    +..+++|++|++++|.++.+|..+...++|+.+++++|
T Consensus       131 L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             CCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHH----hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            4444444 333334444444444444444444333211    22344444444444444445544444455555555555


Q ss_pred             ccc
Q 047486          317 RIQ  319 (776)
Q Consensus       317 ~l~  319 (776)
                      .+.
T Consensus       206 p~~  208 (290)
T 1p9a_G          206 PWL  208 (290)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=4.4e-21  Score=196.52  Aligned_cols=202  Identities=23%  Similarity=0.215  Sum_probs=134.4

Q ss_pred             hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486           28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL  107 (776)
Q Consensus        28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l  107 (776)
                      +++++++++++++++.++.. |..+   ++++++|+|++|.+++..+..+.++++|++|++++| .+++..+       .
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~   73 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-------D   73 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-------C
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-------C
Confidence            34556666666666666544 3222   256666666666666555566666666666666666 5553222       1


Q ss_pred             ccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486          108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS  187 (776)
Q Consensus       108 ~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  187 (776)
                      ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            23344777777777766 55666677777777777777777666666777777777777777777666666677777777


Q ss_pred             EEccCCcCCCcCCC-CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486          188 IDLSKNMLNGPIDL-FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS  243 (776)
Q Consensus       188 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  243 (776)
                      |++++|+++...+. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            77777777664432 344477777777777777 67778888889999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4.4e-22  Score=198.53  Aligned_cols=203  Identities=18%  Similarity=0.188  Sum_probs=139.3

Q ss_pred             cCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCc-CcCCCChhhhcCCCCcEEEcCC-CccCcccchh
Q 047486          412 TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK-LEGPLPRSLAKCIKLEVVNVGK-NMISDSFPCW  489 (776)
Q Consensus       412 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~  489 (776)
                      .+|. +   +.++++|++++|+++++.+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+.+
T Consensus        25 ~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            6665 2   2368888888888887777788888888888888886 7766667888888888888887 8888777778


Q ss_pred             hcCCCCcCEEEccCCcccccCCCCCCCcCCCCcc---EEeCCCC-cCCCCCCcccccChHHhhhccccCceecccCcccc
Q 047486          490 LGSLHELKILVLRSNRFYGPLCNSNITFPFQALR---IIDLSHN-EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD  565 (776)
Q Consensus       490 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~---~LdLs~n-~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~  565 (776)
                      |..+++|++|++++|++.+ +|.   +..+++|+   .|++++| .+++ +|...|..                      
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~----------------------  153 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTS-IPVNAFQG----------------------  153 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTT----------------------
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc---cccccccccccEEECCCCcchhh-cCcccccc----------------------
Confidence            8888888888888888776 333   24455555   7777777 6653 33222221                      


Q ss_pred             ceEEEEeccchhhHHHhhccee-EEecCCCcccccchhhhccCCCCCEEeCCCCc-CcccCCcccccc-CCCcEEeccCc
Q 047486          566 ESITVAMQGHDFQLQKILVMFR-AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNS-LTGNIPVSFENM-TALESLDLSFN  642 (776)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N  642 (776)
                                       ++.|+ .|++++|+++...+..+.. ++|+.|++++|+ +++..+..|.++ ++|+.||+++|
T Consensus       154 -----------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          154 -----------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             -----------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             -----------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                             45566 7777777776333333444 677777777774 776666667777 77777777777


Q ss_pred             cCcCCCchhhccccccccccCccC
Q 047486          643 KLDGRIPEQLLSVTALALLNLSYN  666 (776)
Q Consensus       643 ~l~~~~p~~l~~l~~L~~L~ls~N  666 (776)
                      ++++..+.   .+++|+.|+++++
T Consensus       216 ~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          216 SVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCT---TCTTCSEEECTTC
T ss_pred             ccccCChh---HhccCceeeccCc
Confidence            77643333   4455666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=5.8e-23  Score=218.41  Aligned_cols=262  Identities=18%  Similarity=0.152  Sum_probs=187.4

Q ss_pred             EeccCcccCCCCCC---CCCCCcEEEccCCcCccCCC----ccccCCC-CCCEEEccCCcCcccCCchhhhc----CCCc
Q 047486          357 LDLRNNRIQGSILV---PPPSTKVLLVSNNKLSGKIP----PSICSLS-SLQYLSLSDNNLSGTIPPCLGNF----STEL  424 (776)
Q Consensus       357 L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~p~~~~~~----~~~L  424 (776)
                      ++++.|.+++.++.   ...+|++|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+...    .++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            34555555554332   24558888888888887666    6777888 89999999999987666666654    2479


Q ss_pred             cEEECCCCcCCccCccc----ccCC-CCccEEEcCCCcCcCCCChhhhc-----CCCCcEEEcCCCccCccc----chhh
Q 047486          425 ITLHLKNNSLEGHIHDT----FANA-SHLRSLDLNSNKLEGPLPRSLAK-----CIKLEVVNVGKNMISDSF----PCWL  490 (776)
Q Consensus       425 ~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~----~~~~  490 (776)
                      ++|++++|.+++..+..    +..+ ++|++|+|++|++++..+..+..     +++|++|++++|++++..    +..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            99999999998776664    4444 88999999999998776655443     468999999999998644    4445


Q ss_pred             cCCC-CcCEEEccCCcccccCCCCCC--CcCC-CCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccc
Q 047486          491 GSLH-ELKILVLRSNRFYGPLCNSNI--TFPF-QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDE  566 (776)
Q Consensus       491 ~~l~-~L~~L~L~~n~l~~~~~~~~~--~~~l-~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~  566 (776)
                      ..++ +|++|++++|++.+..+....  .... ++|+.||+++|.+++.-...+..                        
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~------------------------  218 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY------------------------  218 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------------------------
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH------------------------
Confidence            5665 899999999998765443221  1223 58999999999987532211100                        


Q ss_pred             eEEEEeccchhhHHHhhcceeEEecCCCcccccchh----hhccCCCCCEEeCCCCcCcccC-------CccccccCCCc
Q 047486          567 SITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPE----VLGNFKSLKVLNLSHNSLTGNI-------PVSFENMTALE  635 (776)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~  635 (776)
                                 .+....+.|+.|+|++|.+++..+.    .+..+++|++|+|++|.+.+..       +..+.++++|+
T Consensus       219 -----------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          219 -----------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             -----------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             -----------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence                       0011135799999999999986653    3567799999999999955433       44677889999


Q ss_pred             EEeccCccCcCCCchhhc
Q 047486          636 SLDLSFNKLDGRIPEQLL  653 (776)
Q Consensus       636 ~L~Ls~N~l~~~~p~~l~  653 (776)
                      .||+++|++....+..+.
T Consensus       288 ~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          288 LVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             EECTTSCBCCGGGCHHHH
T ss_pred             EEecCCCcCCCcchHHHH
Confidence            999999999877555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.6e-23  Score=223.47  Aligned_cols=248  Identities=17%  Similarity=0.239  Sum_probs=137.2

Q ss_pred             CCccccCCCCCCEEEccCCcCcccCCch----hhhcCCCccEEECCCCc---CCccCcccc-------cCCCCccEEEcC
Q 047486          389 IPPSICSLSSLQYLSLSDNNLSGTIPPC----LGNFSTELITLHLKNNS---LEGHIHDTF-------ANASHLRSLDLN  454 (776)
Q Consensus       389 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~----~~~~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~  454 (776)
                      ++..+..+++|++|++++|.+.+..+..    +..+. +|++|++++|.   +++.+|..+       ..+++|++|+|+
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            3344445555666666665555332222    22332 45666665542   223333332       456666666666


Q ss_pred             CCcCcC----CCChhhhcCCCCcEEEcCCCccCcccchhhc----CC---------CCcCEEEccCCcccc-cCCCC-CC
Q 047486          455 SNKLEG----PLPRSLAKCIKLEVVNVGKNMISDSFPCWLG----SL---------HELKILVLRSNRFYG-PLCNS-NI  515 (776)
Q Consensus       455 ~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~-~~~~~-~~  515 (776)
                      +|.+++    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|++.. .++.. ..
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            666665    3455566666666666666666543333332    22         666666666666652 11100 01


Q ss_pred             CcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc
Q 047486          516 TFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR  595 (776)
Q Consensus       516 ~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  595 (776)
                      ...+++|+.|++++|.++..   .    ...+.                            ......++.|+.|+|++|.
T Consensus       183 l~~~~~L~~L~L~~n~l~~~---g----~~~l~----------------------------~~~l~~~~~L~~L~Ls~n~  227 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPE---G----IEHLL----------------------------LEGLAYCQELKVLDLQDNT  227 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHH---H----HHHHH----------------------------HTTGGGCTTCCEEECCSSC
T ss_pred             HHhCCCcCEEECcCCCCCHh---H----HHHHH----------------------------HHHhhcCCCccEEECcCCC
Confidence            12355666677766666410   0    00000                            0000124566777777777


Q ss_pred             cc----ccchhhhccCCCCCEEeCCCCcCccc----CCccccc--cCCCcEEeccCccCcC----CCchhh-cccccccc
Q 047486          596 FH----GEIPEVLGNFKSLKVLNLSHNSLTGN----IPVSFEN--MTALESLDLSFNKLDG----RIPEQL-LSVTALAL  660 (776)
Q Consensus       596 l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~  660 (776)
                      ++    +.+|..+..+++|+.|+|++|.+++.    +|..+..  +++|++|+|++|.+++    .+|..+ .++++|++
T Consensus       228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence            75    45666777777777777777777755    4555533  7777777777777776    366666 55677777


Q ss_pred             ccCccCcceecC
Q 047486          661 LNLSYNRLWGRI  672 (776)
Q Consensus       661 L~ls~N~l~g~i  672 (776)
                      |++++|++++..
T Consensus       308 L~l~~N~l~~~~  319 (386)
T 2ca6_A          308 LELNGNRFSEED  319 (386)
T ss_dssp             EECTTSBSCTTS
T ss_pred             EEccCCcCCcch
Confidence            777777776544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.7e-22  Score=211.50  Aligned_cols=249  Identities=17%  Similarity=0.174  Sum_probs=151.8

Q ss_pred             cEEEccCCcCccCCCccccCC--CCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCcc-CcccccCCCCccEEE
Q 047486          376 KVLLVSNNKLSGKIPPSICSL--SSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGH-IHDTFANASHLRSLD  452 (776)
Q Consensus       376 ~~L~l~~n~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  452 (776)
                      +.++++++.+.   +..+..+  +.++.|++++|.+.+..+. ++.+. +|++|++++|.+++. ++..+..+++|++|+
T Consensus        50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            44444444433   2333333  5556666666655544333 23332 566666666665543 455555666666666


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCcc-cchhhcCCCCcCEEEccCC-ccccc-CCCCCCCcCCC-CccEEeC
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDS-FPCWLGSLHELKILVLRSN-RFYGP-LCNSNITFPFQ-ALRIIDL  527 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~l~-~L~~LdL  527 (776)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..  ...++ +|++|++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~l  202 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLNL  202 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEEC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEEe
Confidence            6666665555556666666666666666 45542 4445556666666666666 55432 1111  13455 6677777


Q ss_pred             CCCc--CCC-CCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc-ccccchhh
Q 047486          528 SHNE--FTG-FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR-FHGEIPEV  603 (776)
Q Consensus       528 s~n~--l~~-~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~  603 (776)
                      ++|.  +++ .+|                                        .....++.|+.|++++|. +++..+..
T Consensus       203 ~~~~~~~~~~~l~----------------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~  242 (336)
T 2ast_B          203 SGYRKNLQKSDLS----------------------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQE  242 (336)
T ss_dssp             CSCGGGSCHHHHH----------------------------------------HHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             CCCcccCCHHHHH----------------------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence            7663  321 111                                        111236788999999999 77788889


Q ss_pred             hccCCCCCEEeCCCCc-CcccCCccccccCCCcEEeccCccCcCCCchhhccc-cccccccCccCcceecCCCC
Q 047486          604 LGNFKSLKVLNLSHNS-LTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSV-TALALLNLSYNRLWGRIPRG  675 (776)
Q Consensus       604 l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~  675 (776)
                      +..+++|+.|++++|. +.......++++++|+.|++++| ++   .+.+..+ ..+..|++++|++++..|..
T Consensus       243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence            9999999999999995 33222236888999999999999 43   2244444 34888889999999888753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1.7e-21  Score=202.44  Aligned_cols=229  Identities=20%  Similarity=0.170  Sum_probs=181.0

Q ss_pred             CCCCCEEeCCCccCCCCChh---hHhhccCCccEEEcCCCCCCccCCCCC--CCCCCCCEEeccCCCCccccCCCCCCCC
Q 047486           31 LTKLSLLHLGATNMSLIKPF---SLLNLSSTMTDLDLGGTRIKGNFPDDI--FRLPNLQILFLNLNSQLTGYLPKSNWSS  105 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~---~~~~l~~~L~~L~Ls~~~l~~~~~~~l--~~l~~L~~L~Ls~n~~~~~~~p~~~~~~  105 (776)
                      ...++.+.+.++.+......   .+..+ ++|++|++++|.+.+..|..+  .++++|++|++++| .+.+..+.. ...
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~-~~~  139 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWL-AEL  139 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSH-HHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhh-HHH
Confidence            44578899988877543211   22344 679999999999999999888  89999999999999 887654421 000


Q ss_pred             CcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCC--C--chhhcCCCCCCEEEccCCcCCCCCCc----
Q 047486          106 PLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQ--L--PHHVSGLSYLTTFDLSGNYFQGGVPS----  177 (776)
Q Consensus       106 ~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L~~n~l~~~~~~----  177 (776)
                      .+..+++|++|++++|.+++..+..++.+++|++|++++|++.+.  +  +..+..+++|++|++++|.++. ++.    
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH
Confidence            123566799999999999988889999999999999999997642  2  2334789999999999999973 333    


Q ss_pred             cccCCCCCCEEEccCCcCCCcCC-CCC---CCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCC
Q 047486          178 WLFTLPSLLSIDLSKNMLNGPID-LFQ---LPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSK  253 (776)
Q Consensus       178 ~l~~l~~L~~L~l~~n~l~~~~~-~~~---~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~  253 (776)
                      .+..+++|++|++++|.+.+..| .+.   .+++|++|++++|.++ .+|..+.  ++|++|++++|++++ ++  .+..
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~--~~~~  292 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-AP--QPDE  292 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CC--CTTS
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cc--hhhh
Confidence            35788999999999999998633 332   2379999999999999 6787775  899999999999984 34  3688


Q ss_pred             CCCCCEEeccCCCCCc
Q 047486          254 LKKLQFLDLSNNSLLS  269 (776)
Q Consensus       254 l~~L~~L~Ls~n~i~~  269 (776)
                      +++|++|++++|++++
T Consensus       293 l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          293 LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCEECSSTTTSC
T ss_pred             CCCccEEECcCCCCCC
Confidence            9999999999999653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.2e-22  Score=214.96  Aligned_cols=249  Identities=21%  Similarity=0.243  Sum_probs=177.2

Q ss_pred             CCCCcEEEccCCcCccCCC----ccccCCCCCCEEEccCC---cCcccCCchh-------hhcCCCccEEECCCCcCCc-
Q 047486          372 PPSTKVLLVSNNKLSGKIP----PSICSLSSLQYLSLSDN---NLSGTIPPCL-------GNFSTELITLHLKNNSLEG-  436 (776)
Q Consensus       372 ~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n---~l~~~~p~~~-------~~~~~~L~~L~L~~n~l~~-  436 (776)
                      +++|+.|++++|.+....+    ..+..+++|++|++++|   ++.+.+|..+       ..+ ++|++|++++|.+++ 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSCCCCTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCCcCCHH
Confidence            3456667777776665433    34667888888888885   4444556554       344 478888888888876 


Q ss_pred             ---cCcccccCCCCccEEEcCCCcCcCCCChh----hhcC---------CCCcEEEcCCCccC-cccc---hhhcCCCCc
Q 047486          437 ---HIHDTFANASHLRSLDLNSNKLEGPLPRS----LAKC---------IKLEVVNVGKNMIS-DSFP---CWLGSLHEL  496 (776)
Q Consensus       437 ---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L  496 (776)
                         .++..+..+++|++|+|++|.++...+..    +..+         ++|++|++++|+++ ...+   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               46667788888888888888886544433    3334         88899999988887 3444   466788889


Q ss_pred             CEEEccCCccccc-----CCCCCCCcCCCCccEEeCCCCcCCC----CCCcccccChHHhhhccccCceecccCccccce
Q 047486          497 KILVLRSNRFYGP-----LCNSNITFPFQALRIIDLSHNEFTG----FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES  567 (776)
Q Consensus       497 ~~L~L~~n~l~~~-----~~~~~~~~~l~~L~~LdLs~n~l~~----~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~  567 (776)
                      ++|++++|++...     .+..  ...+++|+.|+|++|.++.    .+|..                            
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~--l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----------------------------  239 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEG--LAYCQELKVLDLQDNTFTHLGSSALAIA----------------------------  239 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTT--GGGCTTCCEEECCSSCCHHHHHHHHHHH----------------------------
T ss_pred             CEEECcCCCCCHhHHHHHHHHH--hhcCCCccEEECcCCCCCcHHHHHHHHH----------------------------
Confidence            9999999888621     2212  2567889999999998852    22211                            


Q ss_pred             EEEEeccchhhHHHhhcceeEEecCCCccccc----chhhhc--cCCCCCEEeCCCCcCcc----cCCccc-cccCCCcE
Q 047486          568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGE----IPEVLG--NFKSLKVLNLSHNSLTG----NIPVSF-ENMTALES  636 (776)
Q Consensus       568 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~  636 (776)
                                  ...++.|+.|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .++++|++
T Consensus       240 ------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          240 ------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             ------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence                        11257889999999999876    567774  49999999999999998    488877 67899999


Q ss_pred             EeccCccCcCCCc--hhhc-cccccccccC
Q 047486          637 LDLSFNKLDGRIP--EQLL-SVTALALLNL  663 (776)
Q Consensus       637 L~Ls~N~l~~~~p--~~l~-~l~~L~~L~l  663 (776)
                      |+|++|++++..|  ..+. .++.++.+++
T Consensus       308 L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          308 LELNGNRFSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             EECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             EEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence            9999999998775  3332 2445554444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.6e-20  Score=194.44  Aligned_cols=193  Identities=21%  Similarity=0.332  Sum_probs=97.8

Q ss_pred             CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcE
Q 047486          395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV  474 (776)
Q Consensus       395 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  474 (776)
                      .+++|++|++++|.+. .+| .+..+. +|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~-~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVT-TIE-GVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HcCCcCEEEeeCCCcc-Cch-hhhccC-CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            3455555555555554 333 233333 45555555555554433  55555566666666555543  24555555555


Q ss_pred             EEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccC
Q 047486          475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG  554 (776)
Q Consensus       475 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~  554 (776)
                      |++++|++++..+  +..+++|++|++++|++.+..+    ...++                                  
T Consensus       112 L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~----------------------------------  151 (308)
T 1h6u_A          112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP----LAGLT----------------------------------  151 (308)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GGGCT----------------------------------
T ss_pred             EECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc----ccCCC----------------------------------
Confidence            5555555554321  4455555555555554443221    12333                                  


Q ss_pred             ceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCC
Q 047486          555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  634 (776)
                                                    .|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|
T Consensus       152 ------------------------------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L  197 (308)
T 1h6u_A          152 ------------------------------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNL  197 (308)
T ss_dssp             ------------------------------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred             ------------------------------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCC
Confidence                                          44445555555543222  5555555555555555554322  5555555


Q ss_pred             cEEeccCccCcCCCchhhccccccccccCccCccee
Q 047486          635 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWG  670 (776)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  670 (776)
                      ++|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       198 ~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            555555555554332  4555555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.5e-20  Score=187.39  Aligned_cols=150  Identities=19%  Similarity=0.155  Sum_probs=78.9

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCchhhcCCCCCCEEEccC-CcCCCCCCccccCCCCCCEEEc
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGLSYLTTFDLSG-NYFQGGVPSWLFTLPSLLSIDL  190 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l  190 (776)
                      |++|++++|++++..+..|.++++|++|++++|. ++...+.+|.++++|++|++++ |.+++..+.+|.++++|++|++
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l  112 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI  112 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence            5566666666655444456666666666666664 5544444566666666666665 6665544555566666666666


Q ss_pred             cCCcCCCcCCCCCCCCCCc---EEEccCC-cCCCCCCccccCCCCCC-EEECCCCcCccccCccccCCCCCCCEEeccCC
Q 047486          191 SKNMLNGPIDLFQLPNSLQ---DVRLEEN-EIRGTIPNSTFQLVNLT-ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNN  265 (776)
Q Consensus       191 ~~n~l~~~~~~~~~~~~L~---~L~L~~n-~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n  265 (776)
                      ++|.+++..+ +..+++|+   +|++++| .+++..+..|..+++|+ +|++++|.+. .++...|.. ++|++|++++|
T Consensus       113 ~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          113 FNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCC
Confidence            6655554222 32224444   4555554 44433334444555555 5555555554 444333333 44444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=6.3e-22  Score=208.62  Aligned_cols=234  Identities=18%  Similarity=0.187  Sum_probs=157.7

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCccc-CCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT-IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  451 (776)
                      +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. +|..+..++ +|++|++++|.+++..+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            3445555555555554444 44567778888887777644 555555554 68888888887777777777778888888


Q ss_pred             EcCCC-cCcCC-CChhhhcCCCCcEEEcCCC-ccCcc-cchhhcCCC-CcCEEEccCCc--cc-ccCCCCCCCcCCCCcc
Q 047486          452 DLNSN-KLEGP-LPRSLAKCIKLEVVNVGKN-MISDS-FPCWLGSLH-ELKILVLRSNR--FY-GPLCNSNITFPFQALR  523 (776)
Q Consensus       452 ~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~l~~L~  523 (776)
                      ++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.++..  ...+++|+
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~--~~~~~~L~  225 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLV  225 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCS
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH--HhhCCCCC
Confidence            88887 56642 5566777888888888888 77754 566677777 88888888873  43 222221  23567788


Q ss_pred             EEeCCCCc-CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCc-ccccch
Q 047486          524 IIDLSHNE-FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNR-FHGEIP  601 (776)
Q Consensus       524 ~LdLs~n~-l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p  601 (776)
                      .|++++|. +++..+..+                                        ..++.|+.|++++|. ++....
T Consensus       226 ~L~l~~~~~l~~~~~~~l----------------------------------------~~l~~L~~L~l~~~~~~~~~~~  265 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEF----------------------------------------FQLNYLQHLSLSRCYDIIPETL  265 (336)
T ss_dssp             EEECTTCTTCCGGGGGGG----------------------------------------GGCTTCCEEECTTCTTCCGGGG
T ss_pred             EEeCCCCCcCCHHHHHHH----------------------------------------hCCCCCCEeeCCCCCCCCHHHH
Confidence            88888887 554333221                                        114678888888885 333333


Q ss_pred             hhhccCCCCCEEeCCCCcCcccCCcccccc-CCCcEEeccCccCcCCCchhhcc
Q 047486          602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENM-TALESLDLSFNKLDGRIPEQLLS  654 (776)
Q Consensus       602 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~  654 (776)
                      ..++.+++|+.|++++| ++.   ..+..+ ..++.|++++|++++..|..++.
T Consensus       266 ~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          266 LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            46888999999999999 432   344444 34777789999999999987665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=6.3e-20  Score=184.17  Aligned_cols=158  Identities=22%  Similarity=0.188  Sum_probs=77.1

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD  111 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~  111 (776)
                      +++++|+|++|.+.+..+..+..+ ++|++|+|++|.+++..+..+.++++|++|++++| .+.+..+..     +..++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGV-----FDHLT  107 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT-----TTTCT
T ss_pred             CCCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhH-----hcccC
Confidence            345555555555555544445555 55555555555555444444555555555555555 444322222     23333


Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      +|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus       108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            35555555555554433344455555555555555554444444555555555555555554444444444445555544


Q ss_pred             CCcCC
Q 047486          192 KNMLN  196 (776)
Q Consensus       192 ~n~l~  196 (776)
                      +|.+.
T Consensus       188 ~N~~~  192 (251)
T 3m19_A          188 GNQFD  192 (251)
T ss_dssp             SCCBC
T ss_pred             CCcee
Confidence            44443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=2.5e-19  Score=179.78  Aligned_cols=178  Identities=21%  Similarity=0.236  Sum_probs=139.1

Q ss_pred             CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcC
Q 047486          355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL  434 (776)
Q Consensus       355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l  434 (776)
                      ++++++++.++.......+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+
T Consensus        17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l   95 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQL   95 (251)
T ss_dssp             TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCC
T ss_pred             eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcc
Confidence            4455555555433333345677778888888777777888888888888888888865555566555 788888888888


Q ss_pred             CccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC
Q 047486          435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN  514 (776)
Q Consensus       435 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  514 (776)
                      ++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..+...
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence            88888888888889999999998887777778888899999999998888777788888899999999998886555433


Q ss_pred             CCcCCCCccEEeCCCCcCCCC
Q 047486          515 ITFPFQALRIIDLSHNEFTGF  535 (776)
Q Consensus       515 ~~~~l~~L~~LdLs~n~l~~~  535 (776)
                        ..+++|+.|++++|++.+.
T Consensus       176 --~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          176 --DRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             --TTCTTCCEEECCSCCBCTT
T ss_pred             --hCCCCCCEEEeeCCceeCC
Confidence              5678899999999988754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=8.3e-20  Score=189.03  Aligned_cols=194  Identities=20%  Similarity=0.294  Sum_probs=157.2

Q ss_pred             hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486           28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL  107 (776)
Q Consensus        28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l  107 (776)
                      ...+++|++|++++|.+... + .+..+ ++|++|++++|.+.+..+  +..+++|++|++++| .+.+ ++ .     +
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l-~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~-~~-~-----~  103 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYL-NNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKN-VS-A-----I  103 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSC-CG-G-----G
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhcc-CCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCC-ch-h-----h
Confidence            34678899999999988775 3 57778 899999999998885433  888999999999998 6664 23 2     6


Q ss_pred             ccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486          108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS  187 (776)
Q Consensus       108 ~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  187 (776)
                      ..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|++
T Consensus       104 ~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~  177 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT  177 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             cCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence            6677799999999998863 3 38889999999999999886543  8889999999999999885 343 888999999


Q ss_pred             EEccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCc
Q 047486          188 IDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLS  243 (776)
Q Consensus       188 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~  243 (776)
                      |++++|.+++..+ +..+++|++|++++|.+++..  .+..+++|++|++++|.++
T Consensus       178 L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          178 LKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             EECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            9999999887655 444489999999999998554  3888999999999999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.8e-19  Score=199.99  Aligned_cols=67  Identities=27%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             eeEEecCCCcccccchhhhccCCCC-------CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccc
Q 047486          586 FRAMDFSRNRFHGEIPEVLGNFKSL-------KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTA  657 (776)
Q Consensus       586 L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  657 (776)
                      |+.|+|++|+|+ .+|. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       182 L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          182 LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            445555555555 3333 332  44       77777777777 46777777777777777777777777777766544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.3e-19  Score=189.58  Aligned_cols=153  Identities=15%  Similarity=0.063  Sum_probs=83.8

Q ss_pred             CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCcc-EEECCCCc
Q 047486          355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI-TLHLKNNS  433 (776)
Q Consensus       355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~-~L~L~~n~  433 (776)
                      ++++.++++++.....-++++++|++++|+++...+.+|.++++|++|+|++|++.+.+|...+...+++. .+.+++|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            45666766666432223456677777777776555556666777777777777665455543322222333 34455566


Q ss_pred             CCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC-CccCcccchhhcCCC-CcCEEEccCCccc
Q 047486          434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK-NMISDSFPCWLGSLH-ELKILVLRSNRFY  507 (776)
Q Consensus       434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  507 (776)
                      ++++.+..|..+++|++|++++|++++..+..+....++..+++.+ +++....+.+|..+. .+++|++++|++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            6666666666666666666666666655555555555555555543 344443333444332 3444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=5.2e-19  Score=186.84  Aligned_cols=242  Identities=17%  Similarity=0.176  Sum_probs=175.1

Q ss_pred             cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCc-hhhhcCCCccEEECCCCcCCccC-cccccCCCCccE-EE
Q 047486          376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPP-CLGNFSTELITLHLKNNSLEGHI-HDTFANASHLRS-LD  452 (776)
Q Consensus       376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~  452 (776)
                      ++++.++++++ .+|..+  .+++++|+|++|+++ .+|+ .|..+. +|++|+|++|.+.+.+ +.+|.+++++++ +.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            56778888887 566655  367899999999998 6665 455554 7999999999986644 467888888765 66


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCC-cccccCCCCCCCcCCCCccEEeCCCCc
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSN-RFYGPLCNSNITFPFQALRIIDLSHNE  531 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~LdLs~n~  531 (776)
                      ++.|+++...|..|..+++|++|++++|++....+..+....++..+++.++ ++.. ++..........++.|++++|.
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhcccccc
Confidence            6778998888888999999999999999998877777777778888888764 4443 3332211223468889999999


Q ss_pred             CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCC-CcccccchhhhccCCCC
Q 047486          532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSR-NRFHGEIPEVLGNFKSL  610 (776)
Q Consensus       532 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L  610 (776)
                      ++ .+|...|.                                        ...++.+++++ |.++...+..|+.+++|
T Consensus       166 i~-~i~~~~f~----------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L  204 (350)
T 4ay9_X          166 IQ-EIHNSAFN----------------------------------------GTQLDELNLSDNNNLEELPNDVFHGASGP  204 (350)
T ss_dssp             CC-EECTTSST----------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred             cc-CCChhhcc----------------------------------------ccchhHHhhccCCcccCCCHHHhccCccc
Confidence            87 45544332                                        34678888875 55554444568999999


Q ss_pred             CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcc
Q 047486          611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL  668 (776)
Q Consensus       611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  668 (776)
                      ++|||++|+|+...+..|   .+|+.|.+.++.-...+| .+..+++|+.++++++.-
T Consensus       205 ~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          205 VILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             SEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             chhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            999999999985544444   455666655554444667 478888899999887643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3e-19  Score=198.22  Aligned_cols=182  Identities=26%  Similarity=0.356  Sum_probs=118.4

Q ss_pred             ccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccC
Q 047486          424 LITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS  503 (776)
Q Consensus       424 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  503 (776)
                      ++.|++++|.+++ +|..+  .++|+.|+|++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++|++++
T Consensus        61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            4444444444443 22222  134555555555544 233   234555555555555554 333 332  556666666


Q ss_pred             CcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhh
Q 047486          504 NRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKIL  583 (776)
Q Consensus       504 n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (776)
                      |++++ +|.     .+++|+.|++++|.+++ +|..                                           +
T Consensus       130 N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~~-------------------------------------------l  159 (571)
T 3cvr_A          130 NQLTM-LPE-----LPALLEYINADNNQLTM-LPEL-------------------------------------------P  159 (571)
T ss_dssp             SCCSC-CCC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------------C
T ss_pred             CcCCC-CCC-----cCccccEEeCCCCccCc-CCCc-------------------------------------------C
Confidence            66555 232     25667777777777764 4431                                           3


Q ss_pred             cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCC-------cEEeccCccCcCCCchhhcccc
Q 047486          584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL-------ESLDLSFNKLDGRIPEQLLSVT  656 (776)
Q Consensus       584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~  656 (776)
                      +.|+.|+|++|.+++ +|. |.  ++|+.|+|++|+|+ .+|. |..  +|       +.|+|++|+|+ .+|..+..++
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~  230 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD  230 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred             CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence            567888888888887 666 65  89999999999999 6776 665  77       99999999999 6888888899


Q ss_pred             ccccccCccCcceecCCCC
Q 047486          657 ALALLNLSYNRLWGRIPRG  675 (776)
Q Consensus       657 ~L~~L~ls~N~l~g~iP~~  675 (776)
                      +|+.|+|++|+++|.+|..
T Consensus       231 ~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          231 PTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             TTEEEECCSSSCCHHHHHH
T ss_pred             CCCEEEeeCCcCCCcCHHH
Confidence            9999999999999988753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=169.93  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=11.0

Q ss_pred             CCCEEeCCCCcCcccCCccccccC
Q 047486          609 SLKVLNLSHNSLTGNIPVSFENMT  632 (776)
Q Consensus       609 ~L~~L~Ls~N~l~~~~p~~~~~l~  632 (776)
                      +|+.|+++.|+++|.+|..++.++
T Consensus       166 ~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          166 GIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CHHHHHHHHHhCCceeeccCcccc
Confidence            344444444444444444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.1e-18  Score=169.82  Aligned_cols=174  Identities=21%  Similarity=0.252  Sum_probs=141.6

Q ss_pred             EEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCch-hhhcCCCccEEECCCCcC
Q 047486          356 TLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPC-LGNFSTELITLHLKNNSL  434 (776)
Q Consensus       356 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l  434 (776)
                      .++++++.++.......+++++|++++|.+.+..+..+..+++|++|++++|++. .+|.. +..+. +|++|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~-~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT-SLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCC-CcCEEECCCCcC
Confidence            4444555444433334567778888888888777777888999999999999998 45544 44554 799999999999


Q ss_pred             CccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC
Q 047486          435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN  514 (776)
Q Consensus       435 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  514 (776)
                      ++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+      
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence            98888888999999999999999998888888999999999999999998888788999999999999998763      


Q ss_pred             CCcCCCCccEEeCCCCcCCCCCCccc
Q 047486          515 ITFPFQALRIIDLSHNEFTGFLPRRI  540 (776)
Q Consensus       515 ~~~~l~~L~~LdLs~n~l~~~~p~~~  540 (776)
                         .++.|+.|+++.|+++|.+|..+
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccC
Confidence               45678999999999999998653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=4.1e-18  Score=180.68  Aligned_cols=177  Identities=23%  Similarity=0.236  Sum_probs=121.5

Q ss_pred             CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCccccc-CCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486          400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFA-NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG  478 (776)
Q Consensus       400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  478 (776)
                      +.++++++.+. .+|..+.   ..++.|+|++|.|++..+..|. .+++|+.|+|++|++++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56788888777 6776543   3578888888888877777777 78888888888888887777778888888888888


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceec
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEY  558 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~  558 (776)
                      +|+++...+..|..+++|++|+|++|++.+..+..+  ..+++|+.|+|++|.++                         
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~-------------------------  149 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS-------------------------  149 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-------------------------
Confidence            888877766677777777777777776655433322  33444444444444443                         


Q ss_pred             ccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhh---ccCCCCCEEeCCCCcCcccCCccccccCC--
Q 047486          559 MGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVL---GNFKSLKVLNLSHNSLTGNIPVSFENMTA--  633 (776)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--  633 (776)
                                                             +..+..|   ..+++|+.|+|++|+|++..+..|..++.  
T Consensus       150 ---------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~  190 (361)
T 2xot_A          150 ---------------------------------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV  190 (361)
T ss_dssp             ---------------------------------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred             ---------------------------------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence                                                   2222222   45778888888888888666667777766  


Q ss_pred             CcEEeccCccCcC
Q 047486          634 LESLDLSFNKLDG  646 (776)
Q Consensus       634 L~~L~Ls~N~l~~  646 (776)
                      ++.|+|++|.+..
T Consensus       191 l~~l~l~~N~~~C  203 (361)
T 2xot_A          191 KNGLYLHNNPLEC  203 (361)
T ss_dssp             HTTEECCSSCEEC
T ss_pred             cceEEecCCCccC
Confidence            3778888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=9.5e-18  Score=171.89  Aligned_cols=82  Identities=23%  Similarity=0.383  Sum_probs=53.2

Q ss_pred             hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccccccccc
Q 047486          583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  662 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  662 (776)
                      ++.|+.|++++|++++.  ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++ +| .+..+++|+.|+
T Consensus       133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~  206 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            34556666666666654  456667777777777777765444  6667777777777777764 33 366677777777


Q ss_pred             CccCccee
Q 047486          663 LSYNRLWG  670 (776)
Q Consensus       663 ls~N~l~g  670 (776)
                      +++|+++.
T Consensus       207 l~~n~i~~  214 (291)
T 1h6t_A          207 LFSQECLN  214 (291)
T ss_dssp             EEEEEEEC
T ss_pred             CcCCcccC
Confidence            77777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.4e-17  Score=168.94  Aligned_cols=173  Identities=23%  Similarity=0.316  Sum_probs=139.2

Q ss_pred             hcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486           28 ASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL  107 (776)
Q Consensus        28 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l  107 (776)
                      +..+++|++|++++|.+... + .+..+ ++|++|++++|.+++..+  +.++++|++|++++| .+.+ +|.      +
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~-~~~------l  108 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKD-LSS------L  108 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCC-GGG------G
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCC-Chh------h
Confidence            35678889999999888776 3 47777 899999999998885444  888899999999998 7664 232      5


Q ss_pred             ccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486          108 RELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS  187 (776)
Q Consensus       108 ~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  187 (776)
                      ..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++
T Consensus       109 ~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            6667799999999998863  4688899999999999998865  578899999999999999886544  888999999


Q ss_pred             EEccCCcCCCcCCCCCCCCCCcEEEccCCcCCC
Q 047486          188 IDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRG  220 (776)
Q Consensus       188 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~  220 (776)
                      |++++|.+++... +..+++|+.|++++|.++.
T Consensus       183 L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          183 LYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             EECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence            9999998887543 5455899999999998874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=6.2e-17  Score=158.38  Aligned_cols=136  Identities=18%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCEEEccCCcCcccCCch-hhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486          399 LQYLSLSDNNLSGTIPPC-LGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV  477 (776)
Q Consensus       399 L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  477 (776)
                      +++|++++|++++..|.. +..+. +|++|++++|.++++.+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            344455555444332222 22222 4555555555555444445555555555555555555555555555555555555


Q ss_pred             CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCC
Q 047486          478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP  537 (776)
Q Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p  537 (776)
                      ++|++++..|..|..+++|++|++++|++.+..+..+  ..+++|+.|++++|.+.+..+
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGG
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCc
Confidence            5555555555555555555555555555555444332  345555566666665554433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=6.5e-17  Score=158.20  Aligned_cols=133  Identities=19%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD  452 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  452 (776)
                      +.++.|++++|.+.+..+..|..+++|++|++++|++++..|..+..+. +|++|++++|.++++.+..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            3455555555555555555555555666666666655544444444443 455555555555555445555555555555


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRF  506 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  506 (776)
                      |++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            555555555555555555555555555555555544455555555555555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.6e-17  Score=186.53  Aligned_cols=194  Identities=19%  Similarity=0.243  Sum_probs=132.5

Q ss_pred             CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486          398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV  477 (776)
Q Consensus       398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  477 (776)
                      .+..+.++.+.+.+..+  +..+. +|+.|++++|.+....  .+..+++|+.|+|++|.+++..+  +..+++|+.|+|
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~-~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHT-TCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHhccCCCcccccc--hhcCC-CCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            34455666666653333  33444 6888888888877542  47778888888888888876655  778888888888


Q ss_pred             CCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486          478 GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE  557 (776)
Q Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~  557 (776)
                      ++|.+.+.  ..+..+++|+.|+|++|++.+. +   .+..+++|+.|+|++|.+++. +  .+.               
T Consensus        95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l-~--~l~---------------  150 (605)
T 1m9s_A           95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDI-T--VLS---------------  150 (605)
T ss_dssp             CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCC-G--GGG---------------
T ss_pred             cCCCCCCC--hhhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCc-h--hhc---------------
Confidence            88888753  2577788888888888877653 1   135577777888877777642 1  111               


Q ss_pred             cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEE
Q 047486          558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESL  637 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  637 (776)
                                              .++.|+.|+|++|.+++..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|
T Consensus       151 ------------------------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L  202 (605)
T 1m9s_A          151 ------------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVL  202 (605)
T ss_dssp             ------------------------SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEE
T ss_pred             ------------------------ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEE
Confidence                                    14566777777777776655  77777777777777777753  357777777777


Q ss_pred             eccCccCcCCCch
Q 047486          638 DLSFNKLDGRIPE  650 (776)
Q Consensus       638 ~Ls~N~l~~~~p~  650 (776)
                      +|++|++++....
T Consensus       203 ~L~~N~l~~~p~~  215 (605)
T 1m9s_A          203 ELFSQECLNKPIN  215 (605)
T ss_dssp             ECCSEEEECCCCC
T ss_pred             EccCCcCcCCccc
Confidence            7777777754333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=9.3e-17  Score=157.12  Aligned_cols=155  Identities=23%  Similarity=0.247  Sum_probs=139.0

Q ss_pred             cCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCC-ccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCC
Q 047486          354 ITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP-PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN  432 (776)
Q Consensus       354 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n  432 (776)
                      -+.+++++|.++.........+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+..+. +|++|++++|
T Consensus        13 ~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred             CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCC
Confidence            3689999999987544456778999999999998755 5688999999999999999965555676665 8999999999


Q ss_pred             cCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccccc
Q 047486          433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP  509 (776)
Q Consensus       433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  509 (776)
                      .+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.1e-16  Score=157.70  Aligned_cols=61  Identities=21%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             EEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCc
Q 047486          588 AMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP  649 (776)
Q Consensus       588 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  649 (776)
                      .|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus       116 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             eEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            3333333333 345556667777788888887776666677777788888888887776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1e-16  Score=156.83  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=94.9

Q ss_pred             CEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCc
Q 047486           35 SLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLS  114 (776)
Q Consensus        35 ~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~  114 (776)
                      +.++++++.+... |..+   +++|++|++++|.+++..+..|..+++|++|+|++| .+.+..|..     |..+++|+
T Consensus        14 ~~v~c~~~~l~~i-P~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~-----~~~l~~L~   83 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDA-----FQGLRSLN   83 (220)
T ss_dssp             TEEECTTSCCSSC-CSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTT-----TTTCSSCC
T ss_pred             CEEEcCCCCcCcC-CCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHH-----hhCCcCCC
Confidence            4566666665544 3322   256677777777766555556666667777777666 665554544     44444466


Q ss_pred             EEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCc
Q 047486          115 VLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNM  194 (776)
Q Consensus       115 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  194 (776)
                      +|+|++|.++...+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|..+++|++|++++|.
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            66666666665444455666667777777666666666666666667777777766665555556666666666666665


Q ss_pred             CC
Q 047486          195 LN  196 (776)
Q Consensus       195 l~  196 (776)
                      +.
T Consensus       164 ~~  165 (220)
T 2v9t_B          164 FI  165 (220)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.71  E-value=1.2e-16  Score=179.55  Aligned_cols=170  Identities=24%  Similarity=0.302  Sum_probs=87.4

Q ss_pred             CCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCC
Q 047486            4 LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNL   83 (776)
Q Consensus         4 l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L   83 (776)
                      +++|++|++++|.+.    .++ .+..+++|++|+|++|.+.+..+  +..+ ++|++|+|++|.+.+ +| .+..+++|
T Consensus        42 L~~L~~L~l~~n~i~----~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~-l~-~l~~l~~L  111 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK----SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDENKIKD-LS-SLKDLKKL  111 (605)
T ss_dssp             HTTCCCCBCTTCCCC----CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred             CCCCCEEECcCCCCC----CCh-HHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence            445555555555552    222 24555555555555555555433  4555 555555555555542 22 45555555


Q ss_pred             CEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCE
Q 047486           84 QILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTT  163 (776)
Q Consensus        84 ~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  163 (776)
                      ++|+|++| .+.+ ++.      +..+++|+.|+|++|.+++.  ..++.+++|+.|+|++|.+++..|  +..+++|++
T Consensus       112 ~~L~Ls~N-~l~~-l~~------l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~  179 (605)
T 1m9s_A          112 KSLSLEHN-GISD-ING------LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  179 (605)
T ss_dssp             CEEECTTS-CCCC-CGG------GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CEEEecCC-CCCC-Ccc------ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence            55555555 4443 111      44444455555555555533  345555555555555555554433  555555555


Q ss_pred             EEccCCcCCCCCCccccCCCCCCEEEccCCcCCC
Q 047486          164 FDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG  197 (776)
Q Consensus       164 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  197 (776)
                      |+|++|.+++ + ..+..+++|+.|++++|.+.+
T Consensus       180 L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          180 LYLSKNHISD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             EECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             EECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence            5555555553 2 235555555555555555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4e-16  Score=153.70  Aligned_cols=150  Identities=26%  Similarity=0.330  Sum_probs=81.9

Q ss_pred             CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchh-hhcCCCccEEECCCCc
Q 047486          355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL-GNFSTELITLHLKNNS  433 (776)
Q Consensus       355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~~L~~L~L~~n~  433 (776)
                      +.++++++.++.......++|++|++++|.+.+..|..|..+++|++|++++|++. .+|... ..+ ++|++|++++|.
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l-~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSL-TQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-TTCCEEECCSSC
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccC-CCcCEEECCCCc
Confidence            34444444443322223355556666666666555666666666666666666665 344332 333 256666666666


Q ss_pred             CCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCccc
Q 047486          434 LEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFY  507 (776)
Q Consensus       434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  507 (776)
                      +++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            66555555556666666666666665 44555555566666666666655554444555555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1.5e-16  Score=168.57  Aligned_cols=156  Identities=23%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             CcEEEccCCcCccCCCcccc-CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEc
Q 047486          375 TKVLLVSNNKLSGKIPPSIC-SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL  453 (776)
Q Consensus       375 L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  453 (776)
                      ++.|++++|.+++..+..+. .+++|++|++++|++++..+..+..+. +|++|+|++|++++..+..|.++++|++|+|
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            33444444444444444444 455555555555555433333333333 4555555555555444445555555555555


Q ss_pred             CCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhh---cCCCCcCEEEccCCcccccCCCCCCCcCCCC--ccEEeCC
Q 047486          454 NSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWL---GSLHELKILVLRSNRFYGPLCNSNITFPFQA--LRIIDLS  528 (776)
Q Consensus       454 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--L~~LdLs  528 (776)
                      ++|++++..|..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|++.+..+...  ..++.  ++.|+++
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l~~~~l~~l~l~  197 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL--QKLPAWVKNGLYLH  197 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHH--HHSCHHHHTTEECC
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHh--hhccHhhcceEEec
Confidence            5555555445555555555555555555554444333   345555555555555543221111  12232  3556666


Q ss_pred             CCcCC
Q 047486          529 HNEFT  533 (776)
Q Consensus       529 ~n~l~  533 (776)
                      +|.+.
T Consensus       198 ~N~~~  202 (361)
T 2xot_A          198 NNPLE  202 (361)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            66655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=6.6e-17  Score=162.89  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=60.5

Q ss_pred             CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEcc
Q 047486          423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLR  502 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  502 (776)
                      ++..+++++|.+++..  .+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            3555666666665443  455666777777777776643 3 56667777777777777766544  6666777777777


Q ss_pred             CCcccccCCCCCCCcCCCCccEEeCCCCcCC
Q 047486          503 SNRFYGPLCNSNITFPFQALRIIDLSHNEFT  533 (776)
Q Consensus       503 ~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~  533 (776)
                      +|++.+..+ .   .. ++|+.|++++|.++
T Consensus        94 ~N~l~~l~~-~---~~-~~L~~L~L~~N~l~  119 (263)
T 1xeu_A           94 RNRLKNLNG-I---PS-ACLSRLFLDNNELR  119 (263)
T ss_dssp             SSCCSCCTT-C---CC-SSCCEEECCSSCCS
T ss_pred             CCccCCcCc-c---cc-CcccEEEccCCccC
Confidence            666654221 1   11 55566666666555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.3e-16  Score=153.27  Aligned_cols=132  Identities=20%  Similarity=0.211  Sum_probs=85.3

Q ss_pred             hhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCccccccccccc
Q 047486           53 LNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIG  132 (776)
Q Consensus        53 ~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~  132 (776)
                      +.+ ++|++|++++|.+. .+| .+..+++|++|++++| .+..  +..     +..+++|++|++++|.+++..+..++
T Consensus        41 ~~l-~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~--~~~-----l~~l~~L~~L~l~~n~l~~~~~~~l~  109 (197)
T 4ezg_A           41 AQM-NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATN--YNP-----ISGLSNLERLRIMGKDVTSDKIPNLS  109 (197)
T ss_dssp             HHH-HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSC--CGG-----GTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred             hhc-CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCc--chh-----hhcCCCCCEEEeECCccCcccChhhc
Confidence            445 67777777777776 445 5667777777777777 4432  112     45555577777777777766666677


Q ss_pred             CCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCc-CCCCCCccccCCCCCCEEEccCCcCCC
Q 047486          133 NLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY-FQGGVPSWLFTLPSLLSIDLSKNMLNG  197 (776)
Q Consensus       133 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~  197 (776)
                      .+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            77777777777777766666667777777777777776 44 344 46666666666666665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=5.6e-17  Score=163.39  Aligned_cols=171  Identities=16%  Similarity=0.173  Sum_probs=146.8

Q ss_pred             CCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCcc
Q 047486          444 NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALR  523 (776)
Q Consensus       444 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  523 (776)
                      .+.++..+++++|.+++..  .+..+++|+.|++++|.++.. + .+..+++|++|++++|++.+..+    +..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP----LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCC
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh----hccCCCCC
Confidence            3566888899999998654  688999999999999999864 4 68999999999999999988655    46789999


Q ss_pred             EEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhh
Q 047486          524 IIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEV  603 (776)
Q Consensus       524 ~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  603 (776)
                      .|++++|++++ +|...                                          .+.|+.|++++|++++.  +.
T Consensus        89 ~L~L~~N~l~~-l~~~~------------------------------------------~~~L~~L~L~~N~l~~~--~~  123 (263)
T 1xeu_A           89 ELSVNRNRLKN-LNGIP------------------------------------------SACLSRLFLDNNELRDT--DS  123 (263)
T ss_dssp             EEECCSSCCSC-CTTCC------------------------------------------CSSCCEEECCSSCCSBS--GG
T ss_pred             EEECCCCccCC-cCccc------------------------------------------cCcccEEEccCCccCCC--hh
Confidence            99999999985 33211                                          14679999999999974  36


Q ss_pred             hccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceec
Q 047486          604 LGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGR  671 (776)
Q Consensus       604 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  671 (776)
                      ++.+++|+.|++++|++++. | .++.+++|+.|+|++|++++.  ..+..+++|+.|++++|++++.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999999999999999965 4 689999999999999999976  6789999999999999999865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.5e-16  Score=152.85  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=130.2

Q ss_pred             cCCCCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcc
Q 047486           29 SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLR  108 (776)
Q Consensus        29 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~  108 (776)
                      ..+++|++|++++|.+... | .+..+ ++|++|++++|.+.  .+..+..+++|++|++++| .+.+..|..     +.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~~~-----l~  109 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-T-GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGK-DVTSDKIPN-----LS  109 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-T-TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECT-TCBGGGSCC-----CT
T ss_pred             hhcCCccEEeccCCCccCh-H-HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECC-ccCcccChh-----hc
Confidence            5678999999999999854 4 68888 89999999999765  3347889999999999999 888766766     56


Q ss_pred             cCCCCcEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCE
Q 047486          109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLS  187 (776)
Q Consensus       109 ~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  187 (776)
                      .+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++
T Consensus       110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence            67779999999999998888999999999999999998 65 455 69999999999999999985 44 6889999999


Q ss_pred             EEccCCcCCC
Q 047486          188 IDLSKNMLNG  197 (776)
Q Consensus       188 L~l~~n~l~~  197 (776)
                      |++++|.+.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            9999998753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=6e-17  Score=154.83  Aligned_cols=91  Identities=21%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhcccccccccc
Q 047486          583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLN  662 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  662 (776)
                      ++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45567777777777777777777777788888888877777777777777788888888887777777777777777888


Q ss_pred             CccCcceecCC
Q 047486          663 LSYNRLWGRIP  673 (776)
Q Consensus       663 ls~N~l~g~iP  673 (776)
                      +++|++.+..|
T Consensus       133 L~~N~l~c~c~  143 (192)
T 1w8a_A          133 LASNPFNCNCH  143 (192)
T ss_dssp             CTTCCBCCSGG
T ss_pred             eCCCCccCcCc
Confidence            88887776554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.4e-18  Score=194.03  Aligned_cols=189  Identities=21%  Similarity=0.260  Sum_probs=106.1

Q ss_pred             cCCCCccEEeccCCCCCCcchhhhCCcccceEecccCc-------------cccccCCCcccCCccCCeEe-CcCccccc
Q 047486          280 YSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNR-------------IQGRISKSDSPGWKSLIDLD-LSNNFMTH  345 (776)
Q Consensus       280 ~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~-------------l~~~~~~~~~~~l~~L~~L~-l~~n~l~~  345 (776)
                      +.+++|+.|++++|.++.+|..+..+++|+.|++++|.             ..+..|.. +..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhcccc-
Confidence            35678888888888888888888888899998886664             22222222 24555666665 4444332 


Q ss_pred             cccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCcc
Q 047486          346 IELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELI  425 (776)
Q Consensus       346 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~  425 (776)
                             .|..+.+.+|.+....+   ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+. +|+
T Consensus       424 -------~L~~l~l~~n~i~~l~~---~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~  489 (567)
T 1dce_A          424 -------DLRSKFLLENSVLKMEY---ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR-CLE  489 (567)
T ss_dssp             -------HHHHHHHHHHHHHHHHH---TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT-TCC
T ss_pred             -------hhhhhhhhcccccccCc---cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC-CCC
Confidence                   22233333333322111   124555555555554 343 555566666666666655 5555555544 455


Q ss_pred             EEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCC-ChhhhcCCCCcEEEcCCCccCccc
Q 047486          426 TLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL-PRSLAKCIKLEVVNVGKNMISDSF  486 (776)
Q Consensus       426 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~  486 (776)
                      .|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            66665555554 23 4555555555555555555554 555555555555555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=3.9e-18  Score=190.51  Aligned_cols=202  Identities=19%  Similarity=0.160  Sum_probs=102.4

Q ss_pred             CCCCCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCcc-------------CCCCChhhHhhccCCccEEE-cCCCC
Q 047486            3 HLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATN-------------MSLIKPFSLLNLSSTMTDLD-LGGTR   68 (776)
Q Consensus         3 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~-------------~~~~~~~~~~~l~~~L~~L~-Ls~~~   68 (776)
                      .+++|+.|+|++|.+    ..+|..++++++|+.|++++|.             ..+..|..+..+ ++|+.|+ ++.|.
T Consensus       347 ~~~~L~~L~Ls~n~L----~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~  421 (567)
T 1dce_A          347 TDEQLFRCELSVEKS----TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAY  421 (567)
T ss_dssp             TTTTSSSCCCCHHHH----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHH
T ss_pred             cCccceeccCChhhH----HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhcc
Confidence            456677777777766    4567777777777777776654             444555566666 6666666 44332


Q ss_pred             CCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCccc
Q 047486           69 IKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT  148 (776)
Q Consensus        69 l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  148 (776)
                      +.           .|+.+.+++| .+....+     .      .|++|++++|.+++ +|. ++.+++|++|++++|.++
T Consensus       422 ~~-----------~L~~l~l~~n-~i~~l~~-----~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~  476 (567)
T 1dce_A          422 LD-----------DLRSKFLLEN-SVLKMEY-----A------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR  476 (567)
T ss_dssp             HH-----------HHHHHHHHHH-HHHHHHH-----T------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred             cc-----------hhhhhhhhcc-cccccCc-----c------CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence            21           1111122222 1111000     0      14555555555553 343 555555555555555555


Q ss_pred             CCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCc--CCCCCCCCCCcEEEccCCcCCCCCCc--
Q 047486          149 GQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP--IDLFQLPNSLQDVRLEENEIRGTIPN--  224 (776)
Q Consensus       149 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~n~i~~~~~~--  224 (776)
                       .+|..|+++++|++|+|++|.+++ +| .++.+++|++|++++|.+++.  +..+..+++|+.|++++|.+++..|.  
T Consensus       477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence             445555555555555555555553 33 455555555555555555544  22333335555555555555543321  


Q ss_pred             -cccCCCCCCEEEC
Q 047486          225 -STFQLVNLTILDL  237 (776)
Q Consensus       225 -~~~~l~~L~~L~L  237 (776)
                       .+..+++|+.|++
T Consensus       554 ~l~~~lp~L~~L~l  567 (567)
T 1dce_A          554 RLAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHHCTTCSEEEC
T ss_pred             HHHHHCcccCccCC
Confidence             1233666776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=6.8e-17  Score=169.06  Aligned_cols=283  Identities=14%  Similarity=0.085  Sum_probs=170.7

Q ss_pred             CCCCCEEeCCCccCCCCChhhHhh-ccCCccEEEcCCCCCC--ccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCc
Q 047486           31 LTKLSLLHLGATNMSLIKPFSLLN-LSSTMTDLDLGGTRIK--GNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPL  107 (776)
Q Consensus        31 l~~L~~L~L~~~~~~~~~~~~~~~-l~~~L~~L~Ls~~~l~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l  107 (776)
                      +.+++.|.++++ +.......+.. + ++|++|||++|.+.  ...+..   ++.++.+.+..|     .+|..    .|
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l-~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~-----~I~~~----aF   89 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEF-PSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN-----FVPAY----AF   89 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSC-TTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT-----EECTT----TT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhh-ccCeEEecCcceeEEecCcccc---cccccccccccc-----ccCHH----Hh
Confidence            567788888754 22222233444 4 67888888888776  222222   222344444444     22322    24


Q ss_pred             cc--------CCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCc----CCCCC
Q 047486          108 RE--------LDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY----FQGGV  175 (776)
Q Consensus       108 ~~--------L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~----l~~~~  175 (776)
                      .+        +.+|+.|++.. .++...+.+|.+|++|+.+++++|.+....+.+|.++.++..+....+.    .....
T Consensus        90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~  168 (329)
T 3sb4_A           90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE  168 (329)
T ss_dssp             EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred             cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence            45        67777777777 6766666677777777777777777766666777777666666665532    22233


Q ss_pred             CccccCCCCCC-EEEccCCcCCC-cC-CCCCCCCCCcEEEccCCcCCCCCCccc-cCCCCCCEEECCCCcCccccCcccc
Q 047486          176 PSWLFTLPSLL-SIDLSKNMLNG-PI-DLFQLPNSLQDVRLEENEIRGTIPNST-FQLVNLTILDLSSNNLSGAIRFDQF  251 (776)
Q Consensus       176 ~~~l~~l~~L~-~L~l~~n~l~~-~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~i~~~~~  251 (776)
                      ..+|.++..|+ .+.+....--. .. ...-.+.+++.+.+.++-.. .....+ ..+++|+.+++++|+++ .++...|
T Consensus       169 ~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF  246 (329)
T 3sb4_A          169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTF  246 (329)
T ss_dssp             TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTT
T ss_pred             ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhh
Confidence            44555666666 44443221100 00 00011244555555443211 111111 13678888888888887 7777888


Q ss_pred             CCCCCCCEEeccCCCCCccccccccccccCCCCcc-EEeccCCCCCCcc-hhhhCCcccceEecccCccccccCCCcccC
Q 047486          252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLK-VLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPG  329 (776)
Q Consensus       252 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~  329 (776)
                      .+|++|+++++.+| ++.++..+    |..+++|+ .+++.+ .++.++ .+|.+|++|+.+++++|.++ .++...|.+
T Consensus       247 ~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~  319 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGN  319 (329)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCT
T ss_pred             hCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcC
Confidence            88888888888887 66555433    66777787 888877 676676 47788888888888888877 677777788


Q ss_pred             CccCCeEe
Q 047486          330 WKSLIDLD  337 (776)
Q Consensus       330 l~~L~~L~  337 (776)
                      +++|+.++
T Consensus       320 ~~~L~~ly  327 (329)
T 3sb4_A          320 GVPSKLIY  327 (329)
T ss_dssp             TCCCCEEE
T ss_pred             Ccchhhhc
Confidence            88887765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=6.3e-17  Score=186.62  Aligned_cols=157  Identities=20%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCC-----EEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCC
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQ-----YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASH  447 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~-----~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  447 (776)
                      +.++.|++.+|.+... +..+.....|.     .++++.|.+. ..|..+..+. .|+.|+|++|.+.. ++..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~-~L~~L~Ls~n~l~~-l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQ-LWHALDLSNLQIFN-ISANIFKYDF  248 (727)
T ss_dssp             ---------------------------------------------------CCC-CCCEEECTTSCCSC-CCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCC-CCcEEECCCCCCCC-CChhhcCCCC
Confidence            4567777777777643 32222222222     2222333332 3344444443 57777777777763 3434446677


Q ss_pred             ccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeC
Q 047486          448 LRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDL  527 (776)
Q Consensus       448 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdL  527 (776)
                      |++|+|++|.++ .+|..|.++++|++|+|++|+++ .+|..|..+++|++|+|++|.+. .+|..  +..+++|+.|+|
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~--~~~l~~L~~L~L  323 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE--FGNLCNLQFLGV  323 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS--TTSCTTCCCEEC
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh--hhcCCCccEEeC
Confidence            777777777776 56666777777777777777776 45666777777777777777665 34443  255666777777


Q ss_pred             CCCcCCCCCCc
Q 047486          528 SHNEFTGFLPR  538 (776)
Q Consensus       528 s~n~l~~~~p~  538 (776)
                      ++|.+++.+|.
T Consensus       324 ~~N~l~~~~p~  334 (727)
T 4b8c_D          324 EGNPLEKQFLK  334 (727)
T ss_dssp             TTSCCCSHHHH
T ss_pred             CCCccCCCChH
Confidence            77776655443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=7.3e-17  Score=186.09  Aligned_cols=216  Identities=19%  Similarity=0.166  Sum_probs=101.0

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhccCCc-----cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCC
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNLSSTM-----TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSP  106 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L-----~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~  106 (776)
                      ++++.|+|.++.+... +..+... ..|     ..++++.|.+. ..+..+..+++|+.|+|++| .+. .+|..     
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~-l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~-----  242 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQH-KKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIF-NISAN-----  242 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTS-CCS-CCCGG-----
T ss_pred             CccceEEeeCCCCCcc-hhhHhhc-CccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCC-CCChh-----
Confidence            4566677776666553 2222111 122     22223333333 34667777888888888888 665 55654     


Q ss_pred             cccCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCC
Q 047486          107 LRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLL  186 (776)
Q Consensus       107 l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  186 (776)
                      +.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|+
T Consensus       243 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~  319 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQ  319 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCC
T ss_pred             hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCcc
Confidence            335556888888888888 77778888888888888888888 66888888888888888888886 6677788888888


Q ss_pred             EEEccCCcCCCcCCCC-CC-CCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCC--------cCccccCccccCCCCC
Q 047486          187 SIDLSKNMLNGPIDLF-QL-PNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN--------NLSGAIRFDQFSKLKK  256 (776)
Q Consensus       187 ~L~l~~n~l~~~~~~~-~~-~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~i~~~~~~~l~~  256 (776)
                      +|+|++|.+++.++.. .. ...+..+++++|.+++.+|.      .|+.|+++.|        .+.+.. ...+..+..
T Consensus       320 ~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~-~~~~~~l~~  392 (727)
T 4b8c_D          320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQST-EHLATDLAK  392 (727)
T ss_dssp             CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------
T ss_pred             EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccc-cchhhcccc
Confidence            8888888887654432 11 01122366788888777765      3455566655        222111 123445555


Q ss_pred             CCEEeccCCCC
Q 047486          257 LQFLDLSNNSL  267 (776)
Q Consensus       257 L~~L~Ls~n~i  267 (776)
                      +....+++|-+
T Consensus       393 ~~~~~ls~Nil  403 (727)
T 4b8c_D          393 RTFTVLSYNTL  403 (727)
T ss_dssp             ---------CC
T ss_pred             cceeeeecccc
Confidence            56666777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.62  E-value=3e-14  Score=152.87  Aligned_cols=332  Identities=16%  Similarity=0.138  Sum_probs=177.9

Q ss_pred             cccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCC
Q 047486          126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLP  205 (776)
Q Consensus       126 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  205 (776)
                      +...+|.+|++|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+-..-...+|..+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~  139 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGC  139 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecc
Confidence            33445666666666666533 44444556666666666666543 44344455666666666555443222222233332


Q ss_pred             CCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCc
Q 047486          206 NSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSL  285 (776)
Q Consensus       206 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L  285 (776)
                      . +........ .......+|.++++|+.+.+.++. . .++...|.++++|+.+++..+ ++.+...    .+..+..|
T Consensus       140 ~-~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~----~F~~~~~L  210 (394)
T 4fs7_A          140 D-FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDY----CFAECILL  210 (394)
T ss_dssp             C-CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTT----TTTTCTTC
T ss_pred             c-ccccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCch----hhcccccc
Confidence            2 222222111 111233456666777777775543 2 455566677777777666554 3223222    23445555


Q ss_pred             cEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccC
Q 047486          286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQ  365 (776)
Q Consensus       286 ~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~  365 (776)
                      +.+.+..+.. .+.+.......|+.+.+.... . .+....|.++..++.+.+..+.. .+                  .
T Consensus       211 ~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~-~i------------------~  268 (394)
T 4fs7_A          211 ENMEFPNSLY-YLGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKL-RI------------------G  268 (394)
T ss_dssp             CBCCCCTTCC-EECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTC-EE------------------C
T ss_pred             ceeecCCCce-EeehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcc-ee------------------e
Confidence            5555544322 122323334555655554332 1 34444445555565555544321 11                  1


Q ss_pred             CCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCC
Q 047486          366 GSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANA  445 (776)
Q Consensus       366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  445 (776)
                      ...+..+..++.+......+   ....|..+.+|+.+.+.++ +. .+++..+..+.+|+.+++.++ ++.+...+|.+|
T Consensus       269 ~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c  342 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC  342 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred             ccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC
Confidence            22233344444444444332   2345666777777777654 43 444443333346888887643 666667788888


Q ss_pred             CCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEE
Q 047486          446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL  499 (776)
Q Consensus       446 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  499 (776)
                      .+|+.+++..+ ++.+...+|.+|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       343 ~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          343 TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            88888888776 66666778888888888888654 22 234568888887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=9.9e-16  Score=160.20  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCc-EEeccCccCcCCCchhhccccccccc
Q 047486          583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALE-SLDLSFNKLDGRIPEQLLSVTALALL  661 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L  661 (776)
                      ++.|+.++|++|+++...+.+|.+|++|+.|+|++| ++.+.+.+|.++++|+ .+++.+ .++.+-+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            567777777777777666666777777777777776 6656666777777777 777777 6665666677777777777


Q ss_pred             cCccCcce
Q 047486          662 NLSYNRLW  669 (776)
Q Consensus       662 ~ls~N~l~  669 (776)
                      ++++|.+.
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            77777765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=1.5e-15  Score=145.08  Aligned_cols=131  Identities=26%  Similarity=0.304  Sum_probs=89.5

Q ss_pred             cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCE
Q 047486           60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATE  139 (776)
Q Consensus        60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  139 (776)
                      ++++++++.++ .+|..+..  +|++|++++| .+.+..+...    +..+++|++|++++|.+++..|..|.++++|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDN-ELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSC-CCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCC-cCCccCCccc----cccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            56677777664 55655443  6777777777 5554433211    455555777777777777666777777777777


Q ss_pred             EEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCc
Q 047486          140 IAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP  198 (776)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  198 (776)
                      |++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus        83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            77777777776666677777777777777777777777777777777777777776653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=4.6e-15  Score=138.58  Aligned_cols=133  Identities=19%  Similarity=0.167  Sum_probs=82.0

Q ss_pred             CCccEEEcCCCCCC-ccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCC
Q 047486           57 STMTDLDLGGTRIK-GNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLT  135 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~  135 (776)
                      ++|++|++++|.+. +.+|..+..+++|++|++++| .+.+.  ..     +..+++|++|++++|.+++.+|..+..++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SN-----LPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SS-----CCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hh-----hccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            55666666666665 555665666666666666666 55432  12     44455566666666666655666666667


Q ss_pred             CCCEEEccCCcccCCC-chhhcCCCCCCEEEccCCcCCCCCC---ccccCCCCCCEEEccCCcCCC
Q 047486          136 RATEIAFASNHFTGQL-PHHVSGLSYLTTFDLSGNYFQGGVP---SWLFTLPSLLSIDLSKNMLNG  197 (776)
Q Consensus       136 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~  197 (776)
                      +|++|++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            7777777777666431 2566667777777777777664443   356666677777766666543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.9e-15  Score=135.31  Aligned_cols=128  Identities=19%  Similarity=0.182  Sum_probs=100.1

Q ss_pred             CCccEEEcCCCCCC-ccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCC
Q 047486           57 STMTDLDLGGTRIK-GNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLT  135 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~  135 (776)
                      ++|++|++++|.+. +.+|..+..+++|++|++++| .+.+.  ..     +..+++|++|++++|.+++.+|..+..++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--AN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TT-----CCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hh-----hhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            67888888888887 677877788888888888888 66654  22     55666688888888888876777777888


Q ss_pred             CCCEEEccCCcccCC-CchhhcCCCCCCEEEccCCcCCCCCC---ccccCCCCCCEEEccC
Q 047486          136 RATEIAFASNHFTGQ-LPHHVSGLSYLTTFDLSGNYFQGGVP---SWLFTLPSLLSIDLSK  192 (776)
Q Consensus       136 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~  192 (776)
                      +|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            888888888888763 34778888888888888888886555   4678888888888763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=1.6e-13  Score=146.44  Aligned_cols=229  Identities=13%  Similarity=0.117  Sum_probs=106.3

Q ss_pred             CCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccce
Q 047486          231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYL  310 (776)
Q Consensus       231 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~  310 (776)
                      +|+.+.+..+ +. .++..+|.++ +|+.+.+.. .++.+...    .|..+++|+.+++.+|.++.++.....+.+|+.
T Consensus       136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~  207 (401)
T 4fdw_A          136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFVYAGIEE  207 (401)
T ss_dssp             CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred             CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHH----HhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence            3444444433 33 3444444442 355555443 33322222    233444555555555555545432222456666


Q ss_pred             EecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCC
Q 047486          311 LDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP  390 (776)
Q Consensus       311 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~  390 (776)
                      +.+..+ +. .++...|.++++|+.+++..+ ++.+....|.+                   .+|+.+.+ .+.+.....
T Consensus       208 l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-------------------~~L~~i~l-p~~i~~I~~  264 (401)
T 4fdw_A          208 VLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-------------------SGITTVKL-PNGVTNIAS  264 (401)
T ss_dssp             EECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-------------------CCCSEEEE-ETTCCEECT
T ss_pred             EEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-------------------CCccEEEe-CCCccEECh
Confidence            666533 33 455555666666666666543 33333332211                   23344444 233444455


Q ss_pred             ccccCCCCCCEEEccCCcCc----ccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhh
Q 047486          391 PSICSLSSLQYLSLSDNNLS----GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL  466 (776)
Q Consensus       391 ~~~~~~~~L~~L~Ls~n~l~----~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  466 (776)
                      .+|.+|++|+.+++.+|.+.    ..++...+..+++|+.+++. +.++.+...+|.+|.+|+.+.|..+ ++.+.+.+|
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence            66777777777777666543    01222222222345555554 2244444445555555555555333 333444445


Q ss_pred             hcCCCCcEEEcCCCccCcccchhhcCC
Q 047486          467 AKCIKLEVVNVGKNMISDSFPCWLGSL  493 (776)
Q Consensus       467 ~~l~~L~~L~L~~n~l~~~~~~~~~~l  493 (776)
                      .+| +|+.+++.+|.+....+..|.++
T Consensus       343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             SSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             CCC-CCCEEEEcCCCCcccccccccCC
Confidence            555 55555555554444433444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=8.2e-15  Score=136.82  Aligned_cols=82  Identities=22%  Similarity=0.314  Sum_probs=46.4

Q ss_pred             CcEEEccCCccc-ccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          113 LSVLDIGFCNFT-GSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       113 L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      |++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            555555555555 44555555556666666666655543  455556666666666666654455555555555555555


Q ss_pred             CCcCC
Q 047486          192 KNMLN  196 (776)
Q Consensus       192 ~n~l~  196 (776)
                      +|.++
T Consensus       104 ~N~l~  108 (168)
T 2ell_A          104 GNKLK  108 (168)
T ss_dssp             SSSCC
T ss_pred             CCccC
Confidence            55554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=5.8e-13  Score=142.05  Aligned_cols=263  Identities=9%  Similarity=0.061  Sum_probs=135.5

Q ss_pred             CCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCC
Q 047486           57 STMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTR  136 (776)
Q Consensus        57 ~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~  136 (776)
                      ..++.+.+.++ ++..-..+|.++ +|+.+.+..+  +...-...     |.+. .|+.+++.. .++...+.+|.+|++
T Consensus       113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~a-----F~~~-~L~~i~lp~-~l~~I~~~aF~~c~~  181 (401)
T 4fdw_A          113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMA-----FFNS-TVQEIVFPS-TLEQLKEDIFYYCYN  181 (401)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTT-----TTTC-CCCEEECCT-TCCEECSSTTTTCTT
T ss_pred             CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHh-----cCCC-CceEEEeCC-CccEehHHHhhCccc
Confidence            45566666542 443344555554 5777766554  22111122     2221 266666664 455455556666777


Q ss_pred             CCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCcCCCCCCCCCCcEEEccCC
Q 047486          137 ATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEEN  216 (776)
Q Consensus       137 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n  216 (776)
                      |+.+++++|.++.....+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+--.-...+|.. .+|+.+.+. +
T Consensus       182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~  257 (401)
T 4fdw_A          182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-N  257 (401)
T ss_dssp             CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-T
T ss_pred             CCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-C
Confidence            77777766666654445554 466666666643 5545556666666666666665421112233433 556666663 3


Q ss_pred             cCCCCCCccccCCCCCCEEECCCCcCc----cccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccC
Q 047486          217 EIRGTIPNSTFQLVNLTILDLSSNNLS----GAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY  292 (776)
Q Consensus       217 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~  292 (776)
                      .++.....+|.++++|+.+++.+|.+.    ..++...|.+|++|+.+++.+ .++.++..+    |..+.+|+.+.+..
T Consensus       258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a----F~~c~~L~~l~lp~  332 (401)
T 4fdw_A          258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL----LGGNRKVTQLTIPA  332 (401)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT----TTTCCSCCEEEECT
T ss_pred             CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh----hcCCCCccEEEECc
Confidence            344344555566666666666555432    124445566666666666652 344443322    44455555555533


Q ss_pred             CCCCCcc-hhhhCCcccceEecccCccccccCCCcccCCc-cCCeEeCcCcc
Q 047486          293 CNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWK-SLIDLDLSNNF  342 (776)
Q Consensus       293 n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~  342 (776)
                      + ++.++ .+|.++ +|+.+++.+|.+. .++...|.+++ .++.|.+..+.
T Consensus       333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          333 N-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             T-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred             c-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence            2 44443 245555 5555555555544 33333344442 44455544443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=7e-14  Score=133.34  Aligned_cols=107  Identities=25%  Similarity=0.343  Sum_probs=50.3

Q ss_pred             CCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEc
Q 047486          398 SLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNV  477 (776)
Q Consensus       398 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  477 (776)
                      +|++|++++|.++ .+|..+..+. +|++|++++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        32 ~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           32 DVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL  109 (193)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence            4445555555444 4444443333 4455555555544444444444455555555555554444444444444555555


Q ss_pred             CCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486          478 GKNMISDSFPCWLGSLHELKILVLRSNRF  506 (776)
Q Consensus       478 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  506 (776)
                      ++|+++...+..|..+++|+.|++++|++
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          110 HGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            44444444433444444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.8e-14  Score=131.51  Aligned_cols=127  Identities=20%  Similarity=0.255  Sum_probs=70.0

Q ss_pred             CCCcEEEccCCcCc-cCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486          373 PSTKVLLVSNNKLS-GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       373 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  451 (776)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+. +|++|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            44555555555555 45555556666666666666666532  3333333 46666666666655555555555566666


Q ss_pred             EcCCCcCcCC-CChhhhcCCCCcEEEcCCCccCcccc---hhhcCCCCcCEEEcc
Q 047486          452 DLNSNKLEGP-LPRSLAKCIKLEVVNVGKNMISDSFP---CWLGSLHELKILVLR  502 (776)
Q Consensus       452 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~  502 (776)
                      ++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666665543 23455555666666666665555444   345555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.53  E-value=7.4e-13  Score=142.02  Aligned_cols=235  Identities=17%  Similarity=0.136  Sum_probs=144.3

Q ss_pred             CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccC
Q 047486          202 FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS  281 (776)
Q Consensus       202 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~  281 (776)
                      |..+.+|+.+.+.++. .......|..+.+|+.+.+..+ +. .+....|.++..|+.+.+..+... +.     .....
T Consensus       158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~-i~-----~~~~~  228 (394)
T 4fs7_A          158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY-LG-----DFALS  228 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE-EC-----TTTTT
T ss_pred             hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE-ee-----hhhcc
Confidence            3344555555554432 2233445666777777777655 33 555567777777777776655321 11     11234


Q ss_pred             CCCccEEeccCCCCCCcc-hhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEecc
Q 047486          282 LPSLKVLRFAYCNITEFP-GFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLR  360 (776)
Q Consensus       282 l~~L~~L~l~~n~l~~lp-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  360 (776)
                      ...|+.+.+... ++.+. ..+..+..++.+.+..+..  .+....|..+..++.+......+..               
T Consensus       229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~~---------------  290 (394)
T 4fs7_A          229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVPE---------------  290 (394)
T ss_dssp             TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEECT---------------
T ss_pred             cCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeecc---------------
Confidence            556777766543 33343 3567788888888876643  3556666777777666555443322               


Q ss_pred             CcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcc
Q 047486          361 NNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD  440 (776)
Q Consensus       361 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~  440 (776)
                            ..+..+.+|+.+.+.++ +......+|.+|++|+.+++.++ ++ .+++..+..+.+|+.+++..+ ++.+...
T Consensus       291 ------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          291 ------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             ------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             ------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence                  22333445555555443 44455667888889999988754 54 554444444447999999776 7777788


Q ss_pred             cccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEE
Q 047486          441 TFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVV  475 (776)
Q Consensus       441 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  475 (776)
                      +|.+|.+|+.+++..+ ++ ....+|.+|++|+.+
T Consensus       361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            9999999999999765 33 335678889888765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=131.74  Aligned_cols=127  Identities=23%  Similarity=0.304  Sum_probs=72.2

Q ss_pred             cEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCCE
Q 047486           60 TDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATE  139 (776)
Q Consensus        60 ~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  139 (776)
                      ++++++++.++ .+|..+.  ++|++|++++| .+. .+|..     +..+++|++|++++|.+++..+..|.++++|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n-~i~-~ip~~-----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGN-QFT-LVPKE-----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSS-CCC-SCCGG-----GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCC-cCc-hhHHH-----hhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            45566666555 4444332  35566666665 444 33432     444444666666666666555555666666666


Q ss_pred             EEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCC
Q 047486          140 IAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLN  196 (776)
Q Consensus       140 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  196 (776)
                      |+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            666666666555556666666666666666666444445556666666666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.4e-13  Score=129.63  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             CCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486          399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG  478 (776)
Q Consensus       399 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  478 (776)
                      .+.++++++.+. .+|..+.   ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            456777777776 5664432   368888888888877777777888888888888888887777777888888888888


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCC
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLP  537 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p  537 (776)
                      +|++++..+..+..+++|++|++++|++.+..+..  +..+++|+.|++++|.+.+..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHH--hcCCcccCEEEecCCCeeccCc
Confidence            88888777777788888888888888887544332  2567888888888888876544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=3.3e-13  Score=127.07  Aligned_cols=112  Identities=23%  Similarity=0.269  Sum_probs=54.5

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEE
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD  452 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  452 (776)
                      ++++.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..|..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            3444455555555444444455555555555555555522222222332 455555555555544444455555555555


Q ss_pred             cCCCcCcCCCChhhhcCCCCcEEEcCCCccCcc
Q 047486          453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDS  485 (776)
Q Consensus       453 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  485 (776)
                      +++|++++..+..+..+++|+.|++++|++.+.
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            555555544444444455555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.2e-13  Score=128.72  Aligned_cols=90  Identities=21%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccC
Q 047486          584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  663 (776)
Q Consensus       584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  663 (776)
                      +.++.|+|++|++++..|..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            46789999999999999999999999999999999999888888999999999999999999888888999999999999


Q ss_pred             ccCcceecCC
Q 047486          664 SYNRLWGRIP  673 (776)
Q Consensus       664 s~N~l~g~iP  673 (776)
                      ++|++.+..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999986544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=4.4e-13  Score=125.32  Aligned_cols=88  Identities=22%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccC
Q 047486          584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  663 (776)
Q Consensus       584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  663 (776)
                      +.++.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|.++++|++|||++|++++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            46789999999999999999999999999999999999877777899999999999999999877777999999999999


Q ss_pred             ccCcceec
Q 047486          664 SYNRLWGR  671 (776)
Q Consensus       664 s~N~l~g~  671 (776)
                      ++|++.+.
T Consensus       113 ~~N~~~c~  120 (174)
T 2r9u_A          113 YNNPWDCE  120 (174)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCcccc
Confidence            99999754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=3.4e-15  Score=143.58  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             hcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCC-ccccccCCCcEEeccCccCcCCCchh----------
Q 047486          583 LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQ----------  651 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------  651 (776)
                      ++.|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            4566777777777775 34 57777888888888888875332 46777888888888888887665542          


Q ss_pred             hccccccccccCccCcce
Q 047486          652 LLSVTALALLNLSYNRLW  669 (776)
Q Consensus       652 l~~l~~L~~L~ls~N~l~  669 (776)
                      +..+++|++||  +|+++
T Consensus       170 ~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          170 VKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHCSSCSEEC--CGGGT
T ss_pred             HHhCCCcEEEC--CcccC
Confidence            67777777776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=3.9e-13  Score=126.33  Aligned_cols=136  Identities=16%  Similarity=0.191  Sum_probs=103.3

Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCC
Q 047486          392 SICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK  471 (776)
Q Consensus       392 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  471 (776)
                      .+.++++|++|++++|.+. .+|. +....++|++|++++|.+++.  ..|..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4566778888888888887 5554 445544788888888888875  67888888999999999888766666788889


Q ss_pred             CcEEEcCCCccCcccch--hhcCCCCcCEEEccCCcccccCCCC--CCCcCCCCccEEeCCCCcCC
Q 047486          472 LEVVNVGKNMISDSFPC--WLGSLHELKILVLRSNRFYGPLCNS--NITFPFQALRIIDLSHNEFT  533 (776)
Q Consensus       472 L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~LdLs~n~l~  533 (776)
                      |++|++++|+++. +|.  .+..+++|++|++++|++... +..  .....+++|+.||+++|...
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999988864 444  778888899999998888643 221  01356788889988888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=4e-13  Score=126.26  Aligned_cols=107  Identities=23%  Similarity=0.253  Sum_probs=57.6

Q ss_pred             CCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCcc
Q 047486          207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLK  286 (776)
Q Consensus       207 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~  286 (776)
                      +|++|++++|.+++.  ..+..+++|++|++++|.++ .++...+..+++|++|++++|.+..++..   ..+..+++|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDL---DPLASLKSLT  116 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGG---GGGGGCTTCC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhh---HhhhcCCCCC
Confidence            344444444444322  34455566666666666665 34434445566666666666665444331   1223455566


Q ss_pred             EEeccCCCCCCcchh----hhCCcccceEecccCccc
Q 047486          287 VLRFAYCNITEFPGF----LRNSEELYLLDLSNNRIQ  319 (776)
Q Consensus       287 ~L~l~~n~l~~lp~~----l~~~~~L~~L~L~~n~l~  319 (776)
                      +|++++|.++.+|..    +..+++|+.|++++|...
T Consensus       117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666666555543    666677777777666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=2.6e-11  Score=129.89  Aligned_cols=80  Identities=16%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEcc
Q 047486          423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLR  502 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  502 (776)
                      +|+.+.+. +.++.+...+|.+|.+|+.++|.++ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++.
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence            45555443 2333344445555555555555432 33334445555555555555432 444444555555555555555


Q ss_pred             CCc
Q 047486          503 SNR  505 (776)
Q Consensus       503 ~n~  505 (776)
                      ++.
T Consensus       366 ~~~  368 (394)
T 4gt6_A          366 GSR  368 (394)
T ss_dssp             SCH
T ss_pred             Cce
Confidence            543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=3e-12  Score=119.25  Aligned_cols=105  Identities=20%  Similarity=0.225  Sum_probs=75.1

Q ss_pred             CCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486          399 LQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG  478 (776)
Q Consensus       399 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  478 (776)
                      .+.+++++|.++ .+|..+.   ++|++|++++|.|++..+..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456777777776 5665542   367777777777777777777777777777777777777666667777777777777


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCccc
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNRFY  507 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  507 (776)
                      +|++++..+..|..+++|++|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            77777666666666666666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=2.7e-14  Score=137.25  Aligned_cols=133  Identities=22%  Similarity=0.233  Sum_probs=87.7

Q ss_pred             hhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccCh
Q 047486          465 SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSM  544 (776)
Q Consensus       465 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l  544 (776)
                      .+..+++|++|++++|++++ +| .+..+++|++|++++|++.. +|..  ...+++|+.|++++|.+++ +| . +   
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~--~~~~~~L~~L~L~~N~l~~-l~-~-~---  111 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENL--DAVADTLEELWISYNQIAS-LS-G-I---  111 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSH--HHHHHHCSEEEEEEEECCC-HH-H-H---
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccch--hhcCCcCCEEECcCCcCCc-CC-c-c---
Confidence            55555555555555555554 33 45555555555555555542 2221  1234566777777777663 22 1 1   


Q ss_pred             HHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccch-hhhccCCCCCEEeCCCCcCccc
Q 047486          545 EAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGN  623 (776)
Q Consensus       545 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~  623 (776)
                                                          ..++.|+.|++++|++++..+ ..+..+++|+.|++++|.+++.
T Consensus       112 ------------------------------------~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          112 ------------------------------------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ------------------------------------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ------------------------------------ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence                                                125678899999999986443 5789999999999999999887


Q ss_pred             CCcc----------ccccCCCcEEeccCccCcC
Q 047486          624 IPVS----------FENMTALESLDLSFNKLDG  646 (776)
Q Consensus       624 ~p~~----------~~~l~~L~~L~Ls~N~l~~  646 (776)
                      +|..          +..+++|+.||  +|.++.
T Consensus       156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            7653          88899999998  677753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.35  E-value=1.2e-10  Score=124.78  Aligned_cols=330  Identities=10%  Similarity=0.063  Sum_probs=171.1

Q ss_pred             cccccccCCC-CCCEEEccCCcccCCCchhhcCCCCCCEEEccCCc---CCCCCCccccCCCCCCEEEccCCcCCCcCCC
Q 047486          126 SIPTSIGNLT-RATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNY---FQGGVPSWLFTLPSLLSIDLSKNMLNGPIDL  201 (776)
Q Consensus       126 ~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  201 (776)
                      +...+|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..|.   ++.....+|.++.+|+.+.+..+--.     
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~-----  127 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTE-----  127 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSE-----
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccce-----
Confidence            3344566663 4677776643 444555667777777777666543   44344455666666665555433211     


Q ss_pred             CCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccC
Q 047486          202 FQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYS  281 (776)
Q Consensus       202 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~  281 (776)
                                         ....+|..+.+|+.+.+..+ +. .+....|..+..|+.+.+..+ ++.+...+    + .
T Consensus       128 -------------------I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~a----F-~  180 (394)
T 4gt6_A          128 -------------------IDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERA----F-T  180 (394)
T ss_dssp             -------------------ECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTT----T-T
T ss_pred             -------------------ehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccc----c-c
Confidence                               22233444555555555432 22 334445555555555555433 22222211    1 1


Q ss_pred             CCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccC
Q 047486          282 LPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN  361 (776)
Q Consensus       282 l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  361 (776)
                      ...|+.+.+..+...--..++..+..+........... .+....+...........        .......+..+.+..
T Consensus       181 ~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ip~  251 (394)
T 4gt6_A          181 GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALI--------RYPSQREDPAFKIPN  251 (394)
T ss_dssp             TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEE--------ECCTTCCCSEEECCT
T ss_pred             ccceeEEEECCcccccccchhhhccccceecccccccc-cccceeeccccccccccc--------ccccccccceEEcCC
Confidence            23344444433221111223444555554444333221 111111111000000000        000011122222221


Q ss_pred             c--ccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCc
Q 047486          362 N--RIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH  439 (776)
Q Consensus       362 n--~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~  439 (776)
                      .  .+....+..+..|+.+.+.++.. .....+|.+++.|+.+.+.. .+. .+++..+..+.+|+.+++.++ ++.+..
T Consensus       252 ~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~  327 (394)
T 4gt6_A          252 GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILD  327 (394)
T ss_dssp             TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             cceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehH
Confidence            1  12233455567777777765543 35567788999999999964 455 566655555558999999864 777778


Q ss_pred             ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486          440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR  505 (776)
Q Consensus       440 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  505 (776)
                      .+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++...   ...+..+.+|+.+.+..+.
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence            89999999999999765 77677789999999999999887643   2456677778777776554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=5.5e-12  Score=117.87  Aligned_cols=104  Identities=21%  Similarity=0.266  Sum_probs=76.4

Q ss_pred             CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCC
Q 047486          400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGK  479 (776)
Q Consensus       400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  479 (776)
                      +.+++++|.+. .+|..+.   ++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            57778877776 6776543   4688888888888877777787888888888888888776666677777788888887


Q ss_pred             CccCcccchhhcCCCCcCEEEccCCccc
Q 047486          480 NMISDSFPCWLGSLHELKILVLRSNRFY  507 (776)
Q Consensus       480 n~l~~~~~~~~~~l~~L~~L~L~~n~l~  507 (776)
                      |++++..+..|..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7777666656666666666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=8.1e-13  Score=139.49  Aligned_cols=85  Identities=16%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             CccEEECCCCcCCccCcccc-cCCCCccEEEcCCCcCcCCCChhh-----hcCCCCcEEEcCCCccCcc----cchhhcC
Q 047486          423 ELITLHLKNNSLEGHIHDTF-ANASHLRSLDLNSNKLEGPLPRSL-----AKCIKLEVVNVGKNMISDS----FPCWLGS  492 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~  492 (776)
                      +|++|+|++|.++......+ ..+++|+.|+|++|.++......+     ...++|++|+|++|.++..    ++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            45555555555443221111 123455666666666554333222     2345667777777766542    3334456


Q ss_pred             CCCcCEEEccCCccc
Q 047486          493 LHELKILVLRSNRFY  507 (776)
Q Consensus       493 l~~L~~L~L~~n~l~  507 (776)
                      +++|++|+|++|.+.
T Consensus       182 ~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          182 NTSVTHLSLLHTGLG  196 (372)
T ss_dssp             CSSCCEEECTTSSCH
T ss_pred             CCCcCEEeCCCCCCC
Confidence            677777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=7.5e-13  Score=139.75  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=88.0

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhc----cCCccEEEcCCCCCCccCCCCCC-CCCCCCEEeccCCCCccccCCCCCCCCC
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNL----SSTMTDLDLGGTRIKGNFPDDIF-RLPNLQILFLNLNSQLTGYLPKSNWSSP  106 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l----~~~L~~L~Ls~~~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~~~  106 (776)
                      ++|++|+|++|.++...+..+...    +++|++|+|++|.+.......+. .+++|++|+|++| .+++.....+.. .
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~-~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD-L  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH-H
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH-H
Confidence            456666666666655433333322    13566666666665433222221 2445666666666 554322111100 0


Q ss_pred             c-ccCCCCcEEEccCCcccc----cccccccCCCCCCEEEccCCcccCC----CchhhcCCCCCCEEEccCCcCCCC---
Q 047486          107 L-RELDLLSVLDIGFCNFTG----SIPTSIGNLTRATEIAFASNHFTGQ----LPHHVSGLSYLTTFDLSGNYFQGG---  174 (776)
Q Consensus       107 l-~~L~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~---  174 (776)
                      + .....|++|+|++|.++.    .++..+..+++|++|+|++|.++..    ++..+...++|++|+|++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            0 112336777777776654    2333445667777777777776542    234555666777777777777642   


Q ss_pred             -CCccccCCCCCCEEEccCCcCCC
Q 047486          175 -VPSWLFTLPSLLSIDLSKNMLNG  197 (776)
Q Consensus       175 -~~~~l~~l~~L~~L~l~~n~l~~  197 (776)
                       ++.++...++|++|++++|.++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCH
Confidence             23344456777777777777653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=6e-11  Score=124.88  Aligned_cols=80  Identities=20%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             EecCCC-cccccchhhhccCCCCCEEeCCC-CcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccC
Q 047486          589 MDFSRN-RFHGEIPEVLGNFKSLKVLNLSH-NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  666 (776)
Q Consensus       589 L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  666 (776)
                      ++++++ ++++ +|. +..+++|+.|+|++ |.|++..|..|+++++|+.|||++|+|++..|..|..+++|++|+|++|
T Consensus        13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 4542 444 55555555555553 5555555555555555555555555555555555555555555555555


Q ss_pred             ccee
Q 047486          667 RLWG  670 (776)
Q Consensus       667 ~l~g  670 (776)
                      +|++
T Consensus        91 ~l~~   94 (347)
T 2ifg_A           91 ALES   94 (347)
T ss_dssp             CCSC
T ss_pred             ccce
Confidence            5553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.11  E-value=5.7e-09  Score=111.11  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=39.5

Q ss_pred             CccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcC
Q 047486          390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC  469 (776)
Q Consensus       390 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  469 (776)
                      ..+|.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++.+...+|.+|.+|+.+.|..+ ++.+...+|.+|
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            344455555555555432 22 233322222234555555554454444455555555555555432 333334455555


Q ss_pred             CCCcEEEcC
Q 047486          470 IKLEVVNVG  478 (776)
Q Consensus       470 ~~L~~L~L~  478 (776)
                      ++|+.+.+.
T Consensus       333 ~~L~~i~ip  341 (379)
T 4h09_A          333 KALSTISYP  341 (379)
T ss_dssp             TTCCCCCCC
T ss_pred             CCCCEEEEC
Confidence            555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.09  E-value=1.4e-08  Score=108.19  Aligned_cols=147  Identities=14%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEc
Q 047486          301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLV  380 (776)
Q Consensus       301 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l  380 (776)
                      .+..+..|+.+.+..+ +. .+....|.++..|+.+.+..+ ++.+..                  ..+..+..++.+.+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~------------------~aF~~~~~l~~i~l  270 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGS------------------FLLQNCTALKTLNF  270 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECT------------------TTTTTCTTCCEEEE
T ss_pred             ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCc------------------cccceeehhccccc
Confidence            3444555555555433 22 344444455555555555433 332222                  22333445555555


Q ss_pred             cCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcC
Q 047486          381 SNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG  460 (776)
Q Consensus       381 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  460 (776)
                      ..+ +......+|.+|++|+.+.+.++.+. .+++..+..+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.
T Consensus       271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~  346 (379)
T 4h09_A          271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL  346 (379)
T ss_dssp             CCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred             ccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence            432 33345567788888888888887776 555544444447888888754 66677788999999999988765 665


Q ss_pred             CCChhhhcCCCC
Q 047486          461 PLPRSLAKCIKL  472 (776)
Q Consensus       461 ~~~~~l~~l~~L  472 (776)
                      +...+|.+|..+
T Consensus       347 I~~~aF~~c~~~  358 (379)
T 4h09_A          347 IESGAFEGSSIT  358 (379)
T ss_dssp             ECTTTTTTSSCC
T ss_pred             EchhHhhCCCCC
Confidence            666778777543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=5.2e-10  Score=117.65  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             EEccCC-cCccCCCccccCCCCCCEEEccC-CcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCC
Q 047486          378 LLVSNN-KLSGKIPPSICSLSSLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS  455 (776)
Q Consensus       378 L~l~~n-~l~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  455 (776)
                      ++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..+..+. +|+.|+|++|+|+++.+..|.++++|+.|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            344444 343 2333 44444444444443 444422223333332 444444444444444444444444444444444


Q ss_pred             CcCcCCCChhhhcCCCCcEEEcCCCccC
Q 047486          456 NKLEGPLPRSLAKCIKLEVVNVGKNMIS  483 (776)
Q Consensus       456 n~l~~~~~~~l~~l~~L~~L~L~~n~l~  483 (776)
                      |++++..+..|..++ |+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            444443333333333 444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=2.3e-09  Score=111.92  Aligned_cols=83  Identities=12%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             hcceeEEecCCCcccccchhhhc---cCCCCCEEeCCCCcCccc----CCccccccCCCcEEeccCccCcCCCchhhcc-
Q 047486          583 LVMFRAMDFSRNRFHGEIPEVLG---NFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQLLS-  654 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-  654 (776)
                      ++.|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            45667777777776654443333   467788888888887753    3344456778888888888776433333332 


Q ss_pred             ccccccccCccCc
Q 047486          655 VTALALLNLSYNR  667 (776)
Q Consensus       655 l~~L~~L~ls~N~  667 (776)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            1  2345555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=1.1e-08  Score=106.74  Aligned_cols=162  Identities=17%  Similarity=0.179  Sum_probs=98.5

Q ss_pred             ccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhc--CCCCcCEEEccC--CcccccC-----
Q 047486          440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG--SLHELKILVLRS--NRFYGPL-----  510 (776)
Q Consensus       440 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~~-----  510 (776)
                      ..+..+++|+.|.|++|.-. .++. + .+++|+.|++..|.+.......+.  .+++|+.|+|+.  |...+..     
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            44556677777777666311 1222 2 267777777777776654444443  677788877753  2211110     


Q ss_pred             CCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEe
Q 047486          511 CNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD  590 (776)
Q Consensus       511 ~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  590 (776)
                      ........+++|+.|++++|.+++..+..++..                                     ..++.|+.|+
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-------------------------------------~~~~~L~~Ld  285 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-------------------------------------DILPQLETMD  285 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-------------------------------------SSGGGCSEEE
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-------------------------------------ccCCCCCEEE
Confidence            001111346889999998888764322111100                                     0157889999


Q ss_pred             cCCCccccc----chhhhccCCCCCEEeCCCCcCcccCCccccc-cCCCcEEeccCcc
Q 047486          591 FSRNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSFEN-MTALESLDLSFNK  643 (776)
Q Consensus       591 Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~  643 (776)
                      |+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...+|++.++
T Consensus       286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            999999875    3444567899999999999988654444443 2  3568999887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=1.6e-07  Score=92.72  Aligned_cols=67  Identities=30%  Similarity=0.315  Sum_probs=43.9

Q ss_pred             ccCCCCCEEeCCCCcCcc--cCCccccccCCCcEEeccCccCcCCCchhhcccc--ccccccCccCcceecCC
Q 047486          605 GNFKSLKVLNLSHNSLTG--NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVT--ALALLNLSYNRLWGRIP  673 (776)
Q Consensus       605 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~g~iP  673 (776)
                      .++++|+.|+|++|+|++  .+|..+..+++|+.|||++|++++.  +.+..+.  .|+.|+|++|++++.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            456777777777777776  3455666777777777777777654  2333443  67777777777776655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=5.5e-07  Score=88.86  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=67.0

Q ss_pred             HhhcceeEEecCCCcccc--cchhhhccCCCCCEEeCCCCcCcccCCccccccC--CCcEEeccCccCcCCCch------
Q 047486          581 KILVMFRAMDFSRNRFHG--EIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT--ALESLDLSFNKLDGRIPE------  650 (776)
Q Consensus       581 ~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------  650 (776)
                      ..++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            347899999999999998  5567888999999999999999975  3455555  999999999999987763      


Q ss_pred             -hhcccccccccc
Q 047486          651 -QLLSVTALALLN  662 (776)
Q Consensus       651 -~l~~l~~L~~L~  662 (776)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             467788888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=2.9e-07  Score=86.47  Aligned_cols=92  Identities=15%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             cccCCCCCCEEEccCC-cCccc----CCchhhhcCCCccEEECCCCcCCcc----CcccccCCCCccEEEcCCCcCcCC-
Q 047486          392 SICSLSSLQYLSLSDN-NLSGT----IPPCLGNFSTELITLHLKNNSLEGH----IHDTFANASHLRSLDLNSNKLEGP-  461 (776)
Q Consensus       392 ~~~~~~~L~~L~Ls~n-~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-  461 (776)
                      .+...+.|++|+|++| .+...    +...+... ++|++|+|++|.|...    +...+...++|++|+|++|.|+.. 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            3445566666666666 55432    11222222 2455566655555432    122333445555555555555432 


Q ss_pred             ---CChhhhcCCCCcEEEc--CCCccCc
Q 047486          462 ---LPRSLAKCIKLEVVNV--GKNMISD  484 (776)
Q Consensus       462 ---~~~~l~~l~~L~~L~L--~~n~l~~  484 (776)
                         +...+...++|++|+|  ++|.+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence               2334444555555555  4555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.28  E-value=1.4e-07  Score=88.61  Aligned_cols=122  Identities=15%  Similarity=0.106  Sum_probs=77.8

Q ss_pred             hhHhhcCCCCCCEEeCCCc-cCCCCC----hhhHhhccCCccEEEcCCCCCCcc----CCCCCCCCCCCCEEeccCCCCc
Q 047486           24 FDLLASNLTKLSLLHLGAT-NMSLIK----PFSLLNLSSTMTDLDLGGTRIKGN----FPDDIFRLPNLQILFLNLNSQL   94 (776)
Q Consensus        24 ~~~~l~~l~~L~~L~L~~~-~~~~~~----~~~~~~l~~~L~~L~Ls~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~   94 (776)
                      +...+...++|++|+|++| .+....    ...+... ++|++|+|++|.+...    +...+...++|++|+|++| .+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i  105 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI  105 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence            4456667788888888887 776542    2334444 6788888888877543    2334445677888888888 66


Q ss_pred             cccCCCCCCCCCcccCCCCcEEEc--cCCccccc----ccccccCCCCCCEEEccCCccc
Q 047486           95 TGYLPKSNWSSPLRELDLLSVLDI--GFCNFTGS----IPTSIGNLTRATEIAFASNHFT  148 (776)
Q Consensus        95 ~~~~p~~~~~~~l~~L~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  148 (776)
                      .+.-...+. ..+...+.|++|+|  ++|.+...    +...+...+.|++|++++|.+.
T Consensus       106 ~~~g~~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          106 SGSGILALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CHHHHHHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CHHHHHHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            543111110 11444555888888  77888754    3345556688999999888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=4e-06  Score=76.44  Aligned_cols=82  Identities=12%  Similarity=0.024  Sum_probs=57.5

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCchhhcCC----CCCCEEEccCCc-CCCCCCccccCCCCCC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGL----SYLTTFDLSGNY-FQGGVPSWLFTLPSLL  186 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L~  186 (776)
                      |++||+++|.++...-..+..|++|++|+|++|. +++..-..++.+    ++|++|+|++|. +++.--..+..+++|+
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~  142 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK  142 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence            7788888877776656667778888888888874 654444455554    368888888874 6654445566778888


Q ss_pred             EEEccCCc
Q 047486          187 SIDLSKNM  194 (776)
Q Consensus       187 ~L~l~~n~  194 (776)
                      +|++++|.
T Consensus       143 ~L~L~~c~  150 (176)
T 3e4g_A          143 YLFLSDLP  150 (176)
T ss_dssp             EEEEESCT
T ss_pred             EEECCCCC
Confidence            88887774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.85  E-value=4.6e-06  Score=76.05  Aligned_cols=83  Identities=12%  Similarity=0.097  Sum_probs=53.9

Q ss_pred             CccEEECCCCcCCccCcccccCCCCccEEEcCCCc-CcCCCChhhhcC----CCCcEEEcCCCc-cCcccchhhcCCCCc
Q 047486          423 ELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNK-LEGPLPRSLAKC----IKLEVVNVGKNM-ISDSFPCWLGSLHEL  496 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L  496 (776)
                      .|+.||+++|.|+...-..+..+++|+.|+|++|. +++..-..+..+    ++|+.|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47777777777665555556677777777777774 554333344443    467788887764 766555566667777


Q ss_pred             CEEEccCCc
Q 047486          497 KILVLRSNR  505 (776)
Q Consensus       497 ~~L~L~~n~  505 (776)
                      ++|++++++
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.10  E-value=0.00035  Score=64.86  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=27.0

Q ss_pred             CCCCCCEEEccCC-cCccc----CCchhhhcCCCccEEECCCCcCCcc----CcccccCCCCccEEEcCCCcCc
Q 047486          395 SLSSLQYLSLSDN-NLSGT----IPPCLGNFSTELITLHLKNNSLEGH----IHDTFANASHLRSLDLNSNKLE  459 (776)
Q Consensus       395 ~~~~L~~L~Ls~n-~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  459 (776)
                      +-+.|++|+|++| .+...    +.+.+.... .|+.|+|++|.|...    +...+..-+.|+.|+|++|.|.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3445555666553 44321    122222222 455555555555421    1222333344555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.85  E-value=0.00031  Score=65.24  Aligned_cols=120  Identities=14%  Similarity=0.069  Sum_probs=60.8

Q ss_pred             hHhhcCCCCCCEEeCCCc-cCCCC----ChhhHhhccCCccEEEcCCCCCCccCCCC----CCCCCCCCEEeccCCCCcc
Q 047486           25 DLLASNLTKLSLLHLGAT-NMSLI----KPFSLLNLSSTMTDLDLGGTRIKGNFPDD----IFRLPNLQILFLNLNSQLT   95 (776)
Q Consensus        25 ~~~l~~l~~L~~L~L~~~-~~~~~----~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~----l~~l~~L~~L~Ls~n~~~~   95 (776)
                      ...+.+-+.|++|+|+++ .+...    +.+.+..- +.|++|+|++|.|......+    +..-+.|++|+|++| .+.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig  111 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT  111 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence            344455566666776664 55432    22333333 56677777776665432222    233456777777776 554


Q ss_pred             ccCCCCCCCCCcccCCCCcEEEccCC---cccc----cccccccCCCCCCEEEccCCcc
Q 047486           96 GYLPKSNWSSPLRELDLLSVLDIGFC---NFTG----SIPTSIGNLTRATEIAFASNHF  147 (776)
Q Consensus        96 ~~~p~~~~~~~l~~L~~L~~L~Ls~n---~l~~----~~~~~l~~l~~L~~L~L~~n~l  147 (776)
                      +.--..+.. .++.=+.|++|+|+++   .+..    .+...+..-+.|+.|+++.|.+
T Consensus       112 ~~Ga~ala~-aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          112 PELLARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHH-HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            321111110 0122223777777654   2332    2334455557777787776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.75  E-value=0.0016  Score=56.38  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=43.6

Q ss_pred             eEEecCCCccc-ccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcC
Q 047486          587 RAMDFSRNRFH-GEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG  646 (776)
Q Consensus       587 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  646 (776)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            47888888886 35554432  368888888888887777778888888888888888763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.59  E-value=0.003  Score=54.70  Aligned_cols=57  Identities=25%  Similarity=0.304  Sum_probs=47.9

Q ss_pred             CEEeCCCCcCc-ccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcce
Q 047486          611 KVLNLSHNSLT-GNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW  669 (776)
Q Consensus       611 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  669 (776)
                      ..++-+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 35675543  47999999999999877888999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	776
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-15
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 5e-20
 Identities = 76/443 (17%), Positives = 132/443 (29%), Gaps = 73/443 (16%)

Query: 200 DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQF 259
            +F      + ++    +   T   S   L  +T L      +      D    L  L  
Sbjct: 14  QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQ 70

Query: 260 LDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
           ++ SNN L   T          L +L  L     N  +       +    L  L+    Q
Sbjct: 71  INFSNNQLTDIT---------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 121

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLL 379
                              SN       L    ++  L   N       L    + + L 
Sbjct: 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 181

Query: 380 VSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIH 439
           +S+NK        +  L++L+ L  ++N +S   P       T L  L L  N L+    
Sbjct: 182 ISSNK--VSDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--I 234

Query: 440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL 499
            T A+ ++L  LDL +N++    P  L+   KL  + +G N IS+  P    +       
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNL-- 290

Query: 500 VLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 559
                     L + +     + L  + L  N  +   P      ++              
Sbjct: 291 ----ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ-------------- 332

Query: 560 GGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNS 619
                                        + F+ N+        L N  ++  L+  HN 
Sbjct: 333 ----------------------------RLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 620 LTGNIPVSFENMTALESLDLSFN 642
           ++   P    N+T +  L L+  
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 89.3 bits (220), Expect = 2e-19
 Identities = 71/415 (17%), Positives = 130/415 (31%), Gaps = 50/415 (12%)

Query: 252 SKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLL 311
           + L +     L   ++    S  +      L  +  L+     I    G +     L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD------LDQVTTLQADRLGIKSIDG-VEYLNNLTQI 71

Query: 312 DLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVP 371
           + SNN++      +D    K+L  L         I     +   T           I   
Sbjct: 72  NFSNNQL------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 125

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
            P   +  ++  +LS      I +LS L  L         T    L N +T        N
Sbjct: 126 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 185

Query: 432 NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491
                      A  ++L SL   +N++    P  +     L+ +++  N + D     L 
Sbjct: 186 KV---SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLA 238

Query: 492 SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
           SL  L  L L +N+       S +T     L  + L  N+ +   P     ++  ++  +
Sbjct: 239 SLTNLTDLDLANNQISNLAPLSGLT----KLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 552 EQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK 611
                                Q  D      L     +    N      P  + +   L+
Sbjct: 295 --------------------NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 612 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN 666
            L  ++N ++     S  N+T +  L    N++    P  L ++T +  L L+  
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 62/379 (16%), Positives = 126/379 (33%), Gaps = 46/379 (12%)

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
           L   +   L K  +   +    L + +  ++ +   I+ +I    + L NLT ++ S+N 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIK-SIDGVEY-LNNLTQINFSNNQ 77

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           L+        +KL  +   +     +    +  N++      +         N+T     
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS---------NNFMTHIELHPWM 352
             +S  +  +   +     +     +         +L+         N       L    
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 353 NITTLDLRNNRIQGSI-LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSG 411
           N+ +L   NN+I     L    +   L ++ N+L      ++ SL++L  L L++N +S 
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255

Query: 412 TIPPCLGNFSTELITLHLKNNSLEGHI--------------------HDTFANASHLRSL 451
             P       T+L  L L  N +                            +N  +L  L
Sbjct: 256 LAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 452 DLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLC 511
            L  N +    P  ++   KL+ +    N +SD     L +L  +  L    N+      
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

Query: 512 NSNITFPFQALRIIDLSHN 530
            +N+T     +  + L+  
Sbjct: 369 LANLT----RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 1e-16
 Identities = 74/411 (18%), Positives = 124/411 (30%), Gaps = 53/411 (12%)

Query: 29  SNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL 88
           + L +     LG TN++     + L+    +T L      IK    D +  L NL  +  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKS--IDGVEYLNNLTQINF 73

Query: 89  NLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFT 148
           + N QLT   P  N +  L ++ + +               +   L              
Sbjct: 74  SNN-QLTDITPLKNLTK-LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 149 GQLPHHVSGLSYLTTFDLSGNYFQG------GVPSWLFTLPSLLSIDLSKNMLNGPIDLF 202
             L       + ++                    + L  L +L +++      N   D+ 
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 203 QLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDL 262
            L        L     + +       L NL  L L+ N L         + L  L  LDL
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDL 248

Query: 263 SNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRI 322
           +NN + +                                L    +L  L L  N+I    
Sbjct: 249 ANNQISNLAP-----------------------------LSGLTKLTELKLGANQISNIS 279

Query: 323 SKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI-LVPPPSTKVLLVS 381
             +              N       +    N+T L L  N I     +      + L  +
Sbjct: 280 PLAGLTALT--NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFA 337

Query: 382 NNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN 432
           NNK+S     S+ +L+++ +LS   N +S   P  L N  T +  L L + 
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL-TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 2e-14
 Identities = 65/339 (19%), Positives = 126/339 (37%), Gaps = 40/339 (11%)

Query: 1   MSHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMT 60
           + +L+ LT ++ S   LT      +L  + L  + + +    +++ +   + L   +   
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNL--TKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 61  DLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGF 120
           +       +K     +   L +  I  ++  S LT     S  +       L ++  +  
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 121 CNFTGS---IPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPS 177
            + + +     + +  LT    +   +N  +   P  +   + L    L+GN  +     
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IG 235

Query: 178 WLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIP-------------- 223
            L +L +L  +DL+ N ++    L  L   L +++L  N+I    P              
Sbjct: 236 TLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 224 ------NSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANIS 277
                 +    L NLT L L  NN+S        S L KLQ L  +NN +   +S AN  
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVSSLAN-- 349

Query: 278 IKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNN 316
               L ++  L   +  I++    L N   +  L L++ 
Sbjct: 350 ----LTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 66/365 (18%), Positives = 121/365 (33%), Gaps = 47/365 (12%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFS------LLNL 55
           + L ++T L      +     + D +   L  L+ ++     ++ I P         + +
Sbjct: 41  TDLDQVTTLQADRLGIK----SIDGV-EYLNNLTQINFSNNQLTDITPLKNLTKLVDILM 95

Query: 56  SSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSV 115
           ++           +       +F      I  L   + L      SN  S +  L  L+ 
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155

Query: 116 LDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGV 175
           L         +    + NLT    +  +SN         ++ L+ L +   + N      
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDIT 213

Query: 176 PSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTIL 235
           P  +    +L  + L+ N L     L  L N L D+ L  N+I    P S   L  LT L
Sbjct: 214 PLGIL--TNLDELSLNGNQLKDIGTLASLTN-LTDLDLANNQISNLAPLS--GLTKLTEL 268

Query: 236 DLSSNNLSGAIRFDQFSK-------------------LKKLQFLDLSNNSLLSFTSSANI 276
            L +N +S        +                    LK L +L L  N++   +  ++ 
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS- 327

Query: 277 SIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDL 336
                L  L+ L FA   +++    L N   +  L   +N+I      +       +  L
Sbjct: 328 -----LTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA---NLTRITQL 378

Query: 337 DLSNN 341
            L++ 
Sbjct: 379 GLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.1 bits (214), Expect = 3e-19
 Identities = 55/262 (20%), Positives = 87/262 (33%), Gaps = 8/262 (3%)

Query: 395 SLSSLQYLSLSDNNLSG--TIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLD 452
               +  L LS  NL     IP  L N            N+L G I    A  + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 453 LNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
           +    + G +P  L++   L  ++   N +S + P  + SL  L  +    NR  G + +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 513 SNITFPFQALRIIDLSHN-----EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 567
           S  +F      +    +        T       F  +       +   L           
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 627
           +       D     +      +D   NR +G +P+ L   K L  LN+S N+L G IP  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 628 FENMTALESLDLSFNKLDGRIP 649
             N+   +    + NK     P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 47/267 (17%), Positives = 71/267 (26%), Gaps = 53/267 (19%)

Query: 219 RGTIPNSTFQLVNLTILDLSSNNLSGAIRF-DQFSKLKKLQFLDLSNNSLLSFTSSANIS 277
            G + ++  Q   +  LDLS  NL          + L  L FL +   + L       I+
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 278 IKYSLPSLKVLRFAYCN----------------------ITEFPGFLRNSEELYLLDLSN 315
               L  L +                                 P  + +   L  +    
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 316 NRIQGRISKSDSPGWKSLIDLDLSNN----------------------------FMTHIE 347
           NRI G I  S     K    + +S N                                  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
                    L   +       +    +   L + NN++ G +P  +  L  L  L++S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 408 NLSGTIPPCLGNFSTELITLHLKNNSL 434
           NL G IP   GN           NN  
Sbjct: 279 NLCGEIPQ-GGNLQR-FDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.2 bits (152), Expect = 2e-11
 Identities = 59/305 (19%), Positives = 100/305 (32%), Gaps = 37/305 (12%)

Query: 121 CNFTGSIPTSIGNLTRATEIAFASNHFTG--QLPHHVSGLSYLTTFDLSGNY-FQGGVPS 177
             + G +  +     R   +  +  +      +P  ++ L YL    + G     G +P 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 178 WLFTLPSLLSIDLSKNMLNGPID-LFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILD 236
            +  L  L  + ++   ++G I        +L  +    N + GT+P S   L NL  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNIT 296
              N +SGAI     S  K    + +S N L         ++  +   L           
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 297 EFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITT 356
            F                                   I L  ++      ++    N+  
Sbjct: 216 LFGSD---------------------------KNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 357 LDLRNNRIQGSI---LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL--SG 411
           LDLRNNRI G++   L        L VS N L G+IP    +L      + ++N      
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

Query: 412 TIPPC 416
            +P C
Sbjct: 308 PLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 62/267 (23%), Positives = 102/267 (38%), Gaps = 9/267 (3%)

Query: 2   SHLSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTD 61
           +   ++ +LDLS   L         L +NL  L+ L++G  N  +      +   + +  
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 62  LDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
           L +  T + G  PD + ++  L  L  + N+              +  L  L  +     
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL------SGTLPPSISSLPNLVGITFDGN 159

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
             +G+IP S G+ ++       S +              L   DLS N  +G       +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
             +   I L+KN L   +    L  +L  + L  N I GT+P    QL  L  L++S NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLL 268
           L G I   Q   L++      +NN  L
Sbjct: 280 LCGEI--PQGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
           + LD+      G++P  +  L     +  + N+  G++P     L        + N    
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 174 GVP 176
           G P
Sbjct: 306 GSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 91  NSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQ 150
           N+++ G LP+      L +L  L  L++ F N  G IP   GNL R    A+A+N     
Sbjct: 253 NNRIYGTLPQG-----LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 151 LP 152
            P
Sbjct: 307 SP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 3e-15
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 30/298 (10%)

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
           ++  +   +  ++      PP T +L + NNK++        +L +L  L L +N +S  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 413 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL 472
            P        +L  L+L  N L+            LR  +    K+   +   L + I +
Sbjct: 71  SPGAFAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532
           E+        S         + +L  + +           +       +L  + L  N+ 
Sbjct: 130 ELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKI 183

Query: 533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFS 592
           T      +       K                       +   D          R +  +
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNS----------------ISAVDNGSLANTPHLRELHLN 227

Query: 593 RNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSF------ENMTALESLDLSFNKL 644
            N+   ++P  L + K ++V+ L +N+++      F          +   + L  N +
Sbjct: 228 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.3 bits (181), Expect = 6e-15
 Identities = 54/302 (17%), Positives = 89/302 (29%), Gaps = 43/302 (14%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L      LDL   +I      D   L NL                              
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLH----------------------------- 58

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
             L +     +   P +   L +   +  + N            L  L   +      + 
Sbjct: 59  -TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLT 233
            V + L  +  +                FQ    L  +R+ +  I  TIP       +LT
Sbjct: 118 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLT 174

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
            L L  N ++          L  L  L LS N      S+ +     + P L+ L     
Sbjct: 175 ELHLDGNKITKVD-AASLKGLNNLAKLGLSFN----SISAVDNGSLANTPHLRELHLNNN 229

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSP-----GWKSLIDLDLSNNFMTHIEL 348
            + + PG L + + + ++ L NN I    S    P        S   + L +N + + E+
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 349 HP 350
            P
Sbjct: 290 QP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 63/309 (20%), Positives = 103/309 (33%), Gaps = 32/309 (10%)

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
            +P  +        +   +N  T         L  L T  L  N      P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
             + LSKN L    +  ++P +LQ++R+ ENEI     +    L  + +++L +N L  +
Sbjct: 82  ERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 246 IRF-DQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF-PGFLR 303
                 F  +KKL ++ +++ ++ +             PSL  L      IT+     L+
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGL-------PPSLTELHLDGNKITKVDAASLK 192

Query: 304 NSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW--MNITTLDLRN 361
               L  L LS N I              L +L L+NN +  +         I  + L N
Sbjct: 193 GLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 362 NRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS-GTIPPCLGNF 420
           N I                +        P      +S   +SL  N +    I P     
Sbjct: 252 NNIS---------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 421 STELITLHL 429
                 + L
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 4e-13
 Identities = 48/270 (17%), Positives = 84/270 (31%), Gaps = 21/270 (7%)

Query: 7   LTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLG 65
              LDL    +T I+   F     NL  L  L L    +S I P +   L   +  L L 
Sbjct: 33  TALLDLQNNKITEIKDGDF----KNLKNLHTLILINNKISKISPGAFAPLVK-LERLYLS 87

Query: 66  GTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTG 125
             ++K         L  L++    +           N    +        L       +G
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-------LGTNPLKSSG 140

Query: 126 SIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSL 185
               +   + + + I  A  + T  +P  +     LT   L GN       + L  L +L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 186 LSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGA 245
             + LS N ++   +               N     +P        + ++ L +NN+S  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 246 IRFD-----QFSKLKKLQFLDLSNNSLLSF 270
              D       +K      + L +N +  +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 5e-08
 Identities = 38/251 (15%), Positives = 68/251 (27%), Gaps = 46/251 (18%)

Query: 446 SHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNR 505
                LDL +NK+             L  + +  N IS   P     L +L+ L L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYD 565
                    +             H      + + +F  +  M  V+              
Sbjct: 91  L------KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-------------- 130

Query: 566 ESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP 625
                                  +  +  +  G         K L  + ++  ++T    
Sbjct: 131 -----------------------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---T 164

Query: 626 VSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDS 685
           +      +L  L L  NK+       L  +  LA L LS+N +               + 
Sbjct: 165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224

Query: 686 YIGNIHLCGEP 696
           ++ N  L   P
Sbjct: 225 HLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 593 RNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL 652
            +    ++P+ L       +L+L +N +T      F+N+  L +L L  NK+    P   
Sbjct: 18  SDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 653 LSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPL 697
             +  L  L LS N+L     +  +              +     
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF 120

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 12/195 (6%)

Query: 522 LRIIDLSHNEFTGFLPRRIFPSMEAMKNVD--EQGRLEYMGGAFYDESITVAMQGHDFQL 579
             ++DL +N+ T  +    F +++ +  +        +   GAF        +     QL
Sbjct: 33  TALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 580 QKI----LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSH--NSLTGNIPVSFENMTA 633
           +++        + +    N        V      + V+ L       +G    +F+ M  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 634 LESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNIHLC 693
           L  + ++   +   IP+ L    +L  L+L  N++        +         +    + 
Sbjct: 152 LSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 694 GEPLTVRCSNDGLPE 708
                   +   L E
Sbjct: 209 AVDNGSLANTPHLRE 223

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (184), Expect = 6e-15
 Identities = 49/448 (10%), Positives = 101/448 (22%), Gaps = 22/448 (4%)

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
           +++  LD+    LS A   +    L++ Q + L +  L         S     P+L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 290 FAYCNITE------FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFM 343
                + +        G    S ++  L L N  + G      S   ++L  L   +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 344 THIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLS 403
             +       +    L        + +   S             +  P    L+      
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 404 LSDNNLSGTIPPCLGNFSTELITLHLKNNS----LEGHIHDTFANASHLRSLDLNSNKLE 459
                              E + L     +     +         +    +L  N     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 460 GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF 519
           G              +               G L  +                       
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 520 QALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQL 579
                +     +      +    +     +                 +  +   G     
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 580 QKILVMF---RAMDFSRNRFHGE----IPEVLGNFKSLKVLNLSHNSLTGNIPVSF---- 628
           Q +       R +  +           +   L    SL+ L+LS+N L     +      
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 629 -ENMTALESLDLSFNKLDGRIPEQLLSV 655
            +    LE L L        + ++L ++
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 587 RAMDFSRNRF-HGEIPEVLGNFKSLKVLNLSHNSLTG----NIPVSFENMTALESLDLSF 641
           +++D            E+L   +  +V+ L    LT     +I  +     AL  L+L  
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 642 NKLDGRIPEQLLSVTALALLNLSYNRLWG 670
           N+L       +L         +    L  
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 54/465 (11%), Positives = 125/465 (26%), Gaps = 25/465 (5%)

Query: 7   LTHLDLSFCVLTIEQRTFDLLAS--NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDL 64
           +  LD+    L+ + R  +LL        + L   G T        S L ++  + +L+L
Sbjct: 4   IQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 65  GGTRIKGNFPDDIFRL---PNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFC 121
               +       + +    P+ +I  L+L +           SS LR L  L  L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 122 NFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFT 181
               +    +       +                S     +      ++ +  V +    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 182 LPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNN 241
              +  +          ++  +L +         +        ++ + + L    L    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 242 LSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGF 301
           ++           +                      ++      ++         E    
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 302 LRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361
           L  +       L +  ++     +      S +           I  +        D   
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-----DAGV 357

Query: 362 NRIQGSILVPPPSTKVLLVSNNKLSGK----IPPSICSLSSLQYLSLSDNNLSGTIPPCL 417
             +   +  P    +VL +++  +S      +  ++ +  SL+ L LS+N L       L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 418 G----NFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
                     L  L L +      + D       L++L+ +   L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMED------RLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 202 FQLPNSLQDVRLEENEIRGT----IPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLK-- 255
            Q  + L+ + L + ++  +    +  +     +L  LDLS+N L  A        ++  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 256 --KLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
              L+ L L +            +++   PSL+V+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 609 SLKVLNLSHNSLTGN-IPVSFENMTALESLDLSFNKLDGR----IPEQLLSVTALALLNL 663
            ++ L++    L+          +   + + L    L       I   L    ALA LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 664 SYNRL 668
             N L
Sbjct: 63  RSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 184 SLLSIDLSKNMLN--GPIDLFQLPNSLQDVRLEENEIRG----TIPNSTFQLVNLTILDL 237
            + S+D+    L+     +L  L    Q VRL++  +       I ++      L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 238 SSNNLSGAIRFDQFSKLK----KLQFLDLSNN 265
            SN L           L+    K+Q L L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 14/112 (12%)

Query: 305 SEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRI 364
           S ++  LD+    +         P  +    + L +  +T        +     LR N  
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA----LRVN-- 54

Query: 365 QGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPC 416
                   P+   L + +N+L       +          +   +L       
Sbjct: 55  --------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 44/292 (15%), Positives = 81/292 (27%), Gaps = 22/292 (7%)

Query: 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIP 414
            T       +Q   +  P +++ + +  N++S     S  +  +L  L L  N L+    
Sbjct: 14  VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 415 PCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV 474
                 +         N  L      TF     L +L L+   L+   P        L+ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG 534
           + +  N +          L  L  L L  NR       +       +L  + L  N    
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH--SLDRLLLHQNRVAH 191

Query: 535 FLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRN 594
             P         M              A    ++          LQ +         + N
Sbjct: 192 VHPHAFRDLGRLMT---------LYLFANNLSALPTEALAPLRALQYL-------RLNDN 235

Query: 595 RFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDG 646
            +  +       +  L+    S + +  ++P         +   L+ N L G
Sbjct: 236 PWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 7e-13
 Identities = 50/254 (19%), Positives = 78/254 (30%), Gaps = 12/254 (4%)

Query: 293 CNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM 352
             +   P  +        + L  NRI    + S        I    SN            
Sbjct: 21  QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 353 NITTLDLRNNRIQGSILVPPPST------KVLLVSNNKLSGKIPPSICSLSSLQYLSLSD 406
                 L  +       V P +         L +    L    P     L++LQYL L D
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 407 NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSL 466
           N L         +    L  L L  N +       F     L  L L+ N++    P + 
Sbjct: 139 NALQALPDDTFRDL-GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 467 AKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIID 526
               +L  + +  N +S      L  L  L+ L L  N +   +C+      +  L+   
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW---VCDCRARPLWAWLQKFR 254

Query: 527 LSHNEFTGFLPRRI 540
            S +E    LP+R+
Sbjct: 255 GSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 42/257 (16%), Positives = 76/257 (29%), Gaps = 26/257 (10%)

Query: 7   LTHLDLSFCVLT-IEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLG 65
              + L    ++ +   +F         L++L L +  ++ I   +   L+         
Sbjct: 34  SQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 66  GTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL------------- 112
             +++   P     L  L  L L+               + L+ L L             
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 113 -----LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLS 167
                L+ L +     +     +   L     +    N      PH    L  L T  L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 168 GNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTF 227
            N         L  L +L  + L+ N          L   LQ  R   +E+  ++P    
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR-- 267

Query: 228 QLVNLTILDLSSNNLSG 244
            L    +  L++N+L G
Sbjct: 268 -LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 2e-11
 Identities = 57/269 (21%), Positives = 94/269 (34%), Gaps = 16/269 (5%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
            + +    + L G RI            NL IL+L+ N             + L +LD  
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD-- 86

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
                         P +   L R   +           P    GL+ L    L  N  Q 
Sbjct: 87  ---LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNL 232
                   L +L  + L  N ++  P   F+  +SL  + L +N +    P++   L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
             L L +NNLS  +  +  + L+ LQ+L L++N  +      +   +     L+  R + 
Sbjct: 204 MTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC-----DCRARPLWAWLQKFRGSS 257

Query: 293 CNIT-EFPGFLRNSEELYLLDLSNNRIQG 320
             +    P  L       L  L+ N +QG
Sbjct: 258 SEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 47/276 (17%), Positives = 70/276 (25%), Gaps = 47/276 (17%)

Query: 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL 453
           C        S     L   +P            + L  N +      +F    +L  L L
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 454 NSNKLEGPLPRSLAKCIKLEVVNVGKNM-ISDSFPCWLGSLHELKILVLRSNRFYGPLCN 512
           +SN L      +      LE +++  N  +    P     L  L  L L  +R       
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL--DRCGLQELG 121

Query: 513 SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAM 572
             +     AL+ + L  N                                          
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH------------------------ 157

Query: 573 QGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 632
                           +    NR             SL  L L  N +    P +F ++ 
Sbjct: 158 ----------------LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 633 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
            L +L L  N L     E L  + AL  L L+ N  
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 9/161 (5%)

Query: 522 LRIIDLSHNEFTGFLPRRI--FPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQL 579
            + I L  N  +           ++  +                    +       + QL
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 580 QKI-------LVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMT 632
           + +       L     +   R       P +     +L+ L L  N+L      +F ++ 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 633 ALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIP 673
            L  L L  N++          + +L  L L  NR+    P
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 32/276 (11%), Positives = 78/276 (28%), Gaps = 42/276 (15%)

Query: 187 SIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAI 246
           ++DL+   L+  +    L   +   R   + +   +    F    +  +DLS++ +  + 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST 62

Query: 247 RFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSE 306
                S+  KLQ L L    L    S   ++      +L  L  + C+            
Sbjct: 63  LHGILSQCSKLQNLSLEGLRL----SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 307 ELYLLDLSNNRIQGRISKSDSP----------------GWKSLIDLDLSNNFMTHIELHP 350
               LD  N       ++                    G++  +     +  +       
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSD---- 406
            ++++   +  N              + L     +  +    +  + +L+ L +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 407 -----------------NNLSGTIPPCLGNFSTELI 425
                            ++ +    P +GN   + I
Sbjct: 239 GTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 42/266 (15%), Positives = 81/266 (30%), Gaps = 14/266 (5%)

Query: 381 SNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG-HIH 439
           +   L   +   + S   +       + +   +      F   +  + L N+ +E   +H
Sbjct: 8   TGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR--VQHMDLSNSVIEVSTLH 64

Query: 440 DTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKIL 499
              +  S L++L L   +L  P+  +LAK   L  +N+        F          ++ 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL- 123

Query: 500 VLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM 559
                     L  S      +    + ++H   T              K+          
Sbjct: 124 --------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 560 GGAFYDESITVAMQGHDFQLQKILVMFRAMDFSR-NRFHGEIPEVLGNFKSLKVLNLSHN 618
                D S +V ++   FQ    L   + +  SR      E    LG   +LK L +   
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

Query: 619 SLTGNIPVSFENMTALESLDLSFNKL 644
              G + +  E +  L+     F  +
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 33/269 (12%), Positives = 78/269 (28%), Gaps = 21/269 (7%)

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAY 292
             LDL+  NL   +     S  + +       + +        ++  +S   ++ +  + 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFM-----DQPLAEHFSPFRVQHMDLSN 55

Query: 293 CNITE--FPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHP 350
             I      G L    +L  L L   R+   I  + +            N+ +  + L  
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-----------KNSNLVRLNLSG 104

Query: 351 WMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLS 410
               +   L+      S L     +     +   +   +     +++ L       N   
Sbjct: 105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 164

Query: 411 GTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDL-NSNKLEGPLPRSLAKC 469
             +   +      +      +  L+      F   ++L+ L L     +       L + 
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 470 IKLEVVNVGKNMISDSFPCWLGSLHELKI 498
             L+ + V   +   +      +L  L+I
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 7/234 (2%)

Query: 4   LSKLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSS-TMTDL 62
             ++ H+DLS  V+ +   T   + S  +KL  L L    +S     +L   S+    +L
Sbjct: 45  PFRVQHMDLSNSVIEVS--TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 102

Query: 63  DLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCN 122
                  +      +     L  L L+     T    +   +     +  L++       
Sbjct: 103 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162

Query: 123 FTGSIPTSIGNLTRATEIAFASNH-FTGQLPHHVSGLSYLTTFDLSG-NYFQGGVPSWLF 180
               + T +        +  + +             L+YL    LS            L 
Sbjct: 163 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 181 TLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTI 234
            +P+L ++ +   + +G + L  L  +L  +++  +        +     N  I
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQL--LKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 2e-09
 Identities = 25/255 (9%), Positives = 62/255 (24%), Gaps = 21/255 (8%)

Query: 390 PPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLR 449
              IC  S+ +     ++ ++  IP    +     I L      L       F+    L 
Sbjct: 2   HHRICHCSN-RVFLCQESKVT-EIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56

Query: 450 SLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGP 509
            ++++ N +   +   +   +        +   +  +                    +  
Sbjct: 57  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP---------------EAFQN 101

Query: 510 LCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESIT 569
           L N                 ++        +        +  E+     +        + 
Sbjct: 102 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 161

Query: 570 VAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP-EVLGNFKSLKVLNLSHNSLTGNIPVSF 628
                              ++ S N    E+P +V        +L++S   +        
Sbjct: 162 KNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 221

Query: 629 ENMTALESLDLSFNK 643
           EN+  L +      K
Sbjct: 222 ENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 4/216 (1%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLL 113
           +L     +L    T+++           +L+   + ++      + +++  S L +L  +
Sbjct: 26  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE--KIEISQNDVLEVIEADVFSNLPKLHEI 83

Query: 114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQG 173
            +       +            +   I+         +    S    L     + N    
Sbjct: 84  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 143

Query: 174 GVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQ-LVNL 232
              S++      + + L+KN +    +       L ++ L +N     +PN  F      
Sbjct: 144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 203

Query: 233 TILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL 268
            ILD+S   +   +       LKKL+     N   L
Sbjct: 204 VILDISRTRIHS-LPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 32/209 (15%), Positives = 59/209 (28%), Gaps = 8/209 (3%)

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSL---LSFTSSANISIKYSLPSLKV 287
           N   L      L   I+   FS    L+ +++S N +   +     +N+   + +   K 
Sbjct: 30  NAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 288 LRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
               Y N   F         L       +        S       + D    +    +  
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVS--NNKLSGKIPPSI-CSLSSLQYLSL 404
           +        L L  N IQ         T++  ++  +N    ++P  +    S    L +
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 405 SDNNLSGTIPPCLGNFSTELITLHLKNNS 433
           S   +       L N   +L      N  
Sbjct: 209 SRTRIHSLPSYGLENL-KKLRARSTYNLK 236

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 32/254 (12%), Positives = 60/254 (23%), Gaps = 50/254 (19%)

Query: 392 SICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL 451
            +  ++S   ++    NL+  +PP L                                 L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---------------------------KDTTIL 36

Query: 452 DLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLC 511
            L+ N L      +L    +L  +N+ +  ++         +     L     +    L 
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLG 96

Query: 512 NSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVA 571
            +        +    L+               +    N                      
Sbjct: 97  QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--------------------- 135

Query: 572 MQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENM 631
           ++     L         +  + N        +L   ++L  L L  NSL   IP  F   
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS 194

Query: 632 TALESLDLSFNKLD 645
             L    L  N   
Sbjct: 195 HLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 45/228 (19%), Positives = 76/228 (33%), Gaps = 31/228 (13%)

Query: 207 SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNS 266
           S  +V  ++  +   +P    +  + TIL LS N L             +L  L+L    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE 66

Query: 267 LLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSD 326
                    + +  +LP L  L  ++  +   P   +    L +LD+S NR+   +    
Sbjct: 67  ------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGA 119

Query: 327 SPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLS 386
             G   L +L L  N +  +          L+  +                   +NN L+
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL------------------ANNNLT 161

Query: 387 GKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL 434
                 +  L +L  L L +N+L  TIP         L    L  N  
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 23/181 (12%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCL-------------- 417
           P  T +L +S N L      ++   + L  L+L    L+                     
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 418 ------GNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK 471
                 G     L  L +  N L             L+ L L  N+L+   P  L    K
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE 531
           LE +++  N +++     L  L  L  L+L+ N  Y         F    L    L  N 
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNP 206

Query: 532 F 532
           +
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 40/212 (18%), Positives = 68/212 (32%), Gaps = 12/212 (5%)

Query: 250 QFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFP-GFLRNSEEL 308
           + SK+     ++    +L +     ++          +L  +   +  F    L     L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPP--DLP-----KDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 309 YLLDLSNNRIQGRISKSDSP--GWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQG 366
             L+L    +         P  G   L    L +  +    L     +     R   +  
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 367 SILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELIT 426
             L      + L +  N+L    P  +     L+ LSL++NNL+      L      L T
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL-ENLDT 176

Query: 427 LHLKNNSLEGHIHDTFANASHLRSLDLNSNKL 458
           L L+ NSL   I   F  +  L    L+ N  
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 33/229 (14%), Positives = 53/229 (23%), Gaps = 31/229 (13%)

Query: 182 LPSLLSIDLSKNMLNG-PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSN 240
           + S L ++  K  L   P DL   P     + L EN +      +      LT L+L   
Sbjct: 9   VASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 241 NLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPG 300
            L+          L  L        SL     +        +   ++       +     
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 301 FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLR 360
                                            +   L        +L    N       
Sbjct: 126 LQEL--------------------YLKGNELKTLPPGLLTPTPKLEKLSLANN------N 159

Query: 361 NNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
              +   +L    +   LL+  N L   IP        L +  L  N  
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 35/204 (17%), Positives = 54/204 (26%), Gaps = 39/204 (19%)

Query: 54  NLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFL---------------NLNSQLTGYL 98
           +L    T L L    +       +     L  L L                L +    + 
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 99  PKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGL 158
              +     + L  L+VLD+ F   T     ++  L    E+    N      P  ++  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 159 SYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEI 218
             L    L+ N         L  L +L ++ L +N L                       
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---------------------- 185

Query: 219 RGTIPNSTFQLVNLTILDLSSNNL 242
             TIP   F    L    L  N  
Sbjct: 186 --TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 14/204 (6%)

Query: 7   LTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGG 66
            T L LS  +L        +  + LT+L+L     T + +     +L             
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS------- 85

Query: 67  TRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGS 126
                            Q L       ++     S     LR L  L  L +        
Sbjct: 86  ------HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 127 IPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLL 186
            P  +    +  +++ A+N+ T      ++GL  L T  L  N     +P   F    L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 187 SIDLSKNMLNGPIDLFQLPNSLQD 210
              L  N      ++      LQD
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 590 DFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIP 649
           +  +      +P  L   K   +L+LS N L      +    T L  L+L   +L     
Sbjct: 16  NCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 650 EQLLS 654
           +  L 
Sbjct: 73  DGTLP 77

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 30/197 (15%), Positives = 48/197 (24%), Gaps = 14/197 (7%)

Query: 73  FPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSP-LRELDLLSVLDIGFCNFTGSIPTSI 131
            P D+    +  IL L+ N  L  +   +      L +L+L                   
Sbjct: 25  LPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG------- 74

Query: 132 GNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS 191
             L     +  + N          +  +               + +              
Sbjct: 75  -TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQF 251
             +   P  L      L+ + L  N +          L NL  L L  N+L        F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--TIPKGF 191

Query: 252 SKLKKLQFLDLSNNSLL 268
                L F  L  N  L
Sbjct: 192 FGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 33/249 (13%), Positives = 57/249 (22%), Gaps = 59/249 (23%)

Query: 130 SIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSID 189
            +  +    E+     + T  LP  +      T   LS N       + L     L  ++
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 190 LSKNMLNGPIDLFQLPN------------------------------------------- 206
           L +  L        LP                                            
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 207 --SLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN 264
                     +     T+P               +NN    +     + L+ L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 265 NSLLSFTSSANISIKYSLPSLKVLRFAY------CNITEFPGFLRNSEELYLLDLSNNRI 318
           NSL +          +    L             C I  F  +L+++ E   +      +
Sbjct: 182 NSLYTIPKGF-----FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDV 236

Query: 319 QGRISKSDS 327
           +   S   S
Sbjct: 237 KAMTSNVAS 245

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 16/232 (6%)

Query: 200 DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQF 259
            +F  P     +++   +   T   +   L  +T L      ++     +    L  L  
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIG 67

Query: 260 LDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
           L+L +N +       N++                N  +    +   + +  LDL++ +I 
Sbjct: 68  LELKDNQITDLAPLKNLTKIT-------ELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLL 379
                +     + L         ++ +     +   +          + L        L 
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS-IGNAQVSDLTPLANLSKLTTLK 179

Query: 380 VSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
             +NK+S   P  + SL +L  + L +N +S   P  L N S  L  + L N
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN-LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 24/219 (10%), Positives = 57/219 (26%), Gaps = 12/219 (5%)

Query: 422 TELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM 481
              I +    +++   +  T A+   + +L      +       +     L  + +  N 
Sbjct: 19  ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74

Query: 482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIF 541
           I+D  P    +      L     +    +                       G    ++ 
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 542 PSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIP 601
                                    +  V+       L K+      +    N+     P
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL----TTLKADDNKISDISP 190

Query: 602 EVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLS 640
             L +  +L  ++L +N ++   P    N + L  + L+
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 25/222 (11%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 443 ANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLR 502
              ++   +    + +   +  + A    +  ++     ++      +  L+ L  L L+
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 503 SNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGA 562
            N+        N+T   +     +   N       + I         + +   L  +   
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL--- 128

Query: 563 FYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTG 622
             +  +          +  +  +      S           L N   L  L    N ++ 
Sbjct: 129 -SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 623 NIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLS 664
             P    ++  L  + L  N++    P  L + + L ++ L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 36/235 (15%), Positives = 68/235 (28%), Gaps = 25/235 (10%)

Query: 30  NLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLN 89
            L     +  G +N++     + L+    +T L   GT +     + +  L NL  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 90  LNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTG 149
            N        K+                        S          A   +  +   T 
Sbjct: 72  DNQITDLAPLKNLTK---------------ITELELSGNPLKNVSAIAGLQSIKTLDLTS 116

Query: 150 QLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQ 209
                V+ L+ L+   +                 + L      N     +      + L 
Sbjct: 117 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 210 DVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSN 264
            ++ ++N+I    P +   L NL  + L +N +S        +    L  + L+N
Sbjct: 177 TLKADDNKISDISPLA--SLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTN 226

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 49/341 (14%), Positives = 94/341 (27%), Gaps = 45/341 (13%)

Query: 331 KSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIP 390
           +   +L+L+N  ++ +   P  ++ +L    N +                       ++P
Sbjct: 38  RQAHELELNNLGLSSLPELPP-HLESLVASCNSLT----------------------ELP 74

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
               SL SL   + +   LS   P            L     S            S    
Sbjct: 75  ELPQSLKSLLVDNNNLKALSDLPP-----------LLEYLGVSNNQLEKLPELQNSSFLK 123

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLH---ELKILVLRSNRFY 507
           +    N     LP        +   N     + +       +        +  L      
Sbjct: 124 IIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLS 183

Query: 508 GPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDES 567
                +      +   + +L            +    +   +++     +       +  
Sbjct: 184 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP 243

Query: 568 ITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS 627
            ++        +   L       +  N    EI  +     SL+ LN+S+N L   +P  
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL 302

Query: 628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
                 LE L  SFN L   +PE   +   L  L++ YN L
Sbjct: 303 PPR---LERLIASFNHL-AEVPELPQN---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 16/102 (15%)

Query: 239 SNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEF 298
             N S             L+ L++SNN L+   +          P L+ L  ++ ++ E 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL--------PPRLERLIASFNHLAEV 319

Query: 299 PGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
           P   +N   L  L +  N ++      D P   S+ DL +++
Sbjct: 320 PELPQN---LKQLHVEYNPLR---EFPDIPE--SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 213 LEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTS 272
              N     I +      +L  L++S+N L      +  +   +L+ L  S N L     
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL----- 316

Query: 273 SANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYL 310
                +     +LK L   Y  + EFP    + E+L +
Sbjct: 317 ---AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 381 SNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHD 440
             N  S +I        SL+ L++S+N L   +P         L  L    N L   + +
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPE 321

Query: 441 TFANASHLRSLDLNSNKLEG--PLPRSL 466
              N   L+ L +  N L     +P S+
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 330 WKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKI 389
             SL +L++SNN +  +   P   +  L    N +   +   P + K L V  N L  + 
Sbjct: 283 PPSLEELNVSNNKLIELPALPP-RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLR-EF 339

Query: 390 PPSICSLSSLQ 400
           P    S+  L+
Sbjct: 340 PDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 341 NFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQ 400
           +           ++  L++ NN++   +   PP  + L+ S N L+ ++P       +L+
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPEL---PQNLK 327

Query: 401 YLSLSDNNLSGTIPPCLGNFS 421
            L +  N L    P    +  
Sbjct: 328 QLHVEYNPLR-EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 40/291 (13%), Positives = 76/291 (26%), Gaps = 25/291 (8%)

Query: 394 CSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG----------------H 437
           C       L L++  LS ++P    +    L +L    NSL                  +
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH----LESLVASCNSLTELPELPQSLKSLLVDNNN 89

Query: 438 IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELK 497
           +         L  L +++N+LE       +  +K+  V+          P  L  +    
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 498 ILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE 557
             +            + I     +L+ +          +                     
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSH 617
           Y           +        ++   +           F      +      L       
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 618 NSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRL 668
           N+ +  I    +   +LE L++S NKL   +P        L  L  S+N L
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHL 316

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 51/344 (14%), Positives = 101/344 (29%), Gaps = 23/344 (6%)

Query: 21  QRTFDLLASNLTKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRL 80
            R  D L     +L L +LG +++    P    +L      L      +    P+    L
Sbjct: 30  SRLRDCLDRQAHELELNNLGLSSL----PELPPHL----ESLVASCNSLT-ELPELPQSL 80

Query: 81  PNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRATEI 140
            +L +   NL +     LP       +    L  + ++   +F   I     +L +  ++
Sbjct: 81  KSLLVDNNNLKAL--SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL 138

Query: 141 AFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPID 200
             +                      L+  Y        L  LP  L   ++ N +   + 
Sbjct: 139 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 198

Query: 201 LFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSG---AIRFDQFSKLKKL 257
             Q    L  +  + N ++                +  ++           D    +   
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 258 QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNR 317
                 N   L+ +S+   S+    PSL+ L  +   + E P        L  L  S N 
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNH 315

Query: 318 IQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN 361
           +            ++L  L +  N +      P  ++  L + +
Sbjct: 316 LA-----EVPELPQNLKQLHVEYNPLREFPDIP-ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 44/316 (13%), Positives = 85/316 (26%), Gaps = 26/316 (8%)

Query: 231 NLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSS-----------ANISIK 279
               L+L++  LS             L+ L  S NSL                  N+   
Sbjct: 39  QAHELELNNLGLSSLP-----ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 280 YSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLS 339
             LP L        N  E    L+NS  L ++D+ NN ++       S  + +  +  L 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 340 NNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSL 399
                             +         + +        ++        +P      +  
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLE 459
             L    +         + +     +    ++ +      + F+  S L       N   
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 460 GPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPF 519
             +         LE +NV  N +    P        L+ L+   N        + +    
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL------AEVPELP 323

Query: 520 QALRIIDLSHNEFTGF 535
           Q L+ + + +N    F
Sbjct: 324 QNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 53/338 (15%), Positives = 103/338 (30%), Gaps = 26/338 (7%)

Query: 161 LTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRG 220
               +L+       +P      P L S+  S N L    +L +LP SL+ + ++ N ++ 
Sbjct: 40  AHELELNNLGLSS-LPELP---PHLESLVASCNSLT---ELPELPQSLKSLLVDNNNLKA 92

Query: 221 TIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKY 280
                         L+    + +   +  +      L+ +D+ NNSL             
Sbjct: 93  LSDLPPL-------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFI 145

Query: 281 SLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSN 340
           +  + ++          F   +                   I   ++   +     +L  
Sbjct: 146 AAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 341 NFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQ 400
             +T I     +  T  DL  +    ++     +    L  +             LS L 
Sbjct: 206 --LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEG 460
                 N  S  I        + L  L++ NN L   +         L  L  + N L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPS-LEELNVSNNKLI-ELPALP---PRLERLIASFNHLAE 318

Query: 461 PLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKI 498
            +P        L+ ++V  N +   FP    S+ +L++
Sbjct: 319 -VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 46/315 (14%), Positives = 88/315 (27%), Gaps = 37/315 (11%)

Query: 353 NITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGT 412
               L+L N  +  S+   PP  + L+ S N L+ ++P    SL SL   + +   LS  
Sbjct: 39  QAHELELNNLGLS-SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 96

Query: 413 IPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL 472
            P       +      L        +     + + L+ L      LE     +       
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEF 532
           E+ N+       +    L  L +L + +         L           L  I   +N  
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 533 TGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMF------ 586
                         +++       E      + +       G       +  +       
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 587 ----------RAMDFSRNRFHGEIPEVLGN-----------------FKSLKVLNLSHNS 619
                       ++ S N+   E+P +                     ++LK L++ +N 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP 335

Query: 620 LTGNIPVSFENMTAL 634
           L    P   E++  L
Sbjct: 336 LRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 608 KSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNR 667
           +    L L++  L+ ++P    +   LESL  S N L   +PE   S   L  L +  N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQS---LKSLLVDNNN 89

Query: 668 LWGRIPRGNQFNTFENDSYIGNIHLCGEPL 697
           L                +         +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNS 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 163 TFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTI 222
              L+       V   L  L  +  +DLS N L            L+ ++  +N +    
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE--N 57

Query: 223 PNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSL 282
            +    L  L  L L +N L  +          +L  L+L  NS L         +   L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEML 116

Query: 283 PSLKVL 288
           PS+  +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 234 ILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYC 293
           +L L+  +L+         +L  +  LDLS+N L +   +       +L  L+VL+ +  
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPAL-----AALRCLEVLQASDN 53

Query: 294 NITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
            +    G         L  L NNR+Q   +         L+ L+L  N +   E
Sbjct: 54  ALENVDGVANLPRLQEL-LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 336 LDLSNNFMTHIE-LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSIC 394
           L L++  +T +  L   + +T LDL +NR++           + ++  +  + +    + 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL---EGHIHDTFANASHLRSL 451
           +L  LQ L L +N L  +           L+ L+L+ NSL   EG           + S+
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 24/127 (18%)

Query: 286 KVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTH 345
           +VL  A+ ++T     L     +  LDLS+NR++           + L  L  S+N + +
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALEN 57

Query: 346 IE-LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSL 404
           ++ +     +  L L NNR+Q                           + S   L  L+L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQ--------------------QSAAIQPLVSCPRLVLLNL 97

Query: 405 SDNNLSG 411
             N+L  
Sbjct: 98  QGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 258 QFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNR 317
           + L L++  L              L  +  L  ++  +   P  L     L  L++    
Sbjct: 1   RVLHLAHKDLTVLCHLEQ------LLLVTHLDLSHNRLRALPPALAA---LRCLEVLQAS 51

Query: 318 IQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWM----NITTLDLRNNRIQG 366
                +         L +L L NN +        +     +  L+L+ N +  
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 22/197 (11%), Positives = 59/197 (29%), Gaps = 10/197 (5%)

Query: 444 NASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRS 503
             +     +L    +   + ++      ++ +    + I       +  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 504 NRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAF 563
           N+       +N          +D +  +    L         ++++         +    
Sbjct: 78  NKLTDIKPLAN--LKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 564 YDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGN 623
            +       +  D  +   L     +    N+    +P  L     L+ L LS N ++ +
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-D 192

Query: 624 IPVSFENMTALESLDLS 640
           +  +   +  L+ L+L 
Sbjct: 193 LR-ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 15/207 (7%)

Query: 200 DLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQF 259
            +F      + ++    +   T   +  +L ++  +  +++++           L  +  
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTK 72

Query: 260 LDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ 319
           L L+ N          ++    L +LK L + + +  +        +   L  LS     
Sbjct: 73  LFLNGN---------KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 320 GRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI-LVPPPSTKVL 378
                      +       +N       L     + TL L +N+I   + L      + L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 379 LVSNNKLSGKIPPSICSLSSLQYLSLS 405
            +S N +S     ++  L +L  L L 
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 16/204 (7%)

Query: 228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKV 287
                   +L   +++ A+  ++   L  +  +  +N+ + S            LP++  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQGIQY------LPNVTK 72

Query: 288 LRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIE 347
           L      +T+          L  L             S     K L  L L +N ++ I 
Sbjct: 73  LFLNGNKLTDIKPL----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 348 LHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDN 407
               +         N     I V    TK+  +S           +  L+ LQ L LS N
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188

Query: 408 NLSGTIPPCLGNFSTELITLHLKN 431
           ++S      L      L  L L +
Sbjct: 189 HISD--LRALAGL-KNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 28/200 (14%), Positives = 66/200 (33%), Gaps = 13/200 (6%)

Query: 465 SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRI 524
           + A+ IK    N+ K  ++D+       L+ +  ++  ++          +      +  
Sbjct: 22  AFAETIKD---NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLP----NVTK 72

Query: 525 IDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILV 584
           + L+ N+ T   P     ++  +   + + +                       +  ++ 
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKL 644
           + +               VL     L  L+L  N ++  +P     +T L++L LS N +
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 645 DGRIPEQLLSVTALALLNLS 664
                  L  +  L +L L 
Sbjct: 191 SD--LRALAGLKNLDVLELF 208

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 8/180 (4%)

Query: 355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIP 414
           TT+D     ++      P  T  LL+++N+L       +              N    I 
Sbjct: 11  TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70

Query: 415 PCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV 474
           P     ++ +  L L  N ++   +  F     L++L+L  N++   +P S      L  
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

Query: 475 VNV-GKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFT 533
           +N+       +    W       K L   + R   P          + ++I DL H+EF 
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP-------SKVRDVQIKDLPHSEFK 183

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.3 bits (118), Expect = 4e-07
 Identities = 36/325 (11%), Positives = 80/325 (24%), Gaps = 39/325 (12%)

Query: 376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNF---STELITLHLKNN 432
           K+  ++       +   +    S++ + LS N +       L        +L      + 
Sbjct: 11  KLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 433 SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKC-IKLEVVNVGKNMISDSFPCWLG 491
                  +       L    L   KL        A      E +    +  +     +L 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 492 SLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVD 551
           +         +  R    L  +        LR I    N       +    + ++ + + 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 552 E---------------------QGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMD 590
                                     E       D + T           K     R + 
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 591 FSRNRFHGEIPEVLGN------FKSLKVLNLSHNSLTGNIPVS-----FENMTALESLDL 639
            +           + +         L+ L L +N +  +   +      E M  L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 640 SFNKL--DGRIPEQLLSVTALALLN 662
           + N+   +  + +++  V +     
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 47/333 (14%), Positives = 94/333 (28%), Gaps = 36/333 (10%)

Query: 207 SLQDVRLEENEIRG----TIPNSTFQLVNLTILDLSSNNLS--GAIRF-DQFSKLKKLQF 259
           S++   L+ + I      ++     +  ++  + LS N +    A    +  +  K L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 260 LDLSNNSLLSFTSSAN------ISIKYSLPSLKVLRFAYCNITE-----FPGFLRNSEEL 308
            + S+                 +      P L  +R +              FL     L
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 309 YLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSI 368
             L L NN +  +     +   + L     + N      +    N           +   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 369 LVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLG------NFST 422
                 T  ++ +  +  G     +  L+  Q L + D   +                  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 423 ELITLHLKNNSLEGHIHDTFANA------SHLRSLDLNSNKLEGPLPRSLAKCI-----K 471
            L  L L +  L         +A        L++L L  N++E    R+L   I      
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 472 LEVVNVGKNMISDSFPCWLGSLHELKILVLRSN 504
           L  + +  N  S+     +  + E+     R  
Sbjct: 304 LLFLELNGNRFSEE-DDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 46/316 (14%), Positives = 88/316 (27%), Gaps = 24/316 (7%)

Query: 175 VPSWLFTLPSLLSIDLSKNMLNGPI-----DLFQLPNSLQDVRLEENEIRGTIPNSTFQL 229
           V + L    S+  I LS N +         +       L+     +             L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 230 VNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLR 289
             L    L    L   +R    +     Q   +   S  +      +      P      
Sbjct: 83  RLLLQALLKCPKLH-TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141

Query: 290 FAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELH 349
                        +N+  L  +    NR++    K  +  ++S   L         I   
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201

Query: 350 PWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNL 409
              ++    L   +    + +   +        +  S  +  ++ S  +L+ L L+D  L
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTF------THLGSSALAIALKSWPNLRELGLNDCLL 255

Query: 410 SGTIPPCLGNF-----STELITLHLKNNSLEGHIHDTFANA-----SHLRSLDLNSNKL- 458
           S      + +      +  L TL L+ N +E     T           L  L+LN N+  
Sbjct: 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

Query: 459 -EGPLPRSLAKCIKLE 473
            E  +   + +     
Sbjct: 316 EEDDVVDEIREVFSTR 331

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 5/149 (3%)

Query: 372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKN 431
           P  +  L  + +         +    +L  L + +      +         EL  L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 432 NSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLG 491
           + L     D F     L  L+L+ N LE    +++      E+V  G  +       WL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 492 SLHELKILVLRSNRFY----GPLCNSNIT 516
              E  +  +   +      GPL +    
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 5/126 (3%)

Query: 391 PSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS 450
           P  C       L  + +         L                L+            LR+
Sbjct: 2   PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPL 510
           L +  + L    P +     +L  +N+  N +  S          L+ LVL  N      
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL---H 116

Query: 511 CNSNIT 516
           C+  + 
Sbjct: 117 CSCALR 122

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 15/193 (7%)

Query: 229 LVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVL 288
           L       L   N++  +     + L ++  L      + S            +  L  L
Sbjct: 17  LAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSIDG---------VEYLNNL 64

Query: 289 RFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIEL 348
                +  +            L+D+  N  Q       +           +N       L
Sbjct: 65  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 349 HPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNN 408
               N+  L+L +N I     +   ++   L  ++     + P + +L++L+ L +S N 
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNK 183

Query: 409 LSGTIPPCLGNFS 421
           +S      L   +
Sbjct: 184 VSD--ISVLAKLT 194

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 25/202 (12%), Positives = 62/202 (30%), Gaps = 12/202 (5%)

Query: 438 IHDTF--ANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHE 495
           I+  F     +      L    +   +  S     ++  +   +  I       +  L+ 
Sbjct: 8   INQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNN 63

Query: 496 LKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGR 555
           L  +   +N+        N+T        I +++N+     P     ++  +   + Q  
Sbjct: 64  LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPLANLTNLTGLTLFNNQIT 119

Query: 556 LEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNL 615
                    + +           +  +  +      + +       + L N  +L+ L++
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 179

Query: 616 SHNSLTGNIPVSFENMTALESL 637
           S N ++         +T LESL
Sbjct: 180 SSNKVSD--ISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 606 NFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY 665
           N    + L+L    +   I      +   +++D S N++       LL    L  L ++ 
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLL--RRLKTLLVNN 72

Query: 666 NRLWGRIPRGNQFNTFENDSYIGNIHL 692
           NR+       +Q      +  + N  L
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 156 SGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEE 215
           +        DL G      + +   TL    +ID S N +        L   L+ + +  
Sbjct: 15  TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFPLLRR-LKTLLVNN 72

Query: 216 NEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN 275
           N I          L +LT L L++N+L      D  + LK L +L +  N + +      
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 276 ISIKYSLPSLKVL 288
             I Y +P ++VL
Sbjct: 133 YVI-YKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 11/148 (7%)

Query: 211 VRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF 270
           V+L    I           V    LDL    +   I  +  + L +   +D S+N +   
Sbjct: 1   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEI--- 53

Query: 271 TSSANISIKYSLPSLKVLRF-AYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPG 329
                +     L  LK L            G  +   +L  L L+NN +           
Sbjct: 54  ---RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 110

Query: 330 WKSLIDLDLSNNFMTHIELHPWMNITTL 357
            KSL  L +  N +T+ + +    I  +
Sbjct: 111 LKSLTYLCILRNPVTNKKHYRLYVIYKV 138

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 179 LFTLPSLLSIDLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGT--IPNSTFQLVNLTILD 236
           L      + ++   +M      + +    L  + L  N +     + +   +  NL IL+
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 237 LSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSAN---ISIKYSLPSLKVL 288
           LS N L  + R     K  KL+ L L  NSL       +    +I+   P L  L
Sbjct: 98  LSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	776
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.41

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=7.4e-31  Score=271.35  Aligned_cols=259  Identities=31%  Similarity=0.532  Sum_probs=182.8

Q ss_pred             CCcEEEccCCcCcc--CCCccccCCCCCCEEEccC-CcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccE
Q 047486          374 STKVLLVSNNKLSG--KIPPSICSLSSLQYLSLSD-NNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRS  450 (776)
Q Consensus       374 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  450 (776)
                      +++.|+++++.+.+  .+|..++++++|++|+|++ |+++|.+|+.+..+. +|++|++++|++.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc-ccchhhhccccccccccccccchhhhcc
Confidence            45666666666665  3556666666666666664 556666666665554 5666666666666655555666666666


Q ss_pred             EEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCC
Q 047486          451 LDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHN  530 (776)
Q Consensus       451 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n  530 (776)
                      +++++|.+.+.+|..+.+++.|+.+++++|.+.+.+|..+..+..+                         ++.+++++|
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-------------------------~~~l~~~~n  184 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------------------------FTSMTISRN  184 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-------------------------CCEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccc-------------------------ccccccccc
Confidence            6666666655555566666666666666665555555555444433                         245555566


Q ss_pred             cCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCC
Q 047486          531 EFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSL  610 (776)
Q Consensus       531 ~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L  610 (776)
                      ++++..|..+ .                                        ......++++++...+.+|..++.++++
T Consensus       185 ~l~~~~~~~~-~----------------------------------------~l~~~~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         185 RLTGKIPPTF-A----------------------------------------NLNLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             EEEEECCGGG-G----------------------------------------GCCCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             cccccccccc-c----------------------------------------cccccccccccccccccccccccccccc
Confidence            6555444331 1                                        1123468888888888889889999999


Q ss_pred             CEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCCCCCCCccccccccccc
Q 047486          611 KVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPRGNQFNTFENDSYIGNI  690 (776)
Q Consensus       611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~  690 (776)
                      +.+++++|.+++.+| .++.+++|+.|||++|+++|.+|+.|+++++|++|||++|+|+|.||..+.+..+....+.||.
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            999999999987655 5788899999999999999999999999999999999999999999988778888888889999


Q ss_pred             CCCCCCCCCCC
Q 047486          691 HLCGEPLTVRC  701 (776)
Q Consensus       691 ~l~g~pl~~~C  701 (776)
                      .+||.|+. .|
T Consensus       303 ~l~g~plp-~c  312 (313)
T d1ogqa_         303 CLCGSPLP-AC  312 (313)
T ss_dssp             EEESTTSS-CC
T ss_pred             cccCCCCC-CC
Confidence            99998875 56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1.1e-29  Score=262.43  Aligned_cols=251  Identities=26%  Similarity=0.446  Sum_probs=212.1

Q ss_pred             ccCEEeccCcccCCC--CCC---CCCCCcEEEccC-CcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccE
Q 047486          353 NITTLDLRNNRIQGS--ILV---PPPSTKVLLVSN-NKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELIT  426 (776)
Q Consensus       353 ~L~~L~l~~n~l~~~--~~~---~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~  426 (776)
                      .++.|+++++.+.+.  +|.   .+++|++|++++ |.+.|.+|..+.++++|++|++++|++.+..+..+.... .|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh-hhcc
Confidence            588999999999874  444   389999999997 899999999999999999999999999977777776665 7999


Q ss_pred             EECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCC-cEEEcCCCccCcccchhhcCCCCcCEEEccCCc
Q 047486          427 LHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL-EVVNVGKNMISDSFPCWLGSLHELKILVLRSNR  505 (776)
Q Consensus       427 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  505 (776)
                      +++++|.+.+.+|..+.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..+ .+++.++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999999999999999999999999999999999999999988886 899999999999888877765443 46666555


Q ss_pred             ccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcc
Q 047486          506 FYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVM  585 (776)
Q Consensus       506 l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (776)
                      ..+.++...  ..                                                                ++.
T Consensus       209 ~~~~~~~~~--~~----------------------------------------------------------------~~~  222 (313)
T d1ogqa_         209 LEGDASVLF--GS----------------------------------------------------------------DKN  222 (313)
T ss_dssp             EEECCGGGC--CT----------------------------------------------------------------TSC
T ss_pred             ccccccccc--cc----------------------------------------------------------------ccc
Confidence            554333221  11                                                                345


Q ss_pred             eeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCcc
Q 047486          586 FRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSY  665 (776)
Q Consensus       586 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  665 (776)
                      ++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|.+|+++++|++|||++|+++|.+|+ +.++++|+.+++++
T Consensus       223 l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN  300 (313)
T ss_dssp             CSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred             cccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCC
Confidence            6677777777776654 588889999999999999999999999999999999999999999995 68899999999999


Q ss_pred             Cc-ceec-CC
Q 047486          666 NR-LWGR-IP  673 (776)
Q Consensus       666 N~-l~g~-iP  673 (776)
                      |+ ++|. +|
T Consensus       301 N~~l~g~plp  310 (313)
T d1ogqa_         301 NKCLCGSPLP  310 (313)
T ss_dssp             SSEEESTTSS
T ss_pred             CccccCCCCC
Confidence            97 6764 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-26  Score=247.81  Aligned_cols=342  Identities=23%  Similarity=0.269  Sum_probs=204.8

Q ss_pred             CCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCCcc
Q 047486          228 QLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEE  307 (776)
Q Consensus       228 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~  307 (776)
                      .+.+|++|+++++.++ .+  ..+..+++|++|++++|++++++.      +..+++|++|++++|.+..+++ +..+++
T Consensus        42 ~l~~l~~L~l~~~~I~-~l--~gl~~L~nL~~L~Ls~N~l~~l~~------l~~L~~L~~L~L~~n~i~~i~~-l~~l~~  111 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SI--DGVEYLNNLTQINFSNNQLTDITP------LKNLTKLVDILMNNNQIADITP-LANLTN  111 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CC--TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             HhCCCCEEECCCCCCC-Cc--cccccCCCCCEEeCcCCcCCCCcc------ccCCcccccccccccccccccc-cccccc
Confidence            4556777777777665 33  245566677777777776655542      3356666666666666665543 556666


Q ss_pred             cceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccCcccCCCCCCCCCCCcEEEccCCcCcc
Q 047486          308 LYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSG  387 (776)
Q Consensus       308 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~  387 (776)
                      |+.|+++++.+++..+.   .....+.......+.+..............                  .......     
T Consensus       112 L~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~~~~~-----  165 (384)
T d2omza2         112 LTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSGLTSLQQ------------------LSFGNQV-----  165 (384)
T ss_dssp             CCEEECCSSCCCCCGGG---TTCTTCSEEEEEEEEECCCGGGTTCTTCSE------------------EEEEESC-----
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccccccccccc------------------ccccccc-----
Confidence            66666666665532211   222334444444444333322111111000                  0000000     


Q ss_pred             CCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhh
Q 047486          388 KIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLA  467 (776)
Q Consensus       388 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  467 (776)
                      .....+...+.........|...  .......+. +++.+++++|.+++..+  +..+++|+.|++++|+++..  ..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~  238 (384)
T d2omza2         166 TDLKPLANLTTLERLDISSNKVS--DISVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA  238 (384)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred             chhhhhccccccccccccccccc--ccccccccc-ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhh
Confidence            11122333344444444444432  222333333 56677777776665543  34456677777777776643  3566


Q ss_pred             cCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHh
Q 047486          468 KCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAM  547 (776)
Q Consensus       468 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l  547 (776)
                      .+++|+.|++++|++++..+  +..+++|++|++++|++.+..+    ...++.++.++++.|.+++. +.  +      
T Consensus       239 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~~-~~--~------  303 (384)
T d2omza2         239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDI-SP--I------  303 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCC-GG--G------
T ss_pred             cccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc----cccccccccccccccccccc-cc--c------
Confidence            67777777777777765443  5667777777777777665432    23466677777777777642 11  0      


Q ss_pred             hhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCcc
Q 047486          548 KNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVS  627 (776)
Q Consensus       548 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  627 (776)
                                                       ..++.++.|++++|++++..  .+..+++|+.|++++|++++ +| .
T Consensus       304 ---------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~  346 (384)
T d2omza2         304 ---------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-S  346 (384)
T ss_dssp             ---------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-G
T ss_pred             ---------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-h
Confidence                                             11456788899999888754  37889999999999999885 44 6


Q ss_pred             ccccCCCcEEeccCccCcCCCchhhccccccccccCccC
Q 047486          628 FENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYN  666 (776)
Q Consensus       628 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  666 (776)
                      |+++++|++||+++|++++.+|  +.++++|+.|+|++|
T Consensus       347 l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8899999999999999987655  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.9e-25  Score=237.92  Aligned_cols=103  Identities=28%  Similarity=0.401  Sum_probs=59.0

Q ss_pred             ccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCC
Q 047486          393 ICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKL  472 (776)
Q Consensus       393 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  472 (776)
                      +..++.++.++++.|.+.+ ++ .+.... +++.|++++|++++..  .+..+++|++|++++|++++. + .+.++++|
T Consensus       281 ~~~~~~l~~l~~~~n~l~~-~~-~~~~~~-~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L  353 (384)
T d2omza2         281 LAGLTALTNLELNENQLED-IS-PISNLK-NLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNI  353 (384)
T ss_dssp             GTTCTTCSEEECCSSCCSC-CG-GGGGCT-TCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTC
T ss_pred             ccccccccccccccccccc-cc-ccchhc-ccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCC
Confidence            4455566666666666552 22 233333 5666666666666543  255566666666666666542 2 46666666


Q ss_pred             cEEEcCCCccCcccchhhcCCCCcCEEEccCC
Q 047486          473 EVVNVGKNMISDSFPCWLGSLHELKILVLRSN  504 (776)
Q Consensus       473 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  504 (776)
                      ++|++++|++++..|  +.++++|+.|+|++|
T Consensus       354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            666666666665543  556666666666655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.7e-23  Score=211.38  Aligned_cols=270  Identities=17%  Similarity=0.181  Sum_probs=179.4

Q ss_pred             CEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcC
Q 047486          355 TTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSL  434 (776)
Q Consensus       355 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l  434 (776)
                      +.++.++..++...+.-++.+++|++++|+++...+.+|.++++|++|++++|.+....|..+..+. +|++|++++|++
T Consensus        13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~-~L~~L~l~~n~l   91 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQL   91 (305)
T ss_dssp             TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCC
T ss_pred             CEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC-ccCEecccCCcc
Confidence            4444444444433222245666677777777655556677777777777777777744455555544 677777777777


Q ss_pred             CccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccC--cccchhhcCCCCcCEEEccCCcccccCCC
Q 047486          435 EGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMIS--DSFPCWLGSLHELKILVLRSNRFYGPLCN  512 (776)
Q Consensus       435 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  512 (776)
                      +.+....   ...++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+++++++|.+.. ++.
T Consensus        92 ~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~  167 (305)
T d1xkua_          92 KELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ  167 (305)
T ss_dssp             SBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS
T ss_pred             CcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCc
Confidence            6543322   346677777777777666666667777777777766443  3334566777777888887777654 222


Q ss_pred             CCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecC
Q 047486          513 SNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFS  592 (776)
Q Consensus       513 ~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  592 (776)
                          ..+++|+.|++++|..++..+.. |..                                       ++.++.|+++
T Consensus       168 ----~~~~~L~~L~l~~n~~~~~~~~~-~~~---------------------------------------~~~l~~L~~s  203 (305)
T d1xkua_         168 ----GLPPSLTELHLDGNKITKVDAAS-LKG---------------------------------------LNNLAKLGLS  203 (305)
T ss_dssp             ----SCCTTCSEEECTTSCCCEECTGG-GTT---------------------------------------CTTCCEEECC
T ss_pred             ----ccCCccCEEECCCCcCCCCChhH-hhc---------------------------------------cccccccccc
Confidence                22567888888888777554432 211                                       4566788888


Q ss_pred             CCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhh------ccccccccccCccC
Q 047486          593 RNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQL------LSVTALALLNLSYN  666 (776)
Q Consensus       593 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~ls~N  666 (776)
                      +|.+++..+..+.++++|++|+|++|+|+ .+|.+|.++++|++|+|++|+|+......|      ..+.+|+.|++++|
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence            88888887888888888888888888887 567788888888888888888885433333      34567888888888


Q ss_pred             cce-ecCCC
Q 047486          667 RLW-GRIPR  674 (776)
Q Consensus       667 ~l~-g~iP~  674 (776)
                      ++. ..+|.
T Consensus       283 ~~~~~~~~~  291 (305)
T d1xkua_         283 PVQYWEIQP  291 (305)
T ss_dssp             SSCGGGSCG
T ss_pred             cCccCcCCH
Confidence            874 34443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=9.2e-23  Score=209.17  Aligned_cols=255  Identities=22%  Similarity=0.242  Sum_probs=182.8

Q ss_pred             CCccEEeccCCCCCCcch-hhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccccccCEEeccC
Q 047486          283 PSLKVLRFAYCNITEFPG-FLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPWMNITTLDLRN  361 (776)
Q Consensus       283 ~~L~~L~l~~n~l~~lp~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~  361 (776)
                      +++++|++++|.++.+|+ +|.++++|++|++++|.+. .++...|..++.|++|++++|+++.++...+..+..|++.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~  109 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE  109 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred             CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccc
Confidence            345555555555555553 4555666666666666655 33333345566666666666666666555555666666666


Q ss_pred             cccCCCC---CCCCCCCcEEEccCCcC--ccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCc
Q 047486          362 NRIQGSI---LVPPPSTKVLLVSNNKL--SGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG  436 (776)
Q Consensus       362 n~l~~~~---~~~~~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~  436 (776)
                      |.+.+..   +........++...|..  ....+..+..+++|+.+++++|.+. .+|..+   .++|+.|++++|.+++
T Consensus       110 n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITK  185 (305)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCE
T ss_pred             cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCC
Confidence            6555432   22345556677766643  3345567888899999999999987 677654   3489999999999999


Q ss_pred             cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCC--
Q 047486          437 HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSN--  514 (776)
Q Consensus       437 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--  514 (776)
                      ..+..|..++.++.|++++|.+++..+.++.++++|++|+|++|+++. +|.++..+++|++|++++|+++......+  
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             CChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccCccChhhccC
Confidence            999999999999999999999998889999999999999999999985 57789999999999999999886432221  


Q ss_pred             --CCcCCCCccEEeCCCCcCC-CCCCcccccC
Q 047486          515 --ITFPFQALRIIDLSHNEFT-GFLPRRIFPS  543 (776)
Q Consensus       515 --~~~~l~~L~~LdLs~n~l~-~~~p~~~~~~  543 (776)
                        ......+|+.|++++|++. ..++...|..
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             cchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence              2345678999999999985 4566555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-23  Score=210.14  Aligned_cols=226  Identities=21%  Similarity=0.203  Sum_probs=174.5

Q ss_pred             EEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC-C
Q 047486          401 YLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG-K  479 (776)
Q Consensus       401 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~-~  479 (776)
                      .++.+++.++ .+|..+   ++++++|+|++|+|+++.+.+|.++++|++|++++|++....+..+..+..++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3556666666 666543   3467888888888887777778888888888888888887777777778888887664 5


Q ss_pred             CccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecc
Q 047486          480 NMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYM  559 (776)
Q Consensus       480 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~  559 (776)
                      +.+....+.+|.++++|++|++++|.+....+..  +...++|+.+++++|.+++ +|...|..                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~l~l~~N~l~~-i~~~~f~~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL--FRGLAALQYLYLQDNALQA-LPDDTFRD----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECCSSCCCC-CCTTTTTT----------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccc--cchhcccchhhhccccccc-cChhHhcc----------------
Confidence            6666666777888888888888888776544333  2557778888888888874 44433332                


Q ss_pred             cCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEec
Q 047486          560 GGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDL  639 (776)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  639 (776)
                                             ++.++.|++++|++++..+.+|.++++|+.+++++|++++..|..|.++++|++||+
T Consensus       152 -----------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         152 -----------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             -----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -----------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence                                   456688888899888888888888999999999999999888889999999999999


Q ss_pred             cCccCcCCCchhhccccccccccCccCcceecC
Q 047486          640 SFNKLDGRIPEQLLSVTALALLNLSYNRLWGRI  672 (776)
Q Consensus       640 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  672 (776)
                      ++|++.+..|..|..+++|++|++++|++.+.-
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             cccccccccccccccccccCEEEecCCCCCCCc
Confidence            999998888888888899999999988887643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.9e-23  Score=206.75  Aligned_cols=234  Identities=20%  Similarity=0.180  Sum_probs=137.7

Q ss_pred             CCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC-CCcCCccCcccccCCCCccEE
Q 047486          373 PSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK-NNSLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       373 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L  451 (776)
                      +.+++|+|++|++++..+.+|.+++.|++|++++|++.+..+..+... ..+..+... .+.++...+..|.++++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc-ccccccccccccccccccchhhcccccCCEE
Confidence            345566666666665555566666666666666666663333333323 245555543 445555556666666666666


Q ss_pred             EcCCCcCcCCCChhhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCc
Q 047486          452 DLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE  531 (776)
Q Consensus       452 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~  531 (776)
                      ++++|.+....+..+..+++|+.+++++|++++..+.+|..+++|+.|++++|++.+..+                    
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~--------------------  170 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--------------------  170 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--------------------
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch--------------------
Confidence            666666665555556666666666666666665555555555555555555555543222                    


Q ss_pred             CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCC
Q 047486          532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK  611 (776)
Q Consensus       532 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  611 (776)
                             ..|.+                                       ++.|+.+++++|++++..|..|..+++|+
T Consensus       171 -------~~f~~---------------------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         171 -------RAFRG---------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             -------TTTTT---------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -------hhhcc---------------------------------------ccccchhhhhhccccccChhHhhhhhhcc
Confidence                   22221                                       34456666666666666667777777777


Q ss_pred             EEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccCccCcceecCCC
Q 047486          612 VLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLWGRIPR  674 (776)
Q Consensus       612 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  674 (776)
                      .|++++|++.+..|..|+++++|+.|+|++|++.+.-+.. .-...++.+....+++.+..|.
T Consensus       205 ~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCch
Confidence            7777777777766677777777777777777776543311 1123355566666666665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-21  Score=193.42  Aligned_cols=201  Identities=21%  Similarity=0.224  Sum_probs=124.3

Q ss_pred             CCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcE
Q 047486          395 SLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV  474 (776)
Q Consensus       395 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  474 (776)
                      ....+.+++.+++.++ .+|+.+.   +++++|+|++|+|+++.+..|.++++|++|+|++|+++.. | .++.+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccc
Confidence            3445666777777777 6676542   3677777777777776667777777777777777777643 2 2456677777


Q ss_pred             EEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccC
Q 047486          475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQG  554 (776)
Q Consensus       475 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~  554 (776)
                      |++++|+++.. +..+..+++|++|++++|.+.+..+...  ..+                                   
T Consensus        82 L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l-----------------------------------  123 (266)
T d1p9ag_          82 LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--RGL-----------------------------------  123 (266)
T ss_dssp             EECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTT--TTC-----------------------------------
T ss_pred             ccccccccccc-ccccccccccccccccccccceeecccc--ccc-----------------------------------
Confidence            77777776543 4445556666666665555543222211  223                                   


Q ss_pred             ceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCC
Q 047486          555 RLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTAL  634 (776)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  634 (776)
                                                   ..++.|++++|.+++..+..+..++.|+.|++++|++++..+..|..+++|
T Consensus       124 -----------------------------~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_         124 -----------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             -----------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             -----------------------------cccccccccccccceeccccccccccchhcccccccccccCcccccccccc
Confidence                                         344555555555555555555666666666666666666666666666666


Q ss_pred             cEEeccCccCcCCCchhhccccccccccCccCcce
Q 047486          635 ESLDLSFNKLDGRIPEQLLSVTALALLNLSYNRLW  669 (776)
Q Consensus       635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  669 (776)
                      ++|||++|+|+ .+|+.+..+++|+.|+|++|++.
T Consensus       175 ~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            66666666666 55666666666666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-20  Score=186.87  Aligned_cols=197  Identities=21%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSK  192 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  192 (776)
                      +.++|.++++++ .+|..+.  +++++|+|++|.+++..+.+|.++++|++|+|++|.++. ++ .++.+++|++|++++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            333444444444 2343332  344444555444443333444444555555555554442 22 133444455555555


Q ss_pred             CcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcccc
Q 047486          193 NMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTS  272 (776)
Q Consensus       193 n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~  272 (776)
                      |+++...+.+..+++|+.|++++|.+....+..+..+.++++|++++|.+. .++...+..+++++.+++++|+++.++.
T Consensus        87 N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ccccccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccCc
Confidence            544443333333344555555555444444444445555555555555554 3444445555555555555555444332


Q ss_pred             ccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccc
Q 047486          273 SANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQ  319 (776)
Q Consensus       273 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~  319 (776)
                      ..    +..+++|++|++++|.++.+|..+..+++|+.|+|++|.+.
T Consensus       166 ~~----~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         166 GL----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TT----TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cc----cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            21    23345555555555555555544445555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=1.4e-17  Score=173.96  Aligned_cols=69  Identities=35%  Similarity=0.484  Sum_probs=37.3

Q ss_pred             CCCCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEE
Q 047486          372 PPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSL  451 (776)
Q Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  451 (776)
                      +++|++|++++|++. .+|..   +++|+.|++++|+++ .+|+.    .++|++|++++|+++. +|..   ..+|+.|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~----~~~L~~L~L~~N~L~~-lp~~---~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL----PQNLKQLHVEYNPLRE-FPDI---PESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc----cCCCCEEECcCCcCCC-CCcc---ccccCee
Confidence            445556666666555 33432   456666666666666 55542    2356777777776653 3332   2345555


Q ss_pred             Ec
Q 047486          452 DL  453 (776)
Q Consensus       452 ~L  453 (776)
                      .+
T Consensus       350 ~~  351 (353)
T d1jl5a_         350 RM  351 (353)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=4.1e-17  Score=170.38  Aligned_cols=315  Identities=22%  Similarity=0.236  Sum_probs=212.7

Q ss_pred             CCCCEEeCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCC
Q 047486           32 TKLSLLHLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELD  111 (776)
Q Consensus        32 ~~L~~L~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~  111 (776)
                      .++++|||+++.++.. |+.    +++|++|+|++|.|+ .+|+.+   .+|+.|++++| .++. ++..      .  .
T Consensus        38 ~~l~~LdLs~~~L~~l-p~~----~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n-~l~~-l~~l------p--~   98 (353)
T d1jl5a_          38 RQAHELELNNLGLSSL-PEL----PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNN-NLKA-LSDL------P--P   98 (353)
T ss_dssp             HTCSEEECTTSCCSCC-CSC----CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSS-CCSC-CCSC------C--T
T ss_pred             cCCCEEEeCCCCCCCC-CCC----CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhc-ccch-hhhh------c--c
Confidence            4688899998888754 532    378899999999888 677653   57888888888 5542 2211      0  1


Q ss_pred             CCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 047486          112 LLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLS  191 (776)
Q Consensus       112 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  191 (776)
                      .|++|++++|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+++..+...  .+..+..++.++.++++
T Consensus        99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred             ccccccccccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccc
Confidence            2899999999888 4553 67889999999998887633 32   3456777887776654  34457788889999999


Q ss_pred             CCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccc
Q 047486          192 KNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFT  271 (776)
Q Consensus       192 ~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~  271 (776)
                      +|.........   ...+.+....+.+. .++ .+..++.|+.+++++|... .++    ....++..+.+..+.+...+
T Consensus       171 ~n~~~~~~~~~---~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~----~~~~~l~~~~~~~~~~~~~~  240 (353)
T d1jl5a_         171 NNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYLTDLP  240 (353)
T ss_dssp             SSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCC----SCCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccccc---cccccccccccccc-ccc-ccccccccccccccccccc-ccc----cccccccccccccccccccc
Confidence            88776533322   34456666666554 333 3567889999999988765 332    34567888888888765433


Q ss_pred             cccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecccCccccccCCCcccCCccCCeEeCcCccccccccccc
Q 047486          272 SSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLSNNRIQGRISKSDSPGWKSLIDLDLSNNFMTHIELHPW  351 (776)
Q Consensus       272 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  351 (776)
                      .        ..+.+...++..+.+..++..   .......++..+.+.+ ++    ..+++|++|++++|+++.++ ..+
T Consensus       241 ~--------~~~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~-~~----~~~~~L~~L~Ls~N~l~~lp-~~~  303 (353)
T d1jl5a_         241 E--------LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELP-ALP  303 (353)
T ss_dssp             C--------CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCC-CCC
T ss_pred             c--------ccccccccccccccccccccc---cchhcccccccCcccc-cc----ccCCCCCEEECCCCccCccc-ccc
Confidence            2        235666677666655544321   1234455666666552 22    33577888888888888765 346


Q ss_pred             cccCEEeccCcccCCCCCCCCCCCcEEEccCCcCccCCCccccCCCCCCEEEcc
Q 047486          352 MNITTLDLRNNRIQGSILVPPPSTKVLLVSNNKLSGKIPPSICSLSSLQYLSLS  405 (776)
Q Consensus       352 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls  405 (776)
                      ++|+.|++++|+++ .++..+++|++|++++|+++ .+|..   ..+|+.|.+.
T Consensus       304 ~~L~~L~L~~N~L~-~l~~~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         304 PRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN  352 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred             CCCCEEECCCCcCC-ccccccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence            78888888888887 45666778999999999887 45543   2356777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-20  Score=205.74  Aligned_cols=86  Identities=16%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             CCCEEeCCCCCCccccCChhHhhcCCCCCCEEeCCCccCCCCC----hhhHhhccCCccEEEcCCCCCCcc----CCCCC
Q 047486            6 KLTHLDLSFCVLTIEQRTFDLLASNLTKLSLLHLGATNMSLIK----PFSLLNLSSTMTDLDLGGTRIKGN----FPDDI   77 (776)
Q Consensus         6 ~L~~L~Ls~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~~L~~L~Ls~~~l~~~----~~~~l   77 (776)
                      +|++||++++++++  ..+...+..++++++|+|++|.++...    +..+... ++|++|+|++|.++..    +...+
T Consensus         3 ~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~-~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcC-CCCCEEECcCCcCChHHHHHHHHHH
Confidence            57888888888862  345566777888888888888876432    3344556 7788888888877521    22222


Q ss_pred             C-CCCCCCEEeccCCCCcc
Q 047486           78 F-RLPNLQILFLNLNSQLT   95 (776)
Q Consensus        78 ~-~l~~L~~L~Ls~n~~~~   95 (776)
                      . ...+|++|++++| .++
T Consensus        80 ~~~~~~L~~L~L~~n-~it   97 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNC-CLT   97 (460)
T ss_dssp             CSTTCCCCEEECTTS-CCB
T ss_pred             hcCCCCCCEEECCCC-Ccc
Confidence            2 1235566666555 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.7e-19  Score=196.08  Aligned_cols=315  Identities=21%  Similarity=0.178  Sum_probs=169.9

Q ss_pred             cccceEecccCccccccCC---CcccCCccCCeEeCcCcccccccccccc-ccCEEeccCcccCCCCCCCCCCCcEEEcc
Q 047486          306 EELYLLDLSNNRIQGRISK---SDSPGWKSLIDLDLSNNFMTHIELHPWM-NITTLDLRNNRIQGSILVPPPSTKVLLVS  381 (776)
Q Consensus       306 ~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  381 (776)
                      .+|++|++++|.+++....   ..+..+++|++|++++|.++......+. .+.              ............
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~--------------~~~~~~~~~~~~  149 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL--------------DPQCRLEKLQLE  149 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT--------------STTCCCCEEECT
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccc--------------cccccccccccc
Confidence            4688888888887643211   1124567788888888776654322110 000              000111122222


Q ss_pred             CCcCccC----CCccccCCCCCCEEEccCCcCccc----CCchhhhcCCCccEEECCCCcCCcc----CcccccCCCCcc
Q 047486          382 NNKLSGK----IPPSICSLSSLQYLSLSDNNLSGT----IPPCLGNFSTELITLHLKNNSLEGH----IHDTFANASHLR  449 (776)
Q Consensus       382 ~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~  449 (776)
                      ...+...    ....+.....++.++++++.....    ....+.........+++.++.+...    ....+...+.++
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  229 (460)
T d1z7xw1         150 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  229 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            2221110    011123345566666666654321    1111222222455666666655422    112334556677


Q ss_pred             EEEcCCCcCcCC-----CChhhhcCCCCcEEEcCCCccCccc----chhhcCCCCcCEEEccCCcccccCCCCC---CCc
Q 047486          450 SLDLNSNKLEGP-----LPRSLAKCIKLEVVNVGKNMISDSF----PCWLGSLHELKILVLRSNRFYGPLCNSN---ITF  517 (776)
Q Consensus       450 ~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~  517 (776)
                      .+++++|.+...     .+........++.+++++|.+....    ..++...+.++.+++++|++........   ...
T Consensus       230 ~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~  309 (460)
T d1z7xw1         230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  309 (460)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             ccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            777777765421     2223344567777777777665432    2334566777777777777653211100   011


Q ss_pred             CCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCccc
Q 047486          518 PFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFH  597 (776)
Q Consensus       518 ~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  597 (776)
                      ....|+.+++++|.++...       ...+.                             ........|+.|+|++|+++
T Consensus       310 ~~~~L~~l~l~~~~l~~~~-------~~~l~-----------------------------~~~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         310 PGCQLESLWVKSCSFTAAC-------CSHFS-----------------------------SVLAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGG-------HHHHH-----------------------------HHHHHCSSCCEEECCSSBCH
T ss_pred             cccccccccccccchhhhh-------hhhcc-----------------------------cccccccchhhhheeeeccc
Confidence            2356788888888776321       11110                             11122457888999998887


Q ss_pred             cc----chhhhc-cCCCCCEEeCCCCcCccc----CCccccccCCCcEEeccCccCcCCCchhhc-----cccccccccC
Q 047486          598 GE----IPEVLG-NFKSLKVLNLSHNSLTGN----IPVSFENMTALESLDLSFNKLDGRIPEQLL-----SVTALALLNL  663 (776)
Q Consensus       598 ~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~l  663 (776)
                      +.    +++.+. ..+.|++|+|++|.++..    +++.+..+++|++|||++|+++......+.     +...|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            53    333343 456789999999988753    445566778899999999988754333332     2346888888


Q ss_pred             ccCccee
Q 047486          664 SYNRLWG  670 (776)
Q Consensus       664 s~N~l~g  670 (776)
                      ++|.+..
T Consensus       434 ~~~~~~~  440 (460)
T d1z7xw1         434 YDIYWSE  440 (460)
T ss_dssp             TTCCCCH
T ss_pred             CCCCCCH
Confidence            8888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.6e-18  Score=166.69  Aligned_cols=222  Identities=13%  Similarity=0.090  Sum_probs=164.5

Q ss_pred             CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCC-ChhhhcCCCCcEEEcC
Q 047486          400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPL-PRSLAKCIKLEVVNVG  478 (776)
Q Consensus       400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~  478 (776)
                      +.++.++..++ .+|+.+.   +++++|++++|+|+.+.+.+|.++++|++|++++|.+...+ +.+|.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            56777777777 7776553   47899999999998877778999999999999999887644 4578889999998875


Q ss_pred             -CCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCcee
Q 047486          479 -KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLE  557 (776)
Q Consensus       479 -~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~  557 (776)
                       .|.+....+.+|.++++|+++++++|.+....+.. ....+..+..+..+++.+. .++...|.++             
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~-------------  151 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIH-TIERNSFVGL-------------  151 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT-TTCBSSCEEEEEESCTTCC-EECTTSSTTS-------------
T ss_pred             ccccccccccccccccccccccccchhhhccccccc-ccccccccccccccccccc-cccccccccc-------------
Confidence             46788788888899999999999999886533222 2234555666666666665 2333222211             


Q ss_pred             cccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCC-EEeCCCCcCcccCCccccccCCCcE
Q 047486          558 YMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLK-VLNLSHNSLTGNIPVSFENMTALES  636 (776)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~  636 (776)
                                               ...++.+++++|+++...+..+. ..+++ .+++++|+++...+..|.++++|++
T Consensus       152 -------------------------~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         152 -------------------------SFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVI  205 (242)
T ss_dssp             -------------------------BSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSE
T ss_pred             -------------------------cccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCE
Confidence                                     23568899999999965555554 45544 4567888898666667899999999


Q ss_pred             EeccCccCcCCCchhhccccccccccCccC
Q 047486          637 LDLSFNKLDGRIPEQLLSVTALALLNLSYN  666 (776)
Q Consensus       637 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  666 (776)
                      |||++|+++...+..|.+++.|+++++.+.
T Consensus       206 L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         206 LDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             EECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             EECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            999999999766678999999998887543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.5e-17  Score=158.94  Aligned_cols=187  Identities=25%  Similarity=0.360  Sum_probs=108.3

Q ss_pred             cCCCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 047486          109 ELDLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSI  188 (776)
Q Consensus       109 ~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  188 (776)
                      .+.+|++|++.+|.++. + +.+..+++|++|++++|.+++..|  +.++++|+++++++|.++ .++ .+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccc
Confidence            33445555555555553 2 235556666666666666554322  566666666666666555 222 35566666666


Q ss_pred             EccCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCC
Q 047486          189 DLSKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLL  268 (776)
Q Consensus       189 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~  268 (776)
                      +++++...+..+.... +.++.+.++.+.+..  ...+..+++|++|++++|.+.+.   ..+.++++|++|++++|+++
T Consensus       113 ~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGL-SNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCCCGGGTTC-TTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccchhccc-cchhhhhchhhhhch--hhhhccccccccccccccccccc---hhhcccccceecccCCCccC
Confidence            6666655443332222 566666666666542  23355667777777777766522   33666777777777777765


Q ss_pred             ccccccccccccCCCCccEEeccCCCCCCcchhhhCCcccceEecc
Q 047486          269 SFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYLLDLS  314 (776)
Q Consensus       269 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~L~L~  314 (776)
                      ++++      +..+++|++|++++|+++.+++ +.++++|+.|+++
T Consensus       187 ~l~~------l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DISP------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CCGG------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             CChh------hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            5432      2356666777777666666654 5666777777665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.7e-17  Score=159.75  Aligned_cols=203  Identities=17%  Similarity=0.263  Sum_probs=136.0

Q ss_pred             EEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCc
Q 047486          402 LSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNM  481 (776)
Q Consensus       402 L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  481 (776)
                      ++++.+++++.++  ...+. +|+.|++.+|.|+..  ..+..+++|++|++++|++++..|  +..+++|+.+++++|.
T Consensus        24 ~~l~~~~~~d~~~--~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTVT--QADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEEC--HHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcCC--HHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            4455555553332  22333 577777777776643  246667777777777777765433  6677777777777777


Q ss_pred             cCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccC
Q 047486          482 ISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGG  561 (776)
Q Consensus       482 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~  561 (776)
                      ++..  ..+..+++|+.+.++++...+..+    ....+.+..++++.+.+....+.                       
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~-----------------------  147 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISPL-----------------------  147 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGGG-----------------------
T ss_pred             cccc--ccccccccccccccccccccccch----hccccchhhhhchhhhhchhhhh-----------------------
Confidence            6643  246677777777777776654322    13456677777777776532211                       


Q ss_pred             ccccceEEEEeccchhhHHHhhcceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccC
Q 047486          562 AFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSF  641 (776)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  641 (776)
                                         ...+.++.|++++|.+++..  .++++++|+.|+|++|++++. | .++++++|++|+|++
T Consensus       148 -------------------~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         148 -------------------AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKN  204 (227)
T ss_dssp             -------------------GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTT
T ss_pred             -------------------ccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcC
Confidence                               11456788888888887543  388899999999999998853 3 378899999999999


Q ss_pred             ccCcCCCchhhccccccccccCcc
Q 047486          642 NKLDGRIPEQLLSVTALALLNLSY  665 (776)
Q Consensus       642 N~l~~~~p~~l~~l~~L~~L~ls~  665 (776)
                      |++++. | .++++++|++|++++
T Consensus       205 N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         205 NQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             CcCCCC-c-ccccCCCCCEEEeeC
Confidence            998854 3 378889999998863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-16  Score=155.86  Aligned_cols=202  Identities=14%  Similarity=0.060  Sum_probs=110.1

Q ss_pred             CCcEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECC-CCcCCccCcccccCCCCccEEE
Q 047486          374 STKVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLK-NNSLEGHIHDTFANASHLRSLD  452 (776)
Q Consensus       374 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  452 (776)
                      ++++|++++|++....+.+|.++++|++|++++|.+.+.++...+...+.++++.+. .|.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            455555555555544444555666666666666655433333222222245555443 2344444445555555555555


Q ss_pred             cCCCcCcCCCCh-hhhcCCCCcEEEcCCCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCc
Q 047486          453 LNSNKLEGPLPR-SLAKCIKLEVVNVGKNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNE  531 (776)
Q Consensus       453 L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~  531 (776)
                      +++|.+....+. .+..++.+..+..+++.+....+..|.++                         ...++.+++++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~-------------------------~~~l~~L~l~~n~  164 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-------------------------SFESVILWLNKNG  164 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS-------------------------BSSCEEEECCSSC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccc-------------------------cccceeeeccccc
Confidence            555555432221 12223333333333333333222222222                         2246667777777


Q ss_pred             CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcce-eEEecCCCcccccchhhhccCCCC
Q 047486          532 FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMF-RAMDFSRNRFHGEIPEVLGNFKSL  610 (776)
Q Consensus       532 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~Ls~n~l~~~~p~~l~~l~~L  610 (776)
                      ++. ++...|.                                        ...+ +.+++++|+++...+..|.++++|
T Consensus       165 l~~-i~~~~~~----------------------------------------~~~l~~~~~l~~n~l~~l~~~~f~~l~~L  203 (242)
T d1xwdc1         165 IQE-IHNCAFN----------------------------------------GTQLDELNLSDNNNLEELPNDVFHGASGP  203 (242)
T ss_dssp             CCE-ECTTTTT----------------------------------------TCCEEEEECTTCTTCCCCCTTTTTTSCCC
T ss_pred             ccc-ccccccc----------------------------------------chhhhccccccccccccccHHHhcCCCCC
Confidence            662 3332221                                        1222 344677888886666679999999


Q ss_pred             CEEeCCCCcCcccCCccccccCCCcEEeccC
Q 047486          611 KVLNLSHNSLTGNIPVSFENMTALESLDLSF  641 (776)
Q Consensus       611 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  641 (776)
                      ++|+|++|+++...+..|.+++.|+.+++.+
T Consensus       204 ~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         204 VILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            9999999999976677788888888877654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=6.7e-17  Score=152.14  Aligned_cols=132  Identities=26%  Similarity=0.292  Sum_probs=94.0

Q ss_pred             ccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEEccCCcccccccccccCCCCCC
Q 047486           59 MTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLDIGFCNFTGSIPTSIGNLTRAT  138 (776)
Q Consensus        59 L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  138 (776)
                      .++++.++++++ .+|..+.  +++++|+|++| .+++.++...    |.++.+|++|++++|.+....+..+..+++|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N-~i~~~~~~~~----f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDN-ELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSC-CCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCC-CCcccccccc----cCCCceEeeeeccccccccccccccccccccc
Confidence            456677777776 5665553  56777777777 6654443321    55566677777777777777777777778888


Q ss_pred             EEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCCc
Q 047486          139 EIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNGP  198 (776)
Q Consensus       139 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  198 (776)
                      +|++++|+++...|.+|.++++|++|+|++|.+++..+.+|..+++|++|++++|.+...
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            888888888777777778888888888888888777777777788888888877776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=8.6e-16  Score=146.63  Aligned_cols=179  Identities=27%  Similarity=0.340  Sum_probs=91.5

Q ss_pred             eCCCccCCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCCCcEEE
Q 047486           38 HLGATNMSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDLLSVLD  117 (776)
Q Consensus        38 ~L~~~~~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~L~~L~  117 (776)
                      +++.+.+.+.++.  ..+ .+|++|++++|.++. ++ .+..+++|++|++++| .+++..|       +..+++|++|+
T Consensus        30 ~l~~~~~~~~~~~--~~L-~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n-~i~~l~~-------~~~l~~L~~L~   96 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGN-KLTDIKP-------LANLKNLGWLF   96 (210)
T ss_dssp             HTTCSCTTSEECH--HHH-HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEE
T ss_pred             HhCcCccCCccCH--HHh-cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCc-cccCccc-------cccCccccccc
Confidence            4555555544332  234 566666666666653 22 2455566666666665 4443111       33344455555


Q ss_pred             ccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcCCC
Q 047486          118 IGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKNMLNG  197 (776)
Q Consensus       118 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  197 (776)
                      +++|++++ +| .+..+++|+.|++++|.+..  ...+..++.++.+++++|.+++  +..+..+               
T Consensus        97 l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l---------------  155 (210)
T d1h6ta2          97 LDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRL---------------  155 (210)
T ss_dssp             CCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGC---------------
T ss_pred             cccccccc-cc-cccccccccccccccccccc--cccccccccccccccccccccc--ccccccc---------------
Confidence            55555542 22 34455555555555554432  1234445555555555555442  1223344               


Q ss_pred             cCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEecc
Q 047486          198 PIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLS  263 (776)
Q Consensus       198 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  263 (776)
                              ++|+++++++|.+++ ++ .+.++++|++|++++|+++ .++  .+.++++|++|+|+
T Consensus       156 --------~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         156 --------TKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             --------TTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEEEE
T ss_pred             --------ccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh--hhcCCCCCCEEEcc
Confidence                    445555555555543 22 2566677777777777765 343  46677777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1e-15  Score=146.14  Aligned_cols=79  Identities=25%  Similarity=0.341  Sum_probs=36.2

Q ss_pred             ccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCccccccccccccCCCCccEEeccCCCCCCcchhhhCC
Q 047486          226 TFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSFTSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNS  305 (776)
Q Consensus       226 ~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~  305 (776)
                      +..+++++.+++++|.+++.   ..+..+++|+++++++|++..+++      +..+++|++|++++|.++.+| .+.++
T Consensus       130 l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l~~i~~------l~~l~~L~~L~Ls~N~i~~l~-~l~~l  199 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDLR-ALAGL  199 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBCG-GGTTC
T ss_pred             cccccccccccccccccccc---cccccccccccccccccccccccc------ccCCCCCCEEECCCCCCCCCh-hhcCC
Confidence            44445555555555544421   223444455555555554433221      223444444444444444444 24555


Q ss_pred             cccceEecc
Q 047486          306 EELYLLDLS  314 (776)
Q Consensus       306 ~~L~~L~L~  314 (776)
                      ++|++|+|+
T Consensus       200 ~~L~~L~Ls  208 (210)
T d1h6ta2         200 KNLDVLELF  208 (210)
T ss_dssp             TTCSEEEEE
T ss_pred             CCCCEEEcc
Confidence            555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2e-15  Score=142.71  Aligned_cols=12  Identities=17%  Similarity=0.069  Sum_probs=5.9

Q ss_pred             CCCCCEEeccCC
Q 047486           80 LPNLQILFLNLN   91 (776)
Q Consensus        80 l~~L~~L~Ls~n   91 (776)
                      ++++++|++++|
T Consensus        39 l~~l~~L~l~~~   50 (199)
T d2omxa2          39 LDQVTTLQADRL   50 (199)
T ss_dssp             HTTCCEEECTTS
T ss_pred             hcCCCEEECCCC
Confidence            444555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.3e-15  Score=142.35  Aligned_cols=159  Identities=25%  Similarity=0.340  Sum_probs=69.0

Q ss_pred             CCCcEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEc
Q 047486          111 DLLSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDL  190 (776)
Q Consensus       111 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  190 (776)
                      .++++|++++|.++. + +.+..+++|++|++++|.+++..|  ++++++|++|++++|.+.. ++ .+.++++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccccc
Confidence            334555555554442 1 124444444444444444443211  4444444444444444431 22 2344444444444


Q ss_pred             cCCcCCCcCCCCCCCCCCcEEEccCCcCCCCCCccccCCCCCCEEECCCCcCccccCccccCCCCCCCEEeccCCCCCcc
Q 047486          191 SKNMLNGPIDLFQLPNSLQDVRLEENEIRGTIPNSTFQLVNLTILDLSSNNLSGAIRFDQFSKLKKLQFLDLSNNSLLSF  270 (776)
Q Consensus       191 ~~n~l~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~i~~~  270 (776)
                      ++|.....                         ..+..+++|+.|++++|++. .+  ..+..+++|++|++++|+++.+
T Consensus       114 ~~~~~~~~-------------------------~~~~~l~~L~~L~l~~n~l~-~~--~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         114 FNNQITDI-------------------------DPLKNLTNLNRLELSSNTIS-DI--SALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CSSCCCCC-------------------------GGGTTCTTCSEEECCSSCCC-CC--GGGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccc-------------------------cccchhhhhHHhhhhhhhhc-cc--ccccccccccccccccccccCC
Confidence            44433321                         22444555555555555544 22  2344555555555555554333


Q ss_pred             ccccccccccCCCCccEEeccCCCCCCcchhhhCCcccce
Q 047486          271 TSSANISIKYSLPSLKVLRFAYCNITEFPGFLRNSEELYL  310 (776)
Q Consensus       271 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~~~~L~~  310 (776)
                      ++      +..+++|++|++++|+++.++. +..+++|+.
T Consensus       166 ~~------l~~l~~L~~L~ls~N~i~~i~~-l~~L~~L~~  198 (199)
T d2omxa2         166 KP------LANLTTLERLDISSNKVSDISV-LAKLTNLES  198 (199)
T ss_dssp             GG------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred             cc------ccCCCCCCEEECCCCCCCCCcc-ccCCCCCCc
Confidence            21      2234444444444444444432 444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.8e-16  Score=147.82  Aligned_cols=129  Identities=24%  Similarity=0.328  Sum_probs=93.6

Q ss_pred             CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCc-cCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcC
Q 047486          400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEG-HIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVG  478 (776)
Q Consensus       400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  478 (776)
                      ++++.++++++ .+|..+   ++++++|+|++|.|++ ..+..|.++++|+.|+|++|.+.+..+..|..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46677777776 677654   2467777777777765 345667777778888888887777777777777788888888


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCcccccCCCCCCCcCCCCccEEeCCCCcCCC
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNRFYGPLCNSNITFPFQALRIIDLSHNEFTG  534 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~LdLs~n~l~~  534 (776)
                      +|+++...+.+|.++++|++|+|++|++++..+..+  ..+++|++++|++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCccccccccccccccc
Confidence            888777777777777888888888877776555443  566777788887777764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.2e-15  Score=153.07  Aligned_cols=207  Identities=17%  Similarity=0.193  Sum_probs=113.4

Q ss_pred             CccEEECCCCcCCcc-CcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCC-ccCccc-chhhcCCCCcCEE
Q 047486          423 ELITLHLKNNSLEGH-IHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKN-MISDSF-PCWLGSLHELKIL  499 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L  499 (776)
                      +|++|++++|.++.. +...+..+++|++|+|++|.+++..+..+..+++|+.|++++| .+++.. ......+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            566666666665532 2344556666666666666666555556666666666666664 344321 1223456666666


Q ss_pred             EccCCc-ccccCCCCCCCcCCCCccEEeCCCCc--CCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccch
Q 047486          500 VLRSNR-FYGPLCNSNITFPFQALRIIDLSHNE--FTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHD  576 (776)
Q Consensus       500 ~L~~n~-l~~~~~~~~~~~~l~~L~~LdLs~n~--l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (776)
                      +++++. ++............+.|+.|+++++.  ++.    .      .+                             
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~----~------~l-----------------------------  167 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----S------DL-----------------------------  167 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH----H------HH-----------------------------
T ss_pred             ccccccccccccchhhhcccccccchhhhccccccccc----c------cc-----------------------------
Confidence            666642 22110000001123456666665542  110    0      00                             


Q ss_pred             hhHHHhhcceeEEecCCC-cccccchhhhccCCCCCEEeCCCC-cCcccCCccccccCCCcEEeccCccCcCCCchhhcc
Q 047486          577 FQLQKILVMFRAMDFSRN-RFHGEIPEVLGNFKSLKVLNLSHN-SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLS  654 (776)
Q Consensus       577 ~~~~~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  654 (776)
                      ......++.|+.|++++| .+++..+..+..+++|++|+|++| .+++.....++++++|+.|+++++--.+.++.....
T Consensus       168 ~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~  247 (284)
T d2astb2         168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA  247 (284)
T ss_dssp             HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHH
T ss_pred             cccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHh
Confidence            011223667788888775 466667777788888888888884 576666667777888888888877222222222223


Q ss_pred             ccccccccCccCcceec
Q 047486          655 VTALALLNLSYNRLWGR  671 (776)
Q Consensus       655 l~~L~~L~ls~N~l~g~  671 (776)
                      +   ..|.+..+++++.
T Consensus       248 l---p~L~i~~~~ls~~  261 (284)
T d2astb2         248 L---PHLQINCSHFTTI  261 (284)
T ss_dssp             S---TTSEESCCCSCCT
T ss_pred             C---ccccccCccCCCC
Confidence            3   3344555666544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.4e-15  Score=146.73  Aligned_cols=225  Identities=18%  Similarity=0.193  Sum_probs=160.0

Q ss_pred             CEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCC-CChhhhcCCCCcEEEcC
Q 047486          400 QYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGP-LPRSLAKCIKLEVVNVG  478 (776)
Q Consensus       400 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~  478 (776)
                      +++|++++.+.......+...  ....+.++...+...... .....+|++|++++|.++.. ++..+..|++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHHT--TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHhc--cceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            367888776643333223222  356677766655433333 23456899999999998754 44567889999999999


Q ss_pred             CCccCcccchhhcCCCCcCEEEccCCc-ccccCCCCCCCcCCCCccEEeCCCCc-CCCCCCcccccChHHhhhccccCce
Q 047486          479 KNMISDSFPCWLGSLHELKILVLRSNR-FYGPLCNSNITFPFQALRIIDLSHNE-FTGFLPRRIFPSMEAMKNVDEQGRL  556 (776)
Q Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~LdLs~n~-l~~~~p~~~~~~l~~l~~l~~~~~~  556 (776)
                      +|.+++..+..+..+++|++|++++|. ++...... ....+++|++|+++++. ++..   .       +         
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~~~~~~L~~L~ls~c~~~~~~---~-------~---------  139 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEK---H-------V---------  139 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHH---H-------H---------
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccch-hhHHHHhccccccccccccccc---c-------c---------
Confidence            999998888999999999999999964 43211100 12357899999999874 3210   0       0         


Q ss_pred             ecccCccccceEEEEeccchhhHHHhhcceeEEecCCC--ccccc-chhhhccCCCCCEEeCCCC-cCcccCCccccccC
Q 047486          557 EYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRN--RFHGE-IPEVLGNFKSLKVLNLSHN-SLTGNIPVSFENMT  632 (776)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~  632 (776)
                                         .......++.|+.|+++++  .++.. +...+.++++|++|++++| .+++..+..+.+++
T Consensus       140 -------------------~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         140 -------------------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             -------------------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             -------------------hhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence                               0001122567899999975  35433 3344567899999999986 57877888899999


Q ss_pred             CCcEEeccCc-cCcCCCchhhccccccccccCccC
Q 047486          633 ALESLDLSFN-KLDGRIPEQLLSVTALALLNLSYN  666 (776)
Q Consensus       633 ~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~ls~N  666 (776)
                      +|++|+|++| .++......++.+++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999999995 677777778889999999999887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.1e-14  Score=150.74  Aligned_cols=242  Identities=15%  Similarity=0.175  Sum_probs=134.6

Q ss_pred             cccCCCCCCEEEccCCcCcccCCch----hhhcCCCccEEECCCCcCCcc----------CcccccCCCCccEEEcCCCc
Q 047486          392 SICSLSSLQYLSLSDNNLSGTIPPC----LGNFSTELITLHLKNNSLEGH----------IHDTFANASHLRSLDLNSNK  457 (776)
Q Consensus       392 ~~~~~~~L~~L~Ls~n~l~~~~p~~----~~~~~~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~  457 (776)
                      .+.....+++|+|++|.+.......    +... ++|+.++++++.....          +...+..+++|+.|+|++|.
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhC-CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3444555666666666554322112    2222 2566666655443211          12334556677777777777


Q ss_pred             CcCC----CChhhhcCCCCcEEEcCCCccCcccchh-------------hcCCCCcCEEEccCCcccccCCCCC--CCcC
Q 047486          458 LEGP----LPRSLAKCIKLEVVNVGKNMISDSFPCW-------------LGSLHELKILVLRSNRFYGPLCNSN--ITFP  518 (776)
Q Consensus       458 l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~  518 (776)
                      ++..    +...+..+++|+.|++++|.+.......             ....+.|+.+.+++|++........  ....
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            6653    2234455677777777777664321111             1345677777777776643211110  0123


Q ss_pred             CCCccEEeCCCCcCCCCCCcccccChHHhhhccccCceecccCccccceEEEEeccchhhHHHhhcceeEEecCCCcccc
Q 047486          519 FQALRIIDLSHNEFTGFLPRRIFPSMEAMKNVDEQGRLEYMGGAFYDESITVAMQGHDFQLQKILVMFRAMDFSRNRFHG  598 (776)
Q Consensus       519 l~~L~~LdLs~n~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  598 (776)
                      .+.|+.|++++|.++..   ...   ..+                             .+....++.|+.|++++|.++.
T Consensus       185 ~~~L~~L~L~~n~i~~~---g~~---~~l-----------------------------~~~l~~~~~L~~L~Ls~N~i~~  229 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPE---GIE---HLL-----------------------------LEGLAYCQELKVLDLQDNTFTH  229 (344)
T ss_dssp             CTTCCEEECCSSCCCHH---HHH---HHH-----------------------------HTTGGGCTTCCEEECCSSCCHH
T ss_pred             hhhhccccccccccccc---ccc---cch-----------------------------hhhhcchhhhcccccccccccc
Confidence            45677777777776521   000   000                             0001125667888888888764


Q ss_pred             c----chhhhccCCCCCEEeCCCCcCcccCCccc----cc--cCCCcEEeccCccCcCC----Cchhhc-cccccccccC
Q 047486          599 E----IPEVLGNFKSLKVLNLSHNSLTGNIPVSF----EN--MTALESLDLSFNKLDGR----IPEQLL-SVTALALLNL  663 (776)
Q Consensus       599 ~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~----~~--l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~l  663 (776)
                      .    +...+..+++|++|+|++|.+++.....+    ..  .+.|++||+++|++...    +...+. +++.|++|++
T Consensus       230 ~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence            3    34556778888888888888875433333    22  35688888888888642    233342 4677888888


Q ss_pred             ccCcce
Q 047486          664 SYNRLW  669 (776)
Q Consensus       664 s~N~l~  669 (776)
                      ++|++.
T Consensus       310 ~~N~~~  315 (344)
T d2ca6a1         310 NGNRFS  315 (344)
T ss_dssp             TTSBSC
T ss_pred             CCCcCC
Confidence            888885

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.8e-13  Score=122.32  Aligned_cols=131  Identities=15%  Similarity=0.137  Sum_probs=87.1

Q ss_pred             cccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCC
Q 047486          392 SICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIK  471 (776)
Q Consensus       392 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  471 (776)
                      .+.++..+++|+|++|+++ .++..+..+. +|+.|++++|.|+..  +.|..+++|++|++++|+++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~-~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLD-QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTT-CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccc-cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            3556667778888888777 5665444443 688888888877754  34777788888888888887666666677888


Q ss_pred             CcEEEcCCCccCcccc-hhhcCCCCcCEEEccCCcccccCCC-CCCCcCCCCccEEe
Q 047486          472 LEVVNVGKNMISDSFP-CWLGSLHELKILVLRSNRFYGPLCN-SNITFPFQALRIID  526 (776)
Q Consensus       472 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~Ld  526 (776)
                      |+.|++++|++..... ..+..+++|++|++++|++...... ......+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888888765432 4567777788888887777542110 00123456666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.6e-12  Score=111.20  Aligned_cols=118  Identities=25%  Similarity=0.362  Sum_probs=75.3

Q ss_pred             cEEEccCCcCccCCCccccCCCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCCcCCccCcccccCCCCccEEEcCC
Q 047486          376 KVLLVSNNKLSGKIPPSICSLSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNNSLEGHIHDTFANASHLRSLDLNS  455 (776)
Q Consensus       376 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  455 (776)
                      +.|++++|+++. ++ .+..+++|++|++++|+++ .+|+.+..+. +|++|++++|.|++. + .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~-~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALR-CLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhh-ccccccccccccccc-C-ccccccccCeEECCC
Confidence            356677777763 33 3677777777777777776 6666666654 677777777777754 2 467777777777777


Q ss_pred             CcCcCCCC-hhhhcCCCCcEEEcCCCccCccc---chhhcCCCCcCEE
Q 047486          456 NKLEGPLP-RSLAKCIKLEVVNVGKNMISDSF---PCWLGSLHELKIL  499 (776)
Q Consensus       456 n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L  499 (776)
                      |+++.... ..+..+++|+.|++++|++++..   ......+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77765432 45667777777777777765321   2223345555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.39  E-value=1.9e-14  Score=148.96  Aligned_cols=43  Identities=2%  Similarity=-0.094  Sum_probs=23.3

Q ss_pred             hHhhcCCCCCCEEeCCCccCCCCChhh----HhhccCCccEEEcCCCC
Q 047486           25 DLLASNLTKLSLLHLGATNMSLIKPFS----LLNLSSTMTDLDLGGTR   68 (776)
Q Consensus        25 ~~~l~~l~~L~~L~L~~~~~~~~~~~~----~~~l~~~L~~L~Ls~~~   68 (776)
                      ...+.+...|+.|+|++|.+.......    +... ++|+.++++++.
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~l~l~~~~   70 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIF   70 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhC-CCCCEEECCCCc
Confidence            344556666777777766665443222    2233 556666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=121.86  Aligned_cols=31  Identities=23%  Similarity=0.211  Sum_probs=15.4

Q ss_pred             CCCccEEeccCCCCCCcch----hhhCCcccceEe
Q 047486          282 LPSLKVLRFAYCNITEFPG----FLRNSEELYLLD  312 (776)
Q Consensus       282 l~~L~~L~l~~n~l~~lp~----~l~~~~~L~~L~  312 (776)
                      +++|++|++++|.++..|.    .+..+++|+.||
T Consensus       111 l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         111 LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            4444444444444443432    355566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.8e-12  Score=110.96  Aligned_cols=78  Identities=24%  Similarity=0.360  Sum_probs=48.5

Q ss_pred             cEEEccCCcccccccccccCCCCCCEEEccCCcccCCCchhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 047486          114 SVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQLPHHVSGLSYLTTFDLSGNYFQGGVPSWLFTLPSLLSIDLSKN  193 (776)
Q Consensus       114 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  193 (776)
                      |+||+++|+++ .++ .++.+++|++|++++|.++ .+|..|+.+++|++|++++|.+++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            46677777776 333 3666667777777777666 355566666677777777766663 33 3556666666666665


Q ss_pred             cCC
Q 047486          194 MLN  196 (776)
Q Consensus       194 ~l~  196 (776)
                      .+.
T Consensus        76 ~i~   78 (124)
T d1dcea3          76 RLQ   78 (124)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.2e-11  Score=108.90  Aligned_cols=115  Identities=20%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             ceeEEecCCCcccccchhhhccCCCCCEEeCCCC-cCcccCCccccccCCCcEEeccCccCcCCCchhhccccccccccC
Q 047486          585 MFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHN-SLTGNIPVSFENMTALESLDLSFNKLDGRIPEQLLSVTALALLNL  663 (776)
Q Consensus       585 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  663 (776)
                      ....++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.|.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456888888887 46777888999999999776 488777788999999999999999999888889999999999999


Q ss_pred             ccCcceecCCCCCCCCcccccccccccCCCCCCCCCCCCCCCC
Q 047486          664 SYNRLWGRIPRGNQFNTFENDSYIGNIHLCGEPLTVRCSNDGL  706 (776)
Q Consensus       664 s~N~l~g~iP~~~~~~~~~~~~~~~n~~l~g~pl~~~C~~~~~  706 (776)
                      ++|+|+ .+|.+.    |.... .....+.+||+.|+|...|.
T Consensus        88 s~N~l~-~l~~~~----~~~~~-l~~L~L~~Np~~C~C~~~~l  124 (156)
T d2ifga3          88 SFNALE-SLSWKT----VQGLS-LQELVLSGNPLHCSCALRWL  124 (156)
T ss_dssp             CSSCCS-CCCSTT----TCSCC-CCEEECCSSCCCCCGGGHHH
T ss_pred             cCCCCc-ccChhh----hcccc-ccccccCCCcccCCchHHHH
Confidence            999997 556542    22221 33467888999999976543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=1.8e-12  Score=121.26  Aligned_cols=77  Identities=22%  Similarity=0.207  Sum_probs=44.8

Q ss_pred             cceeEEecCCCcccccchhhhccCCCCCEEeCCCCcCcccCC-ccccccCCCcEEeccCccCcCCCchh----------h
Q 047486          584 VMFRAMDFSRNRFHGEIPEVLGNFKSLKVLNLSHNSLTGNIP-VSFENMTALESLDLSFNKLDGRIPEQ----------L  652 (776)
Q Consensus       584 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l  652 (776)
                      +.|+.|++++|+++..  +.+..+++|+.|++++|+++.... ..+..+++|+.|+|++|++....+..          +
T Consensus        93 ~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_          93 DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             cccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            3456666666666642  235666667777777776664321 34666677777777777665433321          4


Q ss_pred             cccccccccc
Q 047486          653 LSVTALALLN  662 (776)
Q Consensus       653 ~~l~~L~~L~  662 (776)
                      ..+++|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            4566666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=6.5e-13  Score=124.42  Aligned_cols=144  Identities=20%  Similarity=0.208  Sum_probs=90.1

Q ss_pred             CCEEeCCCcc-CCCCChhhHhhccCCccEEEcCCCCCCccCCCCCCCCCCCCEEeccCCCCccccCCCCCCCCCcccCCC
Q 047486           34 LSLLHLGATN-MSLIKPFSLLNLSSTMTDLDLGGTRIKGNFPDDIFRLPNLQILFLNLNSQLTGYLPKSNWSSPLRELDL  112 (776)
Q Consensus        34 L~~L~L~~~~-~~~~~~~~~~~l~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~~~l~~L~~  112 (776)
                      ++.+++++.. -...++..+..+ ++|++|+|++|.|+ .++ .+..+++|++|++++| .+. .+|..     ...+..
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L-~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N-~i~-~i~~~-----~~~~~~   94 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRN-LIK-KIENL-----DAVADT   94 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHT-TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEE-EEC-SCSSH-----HHHHHH
T ss_pred             cceeeeecccCchhhhhhHHhcc-cccceeECcccCCC-Ccc-cccCCccccChhhccc-ccc-ccccc-----cccccc
Confidence            4445554431 112235567777 77777777777776 333 4666777777777777 554 23322     122234


Q ss_pred             CcEEEccCCcccccccccccCCCCCCEEEccCCcccCCC-chhhcCCCCCCEEEccCCcCCCCCCc----------cccC
Q 047486          113 LSVLDIGFCNFTGSIPTSIGNLTRATEIAFASNHFTGQL-PHHVSGLSYLTTFDLSGNYFQGGVPS----------WLFT  181 (776)
Q Consensus       113 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~----------~l~~  181 (776)
                      |++|++++|+++. + ..+..+++|++|++++|+++... ...+..+++|++|++++|.+....+.          .+..
T Consensus        95 L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_          95 LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            7888888887774 2 34677788888888888877432 14677888888888888876543322          1556


Q ss_pred             CCCCCEEE
Q 047486          182 LPSLLSID  189 (776)
Q Consensus       182 l~~L~~L~  189 (776)
                      +++|+.||
T Consensus       173 lp~L~~LD  180 (198)
T d1m9la_         173 LPNLKKLD  180 (198)
T ss_dssp             CSSCCEES
T ss_pred             CCCcCEeC
Confidence            88888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=103.63  Aligned_cols=108  Identities=19%  Similarity=0.126  Sum_probs=62.6

Q ss_pred             CCCCCEEEccCCcCcccCCchhhhcCCCccEEECCCC-cCCccCcccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcE
Q 047486          396 LSSLQYLSLSDNNLSGTIPPCLGNFSTELITLHLKNN-SLEGHIHDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEV  474 (776)
Q Consensus       396 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  474 (776)
                      +...+.++.+++.+. ..|..+.... +|++|++++| .++.+.+.+|.++++|+.|+|++|+|+.+.+.+|..+++|++
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            334455666666665 4555554443 5666666544 366665666666666666666666666666666666666666


Q ss_pred             EEcCCCccCcccchhhcCCCCcCEEEccCCcc
Q 047486          475 VNVGKNMISDSFPCWLGSLHELKILVLRSNRF  506 (776)
Q Consensus       475 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  506 (776)
                      |+|++|+++...+..|..+ .|+.|+|++|++
T Consensus        85 L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             eeccCCCCcccChhhhccc-cccccccCCCcc
Confidence            6666666665444444332 355555555544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.6e-07  Score=81.44  Aligned_cols=80  Identities=24%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             hcceeEEecCCCcccccc--hhhhccCCCCCEEeCCCCcCcccCCccccccCCCcEEeccCccCcCCCch-------hhc
Q 047486          583 LVMFRAMDFSRNRFHGEI--PEVLGNFKSLKVLNLSHNSLTGNIPVSFENMTALESLDLSFNKLDGRIPE-------QLL  653 (776)
Q Consensus       583 ~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~  653 (776)
                      ++.|+.|+|++|+|+...  +..+..+++|+.|+|++|.++...+..+.....|+.|++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            566777777777776542  34566677777777777777654433344445667777777777654432       244


Q ss_pred             ccccccccc
Q 047486          654 SVTALALLN  662 (776)
Q Consensus       654 ~l~~L~~L~  662 (776)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-07  Score=84.73  Aligned_cols=62  Identities=32%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             CccEEECCCCcCCccC--cccccCCCCccEEEcCCCcCcCCCChhhhcCCCCcEEEcCCCccCc
Q 047486          423 ELITLHLKNNSLEGHI--HDTFANASHLRSLDLNSNKLEGPLPRSLAKCIKLEVVNVGKNMISD  484 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  484 (776)
                      +|++|++++|+|+...  +..+..+++|+.|+|++|.|+...+-.+.....|+.|++++|++..
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            4555555555554332  2334445555555555555553333222233345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=2.7e-05  Score=69.19  Aligned_cols=15  Identities=40%  Similarity=0.545  Sum_probs=6.8

Q ss_pred             CCCccEEEcCCCcCc
Q 047486          445 ASHLRSLDLNSNKLE  459 (776)
Q Consensus       445 l~~L~~L~L~~n~l~  459 (776)
                      .+.|++|+|++|.++
T Consensus        71 n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          71 SPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECCSSBCC
T ss_pred             cccccceeeehhhcc
Confidence            344444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=1.6e-05  Score=70.67  Aligned_cols=88  Identities=10%  Similarity=0.060  Sum_probs=52.0

Q ss_pred             CCCCCCEEeCCCC-CCccc-cCChhHhhcCCCCCCEEeCCCccCCCCC----hhhHhhccCCccEEEcCCCCCCcc----
Q 047486            3 HLSKLTHLDLSFC-VLTIE-QRTFDLLASNLTKLSLLHLGATNMSLIK----PFSLLNLSSTMTDLDLGGTRIKGN----   72 (776)
Q Consensus         3 ~l~~L~~L~Ls~~-~~~~~-~~~~~~~l~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~~L~~L~Ls~~~l~~~----   72 (776)
                      +.++|++|+|+++ .+..+ -..+...+...++|++|+|++|.+....    ...+... +.|++|+|++|.+...    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n-~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhc-ccccceeeehhhcchHHHHH
Confidence            3567777888764 34311 0123445666777777777777765432    2334444 6777777777777543    


Q ss_pred             CCCCCCCCCCCCEEeccCC
Q 047486           73 FPDDIFRLPNLQILFLNLN   91 (776)
Q Consensus        73 ~~~~l~~l~~L~~L~Ls~n   91 (776)
                      +..++...+.|++|++++|
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence            2334555666666666665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.89  E-value=0.00025  Score=62.72  Aligned_cols=55  Identities=16%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             CccEEECCCCcCCccC----cccccCCCCccEEEcCCCcCcCC----CChhhhcCCCCcEEEc
Q 047486          423 ELITLHLKNNSLEGHI----HDTFANASHLRSLDLNSNKLEGP----LPRSLAKCIKLEVVNV  477 (776)
Q Consensus       423 ~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L  477 (776)
                      .|++|++++|.++...    ...+...++++.+++++|.++..    +...+...++|+.++|
T Consensus        47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            4555555555443221    12233344555555555554422    1123344455554433

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.41  E-value=0.00042  Score=61.12  Aligned_cols=15  Identities=0%  Similarity=-0.024  Sum_probs=6.9

Q ss_pred             CCCCCCEEECCCCcC
Q 047486          228 QLVNLTILDLSSNNL  242 (776)
Q Consensus       228 ~l~~L~~L~Ls~n~l  242 (776)
                      ..++|++|++++|.+
T Consensus        44 ~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          44 TNTYVKKFSIVGTRS   58 (166)
T ss_dssp             TCCSCCEEECTTSCC
T ss_pred             cCCccCeeeccCCcc
Confidence            344444444444444