Citrus Sinensis ID: 047496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQNN
Secondary Structure (PSIPRED)
cccEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccccccccccccccccHHHccccccccEEEccccEEEEcccHHHHHHccccEEcccccEEEEEccccccccccccEEEccccccccccccccccHHcccccccccEEcccccccccccHHHHHHHHHHccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEccccccccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHcHHHcccc
Coil and Loop (DISEMBL)
MLKGIYLGYnklhgeipheIANLRNLEALALGMNNlvgvvsapifnmsTLKIIILINnslfgslpsriglslptvEHLNLELnrfsgtipssitnaSKLTLLKlggntfsglipdtignlrNLEWLGLAYNnltsstskLSFLSSLANCKKLRSlnlignpldgflpssignLSMSLETLLITncsisgnipqaISTKYLFQNN
Flexible Loop (DISEMBL)
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQNN
Low Complexity Region (SEG)
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNltsstsklsflsslANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQNN
Disordered region (IsUnstruct)
***GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF***
Disordered Region (DISOPRED)
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQN*
Disordered Region (DISEMBL)
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQNN
Disordered Region (DISPRO)
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.950	0.192	0.403	5e-26
C0LGT6	1031	LRR receptor-like serine/	no	no	0.950	0.188	0.374	2e-24
Q9LHP4	1141	Receptor-like protein kin	no	no	0.916	0.163	0.427	3e-23
O49318	1124	Probable leucine-rich rep	no	no	0.936	0.169	0.387	4e-23
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.921	0.150	0.359	6e-22
Q9SD62	1025	Putative receptor-like pr	no	no	0.916	0.182	0.398	1e-21
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.916	0.149	0.350	2e-21
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.955	0.176	0.370	2e-21
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.950	0.197	0.373	5e-21
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.916	0.154	0.387	4e-20

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           +L+ + L +N L GEIP ++A L  + +L L  NN  GV    ++N+S+LK++ +  N  
Sbjct: 187 LLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHF 246

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            G L   +G+ LP +   N+  N F+G+IP++++N S L  L +  N  +G IP T GN+
Sbjct: 247 SGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNV 305

Query: 121 RNLEWLGLAYNNLTSSTSK-LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            NL+ L L  N+L S +S+ L FL+SL NC +L +L +  N L G LP SI NLS  L T
Sbjct: 306 PNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVT 365

Query: 180 LLITNCSISGNIPQAI 195
           L +    ISG+IP  I
Sbjct: 366 LDLGGTLISGSIPYDI 381

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 112/195 (57%), Gaps = 1/195 (0%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ +   YN++ GEIP E+A L  +    + +N+  G     ++N+S+L+ + L +NS  
Sbjct: 195 LQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFS 254

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G+L +  G  LP +  L L  N+F+G IP ++ N S L    +  N  SG IP + G LR
Sbjct: 255 GNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLR 314

Query: 122 NLEWLGL-AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
           NL WLG+   +   +S+S L F+ ++ANC +L  L++  N L G LP+SI NLS +L +L
Sbjct: 315 NLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSL 374

Query: 181 LITNCSISGNIPQAI 195
            +    ISG IP  I
Sbjct: 375 FLGQNLISGTIPHDI 389

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 109/194 (56%), Gaps = 7/194 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  ++L  N L G IP EI  L  LE L L  N+LVG +   I N S LK+I L  N L 
Sbjct: 276 LVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLS 335

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           GS+PS IG  L  +E   +  N+FSG+IP++I+N S L  L+L  N  SGLIP  +G L 
Sbjct: 336 GSIPSSIG-RLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLT 394

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L  L  A++N        S    LA+C  L++L+L  N L G +PS +  L    + LL
Sbjct: 395 KLT-LFFAWSNQLEG----SIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLL 449

Query: 182 ITNCSISGNIPQAI 195
           I+N S+SG IPQ I
Sbjct: 450 ISN-SLSGFIPQEI 462

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 7   LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
           L YN L G+IP EI N   LE + L  N   G +   I  +S L+   + NN L G LP 
Sbjct: 116 LAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPE 175

Query: 67  RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
            IG  L  +E L    N  +G +P S+ N +KLT  + G N FSG IP  IG   NL+ L
Sbjct: 176 EIG-DLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLL 234

Query: 127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186
           GLA N ++    K      +    KL+ + L  N   GF+P  IGNL+ SLETL +   S
Sbjct: 235 GLAQNFISGELPK-----EIGMLVKLQEVILWQNKFSGFIPKDIGNLT-SLETLALYGNS 288

Query: 187 ISGNIPQAISTK------YLFQNN 204
           + G IP  I         YL+QN 
Sbjct: 289 LVGPIPSEIGNMKSLKKLYLYQNQ 312

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 29/217 (13%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK ++L   +L GEIP EI+N ++L+ L L  N L G +   +F +  L  + L NNSL 
Sbjct: 339 LKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLE 398

Query: 62  GSLPSRIG----LSLPTVEHLNLE-------------------LNRFSGTIPSSITNASK 98
           G+L S I     L   T+ H NLE                    NRFSG +P  I N ++
Sbjct: 399 GTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTR 458

Query: 99  LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLI 158
           L  +   GN  SG IP +IG L++L  L L  N L  +       +SL NC ++  ++L 
Sbjct: 459 LQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP-----ASLGNCHQMTVIDLA 513

Query: 159 GNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
            N L G +PSS G L+ +LE  +I N S+ GN+P ++
Sbjct: 514 DNQLSGSIPSSFGFLT-ALELFMIYNNSLQGNLPDSL 549

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 109/188 (57%), Gaps = 1/188 (0%)

Query: 9   YNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI 68
           YN++ GEIP +IA L+ +    + +N   GV   PI+N+S+L  + +  NS  G+L    
Sbjct: 210 YNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDF 269

Query: 69  GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128
           G  LP ++ L + +N F+GTIP +++N S L  L +  N  +G IP + G L+NL  LGL
Sbjct: 270 GSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGL 329

Query: 129 AYNNLTS-STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI 187
             N+L + S+  L FL +L NC +L+ LN+  N L G LP  I NLS  L  L +    I
Sbjct: 330 NNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLI 389

Query: 188 SGNIPQAI 195
           SG+IP  I
Sbjct: 390 SGSIPHGI 397

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 111/194 (57%), Gaps = 7/194 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ ++L  N+L GEIP ++ +L N+ +L +G N LVG +   + N+  L+++ L +  L 
Sbjct: 121 LESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLT 180

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G +PS++G  L  V+ L L+ N   G IP+ + N S LT+     N  +G IP  +G L 
Sbjct: 181 GPIPSQLG-RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLE 239

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           NLE L LA N+LT         S L    +L+ L+L+ N L G +P S+ +L  +L+TL 
Sbjct: 240 NLEILNLANNSLTGEIP-----SQLGEMSQLQYLSLMANQLQGLIPKSLADLG-NLQTLD 293

Query: 182 ITNCSISGNIPQAI 195
           ++  +++G IP+  
Sbjct: 294 LSANNLTGEIPEEF 307

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK + L YN L G+IP EI N  +LE L L  N   G +   I  + +L+ +I+ NN + 
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRIS 158

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           GSLP  IG +L ++  L    N  SG +P SI N  +LT  + G N  SG +P  IG   
Sbjct: 159 GSLPVEIG-NLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCE 217

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           +L  LGLA N L+    K      +   KKL  + L  N   GF+P  I N + SLETL 
Sbjct: 218 SLVMLGLAQNQLSGELPK-----EIGMLKKLSQVILWENEFSGFIPREISNCT-SLETLA 271

Query: 182 ITNCSISGNIP------QAISTKYLFQN 203
           +    + G IP      Q++   YL++N
Sbjct: 272 LYKNQLVGPIPKELGDLQSLEFLYLYRN 299

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 7/201 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF---NMSTLKIIILINN 58
           LK + L  N LHG IP E+  L  L  L LG N L G +   +F   + S+L+ I L NN
Sbjct: 117 LKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNN 176

Query: 59  SLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTI 117
           SL G +P      L  +  L L  N+ +GT+PSS++N++ L  + L  N  SG +P   I
Sbjct: 177 SLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVI 236

Query: 118 GNLRNLEWLGLAYNNLTS---STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS 174
             +  L++L L+YN+  S   +T+   F +SLAN   L+ L L GN L G + SS+ +LS
Sbjct: 237 SKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLS 296

Query: 175 MSLETLLITNCSISGNIPQAI 195
           ++L  + +    I G+IP  I
Sbjct: 297 VNLVQIHLDQNRIHGSIPPEI 317

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/196 (38%), Positives = 110/196 (56%), Gaps = 9/196 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFN--MSTLKIIILINNS 59
           +K + L +NK  G +P   +NL  LE L +  NNL GV+ + I    M+ LK++ L NN 
Sbjct: 379 IKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNL 438

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
             G +P  +  +   +  L+L  N  +G+IPSS+ + SKL  L L  N  SG IP  +  
Sbjct: 439 FKGPIPDSLS-NCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMY 497

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L+ LE L L +N+LT         +SL+NC KL  ++L  N L G +P+S+G LS +L  
Sbjct: 498 LQALENLILDFNDLTGPIP-----ASLSNCTKLNWISLSNNQLSGEIPASLGRLS-NLAI 551

Query: 180 LLITNCSISGNIPQAI 195
           L + N SISGNIP  +
Sbjct: 552 LKLGNNSISGNIPAEL 567

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.955	0.137	0.482	6e-41
255572272	1089	serine-threonine protein kinase, plant-t	0.950	0.178	0.489	4e-40
147843440	868	hypothetical protein VITISV_043680 [Viti	0.955	0.224	0.487	1e-39
359485453	1202	PREDICTED: probable LRR receptor-like se	0.955	0.162	0.482	5e-39
302143442	999	unnamed protein product [Vitis vinifera]	0.955	0.195	0.477	1e-38
359485176	1160	PREDICTED: probable LRR receptor-like se	0.950	0.167	0.484	2e-38
255583727	395	serine-threonine protein kinase, plant-t	0.901	0.465	0.505	3e-38
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.950	0.133	0.474	4e-38
359483681	871	PREDICTED: LRR receptor-like serine/thre	0.950	0.222	0.494	2e-37
359483683	1228	PREDICTED: LRR receptor-like serine/thre	0.950	0.157	0.489	2e-37

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 128/197 (64%), Gaps = 2/197 (1%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           +L+ + L  N + G IP+E+ NL NL+ L L +NNL G++   IFN+S L+ + L  N  
Sbjct: 409 VLQDLELXENNIQGNIPNELGNLINLQNLKLSVNNLTGIIPEAIFNISKLQTLXLAQNHF 468

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            GSLPS IG  LP +E L +  N FSG IP SI+N S+LT+L +  N F+G +P  +GNL
Sbjct: 469 SGSLPSSIGTQLPDLEGLAIGXNEFSGIIPMSISNMSELTVLDIWANFFTGDVPKDLGNL 528

Query: 121 RNLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE 178
           R LE+L L +N LT   STS++ FL+SL NCK LR L +  NPL G LP+S+GNLS+SLE
Sbjct: 529 RRLEFLNLGFNQLTDEHSTSEVGFLTSLTNCKFLRRLWIEDNPLKGILPNSLGNLSISLE 588

Query: 179 TLLITNCSISGNIPQAI 195
           +   + C   G IP  I
Sbjct: 589 SFDASACQFKGTIPTGI 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 138/196 (70%), Gaps = 2/196 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK + LG N L G IP EI NL+NL+ + L  NNL G +   +FN+ST+K I + +N+L 
Sbjct: 290 LKWLSLGRNNLTGRIPLEIGNLQNLQIVHLSFNNLNGSIPHALFNISTMKWIAMTSNNLL 349

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G+LP+ +GL LP +  L L +N+ SG IPS I+NASKLT+L+L  N+F+G IPD++G+LR
Sbjct: 350 GNLPTSLGLHLPNLIWLYLGINKLSGPIPSYISNASKLTILELPSNSFTGFIPDSLGDLR 409

Query: 122 NLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           NL+ L L  N L+S  ++ +L+  SSL NC+ L+ L L  NPLDG+LP S+GNLS SLE+
Sbjct: 410 NLQTLKLGANLLSSKKTSQELTIFSSLKNCQNLKYLWLSYNPLDGYLPHSVGNLSNSLES 469

Query: 180 LLITNCSISGNIPQAI 195
            L ++  I G++ ++I
Sbjct: 470 FLASDGLIKGSVHESI 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843440|emb|CAN79970.1| hypothetical protein VITISV_043680 [Vitis vinifera]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 134/197 (68%), Gaps = 2/197 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + LG N + G IP E+ +L NL+ L LG +NL G+V   IFN+S L  + L+ N L 
Sbjct: 96  LQDLQLGENNIQGNIPKELGSLINLKFLNLGPSNLTGIVPEAIFNISKLPSLSLVLNHLS 155

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           GSLPS IG  LP +E L +  N+FSG IP SI N SKLT+L +  N F+G +P  +GNLR
Sbjct: 156 GSLPSSIGTWLPDLEGLYIGGNQFSGIIPLSILNMSKLTVLDISVNFFTGYVPKDLGNLR 215

Query: 122 NLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            L++L L+ N L++  S S+L+FL+SL NC  LR+L + GNPL G +P+S+GNLS+SLE+
Sbjct: 216 RLQYLSLSRNQLSNEHSDSELAFLTSLTNCNSLRNLWISGNPLKGIIPNSLGNLSISLES 275

Query: 180 LLITNCSISGNIPQAIS 196
           ++ + C + G IP  IS
Sbjct: 276 IVASGCQLRGTIPTGIS 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 130/197 (65%), Gaps = 2/197 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ IY   +   G IP E+ NL NL+ L+L +NNL G+V   IFN+S L+++ L  N L 
Sbjct: 409 LEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGIVPEAIFNISKLQVLSLAGNHLS 468

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           GSLPS IG  LP +E L +  N FSG IP SI+N S L  L +  N F G +P  +GNLR
Sbjct: 469 GSLPSSIGSWLPNLEQLLIGGNEFSGIIPMSISNMSNLISLDISDNFFIGNVPKDLGNLR 528

Query: 122 NLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            L+ LGL++N LT+  S S+L+FL+SL NC  LR+L++  NPL G +P+S+GNLS+SLE 
Sbjct: 529 QLQLLGLSHNQLTNEHSASELAFLTSLTNCIFLRTLSISDNPLKGMIPNSLGNLSISLEI 588

Query: 180 LLITNCSISGNIPQAIS 196
           +  ++C + G IP  IS
Sbjct: 589 IYASDCQLRGTIPTGIS 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143442|emb|CBI22003.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 131/201 (65%), Gaps = 6/201 (2%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+G+YLGYNKL G IP E+ NLRNL  L+L  + L G +   IFN+S+L+ I L NNS  
Sbjct: 336 LEGLYLGYNKLAGGIPKEMGNLRNLNILSLTSSGLSGPIPTEIFNISSLQEIHLSNNSFS 395

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           GSLP  I   LP ++ L L +N+ SG+ P  I N SKL  + LG N+F+G IP + GNL 
Sbjct: 396 GSLPMDICEHLPNLKGLYLAINQLSGSTPREIGNLSKLEQIYLGRNSFTGTIPPSFGNLT 455

Query: 122 NLEWLGLAYNNLTSS------TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM 175
            L+ L L  NN+  +       S+L+FL+SL NC  LR+L + GNPL G +P+S+GNLS+
Sbjct: 456 ALQDLQLGENNIQGNIPKELGNSELAFLTSLTNCNSLRNLWISGNPLKGIIPNSLGNLSI 515

Query: 176 SLETLLITNCSISGNIPQAIS 196
           SLE+++ + C + G IP  IS
Sbjct: 516 SLESIVASGCQLRGTIPTGIS 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 129/196 (65%), Gaps = 2/196 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK +YL  NK+ G IP E+ +L  L+ L+L  N L G V   IFN+S L+ I+L +N L 
Sbjct: 392 LKTLYLEKNKIQGNIPKELGHLSELQYLSLASNILTGSVPEAIFNISNLQFIVLADNHLS 451

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G+LPS IG SLP +E L +  N  SG IP+SI+N +KLT L L  N  +G +P  +GNLR
Sbjct: 452 GNLPSSIGTSLPQLEELLIGGNYLSGIIPASISNITKLTRLDLSYNLLTGFVPKDLGNLR 511

Query: 122 NLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           +L+ LG   N L+   STS+L FL+SL+NCK LR+L +  NPL G LP+S+GNLS+SL++
Sbjct: 512 SLQHLGFGNNQLSGEYSTSELGFLTSLSNCKFLRNLWIQDNPLKGTLPNSLGNLSLSLQS 571

Query: 180 LLITNCSISGNIPQAI 195
           +  + C   G IP  I
Sbjct: 572 INASACQFKGVIPAGI 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583727|ref|XP_002532617.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527673|gb|EEF29783.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 123/186 (66%), Gaps = 2/186 (1%)

Query: 12  LHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLS 71
           + G IP+EI NL NLE + LG NNL G+V + I+N S + +IIL  N L G LPS +GL 
Sbjct: 1   MTGTIPNEIGNLANLEVIDLGANNLTGLVPSGIYNASKMMVIILAINQLSGRLPSSLGLH 60

Query: 72  LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN 131
           LP +E L +  N F+G IP S+ NAS+L ++ +G N+F G IPD +GNLR LE      N
Sbjct: 61  LPNLEDLLVVDNNFTGPIPVSLFNASELRIIDMGLNSFFGPIPDELGNLRGLEVFSFWVN 120

Query: 132 NLT--SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISG 189
           +LT  SS+S L+  SSL  CK LR  +L  NPL+G LP S+GNLS SLE + I +C I+G
Sbjct: 121 HLTIKSSSSGLTLFSSLTKCKHLRRFDLSNNPLNGNLPISVGNLSSSLEVVEIFDCGITG 180

Query: 190 NIPQAI 195
            IP+ I
Sbjct: 181 TIPKEI 186

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 124/196 (63%), Gaps = 2/196 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + LG N + G IP+E+ NL NL+ L L  NNL G++   IFN+S L+ + L  N   
Sbjct: 664 LQDLELGDNNIQGNIPNELGNLINLQNLKLSENNLTGIIPEAIFNISKLQSLSLAQNHFS 723

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           GSLPS +G  LP +E L +  N FSG IP SI+N S+LT L +  N F+G +P  +GNLR
Sbjct: 724 GSLPSSLGTQLPDLEGLAIGRNEFSGIIPMSISNMSELTELDIWDNFFTGDVPKDLGNLR 783

Query: 122 NLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            LE+L L  N LT   S S++ FL+SL NC  LR+L +  NPL G LP+S+GNLS+SLE+
Sbjct: 784 RLEFLNLGSNQLTDEHSASEVGFLTSLTNCNFLRTLWIEDNPLKGILPNSLGNLSISLES 843

Query: 180 LLITNCSISGNIPQAI 195
              + C   G IP  I
Sbjct: 844 FDASACQFRGTIPTGI 859

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483681|ref|XP_002268458.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/196 (49%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ IYL  N L G IP    NL+ L+ L LG NNL G +   IFN+S L+ + L  N L 
Sbjct: 269 LEKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQTLALAQNHLS 328

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G LPS IG  LP +E L +  N FSGTIP SI+N SKL  L +  N F+G +P  + NLR
Sbjct: 329 GGLPSSIGTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTGNMPKDLSNLR 388

Query: 122 NLEWLGLAYNNLTSS--TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            LE L LA N LT    TSK+ FL+SL NCK LR+L +  NPL G LP+S+GNLS++LE+
Sbjct: 389 KLEVLNLAGNQLTDEHLTSKVGFLTSLTNCKFLRTLWIDYNPLRGTLPNSLGNLSVALES 448

Query: 180 LLITNCSISGNIPQAI 195
              + C   G IP  I
Sbjct: 449 FTASACHFRGTIPTGI 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ IYL  N L G IP    NL+ L+ L LG NNL G +   IFN+S L+ + L  N L 
Sbjct: 438 LEKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQTLALAQNHLS 497

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G LPS IG  LP +E L +  N FSGTIP SI+N SKL  L +  N F+G +P  + NLR
Sbjct: 498 GGLPSSIGTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTGNVPKDLSNLR 557

Query: 122 NLEWLGLAYNNLTSS--TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            LE L LA N LT    TS++ FL+SL NCK LR+L +  NPL G LP+S+GNLS++LE+
Sbjct: 558 KLEVLNLAGNQLTDEHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLPNSLGNLSVALES 617

Query: 180 LLITNCSISGNIPQAI 195
              + C   G IP  I
Sbjct: 618 FTASACHFRGTIPTGI 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.950	0.238	0.379	6.8e-29
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.926	0.184	0.389	5.5e-27
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.950	0.188	0.358	6.5e-26
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.921	0.199	0.4	4e-25
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.926	0.187	0.368	9.5e-25
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.916	0.163	0.417	1.9e-24
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.916	0.182	0.367	2.6e-24
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.931	0.169	0.394	8e-24
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.950	0.192	0.362	8.7e-24
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.960	0.156	0.382	1.2e-23

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 331 (121.6 bits), Expect = 6.8e-29, P = 6.8e-29
 Identities = 74/195 (37%), Positives = 110/195 (56%)

Query:     2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
             L  + L  N L G IP     LR L  L+L  NNL G +  PI+N+S+L I  +I+N L 
Sbjct:   176 LTDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLS 235

Query:    62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             G+LP+    +LP+++ + +  N+F G IP+SI NAS +++  +G N+FSG++P  IG +R
Sbjct:   236 GTLPTNAFSNLPSLQEVYMYYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMR 295

Query:   122 NLEWLGLAYN-NXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
             NL+ L L    +               NC  L+ + L G    G LP S+ NLS SL +L
Sbjct:   296 NLQRLELPETLSEAEETNDWKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSL 355

Query:   181 LITNCSISGNIPQAI 195
              I +  ISG++P+ I
Sbjct:   356 SIRDNKISGSLPRDI 370

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 315 (115.9 bits), Expect = 5.5e-27, P = 5.5e-27
 Identities = 74/190 (38%), Positives = 107/190 (56%)

Query:     7 LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
             L +N+L G IP  +  L +L  + LG NNL G++   I+N+S+L+   +  N L G +P+
Sbjct:   207 LSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPT 266

Query:    67 RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
                 +L  +E +++  NRF G IP+S+ NAS LT++++ GN FSG+I    G LRNL  L
Sbjct:   267 NAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTEL 326

Query:   127 GLAYNNXXXXXXXX-XXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185
              L  N                 NC KL++LNL  N L G LP+S  NLS SL  L +   
Sbjct:   327 YLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELN 386

Query:   186 SISGNIPQAI 195
              I+G+IP+ I
Sbjct:   387 KITGSIPKDI 396

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 6.5e-26, P = 6.5e-26
 Identities = 70/195 (35%), Positives = 104/195 (53%)

Query:     2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
             L+ +   YN++ GEIP E+A L  +    + +N+  G     ++N+S+L+ + L +NS  
Sbjct:   195 LQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFS 254

Query:    62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             G+L +  G  LP +  L L  N+F+G IP ++ N S L    +  N  SG IP + G LR
Sbjct:   255 GNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLR 314

Query:   122 NLEWLGLAYNNXXXXXXXXXXXXXX-ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
             NL WLG+  N+               ANC +L  L++  N L G LP+SI NLS +L +L
Sbjct:   315 NLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSL 374

Query:   181 LITNCSISGNIPQAI 195
              +    ISG IP  I
Sbjct:   375 FLGQNLISGTIPHDI 389

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 4.0e-25, P = 4.0e-25
 Identities = 78/195 (40%), Positives = 105/195 (53%)

Query:     2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
             L+ + L  N L GEIP  I NL +L +L L  N  +G++ + I N+S L  + L +N   
Sbjct:   127 LRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFS 186

Query:    62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             G +PS IG +L  +  L L  N+FSG IPSSI N S LT L L  N F G IP +IGNL 
Sbjct:   187 GQIPSSIG-NLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNLA 245

Query:   122 NLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
              L +L L+YNN               N  +L  L +  N L G +P S+ NL+  L  LL
Sbjct:   246 RLTYLYLSYNNFVGEIPSSF-----GNLNQLIVLQVDSNKLSGNVPISLLNLTR-LSALL 299

Query:   182 ITNCSISGNIPQAIS 196
             +++   +G IP  IS
Sbjct:   300 LSHNQFTGTIPNNIS 314

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 9.5e-25, P = 9.5e-25
 Identities = 70/190 (36%), Positives = 97/190 (51%)

Query:     7 LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
             LGYN L GEIP +IA L  + +L L MNN  GV     +N+S+L+ + L+ N   G+L  
Sbjct:   193 LGYNHLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKP 252

Query:    67 RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
               G  LP +  L+L  N  +G IP+++ N S L +  +G N  +G I    G L NL +L
Sbjct:   253 DFGNLLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYL 312

Query:   127 GLAYNNXXXXXXXXXXXXXX-ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185
              LA N+                NC  L  L++  N L G LP+SI N+S  L  L +   
Sbjct:   313 ELANNSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGN 372

Query:   186 SISGNIPQAI 195
              I G+IP  I
Sbjct:   373 LIYGSIPHDI 382

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 81/194 (41%), Positives = 107/194 (55%)

Query:     2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
             L  ++L  N L G IP EI  L  LE L L  N+LVG +   I N S LK+I L  N L 
Sbjct:   276 LVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLS 335

Query:    62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             GS+PS IG  L  +E   +  N+FSG+IP++I+N S L  L+L  N  SGLIP  +G L 
Sbjct:   336 GSIPSSIG-RLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLT 394

Query:   122 NLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
              L  L  A++N              A+C  L++L+L  N L G +PS +  L    + LL
Sbjct:   395 KLT-LFFAWSNQLEGSIPPGL----ADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLL 449

Query:   182 ITNCSISGNIPQAI 195
             I+N S+SG IPQ I
Sbjct:   450 ISN-SLSGFIPQEI 462

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 69/188 (36%), Positives = 100/188 (53%)

Query:     9 YNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI 68
             YN++ GEIP +IA L+ +    + +N   GV   PI+N+S+L  + +  NS  G+L    
Sbjct:   210 YNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDF 269

Query:    69 GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128
             G  LP ++ L + +N F+GTIP +++N S L  L +  N  +G IP + G L+NL  LGL
Sbjct:   270 GSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGL 329

Query:   129 AYNNXXXXXXXXXXXXXX-ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI 187
               N+                NC +L+ LN+  N L G LP  I NLS  L  L +    I
Sbjct:   330 NNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLI 389

Query:   188 SGNIPQAI 195
             SG+IP  I
Sbjct:   390 SGSIPHGI 397

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 8.0e-24, P = 8.0e-24
 Identities = 80/203 (39%), Positives = 100/203 (49%)

Query:     7 LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
             L YN L G+IP EI N   LE + L  N   G +   I  +S L+   + NN L G LP 
Sbjct:   116 LAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKLSGPLPE 175

Query:    67 RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
              IG  L  +E L    N  +G +P S+ N +KLT  + G N FSG IP  IG   NL+ L
Sbjct:   176 EIG-DLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLL 234

Query:   127 GLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186
             GLA N                   KL+ + L  N   GF+P  IGNL+ SLETL +   S
Sbjct:   235 GLAQN-----FISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLT-SLETLALYGNS 288

Query:   187 ISGNIPQAI----STK--YLFQN 203
             + G IP  I    S K  YL+QN
Sbjct:   289 LVGPIPSEIGNMKSLKKLYLYQN 311

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 71/196 (36%), Positives = 106/196 (54%)

Query:     1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
             +L+ + L +N L GEIP ++A L  + +L L  NN  GV    ++N+S+LK++ +  N  
Sbjct:   187 LLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHF 246

Query:    61 FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              G L   +G+ LP +   N+  N F+G+IP++++N S L  L +  N  +G IP T GN+
Sbjct:   247 SGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNV 305

Query:   121 RNLEWLGLAYNNXXXXXXXXXXXXXX-ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
              NL+ L L  N+                NC +L +L +  N L G LP SI NLS  L T
Sbjct:   306 PNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVT 365

Query:   180 LLITNCSISGNIPQAI 195
             L +    ISG+IP  I
Sbjct:   366 LDLGGTLISGSIPYDI 381

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 78/204 (38%), Positives = 106/204 (51%)

Query:     2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
             LK + L  N L G IP  +  L  L  L L  N L G +S  I N++ L+ ++L +N+L 
Sbjct:   362 LKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLE 421

Query:    62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             G LP  I  +L  +E L L  NRFSG IP  I N + L ++ + GN F G IP +IG L+
Sbjct:   422 GKLPKEIS-ALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLK 480

Query:   122 NLEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
              L  L L  N                NC +L  L+L  N L G +PSS G L   LE L+
Sbjct:   481 ELNLLHLRQNELVGGLPASL-----GNCHQLNILDLADNQLSGSIPSSFGFLK-GLEQLM 534

Query:   182 ITNCSISGNIPQA-ISTKYLFQNN 204
             + N S+ GN+P + IS + L + N
Sbjct:   535 LYNNSLQGNLPDSLISLRNLTRIN 558

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025217001 SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (2202 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 4e-21
 Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK IYLGYN L GEIP+EI  L +L  L L  NNL G + + + N+  L+ + L  N L 
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G +P  I  SL  +  L+L  N  SG IP  +     L +L L  N F+G IP  + +L 
Sbjct: 274 GPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP 332

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L+ L L  N  +    K     +L     L  L+L  N L G +P  + + S +L  L+
Sbjct: 333 RLQVLQLWSNKFSGEIPK-----NLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLI 386

Query: 182 ITNCSISGNIPQAIST 197
           + + S+ G IP+++  
Sbjct: 387 LFSNSLEGEIPKSLGA 402

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 2e-19
 Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 8/191 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L  N   GE+P E   L  +  L +  NNL G +++  ++M +L+++ L  N  F
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G LP   G     +E+L+L  N+FSG +P  + + S+L  LKL  N  SG IPD + + +
Sbjct: 466 GGLPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L  L L++N L+         +S +    L  L+L  N L G +P ++GN+  SL  + 
Sbjct: 524 KLVSLDLSHNQLSGQIP-----ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE-SLVQVN 577

Query: 182 ITNCSISGNIP 192
           I++  + G++P
Sbjct: 578 ISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 84.5 bits (209), Expect = 4e-19
 Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 34/219 (15%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMS-TLKIIILINNSL 60
           +  I L    + G+I   I  L  ++ + L  N L G +   IF  S +L+ + L NN+ 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            GS+P     S+P +E L+L  N  SG IP+ I + S L +L LGGN   G IP+++ NL
Sbjct: 131 TGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187

Query: 121 ------------------------RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLN 156
                                   ++L+W+ L YNNL+           +     L  L+
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-----EIGGLTSLNHLD 242

Query: 157 LIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
           L+ N L G +PSS+GNL  +L+ L +    +SG IP +I
Sbjct: 243 LVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSI 280

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 9e-16
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 8/174 (4%)

Query: 22  NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81
           N   + ++ L   N+ G +S+ IF +  ++ I L NN L G +P  I  +  ++ +LNL 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 82  LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS 141
            N F+G+IP    +   L  L L  N  SG IP+ IG+  +L+ L L  N L        
Sbjct: 127 NNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP--- 181

Query: 142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
             +SL N   L  L L  N L G +P  +G +  SL+ + +   ++SG IP  I
Sbjct: 182 --NSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNLSGEIPYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 30/209 (14%)

Query: 7   LGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS 66
           L  N L GEIP  + +  NL  L L  N+L G +   +    +L+ + L +NS  G LPS
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 67  RI-----------------------GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLK 103
                                       +P+++ L+L  N+F G +P S   + +L  L 
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLD 481

Query: 104 LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           L  N FSG +P  +G+L  L  L L+ N L+           L++CKKL SL+L  N L 
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-----DELSSCKKLVSLDLSHNQLS 536

Query: 164 GFLPSSIGNLSMSLETLLITNCSISGNIP 192
           G +P+S   + + L  L ++   +SG IP
Sbjct: 537 GQIPASFSEMPV-LSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 22/207 (10%)

Query: 10  NKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG 69
           N L GEIP  +  L+NLE L L  NN  G +   + ++  L+++ L +N   G +P  +G
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 70  LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA 129
                +  L+L  N  +G IP  + ++  L  L L  N+  G IP ++G  R+L  + L 
Sbjct: 354 -KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 130 YNNLTSSTSK-------LSFLSSLAN------------CKKLRSLNLIGNPLDGFLPSSI 170
            N+ +            + FL    N               L+ L+L  N   G LP S 
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472

Query: 171 GNLSMSLETLLITNCSISGNIPQAIST 197
           G  S  LE L ++    SG +P+ + +
Sbjct: 473 G--SKRLENLDLSRNQFSGAVPRKLGS 497

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134
           ++ L L+     G IP+ I+    L  + L GN+  G IP ++G++ +LE L L+YN+  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITN----CSISG 189
            S  +     SL     LR LNL GN L G +P+++G   +   +   T+    C I G
Sbjct: 480 GSIPE-----SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 29/90 (32%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 4   GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGS 63
           G+ L    L G IP++I+ LR+L+++ L  N++ G +   + ++++L+++ L  NS  GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 64  LPSRIGLSLPTVEHLNLELNRFSGTIPSSI 93
           +P  +G  L ++  LNL  N  SG +P+++
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 30  ALGMNN--LVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSG 87
            LG++N  L G +   I  +  L+ I L  NS+ G++P  +G S+ ++E L+L  N F+G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNG 480

Query: 88  TIPSSITNASKLTLLKLGGNTFSGLIPDTIG 118
           +IP S+   + L +L L GN+ SG +P  +G
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ I L  N + G IP  + ++ +LE L L  N+  G +   +  +++L+I+ L  NSL 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 62  GSLPSRIG 69
           G +P+ +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L  N+  G +P ++ +L  L  L L  N L G +   + +   L  + L +N L 
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDT 116
           G +P+     +P +  L+L  N+ SG IP ++ N   L  + +  N   G +P T
Sbjct: 537 GQIPASFS-EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 94  TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR 153
            N+S++  + L G   SG I   I  L  ++ + L+ N L+       F +       LR
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT----SSSLR 121

Query: 154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
            LNL  N   G +P   G++   LETL ++N  +SG IP  I
Sbjct: 122 YLNLSNNNFTGSIPR--GSIPN-LETLDLSNNMLSGEIPNDI 160

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 98  KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157
            L  L L  N  + +       L NL+ L L+ NNLTS + +     + +    LRSL+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE-----AFSGLPSLRSLDL 55

Query: 158 IGNPL 162
            GN L
Sbjct: 56  SGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.49
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
PLN03150	623	hypothetical protein; Provisional	99.19
PLN03150	623	hypothetical protein; Provisional	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.93
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.65
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.48
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.69
KOG4341	483	consensus F-box protein containing LRR [General fu	96.5
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.2
KOG4341	483	consensus F-box protein containing LRR [General fu	95.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.76
KOG4308	478	consensus LRR-containing protein [Function unknown	94.66
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.81
smart00370	26	LRR Leucine-rich repeats, outliers.	93.81
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	92.48
KOG4308	478	consensus LRR-containing protein [Function unknown	90.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.63
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.23
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.94
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.23

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=3.7e-25  Score=187.86  Aligned_cols=193  Identities=34%  Similarity=0.564  Sum_probs=126.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++.
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~  220 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLG  220 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECc
Confidence            56666666666666677777777777777777777766676677777777777777777666666665 67777777777


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+....|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+....+     ..+..+++|++|++++|.
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----PSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----hhHhhccCcCEEECcCCe
Confidence            777766666667777777777777777766666667777777777777766643311     344555556666666666


Q ss_pred             CCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      +.+.+|..+..++ +|+.|++++|.+++..|..++.++.|
T Consensus       296 l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L  334 (968)
T PLN00113        296 LSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRL  334 (968)
T ss_pred             eccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCC
Confidence            5555555555555 55555555555555555555555444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.6e-24  Score=183.95  Aligned_cols=199  Identities=35%  Similarity=0.527  Sum_probs=120.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus       165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L  243 (968)
T PLN00113        165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDL  243 (968)
T ss_pred             CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEEC
Confidence            366777777777666777777777777777777777666666666677777777777766655665554 5666666666


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc-------------------h
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-------------------S  141 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------------~  141 (204)
                      .+|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..                   .
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~  323 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK  323 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence            666665555555666666666666666655555555555555666665555544321100                   0


Q ss_pred             hhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      .+..+..+++|+.|++++|.+.+.+|..+..+. +|+.|++++|.+++.+|+.++.++.+
T Consensus       324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L  382 (968)
T PLN00113        324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNL  382 (968)
T ss_pred             CChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCC
Confidence            113344455555555555555555555555555 56666666666666666665554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=5.7e-22  Score=152.43  Aligned_cols=191  Identities=24%  Similarity=0.257  Sum_probs=93.4

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      +.|+|+.|.++..-.+.|..-.++++|++++|.|+....+.|..+.+|.+|.++.|.++ .+|...|..+++|+.|++..
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccc
Confidence            34444444444222223333344444444444444444444444444444444444443 34443333344444444444


Q ss_pred             Cc------------------------CccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496           83 NR------------------------FSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS  138 (204)
Q Consensus        83 ~~------------------------~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  138 (204)
                      |.                        +..--.+.|..+.++++|++..|.++.....++..++.|+.|++++|.+..+..
T Consensus       231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~  310 (873)
T KOG4194|consen  231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI  310 (873)
T ss_pred             cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence            43                        332222344555555566665555554444555555666666666666555532


Q ss_pred             cchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496          139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL  200 (204)
Q Consensus       139 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  200 (204)
                           +....+++|++|+++.|.++...+..|..+. .|+.|.+++|.++-....+|..+..
T Consensus       311 -----d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  311 -----DSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             -----chhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhh
Confidence                 4455556666666666666655555555555 5555555555555444444443333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=9.6e-22  Score=151.22  Aligned_cols=136  Identities=23%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeec------------------------C
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILI------------------------N   57 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~------------------------~   57 (204)
                      +++|+|++|+++..-.+.|..+.+|..|.++.|+++...+..|..+++|+.|++.                        .
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence            4555666665554444445555555555555555554444444444444444444                        4


Q ss_pred             CcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCc
Q 047496           58 NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST  137 (204)
Q Consensus        58 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  137 (204)
                      |.+. .+.++.|..+.++++|++..|.++..-.+++.+++.|+.|+++.|.+..+.++.|...++|++|+++.|+++.++
T Consensus       255 N~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  255 NDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             cCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence            4443 455666667888888888888887555666777788888888888877777777777788888888877777665


Q ss_pred             c
Q 047496          138 S  138 (204)
Q Consensus       138 ~  138 (204)
                      +
T Consensus       334 ~  334 (873)
T KOG4194|consen  334 E  334 (873)
T ss_pred             h
Confidence            4

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=6.2e-22  Score=130.81  Aligned_cols=165  Identities=28%  Similarity=0.416  Sum_probs=107.9

Q ss_pred             CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496           22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL  101 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  101 (204)
                      .+.+++.|.+++|+++...| .+..+.+|+.|++++|+++ ++|..+. ++++|+.|+++.|++. ..|.+|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            45666677777777664433 3566677777777777765 6666665 6777777777777666 66777777777777


Q ss_pred             EeccCCcccc-cccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEE
Q 047496          102 LKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL  180 (204)
Q Consensus       102 l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L  180 (204)
                      |++..|++.. ..|..|-.+..|+.|++++|.+...|      ..++.+++|+.|.+.+|.+. .+|..++.++ .|+.|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp------~dvg~lt~lqil~lrdndll-~lpkeig~lt-~lrel  178 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILP------PDVGKLTNLQILSLRDNDLL-SLPKEIGDLT-RLREL  178 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCC------hhhhhhcceeEEeeccCchh-hCcHHHHHHH-HHHHH
Confidence            7777666642 34555656666666777777666555      35666666777777777666 5666666666 66777


Q ss_pred             Eeeccccccccchhhhhhh
Q 047496          181 LITNCSISGNIPQAISTKY  199 (204)
Q Consensus       181 ~l~~n~~~~~~~~~~~~l~  199 (204)
                      .+++|+++ .+|..++.+.
T Consensus       179 hiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             hcccceee-ecChhhhhhh
Confidence            77777666 5555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.78  E-value=9.1e-21  Score=147.48  Aligned_cols=188  Identities=27%  Similarity=0.379  Sum_probs=112.1

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      +.|+|++|++. .+|..+....++-.|++++|+|..+.-..|.++..|-.||+++|.+. .+|+.+. .+..|+.|.+++
T Consensus       106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~R-RL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIR-RLSMLQTLKLSN  182 (1255)
T ss_pred             eeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHH-HHhhhhhhhcCC
Confidence            44555555544 44544444455555555555555443344444555555555555553 4454443 444555555555


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCccc-ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      |.+.----..+..+++|..|++++..-+ ..+|..+..+.+|..++++.|.+...|      +.+-.+++|+.|++++|.
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP------ecly~l~~LrrLNLS~N~  256 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP------ECLYKLRNLRRLNLSGNK  256 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch------HHHhhhhhhheeccCcCc
Confidence            5443111122334444445555443222 235566666777888888888777666      567777888888888888


Q ss_pred             CCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ++ ++.-....+. ++++|+++.|+++ .+|+++|++++|+
T Consensus       257 it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  257 IT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             ee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHH
Confidence            87 5555566666 8888888888887 7888888888764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.77  E-value=6.2e-21  Score=126.12  Aligned_cols=182  Identities=31%  Similarity=0.509  Sum_probs=155.1

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++.|.+++|.+. .+|+.++++.+|+.|++.+|.+.. .|..++.++.|++|++.-|.+. .+|.+++ ++|.|+.||+.
T Consensus        35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levldlt  110 (264)
T KOG0617|consen   35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVLDLT  110 (264)
T ss_pred             hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccC-CCchhhhhhcc
Confidence            467889999988 788889999999999999999984 4666899999999999999886 8899998 89999999999


Q ss_pred             CCcCc-cCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           82 LNRFS-GTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      +|.+. ..+|..|..+..|+.|.+++|.+. ..|..++.+++|+.|.+.+|.+.+.|      ..++.+..|++|++++|
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lp------keig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLP------KEIGDLTRLRELHIQGN  183 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCc------HHHHHHHHHHHHhcccc
Confidence            99886 357889999999999999999998 78899999999999999999998887      67888999999999999


Q ss_pred             cCCCCCCccccccc--cCccEEEeeccccccccchhh
Q 047496          161 PLDGFLPSSIGNLS--MSLETLLITNCSISGNIPQAI  195 (204)
Q Consensus       161 ~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~  195 (204)
                      +++ .+|..++.+.  .+-+.+.+..|.+...+.+.|
T Consensus       184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            998 6777776543  233556677777665555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=1.4e-20  Score=146.54  Aligned_cols=186  Identities=26%  Similarity=0.382  Sum_probs=127.1

Q ss_pred             EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcce-eecCCccCCCCCCccEEEcCCC
Q 047496            5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF-GSLPSRIGLSLPTVEHLNLELN   83 (204)
Q Consensus         5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~   83 (204)
                      |+|++|++. .+|+.+..+.+|++|.+++|++....-..+-.++.|++|.+++++.+ ..+|..+- .+.+|..++++.|
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld-~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD-DLHNLRDVDLSEN  232 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh-hhhhhhhcccccc
Confidence            334444433 34444444444444455444443322222333445555555555433 34566655 6778888888888


Q ss_pred             cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      .+. .+|+.+..+.+|+.|++++|.++ .+....+.+.+|+.|+++.|+++..|      .++..+++|+.|.+.+|+++
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP------~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLP------DAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccch------HHHhhhHHHHHHHhccCccc
Confidence            877 77888888888888888888887 34455677788888888888888777      67888888999988888875


Q ss_pred             -CCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          164 -GFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       164 -~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                       +-+|..++++. +|+.+...+|.+. .+|+.+|+|..|+
T Consensus       305 FeGiPSGIGKL~-~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  305 FEGIPSGIGKLI-QLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             ccCCccchhhhh-hhHHHHhhccccc-cCchhhhhhHHHH
Confidence             24788888888 8888888888886 8899999888775

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=2.2e-20  Score=138.04  Aligned_cols=184  Identities=27%  Similarity=0.369  Sum_probs=118.6

Q ss_pred             eEEccCCccccccChhccCCCCCcEEEccCccccccC----------------------CccccCCCccceeeecCCcce
Q 047496            4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV----------------------SAPIFNMSTLKIIILINNSLF   61 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------~~~~~~l~~L~~L~l~~~~~~   61 (204)
                      .++.++|++. .+|..+..+..+.++++++|.+....                      |+.+..+.++..+++.++.+.
T Consensus        95 ~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen   95 SLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             HhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence            4445555554 55555555555555555555554322                      222333444444444444443


Q ss_pred             eecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccch
Q 047496           62 GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS  141 (204)
Q Consensus        62 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  141 (204)
                       +.|+... .|..|++++...|.++ .+|+.++.+.+|..|++..|.+. ..| .|..+..|.+++++.|++...|.   
T Consensus       174 -~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpa---  245 (565)
T KOG0472|consen  174 -ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPA---  245 (565)
T ss_pred             -hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHH---
Confidence             3444433 3555666666666555 66666666666666666666666 445 46667777777777777766653   


Q ss_pred             hhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                        +..++++++..+|+.+|++. +.|+.++.+. +|++||+++|.|+ ..|.+++++ +|+
T Consensus       246 --e~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~  300 (565)
T KOG0472|consen  246 --EHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLK  300 (565)
T ss_pred             --HHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccCCccc-cCCcccccc-eee
Confidence              34568889999999999999 8899998888 8999999999998 667778877 554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=7.3e-19  Score=129.62  Aligned_cols=192  Identities=23%  Similarity=0.309  Sum_probs=131.8

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecC-CcceeecCCccCCCCCCccEEEcC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILIN-NSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      +.++|.-|+|....+.+|+.+++|+.|++++|.|+.+.|++|.++.++..|.+.+ |+++ .+|++.+..+..++.|.+.
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC
Confidence            5688999999966677899999999999999999999999999999998887777 7776 7777666555554444444


Q ss_pred             ------------------------CCcCccCCCc-cccCCCCCCEEeccCCc----------------------------
Q 047496           82 ------------------------LNRFSGTIPS-SITNASKLTLLKLGGNT----------------------------  108 (204)
Q Consensus        82 ------------------------~~~~~~~~~~-~~~~~~~L~~l~l~~~~----------------------------  108 (204)
                                              +|.+. .+++ .+..+..++.+++.-+.                            
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence                                    44333 1221 33333333333322211                            


Q ss_pred             ---------------------------------cccccc-ccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496          109 ---------------------------------FSGLIP-DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS  154 (204)
Q Consensus       109 ---------------------------------~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  154 (204)
                                                       .....| ..|..+++|+.+++++|.++.+.+     .+|.+..++++
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~-----~aFe~~a~l~e  302 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED-----GAFEGAAELQE  302 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-----hhhcchhhhhh
Confidence                                             000111 134556677777777777777644     56777777777


Q ss_pred             EEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          155 LNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       155 l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |.+..|++...-..+|.++. .|++|++.+|+|+...|.+|..+.+|.
T Consensus       303 L~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEecccccccceee
Confidence            77777777644455666777 899999999999999999998776553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.5e-17  Score=125.10  Aligned_cols=142  Identities=28%  Similarity=0.331  Sum_probs=58.2

Q ss_pred             ccCCCCCcEEEccCccccccCCccccCCC---ccceeeecCCcceee----cCCccCCCC-CCccEEEcCCCcCccC---
Q 047496           20 IANLRNLEALALGMNNLVGVVSAPIFNMS---TLKIIILINNSLFGS----LPSRIGLSL-PTVEHLNLELNRFSGT---   88 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~----~~~~~~~~~-~~L~~L~l~~~~~~~~---   88 (204)
                      +..+++|+.|++++|.+.+..+..+..+.   +|++|++++|.+.+.    +...+. .+ ++|+++++.+|.++..   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHH
Confidence            34445555555555554432222222222   255555555544311    111111 23 4555555555554411   


Q ss_pred             -CCccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           89 -IPSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        89 -~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                       ....+..+.+|++|++++|.+.+.    .+..+...++|+.|++++|.+.+.... .+...+..+++|++|++++|.++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS-ALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH-HHHHHhcccCCCCEEecCCCcCc
Confidence             112233334455555555544421    112233334555555555544322110 11223344455555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.64  E-value=4.7e-15  Score=127.84  Aligned_cols=185  Identities=26%  Similarity=0.302  Sum_probs=105.0

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |+.|++.++.+. .++..+..+++|+.++++++......|. +..+++|+.|++++|.....+|..+. .+++|+.|++.
T Consensus       613 L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~  689 (1153)
T PLN03210        613 LVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMS  689 (1153)
T ss_pred             CcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCC
Confidence            556666666655 4555566677777777776654334443 55667777777777665556666655 66777777777


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhh------------------
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL------------------  143 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------------------  143 (204)
                      +|.....+|..+ .+++|+.|++++|.....+|..   ..+|+.|+++++.+..+|....+.                  
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence            665433455443 5666677776666443333321   245566666666655544321000                  


Q ss_pred             ------hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchh
Q 047496          144 ------SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQA  194 (204)
Q Consensus       144 ------~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  194 (204)
                            ......++|++|++++|.....+|..+..++ +|+.|++++|...+.+|..
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCC
Confidence                  0001124566666666665556666666666 6777777666433344443

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=1.3e-18  Score=128.81  Aligned_cols=185  Identities=26%  Similarity=0.411  Sum_probs=140.9

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++++++.+|.+. ..|++++++..++.++.++|++.. .|.....+.++..++.+.+.+. .++++++ .+..++.++..
T Consensus        70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~  145 (565)
T KOG0472|consen   70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIG-RLLDLEDLDAT  145 (565)
T ss_pred             eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHH-HHhhhhhhhcc
Confidence            578899999887 899999999999999999999984 4666778888888888888876 7777776 56667777766


Q ss_pred             CCcCccCCCccccC-----------------------CCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496           82 LNRFSGTIPSSITN-----------------------ASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS  138 (204)
Q Consensus        82 ~~~~~~~~~~~~~~-----------------------~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  138 (204)
                      +|.++ ..|+++..                       |+.|++++...|-+. ..|..++.+.+|+.|++..|.+...| 
T Consensus       146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-  222 (565)
T KOG0472|consen  146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP-  222 (565)
T ss_pred             ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-
Confidence            66665 44444443                       445555555555554 45666666667777777777666654 


Q ss_pred             cchhhhccccCCCccEEEeeCCcCCCCCCcccc-ccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG-NLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       139 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                            .|.+|..|++++++.|.+. .+|.+.. .+. ++..||+.+|+++ +.|+.+|.+++|.
T Consensus       223 ------ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklk-e~Pde~clLrsL~  278 (565)
T KOG0472|consen  223 ------EFPGCSLLKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLK-EVPDEICLLRSLE  278 (565)
T ss_pred             ------CCCccHHHHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccc-cCchHHHHhhhhh
Confidence                  5888889999999999887 5666666 455 8999999999998 8899999888664

>PLN03210 Resistant to P

Probab=99.61  E-value=1.1e-14  Score=125.59  Aligned_cols=102  Identities=24%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CCCEEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchh-------------hhcc-ccCCCccEEEeeCCcC
Q 047496           98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSF-------------LSSL-ANCKKLRSLNLIGNPL  162 (204)
Q Consensus        98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-------------~~~~-~~~~~L~~l~l~~n~~  162 (204)
                      +|+.|++++|.....+|..++.+++|+.|++++|. +..+|....+             ...+ ...++|++|++++|.+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI  858 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence            45566666665554566667777777777776653 3333321000             0000 0013455555555555


Q ss_pred             CCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          163 DGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      . .+|..+..++ +|+.|++++|.--..+|..+..+++|
T Consensus       859 ~-~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L  895 (1153)
T PLN03210        859 E-EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHL  895 (1153)
T ss_pred             c-cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCC
Confidence            5 4555555555 66666666653222344444444433

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.60  E-value=1.3e-16  Score=120.00  Aligned_cols=193  Identities=23%  Similarity=0.255  Sum_probs=135.4

Q ss_pred             CcceEEccCCccccccChhccCCCC---CcEEEccCccccccC----CccccCC-CccceeeecCCcceeec----CCcc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRN---LEALALGMNNLVGVV----SAPIFNM-STLKIIILINNSLFGSL----PSRI   68 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~~----~~~~   68 (204)
                      +|+.|++++|.+....+..+..+..   |+.|++++|.+.+..    ...+..+ ++|+.|++++|.+++..    +..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            4789999999987656666655555   999999999887422    2234456 89999999999987332    2222


Q ss_pred             CCCCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccc
Q 047496           69 GLSLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKL  140 (204)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~  140 (204)
                       ..+++|++|++.+|.+...    ++..+...++|++|++++|.+.+..    ...+..+++|+.|++++|.+.+.... 
T Consensus       162 -~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~-  239 (319)
T cd00116         162 -RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA-  239 (319)
T ss_pred             -HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH-
Confidence             2567899999999988732    2233455679999999999886443    34566788999999999988753210 


Q ss_pred             hhhhcc-ccCCCccEEEeeCCcCCCC----CCccccccccCccEEEeeccccccccchhhh
Q 047496          141 SFLSSL-ANCKKLRSLNLIGNPLDGF----LPSSIGNLSMSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       141 ~~~~~~-~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      .+...+ ...+.|+++++++|.+++.    +...+...+ +|+++++++|.++......+.
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~-~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-SLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC-CccEEECCCCCCcHHHHHHHH
Confidence            011111 1347899999999998732    233344454 899999999999976444333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=1.8e-14  Score=117.76  Aligned_cols=87  Identities=30%  Similarity=0.259  Sum_probs=57.3

Q ss_pred             CCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCc
Q 047496           98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL  177 (204)
Q Consensus        98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L  177 (204)
                      +|+.|++++|.++. .|..   ..+|+.|++++|.+..+|.      .   ..+|+.|++++|.++ .+|..+..++ +|
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~------l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-~L  447 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPM------L---PSGLLSLSVYRNQLT-RLPESLIHLS-SE  447 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCc------c---hhhhhhhhhccCccc-ccChHHhhcc-CC
Confidence            45555555555542 2321   2456666666666665542      1   235677888888887 6788888887 88


Q ss_pred             cEEEeeccccccccchhhhhhh
Q 047496          178 ETLLITNCSISGNIPQAISTKY  199 (204)
Q Consensus       178 ~~L~l~~n~~~~~~~~~~~~l~  199 (204)
                      +.|++++|++++..+..+.++.
T Consensus       448 ~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        448 TTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             CeEECCCCCCCchHHHHHHHHh
Confidence            9999999999888887775543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.57  E-value=1.9e-14  Score=117.94  Aligned_cols=161  Identities=24%  Similarity=0.391  Sum_probs=80.8

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++.|++++|.+. .+|..+.  .+|++|++++|.++.. |..+  ..+|+.|++++|.+. .+|..+.   .+|+.|+++
T Consensus       201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls  270 (754)
T PRK15370        201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATL--PDTIQEMELSINRIT-ELPERLP---SALQSLDLF  270 (754)
T ss_pred             CcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhh--hccccEEECcCCccC-cCChhHh---CCCCEEECc
Confidence            567777777776 4555443  4677777777766643 3222  124566666666654 4554332   345555555


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCccccccccccc-------------------CCCCCcEEEccCccCCCCcccchh
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG-------------------NLRNLEWLGLAYNNLTSSTSKLSF  142 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-------------------~l~~L~~L~l~~~~~~~~~~~~~~  142 (204)
                      +|.+. .+|..+.  .+|+.|++++|.++. +|..+.                   ..++|+.|++++|.+..+|.    
T Consensus       271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~----  342 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA----  342 (754)
T ss_pred             CCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh----
Confidence            55554 3443332  245555555554442 121110                   11345555555555544432    


Q ss_pred             hhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496          143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                        .+  .++|+.|++++|.++ .+|..+.   ++|+.|++++|.++
T Consensus       343 --~l--~~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt  380 (754)
T PRK15370        343 --SL--PPELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALT  380 (754)
T ss_pred             --hh--cCcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCC
Confidence              11  145666666666655 3443331   25566666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=7.1e-14  Score=114.61  Aligned_cols=173  Identities=25%  Similarity=0.401  Sum_probs=123.7

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      .+.|+++++++. .+|..+.  +.++.|++++|.++.. |..+  ..+|+.|++++|.++ .+|..+.   +.|+.|+++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENL--QGNIKTLYANSNQLT-SIPATLP---DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCccc-cCChhhh---ccccEEECc
Confidence            467889888877 5666554  5799999999999965 3333  258999999999987 7777553   579999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccch----hhh----cc-----cc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS----FLS----SL-----AN  148 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~----~~-----~~  148 (204)
                      +|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|.+..+|..+.    .+.    .+     .-
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l  323 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL  323 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence            99998 6776554  57999999999988 4566443  589999999999887764210    000    00     01


Q ss_pred             CCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhh
Q 047496          149 CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI  195 (204)
Q Consensus       149 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  195 (204)
                      .++|+.|++++|.++ .+|..+.   ++|+.|++++|.++ .+|..+
T Consensus       324 ~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~l  365 (754)
T PRK15370        324 PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETL  365 (754)
T ss_pred             cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhh
Confidence            246777777777776 3554443   37888888888887 455443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.52  E-value=2.7e-16  Score=121.05  Aligned_cols=178  Identities=26%  Similarity=0.405  Sum_probs=148.9

Q ss_pred             eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496            4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN   83 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   83 (204)
                      ..+++.|++. .+|..++.+-.|+.+.+++|.+.. .|..+..+..|.+++++.|+++ .+|..++ .+| |+.|-+++|
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVLIVSNN  153 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeEEEecC
Confidence            3566777766 777777777888888888888774 4666788889999999999997 8888887 565 899999999


Q ss_pred             cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      +++ .+|..++....|..++.+.|.+. ..|..++.+..|+.|.+..|++..+|      +.+..+ .|..||++.|+++
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp------~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP------EELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC------HHHhCC-ceeeeecccCcee
Confidence            998 88888888888999999999988 56788899999999999999998887      455544 4899999999999


Q ss_pred             CCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496          164 GFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK  198 (204)
Q Consensus       164 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  198 (204)
                       .+|..|+.+. .|++|-|++|.++ ..|..+|..
T Consensus       225 -~iPv~fr~m~-~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  225 -YLPVDFRKMR-HLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             -ecchhhhhhh-hheeeeeccCCCC-CChHHHHhc
Confidence             8899999999 9999999999998 567777643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=1.5e-13  Score=112.49  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=28.7

Q ss_pred             CccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          151 KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       151 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +|+.|++++|.++ .+|..    ..+|+.|++++|+++ .+|..++.++.++
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence            4556666666655 34432    225677777777776 6777777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.50  E-value=3.5e-16  Score=126.18  Aligned_cols=36  Identities=36%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCcccc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLV   37 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   37 (204)
                      ++++++++++.+. .+|.+++.+.+|+.+...+|.++
T Consensus       242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV  277 (1081)
T ss_pred             cceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence            3677778877776 56677788888888888887764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.49  E-value=5.4e-16  Score=114.69  Aligned_cols=181  Identities=22%  Similarity=0.260  Sum_probs=138.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCC---------------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINN---------------------   58 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~---------------------   58 (204)
                      +|++|+|++|.|....|++|..+..+..|-+.+ |+|+......|.++..++.|.+..+                     
T Consensus        92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen   92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence            489999999999988899999999988887776 8898877666766655555555444                     


Q ss_pred             ---cceeecCCccCCCCCCccEEEcCCCc------------------------------------Ccc------------
Q 047496           59 ---SLFGSLPSRIGLSLPTVEHLNLELNR------------------------------------FSG------------   87 (204)
Q Consensus        59 ---~~~~~~~~~~~~~~~~L~~L~l~~~~------------------------------------~~~------------   87 (204)
                         .+. .++...++.+..++.+.+..+.                                    +..            
T Consensus       172 yDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es  250 (498)
T KOG4237|consen  172 YDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES  250 (498)
T ss_pred             cchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence               332 3444444455555555444432                                    000            


Q ss_pred             -------------CCC-ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc
Q 047496           88 -------------TIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR  153 (204)
Q Consensus        88 -------------~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~  153 (204)
                                   ..| ..|.++++|+.+++++|.++++-+.+|.....+++|.+..|.+..+..     ..+.++..|+
T Consensus       251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-----~~f~~ls~L~  325 (498)
T KOG4237|consen  251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-----GMFQGLSGLK  325 (498)
T ss_pred             HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-----Hhhhccccce
Confidence                         000 124567899999999999998888899999999999999999987754     5789999999


Q ss_pred             EEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496          154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       154 ~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      .|++.+|+|+...|.+|..+. .|.+|++-.|.+.
T Consensus       326 tL~L~~N~it~~~~~aF~~~~-~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  326 TLSLYDNQITTVAPGAFQTLF-SLSTLNLLSNPFN  359 (498)
T ss_pred             eeeecCCeeEEEecccccccc-eeeeeehccCccc
Confidence            999999999988899998888 8999999888664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.48  E-value=5.3e-16  Score=125.15  Aligned_cols=173  Identities=28%  Similarity=0.354  Sum_probs=95.5

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCcccc-------------------------CCCccceeeecC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-------------------------NMSTLKIIILIN   57 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~   57 (204)
                      +.|+...|.+. .+|+.......|++|+++.|.+.......+.                         ..+.|+.|.+.+
T Consensus       290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            33444444444 4455455566666666666665433222111                         122344444555


Q ss_pred             CcceeecCCccCCCCCCccEEEcCCCcCccCCC-ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496           58 NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        58 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                      |.+++..-+.+. .++.|+.|++++|+++ .+| ..+.++..|++|++++|.++ .+|..+..+..|+.|...+|++..+
T Consensus       369 N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f  445 (1081)
T KOG0618|consen  369 NHLTDSCFPVLV-NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF  445 (1081)
T ss_pred             Ccccccchhhhc-cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec
Confidence            554444333333 4555555555555555 333 23444555555555555555 3445555555555555555555555


Q ss_pred             cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeecccc
Q 047496          137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI  187 (204)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~  187 (204)
                      |       .+..++.|+.+|++.|.++..........+ +|++||+++|.-
T Consensus       446 P-------e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p-~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  446 P-------ELAQLPQLKVLDLSCNNLSEVTLPEALPSP-NLKYLDLSGNTR  488 (1081)
T ss_pred             h-------hhhhcCcceEEecccchhhhhhhhhhCCCc-ccceeeccCCcc
Confidence            4       567788899999999998743333322324 899999999964

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.40  E-value=2.9e-13  Score=104.85  Aligned_cols=178  Identities=31%  Similarity=0.472  Sum_probs=133.2

Q ss_pred             cceEEccCCccccccChhccCCC-CCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLR-NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++.|++.++.+. .+++...... +|+.|++++|.+... +..+..+++|+.|++++|++. .++.... ..+.|+.|++
T Consensus       118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L~l  193 (394)
T COG4886         118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNLDL  193 (394)
T ss_pred             eeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhheec
Confidence            567778888777 6666666664 888888888888754 234667888888888888886 6676554 5788888888


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      +++.+. .++........|.++.+++|... ..+..+..+.++..+.+..|++...+      ..++.++.++++++++|
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~------~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP------ESIGNLSNLETLDLSNN  265 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeecc------chhccccccceeccccc
Confidence            888887 66665556666888888888644 34566777888888888888776643      45777888999999999


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccchh
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQA  194 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  194 (204)
                      .++. ++. +.... +++.|++++|.+....|..
T Consensus       266 ~i~~-i~~-~~~~~-~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         266 QISS-ISS-LGSLT-NLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccc-ccc-ccccC-ccCEEeccCccccccchhh
Confidence            9984 443 77777 8999999999887655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=6.8e-15  Score=113.50  Aligned_cols=166  Identities=26%  Similarity=0.383  Sum_probs=143.6

Q ss_pred             CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496           22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL  101 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  101 (204)
                      .+..-...+++.|++. ..|..+..+..|+.+.++.|.+- .+|..+. .+..|..++++.|.++ .+|..++.++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3455667788888887 44666777788889999888875 7888887 7899999999999998 8899999998 999


Q ss_pred             EeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEE
Q 047496          102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL  181 (204)
Q Consensus       102 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~  181 (204)
                      +-+++|+++ .+|..++....|..|+.+.|++...+      ..++++.+|+.+++..|.+. .+|.++..++  |.+||
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slp------sql~~l~slr~l~vrRn~l~-~lp~El~~Lp--Li~lD  217 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLP------SQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--LIRLD  217 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhhhch------HHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--eeeee
Confidence            999999998 77888998899999999999999887      56888899999999999998 6788888775  99999


Q ss_pred             eeccccccccchhhhhhhhhcc
Q 047496          182 ITNCSISGNIPQAISTKYLFQN  203 (204)
Q Consensus       182 l~~n~~~~~~~~~~~~l~~l~~  203 (204)
                      +++|+++ .+|-+|+++.+|+.
T Consensus       218 fScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  218 FSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             cccCcee-ecchhhhhhhhhee
Confidence            9999998 88999999999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=9e-14  Score=104.20  Aligned_cols=184  Identities=22%  Similarity=0.185  Sum_probs=114.1

Q ss_pred             CcceEEccCCccccccC-hhccCCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccE
Q 047496            1 MLKGIYLGYNKLHGEIP-HEIANLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEH   77 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   77 (204)
                      +|+...+.++.+..... .....+++++.|++++|-+...  .......+|+|+.|+++.|.+.-.........++.++.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            36677778777662211 3456788899999998866543  22334468888889998888753333333335778888


Q ss_pred             EEcCCCcCccC-CCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEE
Q 047496           78 LNLELNRFSGT-IPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLN  156 (204)
Q Consensus        78 L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~  156 (204)
                      |.++.|+++.. +......++++..|.+..|............+..|++|++++|++-+++..    ...+.++.|+.++
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~----~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG----YKVGTLPGLNQLN  277 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc----cccccccchhhhh
Confidence            88888887632 223345567777777777753223223344466777778877777666421    3556677777777


Q ss_pred             eeCCcCCCC-CCcc-----ccccccCccEEEeecccccc
Q 047496          157 LIGNPLDGF-LPSS-----IGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       157 l~~n~~~~~-~~~~-----~~~~~~~L~~L~l~~n~~~~  189 (204)
                      ++.+.+... .|+.     ....+ +|++|+++.|++.+
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRD  315 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccc-cceeeecccCcccc
Confidence            777776531 2221     12233 77777777777753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=1.7e-12  Score=88.37  Aligned_cols=127  Identities=29%  Similarity=0.365  Sum_probs=44.1

Q ss_pred             CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496           46 NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW  125 (204)
Q Consensus        46 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  125 (204)
                      +...+++|+++++.++ .+ +.+...+.+|+.|++++|.+. .+ .++..++.|++|++++|.++...+.....+++|+.
T Consensus        17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            4446677777777765 32 334334667777777777776 33 34667777888888888777442222235777888


Q ss_pred             EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCc----cccccccCccEEEe
Q 047496          126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS----SIGNLSMSLETLLI  182 (204)
Q Consensus       126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~L~l  182 (204)
                      |++++|.+.+...    ...++.+++|+.|++.+|+++.. +.    .+..++ +|+.||-
T Consensus        93 L~L~~N~I~~l~~----l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP-~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNE----LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLP-SLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCC----CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-T-T-SEETT
T ss_pred             EECcCCcCCChHH----hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcC-hhheeCC
Confidence            8888887766642    25566778888888888887643 22    234455 7777653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.24  E-value=1.2e-12  Score=95.68  Aligned_cols=193  Identities=18%  Similarity=0.220  Sum_probs=120.4

Q ss_pred             cceEEccCCccccc----cChhccCCCCCcEEEccCc---cccccCCc-------cccCCCccceeeecCCcceeecCCc
Q 047496            2 LKGIYLGYNKLHGE----IPHEIANLRNLEALALGMN---NLVGVVSA-------PIFNMSTLKIIILINNSLFGSLPSR   67 (204)
Q Consensus         2 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~   67 (204)
                      ++.++|++|.+...    +...+.+.++|+..+++.-   ......|.       .+...++|+++++|.|-+....++.
T Consensus        32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~  111 (382)
T KOG1909|consen   32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRG  111 (382)
T ss_pred             eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHH
Confidence            56788888887743    3334455667777777642   11112222       2335668888888888654222222


Q ss_pred             ---cCCCCCCccEEEcCCCcCccCCC-------------ccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEE
Q 047496           68 ---IGLSLPTVEHLNLELNRFSGTIP-------------SSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLG  127 (204)
Q Consensus        68 ---~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~  127 (204)
                         +..++..|++|.+++|++.....             ......++|+.+..++|.+...    ....++..+.|+.+.
T Consensus       112 l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr  191 (382)
T KOG1909|consen  112 LEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR  191 (382)
T ss_pred             HHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence               22357778888888888763211             2234456788888888877532    234566777888888


Q ss_pred             ccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC----CCccccccccCccEEEeeccccccccchhhh
Q 047496          128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF----LPSSIGNLSMSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      ++.|.+..... .....++.+|++|+.||+.+|-++.+    +...+..++ +|+.+.+++|-+......+|.
T Consensus       192 ~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  192 LSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             EecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHHH
Confidence            88887765433 34556777888888888888877543    223344555 777888888877766555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1.1e-11  Score=84.42  Aligned_cols=129  Identities=26%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             CCCCCcEEEccCccccccCCcccc-CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc-cCCCCC
Q 047496           22 NLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKL   99 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L   99 (204)
                      +...+++|++++|.|+.+.  .+. .+.+|+.|++++|.+. .+. ++. .++.|++|++++|.++ .+...+ ..+++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~-~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQIT-KLE-GLP-GLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T-T-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc--chhhhhcCCCEEECCCCCCc-ccc-Ccc-ChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            4456788999999888642  233 4678899999999886 443 343 6888999999999998 554444 357899


Q ss_pred             CEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEee
Q 047496          100 TLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLI  158 (204)
Q Consensus       100 ~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  158 (204)
                      ++|.+++|.+.... -..+..+++|+.|++.+|++...+.  -....+..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh--HHHHHHHHcChhheeCCE
Confidence            99999999886432 2457788999999999998876532  122356678889888754

>PLN03150 hypothetical protein; Provisional

Probab=99.19  E-value=8.7e-11  Score=95.70  Aligned_cols=107  Identities=33%  Similarity=0.576  Sum_probs=58.0

Q ss_pred             ccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496           75 VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS  154 (204)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  154 (204)
                      ++.|++.++.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+....+     ..++.+++|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-----~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-----ESLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-----hHHhcCCCCCE
Confidence            4455555555555555555555556666665555555555555555556666666555543311     34555555666


Q ss_pred             EEeeCCcCCCCCCccccccccCccEEEeeccc
Q 047496          155 LNLIGNPLDGFLPSSIGNLSMSLETLLITNCS  186 (204)
Q Consensus       155 l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  186 (204)
                      |++++|.+++.+|..+.....++..+++++|.
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCc
Confidence            66666655555555554432244555555553

>PLN03150 hypothetical protein; Provisional

Probab=99.18  E-value=6.4e-11  Score=96.49  Aligned_cols=106  Identities=31%  Similarity=0.568  Sum_probs=79.8

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      ++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|+.+. .+++|+.|++++|.+...+|..+..+++|++|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            66778888887777777777788888888888887777777665 67788888888888777777777788888888888


Q ss_pred             CCcccccccccccCC-CCCcEEEccCcc
Q 047496          106 GNTFSGLIPDTIGNL-RNLEWLGLAYNN  132 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l-~~L~~L~l~~~~  132 (204)
                      +|.+.+..|..+... .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            888877777766543 455667777664

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.7e-12  Score=96.45  Aligned_cols=189  Identities=24%  Similarity=0.247  Sum_probs=132.2

Q ss_pred             CcceEEccCCcccc--ccChhccCCCCCcEEEccCccccccCCcc-ccCCCccceeeecCCcceeecCCccCCCCCCccE
Q 047496            1 MLKGIYLGYNKLHG--EIPHEIANLRNLEALALGMNNLVGVVSAP-IFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEH   77 (204)
Q Consensus         1 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~   77 (204)
                      +++.|+++.|-+..  .+......+++|+.|+++.|.+.-..... -..+++++.|.++.|.+++.--..+...+|.|+.
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~  226 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV  226 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence            36788999886652  33344567899999999999877433221 2257899999999999874433333347899999


Q ss_pred             EEcCCCcCccCCCccccCCCCCCEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcc-cchhhhccccCCCccEE
Q 047496           78 LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTS-KLSFLSSLANCKKLRSL  155 (204)
Q Consensus        78 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~l  155 (204)
                      |++..|............+..|++|++++|.+.... ....+.++.|..|.++.+++.++.. .-...+-....++|+.|
T Consensus       227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L  306 (505)
T KOG3207|consen  227 LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL  306 (505)
T ss_pred             hhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence            999998422132333455678999999999886432 2457889999999999999877621 00011224557899999


Q ss_pred             EeeCCcCC-CCCCccccccccCccEEEeeccccccc
Q 047496          156 NLIGNPLD-GFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       156 ~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      ++..|++. +.....++.+. +|++|.+..|.++.+
T Consensus       307 ~i~~N~I~~w~sl~~l~~l~-nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  307 NISENNIRDWRSLNHLRTLE-NLKHLRITLNYLNKE  341 (505)
T ss_pred             ecccCccccccccchhhccc-hhhhhhccccccccc
Confidence            99999984 23445666666 888888888877653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=4.4e-12  Score=91.58  Aligned_cols=129  Identities=28%  Similarity=0.361  Sum_probs=74.3

Q ss_pred             CccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEE
Q 047496           48 STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG  127 (204)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~  127 (204)
                      ..|+++|+++|.++ .+.+++. -.|+++.|++++|++. .+ ..+..+++|+.|++++|.++. ...+=..+-+++.|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhh-hccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence            34666666666664 4444443 4566666666666665 22 225566666666666666552 223333455666666


Q ss_pred             ccCccCCCCcccchhhhccccCCCccEEEeeCCcCCC-CCCccccccccCccEEEeecccccc
Q 047496          128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG-FLPSSIGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~  189 (204)
                      +++|.+.+..       .+..+-+|..||+++|.|.. +--..++.++ .|+++.+.+|++.+
T Consensus       359 La~N~iE~LS-------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETLS-------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhhh-------hhHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccc
Confidence            6666555442       34555666777777776632 2233456666 67777777777663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.13  E-value=4.3e-11  Score=92.82  Aligned_cols=167  Identities=38%  Similarity=0.503  Sum_probs=119.9

Q ss_pred             ccCCCCCcEEEccCccccccCCccccCCC-ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496           20 IANLRNLEALALGMNNLVGVVSAPIFNMS-TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK   98 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   98 (204)
                      +.....++.+++.++.++...+. ..... +|+.|+++++.+. .++..+. .+++|+.|++..|.+. .++......++
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~-~l~~~~~~~~~  187 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSN  187 (394)
T ss_pred             hhcccceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh-hhhhhhhhhhh
Confidence            44556788888888888755443 34453 8888888888886 6654555 7888888888888887 66665557788


Q ss_pred             CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCcc
Q 047496           99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE  178 (204)
Q Consensus        99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  178 (204)
                      ++.++++++.+. ..|........|+++.+++|.....+      ..+..+.++..+.+..|++. ..+..+..++ +++
T Consensus       188 L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~-~l~  258 (394)
T COG4886         188 LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLE-DLPESIGNLS-NLE  258 (394)
T ss_pred             hhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceee-eccchhcccc-ccc
Confidence            888888888887 45555566667888888888543433      45667777888888888876 3356667777 899


Q ss_pred             EEEeeccccccccchhhhhhhhh
Q 047496          179 TLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       179 ~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      .|++++|.++.. +. ++.+..+
T Consensus       259 ~L~~s~n~i~~i-~~-~~~~~~l  279 (394)
T COG4886         259 TLDLSNNQISSI-SS-LGSLTNL  279 (394)
T ss_pred             eecccccccccc-cc-ccccCcc
Confidence            999999999854 33 5544443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=3.5e-12  Score=93.31  Aligned_cols=183  Identities=21%  Similarity=0.224  Sum_probs=99.2

Q ss_pred             cceEEccCCccccccChhc----cCCCCCcEEEccCccccccCCc-------------cccCCCccceeeecCCcceeec
Q 047496            2 LKGIYLGYNKLHGEIPHEI----ANLRNLEALALGMNNLVGVVSA-------------PIFNMSTLKIIILINNSLFGSL   64 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~~~   64 (204)
                      |++++|++|-+....++.|    .++..|++|++.+|.+....-.             ....-+.|+++....|.+. ..
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~  172 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NG  172 (382)
T ss_pred             eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cc
Confidence            5666666666554444333    3456666666666665432111             1223456666666666553 21


Q ss_pred             C----CccCCCCCCccEEEcCCCcCccCC----CccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCcc
Q 047496           65 P----SRIGLSLPTVEHLNLELNRFSGTI----PSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNN  132 (204)
Q Consensus        65 ~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~  132 (204)
                      +    ...++..+.|+.+.+.+|++....    ...+..++.|+.|++.+|.++..    +...+..|++|+++++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            1    122334566777777666664221    23456667777777777766422    33455666777777777776


Q ss_pred             CCCCcccchhhhccc-cCCCccEEEeeCCcCCCCCCc----cccccccCccEEEeecccc
Q 047496          133 LTSSTSKLSFLSSLA-NCKKLRSLNLIGNPLDGFLPS----SIGNLSMSLETLLITNCSI  187 (204)
Q Consensus       133 ~~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~~  187 (204)
                      +..-.. .++.+++. ..|+|+.+.+.+|.++.....    .+... +.|+.|++++|.+
T Consensus       253 l~~~Ga-~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek-~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGA-IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK-PDLEKLNLNGNRL  310 (382)
T ss_pred             cccccH-HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc-hhhHHhcCCcccc
Confidence            655432 22333332 346677777777776532111    11222 3677777777766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=1.8e-10  Score=65.06  Aligned_cols=59  Identities=34%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             CCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496           25 NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR   84 (204)
Q Consensus        25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   84 (204)
                      +|++|++++|.++...+..|.++++|++|++++|.+. .+++..+..+++|++|++.+|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555555555444445555555555555555554 4444444455555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=2.3e-10  Score=64.55  Aligned_cols=60  Identities=37%  Similarity=0.474  Sum_probs=41.5

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL   60 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   60 (204)
                      +|++|++++|++....+..|..+++|++|++++|.++...+..|.++++|+.|++++|.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            366777777777644445667777777777777777766666777777777777777653

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.3e-11  Score=89.22  Aligned_cols=132  Identities=24%  Similarity=0.348  Sum_probs=94.1

Q ss_pred             CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496           22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL  101 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  101 (204)
                      ....|+++|+++|.|+.+ .+...-.|.++.|++++|.+. .+.. +. .+++|+.||+++|.++ .....-.++-|+++
T Consensus       282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchhhh-hhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            345678888888887743 333455778888888888875 3333 43 6788888888888876 44444456778888


Q ss_pred             EeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496          102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG  164 (204)
Q Consensus       102 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  164 (204)
                      |.++.|.+...  +.+..+.+|..||+++|++.....    ...++++|-|+++.+.+|.+.+
T Consensus       357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde----V~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE----VNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eehhhhhHhhh--hhhHhhhhheeccccccchhhHHH----hcccccccHHHHHhhcCCCccc
Confidence            88888877632  567778888888888888766532    2567778888888888888763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=9.3e-12  Score=89.67  Aligned_cols=182  Identities=18%  Similarity=0.104  Sum_probs=123.5

Q ss_pred             cceEEccCCcccc-ccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecC-CccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHG-EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP-SRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~   79 (204)
                      +++|+|++..++. .....++.|.+|+.|.+.++.+.+.....+....+|+.++++.+....+.. .-++.++..|.+|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            6778888877763 344556788999999999999888777778888899999999886432222 23345788899999


Q ss_pred             cCCCcCccCCCcc-ccC-CCCCCEEeccCCccc--ccccc-cccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496           80 LELNRFSGTIPSS-ITN-ASKLTLLKLGGNTFS--GLIPD-TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS  154 (204)
Q Consensus        80 l~~~~~~~~~~~~-~~~-~~~L~~l~l~~~~~~--~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  154 (204)
                      +++|......... +.. -.+|+.|+++++.-.  ....+ -...+++|.+||+++|......    ...++-.++.|++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~----~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFKFNYLQH  342 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch----HHHHHHhcchhee
Confidence            9999876432221 122 256788888887432  11112 2356899999999998654432    2255667888999


Q ss_pred             EEeeCCc-CCCCCCccccccccCccEEEeeccccc
Q 047496          155 LNLIGNP-LDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       155 l~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +.++.|. +..+..-.+...+ +|.+|++.++--.
T Consensus       343 lSlsRCY~i~p~~~~~l~s~p-sl~yLdv~g~vsd  376 (419)
T KOG2120|consen  343 LSLSRCYDIIPETLLELNSKP-SLVYLDVFGCVSD  376 (419)
T ss_pred             eehhhhcCCChHHeeeeccCc-ceEEEEeccccCc
Confidence            9998886 3323333445555 8999998887433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=2.2e-09  Score=77.66  Aligned_cols=159  Identities=20%  Similarity=0.227  Sum_probs=93.9

Q ss_pred             cceEEccCCccc--cccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      ++.++|.+|.++  ..+...+..||.|+.|+++.|.+...+-..-....+|+.|.+.++.+.+.........+|+++++.
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            466888888776  355556678889999999988877543322245668888888888877665555555778888887


Q ss_pred             cCCCcCccC--CCccccC---------------------------CCCCCEEeccCCccccc-ccccccCCCCCcEEEcc
Q 047496           80 LELNRFSGT--IPSSITN---------------------------ASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLA  129 (204)
Q Consensus        80 l~~~~~~~~--~~~~~~~---------------------------~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~  129 (204)
                      ++.|.....  .......                           ++++..+-+..|.+... ....+...+.+..|.++
T Consensus       153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~  232 (418)
T KOG2982|consen  153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLG  232 (418)
T ss_pred             hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhc
Confidence            777743210  0011111                           13333333444433211 11233444555556666


Q ss_pred             CccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496          130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG  164 (204)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  164 (204)
                      .+++.+..    ..+++.+.+.|..+.++.+.+.+
T Consensus       233 ~~~idswa----svD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  233 ANNIDSWA----SVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccccccHH----HHHHHcCCchhheeeccCCcccc
Confidence            66665442    23566667777777777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.69  E-value=4.8e-08  Score=66.92  Aligned_cols=128  Identities=26%  Similarity=0.320  Sum_probs=89.1

Q ss_pred             ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEc
Q 047496           49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL  128 (204)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l  128 (204)
                      .-+.+++++.++.  ....+.....+...+|+.+|.+. . ...+..++.|++|.+++|.++.+.|..-..+++|..|.+
T Consensus        20 ~e~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   20 RERELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             ccccccccccccc--chhhccccccccceecccccchh-h-cccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            3456667776653  22223334566778888888774 2 345778888888888888888776665556778888888


Q ss_pred             cCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCC---CccccccccCccEEEeecc
Q 047496          129 AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL---PSSIGNLSMSLETLLITNC  185 (204)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~~~~~L~~L~l~~n  185 (204)
                      .+|.+..+..    .+.+..||+|++|.+-+|.++..-   ...+..++ +|+.||++.-
T Consensus        96 tnNsi~~l~d----l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp-~l~~LDF~kV  150 (233)
T KOG1644|consen   96 TNNSIQELGD----LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP-SLRTLDFQKV  150 (233)
T ss_pred             cCcchhhhhh----cchhccCCccceeeecCCchhcccCceeEEEEecC-cceEeehhhh
Confidence            8888876642    256777888888888888876432   23455666 8888887754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.1e-09  Score=82.97  Aligned_cols=109  Identities=28%  Similarity=0.368  Sum_probs=56.3

Q ss_pred             ccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496           20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL   99 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   99 (204)
                      +..+.+++.+++.+|.+...... +..+++|+.|++++|.++ .+.. +. .++.|+.|++.+|.+. .. ..+..+++|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~-~i~~-l~-~l~~L~~L~l~~N~i~-~~-~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKIT-KLEG-LS-TLTLLKELNLSGNLIS-DI-SGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhcccc-hhhhhcchheeccccccc-cccc-hh-hccchhhheeccCcch-hc-cCCccchhh
Confidence            44556666666666666543221 344566666666666654 2221 11 3444666666666664 22 223445566


Q ss_pred             CEEeccCCccccccc-ccccCCCCCcEEEccCccCCC
Q 047496          100 TLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNNLTS  135 (204)
Q Consensus       100 ~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  135 (204)
                      +.+++++|.+...-+ . ...+..++.+++.+|.+..
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            666666665553322 1 3455555555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.66  E-value=2.9e-09  Score=87.16  Aligned_cols=145  Identities=18%  Similarity=0.239  Sum_probs=87.5

Q ss_pred             CCCcEEEccCcccc-ccCCcccc-CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496           24 RNLEALALGMNNLV-GVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL  101 (204)
Q Consensus        24 ~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  101 (204)
                      .+|++|++++...- ...+..++ -+|.|+.|.+++-.+...--..++.++|+|..||++++.++ .+ .+++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            46777777775322 11222222 47788888887766543322344557788888888888776 33 55777788888


Q ss_pred             EeccCCcccc-cccccccCCCCCcEEEccCccCCCCcccc-hhhhccccCCCccEEEeeCCcCCCCCCccc
Q 047496          102 LKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLTSSTSKL-SFLSSLANCKKLRSLNLIGNPLDGFLPSSI  170 (204)
Q Consensus       102 l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  170 (204)
                      |.+.+-.+.. ..-..+-.+++|+.||+|.......+... ...+.-..+|+|+.||.+++.++++..+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            8777766542 12234667788888888776544433110 122334457788888888877765444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.65  E-value=1.1e-08  Score=85.93  Aligned_cols=84  Identities=26%  Similarity=0.361  Sum_probs=39.8

Q ss_pred             ccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496           20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL   99 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   99 (204)
                      |..|+.|+.||+++|.--+..|..++.+-+|++|+++++.+. .+|.++. .+.+|.+|++..+......+.....+.+|
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccc
Confidence            344555555555554443444444445555555555555544 4454444 44455555554444332333333444555


Q ss_pred             CEEecc
Q 047496          100 TLLKLG  105 (204)
Q Consensus       100 ~~l~l~  105 (204)
                      ++|.+.
T Consensus       645 r~L~l~  650 (889)
T KOG4658|consen  645 RVLRLP  650 (889)
T ss_pred             cEEEee
Confidence            555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.56  E-value=1.6e-08  Score=72.36  Aligned_cols=149  Identities=17%  Similarity=0.199  Sum_probs=72.8

Q ss_pred             cCCCccceeeecCCcceeecCCcc---CCCCCCccEEEcCCCcCccCCCcc-------------ccCCCCCCEEeccCCc
Q 047496           45 FNMSTLKIIILINNSLFGSLPSRI---GLSLPTVEHLNLELNRFSGTIPSS-------------ITNASKLTLLKLGGNT  108 (204)
Q Consensus        45 ~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~l~l~~~~  108 (204)
                      ..+|+|++.+++.|-+....|+.+   .++...|++|.+++|++....-..             ...-+.|+.+.++.|+
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            355666666666665443333221   124455666666666654221111             1223456666666665


Q ss_pred             ccccc----cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCC----CccccccccCccEE
Q 047496          109 FSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL----PSSIGNLSMSLETL  180 (204)
Q Consensus       109 ~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~~~~~L~~L  180 (204)
                      +..-.    ...+..-.+|+.+.+..|.+......+.....+..+.+|+.||+++|-++-..    ..+++.++ .|+.|
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL  247 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLREL  247 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhc
Confidence            54111    11222234566666666666544332223334455666677777776664322    22334444 56666


Q ss_pred             Eeeccccccccchh
Q 047496          181 LITNCSISGNIPQA  194 (204)
Q Consensus       181 ~l~~n~~~~~~~~~  194 (204)
                      .+.+|-++....++
T Consensus       248 ~lnDClls~~G~~~  261 (388)
T COG5238         248 RLNDCLLSNEGVKS  261 (388)
T ss_pred             cccchhhccccHHH
Confidence            66666655544433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.53  E-value=6.8e-09  Score=81.05  Aligned_cols=169  Identities=28%  Similarity=0.419  Sum_probs=93.9

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++.|++.+|.+. .+...+..+++|++|++++|.|+...+  +..++.|+.|++++|.+. .+.. +. .++.|+.++++
T Consensus        97 l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~~-~l~~L~~l~l~  170 (414)
T KOG0531|consen   97 LEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-LE-SLKSLKLLDLS  170 (414)
T ss_pred             eeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-Cc-cchhhhcccCC
Confidence            456666666665 222225566777777777777765432  334555777777777765 3222 21 36667777777


Q ss_pred             CCcCccCCCcc-ccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC--CccEEEee
Q 047496           82 LNRFSGTIPSS-ITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK--KLRSLNLI  158 (204)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~L~~l~l~  158 (204)
                      +|.+.. .... ...+.+++.+.++++.+...  ..+..+..+..+++..|.+..+.       .+....  +|+.++++
T Consensus       171 ~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~-------~l~~~~~~~L~~l~l~  240 (414)
T KOG0531|consen  171 YNRIVD-IENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLE-------GLNELVMLHLRELYLS  240 (414)
T ss_pred             cchhhh-hhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceecc-------CcccchhHHHHHHhcc
Confidence            777652 2221 35666667777777665522  23333444444466666555442       122222  26777777


Q ss_pred             CCcCCCCCCccccccccCccEEEeeccccc
Q 047496          159 GNPLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       159 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +|.+.. .+..+..+. .+..+++.+|.+.
T Consensus       241 ~n~i~~-~~~~~~~~~-~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  241 GNRISR-SPEGLENLK-NLPVLDLSSNRIS  268 (414)
T ss_pred             cCcccc-ccccccccc-cccccchhhcccc
Confidence            777662 223344444 6667777776655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=1.5e-08  Score=81.47  Aligned_cols=84  Identities=35%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             cCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccccc
Q 047496           94 TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL  173 (204)
Q Consensus        94 ~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  173 (204)
                      .-++.++.|+++.|.++..  ..+..++.|++||+++|.+..+|.     ....+| +|..|.+.+|.++.  ...+.++
T Consensus       184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~-----l~~~gc-~L~~L~lrnN~l~t--L~gie~L  253 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ-----LSMVGC-KLQLLNLRNNALTT--LRGIENL  253 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc-----cchhhh-hheeeeecccHHHh--hhhHHhh
Confidence            3334455555555555432  245555555555555555554442     111122 25555555555441  1233444


Q ss_pred             ccCccEEEeeccccc
Q 047496          174 SMSLETLLITNCSIS  188 (204)
Q Consensus       174 ~~~L~~L~l~~n~~~  188 (204)
                      . +|+.||+++|-+.
T Consensus       254 k-sL~~LDlsyNll~  267 (1096)
T KOG1859|consen  254 K-SLYGLDLSYNLLS  267 (1096)
T ss_pred             h-hhhccchhHhhhh
Confidence            4 5666666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.43  E-value=2e-07  Score=78.48  Aligned_cols=163  Identities=30%  Similarity=0.392  Sum_probs=112.4

Q ss_pred             CCCCCcEEEccCcc--ccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496           22 NLRNLEALALGMNN--LVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL   99 (204)
Q Consensus        22 ~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   99 (204)
                      .++.|+.|-+..|.  +.......|..++.|++||+++|.-.+++|..+. .+-+|++|++.++.+. .+|..+..++.|
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            34578888888885  4545555577899999999998776568888887 7889999999999998 889999999999


Q ss_pred             CEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC-----------------
Q 047496          100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL-----------------  162 (204)
Q Consensus       100 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~-----------------  162 (204)
                      .+|++..+......+.....+.+|+.|.+.........   .....+..+.+|+.+.+.....                 
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~---~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~  697 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK---LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ  697 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccch---hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence            99999887765555666667888999888665422111   1223344444444444432221                 


Q ss_pred             --------CCCCCccccccccCccEEEeeccccccc
Q 047496          163 --------DGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       163 --------~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                              ....+..+..+. +|+.|.+.++.+...
T Consensus       698 ~l~~~~~~~~~~~~~~~~l~-~L~~L~i~~~~~~e~  732 (889)
T KOG4658|consen  698 SLSIEGCSKRTLISSLGSLG-NLEELSILDCGISEI  732 (889)
T ss_pred             hhhhcccccceeeccccccc-CcceEEEEcCCCchh
Confidence                    011233344555 788888888887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=9.3e-09  Score=66.20  Aligned_cols=111  Identities=24%  Similarity=0.291  Sum_probs=72.9

Q ss_pred             CCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEE
Q 047496           25 NLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLL  102 (204)
Q Consensus        25 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  102 (204)
                      .+..++++.|.+...  .+..+.....|...++++|.+. .+|+.+...++.++.+++.+|.+. .+|..+..++.|+.+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            345566666655432  1222334556666777777775 667766666667777777777776 667777777777777


Q ss_pred             eccCCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496          103 KLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS  138 (204)
Q Consensus       103 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  138 (204)
                      ++..|.+. ..|..+..+.++..|+..+|.+..++.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcH
Confidence            77777776 456666667777777777777666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=2.4e-09  Score=77.50  Aligned_cols=156  Identities=19%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             CcEEEccCcccccc-CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc-CccC-CCccccCCCCCCEE
Q 047496           26 LEALALGMNNLVGV-VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR-FSGT-IPSSITNASKLTLL  102 (204)
Q Consensus        26 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~l  102 (204)
                      ++++|++...++.. ....+..+.+|+.|.+.+..+.+.+...+. .-..|+.++++.+. ++.. ....+..++.|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            55555555555432 222334455566666666655544444443 44556666665543 3211 11223455666666


Q ss_pred             eccCCccccccc-ccccC-CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc-CCCCCCccccccccCccE
Q 047496          103 KLGGNTFSGLIP-DTIGN-LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP-LDGFLPSSIGNLSMSLET  179 (204)
Q Consensus       103 ~l~~~~~~~~~~-~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~  179 (204)
                      ++++|....... ..+.+ -++|..|+++++.-.-...  .+....+.+|.+.+||+++|. ++.....+|.+++ .|++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~  342 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQH  342 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hhee
Confidence            666665432111 11222 1455566666553211100  111234567788888888875 4544455666776 7888


Q ss_pred             EEeecc
Q 047496          180 LLITNC  185 (204)
Q Consensus       180 L~l~~n  185 (204)
                      |.++.|
T Consensus       343 lSlsRC  348 (419)
T KOG2120|consen  343 LSLSRC  348 (419)
T ss_pred             eehhhh
Confidence            888777

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=5.6e-09  Score=83.83  Aligned_cols=126  Identities=30%  Similarity=0.444  Sum_probs=83.8

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc-cCCCCCCEEec
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKL  104 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l  104 (204)
                      |...++++|.+. .+...+.-++.++.|++++|+++ ++. .+. .+++|++||+++|.+. .+|.-- ..++ |+.|.+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhhh-heeeee
Confidence            444444444444 22233444678888899988886 433 444 7888999999988887 555422 2333 888888


Q ss_pred             cCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          105 GGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       105 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      .+|.++..  ..+.++.+|+.||+++|-+.+...    +..+..+..|+.|.+.||.+.
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hse----L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE----LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchh----hhHHHHHHHHHHHhhcCCccc
Confidence            88887733  557788888889998886655531    133445667888888888874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.29  E-value=1e-06  Score=45.85  Aligned_cols=36  Identities=36%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCcccc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLV   37 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   37 (204)
                      +|++|++++|++. .+|+.++.|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3556666666655 44445556666666666666555

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.28  E-value=4.4e-07  Score=65.23  Aligned_cols=176  Identities=16%  Similarity=0.206  Sum_probs=120.0

Q ss_pred             ccCCCCCcEEEccCccccccCCcccc----CCCccceeeecCCcce---eecC-------CccCCCCCCccEEEcCCCcC
Q 047496           20 IANLRNLEALALGMNNLVGVVSAPIF----NMSTLKIIILINNSLF---GSLP-------SRIGLSLPTVEHLNLELNRF   85 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~---~~~~-------~~~~~~~~~L~~L~l~~~~~   85 (204)
                      +..+..+..+++++|-|.......++    +-.+|++.+++.....   ++++       +.+. .||+|+.+++++|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeecccccc
Confidence            34578899999999998876554443    4567888887765332   1222       2333 789999999999999


Q ss_pred             ccCCCccc----cCCCCCCEEeccCCcccccc----ccc---------ccCCCCCcEEEccCccCCCCcccchhhhcccc
Q 047496           86 SGTIPSSI----TNASKLTLLKLGGNTFSGLI----PDT---------IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLAN  148 (204)
Q Consensus        86 ~~~~~~~~----~~~~~L~~l~l~~~~~~~~~----~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  148 (204)
                      ....++.+    ++-+.|.+|.+++|.+....    ..+         ...-|.|+......|++...+... +...+..
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~-~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL-SAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH-HHHHHHh
Confidence            87766554    56688999999999875322    111         224578999999999987765421 3334455


Q ss_pred             CCCccEEEeeCCcCCCCCCcc--ccc--cccCccEEEeeccccccccchhhhh
Q 047496          149 CKKLRSLNLIGNPLDGFLPSS--IGN--LSMSLETLLITNCSISGNIPQAIST  197 (204)
Q Consensus       149 ~~~L~~l~l~~n~~~~~~~~~--~~~--~~~~L~~L~l~~n~~~~~~~~~~~~  197 (204)
                      ...|+++.+..|.|--+....  +-+  ...+|+.||+++|.++-.....++.
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            568999999999886331111  111  1238999999999998665555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=8.4e-07  Score=46.14  Aligned_cols=36  Identities=42%  Similarity=0.578  Sum_probs=17.0

Q ss_pred             CCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      +|+.|++++|++.+++      ..++++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~------~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP------PELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHG------GHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccC------chHhCCCCCCEEEecCCCCC
Confidence            4555555555555443      22445555555555555544

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.21  E-value=4.2e-07  Score=74.79  Aligned_cols=141  Identities=24%  Similarity=0.318  Sum_probs=101.4

Q ss_pred             CccceeeecCCcce-eecCCccCCCCCCccEEEcCCCcCc-cCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496           48 STLKIIILINNSLF-GSLPSRIGLSLPTVEHLNLELNRFS-GTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW  125 (204)
Q Consensus        48 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  125 (204)
                      .+|+.|++++.... ...+..++.-+|.|+.|.+.+-.+. .+.......+++|..||+++++++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            58999999886532 2345556667899999999987654 22334456789999999999999844  77899999999


Q ss_pred             EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCC--Cccc----cccccCccEEEeeccccccccchhh
Q 047496          126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL--PSSI----GNLSMSLETLLITNCSISGNIPQAI  195 (204)
Q Consensus       126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~--~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~  195 (204)
                      |.+.+=.+....    ....+-++++|+.||+|..+.....  ...+    ..++ +|+.||.++..+....-+.+
T Consensus       200 L~mrnLe~e~~~----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  200 LSMRNLEFESYQ----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             HhccCCCCCchh----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHHHH
Confidence            988886665533    2246677999999999998865322  1111    1244 99999999988776544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.18  E-value=1.6e-05  Score=51.72  Aligned_cols=122  Identities=20%  Similarity=0.289  Sum_probs=54.6

Q ss_pred             hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496           19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK   98 (204)
Q Consensus        19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   98 (204)
                      .|..+.+|+.+.+.. .+.......|..+.+|+.+.+.++ +. .++...+..++.++.+.+.. .+.......+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            355666777777764 455555566666767777777664 33 55666665666677777755 332123345556677


Q ss_pred             CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCc
Q 047496           99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKL  152 (204)
Q Consensus        99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L  152 (204)
                      ++.+.+..+ +.......+... .++.+.+.. .+..++.     .++.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-----~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-----NAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---------GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-----ccccccccC
Confidence            777777554 443444456665 677776654 3333432     355555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.16  E-value=7.7e-08  Score=62.05  Aligned_cols=105  Identities=21%  Similarity=0.280  Sum_probs=84.3

Q ss_pred             eEEccCCccccccCh---hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            4 GIYLGYNKLHGEIPH---EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      .++|+.|++- .+++   .+.....|+.+++++|.+..+.+..-...+.++++++.+|.+. .+|..+. .++.|+.+++
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhhccc
Confidence            4677788664 3333   3556788999999999999665554445679999999999998 8999866 8999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCccccc
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGL  112 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  112 (204)
                      ..|.+. ..|+.+..+.++..|+..++.....
T Consensus       108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             ccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence            999998 7788888899999999888876633

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.10  E-value=1.4e-05  Score=51.94  Aligned_cols=125  Identities=16%  Similarity=0.238  Sum_probs=39.5

Q ss_pred             CccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhc
Q 047496           66 SRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSS  145 (204)
Q Consensus        66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  145 (204)
                      +..+..+.+|+.+.+.. .+.......|..+.+++.+.+..+ +.......+..+..++.+.+.. .+..++.     .+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-----~~   76 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-----NA   76 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-----TT
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-----cc
Confidence            33333444444444443 222222333444444555555442 3323333444554555555543 2222221     24


Q ss_pred             cccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          146 LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       146 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +..++.++.+++..+ +. .+........ +++.+.+.. .++.....+|.+++.||
T Consensus        77 F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            444555555555443 22 1122222223 455555544 33334455666665553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.03  E-value=0.00012  Score=56.55  Aligned_cols=55  Identities=18%  Similarity=0.190  Sum_probs=27.9

Q ss_pred             CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496           22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN   83 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   83 (204)
                      .+.+++.|++++|.++.. |. +  ..+|+.|.+++|.-...+|..+   .+.|+.|.+.+|
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-PV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-CC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            356666666666655533 21 1  1246666666544332444322   235666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=1.7e-05  Score=54.70  Aligned_cols=105  Identities=21%  Similarity=0.245  Sum_probs=66.4

Q ss_pred             CCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccC-CCccccCCCCCCEE
Q 047496           24 RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGT-IPSSITNASKLTLL  102 (204)
Q Consensus        24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l  102 (204)
                      .+...+|++.|.+...  ..|..++.|..|.+.+|.++ .+.+.+...+++|..|.+.+|++..- -...+..+++|++|
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4566777777766532  23556777777777777776 56666655667777777777777521 12335666777777


Q ss_pred             eccCCcccccc---cccccCCCCCcEEEccCc
Q 047496          103 KLGGNTFSGLI---PDTIGNLRNLEWLGLAYN  131 (204)
Q Consensus       103 ~l~~~~~~~~~---~~~l~~l~~L~~L~l~~~  131 (204)
                      .+-+|.++..-   ...+..+++|+.||...-
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77777665321   123556777777776553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=9.6e-07  Score=64.32  Aligned_cols=162  Identities=20%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             CCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCcc-CCCccccCCCC
Q 047496           22 NLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSG-TIPSSITNASK   98 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~   98 (204)
                      .+..++.+++.+|.+...  ....+.++|.|++|+++.|++...+..... ...+|+.+.+.++.+.. .....+..++.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            456778888888877642  222345678888888888877533222211 45677888877776542 22333455566


Q ss_pred             CCEEeccCCccccc----------ccc-------------------cccCCCCCcEEEccCccCCCCcccchhhhccccC
Q 047496           99 LTLLKLGGNTFSGL----------IPD-------------------TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANC  149 (204)
Q Consensus        99 L~~l~l~~~~~~~~----------~~~-------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  149 (204)
                      +++++++.|++...          .+.                   ....++++..+-+..|.+.+....    +.....
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e----k~se~~  223 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE----KGSEPF  223 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc----ccCCCC
Confidence            66666666633211          000                   001124555555555544433211    233344


Q ss_pred             CCccEEEeeCCcCC-CCCCccccccccCccEEEeecccccc
Q 047496          150 KKLRSLNLIGNPLD-GFLPSSIGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       150 ~~L~~l~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~  189 (204)
                      |.+.-|+++.+.+. +...+++.+++ .|.-|.+..+++..
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~-~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFP-QLVDLRVSENPLSD  263 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCc-hhheeeccCCcccc
Confidence            55556667766663 23344555666 67777777776654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=0.00013  Score=56.33  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             cCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCC-cccccccccccCCCCC
Q 047496           45 FNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN-TFSGLIPDTIGNLRNL  123 (204)
Q Consensus        45 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~L  123 (204)
                      ..+.+++.|++++|.+. .+|.    -.++|+.|.+.+|.-...+|..+  ..+|++|.+++| .+. .+|.      .|
T Consensus        49 ~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence            34688999999999876 6772    23469999998865443556544  357999999988 433 3333      35


Q ss_pred             cEEEccCcc---CCCCcccchhhhc----------cc-cC-CCccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496          124 EWLGLAYNN---LTSSTSKLSFLSS----------LA-NC-KKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC  185 (204)
Q Consensus       124 ~~L~l~~~~---~~~~~~~~~~~~~----------~~-~~-~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  185 (204)
                      +.|++..+.   +..+|..+..+..          +. .+ ++|++|++++|... ..|..+   +.+|+.|+++.+
T Consensus       115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n  187 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE  187 (426)
T ss_pred             ceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence            555555443   2333332211110          00 11 47888888887755 334332   347888887765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.48  E-value=3e-05  Score=55.42  Aligned_cols=39  Identities=36%  Similarity=0.566  Sum_probs=16.1

Q ss_pred             CCCccEEEcCCC--cCccCCCccccCCCCCCEEeccCCccc
Q 047496           72 LPTVEHLNLELN--RFSGTIPSSITNASKLTLLKLGGNTFS  110 (204)
Q Consensus        72 ~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~  110 (204)
                      +++|+.|.++.|  ++...+......+++|+++.+++|.+.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            444555555444  222222222223344444444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.44  E-value=5.9e-05  Score=53.97  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=76.6

Q ss_pred             eEEccCCcc-ccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCC--cceeecCCccCCCCCCccEEEc
Q 047496            4 GIYLGYNKL-HGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINN--SLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         4 ~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      .+.+.+|.. .+.+..-...+..++.+.+.+..++...  .+-.+++|++|.++.|  ...+.++.-+- .+|+|+++++
T Consensus        22 ~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~l   98 (260)
T KOG2739|consen   22 ELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNL   98 (260)
T ss_pred             hhhcchhhhcCCCcccccccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhh-hCCceeEEee
Confidence            344444422 2334444456677777777777666432  2445789999999988  44433333333 5699999999


Q ss_pred             CCCcCcc-CCCccccCCCCCCEEeccCCcccccc---cccccCCCCCcEEEcc
Q 047496           81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLI---PDTIGNLRNLEWLGLA  129 (204)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~l~~l~~L~~L~l~  129 (204)
                      +.|++.. ...+.+..+.+|..|++.+|..+...   ...+.-+++|..|+-.
T Consensus        99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen   99 SGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             cCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            9998862 22234567788888899888766421   1235566777776643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=3.6e-06  Score=60.83  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             CccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccccc-ccccCCCCCcEE
Q 047496           48 STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWL  126 (204)
Q Consensus        48 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L  126 (204)
                      .+.++|+..+|.+. .+.  ++..|+.|++|.++-|.++ .+ ..+..|++|++|.+..|.+..... ..+..+++|+.|
T Consensus        19 ~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34445555555443 111  2224555555555555554 22 123444555555554444432211 123444445555


Q ss_pred             EccCcc
Q 047496          127 GLAYNN  132 (204)
Q Consensus       127 ~l~~~~  132 (204)
                      ++..|.
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            544443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.28  E-value=0.0001  Score=32.03  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=14.7

Q ss_pred             CccEEEeeccccccccchhhhhh
Q 047496          176 SLETLLITNCSISGNIPQAISTK  198 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~~~~~~l  198 (204)
                      +|++|++++|.++ .+|..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4677778887777 666666553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=3.6e-05  Score=55.86  Aligned_cols=102  Identities=28%  Similarity=0.217  Sum_probs=80.5

Q ss_pred             CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC
Q 047496           71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK  150 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  150 (204)
                      .+.+.+.|+.++|++...  ....+++.|+.|.++-|.++..  ..+..|++|++|++..|.+.++.    -+..+.++|
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sld----EL~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLD----ELEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHH----HHHHHhcCc
Confidence            466788899999988732  3345788899999999998843  56889999999999999998775    236788999


Q ss_pred             CccEEEeeCCcCCCCCCcc-----ccccccCccEEE
Q 047496          151 KLRSLNLIGNPLDGFLPSS-----IGNLSMSLETLL  181 (204)
Q Consensus       151 ~L~~l~l~~n~~~~~~~~~-----~~~~~~~L~~L~  181 (204)
                      +|+.|.|..|.-.++.+..     ++.++ +|++||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LP-nLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLP-NLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcc-cchhcc
Confidence            9999999999877665554     34566 888876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.69  E-value=0.00097  Score=28.88  Aligned_cols=20  Identities=30%  Similarity=0.361  Sum_probs=11.8

Q ss_pred             CcceEEccCCccccccChhcc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIA   21 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~   21 (204)
                      +|++|++++|++. .+|+.|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            4566666666666 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.50  E-value=2.6e-05  Score=59.41  Aligned_cols=83  Identities=18%  Similarity=0.060  Sum_probs=48.7

Q ss_pred             cceEEccCCccc-cccCh-hccCCCCCcEEEccCcc-ccccCCccc-cCCCccceeeecCCc-ceeecCCccCCCCCCcc
Q 047496            2 LKGIYLGYNKLH-GEIPH-EIANLRNLEALALGMNN-LVGVVSAPI-FNMSTLKIIILINNS-LFGSLPSRIGLSLPTVE   76 (204)
Q Consensus         2 L~~L~l~~~~~~-~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~   76 (204)
                      |+.|.+.+|.-. ..... ....++++++|.+.+|. +++.....+ ..++.|+.+++..|. ++...-+.+...+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            566777777432 22222 23467888888888774 333222222 246778888887743 33333344555788888


Q ss_pred             EEEcCCCc
Q 047496           77 HLNLELNR   84 (204)
Q Consensus        77 ~L~l~~~~   84 (204)
                      ++++++|.
T Consensus       220 ~lNlSwc~  227 (483)
T KOG4341|consen  220 YLNLSWCP  227 (483)
T ss_pred             HhhhccCc
Confidence            88888775

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.00079  Score=46.66  Aligned_cols=84  Identities=19%  Similarity=0.203  Sum_probs=55.7

Q ss_pred             CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccc-cCCCccEEEeeCCc-CCCCCCccccccc
Q 047496           97 SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLA-NCKKLRSLNLIGNP-LDGFLPSSIGNLS  174 (204)
Q Consensus        97 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~~~  174 (204)
                      ..++.++.+++.+....-+.+..++.++.|.+..|.-.+.-+    ++-+. -.++|+.|++++|. |++.....+..++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence            447778888888776666777778888888887775433311    11121 34678888888874 7766666666776


Q ss_pred             cCccEEEeecc
Q 047496          175 MSLETLLITNC  185 (204)
Q Consensus       175 ~~L~~L~l~~n  185 (204)
                       +|+.|.+.+=
T Consensus       177 -nLr~L~l~~l  186 (221)
T KOG3864|consen  177 -NLRRLHLYDL  186 (221)
T ss_pred             -hhHHHHhcCc
Confidence             7777766654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.20  E-value=0.00013  Score=58.17  Aligned_cols=62  Identities=21%  Similarity=0.184  Sum_probs=25.8

Q ss_pred             CCccceeeecCCc-ceeecCCccCCCCCCccEEEcCCCc-CccC-CCccccCCCCCCEEeccCCc
Q 047496           47 MSTLKIIILINNS-LFGSLPSRIGLSLPTVEHLNLELNR-FSGT-IPSSITNASKLTLLKLGGNT  108 (204)
Q Consensus        47 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~l~l~~~~  108 (204)
                      +++|+.++++.+. +++..-..+...+++|+.|.+..|. ++.. +......+++|++|++++|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3455555555554 3222222222234555555544444 2211 11222334455555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.70  E-value=0.0043  Score=47.79  Aligned_cols=136  Identities=21%  Similarity=0.221  Sum_probs=80.0

Q ss_pred             CCCCCcEEEccCccc-cccCCccc-cCCCccceeeecCCcc-eeecCCccCCCCCCccEEEcCCCcCcc--CCCccccCC
Q 047496           22 NLRNLEALALGMNNL-VGVVSAPI-FNMSTLKIIILINNSL-FGSLPSRIGLSLPTVEHLNLELNRFSG--TIPSSITNA   96 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~   96 (204)
                      .+..|+.+..+++.. +...-..+ .+.++|+++.+.+++- ++.-...+...++.|+.+++..+....  ++...-..+
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            466778888877643 22222222 2567888888888762 222223344567778888887776432  233333466


Q ss_pred             CCCCEEeccCCccc-ccccccc----cCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           97 SKLTLLKLGGNTFS-GLIPDTI----GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        97 ~~L~~l~l~~~~~~-~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +.++.+.++.|... +.....+    ..+..++.+.+.++......    .+.-+..+++|+.+++-++.
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA----TLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH----HHHHHhhCcccceeeeechh
Confidence            77888888876543 2211112    23556777777777665442    33556677788888877775

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.57  E-value=0.0052  Score=27.11  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=14.0

Q ss_pred             CccEEEeeccccccccchhhh
Q 047496          176 SLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      +|++|++++|.|++....+++
T Consensus         3 ~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    3 NLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             T-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCEEEccCCcCCHHHHHHhC
Confidence            678888888888777666654

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.0018  Score=44.90  Aligned_cols=81  Identities=19%  Similarity=0.171  Sum_probs=43.4

Q ss_pred             CccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccc-cccccc-CCCCCcEEEccCcc-CCCCcccchhhhccccCC
Q 047496           74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIG-NLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCK  150 (204)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~-~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~  150 (204)
                      .++.++-+++.+....-+.+..++.++.|.+.+|.--+. ..+.++ -.++|+.|++++|. |++.     .+..+..++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHHHHHHhh
Confidence            366666666666555455556666666666666643211 111122 34667777777664 3332     124455556


Q ss_pred             CccEEEeeC
Q 047496          151 KLRSLNLIG  159 (204)
Q Consensus       151 ~L~~l~l~~  159 (204)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            666666544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.98  E-value=0.017  Score=23.20  Aligned_cols=11  Identities=55%  Similarity=0.785  Sum_probs=3.6

Q ss_pred             ccEEEeeCCcC
Q 047496          152 LRSLNLIGNPL  162 (204)
Q Consensus       152 L~~l~l~~n~~  162 (204)
                      |+.|++++|.+
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.76  E-value=0.011  Score=47.07  Aligned_cols=111  Identities=15%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             CCCCcEEEccCcccccc--CCccccCCCccceeeecCC-cceeecC---CccCCCCCCccEEEcCCCc-CccCCCcccc-
Q 047496           23 LRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINN-SLFGSLP---SRIGLSLPTVEHLNLELNR-FSGTIPSSIT-   94 (204)
Q Consensus        23 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-   94 (204)
                      ++.|+.+.+..+.-...  ........++|+.|+++++ ......+   ......+++|+.+++.++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566665555522211  1122234556666666552 1110111   1122244556666666555 3322222222 


Q ss_pred             CCCCCCEEeccCCc-ccccccc-cccCCCCCcEEEccCccC
Q 047496           95 NASKLTLLKLGGNT-FSGLIPD-TIGNLRNLEWLGLAYNNL  133 (204)
Q Consensus        95 ~~~~L~~l~l~~~~-~~~~~~~-~l~~l~~L~~L~l~~~~~  133 (204)
                      .+++|++|.+.+|. +++..-. ....++.|++|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25566666655555 3322222 223455566666665544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.66  E-value=0.00015  Score=57.62  Aligned_cols=184  Identities=22%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             ceEEccCCcccccc----ChhccCCCCCcEEEccCccccccCCc----cccCC-CccceeeecCCcceee----cCCccC
Q 047496            3 KGIYLGYNKLHGEI----PHEIANLRNLEALALGMNNLVGVVSA----PIFNM-STLKIIILINNSLFGS----LPSRIG   69 (204)
Q Consensus         3 ~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~~~~   69 (204)
                      ..+.+.+|.+....    ...+..++.|..|++++|++.+....    .+... +.++.|++..|.+++.    +.+.+.
T Consensus        90 ~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~  169 (478)
T KOG4308|consen   90 LHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLE  169 (478)
T ss_pred             HHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHh
Confidence            34455555554322    22334556666666666666533211    11122 4455555555555422    223333


Q ss_pred             CCCCCccEEEcCCCcCcc----CCCccc----cCCCCCCEEeccCCccccc----ccccccCCCC-CcEEEccCccCCCC
Q 047496           70 LSLPTVEHLNLELNRFSG----TIPSSI----TNASKLTLLKLGGNTFSGL----IPDTIGNLRN-LEWLGLAYNNLTSS  136 (204)
Q Consensus        70 ~~~~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~  136 (204)
                       ....++++++..|.+..    ..+..+    ....+++++.+.+|.++..    ....+...+. +.++++..|.+.+.
T Consensus       170 -~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  170 -KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             -cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence             24555555555555420    111222    2344556666666655421    1122333333 44466666655433


Q ss_pred             cccchhhhccccC-CCccEEEeeCCcCCCCCCccc----cccccCccEEEeecccccc
Q 047496          137 TSKLSFLSSLANC-KKLRSLNLIGNPLDGFLPSSI----GNLSMSLETLLITNCSISG  189 (204)
Q Consensus       137 ~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~  189 (204)
                      ... ...+.+... ..+++++++.|.+++.....+    .... .++.+.+..|.+..
T Consensus       249 g~~-~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVE-KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTD  304 (478)
T ss_pred             HHH-HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhcccCcccc
Confidence            110 112233333 455666666666654433332    2223 56666666665553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.81  E-value=0.046  Score=24.47  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=11.7

Q ss_pred             CccEEEeeccccccccchhh
Q 047496          176 SLETLLITNCSISGNIPQAI  195 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~~~~  195 (204)
                      +|++|++++|+++...++.|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            56667777776664433433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.81  E-value=0.046  Score=24.47  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=11.7

Q ss_pred             CccEEEeeccccccccchhh
Q 047496          176 SLETLLITNCSISGNIPQAI  195 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~~~~  195 (204)
                      +|++|++++|+++...++.|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            56667777776664433433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=92.48  E-value=0.073  Score=24.42  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=13.0

Q ss_pred             CccEEEeeccccccccchhhh
Q 047496          176 SLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      +|++|++++|.+......+++
T Consensus         3 ~L~~LdL~~N~i~~~G~~~L~   23 (28)
T smart00368        3 SLRELDLSNNKLGDEGARALA   23 (28)
T ss_pred             ccCEEECCCCCCCHHHHHHHH
Confidence            567777777777655444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.93  E-value=0.001  Score=52.95  Aligned_cols=162  Identities=23%  Similarity=0.249  Sum_probs=104.8

Q ss_pred             cceEEccCCccccccChhcc----CC-CCCcEEEccCccccccC----CccccCCCccceeeecCCcceee----cCCcc
Q 047496            2 LKGIYLGYNKLHGEIPHEIA----NL-RNLEALALGMNNLVGVV----SAPIFNMSTLKIIILINNSLFGS----LPSRI   68 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~   68 (204)
                      |..|++++|.+.+.....++    .. +.+++|++..|.++...    ...+.....++.++++.|.+...    ++..+
T Consensus       117 L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l  196 (478)
T KOG4308|consen  117 LGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQAL  196 (478)
T ss_pred             HhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhh
Confidence            56788888887743333222    22 45777888888887653    33345577889999998876411    12222


Q ss_pred             C---CCCCCccEEEcCCCcCccCCC----ccccCCCC-CCEEeccCCcccccc----cccccCC-CCCcEEEccCccCCC
Q 047496           69 G---LSLPTVEHLNLELNRFSGTIP----SSITNASK-LTLLKLGGNTFSGLI----PDTIGNL-RNLEWLGLAYNNLTS  135 (204)
Q Consensus        69 ~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~l~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~  135 (204)
                      .   ....++++|.+.+|.++....    ..+...+. +..+++..|.+.+..    ...+..+ +.++.++++.|.+..
T Consensus       197 ~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  197 ESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             hhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            2   146678999999988763221    22334444 666888888776442    2334445 678899999998877


Q ss_pred             CcccchhhhccccCCCccEEEeeCCcCCC
Q 047496          136 STSKLSFLSSLANCKKLRSLNLIGNPLDG  164 (204)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  164 (204)
                      .... .....+..++.++++.++.|.+.+
T Consensus       277 ~~~~-~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  277 KGVR-DLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cchH-HHHHHHhhhHHHHHhhcccCcccc
Confidence            6432 244567778889999999998865

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.63  E-value=0.0041  Score=44.39  Aligned_cols=90  Identities=14%  Similarity=0.082  Sum_probs=59.7

Q ss_pred             ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc
Q 047496           91 SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI  170 (204)
Q Consensus        91 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  170 (204)
                      ..+...+..+.|+++.+... .....++.+..+..++++.|++...|      ..++....++.++.-.|..+ ..|..+
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~------~d~~q~~e~~~~~~~~n~~~-~~p~s~  107 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLP------KDAKQQRETVNAASHKNNHS-QQPKSQ  107 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhCh------hhHHHHHHHHHHHhhccchh-hCCccc
Confidence            34556666777777777665 33344666677777788877776665      34555555666666666666 667777


Q ss_pred             cccccCccEEEeecccccc
Q 047496          171 GNLSMSLETLLITNCSISG  189 (204)
Q Consensus       171 ~~~~~~L~~L~l~~n~~~~  189 (204)
                      ...+ ++++++.-.+.++.
T Consensus       108 ~k~~-~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  108 KKEP-HPKKNEQKKTEFFR  125 (326)
T ss_pred             cccC-CcchhhhccCcchH
Confidence            7776 77887777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.23  E-value=0.017  Score=41.34  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=47.9

Q ss_pred             CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC
Q 047496           71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK  150 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  150 (204)
                      .+.....||++.++.- .+-..++.++.+..++++.+.+. ..|..++....+..+++..|.+...|      ...+..+
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p------~s~~k~~  111 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQP------KSQKKEP  111 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCC------ccccccC
Confidence            3455555565555544 33444555555555666655554 44555555555556666666665555      4555666


Q ss_pred             CccEEEeeCCcCC
Q 047496          151 KLRSLNLIGNPLD  163 (204)
Q Consensus       151 ~L~~l~l~~n~~~  163 (204)
                      +++++++.++.+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            6666666666543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.94  E-value=1.1  Score=20.08  Aligned_cols=14  Identities=43%  Similarity=0.572  Sum_probs=8.2

Q ss_pred             CCCcEEEccCcccc
Q 047496           24 RNLEALALGMNNLV   37 (204)
Q Consensus        24 ~~L~~L~l~~~~~~   37 (204)
                      .+|+.|++++|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            35566666666554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.23  E-value=1.2  Score=20.02  Aligned_cols=16  Identities=38%  Similarity=0.395  Sum_probs=10.2

Q ss_pred             CCcEEEccCccCCCCc
Q 047496          122 NLEWLGLAYNNLTSST  137 (204)
Q Consensus       122 ~L~~L~l~~~~~~~~~  137 (204)
                      +|+.|++++|+++..|
T Consensus         3 ~L~~L~vs~N~Lt~LP   18 (26)
T smart00364        3 SLKELNVSNNQLTSLP   18 (26)
T ss_pred             ccceeecCCCccccCc
Confidence            4666666666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-13
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-10
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-13
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  ++L +N L G IP  + +L  L  L L +N L G +   +  + TL+ +IL  N L 
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 62  GSLPSRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
           G +PS  GLS  T +  ++L  NR +G IP  I     L +LKL  N+FSG IP  +G+ 
Sbjct: 480 GEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 121 RNLEWLGLAYN 131
           R+L WL L  N
Sbjct: 538 RSLIWLDLNTN 548

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 2   LKGIYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + L  NK  GEIP  ++     L  L L  N+  G V     + S L+ + L +N+ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITN-ASKLTLLKLGGNTFSG-LIPDTIG 118
            G LP    L +  ++ L+L  N FSG +P S+TN ++ L  L L  N FSG ++P+   
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 119 NLRN-LEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
           N +N L+ L L  N               +NC +L SL+L  N L G +PSS+G+LS   
Sbjct: 391 NPKNTLQELYLQNNG-----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 178 ETLLITNCSISGNIPQAI 195
           +  L  N  + G IPQ +
Sbjct: 446 DLKLWLNM-LEGEIPQEL 462

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  ++L +N L G IP  + +L  L  L L +N L G +   +  + TL+ +IL  N L 
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 62  GSLPSRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
           G +PS  GLS  T +  ++L  NR +G IP  I     L +LKL  N+FSG IP  +G+ 
Sbjct: 477 GEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 121 RNLEWLGLAYN 131
           R+L WL L  N
Sbjct: 535 RSLIWLDLNTN 545

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 2   LKGIYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + L  NK  GEIP  ++     L  L L  N+  G V     + S L+ + L +N+ 
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITN-ASKLTLLKLGGNTFSG-LIPDTIG 118
            G LP    L +  ++ L+L  N FSG +P S+TN ++ L  L L  N FSG ++P+   
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 119 NLRN-LEWLGLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
           N +N L+ L L  N               +NC +L SL+L  N L G +PSS+G+LS   
Sbjct: 388 NPKNTLQELYLQNNG-----FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 178 ETLLITNCSISGNIPQAI 195
           +  L  N  + G IPQ +
Sbjct: 443 DLKLWLNM-LEGEIPQEL 459

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 8   GYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR 67
           G N L G IP  IA L  L  L +   N+ G +   +  + TL  +    N+L G+LP  
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 68  IGLSLPTVEHLNLELNRFSGTIPSSITNASKL-TLLKLGGNTFSGLIPDTIGNLRNLEWL 126
           I  SLP +  +  + NR SG IP S  + SKL T + +  N  +G IP T  NL NL ++
Sbjct: 145 IS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202
Query: 127 GLAYNNXXXXXXXXXXXXXXANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186
            L+ N                + K  + ++L  N L  F    +G LS +L  L + N  
Sbjct: 203 DLSRN-----MLEGDASVLFGSDKNTQKIHLAKNSL-AFDLGKVG-LSKNLNGLDLRNNR 255
Query: 187 ISGNIPQAIS 196
           I G +PQ ++
Sbjct: 256 IYGTLPQGLT 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (349), Expect = 4e-38
 Identities = 67/219 (30%), Positives = 98/219 (44%), Gaps = 23/219 (10%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAP-IFNMSTLKIIILINNS 59
            L G+ L  N  +G +P    +   LE+LAL  NN  G +    +  M  LK++ L  N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK--LTLLKLGGNTFSGLIPDTI 117
             G LP  +     ++  L+L  N FSG I  ++    K  L  L L  N F+G IP T+
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 118 GNLRNLEWLGLAYNNLT-------SSTSKLSFL------------SSLANCKKLRSLNLI 158
            N   L  L L++N L+        S SKL  L              L   K L +L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 159 GNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIST 197
            N L G +PS + N + +L  + ++N  ++G IP+ I  
Sbjct: 475 FNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGR 512

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 7e-38
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 10/198 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +  NKL G+    I+    L+ L +  N  VG +  P   + +L+ + L  N   
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFT 282

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNL 120
           G +P  +  +  T+  L+L  N F G +P    + S L  L L  N FSG +P DT+  +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCK-KLRSLNLIGNPLDGFLPSSIGNLSM-SLE 178
           R L+ L L++N  +          SL N    L +L+L  N   G +  ++      +L+
Sbjct: 343 RGLKVLDLSFNEFSG-----ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 179 TLLITNCSISGNIPQAIS 196
            L + N   +G IP  +S
Sbjct: 398 ELYLQNNGFTGKIPPTLS 415

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (344), Expect = 2e-37
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 9/200 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +  N     IP  + +   L+ L +  N L G  S  I   + LK++ + +N   
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSIT-NASKLTLLKLGGNTFSGLIPDTIGNL 120
           G +P    L L ++++L+L  N+F+G IP  ++     LT L L GN F G +P   G+ 
Sbjct: 261 GPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
             LE L L+ NN +          +L   + L+ L+L  N   G LP S+ NLS SL TL
Sbjct: 318 SLLESLALSSNNFSGELPM----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 181 LITNCSISGNIPQAISTKYL 200
            +++ + SG I   +     
Sbjct: 374 DLSSNNFSGPILPNLCQNPK 393

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (337), Expect = 2e-36
 Identities = 58/197 (29%), Positives = 82/197 (41%), Gaps = 9/197 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIAN--LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L  + L  N   G I   +       L+ L L  N   G +   + N S L  + L  N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           L G++PS +G SL  +  L L LN   G IP  +     L  L L  N  +G IP  + N
Sbjct: 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
             NL W+ L+ N LT           +   + L  L L  N   G +P+ +G+   SL  
Sbjct: 489 CTNLNWISLSNNRLTG-----EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIW 542

Query: 180 LLITNCSISGNIPQAIS 196
           L +     +G IP A+ 
Sbjct: 543 LDLNTNLFNGTIPAAMF 559

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (321), Expect = 3e-34
 Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 19/214 (8%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
            L  ++L +N L G IP  + +L  L  L L +N L G +   +  + TL+ +IL  N L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            G +PS +  +   +  ++L  NR +G IP  I     L +LKL  N+FSG IP  +G+ 
Sbjct: 479 TGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 121 RNLEWLGLAYNNLT----SSTSKLSFL-----------SSLANCKKLRSLNLIGNP--LD 163
           R+L WL L  N       ++  K S               + N    +  +  GN     
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597

Query: 164 GFLPSSIGNLSMSLETLLITNCSISGNIPQAIST 197
           G     +  LS +     IT+    G+       
Sbjct: 598 GIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDN 630

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (317), Expect = 1e-33
 Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 19/212 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAP--IFNMSTLKIIILINNS 59
           L+ ++L  + ++G +        +L +L L  N+L G V+    + + S LK + + +N+
Sbjct: 79  LESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSIT---NASKLTLLKLGGNTFSGLIPDT 116
           L        GL L ++E L+L  N  SG             +L  L + GN  SG +   
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-- 195

Query: 117 IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           +    NLE+L ++ NN ++       +  L +C  L+ L++ GN L G    +I   +  
Sbjct: 196 VSRCVNLEFLDVSSNNFSTG------IPFLGDCSALQHLDISGNKLSGDFSRAISTCT-E 248

Query: 177 LETLLITNCSISGNIPQAISTK----YLFQNN 204
           L+ L I++    G IP           L +N 
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (281), Expect = 6e-29
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 27/216 (12%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  I L  N+L GEIP  I  L NL  L L  N+  G + A + +  +L  + L  N   
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 62  GSLPSRIG---------------------LSLPTVEHLNLELNRFSGTIPSSITNASKLT 100
           G++P+ +                        +    H    L  F G     +   S   
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 101 LLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160
              +    + G    T  N  ++ +L ++YN L+           + +   L  LNL  N
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHN 666

Query: 161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
            + G +P  +G+L   L  L +++  + G IPQA+S
Sbjct: 667 DISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMS 701

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 2e-25
 Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 29/214 (13%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTL----------- 50
           L  + L  N   G IP E+ + R+L  L L  N   G + A +F  S             
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575

Query: 51  -----------KIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL 99
                                 G    ++   L T    N+    + G    +  N   +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159
             L +  N  SG IP  IG++  L  L L +N+++ S         + + + L  L+L  
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-----IPDEVGDLRGLNILDLSS 689

Query: 160 NPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQ 193
           N LDG +P ++  L+  L  + ++N ++SG IP+
Sbjct: 690 NKLDGRIPQAMSALT-MLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 1e-22
 Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 8/165 (4%)

Query: 7   LGYNKLHGEIPHEIANLRNLEALALGMN--NLVGVVSAPIFNMSTLKIIILINNSLFGSL 64
           +  N + G+    I N    +      N     G+ S  +  +ST     + +    G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
                 +  ++  L++  N  SG IP  I +   L +L LG N  SG IPD +G+LR L 
Sbjct: 625 SPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683

Query: 125 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS 169
            L L+ N L           +++    L  ++L  N L G +P  
Sbjct: 684 ILDLSSNKLDG-----RIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)

Query: 79  NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138
           +  LN     + SS+ + + L  L L  +  +G +        +L  L L+ N+L+    
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGP-- 115

Query: 139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
            ++ L+SL +C  L+ LN+  N LD     S G    SLE L ++  SISG       
Sbjct: 116 -VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 9e-11
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 25/115 (21%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  + + YN L G IP EI ++  L  L                N+         +N + 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFIL----------------NLG--------HNDIS 669

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDT 116
           GS+P  +G  L  +  L+L  N+  G IP +++  + LT + L  N  SG IP+ 
Sbjct: 670 GSIPDEVG-DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 24/66 (36%), Positives = 35/66 (53%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
            L  + LG+N + G IP E+ +LR L  L L  N L G +   +  ++ L  I L NN+L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 61  FGSLPS 66
            G +P 
Sbjct: 717 SGPIPE 722

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (325), Expect = 1e-36
 Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  +Y+ +  + G IP  ++ ++ L  L    N L G +   I ++  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G++P   G        + +  NR +G IP +  N + L  + L  N   G      G+ +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           N + + LA N+L         L  +   K L  L+L  N + G LP  +  L   L +L 
Sbjct: 222 NTQKIHLAKNSLAFD------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLN 274

Query: 182 ITNCSISGNIPQ 193
           ++  ++ G IPQ
Sbjct: 275 VSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 1e-35
 Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 8   GYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR 67
           G N L G IP  IA L  L  L +   N+ G +   +  + TL  +    N+L G+LP  
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 68  IGLSLPTVEHLNLELNRFSGTIPSSITNASKL-TLLKLGGNTFSGLIPDTIGNLRNLEWL 126
           I  SLP +  +  + NR SG IP S  + SKL T + +  N  +G IP T  NL NL ++
Sbjct: 145 IS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202

Query: 127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186
            L+ N L    S         + K  + ++L  N L   L   +G    +L  L + N  
Sbjct: 203 DLSRNMLEGDAS-----VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK-NLNGLDLRNNR 255

Query: 187 ISGNIPQAIS 196
           I G +PQ ++
Sbjct: 256 IYGTLPQGLT 265

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  119 bits (302), Expect = 3e-33
 Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 10  NKLHGEIPHEIANLRNLEALALGMNNLVGVVSAP--IFNMSTLKIIILIN-NSLFGSLPS 66
               G +         +  L L   NL      P  + N+  L  + +   N+L G +P 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 67  RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
            I   L  + +L +     SG IP  ++    L  L    N  SG +P +I +L NL  +
Sbjct: 96  AIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 127 GLAYNNLTSSTSKLSFLSSLANCKKL-RSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185
               N ++ +        S  +  KL  S+ +  N L G +P +  NL  +L  + ++  
Sbjct: 155 TFDGNRISGAIP-----DSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRN 207

Query: 186 SISGNIPQAIS 196
            + G+      
Sbjct: 208 MLEGDASVLFG 218

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.6 bits (231), Expect = 5e-23
 Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           +   + +  N+L G+IP   ANL NL  + L  N L G  S    +    + I L  NSL
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              L   +G     +  L+L  NR  GT+P  +T    L  L +  N   G IP   GNL
Sbjct: 234 AFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 121 RNLEWLGLAYNN 132
           +  +    A N 
Sbjct: 291 QRFDVSAYANNK 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (253), Expect = 4e-25
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 5/195 (2%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  + L +N+L             L +L +G N +  +       +  LK++ L +N L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL- 85

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             L  +       +  L+L  N       +       L  L L  N  S     T   L 
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           NL+ L L+ N + +  S+      +     L+ L L  N +  F P     +   L  L 
Sbjct: 146 NLQELLLSNNKIQALKSE---ELDIFANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLF 201

Query: 182 ITNCSISGNIPQAIS 196
           + N  +  ++ + + 
Sbjct: 202 LNNVQLGPSLTEKLC 216

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 1e-23
 Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 6/198 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK + L +N+L        A   NL  L L  N++  + + P      L  + L +N L 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNA--SKLTLLKLGGNTFSGLIPDTIGN 119
            +        L  ++ L L  N+        +     S L  L+L  N      P     
Sbjct: 135 STKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS-MSLE 178
           +  L  L L    L  S ++   L        +R+L+L  + L     ++   L   +L 
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 179 TLLITNCSISGNIPQAIS 196
            L ++  +++     + +
Sbjct: 252 MLDLSYNNLNVVGNDSFA 269

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 95.5 bits (238), Expect = 4e-23
 Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 8/201 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
           L  + L  NK+        + L +LE L LG+N +   ++   +  +  +  I L  N  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSG--TIPSSITNASKLTLLKLGGNTFSGLIPDTIG 118
                +     +P+++ L L         + PS       LT+L L  N  + +  D + 
Sbjct: 443 LQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 119 NLRNLEWLGLAYNNLTS---STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM 175
            L  LE L L +NNL       +    +  L     L  LNL  N  D        +L  
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF- 560

Query: 176 SLETLLITNCSISGNIPQAIS 196
            L+ + +   +++       +
Sbjct: 561 ELKIIDLGLNNLNTLPASVFN 581

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.1 bits (232), Expect = 3e-22
 Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 9/211 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF---NMSTLKIIILINN 58
           LK + L  N++    P     +  L  L L    L   ++  +      ++++ + L N+
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 59  SLFGSLPSRI-GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI 117
            L  +  +   GL    +  L+L  N  +     S     +L    L  N    L   ++
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSF----LSSLANCKKLRSLNLIGNPLDGFLPSSIGNL 173
             L N+ +L L  +    S S  S       S    K L  LN+  N + G   +    L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352

Query: 174 SMSLETLLITNCSISGNIPQAISTKYLFQNN 204
             +L+ L ++N   S       +   L  + 
Sbjct: 353 I-NLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 7e-21
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 10/196 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            +     + KL  ++P ++    N+  L L  N L  + +A     S L  + +  N++ 
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI- 61

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             L   +   LP ++ LNL+ N  S     +    + LT L L  N+   +  +     +
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS-MSLETL 180
           NL  L L++N L+S+      L +    + L+ L L  N +       +   +  SL+ L
Sbjct: 122 NLITLDLSHNGLSSTK-----LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 181 LITNCSISGNIPQAIS 196
            +++  I    P    
Sbjct: 177 ELSSNQIKEFSPGCFH 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.0 bits (216), Expect = 3e-20
 Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 16/201 (7%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAP--IFNMSTLKIIILINNS 59
           +  IYL YNK      +  A + +L+ L L    L  V S+P     +  L I+ L NN+
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFS--------GTIPSSITNASKLTLLKLGGNTFSG 111
           +       +   L  +E L+L+ N  +        G     +   S L +L L  N F  
Sbjct: 492 IANINDDMLE-GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 112 LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG 171
           +  +   +L  L+ + L  NNL +  +     S   N   L+SLNL  N +        G
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPA-----SVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 172 NLSMSLETLLITNCSISGNIP 192
               +L  L +          
Sbjct: 606 PAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 19/202 (9%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALG---------MNNLVGVVSAPIFNMSTLK 51
            L+  +L YN +     H +  L N+  L L          + +L  +       +  L+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 52  IIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSIT----NASKLTLLKLGGN 107
            + + +N + G + S +   L  +++L+L  +  S    ++ T      S L +L L  N
Sbjct: 333 HLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 108 TFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLP 167
             S +  D    L +LE L L  N +    +   +       + +  + L  N       
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW----RGLENIFEIYLSYNKYLQLTR 447

Query: 168 SSIGNLSMSLETLLITNCSISG 189
           +S   +  SL+ L++   ++  
Sbjct: 448 NSFALVP-SLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 40/209 (19%), Positives = 65/209 (31%), Gaps = 20/209 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIA----NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILIN 57
           LK + L  +                   L  L L  N +  + S     +  L+++ L  
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 58  NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL--IPD 115
           N +   L  +    L  +  + L  N++     +S      L  L L       +   P 
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 116 TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL--------DGFLP 167
               LRNL  L L+ NN+ +          L   +KL  L+L  N L         G   
Sbjct: 475 PFQPLRNLTILDLSNNNIANIND-----DMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 168 SSIGNLSMSLETLLITNCSISGNIPQAIS 196
             +  LS  L  L + +        +   
Sbjct: 530 YFLKGLS-HLHILNLESNGFDEIPVEVFK 557

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 4e-17
 Identities = 46/176 (26%), Positives = 68/176 (38%), Gaps = 13/176 (7%)

Query: 2   LKGIYLGYNKLHG--EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L+ + L    L      P     LRNL  L L  NN+  +    +  +  L+I+ L +N+
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 60  L-------FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL 112
           L           P      L  +  LNLE N F         +  +L ++ LG N  + L
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 113 IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS 168
                 N  +L+ L L  N +T S  K  F  +  N   L  L++  NP D    S
Sbjct: 576 PASVFNNQVSLKSLNLQKNLIT-SVEKKVFGPAFRN---LTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 9e-17
 Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 10/148 (6%)

Query: 49  TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT 108
           + ++    +  L   +P  +      +  LNL  N+      ++ T  S+LT L +G NT
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 109 FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS 168
            S L P+    L  L+ L L +N L+  +       + A C  L  L+L+ N +     +
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSD-----KTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 169 SIGNLSMSLETLLITNCSISGNIPQAIS 196
                  +L TL +++  +S        
Sbjct: 116 PFVKQK-NLITLDLSHNGLSSTKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 13/196 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL--------VGVVSAPIFNMSTLKII 53
           L  + L  N +       +  L  LE L L  NNL         G     +  +S L I+
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 54  ILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI 113
            L +N     +P  +   L  ++ ++L LN  +    S   N   L  L L  N  + + 
Sbjct: 542 NLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 114 PDTIG-NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN 172
               G   RNL  L + +N    +   +++  +  N        L  + L    P   G 
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG- 659

Query: 173 LSMSLETLLITNCSIS 188
               +     ++C  S
Sbjct: 660 --FPVRLFDTSSCKDS 673

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 5e-23
 Identities = 28/195 (14%), Positives = 61/195 (31%), Gaps = 12/195 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L    +  +     I            +    NN+  V S  +  ++ L+   + N+   
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFV 219

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
                          + N E  +   T      N   LT +++        +P  +  L 
Sbjct: 220 AENICEAWE------NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 122 NLEWLGLAYNNLTS---STSKLSFLSSLANCKKLRSLNLIGNPL-DGFLPSSIGNLSMSL 177
            ++ + +A N   S          L+     +K++ + +  N L    + +S+  +   L
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KL 332

Query: 178 ETLLITNCSISGNIP 192
             L      + G +P
Sbjct: 333 GMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 4e-21
 Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 17/200 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF----NMSTLKIIILIN 57
           + G+ L      G +P  I  L  LE LALG +                  + +    + 
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 58  NSLFGSLPSRIG-LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDT 116
                +            +    +  +    +I  S     K T +    N  +  +   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 117 IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           +  L  L    +  +   +             C+   + N               NL   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAE----------NICEAWENENSEYAQQYKTEDLKWDNLK-D 250

Query: 177 LETLLITNCSISGNIPQAIS 196
           L  + + NC     +P  + 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLK 270

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.6 bits (215), Expect = 4e-20
 Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 23/208 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+  Y+G +    E   E     N E                  N+  L  + + N    
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262

Query: 62  GSLPSRIGLSLPTVEHLNLELNRF--------SGTIPSSITNASKLTLLKLGGNTFSGL- 112
             LP+ +  +LP ++ +N+  NR              +      K+ ++ +G N      
Sbjct: 263 TKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 113 IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN 172
           +  ++  ++ L  L   YN L         L +  +  KL SLNL  N +   +P++   
Sbjct: 322 VETSLQKMKKLGMLECLYNQLE------GKLPAFGSEIKLASLNLAYNQITE-IPANFCG 374

Query: 173 LSMSLETLLITNCSISGNIPQAISTKYL 200
            +  +E L   +  +   IP     K +
Sbjct: 375 FTEQVENLSFAHNKLKY-IPNIFDAKSV 401

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.6 bits (215), Expect = 4e-20
 Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 15/206 (7%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  +   YN+L G++P    +   L +L L  N +  + +        ++ +   +N L 
Sbjct: 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL- 389

Query: 62  GSLPSRIGL-SLPTVEHLNLELNRFSG-------TIPSSITNASKLTLLKLGGNTFSGLI 113
             +P+     S+  +  ++   N            +  +      ++ + L  N  S   
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 114 PDTIGNLRNLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG 171
            +       L  + L  N LT     S      +  N   L S++L  N L   L     
Sbjct: 450 KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFR 508

Query: 172 NLSM-SLETLLITNCSISGNIPQAIS 196
             ++  L  + ++  S S   P    
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPL 533

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 8e-19
 Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 22/196 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-------VSAPIFNMSTLKIII 54
           +  I L  N++        +    L ++ L  N L  +        +    N   L  I 
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 55  LINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG------GNT 108
           L  N L          +LP +  ++L  N FS   P+   N+S L    +       GN 
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 109 FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS 168
                P+ I    +L  L +  N++     K+           +  L++  NP      S
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--------TPNISVLDIKDNPNISIDLS 605

Query: 169 SIGNLSMSLETLLITN 184
            +     +   +L  +
Sbjct: 606 YVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 19/213 (8%)

Query: 2   LKGIYLGYNKLHG-EIPHEIANLRNLEALALGMNNLVGVVS-------APIFNMSTLKII 53
           ++ +   +NKL       +  ++  + A+    N +  V            F    +  I
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 54  ILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSG-------TIPSSITNASKLTLLKLGG 106
            L NN +    P  +  +   +  +NL  N  +            +  N   LT + L  
Sbjct: 439 NLSNNQI-SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 107 NTFSGLIPD-TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF 165
           N  + L  D     L  L  + L+YN+ +   ++    S+L         +  GN     
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 166 LPSSIGNLSMSLETLLITNCSISGNIPQAISTK 198
            P  I     SL  L I +  I   + + I+  
Sbjct: 558 WPEGITLCP-SLTQLQIGSNDIRK-VNEKITPN 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 34/174 (19%), Positives = 52/174 (29%), Gaps = 22/174 (12%)

Query: 2   LKGIYLGYNKLHG-------EIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKII 53
           L  I L  N L         +      N   L ++ L  N L  +        +  L  I
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 54  ILINNSLFGSLPSRIGL-----SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT 108
            L  NS     P++                + + NR     P  IT    LT L++G N 
Sbjct: 519 DLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 109 FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
               + + I    N+  L +  N   S       LS +    +     L  +  
Sbjct: 578 IRK-VNEKI--TPNISVLDIKDNPNISID-----LSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 79  NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138
           N EL+ +      S+ +  ++T L L G   SG +PD IG L  LE L L  +    +  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS-LETLLITNCSISGNIPQAIS 196
            L     ++          +                 S L    I +     +I ++  
Sbjct: 123 -LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 14/143 (9%)

Query: 1   MLKGIYLGYNKLHGEIPHEIA--NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILIN- 57
           +L  I L +NKL   +  +     L  L  + L  N+     +    N STLK   + N 
Sbjct: 489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQ 546

Query: 58  -----NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL 112
                N      P  I    P++  L +  N     +   IT    +++L +  N    +
Sbjct: 547 RDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602

Query: 113 IPDTIGNLRNLEWLGLAYNNLTS 135
               +          L Y+    
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQD 625

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 10/199 (5%)

Query: 1   MLKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINN 58
            L+ + L  N L   G          +L+ L L  N ++ + S+    +  L+ +   ++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHS 406

Query: 59  SLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI-PDTI 117
           +L       + LSL  + +L++                S L +LK+ GN+F     PD  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
             LRNL +L L+   L   +      ++  +   L+ LN+  N            L+ SL
Sbjct: 467 TELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SL 520

Query: 178 ETLLITNCSISGNIPQAIS 196
           + L  +   I  +  Q + 
Sbjct: 521 QVLDYSLNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 5/164 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ +   ++ L       +  +LRNL  L +   +     +     +S+L+++ +  NS 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             +    I   L  +  L+L   +     P++  + S L +L +  N F  L       L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG 164
            +L+ L  + N++   TSK   L        L  LNL  N    
Sbjct: 518 NSLQVLDYSLNHIM--TSKKQELQHF--PSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 10/189 (5%)

Query: 15  EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
           +IP  +    + + L L  N L  + S   F+   L+++ L    +          SL  
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSH 77

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134
           +  L L  N        + +  S L  L       + L    IG+L+ L+ L +A+N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG---NLSMSLETLLITNCSISGNI 191
           S           +N   L  L+L  N +     + +     + +   +L ++   ++   
Sbjct: 138 S----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 192 PQAISTKYL 200
           P A     L
Sbjct: 194 PGAFKEIRL 202

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 3e-18
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 12/207 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L   ++         +L +L  L L  N +  +       +S+L+ ++ +  +L 
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 62  GSLPSRIGLSLPTVEHLNLELNRF-SGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
                 IG  L T++ LN+  N   S  +P   +N + L  L L  N    +    +  L
Sbjct: 114 SLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 121 RNLE----WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
             +      L L+ N +                 +L  L L  N     +  +       
Sbjct: 173 HQMPLLNLSLDLSLNPMN------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 177 LETLLITNCSISGNIPQAISTKYLFQN 203
           LE   +               K   + 
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEG 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.1 bits (198), Expect = 7e-18
 Identities = 38/208 (18%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L  N +        + L +L+ L     NL  + + PI ++ TLK + + +N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL----LKLGGNTFSGLIPDTI 117
                    +L  +EHL+L  N+      + +    ++ L    L L  N  + + P   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF--LPSSIGNLSM 175
             +  L  L L  N  + +  K            L    L+         L     +   
Sbjct: 198 KEI-RLHKLTLRNNFDSLNVMKTCIQ----GLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 176 SLETLLITNCSISGNIPQAISTKYLFQN 203
            L  L I    ++           LF  
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 41/217 (18%), Positives = 73/217 (33%), Gaps = 29/217 (13%)

Query: 2   LKGIYLGYNKL-------------------HGEIPHEIANLRNLEALALGMNNL--VGVV 40
            + + L   K                     G       +L +LE L L  N L   G  
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 41  SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKL 99
           S   F  ++LK + L  N +     + +G  L  +EHL+ + +        S+  +   L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159
             L +               L +LE L +A N+   +             + L  L+L  
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQ 479

Query: 160 NPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
             L+   P++  +LS SL+ L +++ +          
Sbjct: 480 CQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYK 515

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 36/222 (16%), Positives = 63/222 (28%), Gaps = 35/222 (15%)

Query: 2   LKGIYLGYNKLHGEIPHE-IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIII------ 54
           L  + L  N     +    I  L  LE   L +       +   F+ S L+ +       
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 55  --LINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL 112
             L     +      +   L  V   +L           S         L+L    F   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQF 319

Query: 113 IPD-------------------TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR 153
                                 +  +L +LE+L L+ N L+          S      L+
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG---CCSQSDFGTTSLK 376

Query: 154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
            L+L  N +   + S+   L   LE L   + ++      ++
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLE-QLEHLDFQHSNLKQMSEFSV 416

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 33/219 (15%), Positives = 61/219 (27%), Gaps = 23/219 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           + G+ L      G +P  I  L  L+ L+ G ++             T  +     + + 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL------IPD 115
                        +   +L  +  +      +    K + + L       L      I  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 116 TIGNLRNLEWLGLAYNNLTSSTSKLSFL--------------SSLANCKKLRSLNLIGNP 161
            I  L  L+ +  A +  T     + +                S +N K L  + L   P
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL 200
               LP  + +L   L++L I                 L
Sbjct: 503 NMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRL 540

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.5 bits (201), Expect = 2e-18
 Identities = 42/236 (17%), Positives = 78/236 (33%), Gaps = 43/236 (18%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAP-IFNMSTLKIIILINNS 59
           L  + L YN++  EIP +  A    +E L    N L  + +     ++  +  +    N 
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 60  LFGSLPSRIGLSLPT-----VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-- 112
           + GS    I  S+          + L  N             S ++ + L  N  + +  
Sbjct: 656 I-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 113 -----IPDTIGNLRNLEWLGLAYNNLTS-----STSKLSFL--------------SSLAN 148
                      N   L  + L +N LTS       + L +L              +   N
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774

Query: 149 CKKLRSLNLI------GNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK 198
             +L++  +       GN +    P+ I     SL  L I +  I   + + ++ +
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDIR-KVDEKLTPQ 828

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 6e-18
 Identities = 28/198 (14%), Positives = 68/198 (34%), Gaps = 15/198 (7%)

Query: 2   LKGIYLGYNKLHG---------EIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLK 51
           L+ + +  N+             +  +      ++   +G NNL     SA +  M  L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 52  IIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSG 111
           ++  ++N +   L +  G +   +  L L+ N+             ++  L    N    
Sbjct: 577 LLDCVHNKV-RHLEA-FG-TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 112 LIPDT-IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI 170
           +       ++  +  +  +YN + S    +S            ++ L  N +  F     
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 171 GNLSMSLETLLITNCSIS 188
              S  + T++++N  ++
Sbjct: 694 ATGS-PISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 6e-16
 Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 13/194 (6%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALG-MNNLVGVVSAPIFNMSTLKIIILINNS 59
           +   +    N+     P +  +  +L+   +G + N +  +S  I  ++ L+II   N+ 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
                 +            N +  +       S +N   LT ++L        +PD + +
Sbjct: 460 FTYDNIAVDWEDA------NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLA----NCKKLRSLNLIGNPLDGFLPS-SIGNLS 174
           L  L+ L +A N   S+    +  + LA       K++   +  N L+ F  S S+  + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 175 MSLETLLITNCSIS 188
             L  L   +  + 
Sbjct: 574 -KLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 7e-15
 Identities = 30/187 (16%), Positives = 58/187 (31%), Gaps = 18/187 (9%)

Query: 2   LKGIYLGYNKLHGEIPH-----EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILI 56
           +  +   YNK+  E  +     +     N   + L  N +    +      S +  IIL 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 57  NNSL-------FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI--TNASKLTLLKLGGN 107
           NN +                 +   +  ++L  N+ + ++      T    L+ + +  N
Sbjct: 706 NNLMTSIPENSLKPKDGNYK-NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763

Query: 108 TFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL-SSLANCKKLRSLNLIGNPLDGFL 166
            FS   P    N   L+  G+ +         L    + +  C  L  L +  N +    
Sbjct: 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822

Query: 167 PSSIGNL 173
                 L
Sbjct: 823 EKLTPQL 829

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 29/174 (16%), Positives = 51/174 (29%), Gaps = 22/174 (12%)

Query: 2   LKGIYLGYNKL-------HGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKII 53
           +  I L  N +                N   L  + L  N L  +        +  L  +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758

Query: 54  ILINNSLFGSLPSRIG-----LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT 108
            +  N    S P++        +       + E NR     P+ IT    L  L++G N 
Sbjct: 759 DVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 109 FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
              +          L  L +A N   S       ++S+    +     L+ +  
Sbjct: 818 IRKVDEKL---TPQLYILDIADNPNISID-----VTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 24/115 (20%), Positives = 37/115 (32%)

Query: 78  LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137
            N EL+ +       + N  ++T L L G    G +PD IG L  L+ L    ++ T S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIP 192
                     +  + R   +  +    FL          L    I        I 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 14/145 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIA--NLRNLEALALGMNNLVGVVSAPIFNMSTLKII------ 53
           L  I L +NKL   +  +     L  L  + +  N      +    N S LK        
Sbjct: 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQR 787

Query: 54  ILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI 113
               N +    P+ I  + P++  L +  N     +   +T   +L +L +  N    + 
Sbjct: 788 DAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISID 843

Query: 114 PDTIGNLRNLEWLGLAYNNLTSSTS 138
             ++          L Y+       
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRG 868

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 9e-21
 Identities = 48/204 (23%), Positives = 74/204 (36%), Gaps = 20/204 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +    L  E+P  +     LE L L  N L   + A I +++ L+ + +      
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 62  GSLPSRIG--------LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI 113
             LP  +           L  ++ L LE      ++P+SI N   L  LK+  +  S L 
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL- 221

Query: 114 PDTIGNLRNLEWLGLAYNNLTSSTSKLSFL-SSLANCKKLRSLNLIGNPLDGFLPSSIGN 172
              I +L  LE L L           L            L+ L L        LP  I  
Sbjct: 222 GPAIHHLPKLEELDLRGCT------ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

Query: 173 LSMSLETLLITNCSISGNIPQAIS 196
           L+  LE L +  C     +P  I+
Sbjct: 276 LT-QLEKLDLRGCVNLSRLPSLIA 298

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 22/196 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + +Y   +         ++  +          +     +    N +  +I      +L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRAL- 68

Query: 62  GSLPSRIG-LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            +    +   + P    L L         P      S L  + +       L PDT+   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQF 126

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM----- 175
             LE L LA N L       +  +S+A+  +LR L++   P    LP  + +        
Sbjct: 127 AGLETLTLARNPLR------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 176 ---SLETLLITNCSIS 188
              +L++L +    I 
Sbjct: 181 GLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 21/186 (11%)

Query: 19  EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL 78
           E A      AL L    L        F +S L+ + +    L   LP  +      +E L
Sbjct: 76  EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQ-QFAGLETL 132

Query: 79  NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN---------LRNLEWLGLA 129
            L  N     +P+SI + ++L  L +        +P+ + +         L NL+ L L 
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISG 189
           +  + S        +S+AN + L+SL +  +PL   L  +I +L   LE L +  C+   
Sbjct: 192 WTGIRS------LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALR 243

Query: 190 NIPQAI 195
           N P   
Sbjct: 244 NYPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 15  EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
           +   E   L NL++L L    +   + A I N+  LK + + N+ L  +L   I   LP 
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPK 230

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134
           +E L+L         P      + L  L L   +    +P  I  L  LE L L      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-- 288

Query: 135 SSTSKLSFL-SSLANCKKLRSLNLIGNPLD 163
                LS L S +A       + +  +   
Sbjct: 289 ----NLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L +  +   +P  IANL+NL++L +  + L  +  A I ++  L+ + L   +  
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTAL 242

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            + P   G     ++ L L+      T+P  I   ++L  L L G      +P  I  L 
Sbjct: 243 RNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 122 NLEWLGLAYNNLTSSTSKL 140
               + +  +         
Sbjct: 302 ANCIILVPPHLQAQLDQHR 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 12/201 (5%)

Query: 2   LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L+ + L ++ +        ++ NL +L++L L  N  + + +        L+++ L    
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI---PDT 116
           L          +L  ++ LNL  +    +          L  L L GN F        ++
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 117 IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           +  L  LE L L++ +L+S         +  + K +  ++L  N L      ++ +L   
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQH-----AFTSLKMMNHVDLSHNRLTSSSIEALSHL--K 524

Query: 177 LETLLITNCSISGNIPQAIST 197
              L + +  IS  +P  +  
Sbjct: 525 GIYLNLASNHISIILPSLLPI 545

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 7e-17
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 6/195 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + +   +N L        + L NL  L L    +  +      +   L  ++L  N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL- 93

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             +          ++HL       S      + N   L  L LG N  S +         
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L+ L    N +   + +   +SSL     L SLNL GN + G  P +  +     ++L 
Sbjct: 154 KLKVLDFQNNAIHYLSKED--MSSLQQATNL-SLNLNGNDIAGIEPGAFDSA--VFQSLN 208

Query: 182 ITNCSISGNIPQAIS 196
                    I + + 
Sbjct: 209 FGGTQNLLVIFKGLK 223

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 8e-17
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 12/194 (6%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
            L+ + L YN+              LE L L    L    +   F N+  LK++ L ++ 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTI---PSSITNASKLTLLKLGGNTFSGLIPDT 116
           L      ++   LP ++HLNL+ N F        +S+    +L +L L     S +    
Sbjct: 437 L-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 117 IGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
             +L+ +  + L++N LTSS+       +L++ K +  LNL  N +   LPS +  LS  
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSI-----EALSHLKGIY-LNLASNHISIILPSLLPILS-Q 548

Query: 177 LETLLITNCSISGN 190
             T+ +    +   
Sbjct: 549 QRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 33/219 (15%), Positives = 62/219 (28%), Gaps = 35/219 (15%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ +YLG N +      +      L+ L    N +  +    + ++     + L  N   
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNAS------------------------ 97
            +            + LN    +    I   + N++                        
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 98  ----KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR 153
                +  + L  + F  +  +T      L+ L L   +L+         S L     L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------ELPSGLVGLSTLK 304

Query: 154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIP 192
            L L  N  +     S  N   SL  L I   +    + 
Sbjct: 305 KLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 7e-15
 Identities = 35/219 (15%), Positives = 65/219 (29%), Gaps = 27/219 (12%)

Query: 2   LKGIYLGYNKLHGEIPHEIAN--LRNLEALALGMNNLVGVVSAPIFNMSTLKIIIL-INN 58
            + +  G  +    I   + N  +++L        +   +  A    +  + +  + +  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 59  SLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG 118
             F ++ S        ++ L+L     S  +PS +   S L  L L  N F  L   +  
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLS----------------------SLANCKKLRSLN 156
           N  +L  L +  N            +                       L N   L+SLN
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 157 LIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAI 195
           L  N        +       LE L +    +     Q+ 
Sbjct: 383 LSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 10/197 (5%)

Query: 5   IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSL 64
                  L+ EIP  +    + E L    N L  + +     +  L  + L    +   +
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-YWI 72

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
                 S   ++ L L  N       ++++    L  L       S +    + N + LE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 125 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL-SMSLETLLIT 183
            L L  N+++S       L      +KL+ L+   N +       + +L   +  +L + 
Sbjct: 133 SLYLGSNHISSIK-----LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 184 NCSISGNIPQAISTKYL 200
              I+G  P A  +   
Sbjct: 188 GNDIAGIEPGAFDSAVF 204

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 6/163 (3%)

Query: 2   LKGIYLGYNKLHGEIPHE-IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ +   ++ L          +L  L  L +   N           +++L  + +  NS 
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             +  S +  +   +  L+L   +             +L LL +  N    L       L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
            +L  L  ++N + +S             K L   NL  N + 
Sbjct: 521 YSLSTLDCSFNRIETSKG-----ILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.0 bits (190), Expect = 9e-17
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 10/189 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
           L+ + L +N     +      L  L+ L    + L  V     F ++  L  + +   + 
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGN 119
                  I L L ++  L +  N F     S++  N + LT L L       +       
Sbjct: 437 -KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L  L+ L +++NNL    S     S       L +L+   N ++            SL  
Sbjct: 496 LHRLQLLNMSHNNLLFLDS-----SHYNQLYSLSTLDCSFNRIETSKGILQHFPK-SLAF 549

Query: 180 LLITNCSIS 188
             +TN S++
Sbjct: 550 FNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 8/196 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK + L  NK    I  +   L +L  L L  N L         ++ T  +  L  +   
Sbjct: 330 LKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             + S   + L  ++HL+ + +        S+  +  KL  L +               L
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            +L  L +A N+   +T    F    AN   L  L+L    L+         L   L+ L
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVF----ANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLL 502

Query: 181 LITNCSISGNIPQAIS 196
            +++ ++        +
Sbjct: 503 NMSHNNLLFLDSSHYN 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 41/199 (20%), Positives = 69/199 (34%), Gaps = 10/199 (5%)

Query: 2   LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L  + L  N L   G   +      +L  L L  N  + ++SA    +  L+ +   +++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST 410

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIG 118
           L         LSL  + +L++                + L  LK+ GN+F      +   
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE 178
           N  NL +L L+   L   +             +L+ LN+  N L     S    L  SL 
Sbjct: 471 NTTNLTFLDLSKCQLEQISW-----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLS 524

Query: 179 TLLITNCSISGNIPQAIST 197
           TL  +   I  +       
Sbjct: 525 TLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 8/182 (4%)

Query: 5   IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSL 64
                 KL  ++P +I    + + + L  N L  + S    N S L+ + L    +    
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
                  L  + +L L  N      P S +  + L  L       + L    IG L  L+
Sbjct: 73  DKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 125 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITN 184
            L +A+N + S        +  +N   L  ++L  N +     + +  L  + +  L  +
Sbjct: 132 KLNVAHNFIHS----CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 185 CS 186
            S
Sbjct: 188 MS 189

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 7e-14
 Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 11/201 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L  N +    P   + L +LE L      L  + S PI  + TLK + + +N + 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL----LKLGGNTFSGLIPDTI 117
                    +L  + H++L  N       + +    +       L +  N     I D  
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQA 200

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM-- 175
                L  L L  N  +S+  K        N   L    LI           I   S+  
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQ----NLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 176 SLETLLITNCSISGNIPQAIS 196
            L  + I    ++     +  
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDD 277

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 7e-14
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 12/207 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L   ++          L +L  L L  N +          +++L+ ++ +   L 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL- 116

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            SL S     L T++ LN+  N      +P+  +N + L  + L  N    +  + +  L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 121 RNLEW----LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           R        L ++ N +                 KL  L L GN     +  +       
Sbjct: 177 RENPQVNLSLDMSLNPID------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 177 LETLLITNCSISGNIPQAISTKYLFQN 203
           L    +            I    + + 
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEG 257

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
           L  + + Y     +       L +L  L +  N+      + +F N + L  + L    L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              +   +  +L  ++ LN+  N       S       L+ L    N             
Sbjct: 486 -EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSL 146
           ++L +  L  N++        FL  +
Sbjct: 545 KSLAFFNLTNNSVACICEHQKFLQWV 570

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 20/184 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNL----EALALGMNNLVGVVSAPIFNMSTLKIIILIN 57
           L  + L YN +     +++  LR       +L + +N +   +    F    L  + L  
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRG 213

Query: 58  NSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNAS--------KLTLLKLGGNTF 109
           N    ++      +L  +    L L  F       I   S         +   +L     
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273

Query: 110 SGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS 169
                     L N+  + LA  ++         L  +    K +SL++I   L  F    
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKY-------LEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 170 IGNL 173
           +  L
Sbjct: 327 LPFL 330

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 34/196 (17%), Positives = 52/196 (26%), Gaps = 21/196 (10%)

Query: 2   LKGIYLGYNKLHGEIPHE-IANLRNLEALALGMNNLVGVVSAPIFNMSTLK-------II 53
           L  + L  N     I    + NL  L    L +       +  IF  S ++         
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 54  ILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI 113
             +  +   S        L  V  ++L            +    K   L +         
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF- 322

Query: 114 PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL 173
                +L  L+ L L  N       K S          L  L+L  N L      S  +L
Sbjct: 323 --PTLDLPFLKSLTLTMN-------KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 174 SM-SLETLLITNCSIS 188
              SL  L ++     
Sbjct: 374 GTNSLRHLDLSFNGAI 389

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 7/178 (3%)

Query: 22  NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81
            L   E L L  N +  V ++    +  L+++ L +     ++      +LP +  L+L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 82  LNRFSGTIPSSITNASKLTLLKLGGN--TFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSK 139
            ++     P +      L  L+L     + + L      NL+ L  L L+ N + S    
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS---- 137

Query: 140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM-SLETLLITNCSISGNIPQAIS 196
           L    S      L+S++   N +       +  L   +L    +   S+   +     
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.8 bits (176), Expect = 5e-15
 Identities = 39/193 (20%), Positives = 66/193 (34%), Gaps = 8/193 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
            + + L +N +          L  L+ L LG       +    F N+  L+I+ L ++ +
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTI--PSSITNASKLTLLKLGGNTFSGL-IPDTI 117
              L       L  +  L L     S  +       N   LT L L  N    L +  + 
Sbjct: 86  -YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
           G L +L+ +  + N +         L  L   K L   +L  N L   +    G      
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHE--LEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 178 ETLLITNCSISGN 190
             +++    +SGN
Sbjct: 202 RNMVLEILDVSGN 214

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           ++ + L +  +          L++L+ L L  N +  +     + +  L+++ L  N L 
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL- 326

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           G L S     LP V +++L+ N  +     +     KL  L L  N  +     TI  + 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIP 381

Query: 122 NLEWLGLAYNNLTSSTS----------------KLSFLSSLANCKKLRSLNLIGNPLDGF 165
           ++  + L+ N L +                    L  L  L     L+ L L  N     
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 166 LPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
                 + + SLE L +    +       + 
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELC 472

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 44/193 (22%), Positives = 64/193 (33%), Gaps = 17/193 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
           +  I+L  NKL   +P        +    L  N L  +        +  L+I+IL  N  
Sbjct: 383 IPDIFLSGNKLV-TLPKINLTANLIH---LSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-----TNASKLTLLKLGGNTFSGLIPD 115
                 +     P++E L L  N       + +        S L +L L  N  + L P 
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 116 TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM 175
              +L  L  L L  N LT        LS       L  L++  N L    P    +LS+
Sbjct: 499 VFSHLTALRGLSLNSNRLTV-------LSHNDLPANLEILDISRNQLLAPNPDVFVSLSV 551

Query: 176 SLETLLITNCSIS 188
              T     C   
Sbjct: 552 LDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 18/191 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLR--NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           + G   G++ +     +  A L   ++  L L    +  + S     +  LK++ L  N 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           +   +       L  ++ LNL  N       S+     K+  + L  N  + +   T   
Sbjct: 302 IN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L  L+ L L  N LT          ++     +  + L GN L      ++  ++++   
Sbjct: 361 LEKLQTLDLRDNALT----------TIHFIPSIPDIFLSGNKL-----VTLPKINLTANL 405

Query: 180 LLITNCSISGN 190
           + ++   +   
Sbjct: 406 IHLSENRLENL 416

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 20/204 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIAN-LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + +  N    +I    +N +   +A +L + + +        N+         + + 
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD------PDQNT 259

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
           F       GL+  +V HL+L                  L +L L  N  + +  +    L
Sbjct: 260 FA------GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            NL+ L L+YN L    S     S+     K+  ++L  N +      +   L   L+TL
Sbjct: 314 DNLQVLNLSYNLLGELYS-----SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTL 367

Query: 181 LITNCSISGNIPQAISTKYLFQNN 204
            + + +++  I    S   +F + 
Sbjct: 368 DLRDNALT-TIHFIPSIPDIFLSG 390

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 12/189 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + + L  N +         +L +LE L LG N++  +       +++L  + L +N L 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL- 135

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGG-NTFSGLIPDTIGN 119
             +PS     L  +  L L  N    +IPS        L  L LG       +       
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L NL++L L   N+         + +L     L  L + GN      P S   LS SL+ 
Sbjct: 195 LFNLKYLNLGMCNIKD-------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKK 246

Query: 180 LLITNCSIS 188
           L + N  +S
Sbjct: 247 LWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
           L+ ++L  N +   IP      + +L  L LG    +  +S   F  +  LK + L   +
Sbjct: 149 LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           +   +P+     L  +E L +  N F    P S    S L  L +  +  S +  +    
Sbjct: 208 IK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           L +L  L LA+NNL+S    L         + L  L+L  NP +
Sbjct: 265 LASLVELNLAHNNLSSLPHDL-----FTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
               +LNL  N        +  +   L +L+LG N+   +       L +L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185
           LT   S      +     KLR L L  NP++     +   +  SL  L +   
Sbjct: 135 LTVIPS-----GAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGEL 181

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.4 bits (178), Expect = 2e-15
 Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 9/188 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           LK + +G N L   I H   + L +LE L L   NL  + +  + ++  L ++ L + ++
Sbjct: 130 LKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             ++       L  ++ L +    +  T+  +      LT L +     + +    + +L
Sbjct: 189 -NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
             L +L L+YN +++        S L    +L+ + L+G  L    P +   L+  L  L
Sbjct: 248 VYLRFLNLSYNPISTIEG-----SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVL 301

Query: 181 LITNCSIS 188
            ++   ++
Sbjct: 302 NVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 8e-15
 Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + + LG N++      E A+  +LE L L  N +  V      N+  L+ + L +N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL- 92

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             +P  +   L  +  L++  N+    +     +   L  L++G N    +       L 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           +LE L L   NLTS  +      +L++   L  L L    ++     S   L   L+ L 
Sbjct: 153 SLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLE 206

Query: 182 ITNCSISGNIP 192
           I++      + 
Sbjct: 207 ISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.2 bits (167), Expect = 9e-14
 Identities = 38/207 (18%), Positives = 81/207 (39%), Gaps = 23/207 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + L  N+L   IP  +   L NL  L +  N +V ++     ++  LK + + +N L
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              +  R    L ++E L LE    +     ++++   L +L+L     + +   +   L
Sbjct: 141 -VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 121 RNLEWLGLAYNNLTSSTSKLSF---------LSS----------LANCKKLRSLNLIGNP 161
             L+ L +++     + +             ++           + +   LR LNL  NP
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 162 LDGFLPSSIGNLSMSLETLLITNCSIS 188
           +     S +  L   L+ + +    ++
Sbjct: 260 ISTIEGSMLHELL-RLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L +  ++    +    L  L+ L +     +  ++        L  + + + +L 
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL- 236

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            ++P      L  +  LNL  N  S    S +    +L  ++L G   + + P     L 
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
            L  L ++ N LT+        S   +   L +L L  NPL
Sbjct: 297 YLRVLNVSGNQLTTLEE-----SVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 9/174 (5%)

Query: 15  EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
            +P  I        L LG N +  +      +   L+ + L  N +  ++      +L  
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFN 81

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134
           +  L L  NR         T  S LT L +  N    L+     +L NL+ L +  N+L 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
             + +     + +    L  L L    L      ++ +L   L  L + + +I+
Sbjct: 142 YISHR-----AFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 2   LKGIYLGYNKLHGEIPHE-IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L  + + +  L   +P+  + +L  L  L L  N +  +  + +  +  L+ I L+   L
Sbjct: 226 LTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFS 110
              +       L  +  LN+  N+ +    S   +   L  L L  N  +
Sbjct: 285 -AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + + L  N++     +   +LR+LE L L  N++  +       ++ L  + L +N L 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL- 124

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGG-NTFSGLIPDTIGN 119
            ++P+   + L  ++ L L  N    +IPS        L  L LG     S +       
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L NL +L LA  NL         + +L    KL  L+L GN L    P S   L   L+ 
Sbjct: 184 LSNLRYLNLAMCNLRE-------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQK 235

Query: 180 LLITNCSIS 188
           L +    I 
Sbjct: 236 LWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
           LK ++L  N +   IP      + +L  L LG    +  +S   F  +S L+ + L   +
Sbjct: 138 LKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           L   +P+     L  ++ L+L  N  S   P S      L  L +  +    +  +   N
Sbjct: 197 L-REIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           L++L  + LA+NNLT     L           L  ++L  NP +
Sbjct: 254 LQSLVEINLAHNNLTLLPHDL-----FTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
                LNL  N+      +S  +   L +L+L  N    +       L NL  L L  N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC 185
           LT+  +      +     KL+ L L  NP++     +   +  SL  L +   
Sbjct: 124 LTTIPN-----GAFVYLSKLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGEL 170

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 7e-15
 Identities = 41/213 (19%), Positives = 77/213 (36%), Gaps = 32/213 (15%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +K + L  N L      ++A    LE L L  N L       + ++STL+ + L NN + 
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV- 92

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             L        P++E L+   N  S  +  S         + L  N  + L     G   
Sbjct: 93  QELLV-----GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRS 144

Query: 122 NLEWLGLAYNNLTS------------------STSKLSFLSSLANCKKLRSLNLIGNPLD 163
            +++L L  N + +                    + +  +       KL++L+L  N L 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 164 GFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
            F+     + +  +  + + N  +   I +A+ 
Sbjct: 205 -FMGPEFQSAA-GVTWISLRNNKLV-LIEKALR 234

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 32/204 (15%), Positives = 71/204 (34%), Gaps = 13/204 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           ++ ++   N +   +       +  + + L  N +  +        S ++ + L  N + 
Sbjct: 101 IETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
               + +  S  T+EHLNL+ N     +   +   +KL  L L  N  +  +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAA 214

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            + W+ L  N L           +L   + L   +L GN           + +  ++T+ 
Sbjct: 215 GVTWISLRNNKLV------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 182 I-TNCSISGNIPQAISTKYLFQNN 204
             T   ++G   +  +   L    
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 13/121 (10%)

Query: 68  IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
           I  +    +   +  +     + S   +A  +  L L GN  S +    +     LE L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI 187
           L+ N L            L +   LR+L+L  N +       +     S+ETL   N +I
Sbjct: 65  LSSNVLYE-------TLDLESLSTLRTLDLNNNYV-----QELLVGP-SIETLHAANNNI 111

Query: 188 S 188
           S
Sbjct: 112 S 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 16  IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTV 75
           I     N    +   +  ++L   +++   +   +K + L  N L   + +        +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 76  EHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS 135
           E LNL  N         + + S L  L L  N         +    ++E L  A NN++ 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 136 -STSKLSFLSSL---------------ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            S S+     ++                   +++ L+L  N +D    + +   S +LE 
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 180 LLITNCSISGNIPQAISTKYL 200
           L +    I  ++   +    L
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKL 193

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 9/195 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + I+L  N++           RNL  L L  N L  + +A    ++ L+ + L +N+  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNL 120
            S+       L  +  L+L+       +   +    + L  L L  N    L  DT  +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            NL  L L  N ++S         +      L  L L  N +    P +  +L   L TL
Sbjct: 153 GNLTHLFLHGNRISSVPE-----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTL 206

Query: 181 LITNCSISGNIPQAI 195
            +   ++S  +P   
Sbjct: 207 YLFANNLS-ALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + L  N     +       L  L  L L    L  +       ++ L+ + L +N+L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             +LP      L  + HL L  NR S     +      L  L L  N  + + P    +L
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
             L  L L  NNL++  ++      LA  + L+ L L  NP  
Sbjct: 201 GRLMTLYLFANNLSALPTEA-----LAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 10/175 (5%)

Query: 15  EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
            +P  I      + + L  N +  V +A       L I+ L +N L   + +     L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLAL 81

Query: 75  VEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNL 133
           +E L+L  N    ++  +      +L  L L       L P     L  L++L L  N L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 134 TSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
            +         +  +   L  L L GN +      +   L  SL+ LL+    ++
Sbjct: 142 QALPD-----DTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVA 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + +  +K+    P  IANL +L +L+L  N +  +  +P+ ++++L       N + 
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQIT 212

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P     ++  +  L +  N+ +   P  + N S+LT L++G N  S +  + + +L 
Sbjct: 213 DITPVA---NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L+ L +  N ++        +S L N  +L SL L  N L       IG L+ +L TL 
Sbjct: 266 KLKMLNVGSNQISD-------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLF 317

Query: 182 ITNCSISGNIP 192
           ++   I+   P
Sbjct: 318 LSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 16/161 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L       N++    P  +AN+  L +L +G N +  +  +P+ N+S L  + +  N + 
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQI- 255

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            S  + +   L  ++ LN+  N+ S    S + N S+L  L L  N       + IG L 
Sbjct: 256 -SDINAVK-DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
           NL  L L+ N++T        +  LA+  K+ S +     +
Sbjct: 312 NLTTLFLSQNHITD-------IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 20/191 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
                L    +   +      L ++  L +    +  +    I  ++ L+ + L  N + 
Sbjct: 24  GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQIT 79

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P     +L  + +L +  N+   T  S++ N + L  L L  +  S + P  + NL 
Sbjct: 80  DISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            +  L L  N+  S       LS L+N   L  L +  + +     + I NL+  L +L 
Sbjct: 133 KMYSLNLGANHNLSD------LSPLSNMTGLNYLTVTESKVKDV--TPIANLT-DLYSLS 183

Query: 182 ITNCSISGNIP 192
           +    I    P
Sbjct: 184 LNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 18/173 (10%)

Query: 20  IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79
            A+L       L   ++  VV      + ++  +++    +  S+   I   L  +E+LN
Sbjct: 18  DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKV-ASIQG-IE-YLTNLEYLN 72

Query: 80  LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSK 139
           L  N+ +   P  ++N  KLT L +G N  + +    + NL NL  L L  +N++     
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISD---- 124

Query: 140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIP 192
              +S LAN  K+ SLNL  N       S + N++  L  L +T   +    P
Sbjct: 125 ---ISPLANLTKMYSLNLGANHNLS-DLSPLSNMT-GLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + +G NK+    P  +ANL  L  L +G N +  +    + +++ LK++ + +N + 
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI- 277

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            S  S +  +L  +  L L  N+        I   + LT L L  N  + + P  + +L 
Sbjct: 278 -SDISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 122 NLEWLGLAYNNLT 134
            ++    A   + 
Sbjct: 334 KMDSADFANQVIK 346

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 3e-13
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 7/172 (4%)

Query: 15  EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
           +IP  +    + + L L  N L  + S   F+   L+++ L    +  ++      SL  
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSH 77

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134
           +  L L  N        + +  S L  L       + L    IG+L+ L+ L +A+N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS 186
           S           +N   L  L+L  N +     + +  L       L  + S
Sbjct: 138 S----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 10/186 (5%)

Query: 2   LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L+ + L  N L   G          +L+ L L  N ++ + S     +  L+ +   +++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI-PDTIG 118
           L       + LSL  + +L++                S L +LK+ GN+F     PD   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE 178
            LRNL +L L+   L   +      ++  +   L+ LN+  N L          L+ SL+
Sbjct: 468 ELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMASNQLKSVPDGIFDRLT-SLQ 521

Query: 179 TLLITN 184
            + +  
Sbjct: 522 KIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 1/148 (0%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ +   ++ L       +  +LRNL  L +   +     +     +S+L+++ +  NS 
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             +    I   L  +  L+L   +     P++  + S L +L +  N    +       L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLAN 148
            +L+ + L  N    S  ++ +LS   N
Sbjct: 518 TSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 42/206 (20%), Positives = 73/206 (35%), Gaps = 7/206 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L  N +        + L +L+ L     NL  + + PI ++ TLK + + +N + 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL----LKLGGNTFSGLIPDTI 117
                    +L  +EHL+L  N+      + +    ++ L    L L  N  + + P   
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
             +  L  L L  N  + +  K      LA  +  R L L     +G L     +    L
Sbjct: 198 KEI-RLHKLTLRNNFDSLNVMKTCI-QGLAGLEVHR-LVLGEFRNEGNLEKFDKSALEGL 254

Query: 178 ETLLITNCSISGNIPQAISTKYLFQN 203
             L I    ++           LF  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNC 280

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 12/207 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L   ++         +L +L  L L  N +  +       +S+L+ ++ +  +L 
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL- 112

Query: 62  GSLPSRIGLSLPTVEHLNLELNRF-SGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            SL +     L T++ LN+  N   S  +P   +N + L  L L  N    +    +  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 121 RNLEW----LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
             +      L L+ N +                 +L  L L  N     +  +       
Sbjct: 173 HQMPLLNLSLDLSLNPMN------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 177 LETLLITNCSISGNIPQAISTKYLFQN 203
           LE   +               K   + 
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEG 253

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 16/189 (8%)

Query: 10  NKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG 69
           +    +I      L N+ + +L    +  V           + + L+N       P+   
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFG-QFPT--- 321

Query: 70  LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN--TFSGLIPDTIGNLRNLEWLG 127
           L L +++ L    N+       S  +   L  L L  N  +F G    +     +L++L 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI 187
           L++N + + +S    L  L        L+   + L      S+     +L  L I++   
Sbjct: 380 LSFNGVITMSSNFLGLEQL------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 188 SGNIPQAIS 196
                   +
Sbjct: 434 RVAFNGIFN 442

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 16/188 (8%)

Query: 4   GIYLGYNKLHGEIPHEIANLRNL--EALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
           G +     L       +  L NL  E   L   +        +F  ++ +    L++ ++
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
                         +E +N +  +F      S      L  L    N       +   +L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSEV--DL 346

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            +LE+L L+ N L+             +   L+ L+L  N +   + S+   L   LE L
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTS---LKYLDLSFNGVI-TMSSNFLGLE-QLEHL 401

Query: 181 LITNCSIS 188
              + ++ 
Sbjct: 402 DFQHSNLK 409

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ +   ++ L       +  +LRNL  L +   +     +     +S+L+++ +  NS 
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             +    I   L  +  L+L   +     P++  + S L +L +  N F  L       L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
            +L+ L  + N++ +S  +   L        L  LNL  N   
Sbjct: 223 NSLQVLDYSLNHIMTSKKQE--LQHFP--SSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 10/190 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL--VGVVSAPIFNMSTLKIIILINNS 59
              + L  NKL          L  L  L+L  N L   G  S   F  ++LK + L  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIG 118
           +  ++ S   L L  +EHL+ + +        S+  +   L  L +              
Sbjct: 90  V-ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE 178
            L +LE L +A N+   +     F       + L  L+L    L+   P++  +LS SL+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIF----TELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQ 202

Query: 179 TLLITNCSIS 188
            L +++ +  
Sbjct: 203 VLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 3e-11
 Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 23/205 (11%)

Query: 2   LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L  + L  N L   G          +L+ L L  N ++ + S     +  L+ +   +++
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 112

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTF-SGLIPDTIG 118
           L       + LSL  + +L++                S L +LK+ GN+F    +PD   
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 119 NLRNLEWLGLAYNNLTS-------STSKLSFLS------------SLANCKKLRSLNLIG 159
            LRNL +L L+   L         S S L  L+                   L+ L+   
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 160 NPLDGFLPSSIGNLSMSLETLLITN 184
           N +       + +   SL  L +T 
Sbjct: 233 NHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 13/129 (10%)

Query: 63  SLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN--TFSGLIPDTIGNL 120
           S+P+ I     +   L LE N+            ++LT L L  N  +F G    +    
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI-GNLSMSLET 179
            +L++L L++N + + +S    L        L  L+   + L      S+  +L  +L  
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQ------LEHLDFQHSNLKQMSEFSVFLSLR-NLIY 130

Query: 180 LLITNCSIS 188
           L I++    
Sbjct: 131 LDISHTHTR 139

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 32/214 (14%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +K + L  N L      ++A    LE L L  N L       + ++STL+ + L NN + 
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYV- 92

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             L        P++E L+   N  S    S          + L  N  + L     G   
Sbjct: 93  QELLV-----GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRS 144

Query: 122 NLEWLGLAYNNLTS------------------STSKLSFLSSLANCKKLRSLNLIGNPLD 163
            +++L L  N + +                    + +  +       KL++L+L  N L 
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 164 GFLPSSIGNLSMSLETLLITNCSISGNIPQAIST 197
            F+     + +  +  + + N  +   I +A+  
Sbjct: 205 -FMGPEFQSAA-GVTWISLRNNKLV-LIEKALRF 235

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 12/179 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           ++ ++   N +   +    +  +  + + L  N +  +        S ++ + L  N + 
Sbjct: 101 IETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
               + +  S  T+EHLNL+ N     +   +   +KL  L L  N  +  +     +  
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAA 214

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            + W+ L  N L           +L   + L   +L GN           + +  ++T+
Sbjct: 215 GVTWISLRNNKLV------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 13/121 (10%)

Query: 68  IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG 127
           I  +    +   +  +     + S   +A  +  L L GN  S +    +     LE L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSI 187
           L+ N L            L +   LR+L+L  N +       +     S+ETL   N +I
Sbjct: 65  LSSNVLYE-------TLDLESLSTLRTLDLNNNYV-----QELLVGP-SIETLHAANNNI 111

Query: 188 S 188
           S
Sbjct: 112 S 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 16  IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTV 75
           I     N    +   +  ++L   +++   +   +K + L  N L     + +      +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKL 60

Query: 76  EHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS 135
           E LNL  N         + + S L  L L  N         +    ++E L  A NN++ 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 136 -STSKLSFLSSL---------------ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            S S+     ++                   +++ L+L  N +D    + +   S +LE 
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 180 LLITNCSISGNIPQAISTKYL 200
           L +    I  ++   +    L
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKL 193

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 6/203 (2%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK + L  NKL   +  E  +   +  ++L  N LV ++   +     L+   L  N   
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
                        V+ +             +    +  TL   G      L       L 
Sbjct: 251 CGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L+    A  +   S ++        N  + R ++ +       +   +     +  TL 
Sbjct: 309 ALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRT-VIDQVTLRKQAKITLE 366

Query: 182 ITNCSISGNIPQAISTKYLFQNN 204
               ++   +             
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGT 389

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/191 (12%), Positives = 44/191 (23%), Gaps = 12/191 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  I L  NKL   I   +   +NLE   L  N          F  S  + +  +     
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTV 272

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG--- 118
             L  +           +                   L   +    +  G   + +    
Sbjct: 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 119 -NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
            N      +        +   ++         +   +L      LD  + +     +   
Sbjct: 333 ENQARQREIDALKEQYRTVIDQV-----TLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

Query: 178 ETLLITNCSIS 188
            TL      I 
Sbjct: 388 GTLQQAVGQIE 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 43/206 (20%), Positives = 80/206 (38%), Gaps = 38/206 (18%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +  N+L   +P     L  L   +  + +L  + S        L  + +  N L 
Sbjct: 83  LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL- 133

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            SLP       P ++ L++  N+ + ++P+  +    L  L    N  + L P     L+
Sbjct: 134 TSLPV----LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTSL-PMLPSGLQ 184

Query: 122 NLEWLGLAYNNLTS---STSKLSFLSSLAN--------CKKLRSLNLIGNPLDGFLPSSI 170
            L    ++ N L S     S+L  L +  N           L+ L + GN L   LP   
Sbjct: 185 ELS---VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPVLP 240

Query: 171 GNLSMSLETLLITNCSISGNIPQAIS 196
                 L+ L+++   ++ ++P   S
Sbjct: 241 SE----LKELMVSGNRLT-SLPMLPS 261

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 26/161 (16%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +  N+L   +P   + L  L A    + +L           S LK +I+  N L 
Sbjct: 183 LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA-------LPSGLKELIVSGNRL- 233

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            SLP      L   + L +  NR + ++P   +    L  L +  N  + L P+++ +L 
Sbjct: 234 TSLPVLPS-EL---KELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLTRL-PESLIHLS 284

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
           +   + L  N L+  T +          +++ S      P+
Sbjct: 285 SETTVNLEGNPLSERTLQ--------ALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 48  STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN 107
           +   ++ +  + L  +LP  +   +     L +  N  + ++P+       L  L++ GN
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLPAHI---TTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 108 TFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLAN--------CKKLRSLNLIG 159
             + L P     L  L        +L +  S L  L    N           L+ L++  
Sbjct: 92  QLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 160 NPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
           N L   LP+        L  L   N  ++ ++P   S
Sbjct: 151 NQLAS-LPALPSE----LCKLWAYNNQLT-SLPMLPS 181

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 2/190 (1%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
           L+ + L  N L          L +L+ L L  N    +    +F N++ L+ + + N   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
           F  +       L ++  L ++          S+ +   +  L L  +  + L+      L
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 121 RNLEWLGLAYNNLTS-STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            ++ +L L   NL     S L      +  KKL     +           +    + L  
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 180 LLITNCSISG 189
           +   +C+++G
Sbjct: 256 VEFDDCTLNG 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +K + L +NK+      ++    NL+ L L  + +  +     +++ +L+ + L +N L 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL- 86

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSG-TIPSSITNASKLTLLKLGG-NTFSGLIPDTIGN 119
            SL S     L ++++LNL  N +    + S   N + L  L++G   TFS +       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L +L  L +   +L +  S      SL + + +  L L  +     L      LS S+  
Sbjct: 147 LTSLNELEIKALSLRNYQS-----QSLKSIRDIHHLTLHLSESAFLLEIFADILS-SVRY 200

Query: 180 LLITNCSISGNIPQAISTKYLFQN 203
           L + + +++      +    +   
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSP 224

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 6/188 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L  ++++        +L +LE L L  N+L  + S+    +S+LK + L+ N   
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 62  GSLPSRIGLSLPTVEHLNL-ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
               + +  +L  ++ L +  +  FS          + L  L++   +       ++ ++
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
           R++  L L  +                    +R L L    L  F  S +    +S    
Sbjct: 172 RDIHHLTLHLSESAFLLE-----IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 181 LITNCSIS 188
            +      
Sbjct: 227 KLAFRGSV 234

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 9/175 (5%)

Query: 15  EIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT 74
            IP  +     +++L L  N +  +    +   + L+++IL ++ +  ++      SL +
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGS 75

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNL 133
           +EHL+L  N  S    S     S L  L L GN +  L +     NL NL+ L +     
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 134 TSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
            S   ++ F    A    L  L +    L  +   S+ ++   +  L +     +
Sbjct: 136 FSEIRRIDF----AGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV---SAPIFNMSTLKIIILINN 58
           +K I +  +K+         +L++LE L L  N +V      SA      +L+ ++L  N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 59  SLFGSLPSRIGL--SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDT 116
            L  S+     +  +L  +  L++  N F   +P S     K+  L L       +    
Sbjct: 372 HL-RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV---K 426

Query: 117 IGNLRNLEWLGLAYNNLTSSTS-------------KLSFLSSLANCKKLRSLNLIGNPLD 163
               + LE L ++ NNL S +              KL  L   +    L  + +  N L 
Sbjct: 427 TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLK 486

Query: 164 GFLPSSIGNLSMSLETLLITN 184
                    L+ SL+ + +  
Sbjct: 487 SVPDGIFDRLT-SLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 63  SLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN 122
           S+PS +      ++ L+L  N+ +      +   + L +L L  +  + +  D   +L +
Sbjct: 19  SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 123 LEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLI 182
           LE L L+ N+L+S +S     S       L+ LNL+GNP      +S+     +L+TL I
Sbjct: 76  LEHLDLSDNHLSSLSS-----SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 183 TNCSISGNIP 192
            N      I 
Sbjct: 131 GNVETFSEIR 140

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 16/172 (9%)

Query: 22  NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81
               +  L +    L   +S     +  +K I + N+ +F  +P      L ++E L+L 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342

Query: 82  LNRFSGTI---PSSITNASKLTLLKLGGNTFSGL--IPDTIGNLRNLEWLGLAYNNLTSS 136
            N          +       L  L L  N    +    + +  L+NL  L ++ N     
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-- 400

Query: 137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
                   S    +K+R LNL    +          +  +LE L ++N ++ 
Sbjct: 401 ----PMPDSCQWPEKMRFLNLSSTGIRVVKT----CIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 5/142 (3%)

Query: 49  TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT 108
           TL  +   N S    +     +   T+  L++        + +  +   K+  + +  + 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 109 FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD--GFL 166
              +      +L++LE+L L+ N +     K S  +       L++L L  N L      
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 167 PSSIGNLSMSLETLLITNCSIS 188
              +  L  +L +L I+  +  
Sbjct: 380 GEILLTLK-NLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 18/164 (10%)

Query: 2   LKGIYLGYNKLH--GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           L+ + L  N L    +    +  L+NL +L +  N     +         ++ + L +  
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG 421

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           +   + + I     T+E L++  N    +    +     L  L +  N    L   +   
Sbjct: 422 I-RVVKTCI---PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLKTLPDAS--L 471

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
              L  + ++ N L S                L+ + L  NP D
Sbjct: 472 FPVLLVMKISRNQLKSVPD-----GIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 11/147 (7%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + +  N  H  +P        +  L L    +  V         TL+++ + NN+L 
Sbjct: 389 LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLDVSNNNL- 443

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
                   L LP ++ L +  N+   T+P + +    L ++K+  N    +       L 
Sbjct: 444 ----DSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLAN 148
           +L+ + L  N    S  ++ +LS   N
Sbjct: 498 SLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 3e-12
 Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 8/193 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
           L+ + L YN L   +       L +L  L L  N    +    +F +++ L+I+ + N  
Sbjct: 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
            F  +  +    L  +E L ++ +      P S+ +   ++ L L       L+   +  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 120 LRNLEWLGLAYNNLTSST-SKLSFLS--SLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
             ++E L L   +L +   S+LS     SL      R++ +    L   +   +  +S  
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQIS-G 278

Query: 177 LETLLITNCSISG 189
           L  L  +   +  
Sbjct: 279 LLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 7e-10
 Identities = 43/198 (21%), Positives = 83/198 (41%), Gaps = 9/198 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +K + L  N++      ++    NL+AL L  N +  +      ++ +L+ + L  N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL- 112

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNT-FSGLIPDTIGN 119
            +L S     L ++  LNL  N +     +S+ ++ +KL +L++G    F+ +       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L  LE L +  ++L S         SL + + +  L L        L   +   S S+E 
Sbjct: 173 LTFLEELEIDASDLQSYEP-----KSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVEC 226

Query: 180 LLITNCSISGNIPQAIST 197
           L + +  +       +ST
Sbjct: 227 LELRDTDLDTFHFSELST 244

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 14/170 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + +G      +I  +  A L  LE L +  ++L       + ++  +  +IL     
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-------I 113
              L         +VE L L          S ++     +L+K        +       +
Sbjct: 211 -ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269

Query: 114 PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
              +  +  L  L  + N L S                L+ + L  NP D
Sbjct: 270 MKLLNQISGLLELEFSRNQLKSVPD-----GIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 10/193 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L+ + L  N ++  I  +  ++L +LE L L  N L  + S+    +S+L  + L+ N  
Sbjct: 78  LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGN 119
                + +   L  ++ L +        I        + L  L++  +      P ++ +
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           ++N+  L L                 +     +  L L    LD F  S +     +   
Sbjct: 197 IQNVSHLILHMKQHILLLE-----IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 180 LLI--TNCSISGN 190
                 N  I+  
Sbjct: 252 KKFTFRNVKITDE 264

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 25  NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84
            +++L L  N +  + ++ +     L+ ++L +N +  ++      SL ++EHL+L  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNY 111

Query: 85  FSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTI-GNLRNLEWLGLAYNNLTSSTSKLSF 142
            S  + SS     S LT L L GN +  L   ++  +L  L+ L +   +  +   +  F
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
               A    L  L +  + L  + P S+ ++  ++  L++      
Sbjct: 171 ----AGLTFLEELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 6/149 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL- 60
           L+ + +  + L    P  + +++N+  L L M   + ++   +   S+++ + L +  L 
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235

Query: 61  ---FGSLPSRIGLSLPTVEHL-NLELNRFSGT-IPSSITNASKLTLLKLGGNTFSGLIPD 115
              F  L +    SL       N+++   S   +   +   S L  L+   N    +   
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG 295

Query: 116 TIGNLRNLEWLGLAYNNLTSSTSKLSFLS 144
               L +L+ + L  N    S  ++ +LS
Sbjct: 296 IFDRLTSLQKIWLHTNPWDCSCPRIDYLS 324

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             S+PS +      V+ L+L  NR +    S +     L  L L  N  + +  D+  +L
Sbjct: 43  LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            +LE L L+YN L++ +S     S       L  LNL+GNP      +S+ +    L+ L
Sbjct: 100 GSLEHLDLSYNYLSNLSS-----SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 181 LITNCSISGNIP 192
            + N      I 
Sbjct: 155 RVGNMDTFTKIQ 166

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 11/190 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKIIILINNSL 60
           L  + +  N++        + LRN+  + +G N L         F+   L  + +    L
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              +P  +  +L     L+L+ N+        +   SKL  L LG N    +   ++  L
Sbjct: 185 -TGIPKDLPETL---NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
             L  L L  N L+         + L + K L+ + L  N +     +    +   ++  
Sbjct: 241 PTLRELHLDNNKLS------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 181 LITNCSISGN 190
                S+  N
Sbjct: 295 YYNGISLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 25/214 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
              + L  N +      +   L++L AL L  N +  +       +  L+ + +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL- 114

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN--TFSGLIPDTIGN 119
             +P  +     ++  L +  NR         +    +  +++GGN    SG  P     
Sbjct: 115 VEIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 120 LRNLEWLGLAYNNLTS----STSKLSFL------------SSLANCKKLRSLNLIGNPLD 163
           L  L +L ++   LT         L+ L              L    KL  L L  N + 
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 164 GFLPSSIGNLSMSLETLLITNCSISGNIPQAIST 197
                S+  L  +L  L + N  +S  +P  +  
Sbjct: 231 MIENGSLSFLP-TLRELHLDNNKLS-RVPAGLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 14/178 (7%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ +      L   +P EI+   +   L L  N++  +       +  L  ++L+NN + 
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI- 90

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             +  +    L  ++ L +  N     IP ++   S L  L++  N    +       LR
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF---LPSSIGNLSMS 176
           N+  + +  N L +S  +      L    KL  L +    L G    LP ++  L + 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLPETLNELHLD 201

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + +   KL   IP ++     L  L L  N +  +    +   S L  + L +N + 
Sbjct: 174 LNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI- 229

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             + +     LPT+  L+L+ N+ S  +P+ + +   L ++ L  N  + +  +    + 
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 122 ------NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157
                     + L  N +     + +    +       ++  
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCV---TDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 19/151 (12%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
           P    L+L+ N  S            L  L L  N  S +       LR L+ L ++ N+
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 133 LTS--------------STSKLSFLS--SLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           L                  +++  +     +  + +  + + GNPL+           + 
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 177 LETLLITNC---SISGNIPQAISTKYLFQNN 204
           L  L I+      I  ++P+ ++  +L  N 
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNK 204

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L  ++L +NK+   I  E       L  L LG N +  + +  +  + TL+ + L NN L
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-------TNASKLTLLKLGGN--TFSG 111
              +P+ +   L  ++ + L  N  +  +  +           +    + L  N   +  
Sbjct: 254 -SRVPAGLP-DLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 112 LIPDTIGNLRNLEWLGLAYN 131
           + P T   + +   +     
Sbjct: 311 VQPATFRCVTDRLAIQFGNY 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 18/173 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L  N++    P  ++ L  L  L LG N +  +  +P+  ++ L  + L  N L 
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLE 300

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P     +L  + +L L  N  S   P  +++ +KL  L    N  S +    + NL 
Sbjct: 301 DISPIS---NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLT 353

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS 174
           N+ WL   +N ++        L+ LAN  ++  L L          +   N+S
Sbjct: 354 NINWLSAGHNQISD-------LTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 36/209 (17%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL- 60
           L  I +  N++    P  +ANL NL  L L  N +  +   P+ N++ L  + L +N++ 
Sbjct: 92  LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS 147

Query: 61  ----FGSLPSRIGLS-------------LPTVEHLNLELNRFSGTIPSSITNASKLTLLK 103
                  L S   LS             L T+E L++  N+ S    S +   + L  L 
Sbjct: 148 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 205

Query: 104 LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
              N  S + P  +G L NL+ L L  N L         + +LA+   L  L+L  N + 
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD-------IGTLASLTNLTDLDLANNQIS 256

Query: 164 GFLPSSIGNLSMSLETLLITNCSISGNIP 192
              P  +  L+  L  L +    IS   P
Sbjct: 257 NLAP--LSGLT-KLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 22/188 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  I    N+L    P  + NL  L  + +  N +  +   P+ N++ L  + L NN + 
Sbjct: 70  LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQIT 125

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P +   +L  +  L L  N  S    S+++  + L  L   GN  + L P  + NL 
Sbjct: 126 DIDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLT 177

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            LE L ++ N ++        +S LA    L SL    N +     + +G L+ +L+ L 
Sbjct: 178 TLERLDISSNKVSD-------ISVLAKLTNLESLIATNNQISDI--TPLGILT-NLDELS 227

Query: 182 ITNCSISG 189
           +    +  
Sbjct: 228 LNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 22/191 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  +      +  +    +  L NL  +    N L  +   P+ N++ L  I++ NN + 
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIA 103

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P     +L  +  L L  N+ +   P  + N + L  L+L  NT S +    +  L 
Sbjct: 104 DITPLA---NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLT 156

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           +L+ L             ++ L  LAN   L  L++  N +     S +  L+ +LE+L+
Sbjct: 157 SLQQLSFGNQ--------VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLT-NLESLI 205

Query: 182 ITNCSISGNIP 192
            TN  IS   P
Sbjct: 206 ATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 28/185 (15%)

Query: 20  IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN 79
              L       LG  N+   V     ++  +  +      +       +   L  +  +N
Sbjct: 20  DTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI--KSIDGVE-YLNNLTQIN 74

Query: 80  LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS---- 135
              N+ +   P  + N +KL  + +  N  + + P  + NL NL  L L  N +T     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL 130

Query: 136 -----------STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITN 184
                      S++ +S +S+L+    L+ L+      D      + NL+ +LE L I++
Sbjct: 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD---LKPLANLT-TLERLDISS 186

Query: 185 CSISG 189
             +S 
Sbjct: 187 NKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 71  SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY 130
           +L       L     + T+    T+  ++T L+        +    +  L NL  +  + 
Sbjct: 22  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 77

Query: 131 NNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN 190
           N LT        ++ L N  KL  + +  N +     + + NL+ +L  L + N  I+  
Sbjct: 78  NQLTD-------ITPLKNLTKLVDILMNNNQIADI--TPLANLT-NLTGLTLFNNQITDI 127

Query: 191 IP 192
            P
Sbjct: 128 DP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L +N +    P  +++L  L+ L    N +  V  + + N++ +  +   +N + 
Sbjct: 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P     +L  +  L L    ++    +   N S    +K        + P TI +  
Sbjct: 367 DLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGG 421

Query: 122 NLEWLGLAYNNLTSSTSK 139
           +     + +N  + +   
Sbjct: 422 SYTEPDITWNLPSYTNEV 439

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            K +    + +       + + R +E L L    +  + +       T++ + +  N++ 
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI- 105

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             LP  +  ++P +  L LE N  S        N  KLT L +  N    +  DT     
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           +L+ L L+ N LT           L+    L   N+  N L          + +++E L 
Sbjct: 166 SLQNLQLSSNRLTH--------VDLSLIPSLFHANVSYNLLSTL------AIPIAVEELD 211

Query: 182 ITNCSIS 188
            ++ SI+
Sbjct: 212 ASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 6/173 (3%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           +   +++           E   L N + +    + +  + +A + +   ++++ L +  +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              + +       T++ L +  N      P    N   LT+L L  N  S L      N 
Sbjct: 82  -EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL 173
             L  L ++ NNL           +      L++L L  N L     S I +L
Sbjct: 141 PKLTTLSMSNNNLERIED-----DTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 7/173 (4%)

Query: 16  IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTV 75
           I   +        + + M             ++  KI+   N+++   LP+ +  S   V
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQV 71

Query: 76  EHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS 135
           E LNL   +       +   A  +  L +G N    L P    N+  L  L L  N+L+S
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 136 STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
               +       N  KL +L++  N L+     +    + SL+ L +++  ++
Sbjct: 132 LPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 9e-09
 Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 32/204 (15%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L  + +  N L   I  +      +L+ L L  N L  V    +  + +L    +  N L
Sbjct: 143 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198

Query: 61  FGSLPSRIGL----------------SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKL 104
             +L   I +                    +  L L+ N    T  + + N   L  + L
Sbjct: 199 -STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDL 255

Query: 105 GGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG 164
             N    ++      ++ LE L ++ N L       +          L+ L+L  N L  
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV------ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 165 FLPSSIGNLSMSLETLLITNCSIS 188
            +  +       LE L + + SI 
Sbjct: 309 HVERNQPQFD-RLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L +N L       + N   L  + L  N L  ++  P   M  L+ + + NN L 
Sbjct: 228 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 284

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            +L       +PT++ L+L  N     +  +     +L  L L  N+   L    +    
Sbjct: 285 VALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHH 339

Query: 122 NLEWLGLAYNNLTSS 136
            L+ L L++N+   +
Sbjct: 340 TLKNLTLSHNDWDCN 354

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 5e-11
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 72  LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN 131
           L  V HL+L  NR    +P ++     L +L+   N    +  D + NL  L+ L L  N
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN 518

Query: 132 NLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
            L       + +  L +C +L  LNL GN L
Sbjct: 519 RLQQ----SAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 21/170 (12%)

Query: 17  PHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVE 76
              +  L   +      + L  V       +  L+   L+ NS+              V 
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY-------ADVR 444

Query: 77  HLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136
            L+L       T+   +     +T L L  N     +P  +  LR LE L  + N L + 
Sbjct: 445 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN- 500

Query: 137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS--MSLETLLITN 184
                 +  +AN  +L+ L L  N L     ++I  L     L  L +  
Sbjct: 501 ------VDGVANLPRLQELLLCNNRLQQS--AAIQPLVSCPRLVLLNLQG 542

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 10/164 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL--VGVVSAPIFNMSTLKIIILINNS 59
              +    N L   +     +L  LE L L MN L  +  ++     M +L+ + +  NS
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           +             ++  LN+  N  + TI   +    ++ +L L  N    + P  +  
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVK 442

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           L  L+ L +A N L S                L+ + L  NP D
Sbjct: 443 LEALQELNVASNQLKSVPD-----GIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 7/181 (3%)

Query: 22  NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIIL----INNSLFGSLPSRIGLSLPTVEH 77
               +   ++    L G +    F+ S   +  L    + + +FG   S I      +  
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 78  LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137
            N  ++          +  S    L    N  +  + +  G+L  LE L L  N L   +
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIST 197
                 + +   K L+ L++  N +         + + SL +L +++  ++  I + +  
Sbjct: 365 KIAEMTTQM---KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421

Query: 198 K 198
           +
Sbjct: 422 R 422

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 10/125 (8%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
                LN+  N  S    S I + SKL +L +  N    L        + LE+L L++N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF-LPSSIGNLSMSLETLLITNCSISGNI 191
           L      +S          L+ L+L  N  D   +    GN+S  L+ L ++   +  + 
Sbjct: 81  LVK----ISC----HPTVNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEKSS 131

Query: 192 PQAIS 196
              I+
Sbjct: 132 VLPIA 136

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 2   LKGIYLGYNKLHGEIPH--EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           LK + L +N     +P   E  N+  L+ L L   +L      PI +++  K+++++  +
Sbjct: 92  LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKL---------GGNTFS 110
                       L      +L +   +      I + S  T+  L           N  S
Sbjct: 151 YGEKED---PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207

Query: 111 GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI 170
             +        N +   L  NN+ ++ +    +  L     +   ++    L G L    
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

Query: 171 GNLSM-SLETLLITNCSI 187
            + S  SL+ L I     
Sbjct: 268 FDYSGTSLKALSIHQVVS 285

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 10/205 (4%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
              + +  N +      +I +L  L  L +  N +  +  +       L+ + L +N L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL- 81

Query: 62  GSLPSRIGLSLPTVEHLNLELNRF-SGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
             +          ++HL+L  N F +  I     N S+L  L L            I +L
Sbjct: 82  VKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR-SLNLIGNPLDGFLPSSIGNLSMSLET 179
              + L +                 L +       +    N    F+         +LE 
Sbjct: 139 NISKVLLVLGETYGEKED----PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 180 LLITNCSISGNIPQAISTKYLFQNN 204
             I            +S     Q N
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTN 219

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 8e-11
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 2   LKGIYLGYNKLH-GEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS 59
           +  + LG N L    I +     ++ L  + +   N+  +   P     +L  + L  N 
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNK 203

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           +   + +     L  +  L L  N  S     S+ N   L  L L  N     +P  + +
Sbjct: 204 I-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 120 LRNLEWLGLAYNNLTS-STSKLSFLSSLANCKKLRSLNLIGNPL 162
            + ++ + L  NN+++  ++                ++L  NP+
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 36/191 (18%), Positives = 77/191 (40%), Gaps = 19/191 (9%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNL-VGVVSAPIF-NMSTLKIIILINN 58
           L+ + +  N++  ++   +   L  +  + LG N L    +    F  M  L  I + + 
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 59  SLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG 118
           ++  ++P  +    P++  L+L+ N+ +    +S+   + L  L L  N+ S +   ++ 
Sbjct: 182 NI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL-----DGFLPSSIGNL 173
           N  +L  L L  N L            LA+ K ++ + L  N +     + F P      
Sbjct: 238 NTPHLRELHLNNNKLVKVP------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 174 SMSLETLLITN 184
             S   + + +
Sbjct: 292 KASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ +      L  ++P ++    +   L L  N +  +      N+  L  +ILINN + 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI- 88

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             +       L  +E L L  N+    +P  +     L  L++  N  + +       L 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 122 NLEWLGLAYNNLTSST-SKLSFLSSLANCKKLRSLNLIGNPL---DGFLPSSIGNLSMS 176
            +  + L  N L SS     +F       KKL  + +    +      LP S+  L + 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAF----QGMKKLSYIRIADTNITTIPQGLPPSLTELHLD 200

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 14/165 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  I +    +   IP  +    +L  L L  N +  V +A +  ++ L  + L  NS+ 
Sbjct: 173 LSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI- 228

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG--- 118
            ++ +    + P +  L+L  N+    +P  + +   + ++ L  N  S +  +      
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 119 ---NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN 160
                 +   + L  N +     + S    +       ++ L   
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCV---YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
           P    L+L+ N+ +        N   L  L L  N  S + P     L  LE L L+ N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
           L     K+         K L+ L +  N +     S    L+  +  +
Sbjct: 112 LKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLN-QMIVV 150

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-10
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 12/184 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            K +    + +       + + R +E L L    +  + +       T++ + +  N++ 
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI- 111

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             LP  +  ++P +  L LE N  S        N  KLT L +  N    +  DT     
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 122 NLEWLGLAYNNLTS---------STSKLSF--LSSLANCKKLRSLNLIGNPLDGFLPSSI 170
           +L+ L L+ N LT            + +S+  LS+LA    +  L+   N ++       
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231

Query: 171 GNLS 174
             L+
Sbjct: 232 VELT 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 7/176 (3%)

Query: 13  HGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSL 72
           +  I   +        + + M             ++  KI+   N+++   LP+ +  S 
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSF 74

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
             VE LNL   +       +   A  +  L +G N    L P    N+  L  L L  N+
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
           L+S    +       N  KL +L++  N L+     +    + SL+ L +++  ++
Sbjct: 135 LSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 22/187 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + L  N+L   +   ++ + +L    +  N L     + +     ++ +   +NS+ 
Sbjct: 173 LQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSI- 223

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             +   + + L     L L+ N    T  + + N   L  + L  N    ++      ++
Sbjct: 224 NVVRGPVNVEL---TILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            LE L ++ N L +                L+ L+L  N L   +  +       LE L 
Sbjct: 279 RLERLYISNNRLVALN------LYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLY 330

Query: 182 ITNCSIS 188
           + + SI 
Sbjct: 331 LDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L +N L  +    + N   L  + L  N L  ++  P   M  L+ + + NN L 
Sbjct: 234 LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL- 290

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            +L       +PT++ L+L  N     +  +     +L  L L  N+   L    +    
Sbjct: 291 VALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHH 345

Query: 122 NLEWLGLAYNNLT 134
            L+ L L++N+  
Sbjct: 346 TLKNLTLSHNDWD 358

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 25/183 (13%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  + +  N L   +P   A+L  L+A     +N +  +     ++  L    + NN L 
Sbjct: 82  ITVLEITQNALI-SLPELPASLEYLDAC----DNRLSTLPELPASLKHLD---VDNNQL- 132

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             LP    L    +E++N + N+ +  +P   T+   L +L +  N  + L P+   +L 
Sbjct: 133 TMLPELPAL----LEYINADNNQLT-MLPELPTS---LEVLSVRNNQLTFL-PELPESLE 183

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
               L ++ N L S  +           +         N +   +P +I +L     T++
Sbjct: 184 ---ALDVSTNLLESLPAVPVRNHHSE--ETEIFFRCRENRI-THIPENILSLD-PTCTII 236

Query: 182 ITN 184
           + +
Sbjct: 237 LED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           LK + +  N+L   +P   A L  +       N L  +   P    ++L+++ + NN L 
Sbjct: 122 LKHLDVDNNQLT-MLPELPALLEYIN---ADNNQLTMLPELP----TSLEVLSVRNNQL- 172

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLT----LLKLGGNTFSGLIPDTI 117
             LP        ++E L++  N    ++P+               +   N  + + P+ I
Sbjct: 173 TFLPE----LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHI-PENI 226

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
            +L     + L  N L+S   +        +  +  +      P   F  S     ++  
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRE--------SLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 178 ETLLITNCSISGNIPQAIST 197
                       N    +S 
Sbjct: 279 PLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 20/159 (12%)

Query: 16  IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPT- 74
           I   I N  +L   +   N + G  +         +   L   +      S +   L   
Sbjct: 3   IMLPINNNFSLSQNSF-YNTISGTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLINQ 60

Query: 75  VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT 134
              L L     S ++P ++    ++T+L++  N    L P+   +L  L+      N L+
Sbjct: 61  FSELQLNRLNLS-SLPDNL--PPQITVLEITQNALISL-PELPASLEYLD---ACDNRLS 113

Query: 135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNL 173
           +     +          L+ L++  N L   LP     L
Sbjct: 114 TLPELPA---------SLKHLDVDNNQLT-MLPELPALL 142

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 14/171 (8%)

Query: 19  EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL 78
             A + +L  + L   N+  +    I     +K + + N       P      L  +E L
Sbjct: 39  TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPIS---GLSNLERL 93

Query: 79  NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS 138
            +     +     +++  + LTLL +  +     I   I  L  +  + L+YN   +   
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-- 151

Query: 139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISG 189
               +  L    +L+SLN+  + +  +    I +    L  L   + +I G
Sbjct: 152 ----IMPLKTLPELKSLNIQFDGVHDY--RGIEDFP-KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +    +  +    ++ L +L  L +  +     +   I  +  +  I L  N   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 62  GSLPSRIGLS-LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGL 112
             +     L  LP ++ LN++ +         I +  KL  L     T  G 
Sbjct: 150 TDIM---PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGK 196

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 6e-10
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 25/204 (12%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  I    + +   +   I  L N+  L L  N L  +   P+ N+  L  + L  N + 
Sbjct: 45  IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKI- 99

Query: 62  GSLPSRI-GLS-LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
                 +  L  L  ++ L+LE N  S  I + + +  +L  L LG N  + +    +  
Sbjct: 100 ----KDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV--LSR 151

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L  L+ L L  N ++        +  LA   KL++L L  N +      ++  L  +L+ 
Sbjct: 152 LTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYLSKNHISDL--RALAGLK-NLDV 201

Query: 180 LLITNCSISGNIPQAISTKYLFQN 203
           L + +           S   +   
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNT 225

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 23/171 (13%)

Query: 20  IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI-GLS-LPTVEH 77
                      L   ++   V      ++++  II  N+ +       + G+  LP V  
Sbjct: 17  DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTK 69

Query: 78  LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137
           L L  N+ +      +TN   L  L L  N    L    + +L+ L+ L L +N ++   
Sbjct: 70  LFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISD-- 123

Query: 138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
                ++ L +  +L SL L  N +     + +  L+  L+TL + +  IS
Sbjct: 124 -----INGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQIS 166

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 10/164 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL--VGVVSAPIFNMSTLKIIILINNS 59
              +    N     +    + L+ L+ L L  N L     V+    NMS+L+ + +  NS
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           L      R      ++  LNL  N  +G++   +    K+ +L L  N    + P  + +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTH 471

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           L+ L+ L +A N L S                L+ + L  NP D
Sbjct: 472 LQALQELNVASNQLKSVPD-----GVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
           P  + L+L  N  S      I+  S+L +L+L  N    L        ++LE+L +++N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF-LPSSIGNLSMSLETL 180
           L +    +S          LR L+L  N  D   +    GNL+  L  L
Sbjct: 112 LQN----ISC----CPMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFL 151

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 10/160 (6%)

Query: 6   YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFN-MSTLKIIILINNSLFGSL 64
            L    L          L  L  L L  N L   +SA +F+ ++ L  + L NN L  SL
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL-ASL 98

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNLRNL 123
           P  +   L  ++ L L  N+   ++PS +    +KL  L+L  N    +       L NL
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 124 EWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           + L L+ N L S         +     KL+++ L GN  D
Sbjct: 158 QTLSLSTNQLQSVPH-----GAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 63  SLPSRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
           S+PS I    P   E L+L+    +    ++    +KLT L L  N    L      +L 
Sbjct: 28  SVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 122 NLEWLGLAYNNLTS 135
            L  LGLA N L S
Sbjct: 84  ELGTLGLANNQLAS 97

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 16/167 (9%)

Query: 5   IYLGYNKLHGEIPHEIA--NLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLF 61
           + L +N L   +  E     L NL +L L  N+L   +S+  F  +  L+ + L +N L 
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHL- 100

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGN- 119
            +L   +   L  +E L L  N     +  +   + ++L  L L  N  S    + I + 
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 120 --LRNLEWLGLAYNNLTS-STSKLSFLSSLANCKKLRSLNLIGNPLD 163
             L  L  L L+ N L     + L  L +         L L  NPL+
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAW----VKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 73  PTVEHLNLELNRFSGTIPSSIT--NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY 130
                L+L  N  S  + +  T    + L  L L  N  + +  +    + NL +L L+ 
Sbjct: 39  SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 131 NNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
           N+L +           ++ + L  L L  N +     ++  +++  L+ L ++   IS
Sbjct: 98  NHLHTLDE-----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQIS 149

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 8/160 (5%)

Query: 25  NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84
           ++  + L +N++  +       +  L+ + +   +    + +     L ++  L L+ N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 85  FSGTIPSSI-TNASKLTLLKLGGN--TFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS 141
           F   + +      + L +L L       + L  +    L +LE L L  NN+      + 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK----IQ 145

Query: 142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
             S   N ++   L+L  N +       + N      TLL
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 15/205 (7%)

Query: 5   IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGS 63
           + L  N +        + L++L+ L +       V+    F  +S+L I+ L  N     
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQ 93

Query: 64  LPSRIGLSLPTVEHLNLELNRF-SGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTI-GNL 120
           L +     L  +E L L         +  +     + L +L L  N    + P +   N+
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS------ 174
           R    L L +N + S   +   L +    K    L L    L       +G         
Sbjct: 154 RRFHVLDLTFNKVKSICEED--LLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 175 -MSLETLLITNCSISGNIPQAISTK 198
             S+ TL ++      ++ +     
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDA 235

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 12/199 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
           L+ + +        I +     L +L  L L  N  +  +    F  ++ L+++ L   +
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCN 114

Query: 60  LFGS-LPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTI 117
           L G+ L       L ++E L L  N      P+S   N  +  +L L  N    +  + +
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174

Query: 118 GNL--RNLEWLGLAYNNLTS---STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN 172
            N   ++   L L+   L              +      + +L+L GN     +     +
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

Query: 173 L--SMSLETLLITNCSISG 189
                 +++L+++N    G
Sbjct: 235 AIAGTKIQSLILSNSYNMG 253

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 5/134 (3%)

Query: 48  STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGG 106
           + +  + L  NS+   L       L  ++ L +E       I ++     S L +LKL  
Sbjct: 30  AHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 107 NTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL 166
           N F  L       L NLE L L   NL  +    +F   L +   L  L L  N +    
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS---LEMLVLRDNNIKKIQ 145

Query: 167 PSSIGNLSMSLETL 180
           P+S          L
Sbjct: 146 PASFFLNMRRFHVL 159

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 22/198 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEAL-ALGMNNLVGVVSAPIFN-------------- 46
           +  + L  N     +     +      + +L ++N   + S+                  
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273

Query: 47  MSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGG 106
            S +K   L  + +F +L   +      +E L L  N  +    ++    + L  L L  
Sbjct: 274 ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 107 NTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFL 166
           N    +      NL  LE L L+YN++ +   +     S      L+ L L  N L    
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-----SFLGLPNLKELALDTNQLKSVP 387

Query: 167 PSSIGNLSMSLETLLITN 184
                 L+ SL+ + +  
Sbjct: 388 DGIFDRLT-SLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           +K   L  +K+   +   + ++  +LE L L  N +  +     + ++ L  + L  N L
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
            GS+ SR+  +L  +E L+L  N        S      L  L L  N    +       L
Sbjct: 336 -GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSS 145
            +L+ + L  N    S  ++ +LS 
Sbjct: 395 TSLQKIWLHTNPWDCSCPRIDYLSR 419

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 13/159 (8%)

Query: 6   YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSL 64
           +L  N L+      +     L  L L    L       +   +  L  + L +N L  SL
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQL-QSL 92

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNLRNL 123
           P  +G +LP +  L++  NR + ++P        +L  L L GN    L P  +     L
Sbjct: 93  PL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 124 EWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
           E L LA NNLT   +       L   + L +L L  N L
Sbjct: 151 EKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 12/176 (6%)

Query: 9   YNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI 68
             +    +P ++   ++   L L  N L     A +   + L  + L    L   L   +
Sbjct: 18  DKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQ--V 72

Query: 69  GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128
             +LP +  L+L  N+   ++P        LT+L +  N  + L    +  L  L+ L L
Sbjct: 73  DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 129 AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITN 184
             N L +    L  L+       L  L+L  N L       +  L  +L+TLL+  
Sbjct: 132 KGNELKTLPPGL--LTPTPK---LEKLSLANNNLTELPAGLLNGLE-NLDTLLLQE 181

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 29/182 (15%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+      + L  E+P E  N+++        +               + +  L +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD- 70

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
                           L L     S ++P    +   L  L    N+ + L P+   +L+
Sbjct: 71  -----------RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTEL-PELPQSLK 114

Query: 122 NLEWLGLAYNNLTSSTS----------KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG 171
           +L         L+              +L  L  L N   L+ +++  N L   LP    
Sbjct: 115 SLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP 173

Query: 172 NL 173
           +L
Sbjct: 174 SL 175

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 23/180 (12%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ I  G N+L  E   E+ NL  L A+    N+L  +         +L+ I+  NN L 
Sbjct: 175 LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNIL- 227

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
                 +  +LP +  +  + N    T+P    +   L +           +P+   +L 
Sbjct: 228 -EELPELQ-NLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLT 280

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLAN--------CKKLRSLNLIGNPLDGFLPSSIGNL 173
            L+     ++ L+     L +L++ +N           L  LN+  N L   LP+    L
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL 339

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 32/182 (17%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L+ + +  N L  ++P    +L  L+      + L  +          L  +   +N + 
Sbjct: 259 LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI- 309

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
                 +    P++E LN+  N+    +P+       L  L    N  + + P+   NL+
Sbjct: 310 ----RSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAEV-PELPQNLK 360

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSL----------ANCKKLRSLNLIGNPLDGFLPSSIG 171
            L    + YN L         +  L             + L+ L++  NPL    P    
Sbjct: 361 QLH---VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPE 416

Query: 172 NL 173
           ++
Sbjct: 417 SV 418

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 6e-09
 Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 14/168 (8%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
           L  + L  N +   +     + L +L+ L     NL  + + PI ++ TLK + + +N +
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 61  FGSLPS-RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL----LKLGGNTFSGLIPD 115
             S        +L  +EHL+L  N+      + +    ++ L    L L  N  + + P 
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 116 TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
               +  L+ L L  N L S    +           L+ + L  NP D
Sbjct: 196 AFKEI-RLKELALDTNQLKSVPDGI-----FDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 11/187 (5%)

Query: 6   YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSL 64
            L +N L     +   +   L+ L L    +   +    + ++S L  +IL  N +  SL
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI-QSL 91

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLI-PDTIGNLRN 122
                  L +++ L       + ++ +    +   L  L +  N       P+   NL N
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 123 LEWLGLAYNNLTS-STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           LE L L+ N + S   + L  L  +       SL+L  NP++   P +   +   L+ L 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPL--LNLSLDLSLNPMNFIQPGAFKEI--RLKELA 206

Query: 182 ITNCSIS 188
           +    + 
Sbjct: 207 LDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 25  NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84
           + + L L  N L  + S   F+   L+++ L    +  ++      SL  +  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 85  FSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL 143
              ++     +  S L  L       + L    IG+L+ L+ L +A+N + S      F 
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF- 145

Query: 144 SSLANCKKLRSLNLIGNPL 162
           S+L N   L  L+L  N +
Sbjct: 146 SNLTN---LEHLDLSSNKI 161

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 63  SLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN 122
            +P  +     + ++L+L  N        S  +  +L +L L       +      +L +
Sbjct: 21  KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 123 LEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
           L  L L  N + S           +    L+ L  +   L       IG+L  +L+ L
Sbjct: 78  LSTLILTGNPIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLK-TLKEL 129

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEIA-NLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
           L+ +      L   + +    +L+ L+ L +  N +        F N++ L+ + L +N 
Sbjct: 102 LQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 60  LFGSLPSRIGLSLPTVEHLNLEL----NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPD 115
           +  S+       L  +  LNL L    N  +  I        +L  L L  N    +   
Sbjct: 161 I-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 116 TIGNLRNLEWLGLAYNNLTSSTSKLSFLS 144
               L +L+ + L  N    S  ++ +LS
Sbjct: 219 IFDRLTSLQKIWLHTNPWDCSCPRIDYLS 247

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 25  NLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN 83
               L L  N    + +  IF  +  L+ I   NN +   +          V  + L  N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSN 91

Query: 84  RFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSF 142
           R    +   +      L  L L  N  + +  D+   L ++  L L  N +T+       
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---- 146

Query: 143 LSSLANCKKLRSLNLIGNPLD 163
             +      L +LNL+ NP +
Sbjct: 147 -GAFDTLHSLSTLNLLANPFN 166

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 28/168 (16%), Positives = 46/168 (27%), Gaps = 18/168 (10%)

Query: 7   LGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP 65
              N L   I  E   NL NL+ L +    +  +      +     ++ + +N    ++ 
Sbjct: 87  EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 66  SRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
               + L      L L  N       S+        L     N    L  D         
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 125 WLGLAYNNLTS---------------STSKLSFLSSLANCKKLRSLNL 157
            L ++   + S               ST  L  L +L     L   +L
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 11/191 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
              +     KL        +   +LE + +  N+++ V+ A +F N+  L  I +   + 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTI-- 117
              +      +LP +++L +        +P     ++ +  LL +  N     I      
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSL 177
           G       L L  N +    +     S+    +         N L+          S   
Sbjct: 151 GLSFESVILWLNKNGIQEIHN-----SAFNGTQLDELNLSDNNNLEELPNDVFHGAS-GP 204

Query: 178 ETLLITNCSIS 188
             L I+   I 
Sbjct: 205 VILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 63  SLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNLR 121
            +PS +         L   L +       + +    L  +++  N    +I  D   NL 
Sbjct: 23  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSS--LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
            L  + +   N       L +++     N   L+ L +    +         +    +  
Sbjct: 80  KLHEIRIEKAN------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 180 LLITNCSIS 188
            +  N +I 
Sbjct: 134 DIQDNINIH 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSL 60
            + + L    L     H  +NL N+  + + ++  +  + +  F N+S +  I + N   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIP--SSITNASKLTLLKLGGNTFSGLIP-DTI 117
              +       LP ++ L +         P  + + +     +L++  N +   IP +  
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 118 GNLRN-LEWLGLAYNNLTSSTSKLSFLSSLA-NCKKLRSLNLIGNPLDGFLPSSI-GNLS 174
             L N    L L  N  TS       +   A N  KL ++ L  N     +     G + 
Sbjct: 152 QGLCNETLTLKLYNNGFTS-------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 175 MSLETLLITNCSIS 188
                L ++  S++
Sbjct: 205 SGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAP-IFNMSTLKIIILINNS 59
           +  I +   +    I  +    L  L+ L +    L        +++     I+ + +N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 60  LFGSLPSRIGLSLPTV-EHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI- 117
              S+P      L      L L  N F+ ++     N +KL  + L  N +  +I     
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

Query: 118 -GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157
            G       L ++  ++T+  SK      L + K+L + N 
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKG-----LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 6/168 (3%)

Query: 23  LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL 82
             + + L L   +L  + S    N+  +  I +  +     L S    +L  V H+ +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 83  NRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDT-IGNLRNLEWLGLAYNNLTSSTSKL 140
            R    I          L  L +           T + +      L +  N   +S    
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 141 SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
           +F   L N  +  +L L  N     +     N +      L  N  ++
Sbjct: 150 AF-QGLCN--ETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLT 193

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 72  LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN-TFSGLIPDTIGNLRNLEWLGLAY 130
            P+ + L L           + +N   ++ + +  + T   L   +  NL  +  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 131 NNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN 190
               +     +          L+ L +    L  F   +    +     L IT+     +
Sbjct: 90  TRNLTYIDPDAL----KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 191 IP 192
           IP
Sbjct: 146 IP 147

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 63  SLPSRIGLSLPT-VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            LP  I    P  V  L L+ N+F+  +P  ++N   LTL+ L  N  S L   +  N+ 
Sbjct: 24  VLPKGI----PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 122 NLEWLGLAYNNLTS----STSKLSFLSSLA---------------NCKKLRSLNLIGNPL 162
            L  L L+YN L      +   L  L  L+               +   L  L +  NPL
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

Query: 163 D 163
            
Sbjct: 139 Y 139

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 12/120 (10%)

Query: 46  NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLK-- 103
             S +K ++L N+         +      +E L+      +     SI N  KL  LK  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKL 69

Query: 104 -LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
            L  N  SG +        NL  L L+ N +      LS +  L   + L+SL+L    +
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD----LSTIEPLKKLENLKSLDLFNCEV 125

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 22/201 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV------SAPIFNMSTLKIIIL 55
           L+ + L   ++ G  P  +      +   L + N+              +    LK++ +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 56  INNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTI-------PSSITNASKLTLLKLGGNT 108
                  +         P +  L+L  N   G         P        L L   G  T
Sbjct: 157 AQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 109 FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS 168
            SG+          L+ L L++N+L  +    S         +L SLNL    L      
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD----WPSQLNSLNLSFTGLKQVPK- 270

Query: 169 SIGNLSMSLETLLITNCSISG 189
               L   L  L ++   +  
Sbjct: 271 ---GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 17/168 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG----VVSAPIFNMSTLKIIILIN 57
           LK + +           ++     L  L L  N  +G    + +       TL+++ L N
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 58  NSL--FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIP 114
             +     + S +  +   ++ L+L  N       +      S+L  L L       +  
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 115 DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
                   L  L L+YN L           S     ++ +L+L GNP 
Sbjct: 271 GL---PAKLSVLDLSYNRLDR-------NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 12  LHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLS 71
           +    P +   L+ L     GM    GV SA       L+ + L +NSL  +  +     
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 72  LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN 131
              +  LNL        +P  +   +KL++L L  N        +   L  +  L L  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGN 306

Query: 132 NLTSS 136
               S
Sbjct: 307 PFLDS 311

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 21/203 (10%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  + L  N L  +    IA L++++ L L    +  V   P+  +S L+++ L  N + 
Sbjct: 87  ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT 142

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P      L  +++L++   + S    + + N SKLT LK   N  S + P  + +L 
Sbjct: 143 NISPLA---GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           NL  + L  N ++        +S LAN   L  + L    +         NL +      
Sbjct: 196 NLIEVHLKNNQISD-------VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

Query: 182 ITNCSISGNIPQAISTKYLFQNN 204
            +   I+   P  IS    + + 
Sbjct: 249 PSGAPIA---PATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 21/187 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  +      +   I   +  L NL  L L  N +  +  AP+ N++ +  + L  N L 
Sbjct: 43  ITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPL- 97

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
               S I   L +++ L+L   + +   P  +   S L +L L  N  + + P  +  L 
Sbjct: 98  -KNVSAIA-GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLT 151

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           NL++L +    ++        L+ LAN  KL +L    N +     S + +L  +L  + 
Sbjct: 152 NLQYLSIGNAQVSD-------LTPLANLSKLTTLKADDNKISDI--SPLASLP-NLIEVH 201

Query: 182 ITNCSIS 188
           + N  IS
Sbjct: 202 LKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 35/188 (18%)

Query: 20  IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL-----FGSLPSRIGL---- 70
              L N   +A G +N+   V     ++  +  +      +        L + IGL    
Sbjct: 15  DPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 71  ----------SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
                     +L  +  L L  N       S+I     +  L L     + + P  +  L
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL 180
            NL+ L L  N +T+       +S LA    L+ L++    +     + + NLS  L TL
Sbjct: 129 SNLQVLYLDLNQITN-------ISPLAGLTNLQYLSIGNAQVSDL--TPLANLS-KLTTL 178

Query: 181 LITNCSIS 188
              +  IS
Sbjct: 179 KADDNKIS 186

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 46  NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLK-- 103
           N    + + L    +   +   +G +L   + ++   N         +     L  LK  
Sbjct: 17  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-----KLDGFPLLRRLKTL 69

Query: 104 -LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
            +  N    +       L +L  L L  N+L      L  L  LA+ K L  L ++ NP+
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVE----LGDLDPLASLKSLTYLCILRNPV 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 12/120 (10%)

Query: 46  NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLK-- 103
             + ++ ++L N          +      +E L+L           S++N  KL  LK  
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-----SVSNLPKLPKLKKL 76

Query: 104 -LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
            L  N   G +      L NL  L L+ N L      +S L  L   + L+SL+L    +
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD----ISTLEPLKKLECLKSLDLFNCEV 132

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 71  SLPTVEHLNLELNRFSGTIPS-SITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA 129
               +  L +E  +    +    +    +L  L +  +    + PD       L  L L+
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD 163
           +N L S + K     S      L+ L L GNPL 
Sbjct: 89  FNALESLSWKTVQGLS------LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 82  LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPD-TIGNLRNLEWLGLAYNNLTSSTSKL 140
               +      +  A  LT L +        +    +  L  L  L +  + L    +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74

Query: 141 SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           +F        +L  LNL  N L+     ++  LS+ 
Sbjct: 75  AF----HFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           ++      + +  +    +    NL+ L L  N +  +  +P+ +++ L+ + +  N L 
Sbjct: 43  VQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRL- 97

Query: 62  GSLPSRI-GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
                 + G+    +  L L+ N    T   S+ +   L +L +  N    ++   +G L
Sbjct: 98  ----KNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFL 149

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
             LE L L  N +T+          L   KK+  ++L G   
Sbjct: 150 SKLEVLDLHGNEITN-------TGGLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 24/171 (14%)

Query: 20  IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI-GLS-LPTVEH 77
              L N     LG  ++  +V      +S ++     N+++       + G+     ++ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI-----QSLAGMQFFTNLKE 67

Query: 78  LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137
           L+L  N+ S    S + + +KL  L +  N    L          L  L L  N L    
Sbjct: 68  LHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRD-- 120

Query: 138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
                  SL + K L  L++  N L       +G LS  LE L +    I+
Sbjct: 121 -----TDSLIHLKNLEILSIRNNKLKSI--VMLGFLS-KLEVLDLHGNEIT 163

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 25/205 (12%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  ++L  NKL    P  +ANL+NL  L L  N +  +    + ++  LK + L +N + 
Sbjct: 70  VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI- 124

Query: 62  GSLPSRI-GLS-LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
               S I GL  LP +E L L  N+   T  + ++  +KL  L L  N  S ++P  +  
Sbjct: 125 ----SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAG 176

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L  L+ L L+ N+++        L +LA  K L  L L          +   NL +    
Sbjct: 177 LTKLQNLYLSKNHISD-------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 180 LLITNCSISGNIPQAISTKYLFQNN 204
                  ++   P+ IS    ++  
Sbjct: 230 KNTDGSLVT---PEIISDDGDYEKP 251

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           +  I    + +   +   I  L N+  L L  N L  +   P+ N+  L  + L  N + 
Sbjct: 48  IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKV- 102

Query: 62  GSLPSRI-GLS-LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
                 +  L  L  ++ L+LE N    +  + + +  +L  L LG N  + +    +  
Sbjct: 103 ----KDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDI--TVLSR 154

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET 179
           L  L+ L L  N ++        +  LA   KL++L L  N +      ++  L  +L+ 
Sbjct: 155 LTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYLSKNHISDL--RALAGLK-NLDV 204

Query: 180 LLITNCSIS 188
           L + +    
Sbjct: 205 LELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 23/171 (13%)

Query: 20  IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI-GLS-LPTVEH 77
                      L   ++   V      ++++  II  N+ +       + G+  LP V  
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTK 72

Query: 78  LNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST 137
           L L  N+ +      + N   L  L L  N    L    + +L+ L+ L L +N ++   
Sbjct: 73  LFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD-- 126

Query: 138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS 188
                ++ L +  +L SL L  N +     + +  L+  L+TL + +  IS
Sbjct: 127 -----INGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQIS 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 35/156 (22%), Positives = 58/156 (37%), Gaps = 15/156 (9%)

Query: 10  NKLHGEIPHEIANLRNLEALALGMN-NLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI 68
           + +      +       E + L      +  + A +  +   K + L  N++      +I
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-----EKI 63

Query: 69  -GLS-LPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL 126
             LS +  +  L+L  N     I +    A  L  L +  N  + L    I  L NL  L
Sbjct: 64  SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVL 120

Query: 127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
            ++ N +T+       +  LA   KL  L L GNPL
Sbjct: 121 YMSNNKITN----WGEIDKLAALDKLEDLLLAGNPL 152

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
            T+  + LE N      P + +   KL  + L  N  S L PD    LR+L  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 133 LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIP 192
           +T     L     L     L+ L L  N ++     +  +L  +L  L + +  +   I 
Sbjct: 92  ITELPKSL--FEGLF---SLQLLLLNANKINCLRVDAFQDLH-NLNLLSLYDNKLQ-TIA 144

Query: 193 Q-------AISTKYLFQN 203
           +       AI T +L QN
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 25  NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR 84
           + + L L  N L  + S     ++ L+++ L +N L  +LP+ I   L  +E L +  N+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96

Query: 85  FSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS 135
               +P  +      L  L+L  N    L P    +L  L +L L YN L S
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 2   LKGIYLGYNKLHGEIPHEI-ANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNS 59
           L+ +++  NKL   +P  +   L NL  L L  N L  +    +F +++ L  + L  N 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNE 144

Query: 60  LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGN 119
           L  SLP  +   L +++ L L  N+       +    ++L  LKL  N    +      +
Sbjct: 145 L-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLS 144
           L  L+ L L  N    + + + +++
Sbjct: 204 LEKLKMLQLQENPWDCTCNGIIYMA 228

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 17/128 (13%), Positives = 53/128 (41%), Gaps = 14/128 (10%)

Query: 21  ANLRNLEALALGMNN--LVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI-----GLSLP 73
            NL++LE ++ G+ +  +  ++ + + N+  L + + + +  F    +           P
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 74  TVEHLNLELNRFSGTIPSSITNA---SKLTLLKLGGNTFSG----LIPDTIGNLRNLEWL 126
            ++ L +        +      +    +L  + +     +     L+ D +  +++L+++
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 127 GLAYNNLT 134
            + YN L+
Sbjct: 313 NMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 13  HGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLS- 71
             ++   +  +  L  L +   N + +          LK + +I+  L  S+   I  S 
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNNLSI---GKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 72  LPTVEHLNLELNRFSGTIPSSITNAS---------KLTLLKLGGNTFSGLIPDTIGN--- 119
           LP +E L L +          +              L  L +       ++ +       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
           L  LE + ++   LT   ++L  L  +   K L+ +N+  N L
Sbjct: 278 LPQLETMDISAGVLTDEGARL-LLDHVDKIKHLKFINMKYNYL 319

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 25/122 (20%)

Query: 63  SLPSRIGLSLPT-VEHLNLELNRFSGTIPSSI-TNASKLTLLKLGGNTFSGLIPDTIGNL 120
            +P  I    P     L L  N         +      L  L+L  N  +G+ P+     
Sbjct: 22  EIPRDI----PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 121 RNLEWLGLAYNNLTSSTS----KLSFLSSLA---------------NCKKLRSLNLIGNP 161
            +++ L L  N +   ++     L  L +L                +   L SLNL  NP
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137

Query: 162 LD 163
            +
Sbjct: 138 FN 139

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 6   YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFN-MSTLKIIILINNSLFGSL 64
           YL  N++    P    +L NL+ L LG N L   +   +F+ ++ L ++ L  N L   L
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-TVL 103

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
           PS +   L  ++ L +  N+ +  +P  I   + LT L L  N    +       L +L 
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 125 WLGLAYNN 132
              L + N
Sbjct: 163 HAYL-FGN 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.84
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.55
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.37
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.62
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.51

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.7e-29  Score=185.57  Aligned_cols=191  Identities=26%  Similarity=0.441  Sum_probs=120.7

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCC-CccEEEc
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLP-TVEHLNL   80 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l   80 (204)
                      |++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .++ +|++|++
T Consensus       103 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L  181 (313)
T 1ogq_A          103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTI  181 (313)
T ss_dssp             CSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEEC
T ss_pred             CCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEEC
Confidence            44555555555545555555555555555555555555555555555555555555555555555554 343 5555555


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+....+..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.+...+      ..+..+++|++|++++|
T Consensus       182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL------GKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG------GGCCCCTTCCEEECCSS
T ss_pred             cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec------CcccccCCCCEEECcCC
Confidence            55555544555555554 666666666666555666666777777777777665443      23566788888888888


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .+++.+|..+..++ +|++|++++|.+++.+|.. ..++.|+
T Consensus       255 ~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L~  294 (313)
T 1ogq_A          255 RIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             CCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGSC
T ss_pred             cccCcCChHHhcCc-CCCEEECcCCcccccCCCC-ccccccC
Confidence            88878888888887 8888888888888887775 5555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.1e-28  Score=183.65  Aligned_cols=191  Identities=24%  Similarity=0.298  Sum_probs=135.4

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC--------CCCC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG--------LSLP   73 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------~~~~   73 (204)
                      |++|++++|.+. .+|..++.+++|++|++++|.+. ..|..+..+++|++|++++|...+.+|..+.        ..++
T Consensus       106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~  183 (328)
T 4fcg_A          106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV  183 (328)
T ss_dssp             CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred             CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence            566666666666 66666666677777777776666 4455566667777777776665556665543        1266


Q ss_pred             CccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc
Q 047496           74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR  153 (204)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~  153 (204)
                      +|++|++++|.++ .+|..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.+....     +..+..+++|+
T Consensus       184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-----p~~~~~l~~L~  256 (328)
T 4fcg_A          184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-----PPIFGGRAPLK  256 (328)
T ss_dssp             TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-----CCCTTCCCCCC
T ss_pred             CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-----HHHhcCCCCCC
Confidence            7777777777776 666667777777777777777774 4556777777777777777665442     24677778888


Q ss_pred             EEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          154 SLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       154 ~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|+.+++++.++
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCT-TCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             EEECCCCCchhhcchhhhcCC-CCCEEeCCCCCchhhccHHHhhccCce
Confidence            888888887778888888887 888888888888888888888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=7.7e-28  Score=177.23  Aligned_cols=195  Identities=24%  Similarity=0.232  Sum_probs=168.6

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCc-ceeecCCccCCCCCCccEEE
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-LFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~   79 (204)
                      ++++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +. .+++..+..+++|++|+
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEE
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEE
Confidence            47899999999987666788999999999999999998888889999999999999997 65 56544445899999999


Q ss_pred             cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496           80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus        80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      +.+|.+....+..+..+++|++|++++|.+....+..++.+++|+.|++++|.+..++.     ..+..+++|++|++++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-----RAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCS
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-----HHhcCccccCEEECCC
Confidence            99999986667778899999999999999987766778999999999999999887753     4578889999999999


Q ss_pred             CcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          160 NPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |.+++..+..+..++ +|+.|++++|.+++..+..|..++.|+
T Consensus       187 n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          187 NRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             SCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             CcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccC
Confidence            999988888888888 999999999999987778888887765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.1e-28  Score=184.00  Aligned_cols=198  Identities=27%  Similarity=0.425  Sum_probs=131.9

Q ss_pred             cceEEccCCcccc--ccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496            2 LKGIYLGYNKLHG--EIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL   78 (204)
Q Consensus         2 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   78 (204)
                      ++.|+++++.+.+  .+|..++.+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L  130 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCCEE
Confidence            4566777776665  5666666677777777764 666666666666666666676666666655555554 56666666


Q ss_pred             EcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCC-CCcEEEccCccCCCC-cccc----------------
Q 047496           79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR-NLEWLGLAYNNLTSS-TSKL----------------  140 (204)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~-~~~~----------------  140 (204)
                      ++++|.+....|..+..+++|++|++++|.+++..|..+..++ .|+.|++++|.+... +..+                
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~  210 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence            6666666655566666666666666666666655555565555 566666666554421 1100                


Q ss_pred             -hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          141 -SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       141 -~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                       ..+..+..+++|++|++++|.+++..+. +..++ +|++|++++|.+++.+|..|..++.|+
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT-TCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC-CCCEEECcCCcccCcCChHHhcCcCCC
Confidence             1224567778888888888888755444 66666 899999999999999999999888775

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.7e-28  Score=181.25  Aligned_cols=190  Identities=22%  Similarity=0.322  Sum_probs=172.6

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +++.|++++|.+. .+|+.+..+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+. .+++|++|++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEEEC
Confidence            3688999999998 88888999999999999999999 66778899999999999999998 8888877 8999999999


Q ss_pred             CCCcCccCCCccccC---------CCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCC
Q 047496           81 ELNRFSGTIPSSITN---------ASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKK  151 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  151 (204)
                      ++|.....+|..+..         +++|++|++++|.++ .+|..++.+++|+.|++++|.+..++      ..+..+++
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~------~~l~~l~~  230 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALG------PAIHHLPK  230 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCC------GGGGGCTT
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCc------hhhccCCC
Confidence            998777677776654         999999999999998 67888999999999999999999876      46888999


Q ss_pred             ccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          152 LRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       152 L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..++.++.|+
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             CCEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCC
Confidence            99999999999989999999998 999999999999999999999998876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.6e-27  Score=196.68  Aligned_cols=129  Identities=36%  Similarity=0.612  Sum_probs=59.8

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+.+.+|..++.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|+++
T Consensus       420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~  498 (768)
T 3rgz_A          420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLS  498 (768)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECC
T ss_pred             CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEcc
Confidence            44555555555444454455555555555555554444444444444444444444444433443333 34444444444


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN  131 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  131 (204)
                      +|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus       499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            44444344444444444444444444444444444444444444444444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=3.5e-27  Score=194.68  Aligned_cols=195  Identities=34%  Similarity=0.557  Sum_probs=140.8

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus       443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L  521 (768)
T 3rgz_A          443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKL  521 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEEC
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEEC
Confidence            366777777777777777777777777777777777777777777777777777777777666666655 6777777777


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccc-------------------------------------------
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI-------------------------------------------  117 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-------------------------------------------  117 (204)
                      .+|.+.+..|..+..+++|++|++++|.+.+..|..+                                           
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS  601 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence            7777776677777777777777777776654444322                                           


Q ss_pred             ---------------------------cCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc
Q 047496          118 ---------------------------GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI  170 (204)
Q Consensus       118 ---------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  170 (204)
                                                 +.++.|+.|++++|.++...+     ..++.++.|+.|++++|.+++.+|..+
T Consensus       602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-----~~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-----KEIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-----GGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC-----HHHhccccCCEEeCcCCccCCCCChHH
Confidence                                       223556777777777764422     567777788888888888888888888


Q ss_pred             cccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          171 GNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       171 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ..++ +|+.||+++|.+++.+|..|+.++.|+
T Consensus       677 ~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          677 GDLR-GLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             GGCT-TCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hCCC-CCCEEECCCCcccCcCChHHhCCCCCC
Confidence            8877 788888888888888888888777664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.1e-25  Score=164.56  Aligned_cols=181  Identities=24%  Similarity=0.284  Sum_probs=117.0

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      +++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|++.
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECC
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECC
Confidence            566777777666444456666777777777777766655555666677777777777665 4555544466677777777


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..++.     ..+..+++|++|++++|.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-----GAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-----hHhccCCCcCEEECCCCc
Confidence            776664444556666777777777776665544556667777777777776666643     345666677777777777


Q ss_pred             CCCCCCccccccccCccEEEeecccccc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~  189 (204)
                      +++..+..+..++ +|+.|++++|++..
T Consensus       193 l~~~~~~~~~~l~-~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          193 LKRVPEGAFDSLE-KLKMLQLQENPWDC  219 (270)
T ss_dssp             CSCCCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred             CCcCCHHHhcccc-CCCEEEecCCCeeC
Confidence            7644444455555 67777777776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.4e-26  Score=178.55  Aligned_cols=199  Identities=19%  Similarity=0.195  Sum_probs=127.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEEC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEEC
Confidence            3678888888888777777888888888888888888777777888888888888888876 666665557888888888


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCc-ccccccccccCCCCCcEEEccCccCCCCcccc-----------------hh
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNT-FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-----------------SF  142 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------------~~  142 (204)
                      ++|.+....+..+..+++|++|+++++. +....+..+..+++|+.|++++|.+..++...                 ..
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  234 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR  234 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence            8887764444455666666666666532 22222234555555555555555554443100                 00


Q ss_pred             hhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      +..+.++++|++|++++|.+++..+..|..++ +|+.|++++|.+++..++.|..++.|
T Consensus       235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             cccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCC
Confidence            13455555566666666665555555555555 66666666666665555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.9e-25  Score=163.26  Aligned_cols=191  Identities=24%  Similarity=0.334  Sum_probs=166.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      .+.++++++.+. .+|..+.  +++++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++|++.
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            467899998888 5666554  68999999999999888888999999999999999997 7888777689999999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..++.     ..+..+++|++|++++|.
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-----GVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-----hHccCCcccceeEecCCc
Confidence            999985555667899999999999999998877889999999999999999988864     457889999999999999


Q ss_pred             CCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +++..+..|..++ +|++|++++|.+++..+..|..++.|+
T Consensus       169 l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          169 LKRVPEGAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             CSCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CcEeChhHhccCC-CcCEEECCCCcCCcCCHHHhccccCCC
Confidence            9976666788888 999999999999987777788777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=176.92  Aligned_cols=198  Identities=20%  Similarity=0.211  Sum_probs=118.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.++ .++...+..+++|++|++.
T Consensus        66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECC
T ss_pred             CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCC
Confidence            567777777777666667777777777777777777766667777777777777777776 5555544467777777777


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCc-ccccccccccCCCCCcEEEccCccCCCCcccc-----------------hhh
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNT-FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-----------------SFL  143 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------------~~~  143 (204)
                      +|.+....+..+..+++|++|+++++. +....+..+..+++|+.|++++|.+..++...                 ..+
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~  224 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP  224 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh
Confidence            777664444455566666666666532 22222234555555555555555555443100                 001


Q ss_pred             hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      ..+.++++|++|++++|.+++..+..|..++ +|+.|++++|.+++..++.|..++.|
T Consensus       225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             hhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCC
Confidence            3444555555555555555544455555555 56666666666665555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.2e-25  Score=164.83  Aligned_cols=136  Identities=22%  Similarity=0.254  Sum_probs=114.9

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence            3789999999998666668899999999999999999887778889999999999999987 445444448999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCccccc-ccccccCCCCCcEEEccCccCCCCc
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSST  137 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~  137 (204)
                      .+|.+....+..+..+++|++|++++|.+... .|..+..+++|+.|++++|.+...+
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence            99998855555688899999999999998764 4788999999999999999887764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.6e-25  Score=163.68  Aligned_cols=183  Identities=22%  Similarity=0.236  Sum_probs=159.4

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCcc-ccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-LVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      +|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+. .+++..+..+++|++|+
T Consensus        57 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEE
Confidence            47899999999997778899999999999999997 88777888999999999999999997 45444444899999999


Q ss_pred             cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496           80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus        80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      +++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+     ..+..+++|++|++++
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-----HAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCS
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-----hHccCcccccEeeCCC
Confidence            99999985555668899999999999999997666679999999999999999987633     5788899999999999


Q ss_pred             CcCCCCCCccccccccCccEEEeeccccccc
Q 047496          160 NPLDGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      |.+++..+..+..++ +|+.|++++|.+...
T Consensus       211 n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          211 NNLSALPTEALAPLR-ALQYLRLNDNPWVCD  240 (285)
T ss_dssp             SCCSCCCHHHHTTCT-TCCEEECCSSCEECS
T ss_pred             CcCCcCCHHHcccCc-ccCEEeccCCCccCC
Confidence            999976666688887 999999999998754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=8e-26  Score=176.44  Aligned_cols=84  Identities=26%  Similarity=0.344  Sum_probs=36.7

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCc--cccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSA--PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      |++|++++|.+.+..|..++.+++|++|++++|.+++..+.  .+..+++|++|++++|.+.+..|..++..+++|++|+
T Consensus        81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  160 (455)
T 3v47_A           81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD  160 (455)
T ss_dssp             CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred             CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence            44455555554444444444455555555555544432211  1444444444444444444222332222344444444


Q ss_pred             cCCCcC
Q 047496           80 LELNRF   85 (204)
Q Consensus        80 l~~~~~   85 (204)
                      +++|.+
T Consensus       161 L~~n~l  166 (455)
T 3v47_A          161 LTFNKV  166 (455)
T ss_dssp             CTTCCB
T ss_pred             CCCCcc
Confidence            444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.5e-25  Score=173.70  Aligned_cols=179  Identities=24%  Similarity=0.258  Sum_probs=133.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCc-------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR-------------   67 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------   67 (204)
                      +|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+. .++..             
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeC
Confidence            3677777777777666666777777777777777777666666666777777777777665 44433             


Q ss_pred             ------------cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCC
Q 047496           68 ------------IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS  135 (204)
Q Consensus        68 ------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  135 (204)
                                  .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL  256 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence                        2334555666666666655 333 36667788888888888887777888889999999999998877


Q ss_pred             CcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496          136 STSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       136 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      .+.     ..+.++++|++|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus       257 ~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np~~  303 (452)
T 3zyi_A          257 IER-----NAFDGLASLVELNLAHNNLSSLPHDLFTPLR-YLVELHLHHNPWN  303 (452)
T ss_dssp             ECT-----TTTTTCTTCCEEECCSSCCSCCCTTSSTTCT-TCCEEECCSSCEE
T ss_pred             ECH-----HHhcCCCCCCEEECCCCcCCccChHHhcccc-CCCEEEccCCCcC
Confidence            643     5788899999999999999976666777787 9999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=173.24  Aligned_cols=180  Identities=24%  Similarity=0.269  Sum_probs=130.1

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcce-------------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF-------------------   61 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------------   61 (204)
                      +|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++++|.+.                   
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            3567777777776555566667777777777777776665555666666666666666654                   


Q ss_pred             -----eecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496           62 -----GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        62 -----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                           +.++...+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence                 2233333334555666666666555 333 356677788888888888777777888888899999988888776


Q ss_pred             cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496          137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +.     ..+.++++|++|++++|.+++..+..+..++ +|+.|++++|.+.
T Consensus       247 ~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~Np~~  292 (440)
T 3zyj_A          247 ER-----NAFDNLQSLVEINLAHNNLTLLPHDLFTPLH-HLERIHLHHNPWN  292 (440)
T ss_dssp             CT-----TSSTTCTTCCEEECTTSCCCCCCTTTTSSCT-TCCEEECCSSCEE
T ss_pred             Ch-----hhhcCCCCCCEEECCCCCCCccChhHhcccc-CCCEEEcCCCCcc
Confidence            53     5788899999999999999977777777887 9999999999886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=5.9e-25  Score=163.33  Aligned_cols=181  Identities=20%  Similarity=0.250  Sum_probs=118.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCC-ccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS-APIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      |++|++++|.+. .++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus        80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l  157 (306)
T 2z66_A           80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKM  157 (306)
T ss_dssp             CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-TTCTTCCEEEC
T ss_pred             cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc-ccCcCCCEEEC
Confidence            455566665555 344456666666777776666665543 456666777777777776653333333 36677777777


Q ss_pred             CCCcCcc-CCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496           81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      ++|.+.. ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...+.     ..+..+++|++|++++
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-----FPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-----GGGTTCTTCCEEECTT
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-----hhccCcccCCEeECCC
Confidence            7777653 356666777777777777777776656667777777777777777766543     3456677777777777


Q ss_pred             CcCCCCCCccccccccCccEEEeecccccc
Q 047496          160 NPLDGFLPSSIGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  189 (204)
                      |.+++..+..+..++.+|++|++++|.++.
T Consensus       233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          233 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             SCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            777766666666664467777777777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.3e-25  Score=166.86  Aligned_cols=191  Identities=23%  Similarity=0.250  Sum_probs=120.4

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccC--Ccc-----------------------ccCCCccceeeec
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV--SAP-----------------------IFNMSTLKIIILI   56 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~-----------------------~~~l~~L~~L~l~   56 (204)
                      +++|++++|.+....+..|..+++|++|++++|.+....  +..                       +..+++|++|+++
T Consensus        30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~  109 (306)
T 2z66_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ  109 (306)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred             CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECC
Confidence            566777777666333334566667777777666655321  222                       3445555555555


Q ss_pred             CCcceeecCC-ccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccc-cccccccCCCCCcEEEccCccCC
Q 047496           57 NNSLFGSLPS-RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLT  134 (204)
Q Consensus        57 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~  134 (204)
                      +|.+. .++. ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.
T Consensus       110 ~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  188 (306)
T 2z66_A          110 HSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  188 (306)
T ss_dssp             TSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence            55554 2222 223356666666666666654555556666777777777777664 45666777777777777777776


Q ss_pred             CCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496          135 SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY  199 (204)
Q Consensus       135 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  199 (204)
                      ..++     ..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|..+..++
T Consensus       189 ~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          189 QLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             EECT-----TTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             CcCH-----HHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCcccCHHHHHhhh
Confidence            5532     4566777788888888887765555666666 788888888888877777776653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=6.9e-25  Score=164.62  Aligned_cols=196  Identities=21%  Similarity=0.296  Sum_probs=140.3

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++   ++|++|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEEC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEEC
Confidence            3678999999988666667889999999999999999888888889999999999999886 6776553   67888888


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccc--cccccccCCCCCcEEEccCccCCCCcccc----------------hh
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSG--LIPDTIGNLRNLEWLGLAYNNLTSSTSKL----------------SF  142 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----------------~~  142 (204)
                      .+|.+....+..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|.+..++...                ..
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccC
Confidence            8887774444556777778888887777643  44556666777777777776665554211                01


Q ss_pred             hhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +..+..+++|++|++++|.+++..+..+..++ +|++|++++|.++ .+|..+..++.|+
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~  266 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQ  266 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCc-cCChhhccCCCcC
Confidence            13455666777777777777655555666666 6777777777776 5666666665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=6.2e-25  Score=172.47  Aligned_cols=196  Identities=23%  Similarity=0.264  Sum_probs=145.8

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEEC
Confidence            3678899999888777778888999999999999888887888888889999999988886 677666557888999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..++.     ..+..+++|+.|++++|
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-----HHHTTCTTCCEEEEESC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-----hHhcccCCCcEEeCCCC
Confidence            8888876667778888888888888888877777778888888888888888777653     34555666666666666


Q ss_pred             cCCCCCCccccccc-----------------------cCccEEEeeccccccccchhhhhhhhhc
Q 047496          161 PLDGFLPSSIGNLS-----------------------MSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       161 ~~~~~~~~~~~~~~-----------------------~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .+.+..+..+..++                       .+|+.|++++|.+++..+..|..++.|+
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence            55544333333332                       1566666666777654445677666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=1.1e-25  Score=161.63  Aligned_cols=192  Identities=19%  Similarity=0.215  Sum_probs=162.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCcc-ccccCCccccCCCccceeeecC-CcceeecCCccCCCCCCccEE
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-LVGVVSAPIFNMSTLKIIILIN-NSLFGSLPSRIGLSLPTVEHL   78 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L   78 (204)
                      ++++|++++|++.+..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+. .+++..+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            47899999999996666689999999999999997 8888777899999999999998 8887 6666555589999999


Q ss_pred             EcCCCcCccCCCccccCCCCCC---EEeccCC-cccccccccccCCCCCc-EEEccCccCCCCcccchhhhccccCCCcc
Q 047496           79 NLELNRFSGTIPSSITNASKLT---LLKLGGN-TFSGLIPDTIGNLRNLE-WLGLAYNNLTSSTSKLSFLSSLANCKKLR  153 (204)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~L~  153 (204)
                      ++.+|.+. .+|. +..+++|+   ++++++| .++...+..+..+++|+ .+++++|.+..++.     ..+.. ++|+
T Consensus       111 ~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-----~~~~~-~~L~  182 (239)
T 2xwt_C          111 GIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-----YAFNG-TKLD  182 (239)
T ss_dssp             EEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-----TTTTT-CEEE
T ss_pred             eCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-----hhcCC-CCCC
Confidence            99999998 5665 88888888   9999999 88876667799999999 99999999987764     34444 7899


Q ss_pred             EEEeeCCc-CCCCCCcccccc-ccCccEEEeeccccccccchhhhhhhhhc
Q 047496          154 SLNLIGNP-LDGFLPSSIGNL-SMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       154 ~l~l~~n~-~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +|++++|+ +++..+..|..+ + +|+.|++++|.+++..+..|..+..|+
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~-~L~~L~l~~N~l~~l~~~~~~~L~~L~  232 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLEHLKELI  232 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSB-CCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred             EEEcCCCCCcccCCHHHhhcccc-CCcEEECCCCccccCChhHhccCceee
Confidence            99999995 886666777777 7 999999999999976666677766553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=3.5e-25  Score=172.81  Aligned_cols=122  Identities=21%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             ccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccE
Q 047496           75 VEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRS  154 (204)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~  154 (204)
                      |++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+...+.     ..+..+++|++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~  351 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS-----RMFENLDKLEV  351 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-----GGGTTCTTCCE
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh-----hHhcCcccCCE
Confidence            3333333333333334445555666666666666665555556666666666666666554422     34555666666


Q ss_pred             EEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          155 LNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       155 l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |++++|.+++..+..+..++ +|++|++++|.+++..+..|..++.|+
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             EECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhccCCccc
Confidence            66666666655555565555 666666666666655555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=7.8e-25  Score=176.46  Aligned_cols=177  Identities=20%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496           19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK   98 (204)
Q Consensus        19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   98 (204)
                      .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            33444444444444444443334444444444444444444433333332224444455555444444333444444555


Q ss_pred             CCEEeccCCccccc---ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccccccc
Q 047496           99 LTLLKLGGNTFSGL---IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM  175 (204)
Q Consensus        99 L~~l~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  175 (204)
                      |++|++++|.+.+.   .+..+..+++|+.|++++|.+...++     ..+..+++|++|++++|.+++..+..+..++ 
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-  524 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-----HAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-  524 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh-----hhhccccCCCEEECCCCccCcCChhHhCccc-
Confidence            55555555544431   11234445555555555555444321     3455555666666666666555555555555 


Q ss_pred             CccEEEeeccccccccchhhhhhhhhc
Q 047496          176 SLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +| +|++++|.+++..|+.|..++.|+
T Consensus       525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          525 GI-YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             SC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             cc-EEECcCCcccccCHhhcccCCCCC
Confidence            55 666666666655555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=4e-24  Score=154.68  Aligned_cols=179  Identities=22%  Similarity=0.273  Sum_probs=154.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      .++++++++.+. .+|..+.  +.++.|++++|.+.+..+..+..+++|++|++++|.+. .+++..+..+++|++|+++
T Consensus        16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECT
T ss_pred             CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECC
Confidence            357888888887 6666555  68999999999999888888999999999999999997 5555555589999999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++.     ..+..+++|++|++++|.
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----GAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-----HHcCcCcCCCEEECCCCc
Confidence            999985556678899999999999999997766778999999999999999988864     468889999999999999


Q ss_pred             CCCCCCccccccccCccEEEeeccccccc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      +++..+..+..++ +|++|++++|.++..
T Consensus       167 l~~~~~~~~~~l~-~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          167 LQSVPHGAFDRLG-KLQTITLFGNQFDCS  194 (251)
T ss_dssp             CSCCCTTTTTTCT-TCCEEECCSCCBCTT
T ss_pred             CCccCHHHHhCCC-CCCEEEeeCCceeCC
Confidence            9977777788887 999999999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.1e-25  Score=161.16  Aligned_cols=181  Identities=25%  Similarity=0.353  Sum_probs=152.5

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|+.|++.++.+. .+ +.+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus        42 ~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           42 SIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             ceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEEC
Confidence            4788999999876 33 4588899999999999998864  36788999999999999987 666665558999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      .+|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...+.     ..+..+++|++|++++|
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-----GVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-----HHhcCCccCCEEECCCC
Confidence            9999985555667889999999999999987767778899999999999999988764     45788899999999999


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIP  192 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  192 (204)
                      .+++..+..+..++ +|++|++++|.+.+..|
T Consensus       192 ~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          192 QLKSVPDGVFDRLT-SLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCSCCCTTTTTTCT-TCCEEECCSSCBCCCTT
T ss_pred             cCCccCHHHHhCCc-CCCEEEccCCCccccCc
Confidence            99977777778887 99999999998876655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=4.1e-24  Score=156.33  Aligned_cols=184  Identities=26%  Similarity=0.272  Sum_probs=147.1

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+  .+.+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus        64 ~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           64 NVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEEC
Confidence            47888999988874  246788889999999999888877777888889999999999887 566655557888999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+....+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+...+.     ..+..+++|+++++++|
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-----GVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSS
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-----HHHhCCcCCCEEEccCC
Confidence            9988874445556788889999999998887766677888899999999998887754     45777888999999998


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL  200 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  200 (204)
                      .+.+..+        +++.+++..|.+++.+|.+++.++.
T Consensus       216 ~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          216 PWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CccccCc--------HHHHHHHHHHhCCCcccCcccccCC
Confidence            8775433        6788888888888888888776653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=2e-24  Score=159.36  Aligned_cols=174  Identities=24%  Similarity=0.286  Sum_probs=82.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      +++++++++++. .+|..+.  +.++.|++++|.+++..+..|..+++|+.|++++|.++ .++..  ..+++|++|+++
T Consensus        12 l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls   85 (290)
T 1p9a_G           12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLS   85 (290)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECC
T ss_pred             ccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECC
Confidence            344555555544 3333332  34555555555555444444555555555555555544 22222  144555555555


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+. .++..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...+.     ..+..+++|++|++++|.
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSC
T ss_pred             CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCc
Confidence            55554 444444445555555555555544433445555555555555555544432     233444455555555555


Q ss_pred             CCCCCCccccccccCccEEEeeccccc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      ++...+..+..++ +|++|++++|.++
T Consensus       160 l~~l~~~~~~~l~-~L~~L~L~~N~l~  185 (290)
T 1p9a_G          160 LTELPAGLLNGLE-NLDTLLLQENSLY  185 (290)
T ss_dssp             CSCCCTTTTTTCT-TCCEEECCSSCCC
T ss_pred             CCccCHHHhcCcC-CCCEEECCCCcCC
Confidence            5432222333344 4555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=171.06  Aligned_cols=195  Identities=19%  Similarity=0.158  Sum_probs=157.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus        57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l  135 (477)
T 2id5_A           57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEV  135 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEE
T ss_pred             CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEEC
Confidence            47899999999998888899999999999999999998877778899999999999999984444444 48999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC----------
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK----------  150 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~----------  150 (204)
                      .+|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+...+.     ..+..++          
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT-----TCSCSCTTCCEEEEECC
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh-----hhcccCcccceeeCCCC
Confidence            9999886667788899999999999998887666678888888888888887765532     2233333          


Q ss_pred             --------------CccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          151 --------------KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       151 --------------~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                                    +|++|++++|.+++..+..+..++ +|+.|++++|.+++..+..|..++.|+
T Consensus       211 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~  275 (477)
T 2id5_A          211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQ  275 (477)
T ss_dssp             TTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred             ccccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCC
Confidence                          566666666666633334566777 999999999999988888888888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=1.4e-24  Score=163.06  Aligned_cols=106  Identities=17%  Similarity=0.268  Sum_probs=74.6

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|..++   ++|++|++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEEC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEEC
Confidence            3678888888887666667888888888888888888777777888888888888888776 5665543   56666666


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCccc
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFS  110 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  110 (204)
                      .+|.+....+..+..+++|++|++++|.++
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            666665333334555666666666665553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=2.7e-24  Score=164.81  Aligned_cols=109  Identities=19%  Similarity=0.247  Sum_probs=71.9

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..++..+++|++|+++
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECC
Confidence            566777777666555556667777777777777776666666666777777777777665 5666554466777777777


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSG  111 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  111 (204)
                      +|.+....+..+..+++|++|++++|.+++
T Consensus       150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             SSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            776664445556666667777666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=4.9e-24  Score=157.27  Aligned_cols=177  Identities=24%  Similarity=0.219  Sum_probs=157.3

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+++..+.  ..+++|++|++++|.+. .+|..+. .+++|++|++
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l  107 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDV  107 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTT-TCTTCCEEEC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhc-cCCCCCEEEC
Confidence            478999999999977788899999999999999999876443  67899999999999997 7787665 8999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|++..++.     ..+..+++|++|++++|
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-----TTTTTCTTCCEEECCSS
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-----HHhcCcCCCCEEECCCC
Confidence            9999985555779999999999999999997777778999999999999999998874     45788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeeccccc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      .++ .+|..+.... +|+++++++|++.
T Consensus       183 ~l~-~ip~~~~~~~-~L~~l~L~~Np~~  208 (290)
T 1p9a_G          183 SLY-TIPKGFFGSH-LLPFAFLHGNPWL  208 (290)
T ss_dssp             CCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             cCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence            999 7888888887 9999999999886

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=1.6e-25  Score=181.33  Aligned_cols=194  Identities=23%  Similarity=0.340  Sum_probs=153.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccc--------------------------------------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNL--------------------------------------------   36 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------------------------   36 (204)
                      +++.|+|+++++.+.+|+.++.+++|+.|++++|.+                                            
T Consensus        82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~  161 (636)
T 4eco_A           82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL  161 (636)
T ss_dssp             CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence            357899999999889999999999999999988843                                            


Q ss_pred             ----------------------------------cccCCccccCCCccceeeecCCcceee-----------------cC
Q 047496           37 ----------------------------------VGVVSAPIFNMSTLKIIILINNSLFGS-----------------LP   65 (204)
Q Consensus        37 ----------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~   65 (204)
                                                        ++ .|..+..+++|++|++++|.+++.                 +|
T Consensus       162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                                              23 456677888999999999988754                 77


Q ss_pred             CccC-CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCc-ccc-cccccccCC------CCCcEEEccCccCCCC
Q 047496           66 SRIG-LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT-FSG-LIPDTIGNL------RNLEWLGLAYNNLTSS  136 (204)
Q Consensus        66 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~  136 (204)
                      +.+. ..+++|++|++.+|.+...+|..+..+++|++|++++|. +++ ..|..++.+      ++|+.|++++|.+..+
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i  320 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF  320 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence            7653 258889999999988887888888889999999999987 877 677777665      8889999999888866


Q ss_pred             cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh-hc
Q 047496          137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL-FQ  202 (204)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~-l~  202 (204)
                      |..    ..++.+++|++|++++|.+.+.+| .+..++ +|++|++++|.++ .+|..++.++. |+
T Consensus       321 p~~----~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~  380 (636)
T 4eco_A          321 PVE----TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVE  380 (636)
T ss_dssp             CCH----HHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred             Cch----hhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCc
Confidence            520    157778888888888888887777 777776 7888888888777 66777776665 43

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.1e-25  Score=170.42  Aligned_cols=132  Identities=25%  Similarity=0.303  Sum_probs=79.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus        54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECT
T ss_pred             CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECC
Confidence            566777777766544446667777777777777776666666666777777777777665 4555433356667777776


Q ss_pred             CCcCccCCCc--cccCCCCCCEEeccCC-cccccccccccCCCCCcEEEccCccCCC
Q 047496           82 LNRFSGTIPS--SITNASKLTLLKLGGN-TFSGLIPDTIGNLRNLEWLGLAYNNLTS  135 (204)
Q Consensus        82 ~~~~~~~~~~--~~~~~~~L~~l~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~  135 (204)
                      +|.+. .++.  .+..+++|++|++++| .+....+..+..+++|+.|++++|.+..
T Consensus       133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            66665 3333  4556666666666665 2443334445555555555555554433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.9e-24  Score=172.16  Aligned_cols=110  Identities=19%  Similarity=0.242  Sum_probs=78.5

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+..+..|+.+++|+.|++++|.+++..+..|..+++|++|++++|.+. .+|+.++..+++|++|++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEe
Confidence            3677777777777666667777777777777777777776666777777777777777776 666665556777777777


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccc
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSG  111 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  111 (204)
                      ++|.+....+..+..+++|++|++++|.+++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            7777765555566777777777777766553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=3.6e-25  Score=165.02  Aligned_cols=190  Identities=19%  Similarity=0.193  Sum_probs=148.4

Q ss_pred             CcceEEccCCccccccChhc--cCCCCCcEEEccCccccccCCccccCC-----CccceeeecCCcceeecCCccCCCCC
Q 047496            1 MLKGIYLGYNKLHGEIPHEI--ANLRNLEALALGMNNLVGVVSAPIFNM-----STLKIIILINNSLFGSLPSRIGLSLP   73 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~   73 (204)
                      +|++|++++|.+.+.+|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|.+.+..+..+. .++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~  173 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFP  173 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCC
Confidence            47889999999988888876  8899999999999999877 6666665     8999999999998743334444 899


Q ss_pred             CccEEEcCCCcCccC--CCccc--cCCCCCCEEeccCCccccc---ccccccCCCCCcEEEccCccCCCCcccchhhhcc
Q 047496           74 TVEHLNLELNRFSGT--IPSSI--TNASKLTLLKLGGNTFSGL---IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL  146 (204)
Q Consensus        74 ~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~l~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  146 (204)
                      +|++|++++|.+...  .+..+  ..+++|++|++++|.+++.   ....+..+++|+.|++++|.+...++.    ..+
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~  249 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA----PSC  249 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----SCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch----hhh
Confidence            999999999986532  22333  7788999999999988732   223456789999999999998875421    345


Q ss_pred             ccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          147 ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       147 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ..+++|++|++++|.++ .+|..+.  + +|++|++++|++++. |. +..++.|+
T Consensus       250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~-~L~~L~Ls~N~l~~~-p~-~~~l~~L~  299 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLK-QVPKGLP--A-KLSVLDLSYNRLDRN-PS-PDELPQVG  299 (312)
T ss_dssp             CCCTTCCEEECTTSCCS-SCCSSCC--S-EEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred             hhcCCCCEEECCCCccC-hhhhhcc--C-CceEEECCCCCCCCC-hh-HhhCCCCC
Confidence            56789999999999998 7787776  4 899999999999866 66 77777765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=5.2e-24  Score=171.65  Aligned_cols=199  Identities=23%  Similarity=0.270  Sum_probs=110.0

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus       280 L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  358 (606)
T 3t6q_A          280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS  358 (606)
T ss_dssp             CSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred             CCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence            566666666665 5566666666666666666666655555555566666666666655544554433355666666666


Q ss_pred             CCcCccCC--CccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc-------------------
Q 047496           82 LNRFSGTI--PSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL-------------------  140 (204)
Q Consensus        82 ~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------------  140 (204)
                      +|.+....  +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.......                   
T Consensus       359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  438 (606)
T 3t6q_A          359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD  438 (606)
T ss_dssp             SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred             CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence            65554222  334455555555555555554444444444455555555544443321100                   


Q ss_pred             -hhhhccccCCCccEEEeeCCcCCCC---CCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          141 -SFLSSLANCKKLRSLNLIGNPLDGF---LPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       141 -~~~~~~~~~~~L~~l~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                       ..+..+..+++|++|++++|.+++.   .+..+..++ +|++|++++|.+++..|.+|..++.|+
T Consensus       439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhccccCCC
Confidence             0113455566666666666666541   223455555 677777777777766667776666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=6.4e-24  Score=155.58  Aligned_cols=184  Identities=20%  Similarity=0.231  Sum_probs=155.3

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEEC
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEEC
Confidence            4789999999998777778999999999999999999888888999999999999999987 555543448999999999


Q ss_pred             CCCcCcc-CCCccccCCCCCCEEeccCCcccccccccccCCCCCc----EEEccCccCCCCcccchhhhccccCCCccEE
Q 047496           81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE----WLGLAYNNLTSSTSKLSFLSSLANCKKLRSL  155 (204)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l  155 (204)
                      ++|.+.. .++..+..+++|++|++++|.+++..+..+..+.+++    .+++++|.+..++.      ......+|++|
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~------~~~~~~~L~~L  205 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------GAFKEIRLKEL  205 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT------TSSCSCCEEEE
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc------cccCCCcccEE
Confidence            9999974 3588899999999999999999877666776666666    89999999987763      23334589999


Q ss_pred             EeeCCcCCCCCCccccccccCccEEEeeccccccccc
Q 047496          156 NLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIP  192 (204)
Q Consensus       156 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  192 (204)
                      ++++|.+++..+..+..++ +|++|++++|+++...|
T Consensus       206 ~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCC-SCCEEECCSSCBCCCTT
T ss_pred             ECCCCceeecCHhHhcccc-cccEEEccCCcccccCC
Confidence            9999999966555667777 99999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=6e-25  Score=166.41  Aligned_cols=173  Identities=22%  Similarity=0.315  Sum_probs=112.5

Q ss_pred             EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496            5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR   84 (204)
Q Consensus         5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   84 (204)
                      .+.+++.+. .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|++++|.
T Consensus        36 c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           36 CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC
T ss_pred             eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCc
Confidence            445555555 4555443  47777777777777666666777777777777777776 3433333367777777777777


Q ss_pred             CccCCCcc-ccCCCCCCEEeccCCccccccc-ccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           85 FSGTIPSS-ITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        85 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      ++ .++.. +..+++|++|++++|.+....+ ..+..+++|+.|++++|. +...+.     ..+..+++|++|++++|.
T Consensus       112 l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----KDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             CS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETT
T ss_pred             CC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-----HHccCCCCCCEEECCCCC
Confidence            76 44433 6677777777777777774333 357777777777777773 444332     356666777777777777


Q ss_pred             CCCCCCccccccccCccEEEeeccccc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +.+..+..+..++ +|++|++++|.++
T Consensus       186 l~~~~~~~l~~l~-~L~~L~l~~n~l~  211 (353)
T 2z80_A          186 LQSYEPKSLKSIQ-NVSHLILHMKQHI  211 (353)
T ss_dssp             CCEECTTTTTTCS-EEEEEEEECSCST
T ss_pred             cCccCHHHHhccc-cCCeecCCCCccc
Confidence            7666666666655 5666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=2.8e-24  Score=173.25  Aligned_cols=191  Identities=21%  Similarity=0.176  Sum_probs=134.8

Q ss_pred             CcceEEccCCccccc--cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496            1 MLKGIYLGYNKLHGE--IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL   78 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   78 (204)
                      +|++|++++|.+.+.  .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+...+..+++|++|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            366777777776644  366677777777777777777653 35566777778888877777644442334467778888


Q ss_pred             EcCCCcCccCCCccccCCCCCCEEeccCCcccc-cccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496           79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFSG-LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL  157 (204)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  157 (204)
                      ++++|.+....+..+..+++|++|++++|.+.+ ..|..++.+++|+.|++++|.+...++     ..+..+++|++|++
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-----GVFDTLHRLQLLNM  504 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEEC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-----hhhcccccCCEEEC
Confidence            888777776666677777778888888777775 356677777788888888877766532     45677777888888


Q ss_pred             eCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496          158 IGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY  199 (204)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  199 (204)
                      ++|.+++..|..+..++ +|++|++++|.++ .+|..+..++
T Consensus       505 s~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             CSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSC
T ss_pred             CCCcCCCcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhc
Confidence            88877766677777776 7788888888777 4555566654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=2.1e-23  Score=159.87  Aligned_cols=134  Identities=22%  Similarity=0.260  Sum_probs=116.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEEC
Confidence            4688999999988544455789999999999999999888888999999999999999997 555555458999999999


Q ss_pred             CCCcCccCCCcc-ccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496           81 ELNRFSGTIPSS-ITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                      .+|.+. .++.. +..+++|++|++++|.+.+..+..++.+++|+.|++++|.+...
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            999998 55544 68899999999999999987778899999999999999988765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=4.5e-23  Score=154.72  Aligned_cols=190  Identities=18%  Similarity=0.251  Sum_probs=126.3

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccc--cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG--VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      |++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+.   ++|++|+
T Consensus       123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~  198 (330)
T 1xku_A          123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELH  198 (330)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEE
T ss_pred             ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEE
Confidence            4556666665554444456667777777777776643  44555666777777777777765 4555432   6777777


Q ss_pred             cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496           80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus        80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      +++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+|      ..+..+++|++|++++
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp------~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP------GGLADHKYIQVVYLHN  272 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC------TTTTTCSSCCEEECCS
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC------hhhccCCCcCEEECCC
Confidence            7777776555666777778888888888777666666777778888888888777665      4566777788888888


Q ss_pred             CcCCCCCCcccccc-----ccCccEEEeecccccc--ccchhhhhhhhh
Q 047496          160 NPLDGFLPSSIGNL-----SMSLETLLITNCSISG--NIPQAISTKYLF  201 (204)
Q Consensus       160 n~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~--~~~~~~~~l~~l  201 (204)
                      |.+++..+..|...     ...++.+++++|.+..  ..|..|..++.+
T Consensus       273 N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             CcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence            88775555555432     1267778888887653  445556555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.91  E-value=1.2e-24  Score=180.36  Aligned_cols=191  Identities=21%  Similarity=0.272  Sum_probs=124.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEc-cCcccccc-----------------------------------------
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALAL-GMNNLVGV-----------------------------------------   39 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~-----------------------------------------   39 (204)
                      ++.|+|+++++.+.+|+.++.+++|+.|++ ++|.+.+.                                         
T Consensus       325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~  404 (876)
T 4ecn_A          325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL  404 (876)
T ss_dssp             EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence            566778888887777877888888888888 55543222                                         


Q ss_pred             -----------------------------------CCccccCCCccceeeecCCccee-----------------ecCCc
Q 047496           40 -----------------------------------VSAPIFNMSTLKIIILINNSLFG-----------------SLPSR   67 (204)
Q Consensus        40 -----------------------------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~   67 (204)
                                                         .|..+..+++|+.|++++|.+++                 .+|+.
T Consensus       405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~  484 (876)
T 4ecn_A          405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE  484 (876)
T ss_dssp             HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence                                               44556677778888888777775                 26665


Q ss_pred             c-CCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCc-ccc-cccccccCC-------CCCcEEEccCccCCCCc
Q 047496           68 I-GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNT-FSG-LIPDTIGNL-------RNLEWLGLAYNNLTSST  137 (204)
Q Consensus        68 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~  137 (204)
                      + +..+++|+.|++.+|.+...+|..+..+++|++|++++|. +++ .+|..++.+       ++|+.|++++|.+..+|
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip  564 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP  564 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence            5 2357777888887777666777777777777777777776 665 455544433       37777777777766554


Q ss_pred             ccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496          138 SKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL  200 (204)
Q Consensus       138 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  200 (204)
                      .    ...+..+++|++|++++|.++ .+| .+..++ +|+.|++++|.++ .+|..+..++.
T Consensus       565 ~----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~  619 (876)
T 4ecn_A          565 A----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTD  619 (876)
T ss_dssp             C----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECT
T ss_pred             C----hhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccc
Confidence            1    014555666666666666666 555 555555 5666666666665 55555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=3e-23  Score=155.84  Aligned_cols=190  Identities=18%  Similarity=0.207  Sum_probs=122.4

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccc--cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG--VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      |++|++++|.+....+..+..+++|++|++++|.++.  ..+..+..+ +|+.|++++|.+. .+|..+.   ++|++|+
T Consensus       125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~  199 (332)
T 2ft3_A          125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELH  199 (332)
T ss_dssp             CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCB
T ss_pred             CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEE
Confidence            3444444444443333334444555555555544432  233333333 4555555555443 3443332   5677777


Q ss_pred             cCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496           80 LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus        80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      +++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..+|      ..+..+++|++|++++
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp------~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP------AGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC------TTGGGCTTCCEEECCS
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC------hhhhcCccCCEEECCC
Confidence            7777777555567788888888888888888776667888888888888888887666      4577788888888888


Q ss_pred             CcCCCCCCcccccc-----ccCccEEEeeccccc--cccchhhhhhhhhc
Q 047496          160 NPLDGFLPSSIGNL-----SMSLETLLITNCSIS--GNIPQAISTKYLFQ  202 (204)
Q Consensus       160 n~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~--~~~~~~~~~l~~l~  202 (204)
                      |.+++..+..|...     ...++.+++++|.+.  +..|.+|..++.|+
T Consensus       274 N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence            88886656555543     236888888888876  56777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=6.1e-23  Score=167.45  Aligned_cols=193  Identities=21%  Similarity=0.203  Sum_probs=113.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCC-ccccCCCccceeeecCCcceeecCCccCC----------
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS-APIFNMSTLKIIILINNSLFGSLPSRIGL----------   70 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------   70 (204)
                      |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. .+++..+.          
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEEC
T ss_pred             CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchh
Confidence            5677777777776667777777777777777777765433 55666777777777777665 22222222          


Q ss_pred             ----------------CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccccc--------ccccCCCCCcEE
Q 047496           71 ----------------SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP--------DTIGNLRNLEWL  126 (204)
Q Consensus        71 ----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------~~l~~l~~L~~L  126 (204)
                                      .+++|+.|++++|.+....+..+..+++|++|++++|.+++..+        ..+..+++|+.|
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence                            44455555555555543333344555555555555555543211        124455556666


Q ss_pred             EccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhh-hhhhh
Q 047496          127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS-TKYLF  201 (204)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~l  201 (204)
                      ++++|.+..++.     ..+.++++|++|++++|.+++..+..|..++ +|+.|++++|.+++..|..|. .++.|
T Consensus       542 ~L~~N~l~~i~~-----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          542 NLESNGFDEIPV-----EVFKDLFELKIIDLGLNNLNTLPASVFNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             ECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             ECCCCCCCCCCH-----HHcccccCcceeECCCCCCCcCCHhHhCCCC-CCCEEECCCCcCCccChhHhccccccc
Confidence            666665555442     3456666777777777777644444455555 677777777777766666555 44443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.7e-23  Score=166.52  Aligned_cols=136  Identities=21%  Similarity=0.213  Sum_probs=117.8

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +++.++++++.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEe
Confidence            3678999999988555556789999999999999999888888999999999999999997 566655558999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCc
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST  137 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  137 (204)
                      ++|.+....+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+...+
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            999998433444689999999999999999888888999999999999999887653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=1.8e-24  Score=175.21  Aligned_cols=191  Identities=17%  Similarity=0.223  Sum_probs=149.8

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCcc-ccc-cCCccccCC------CccceeeecCCcceeecCC--ccCC
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-LVG-VVSAPIFNM------STLKIIILINNSLFGSLPS--RIGL   70 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~   70 (204)
                      +|++|++++|.+.+.+|..++.+++|++|++++|. +++ ..|..+..+      ++|++|++++|.++ .+|.  .+. 
T Consensus       250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-  327 (636)
T 4eco_A          250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-  327 (636)
T ss_dssp             TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-
T ss_pred             CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-
Confidence            47899999999988999999999999999999998 887 667666655      89999999999987 7887  666 


Q ss_pred             CCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCC-CcEEEccCccCCCCcccchhhhccccC
Q 047496           71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN-LEWLGLAYNNLTSSTSKLSFLSSLANC  149 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~  149 (204)
                      .+++|++|++.+|.+.+.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.+..+|.      .+...
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~------~~~~~  399 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPN------IFDAK  399 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCS------CCCTT
T ss_pred             cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccch------hhhhc
Confidence            78899999999998886777 7888888999999998888 66777888888 9999999998886663      33333


Q ss_pred             --CCccEEEeeCCcCCCCCCcccc-------ccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          150 --KKLRSLNLIGNPLDGFLPSSIG-------NLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       150 --~~L~~l~l~~n~~~~~~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                        ++|++|++++|.+.+..|..+.       .+. +|++|++++|.+++..+..+..++.|+
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~~~l~~L~  460 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLS  460 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCEEECcCCccCcCCHHHHccCCCCC
Confidence              3788888888888777776666       555 777777777777744334444455443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=4.8e-24  Score=159.24  Aligned_cols=196  Identities=19%  Similarity=0.166  Sum_probs=116.3

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCc-------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR-------------   67 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------   67 (204)
                      +|++|++++|.+.+..+..+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++..             
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNI  111 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCcc
Confidence            37889999998887666788889999999999998876543  6777888888888877652 2110             


Q ss_pred             ---cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccc-cCCCCCcEEEccCccCCCCcccc---
Q 047496           68 ---IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI-GNLRNLEWLGLAYNNLTSSTSKL---  140 (204)
Q Consensus        68 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---  140 (204)
                         ....+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+...+...   
T Consensus       112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~  191 (317)
T 3o53_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA  191 (317)
T ss_dssp             SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT
T ss_pred             CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccc
Confidence               01134556666666666654334455666667777777766665444444 24555555555555554432100   


Q ss_pred             -------------hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc-cccchhhhhhhhh
Q 047496          141 -------------SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS-GNIPQAISTKYLF  201 (204)
Q Consensus       141 -------------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~l  201 (204)
                                   .++..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.++ +..|..+..++.+
T Consensus       192 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~-~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             cCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCC-CCCEEEccCCCccCcCHHHHHhccccc
Confidence                         00022444555555555555555 3444454444 5555566555555 4455555544443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4.9e-24  Score=167.68  Aligned_cols=188  Identities=21%  Similarity=0.173  Sum_probs=129.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCc-------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSR-------------   67 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------   67 (204)
                      +|++|++++|.+.+..|..|..+++|+.|++++|.+++..+  +..+++|++|++++|.+. .++..             
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcC
Confidence            37899999999997777889999999999999999887654  778888888888888776 22211             


Q ss_pred             ---cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCccccccccccc-CCCCCcEEEccCccCCCCcccchhh
Q 047496           68 ---IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG-NLRNLEWLGLAYNNLTSSTSKLSFL  143 (204)
Q Consensus        68 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~  143 (204)
                         ....+++|+.|++++|.+....+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+...+.     
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-----  186 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-----  186 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-----
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-----
Confidence               011356677777777777655566677777888888888877766666654 57777777777777665532     


Q ss_pred             hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                        ...+++|++|++++|.+++ +|..+..++ +|+.|++++|.+++ +|..+..++.|
T Consensus       187 --~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l~~L  239 (487)
T 3oja_A          187 --QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLVL-IEKALRFSQNL  239 (487)
T ss_dssp             --CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred             --cccCCCCCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCcc-cchhhccCCCC
Confidence              2345666666666666663 333455555 66666666666663 45555544443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=1.1e-23  Score=169.75  Aligned_cols=176  Identities=19%  Similarity=0.161  Sum_probs=145.8

Q ss_pred             ccCCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCC-ccccCC
Q 047496           20 IANLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIP-SSITNA   96 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~   96 (204)
                      +..+++|++|++++|.+++.  .+..+..+++|++|++++|.+. .+|..+. .+++|++|++.+|.+....+ ..+..+
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l  423 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSL  423 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhcc
Confidence            45667777777777777655  2566777888888888888876 5665555 78999999999998875555 578889


Q ss_pred             CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccC
Q 047496           97 SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS  176 (204)
Q Consensus        97 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~  176 (204)
                      ++|++|++++|.+.+..+..+..+++|+.|++++|.+....    .+..+..+++|++|++++|.+++..+..+..++ +
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~  498 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-R  498 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-T
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----hHHhhccCCCCCEEECCCCcCCccChhhhcccc-c
Confidence            99999999999998888888999999999999999887621    125688899999999999999988888898988 9


Q ss_pred             ccEEEeeccccccccchhhhhhhhhc
Q 047496          177 LETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       177 L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |++|++++|.+++..|..|+.++.|+
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~  524 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLS  524 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCC
Confidence            99999999999999999999888775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=7.1e-23  Score=167.06  Aligned_cols=201  Identities=20%  Similarity=0.195  Sum_probs=143.3

Q ss_pred             CcceEEccCCccccc-cC-hhccC--CCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCcc
Q 047496            1 MLKGIYLGYNKLHGE-IP-HEIAN--LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVE   76 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~-~~-~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~   76 (204)
                      +|++|++++|.+... ++ ..+..  .+.|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|+
T Consensus       354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~  433 (680)
T 1ziw_A          354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF  433 (680)
T ss_dssp             TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred             CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence            478999999975422 22 23332  368999999999999988888999999999999999998778866666899999


Q ss_pred             EEEcCCCcCccCC--------------------------CccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccC
Q 047496           77 HLNLELNRFSGTI--------------------------PSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY  130 (204)
Q Consensus        77 ~L~l~~~~~~~~~--------------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~  130 (204)
                      +|++++|.+....                          |..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus       434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~  513 (680)
T 1ziw_A          434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH  513 (680)
T ss_dssp             EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence            9999999865332                          33445556666666666666655555566666677777777


Q ss_pred             ccCCCCcccc---hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          131 NNLTSSTSKL---SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       131 ~~~~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |.+..++...   .....+.++++|++|++++|.++...+..|..++ +|+.|++++|.+++..+..|..++.|+
T Consensus       514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~  587 (680)
T 1ziw_A          514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLK  587 (680)
T ss_dssp             SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc-CcceeECCCCCCCcCCHhHhCCCCCCC
Confidence            6665432110   0002356777888888888888743334567777 888888888888877677777776665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.8e-23  Score=146.14  Aligned_cols=181  Identities=21%  Similarity=0.186  Sum_probs=150.7

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      +.++.+++.+. .+|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            35666666665 455443  468999999999999887777889999999999999997 67777666899999999999


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL  162 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  162 (204)
                      |.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++.     ..+..+++|+++++++|.+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-----GVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSCCB
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-----HHhccCCCccEEEecCCCe
Confidence            99984445557899999999999999997766778999999999999999988764     4578899999999999987


Q ss_pred             CCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496          163 DGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL  200 (204)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  200 (204)
                      .+..       + +++.|++..|.+++.+|..++.++.
T Consensus       161 ~~~~-------~-~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 DCTC-------P-GIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCCT-------T-TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ecCC-------C-CHHHHHHHHHhCCceeeccCccccC
Confidence            7543       3 7899999999999999998887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=1.7e-22  Score=146.12  Aligned_cols=159  Identities=25%  Similarity=0.276  Sum_probs=142.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEc
Confidence            3789999999999878888999999999999999999988888999999999999999997 677666668999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...+.     ..+..+++|+++++++|
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-----GAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-----HHHhCCCCCCEEEeeCC
Confidence            9999985445557889999999999999997767789999999999999999998864     46888999999999999


Q ss_pred             cCCCC
Q 047496          161 PLDGF  165 (204)
Q Consensus       161 ~~~~~  165 (204)
                      .+...
T Consensus       190 ~~~c~  194 (251)
T 3m19_A          190 QFDCS  194 (251)
T ss_dssp             CBCTT
T ss_pred             ceeCC
Confidence            99765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.4e-23  Score=165.68  Aligned_cols=186  Identities=22%  Similarity=0.292  Sum_probs=147.2

Q ss_pred             CcceEEccCCcccccc--ChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496            1 MLKGIYLGYNKLHGEI--PHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL   78 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   78 (204)
                      +|++|++++|.+....  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+...+..+++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            3677788887776432  56677888888888888888766554 77888888888888888754454445578889999


Q ss_pred             EcCCCcCccCCCccccCCCCCCEEeccCCccc-ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496           79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL  157 (204)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  157 (204)
                      ++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+...++     ..+..+++|++|++
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l  501 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNM  501 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEEC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-----hhhhcccCCCEEeC
Confidence            99988887667777888889999999998886 4677888888999999999998876632     56778889999999


Q ss_pred             eCCcCCCCCCccccccccCccEEEeeccccccccch
Q 047496          158 IGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQ  193 (204)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  193 (204)
                      ++|.+++..+..+..++ +|+.|++++|++++..|.
T Consensus       502 ~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          502 ASNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTTT
T ss_pred             CCCcCCCCCHHHhhccc-CCcEEEecCCcccCCCcc
Confidence            99998877777777777 899999999988877663

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=1.5e-22  Score=150.62  Aligned_cols=179  Identities=22%  Similarity=0.339  Sum_probs=115.9

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+. .++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++ .+. .+++|++|++
T Consensus        42 ~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L~l  114 (308)
T 1h6u_A           42 GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTLDL  114 (308)
T ss_dssp             TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEEC
T ss_pred             CcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCEEEC
Confidence            3677788877776 333 46777788888888887776544  667777778888777765 333 333 6777777777


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+. ..+ .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+...+       .+..+++|++|++++|
T Consensus       115 ~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          115 TSTQIT-DVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-------PLANLSKLTTLKADDN  183 (308)
T ss_dssp             TTSCCC-CCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             CCCCCC-Cch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-------hhcCCCCCCEEECCCC
Confidence            777776 333 36677777777777777764422  666777777777777766553       2556666777777777


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .+++..+  +..++ +|++|++++|.+++..+  +..++.|+
T Consensus       184 ~l~~~~~--l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~  220 (308)
T 1h6u_A          184 KISDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLF  220 (308)
T ss_dssp             CCCCCGG--GGGCT-TCCEEECTTSCCCBCGG--GTTCTTCC
T ss_pred             ccCcChh--hcCCC-CCCEEEccCCccCcccc--ccCCCCCC
Confidence            6663222  55555 66777777776664432  55555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.3e-23  Score=156.61  Aligned_cols=178  Identities=21%  Similarity=0.226  Sum_probs=147.1

Q ss_pred             CcceEEccCCccccccChhccCC-----CCCcEEEccCccccccCCccccCCCccceeeecCCcceee--cCCcc-CCCC
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANL-----RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGS--LPSRI-GLSL   72 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~-~~~~   72 (204)
                      +|++|++++|.+.+. |..++.+     ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  ++..+ +..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            478999999999866 7777776     9999999999999998888899999999999999997644  23333 2478


Q ss_pred             CCccEEEcCCCcCcc--CCC-ccccCCCCCCEEeccCCccccccc-ccccCCCCCcEEEccCccCCCCcccchhhhcccc
Q 047496           73 PTVEHLNLELNRFSG--TIP-SSITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLAN  148 (204)
Q Consensus        73 ~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  148 (204)
                      ++|++|++++|.+..  ..+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++.+|.      .+. 
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~------~~~-  273 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK------GLP-  273 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS------SCC-
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh------hcc-
Confidence            999999999999872  111 233567899999999999987664 456678999999999999997764      333 


Q ss_pred             CCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccc
Q 047496          149 CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       149 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                       ++|++|++++|.+++. |. +..++ +|++|++++|++++.
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~-~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELP-QVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSC-EEEEEECTTCTTTCC
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCC-CCCEEeccCCCCCCC
Confidence             7899999999999955 55 78887 999999999999853

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=9.8e-23  Score=161.54  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=89.9

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+. .+|..   .+++|++|++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L   97 (520)
T 2z7x_B           22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDL   97 (520)
T ss_dssp             TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEEC
T ss_pred             cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEec
Confidence            4788999999988666678999999999999999999888888999999999999999987 67766   5889999999


Q ss_pred             CCCcCcc-CCCccccCCCCCCEEeccCCccc
Q 047496           81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFS  110 (204)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~  110 (204)
                      ++|.+.. ..|..+..+++|++|++++|.+.
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccc
Confidence            9998874 35678888888888888877664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=7.9e-23  Score=170.38  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=27.2

Q ss_pred             ccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          145 SLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       145 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      .+..+++|++|++++|.+.+..+..|..++ +|++|++++|.+++..|..|..++.|
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             hhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCC
Confidence            344445555555555555444444444444 45555555555544444444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=4e-23  Score=165.28  Aligned_cols=190  Identities=22%  Similarity=0.243  Sum_probs=153.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccC--CccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVV--SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      |++|++.+|.+....+.  ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+. .++..+. .+++|++|+
T Consensus       327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~  402 (570)
T 2z63_A          327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL-GLEQLEHLD  402 (570)
T ss_dssp             CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEE-TCTTCCEEE
T ss_pred             cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccccc-ccCCCCEEE
Confidence            34444444444322222  56788888888888877553  556778889999999999887 4555554 789999999


Q ss_pred             cCCCcCccCCC-ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCC--CcccchhhhccccCCCccEEE
Q 047496           80 LELNRFSGTIP-SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS--STSKLSFLSSLANCKKLRSLN  156 (204)
Q Consensus        80 l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~L~~l~  156 (204)
                      +.+|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..  .|      ..+..+++|++|+
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p------~~~~~l~~L~~L~  476 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------DIFTELRNLTFLD  476 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC------SCCTTCTTCCEEE
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch------hhhhcccCCCEEE
Confidence            99999875444 467889999999999999988888889999999999999998863  33      5788899999999


Q ss_pred             eeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          157 LIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +++|.+++..|..+..++ +|++|++++|.+++..|..|..++.|+
T Consensus       477 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             CTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence            999999988888999888 999999999999988888898888775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=1.9e-22  Score=161.32  Aligned_cols=107  Identities=22%  Similarity=0.291  Sum_probs=89.8

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..   .+++|++|++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L  128 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDL  128 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEEC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEEC
Confidence            4788999999988666678889999999999999998888888888999999999999987 77776   5889999999


Q ss_pred             CCCcCcc-CCCccccCCCCCCEEeccCCcccc
Q 047496           81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSG  111 (204)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~  111 (204)
                      ++|.+.. ..|..+..+++|++|++++|.+..
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            9998874 235678888889999888887753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=2e-23  Score=173.07  Aligned_cols=181  Identities=18%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             CcceEEccCCcccc-----------------ccChhcc--CCCCCcEEEccCccccccCCccccCCCccceeeecCCc-c
Q 047496            1 MLKGIYLGYNKLHG-----------------EIPHEIA--NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-L   60 (204)
Q Consensus         1 ~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~   60 (204)
                      +|++|+|++|.+.+                 .+|+.++  .+++|+.|++++|.+.+..|..+..+++|+.|++++|. +
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            47788888888886                 3777776  88888888888888888888888888888888888887 7


Q ss_pred             ee-ecCCccC------CCCCCccEEEcCCCcCccCCCc--cccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCc
Q 047496           61 FG-SLPSRIG------LSLPTVEHLNLELNRFSGTIPS--SITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYN  131 (204)
Q Consensus        61 ~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~  131 (204)
                      ++ .+|..+.      ..+++|++|++++|.+. .+|.  .+..+++|++|++++|.+. .+| .++.+++|+.|++++|
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence            65 5665332      24558888888888887 7777  7778888888888888777 556 6777778888888888


Q ss_pred             cCCCCcccchhhhccccCCC-ccEEEeeCCcCCCCCCccccccc-cCccEEEeecccccccc
Q 047496          132 NLTSSTSKLSFLSSLANCKK-LRSLNLIGNPLDGFLPSSIGNLS-MSLETLLITNCSISGNI  191 (204)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~-L~~l~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~  191 (204)
                      .+..+|      ..+..+++ |++|++++|.++ .+|..+.... ++|+.|++++|.+++.+
T Consensus       606 ~l~~lp------~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          606 QIEEIP------EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             CCSCCC------TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             ccccch------HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence            777555      34666666 777777777766 5555554433 12555555555554433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=5.6e-22  Score=149.68  Aligned_cols=181  Identities=23%  Similarity=0.375  Sum_probs=98.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC------------
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG------------   69 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------   69 (204)
                      |++|++++|...... +.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++. +.            
T Consensus       134 L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          134 MYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYV  208 (347)
T ss_dssp             CCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCS
T ss_pred             eeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCCCccceeeccc
Confidence            566777776444222 335666666666666666554332  445556666666666554 2222 11            


Q ss_pred             ---------CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc
Q 047496           70 ---------LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL  140 (204)
Q Consensus        70 ---------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  140 (204)
                               ..+++|++|++++|.+. ..+. +..+++|++|++++|.++..  ..+..+++|+.|++++|.+...+   
T Consensus       209 n~l~~~~~~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~---  281 (347)
T 4fmz_A          209 NQITDITPVANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS---  281 (347)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---
T ss_pred             CCCCCCchhhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh---
Confidence                     13455555555555554 2222 45555555555555555532  33555556666666666555442   


Q ss_pred             hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          141 SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       141 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                          .+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|  +..++.|
T Consensus       282 ----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          282 ----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             ----GGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             ----hhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEccCCccccccC--hhhhhcc
Confidence                355566666666666666655555555555 66666666666665444  4444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=8.7e-23  Score=151.98  Aligned_cols=191  Identities=18%  Similarity=0.136  Sum_probs=143.9

Q ss_pred             CcceEEccCCccccccChhc--cCCCCCcEEEccCccccccCC----ccccCCCccceeeecCCcceeecCCccCCCCCC
Q 047496            1 MLKGIYLGYNKLHGEIPHEI--ANLRNLEALALGMNNLVGVVS----APIFNMSTLKIIILINNSLFGSLPSRIGLSLPT   74 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   74 (204)
                      +|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+. .++...+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence            37899999999988888877  889999999999999886544    33456889999999999997 455444448999


Q ss_pred             ccEEEcCCCcCccC--C--CccccCCCCCCEEeccCCcccccccc----cccCCCCCcEEEccCccCCCC-cccchhhhc
Q 047496           75 VEHLNLELNRFSGT--I--PSSITNASKLTLLKLGGNTFSGLIPD----TIGNLRNLEWLGLAYNNLTSS-TSKLSFLSS  145 (204)
Q Consensus        75 L~~L~l~~~~~~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~  145 (204)
                      |++|++++|.+...  .  +..+..+++|++|++++|.++.. +.    .++.+++|+.|++++|.+... |..+   ..
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~---~~  246 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSA---PR  246 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC---SS
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhH---Hh
Confidence            99999999986521  1  23346788999999999988732 22    356789999999999999877 4211   22


Q ss_pred             cccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          146 LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       146 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +..+++|++|++++|.++ .+|..+.  + +|++|++++|.+++. |. +..++.|+
T Consensus       247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~-~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE-QVPKGLP--A-KLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC-SCCSCCC--S-CCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             ccCcCcCCEEECCCCCCC-chhhhhc--C-CCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            222379999999999998 6777764  4 899999999999863 32 44444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=6.3e-22  Score=164.98  Aligned_cols=191  Identities=21%  Similarity=0.246  Sum_probs=146.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccc-cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG-VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      ++++|++++|.+.+..+..|..+++|+.|++++|...+ ..+..|..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~  103 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELR  103 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEE
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc-CCcccCEee
Confidence            46788899888887778888888999999998885543 3467788888899999998888754455554 888899999


Q ss_pred             cCCCcCccCCCcc--ccCCCCCCEEeccCCccccccc-ccccCCCCCcEEEccCccCCCCcccchhhhccccC--CCccE
Q 047496           80 LELNRFSGTIPSS--ITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANC--KKLRS  154 (204)
Q Consensus        80 l~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~  154 (204)
                      +++|.+....+..  +..+++|++|++++|.+.+..+ ..++.+++|+.|++++|.+.....     ..+..+  ++|+.
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-----~~l~~l~~~~L~~  178 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-----HELEPLQGKTLSF  178 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-----GGGHHHHHCSSCC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-----HHcccccCCccce
Confidence            9888887545544  7888889999998888876544 468888899999998888876633     344444  78888


Q ss_pred             EEeeCCcCCCCCCccccccc-----cCccEEEeeccccccccchhhhh
Q 047496          155 LNLIGNPLDGFLPSSIGNLS-----MSLETLLITNCSISGNIPQAIST  197 (204)
Q Consensus       155 l~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~  197 (204)
                      |++++|.+.+..+..+....     .+|+.|++++|.+++..|..+..
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  226 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN  226 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence            88888888877776655443     13899999999888777776664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1e-22  Score=160.22  Aligned_cols=189  Identities=20%  Similarity=0.178  Sum_probs=150.5

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCc----------------cccCCCccceeeecCCcceeec
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSA----------------PIFNMSTLKIIILINNSLFGSL   64 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~l~~L~~L~l~~~~~~~~~   64 (204)
                      +|++|++++|.+.+..+  +..+++|++|++++|.+++..+.                ....+++|+.|++++|.+.+..
T Consensus        59 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~  136 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR  136 (487)
T ss_dssp             TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGG
T ss_pred             CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCC
Confidence            47888999888875554  77888888888888877653211                0123577888999999887544


Q ss_pred             CCccCCCCCCccEEEcCCCcCccCCCcccc-CCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhh
Q 047496           65 PSRIGLSLPTVEHLNLELNRFSGTIPSSIT-NASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL  143 (204)
Q Consensus        65 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  143 (204)
                      |..+. .+++|+.|++++|.+....+..+. .+++|++|++++|.+++.  .....+++|+.|++++|.+..++      
T Consensus       137 ~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~------  207 (487)
T 3oja_A          137 DLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMG------  207 (487)
T ss_dssp             GBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEEC------
T ss_pred             chhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCCC------
Confidence            55554 789999999999999866676665 789999999999999865  33446999999999999998876      


Q ss_pred             hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc-cccchhhhhhhhhc
Q 047496          144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS-GNIPQAISTKYLFQ  202 (204)
Q Consensus       144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~l~  202 (204)
                      ..+..+++|+.|++++|.++ .+|..+..++ +|+.|++++|.+. +.+|..+..++.++
T Consensus       208 ~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             HhHcCCCCccEEEecCCcCc-ccchhhccCC-CCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            35778899999999999999 4777888887 9999999999998 67778887776654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=2.4e-21  Score=146.25  Aligned_cols=183  Identities=26%  Similarity=0.463  Sum_probs=137.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.. ++. +..+++|+.|++++|......+. +..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus       111 ~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~-~l~~L~~L~l  184 (347)
T 4fmz_A          111 NLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IA-NLTDLYSLSL  184 (347)
T ss_dssp             TCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCSEEEC
T ss_pred             cCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hc-cCCCCCEEEc
Confidence            48999999999884 333 88999999999999976544443 888999999999999986 4443 33 7899999999


Q ss_pred             CCCcCccCCCc---------------------cccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCccc
Q 047496           81 ELNRFSGTIPS---------------------SITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSK  139 (204)
Q Consensus        81 ~~~~~~~~~~~---------------------~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  139 (204)
                      .+|.+. ..+.                     .+..+++|++|++++|.++...+  +..+++|+.|++++|.+...   
T Consensus       185 ~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---  258 (347)
T 4fmz_A          185 NYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI---  258 (347)
T ss_dssp             TTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---
T ss_pred             cCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC---
Confidence            999876 2222                     13344556666666666553322  66667777777777766654   


Q ss_pred             chhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       140 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                          +.+..+++|++|++++|.+++.  ..+..++ +|+.|++++|.+++..|..|+.++.|+
T Consensus       259 ----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          259 ----NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             ----GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             ----hhHhcCCCcCEEEccCCccCCC--hhhcCCC-CCCEEECcCCcCCCcChhHhhccccCC
Confidence                3567788899999999888753  4566776 899999999999988888898888775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.4e-21  Score=144.06  Aligned_cols=168  Identities=24%  Similarity=0.379  Sum_probs=143.8

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+ ++. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus        64 ~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l  136 (308)
T 1h6u_A           64 NLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVTP-LA-GLSNLQVLYL  136 (308)
T ss_dssp             TCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCC-CCGG-GT-TCTTCCEEEC
T ss_pred             CCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCC-Cchh-hc-CCCCCCEEEC
Confidence            47899999999884 444 89999999999999999865  35888999999999999997 4554 44 8999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+. ..+. +..+++|++|++++|.+++.. . +..+++|+.|++++|.+...+       .+..+++|++|++++|
T Consensus       137 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          137 DLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISDIS-------PLASLPNLIEVHLKNN  205 (308)
T ss_dssp             CSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCG-------GGGGCTTCCEEECTTS
T ss_pred             CCCccC-cCcc-ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCcCh-------hhcCCCCCCEEEccCC
Confidence            999997 4443 889999999999999998643 3 889999999999999998875       3778999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeecccccc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  189 (204)
                      .+++..  .+..++ +|+.|++++|.+++
T Consensus       206 ~l~~~~--~l~~l~-~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          206 QISDVS--PLANTS-NLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCBCG--GGTTCT-TCCEEEEEEEEEEC
T ss_pred             ccCccc--cccCCC-CCCEEEccCCeeec
Confidence            998544  377777 99999999999985

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.88  E-value=1.7e-21  Score=143.73  Aligned_cols=169  Identities=25%  Similarity=0.362  Sum_probs=144.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus        47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~L  119 (291)
T 1h6t_A           47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LK-DLKKLKSLSL  119 (291)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCCEEEC
T ss_pred             cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-hc-cCCCCCEEEC
Confidence            47899999998873 33 48899999999999999997655  889999999999999987 4443 54 8999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+. .. ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+...+       .+..+++|++|++++|
T Consensus       120 ~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-------~l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          120 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKN  188 (291)
T ss_dssp             TTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             CCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-------hhcCCCccCEEECCCC
Confidence            999997 33 5688999999999999999865  67889999999999999998875       2788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      .+++ ++ .+..++ +|+.|++++|.++..
T Consensus       189 ~i~~-l~-~l~~l~-~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          189 HISD-LR-ALAGLK-NLDVLELFSQECLNK  215 (291)
T ss_dssp             CCCB-CG-GGTTCT-TCSEEEEEEEEEECC
T ss_pred             cCCC-Ch-hhccCC-CCCEEECcCCcccCC
Confidence            9985 33 477887 999999999998754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=4.6e-22  Score=139.89  Aligned_cols=161  Identities=22%  Similarity=0.266  Sum_probs=140.1

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence            4789999999998666667889999999999999999887777889999999999999997 677666558999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.            ..+++|++++++.|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------CTCPGIRYLSEWIN  175 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------------CCTTTTHHHHHHHH
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------------cCCCCHHHHHHHHH
Confidence            999998555556789999999999999999776667899999999999999654            34578999999999


Q ss_pred             cCCCCCCccccccc
Q 047496          161 PLDGFLPSSIGNLS  174 (204)
Q Consensus       161 ~~~~~~~~~~~~~~  174 (204)
                      .+++.+|.+++.+.
T Consensus       176 ~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          176 KHSGVVRNSAGSVA  189 (208)
T ss_dssp             HCTTTBBCTTSSBC
T ss_pred             hCCceeeccCcccc
Confidence            99999999888776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.88  E-value=7.9e-22  Score=156.34  Aligned_cols=159  Identities=18%  Similarity=0.245  Sum_probs=101.4

Q ss_pred             cCCCCCcEEEccCccccccCCccccCCCccceeeecCCccee--ecCCccCCCCCCccEEEcCCCcCccCCCcc-ccCCC
Q 047496           21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFG--SLPSRIGLSLPTVEHLNLELNRFSGTIPSS-ITNAS   97 (204)
Q Consensus        21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~   97 (204)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+  .+|..+. .+++|++|++++|.+...++.. +..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCc
Confidence            456667777777777666566666667777777777776653  2333333 5677777777777766434433 55666


Q ss_pred             CCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc-ccccccC
Q 047496           98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS-IGNLSMS  176 (204)
Q Consensus        98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~  176 (204)
                      +|++|++++|.+++..+..+.  ++|+.|++++|.+..+|      ..+..+++|++|++++|.++ .+|.. +..++ +
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~-~  469 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP------KQVVKLEALQELNVASNQLK-SVPDGIFDRLT-S  469 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC------GGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT-T
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc------hhhhcCCCCCEEECCCCcCC-ccCHHHhccCC-c
Confidence            777777777766655544443  56777777777776655      33446777777777777777 34444 55665 7


Q ss_pred             ccEEEeeccccccc
Q 047496          177 LETLLITNCSISGN  190 (204)
Q Consensus       177 L~~L~l~~n~~~~~  190 (204)
                      |++|++++|+++..
T Consensus       470 L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          470 LQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCEEECCSSCBCCC
T ss_pred             ccEEECcCCCCccc
Confidence            77777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=150.24  Aligned_cols=178  Identities=17%  Similarity=0.195  Sum_probs=144.5

Q ss_pred             CcceEEccCCccccccC----hhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceee--cC-CccCCCCC
Q 047496            1 MLKGIYLGYNKLHGEIP----HEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGS--LP-SRIGLSLP   73 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~~~~~~   73 (204)
                      +|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.  ++ ......++
T Consensus       118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  197 (310)
T 4glp_A          118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP  197 (310)
T ss_dssp             CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred             CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence            47899999999986544    3445799999999999999988888899999999999999987632  32 22224789


Q ss_pred             CccEEEcCCCcCccCCCc----cccCCCCCCEEeccCCcccccccccccCC---CCCcEEEccCccCCCCcccchhhhcc
Q 047496           74 TVEHLNLELNRFSGTIPS----SITNASKLTLLKLGGNTFSGLIPDTIGNL---RNLEWLGLAYNNLTSSTSKLSFLSSL  146 (204)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~  146 (204)
                      +|++|++++|.++ ..+.    .+..+++|++|++++|.+.+..|..+..+   ++|+.|++++|.+..+|.      .+
T Consensus       198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~  270 (310)
T 4glp_A          198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK------GL  270 (310)
T ss_dssp             CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS------CC
T ss_pred             CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh------hh
Confidence            9999999999986 3333    24677999999999999998777777766   699999999999998764      23


Q ss_pred             ccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccc
Q 047496          147 ANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       147 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      .  ++|++|++++|.+++. |. +..++ +|+.|++++|++++.
T Consensus       271 ~--~~L~~L~Ls~N~l~~~-~~-~~~l~-~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          271 P--AKLRVLDLSSNRLNRA-PQ-PDELP-EVDNLTLDGNPFLVP  309 (310)
T ss_dssp             C--SCCSCEECCSCCCCSC-CC-TTSCC-CCSCEECSSTTTSCC
T ss_pred             c--CCCCEEECCCCcCCCC-ch-hhhCC-CccEEECcCCCCCCC
Confidence            2  7999999999999953 33 55666 999999999999753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=3.9e-22  Score=158.99  Aligned_cols=189  Identities=22%  Similarity=0.257  Sum_probs=132.0

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+++..+..+++|++|++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEEC
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEEC
Confidence            3788999999888777778888999999999999888887788888899999999999887 455543337888999999


Q ss_pred             CCCcCcc-CCCccccCCCCCCEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccc-----------
Q 047496           81 ELNRFSG-TIPSSITNASKLTLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLA-----------  147 (204)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-----------  147 (204)
                      ++|.+.. ..+..+..+++|++|++++|...+.. +..+..+++|+.|++++|.+....+     ..+.           
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-----QSLKSIRDIHHLTLH  180 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-----TTTTTCSEEEEEEEE
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-----hhhhccccCceEecc
Confidence            9888874 34567788888888888888743333 3567888888888888887765321     2233           


Q ss_pred             -------------cCCCccEEEeeCCcCCCCC--CccccccccCccEEEeeccccccccchhh
Q 047496          148 -------------NCKKLRSLNLIGNPLDGFL--PSSIGNLSMSLETLLITNCSISGNIPQAI  195 (204)
Q Consensus       148 -------------~~~~L~~l~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  195 (204)
                                   .+++|+++++++|.+++..  +..+.....+|+.|++++|.+++..+..+
T Consensus       181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  243 (549)
T 2z81_A          181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL  243 (549)
T ss_dssp             CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred             cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence                         3456666666666655421  22222222366666666666665544433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=2.6e-21  Score=154.75  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=122.0

Q ss_pred             cCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecC---CccCCCCCCccEEEcCCCcCccCCCc-cccCC
Q 047496           21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP---SRIGLSLPTVEHLNLELNRFSGTIPS-SITNA   96 (204)
Q Consensus        21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~   96 (204)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++   ..+. .+++|++|++++|.+...++. .+..+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-Ccccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCc
Confidence            56788888888888888877777888888888888888876 333   3333 788888888888888753554 46777


Q ss_pred             CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc-cccccc
Q 047496           97 SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS-IGNLSM  175 (204)
Q Consensus        97 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~  175 (204)
                      ++|++|++++|.+++..+..+.  ++|+.|++++|.+..+|.      .+..+++|++|++++|.++ .+|.. +..++ 
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~------~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~-  497 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK------DVTHLQALQELNVASNQLK-SVPDGVFDRLT-  497 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT------TTTSSCCCSEEECCSSCCC-CCCTTSTTTCT-
T ss_pred             ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh------hhcCCCCCCEEECCCCCCC-CCCHHHHhcCC-
Confidence            8888888888888765555443  688889998888887763      4457888899999999888 45555 67777 


Q ss_pred             CccEEEeeccccccccc
Q 047496          176 SLETLLITNCSISGNIP  192 (204)
Q Consensus       176 ~L~~L~l~~n~~~~~~~  192 (204)
                      +|+.|++++|++....+
T Consensus       498 ~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          498 SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCCCEECCSCCBCCCHH
T ss_pred             CCCEEEecCCCcCCCcc
Confidence            88899999988876443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=2e-21  Score=154.87  Aligned_cols=174  Identities=20%  Similarity=0.267  Sum_probs=143.6

Q ss_pred             EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496            5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR   84 (204)
Q Consensus         5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   84 (204)
                      .+.+++.+. .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~   85 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNH   85 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSC
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCc
Confidence            456666666 6676554  7999999999999988888899999999999999999844444454 89999999999999


Q ss_pred             CccCCCccccCCCCCCEEeccCCccccc-ccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496           85 FSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNLIGNPL  162 (204)
Q Consensus        85 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  162 (204)
                      +....+..+..+++|++|++++|.+++. .+..++.+++|+.|++++|. +..++.     ..+.++++|++|++++|.+
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-----IDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEETTC
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH-----hhhhcccccCeeeccCCcc
Confidence            9855555689999999999999999853 46779999999999999998 444432     4688899999999999999


Q ss_pred             CCCCCccccccccCccEEEeeccccc
Q 047496          163 DGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      ++..|..+..++ +|++|++++|.+.
T Consensus       161 ~~~~~~~l~~l~-~L~~L~l~~n~~~  185 (549)
T 2z81_A          161 RNYQSQSLKSIR-DIHHLTLHLSESA  185 (549)
T ss_dssp             CEECTTTTTTCS-EEEEEEEECSBST
T ss_pred             cccChhhhhccc-cCceEecccCccc
Confidence            988888887776 7777777777665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=2.9e-21  Score=146.62  Aligned_cols=179  Identities=19%  Similarity=0.222  Sum_probs=143.3

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCcccc-CCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      +.++++++++. .+|..+.  ..++.|++++|.+++..+..+. .+++|++|++++|.+. .+++..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            46778888777 5666544  4689999999999988887777 8999999999999997 5665555589999999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..++...  ...+..+++|++|++++|.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG--TC----CTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH--hcCcccCCcCCEEECCCCC
Confidence            99998555667889999999999999999777888999999999999999999887421  1112568899999999999


Q ss_pred             CCCCCCccccccccC--ccEEEeeccccc
Q 047496          162 LDGFLPSSIGNLSMS--LETLLITNCSIS  188 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~--L~~L~l~~n~~~  188 (204)
                      +++..+..+..++ .  ++.|++++|.+.
T Consensus       175 l~~l~~~~~~~l~-~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LKKLPLTDLQKLP-AWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCHHHHHHSC-HHHHTTEECCSSCEE
T ss_pred             CCccCHHHhhhcc-HhhcceEEecCCCcc
Confidence            9855545666665 4  588999999886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.86  E-value=1.5e-20  Score=147.28  Aligned_cols=160  Identities=28%  Similarity=0.431  Sum_probs=81.6

Q ss_pred             CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496           22 NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL  101 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  101 (204)
                      .+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+ .++ +. .+++|++|++++|.+. ..+. +..+++|++
T Consensus       219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~  291 (466)
T 1o6v_A          219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-LS-GLTKLTELKLGANQIS-NISP-LAGLTALTN  291 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCC-CCGG-GTTCTTCSE
T ss_pred             ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh-hh-cCCCCCEEECCCCccC-cccc-ccCCCccCe
Confidence            334444444444443322  123344555555555555442 222 22 4555555555555554 2222 455555666


Q ss_pred             EeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEE
Q 047496          102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL  181 (204)
Q Consensus       102 l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~  181 (204)
                      |++++|.+.+..+  +..+++|+.|++++|.+.+.+       .+..+++|++|++++|.+++.  ..+..++ +|+.|+
T Consensus       292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~  359 (466)
T 1o6v_A          292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS-------PVSSLTKLQRLFFYNNKVSDV--SSLANLT-NINWLS  359 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG-------GGGGCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEE
T ss_pred             EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch-------hhccCccCCEeECCCCccCCc--hhhccCC-CCCEEe
Confidence            6666655554322  555566666666666555543       144556666666666666532  3455555 666666


Q ss_pred             eeccccccccchhhhhhhhhc
Q 047496          182 ITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       182 l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +++|++++..|  +..++.|+
T Consensus       360 l~~n~l~~~~~--~~~l~~L~  378 (466)
T 1o6v_A          360 AGHNQISDLTP--LANLTRIT  378 (466)
T ss_dssp             CCSSCCCBCGG--GTTCTTCC
T ss_pred             CCCCccCccch--hhcCCCCC
Confidence            66666665554  55555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=6.7e-21  Score=153.92  Aligned_cols=142  Identities=21%  Similarity=0.233  Sum_probs=77.5

Q ss_pred             CCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEec
Q 047496           25 NLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKL  104 (204)
Q Consensus        25 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  104 (204)
                      ++++|++++|.++...+..|.++++|++|++++|.+. .++++.+..+++|++|++++|.+....+..|..+++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4556666666665555555555666666666666554 444444445566666666666555322334555566666666


Q ss_pred             cCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccc
Q 047496          105 GGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG  171 (204)
Q Consensus       105 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  171 (204)
                      ++|.+++..+..++.+++|+.|++++|.+...+    .+..+..+++|++|++++|.+++..+..+.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCcccccccccccc
Confidence            666555444445555666666666666554432    113445555566666666655544444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=4.9e-21  Score=154.69  Aligned_cols=194  Identities=22%  Similarity=0.207  Sum_probs=152.1

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|+|++|.+....+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+. .+|+..+..+++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEEC
Confidence            3689999999999666778999999999999999999988889999999999999999997 778777668999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCccccc-ccccccCCCCCcEEEccCccCCCCcccchhhhccccCC-CccEEEee
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK-KLRSLNLI  158 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~  158 (204)
                      .+|.++...+..+..+++|++|++++|.+... .|..++.+++|+.|++++|.+..++..  ....+...+ ....++++
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHHTCTTCCCEEECT
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc--cccchhhhhhhhhhhhcc
Confidence            99999855556789999999999999998753 567889999999999999999876432  112222222 34578899


Q ss_pred             CCcCCCCCCccccccccCccEEEeecccccc-ccchhhhhhh
Q 047496          159 GNPLDGFLPSSIGNLSMSLETLLITNCSISG-NIPQAISTKY  199 (204)
Q Consensus       159 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~  199 (204)
                      .|.+....+..+. .. .++.+++.+|.... ..+..+..+.
T Consensus       210 ~n~l~~i~~~~~~-~~-~~~~l~l~~n~~~~~~~~~~~~~l~  249 (635)
T 4g8a_A          210 LNPMNFIQPGAFK-EI-RLHKLTLRNNFDSLNVMKTCIQGLA  249 (635)
T ss_dssp             TCCCCEECTTTTT-TC-EEEEEEEESCCSSHHHHHHHHHTTT
T ss_pred             cCcccccCccccc-ch-hhhhhhhhcccccccccchhhcCCc
Confidence            9998854444433 33 56788888875442 3334444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.6e-21  Score=138.14  Aligned_cols=172  Identities=20%  Similarity=0.268  Sum_probs=142.5

Q ss_pred             CcceEEccCCc-cccccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCcc--
Q 047496            1 MLKGIYLGYNK-LHGEIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVE--   76 (204)
Q Consensus         1 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--   76 (204)
                      +|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++++|.+. .+|. +. .+++|+  
T Consensus        56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~-~l~~L~~L  132 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LT-KVYSTDIF  132 (239)
T ss_dssp             TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CT-TCCBCCSE
T ss_pred             CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cc-cccccccc
Confidence            47899999997 7755666899999999999999 9999888888999999999999999987 5776 43 788888  


Q ss_pred             -EEEcCCC-cCccCCCccccCCCCCC-EEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchhhhccccC-CC
Q 047496           77 -HLNLELN-RFSGTIPSSITNASKLT-LLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANC-KK  151 (204)
Q Consensus        77 -~L~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~-~~  151 (204)
                       +|++++| .+....+..+..+++|+ ++++++|.++...+..+.. ++|+.|++++|. +..++.     ..+.++ ++
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-----~~~~~l~~~  206 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-----DAFGGVYSG  206 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-----TTTTTCSBC
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-----HHhhccccC
Confidence             9999999 88755556688999999 9999999998443344544 899999999995 887754     567888 99


Q ss_pred             ccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496          152 LRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC  185 (204)
Q Consensus       152 L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  185 (204)
                      |+++++++|.+++ +|..  .+. +|+.|+++++
T Consensus       207 L~~L~l~~N~l~~-l~~~--~~~-~L~~L~l~~~  236 (239)
T 2xwt_C          207 PSLLDVSQTSVTA-LPSK--GLE-HLKELIARNT  236 (239)
T ss_dssp             CSEEECTTCCCCC-CCCT--TCT-TCSEEECTTC
T ss_pred             CcEEECCCCcccc-CChh--Hhc-cCceeeccCc
Confidence            9999999999984 4544  445 8999998876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.86  E-value=1.1e-20  Score=151.65  Aligned_cols=170  Identities=24%  Similarity=0.354  Sum_probs=145.6

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+. .++ .+. .+++|+.|++
T Consensus        44 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~L  116 (605)
T 1m9s_A           44 SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK-DLKKLKSLSL  116 (605)
T ss_dssp             TCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TST-TCTTCCEEEC
T ss_pred             CCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhc-cCCCCCEEEe
Confidence            4788999999887 343 58899999999999999987655  889999999999999987 444 454 7999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+. .+ ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+...+       .+..+++|++|++++|
T Consensus       117 s~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          117 EHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             TTSCCC-CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             cCCCCC-CC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch-------hhccCCCCCEEECcCC
Confidence            999997 33 5688999999999999999865  67899999999999999998775       2788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeecccccccc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNI  191 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  191 (204)
                      .+++ + ..+..++ +|+.|++++|.+++..
T Consensus       186 ~i~~-l-~~l~~l~-~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          186 HISD-L-RALAGLK-NLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCCB-C-GGGTTCT-TCSEEECCSEEEECCC
T ss_pred             CCCC-C-hHHccCC-CCCEEEccCCcCcCCc
Confidence            9985 3 4678887 9999999999998653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.4e-22  Score=152.31  Aligned_cols=193  Identities=15%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCcccccc-CCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++.|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus        72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L  149 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNL  149 (336)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEEC
T ss_pred             ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEEC
Confidence            45556666655533333 34556666666666665543 444455566666666666665544444444 4666666666


Q ss_pred             CCC-cCccC-CCccccCCCCCCEEeccCC-ccccc-ccccccCCC-CCcEEEccCcc--CCCCcccchhhhccccCCCcc
Q 047496           81 ELN-RFSGT-IPSSITNASKLTLLKLGGN-TFSGL-IPDTIGNLR-NLEWLGLAYNN--LTSSTSKLSFLSSLANCKKLR  153 (204)
Q Consensus        81 ~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~  153 (204)
                      .+| .++.. .+..+..+++|++|++++| .+++. .+..+..++ +|+.|++++|.  +++.    .++..+..+++|+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~----~l~~~~~~~~~L~  225 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----DLSTLVRRCPNLV  225 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----HHHHHHHHCTTCS
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH----HHHHHHhhCCCCC
Confidence            666 34321 3333455566666666666 55432 344455555 66666666653  2211    1123444556666


Q ss_pred             EEEeeCCc-CCCCCCccccccccCccEEEeecc-ccccccchhhhhhhhh
Q 047496          154 SLNLIGNP-LDGFLPSSIGNLSMSLETLLITNC-SISGNIPQAISTKYLF  201 (204)
Q Consensus       154 ~l~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~l  201 (204)
                      +|++++|. +++..+..+..++ +|++|++++| .++......++.++.|
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             EEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence            66666665 4444455555554 5666666666 3332222234444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=2.9e-20  Score=148.07  Aligned_cols=173  Identities=21%  Similarity=0.264  Sum_probs=108.3

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+. .+|   ..+++|+.|++++|.+++ .|. +..  +|++|++++|.++ .+|.    .+++|+.|+++
T Consensus        82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls  148 (571)
T 3cvr_A           82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINAD  148 (571)
T ss_dssp             CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECC
T ss_pred             CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCC
Confidence            344444444444 333   234555555555555554 222 322  5566666666554 2444    35666666666


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhcc-ccCCCccEEEeeCC
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL-ANCKKLRSLNLIGN  160 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~n  160 (204)
                      +|.++ .+|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++.+|. +  ...+ ...+.|+.|++++|
T Consensus       149 ~N~l~-~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~--~~~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          149 NNQLT-MLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-V--PVRNHHSEETEIFFRCREN  217 (571)
T ss_dssp             SSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-C--C--------CCEEEECCSS
T ss_pred             CCccC-cCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-H--HHhhhcccccceEEecCCC
Confidence            66665 3443   45677777777777775 444 44  778888888888877663 1  1100 11122399999999


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL  200 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  200 (204)
                      .++ .+|..+..++ +|+.|++++|.+++.+|..|+.+..
T Consensus       218 ~l~-~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          218 RIT-HIPENILSLD-PTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCC-CCCGGGGGSC-TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cce-ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            998 6888888887 8999999999999999999888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=6.4e-22  Score=147.75  Aligned_cols=185  Identities=19%  Similarity=0.197  Sum_probs=123.8

Q ss_pred             EEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc
Q 047496            5 IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR   84 (204)
Q Consensus         5 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   84 (204)
                      .+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+  +. .+++|++|++++|.
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNY   91 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-TCTTCCEEECCSSE
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-hcCCCCEEECcCCc
Confidence            3444444443333445567899999999999998888889999999999999999974443  43 78999999999987


Q ss_pred             CccCCC----------------ccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhcc-c
Q 047496           85 FSGTIP----------------SSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL-A  147 (204)
Q Consensus        85 ~~~~~~----------------~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~  147 (204)
                      +....+                .....+++|++|++++|.+++..+..+..+++|+.|++++|.+...+.     ..+ .
T Consensus        92 l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~  166 (317)
T 3o53_A           92 VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-----AELAA  166 (317)
T ss_dssp             EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-----GGGGG
T ss_pred             cccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-----HHHhh
Confidence            652100                001235678888888888887777788899999999999999887642     222 3


Q ss_pred             cCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          148 NCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       148 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      .+++|++|++++|.+++. +.. ..++ +|++|++++|.+++. |..|..++.|
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~~~-~~l~-~L~~L~Ls~N~l~~l-~~~~~~l~~L  216 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-KGQ-VVFA-KLKTLDLSSNKLAFM-GPEFQSAAGV  216 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-ECC-CCCT-TCCEEECCSSCCCEE-CGGGGGGTTC
T ss_pred             ccCcCCEEECCCCcCccc-ccc-cccc-cCCEEECCCCcCCcc-hhhhcccCcc
Confidence            455666666666665532 111 1233 555555555555532 2234444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1.4e-22  Score=152.33  Aligned_cols=193  Identities=17%  Similarity=0.186  Sum_probs=137.3

Q ss_pred             CcceEEccCCccccc-cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCC-cceee-cCCccCCCCCCccE
Q 047496            1 MLKGIYLGYNKLHGE-IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINN-SLFGS-LPSRIGLSLPTVEH   77 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~~L~~   77 (204)
                      +|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~  172 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDE  172 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCE
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCE
Confidence            478899999988755 6777888899999999999888777777788899999999988 56532 333333 6888999


Q ss_pred             EEcCCC-cCccC-CCccccCCC-CCCEEeccCCc--cc-ccccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCC
Q 047496           78 LNLELN-RFSGT-IPSSITNAS-KLTLLKLGGNT--FS-GLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCK  150 (204)
Q Consensus        78 L~l~~~-~~~~~-~~~~~~~~~-~L~~l~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~  150 (204)
                      |++.+| .++.. .+..+..++ +|++|++++|.  ++ ...+..+..+++|+.|++++|. +++..     +..+..++
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-----~~~l~~l~  247 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-----FQEFFQLN  247 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-----GGGGGGCT
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-----HHHHhCCC
Confidence            999988 77632 355567778 88888888884  44 3445667778888888888887 44331     24667778


Q ss_pred             CccEEEeeCCc-CCCCCCccccccccCccEEEeeccccccccchhhh-hhhhh
Q 047496          151 KLRSLNLIGNP-LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS-TKYLF  201 (204)
Q Consensus       151 ~L~~l~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~l  201 (204)
                      +|++|++++|. +.......+..++ +|+.|++++| ++......+. .++.|
T Consensus       248 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~~~~~~l~~~l~~L  298 (336)
T 2ast_B          248 YLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPDGTLQLLKEALPHL  298 (336)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCTTCHHHHHHHSTTS
T ss_pred             CCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCHHHHHHHHhhCcce
Confidence            88888888884 4433333566666 8888888888 5544434443 24443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.85  E-value=1.2e-20  Score=131.60  Aligned_cols=154  Identities=21%  Similarity=0.285  Sum_probs=129.1

Q ss_pred             cCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCC
Q 047496           21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLT  100 (204)
Q Consensus        21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  100 (204)
                      +.+++|+.|++++|.+... + .+..+++|++|++++|.+. . ++.+. .+++|++|++++|.+....+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-~-~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-N-YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-C-CGGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-c-chhhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            5678999999999999854 3 4788999999999999764 3 33454 799999999999999866788899999999


Q ss_pred             EEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccE
Q 047496          101 LLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET  179 (204)
Q Consensus       101 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~  179 (204)
                      +|++++|.+++..+..+..+++|+.|++++|. +..++       .+..+++|++|++++|.+++ ++ .+..++ +|++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-------~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-~L~~  185 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-------PLKTLPELKSLNIQFDGVHD-YR-GIEDFP-KLNQ  185 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-------GGGGCSSCCEEECTTBCCCC-CT-TGGGCS-SCCE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-------hhcCCCCCCEEECCCCCCcC-hH-HhccCC-CCCE
Confidence            99999999998778889999999999999998 76663       57889999999999999985 34 677887 9999


Q ss_pred             EEeecccccc
Q 047496          180 LLITNCSISG  189 (204)
Q Consensus       180 L~l~~n~~~~  189 (204)
                      |++++|+|.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            9999999864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.85  E-value=4.9e-20  Score=130.63  Aligned_cols=151  Identities=23%  Similarity=0.276  Sum_probs=89.6

Q ss_pred             eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496            4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN   83 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   83 (204)
                      .++++++.+. .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGN   90 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSS
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCC
Confidence            4555555554 4444333  4666666666666665555666666666666666666533333333 5666666666666


Q ss_pred             cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      .++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..++.     ..+..+++|+++++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-----GTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-----HHHhCCCCCCEEEeCCCCcC
Confidence            6663223334566666666666666665555666666666666666666666543     34555666666666666653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.85  E-value=2.7e-20  Score=145.80  Aligned_cols=168  Identities=26%  Similarity=0.371  Sum_probs=142.5

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+ + +.+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++. +. .+++|+.|++
T Consensus       222 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~L  294 (466)
T 1o6v_A          222 NLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LA-GLTALTNLEL  294 (466)
T ss_dssp             TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GT-TCTTCSEEEC
T ss_pred             CCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-cc-CCCccCeEEc
Confidence            36778888887763 2 468889999999999999987654  788999999999999987 4444 44 7999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+. ..+. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.+       .+..+++|++|++++|
T Consensus       295 ~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          295 NENQLE-DISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-------SLANLTNINWLSAGHN  363 (466)
T ss_dssp             CSSCCS-CCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             CCCccc-Cchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-------hhccCCCCCEEeCCCC
Confidence            999987 3333 7889999999999999987654  789999999999999998763       5788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeecccccc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISG  189 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  189 (204)
                      .+++..|  +..++ +|+.|++++|.+++
T Consensus       364 ~l~~~~~--~~~l~-~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          364 QISDLTP--LANLT-RITQLGLNDQAWTN  389 (466)
T ss_dssp             CCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred             ccCccch--hhcCC-CCCEEeccCCcccC
Confidence            9987665  77777 99999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.84  E-value=3.5e-20  Score=129.23  Aligned_cols=150  Identities=17%  Similarity=0.278  Sum_probs=126.9

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+. .++ .+..+++|++|++++|.+...  ..+..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCEEEC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCEEEe
Confidence            4789999999988 556 688999999999999976543  4678899999999999999865677766 8999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCc-ccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNT-FSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      ++|.+....+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|.+.+++       .+..+++|++|++++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-------~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-------GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-------TGGGCSSCCEEEECB
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-------HhccCCCCCEEEeeC
Confidence            9999986677888999999999999998 66 444 6899999999999999998764       577889999999999


Q ss_pred             CcCCC
Q 047496          160 NPLDG  164 (204)
Q Consensus       160 n~~~~  164 (204)
                      |.+.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            99864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=9.4e-20  Score=129.96  Aligned_cols=151  Identities=24%  Similarity=0.262  Sum_probs=98.3

Q ss_pred             eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496            4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN   83 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   83 (204)
                      .++.+++++. .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|
T Consensus        23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCC
Confidence            4555555554 4444333  66777777777777666666667777777777777764 556555546777777777777


Q ss_pred             cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      .++...+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+..++.     ..+..+++|+++++++|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-----GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-----HHHhCCCCCCEEEeeCCCcc
Confidence            776433444566777777777777766 456666667777777777777766643     34566667777777777665


Q ss_pred             C
Q 047496          164 G  164 (204)
Q Consensus       164 ~  164 (204)
                      .
T Consensus       173 c  173 (229)
T 3e6j_A          173 C  173 (229)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=1.2e-19  Score=141.68  Aligned_cols=180  Identities=18%  Similarity=0.204  Sum_probs=92.5

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+.+ +| .++.+++|++|++++|.+++. +  +..+++|++|++++|.+.+ ++  +. .+++|++|+++
T Consensus        44 L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~-~l~~L~~L~L~  114 (457)
T 3bz5_A           44 LTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VT-PLTKLTYLNCD  114 (457)
T ss_dssp             CCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CT-TCTTCCEEECC
T ss_pred             CCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cC-CCCcCCEEECC
Confidence            5667777776663 23 466666677777776666654 1  5556666666666666542 22  22 45555555555


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccc-------------------cccccCCCCCcEEEccCccCCCCcccc--
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLI-------------------PDTIGNLRNLEWLGLAYNNLTSSTSKL--  140 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~--  140 (204)
                      +|.+.. ++  +..+++|++|++++|.+++..                   ...+..+++|+.|++++|.+..++...  
T Consensus       115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~  191 (457)
T 3bz5_A          115 TNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK  191 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCT
T ss_pred             CCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCC
Confidence            555542 22  444445555555544443210                   002333444555555555444432000  


Q ss_pred             ------------hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496          141 ------------SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK  198 (204)
Q Consensus       141 ------------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  198 (204)
                                  .. ..+..+++|++|++++|.+++ +|  +..++ +|+.|++++|.+++..+..+..+
T Consensus       192 ~L~~L~l~~N~l~~-~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          192 LLNRLNCDTNNITK-LDLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             TCCEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCCCTTCTTC
T ss_pred             CCCEEECcCCcCCe-eccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcCHHHCCCC
Confidence                        00 014445566666666666664 33  44555 66666666666665544444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=7.5e-20  Score=129.68  Aligned_cols=133  Identities=22%  Similarity=0.247  Sum_probs=61.7

Q ss_pred             cceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEcc
Q 047496           50 LKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA  129 (204)
Q Consensus        50 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~  129 (204)
                      +++|++++|.+.+..+...+..+++|+.|++.+|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            34445555444422232322244445555555554443333344444555555555555544444444455555555555


Q ss_pred             CccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccc
Q 047496          130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +|.+..+++     ..+..+++|++|++++|.+++..|..|..++ +|+.|++++|.++
T Consensus       114 ~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~  166 (220)
T 2v70_A          114 SNRITCVGN-----DSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPFN  166 (220)
T ss_dssp             TSCCCCBCT-----TSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCEE
T ss_pred             CCcCCeECH-----hHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCCc
Confidence            555444422     2344445555555555555444444444444 4555555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=1e-19  Score=128.98  Aligned_cols=154  Identities=18%  Similarity=0.223  Sum_probs=132.6

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      -+.++++++.++.. |..+.  ++++.|++++|.+. .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        13 ~~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            36889999988865 33332  68999999999998 6666555589999999999999986778899999999999999


Q ss_pred             CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496          106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC  185 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  185 (204)
                      +|.++...+..+..+++|+.|++++|.+..++.     ..+..+++|++|++++|.+++..+..+..++ +|++|++++|
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N  162 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRV-----DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQN  162 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSS
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCH-----HHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCC
Confidence            999997666678999999999999999988854     5788999999999999999977777788888 9999999999


Q ss_pred             cccc
Q 047496          186 SISG  189 (204)
Q Consensus       186 ~~~~  189 (204)
                      .+.-
T Consensus       163 ~~~c  166 (220)
T 2v9t_B          163 PFIC  166 (220)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            9864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=7.7e-20  Score=129.61  Aligned_cols=154  Identities=21%  Similarity=0.259  Sum_probs=131.4

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCC-ccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS-APIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++++++++.+. .+|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.++ .+++..+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence            57889999887 5676554  467899999999998744 55789999999999999998 5665555589999999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...++     ..+..+++|++|++++|.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-----GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-----TTTTTCTTCCEEECCSCC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-----HHhcCCCCCCEEEecCcC
Confidence            999985556678999999999999999998888899999999999999999988843     578889999999999999


Q ss_pred             CCCC
Q 047496          162 LDGF  165 (204)
Q Consensus       162 ~~~~  165 (204)
                      +...
T Consensus       165 l~c~  168 (220)
T 2v70_A          165 FNCN  168 (220)
T ss_dssp             EECS
T ss_pred             CcCC
Confidence            8643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.84  E-value=1.8e-20  Score=136.37  Aligned_cols=166  Identities=22%  Similarity=0.286  Sum_probs=131.0

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      +.++++++.+.+ ++ .+..+++|+.|++++|.++...  .+..+++|+.|++++|.+. .+++ +. .+++|++|++++
T Consensus        22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~L~L~~   94 (263)
T 1xeu_A           22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCS
T ss_pred             HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCEEECCC
Confidence            345677777663 33 4678899999999999888543  5778899999999999887 5555 44 789999999999


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL  162 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  162 (204)
                      |.+. .++.. .. ++|++|++++|.+++.  ..+..+++|+.|++++|.+.+.+       .+..+++|++|++++|.+
T Consensus        95 N~l~-~l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-------~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           95 NRLK-NLNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-------MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             SCCS-CCTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-------GGGGCTTCCEEECTTSCC
T ss_pred             CccC-CcCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-------HHccCCCCCEEECCCCcC
Confidence            9887 44442 33 8899999999988854  45888999999999999888763       577788999999999999


Q ss_pred             CCCCCccccccccCccEEEeeccccccc
Q 047496          163 DGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      ++.  ..+..++ +|+.|++++|.++..
T Consensus       163 ~~~--~~l~~l~-~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLK-KVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCC-CCCEEEEEEEEEECC
T ss_pred             cch--HHhccCC-CCCEEeCCCCcccCC
Confidence            855  6677777 899999999988755

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.84  E-value=2.3e-19  Score=140.09  Aligned_cols=97  Identities=18%  Similarity=0.179  Sum_probs=62.2

Q ss_pred             ccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccc
Q 047496           93 ITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN  172 (204)
Q Consensus        93 ~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  172 (204)
                      +..+++|++|++++|.+++.   .++.+++|+.|++++|.+..+|        +..+++|++|++++|.+++..+..+..
T Consensus       187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--------~~~l~~L~~L~l~~N~l~~~~~~~l~~  255 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--------VTPLTQLTYFDCSVNPLTELDVSTLSK  255 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred             cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--------ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence            34445555555555555533   2566777888888888777653        667899999999999999765444433


Q ss_pred             cc------cCccEEEeeccccccccchhhhhhhhhc
Q 047496          173 LS------MSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       173 ~~------~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +.      .+|+.|++++|.+.+.+|  ++.++.|+
T Consensus       256 L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~  289 (457)
T 3bz5_A          256 LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIK  289 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred             CCEEeccCCCCCEEECCCCccCCccc--ccccccCC
Confidence            32      145667777777666666  34444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=6.1e-22  Score=150.39  Aligned_cols=193  Identities=22%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             CcceEEccCCccccccC----hhccCCC-CCcEEEccCccccccCCccccCC-----CccceeeecCCcceeecCCccC-
Q 047496            1 MLKGIYLGYNKLHGEIP----HEIANLR-NLEALALGMNNLVGVVSAPIFNM-----STLKIIILINNSLFGSLPSRIG-   69 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~-   69 (204)
                      +|++|++++|.+.+..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+.+..+..+. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            37788888888875555    5667777 78888888888887666555543     7888888888887643333221 


Q ss_pred             --CCC-CCccEEEcCCCcCccCCCcccc----C-CCCCCEEeccCCccccccc----ccccCCC-CCcEEEccCccCCCC
Q 047496           70 --LSL-PTVEHLNLELNRFSGTIPSSIT----N-ASKLTLLKLGGNTFSGLIP----DTIGNLR-NLEWLGLAYNNLTSS  136 (204)
Q Consensus        70 --~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~  136 (204)
                        ..+ ++|++|++++|.++...+..+.    . .++|++|++++|.+.+...    ..+..++ +|+.|++++|.+...
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence              133 6788888888887644333332    2 2577888888777764332    3344444 777777777777655


Q ss_pred             cccchhhhccccC-CCccEEEeeCCcCCCC----CCccccccccCccEEEeeccccccccchh
Q 047496          137 TSKLSFLSSLANC-KKLRSLNLIGNPLDGF----LPSSIGNLSMSLETLLITNCSISGNIPQA  194 (204)
Q Consensus       137 ~~~~~~~~~~~~~-~~L~~l~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  194 (204)
                      +.. .+...+..+ ++|++|++++|.+.+.    ++..+....++|++|++++|.+++..+..
T Consensus       183 ~~~-~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          183 NCA-ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             CHH-HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred             hHH-HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence            321 122344445 3777777777776643    22333333236777777777776654433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=3.6e-20  Score=140.08  Aligned_cols=192  Identities=18%  Similarity=0.152  Sum_probs=126.3

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCcccccc-CCccccCCCccce-eeecCCcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKI-IILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      +++|+|++|++....+..|..+++|++|++++|.+.+. .+..|.+++++++ +.+.++.+. .+++..+..+++|++|+
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccccccc
Confidence            56777777777744444677777788888877776543 3455667776654 444556665 55555555777788888


Q ss_pred             cCCCcCccCCCccccCCCCCCEEeccCC-cccccccccccCC-CCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496           80 LELNRFSGTIPSSITNASKLTLLKLGGN-TFSGLIPDTIGNL-RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL  157 (204)
Q Consensus        80 l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  157 (204)
                      +.+|.+....+..+....++..+++.++ .+....+..+..+ ..++.|++++|.+..++.      ......+++++++
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~------~~f~~~~L~~l~l  184 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN------SAFNGTQLDELNL  184 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT------TSSTTEEEEEEEC
T ss_pred             ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh------hhccccchhHHhh
Confidence            8777776333344445556666766543 4443333445554 357888999998887753      2334467888998


Q ss_pred             eC-CcCCCCCC-ccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          158 IG-NPLDGFLP-SSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       158 ~~-n~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .+ |.+. .+| ..|..++ +|+.|++++|+++...+..|.++++|+
T Consensus       185 ~~~n~l~-~i~~~~f~~l~-~L~~LdLs~N~l~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          185 SDNNNLE-ELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLR  229 (350)
T ss_dssp             TTCTTCC-CCCTTTTTTEE-CCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             ccCCccc-CCCHHHhccCc-ccchhhcCCCCcCccChhhhccchHhh
Confidence            76 4555 455 4567777 899999999999866666777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=4.1e-19  Score=126.63  Aligned_cols=158  Identities=21%  Similarity=0.201  Sum_probs=131.3

Q ss_pred             CCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEe
Q 047496           24 RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLK  103 (204)
Q Consensus        24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  103 (204)
                      ..-+.++.+++.++..... +  .++|++|++++|.+.+ +++..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        19 Cs~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             EETTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EeCCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            3467899999888755432 3  3789999999999984 4444444899999999999999844445678999999999


Q ss_pred             ccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEee
Q 047496          104 LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLIT  183 (204)
Q Consensus       104 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~  183 (204)
                      +++|.++...+..+..+++|+.|++++|.+..+|      ..+..+++|++|++++|.+.+..+..+..++ +|+.|+++
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~  167 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP------RGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLF  167 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC------TTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECT
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCcccccC------cccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEee
Confidence            9999999777777899999999999999999876      4678899999999999999966666788887 99999999


Q ss_pred             ccccccccc
Q 047496          184 NCSISGNIP  192 (204)
Q Consensus       184 ~n~~~~~~~  192 (204)
                      +|.+....+
T Consensus       168 ~N~~~c~c~  176 (229)
T 3e6j_A          168 GNPWDCECR  176 (229)
T ss_dssp             TSCBCTTBG
T ss_pred             CCCccCCcc
Confidence            999986543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=8.4e-20  Score=138.60  Aligned_cols=156  Identities=25%  Similarity=0.230  Sum_probs=134.2

Q ss_pred             cceEEccCCccccccChhcc-CCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            2 LKGIYLGYNKLHGEIPHEIA-NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++.|+|++|.+....+..+. .+++|+.|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEEC
Confidence            68999999999977777777 8999999999999999888888999999999999999997 677766668999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccc---cCCCCCcEEEccCccCCCCcccchhhhccccCCC--ccEE
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI---GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKK--LRSL  155 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--L~~l  155 (204)
                      .+|.+....+..+..+++|++|++++|.++...+..+   ..+++|+.|++++|.+..++.     ..+..++.  ++.+
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~l~~~~l~~l  194 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-----TDLQKLPAWVKNGL  194 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-----HHHHHSCHHHHTTE
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-----HHhhhccHhhcceE
Confidence            9999986667889999999999999999996544455   679999999999999998864     45666665  4889


Q ss_pred             EeeCCcCC
Q 047496          156 NLIGNPLD  163 (204)
Q Consensus       156 ~l~~n~~~  163 (204)
                      ++++|.+.
T Consensus       195 ~l~~N~~~  202 (361)
T 2xot_A          195 YLHNNPLE  202 (361)
T ss_dssp             ECCSSCEE
T ss_pred             EecCCCcc
Confidence            99999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=4e-22  Score=152.60  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             CCccEEEcCCCcCcc-CCC---ccccCCCCCCEEeccCCcccc-----cccccccCCCCCcEEEccCccCCCCcccchhh
Q 047496           73 PTVEHLNLELNRFSG-TIP---SSITNASKLTLLKLGGNTFSG-----LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL  143 (204)
Q Consensus        73 ~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  143 (204)
                      ++|++|++++|.++. ..+   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++... ...++
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHH
Confidence            445555555544431 111   123344455555555555441     11224445555555555555543210 00122


Q ss_pred             hccccCCCccEEEeeCCcCCCC----CCccccc--cccCccEEEeecccccc
Q 047496          144 SSLANCKKLRSLNLIGNPLDGF----LPSSIGN--LSMSLETLLITNCSISG  189 (204)
Q Consensus       144 ~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~--~~~~L~~L~l~~n~~~~  189 (204)
                      ..+..+++|++|++++|.+++.    ++..+..  ++ +|++|++++|.+++
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~-~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC-CCCEEECCSSCCBH
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC-CeEEEECcCCcCCH
Confidence            3455555666666666655533    2233321  33 56666666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=4.8e-22  Score=152.19  Aligned_cols=200  Identities=21%  Similarity=0.270  Sum_probs=141.6

Q ss_pred             CcceEEccCCccccccC----hhccCCCCCcEEEccCcccc---ccCCcc-------ccCCCccceeeecCCccee----
Q 047496            1 MLKGIYLGYNKLHGEIP----HEIANLRNLEALALGMNNLV---GVVSAP-------IFNMSTLKIIILINNSLFG----   62 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~~~~~~~----   62 (204)
                      +|++|++++|.+....+    ..+..+++|++|++++|.+.   +..|..       +..+++|++|++++|.+.+    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            47889999998876543    34668899999999986443   333333       3578899999999998874    


Q ss_pred             ecCCccCCCCCCccEEEcCCCcCccCCCcc----ccCC---------CCCCEEeccCCcccc-ccc---ccccCCCCCcE
Q 047496           63 SLPSRIGLSLPTVEHLNLELNRFSGTIPSS----ITNA---------SKLTLLKLGGNTFSG-LIP---DTIGNLRNLEW  125 (204)
Q Consensus        63 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~l~l~~~~~~~-~~~---~~l~~l~~L~~  125 (204)
                      .++..+. .+++|++|++++|.++...+..    +..+         ++|++|++++|.+.. ..+   ..+..+++|+.
T Consensus       113 ~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          113 PLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence            2455554 6889999999999886333322    3333         889999999998863 333   35677889999


Q ss_pred             EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC----CCCCccccccccCccEEEeeccccccc----cchhhhh
Q 047496          126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD----GFLPSSIGNLSMSLETLLITNCSISGN----IPQAIST  197 (204)
Q Consensus       126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~  197 (204)
                      |++++|.+............+..+++|++|++++|.++    ..++..+..++ +|++|++++|.+++.    +|.++..
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchhhHHHHHHHHhh
Confidence            99999987632111011126778899999999999985    45677777777 899999999999876    4455432


Q ss_pred             --hhhhc
Q 047496          198 --KYLFQ  202 (204)
Q Consensus       198 --l~~l~  202 (204)
                        ++.|+
T Consensus       271 ~~~~~L~  277 (386)
T 2ca6_A          271 LENIGLQ  277 (386)
T ss_dssp             CSSCCCC
T ss_pred             ccCCCeE
Confidence              45443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.3e-19  Score=132.30  Aligned_cols=162  Identities=23%  Similarity=0.346  Sum_probs=136.2

Q ss_pred             ccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCC
Q 047496           20 IANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKL   99 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L   99 (204)
                      +..+++|+.|++++|.+... + .+..+++|+.|++++|.+. .+++ +. .+++|++|++++|.+. .. ..+..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~-~~-~~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVK-DL-SSLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CG-GGGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCC-CC-hhhccCCCC
Confidence            34678999999999998865 2 3778999999999999997 4554 44 8999999999999987 33 448899999


Q ss_pred             CEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccE
Q 047496          100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLET  179 (204)
Q Consensus       100 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~  179 (204)
                      ++|++++|.+.+.  ..+..+++|+.|++++|.+...       ..+..+++|++|++++|.+++..+  +..++ +|+.
T Consensus       115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~  182 (291)
T 1h6t_A          115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-KLQN  182 (291)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG--GTTCT-TCCE
T ss_pred             CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-------hhhccCCCCCEEEccCCccccchh--hcCCC-ccCE
Confidence            9999999999864  5688999999999999999877       357889999999999999986443  77887 9999


Q ss_pred             EEeeccccccccchhhhhhhhhc
Q 047496          180 LLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       180 L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |++++|.+++. | .+..++.|+
T Consensus       183 L~L~~N~i~~l-~-~l~~l~~L~  203 (291)
T 1h6t_A          183 LYLSKNHISDL-R-ALAGLKNLD  203 (291)
T ss_dssp             EECCSSCCCBC-G-GGTTCTTCS
T ss_pred             EECCCCcCCCC-h-hhccCCCCC
Confidence            99999999854 4 377777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1e-18  Score=139.25  Aligned_cols=167  Identities=21%  Similarity=0.322  Sum_probs=137.5

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +++.|++++|.+.+ +|..+.  ++|+.|++++|.++.. |   ..+++|++|++++|.++ .+|. +. .  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~-~ip~-l~-~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISL-P---ELPASLEYLDACDNRLS-TLPE-LP-A--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC-CC-T--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCC-Ccch-hh-c--CCCEEEC
Confidence            47899999999985 776553  8899999999999954 4   34789999999999998 4777 54 2  9999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.++ .+|.   .+++|++|++++|.+++ +|.   .+++|+.|++++|.+..+|.       +.  ++|++|++++|
T Consensus       128 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-------l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          128 DNNQLT-MLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-------LP--ESLEALDVSTN  190 (571)
T ss_dssp             CSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-------CC--TTCCEEECCSS
T ss_pred             CCCcCC-CCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-------hh--CCCCEEECcCC
Confidence            999998 4666   67899999999999986 454   57899999999999998763       33  89999999999


Q ss_pred             cCCCCCCccccccccCc-------cEEEeeccccccccchhhhhhhhhc
Q 047496          161 PLDGFLPSSIGNLSMSL-------ETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .++ .+|. +..   +|       +.|++++|.|+ .+|..+..++.|+
T Consensus       191 ~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~  233 (571)
T 3cvr_A          191 LLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC  233 (571)
T ss_dssp             CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred             CCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence            999 6666 543   56       99999999999 6788888887765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.81  E-value=7.5e-21  Score=144.40  Aligned_cols=187  Identities=22%  Similarity=0.208  Sum_probs=143.6

Q ss_pred             eEEccCCccccccChhccCCCCCcEEEccCccccccCC----ccccCCC-ccceeeecCCcceeecCCccCC---C-CCC
Q 047496            4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS----APIFNMS-TLKIIILINNSLFGSLPSRIGL---S-LPT   74 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~---~-~~~   74 (204)
                      .+.++++.+.+.+|..+....+|++|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..   . .++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46788999987777777777779999999999998776    6677888 8999999999987544443331   1 389


Q ss_pred             ccEEEcCCCcCccCCCccc----cCC-CCCCEEeccCCcccccccccc----cC-CCCCcEEEccCccCCCCcccchhhh
Q 047496           75 VEHLNLELNRFSGTIPSSI----TNA-SKLTLLKLGGNTFSGLIPDTI----GN-LRNLEWLGLAYNNLTSSTSKLSFLS  144 (204)
Q Consensus        75 L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~~~~  144 (204)
                      |++|++++|.++...+..+    ... ++|++|++++|.+++..+..+    .. ..+|+.|++++|.+.+.... .+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD-ELIQ  160 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH-HHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH-HHHH
Confidence            9999999999985555433    344 899999999999987655443    34 36999999999999765321 2334


Q ss_pred             ccccCC-CccEEEeeCCcCCCCCCcccccc----ccCccEEEeecccccccc
Q 047496          145 SLANCK-KLRSLNLIGNPLDGFLPSSIGNL----SMSLETLLITNCSISGNI  191 (204)
Q Consensus       145 ~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~~~~~~  191 (204)
                      .+...+ +|++|++++|.+++..+..+...    +++|++|++++|.+++..
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~  212 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS  212 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence            556665 99999999999987766655433    238999999999999743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=4.3e-19  Score=142.52  Aligned_cols=174  Identities=22%  Similarity=0.329  Sum_probs=142.2

Q ss_pred             EccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcC
Q 047496            6 YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRF   85 (204)
Q Consensus         6 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   85 (204)
                      .+..+.+....+  +..+++|+.|++++|.+....  .+..+++|+.|++++|.+. .+++ +. .+++|+.|++++|.+
T Consensus        27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKI   99 (605)
T ss_dssp             HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCC
T ss_pred             hccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCC
Confidence            344444443222  457889999999999988653  4788999999999999997 4554 44 899999999999999


Q ss_pred             ccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC
Q 047496           86 SGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF  165 (204)
Q Consensus        86 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  165 (204)
                      . .++ .+..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+..+       ..+..+++|+.|++++|.+.+.
T Consensus       100 ~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          100 K-DLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             C-CCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-------GGGGSCTTCSEEECCSSCCCCC
T ss_pred             C-CCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-------hhhcccCCCCEEECcCCcCCCc
Confidence            7 444 688999999999999999853  5588999999999999999876       3678899999999999999865


Q ss_pred             CCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          166 LPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       166 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .+  +..++ +|+.|++++|.+++.  ..+..++.|+
T Consensus       169 ~~--l~~l~-~L~~L~Ls~N~i~~l--~~l~~l~~L~  200 (605)
T 1m9s_A          169 VP--LAGLT-KLQNLYLSKNHISDL--RALAGLKNLD  200 (605)
T ss_dssp             GG--GTTCT-TCCEEECCSSCCCBC--GGGTTCTTCS
T ss_pred             hh--hccCC-CCCEEECcCCCCCCC--hHHccCCCCC
Confidence            55  77887 999999999999864  3577777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=6.8e-18  Score=135.87  Aligned_cols=50  Identities=30%  Similarity=0.231  Sum_probs=33.9

Q ss_pred             CCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhh
Q 047496          149 CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYL  200 (204)
Q Consensus       149 ~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~  200 (204)
                      +++|++|++++|.++ .+|..+..++ +|+.|++++|.+++..|..|..++.
T Consensus       260 ~~~L~~L~Ls~N~L~-~lp~~l~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          260 PSGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             CTTCCEEECCSSCCC-SCCGGGGGSC-TTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             cccCcEEeCCCCCCC-cCCHHHhhcc-ccCEEEecCCCCCCcCHHHHHhccc
Confidence            456667777777666 5666666666 7777777777777777776666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=5.4e-18  Score=136.46  Aligned_cols=169  Identities=23%  Similarity=0.213  Sum_probs=114.7

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC------------
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG------------   69 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------   69 (204)
                      |++|++++|.+.. +|.   .+++|+.|++++|.++....    .+++|++|++++|.+. .+|....            
T Consensus       103 L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          103 LLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQL  173 (622)
T ss_dssp             CCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCC
T ss_pred             CCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCC
Confidence            4555555555542 222   34556666666666654322    1255666666666554 2222110            


Q ss_pred             ----CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhc
Q 047496           70 ----LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSS  145 (204)
Q Consensus        70 ----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  145 (204)
                          ..+++|+.|++++|.+. .++.   ..++|+.|++++|.++. ++.   .+++|+.|++++|.+..++        
T Consensus       174 ~~l~~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp--------  237 (622)
T 3g06_A          174 TSLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP--------  237 (622)
T ss_dssp             SCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC--------
T ss_pred             CCCcccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC--------
Confidence                13477888888888877 4444   24688999999998873 343   3478999999999998775        


Q ss_pred             cccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          146 LANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       146 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                       ..+++|++|++++|.++ .+|.   ..+ +|+.|++++|.++ .+|..|..++.|+
T Consensus       238 -~~l~~L~~L~Ls~N~L~-~lp~---~~~-~L~~L~Ls~N~L~-~lp~~l~~l~~L~  287 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLT-SLPM---LPS-GLLSLSVYRNQLT-RLPESLIHLSSET  287 (622)
T ss_dssp             -CCCTTCCEEECCSSCCS-CCCC---CCT-TCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred             -CCCCcCcEEECCCCCCC-cCCc---ccc-cCcEEeCCCCCCC-cCCHHHhhccccC
Confidence             23578999999999998 5565   344 8999999999999 7799999988775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=2.1e-21  Score=151.63  Aligned_cols=129  Identities=18%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCccccccccccc-----CCCCCcEEEccCccCCCCcccchh
Q 047496           72 LPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLIPDTIG-----NLRNLEWLGLAYNNLTSSTSKLSF  142 (204)
Q Consensus        72 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~  142 (204)
                      +++|++|++++|.++..    ++..+..+++|++|++++|.+.+..+..+.     ..++|+.|++++|.++.... ..+
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~l  333 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC-SHF  333 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-HHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH-HHH
Confidence            44555555555554421    233334455555555555554432222221     12355555555555443211 112


Q ss_pred             hhccccCCCccEEEeeCCcCCCCCCccccc-----cccCccEEEeecccccc----ccchhhhhhhhhc
Q 047496          143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGN-----LSMSLETLLITNCSISG----NIPQAISTKYLFQ  202 (204)
Q Consensus       143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~l~~l~  202 (204)
                      +..+..+++|++|++++|.+++..+..+..     .+ +|++|++++|.+++    .+|..+..++.|+
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  401 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLAATLLANHSLR  401 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC-ceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence            334445566666666666655433333322     22 56666666666654    4455555554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=3.8e-18  Score=133.10  Aligned_cols=172  Identities=26%  Similarity=0.395  Sum_probs=80.1

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |++|++++|.+. .+| .++.+++|++|++++|.+++.. .   ..++|+.|++++|.+. .+|.    ..++|++|+++
T Consensus       217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~-~l~~----~~~~L~~L~ls  285 (454)
T 1jl5_A          217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVS  285 (454)
T ss_dssp             CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECC
T ss_pred             ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCccc-ccCc----ccCcCCEEECc
Confidence            455555555554 444 2556666666666666655422 1   1245555555555554 2332    12455555655


Q ss_pred             CCcCcc--CCCcc-------------ccCC-CCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhc
Q 047496           82 LNRFSG--TIPSS-------------ITNA-SKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSS  145 (204)
Q Consensus        82 ~~~~~~--~~~~~-------------~~~~-~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  145 (204)
                      +|.+..  ..+..             +..+ ++|++|++++|.+++ .|..   +++|+.|++++|.+..+|.       
T Consensus       286 ~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~-------  354 (454)
T 1jl5_A          286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE-------  354 (454)
T ss_dssp             SSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC-------
T ss_pred             CCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc-------
Confidence            555542  11111             1111 355555665555553 2322   4667777777776665541       


Q ss_pred             cccCCCccEEEeeCCcCCC--CCCcccccc-------------ccCccEEEeecccccc--ccchhhhhh
Q 047496          146 LANCKKLRSLNLIGNPLDG--FLPSSIGNL-------------SMSLETLLITNCSISG--NIPQAISTK  198 (204)
Q Consensus       146 ~~~~~~L~~l~l~~n~~~~--~~~~~~~~~-------------~~~L~~L~l~~n~~~~--~~~~~~~~l  198 (204)
                        .+++|++|++++|.+++  .+|.++..+             + +|+.|++++|.+++  .+|.++..+
T Consensus       355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ-NLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred             --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC-cCCEEECCCCcCCccccchhhHhhe
Confidence              25678888888888876  667776665             4 78888888888876  677776655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=3.2e-18  Score=124.48  Aligned_cols=146  Identities=21%  Similarity=0.292  Sum_probs=125.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+. .++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|.+. .++.. . . ++|++|++
T Consensus        42 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~-~-~-~~L~~L~L  113 (263)
T 1xeu_A           42 GVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI-P-S-ACLSRLFL  113 (263)
T ss_dssp             TCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTC-C-C-SSCCEEEC
T ss_pred             cCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcc-c-c-CcccEEEc
Confidence            4789999999987 455 68899999999999999997655  889999999999999997 55543 2 3 89999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ++|.+. .. ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|.+...       ..+..+++|+.|++++|
T Consensus       114 ~~N~l~-~~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-------~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          114 DNNELR-DT-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-------GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CSSCCS-BS-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-------TTSTTCCCCCEEEEEEE
T ss_pred             cCCccC-CC-hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-------HHhccCCCCCEEeCCCC
Confidence            999998 44 4588999999999999999865  3688999999999999999877       35788999999999999


Q ss_pred             cCCCC
Q 047496          161 PLDGF  165 (204)
Q Consensus       161 ~~~~~  165 (204)
                      .++..
T Consensus       183 ~~~~~  187 (263)
T 1xeu_A          183 KCVNE  187 (263)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            98754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.6e-18  Score=130.96  Aligned_cols=190  Identities=15%  Similarity=0.119  Sum_probs=147.9

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE-EcC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL-NLE   81 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L-~l~   81 (204)
                      ++++.++++++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+.+.++...+..++++.++ .+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34566666776 6776653  6899999999999988888899999999999999998767888877788887764 566


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccC-ccCCCCcccchhhhccccCC-CccEEEeeC
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY-NNLTSSTSKLSFLSSLANCK-KLRSLNLIG  159 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~  159 (204)
                      .|.+....+..+..+++|+++++++|.+....+..+....++..+++.+ +.+..++.     ..+..+. .++.|++++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-----~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-----NSFVGLSFESVILWLNK  163 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-----TSSTTSBSSCEEEECCS
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-----cchhhcchhhhhhcccc
Confidence            6888856677889999999999999999866555666677788888866 45655543     3455554 689999999


Q ss_pred             CcCCCCCCccccccccCccEEEeec-cccccccchhhhhhhhhc
Q 047496          160 NPLDGFLPSSIGNLSMSLETLLITN-CSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~l~  202 (204)
                      |.++ .++..++... +++.+++.+ |.++...+++|..++.|+
T Consensus       164 N~i~-~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          164 NGIQ-EIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             SCCC-EECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             cccc-CCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccc
Confidence            9998 5565655666 799999985 577755557788887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.77  E-value=8.8e-21  Score=151.38  Aligned_cols=188  Identities=20%  Similarity=0.160  Sum_probs=144.3

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCcc-------------ccccCCccccCCCccceee-ecCCcceeecCC-
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNN-------------LVGVVSAPIFNMSTLKIII-LINNSLFGSLPS-   66 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~~~-   66 (204)
                      |+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.+.+. .++. 
T Consensus       351 L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l  428 (567)
T 1dce_A          351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRSK  428 (567)
T ss_dssp             SSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHH
T ss_pred             ceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhhh
Confidence            567888888876 778888888888888886654             3344455566677777777 4444321 1110 


Q ss_pred             -----ccC-CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccc
Q 047496           67 -----RIG-LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKL  140 (204)
Q Consensus        67 -----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  140 (204)
                           .+. -....|+.|++++|.++ .+|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.++.+|   
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp---  502 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD---  502 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred             hhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc---
Confidence                 000 01135899999999998 5676 999999999999999999 67889999999999999999998864   


Q ss_pred             hhhhccccCCCccEEEeeCCcCCCCC-CccccccccCccEEEeeccccccccch---hhhhhhhhc
Q 047496          141 SFLSSLANCKKLRSLNLIGNPLDGFL-PSSIGNLSMSLETLLITNCSISGNIPQ---AISTKYLFQ  202 (204)
Q Consensus       141 ~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~  202 (204)
                          .+..+++|++|++++|.+++.. |..+..++ +|+.|++++|.+++..|.   .+..++.|+
T Consensus       503 ----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          503 ----GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             ----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             ----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence                5788999999999999999766 89999998 999999999999976542   233455554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=9.7e-21  Score=147.91  Aligned_cols=36  Identities=28%  Similarity=0.394  Sum_probs=15.9

Q ss_pred             CCcEEEccCcccccc----CCccccCCCccceeeecCCcc
Q 047496           25 NLEALALGMNNLVGV----VSAPIFNMSTLKIIILINNSL   60 (204)
Q Consensus        25 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~   60 (204)
                      +|++|++++|.++..    .+..+..+++|++|++++|.+
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            345555555444421    233344444444444444444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=8.1e-20  Score=149.79  Aligned_cols=146  Identities=20%  Similarity=0.277  Sum_probs=83.1

Q ss_pred             CccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCC
Q 047496           41 SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL  120 (204)
Q Consensus        41 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l  120 (204)
                      +..+..+..|+.|++++|.+. .+|..++ .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            444556666666666666665 5666665 5666666666666666 56666666666666666666666 446666666


Q ss_pred             CCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhh
Q 047496          121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       121 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      ++|+.|++++|.+..+|      ..+..+++|++|++++|.+++.+|..+.........+++++|.+++.+|..+.
T Consensus       293 ~~L~~L~L~~N~l~~lp------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLP------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             TTCSEEECCSSCCCCCC------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             CCCCEEECCCCCCCccC------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            66666666666666554      34566666666666666666555555433221222344444444444444433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=3.1e-17  Score=127.93  Aligned_cols=79  Identities=22%  Similarity=0.332  Sum_probs=37.2

Q ss_pred             ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEc
Q 047496           49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL  128 (204)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l  128 (204)
                      +|++|++++|.+. .+| .+. .+++|++|++++|.+. .+|..+   .+|++|++++|.+++ .| .++.+++|+.|++
T Consensus       132 ~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          132 LLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            4555555555554 244 222 4555555555555544 233221   245555555555443 23 3445555555555


Q ss_pred             cCccCCCC
Q 047496          129 AYNNLTSS  136 (204)
Q Consensus       129 ~~~~~~~~  136 (204)
                      ++|.+..+
T Consensus       203 ~~N~l~~l  210 (454)
T 1jl5_A          203 DNNSLKKL  210 (454)
T ss_dssp             CSSCCSSC
T ss_pred             CCCcCCcC
Confidence            55544443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.76  E-value=2.3e-18  Score=116.98  Aligned_cols=135  Identities=23%  Similarity=0.257  Sum_probs=64.8

Q ss_pred             CCCcEEEccCcccc-ccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEE
Q 047496           24 RNLEALALGMNNLV-GVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLL  102 (204)
Q Consensus        24 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  102 (204)
                      +++++|++++|.++ +..|..+..+++|++|++++|.+. .+ ..+. .+++|++|++++|.+....+..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLP-KLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCC-CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhc-cCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            55666666666665 334444555566666666666554 22 2222 45555555555555543334433445555555


Q ss_pred             eccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          103 KLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       103 ~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      ++++|.+++.. +..+..+++|+.|++++|.+...+..  ....+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~--~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY--RESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH--HHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH--HHHHHHhCccCcEecCCCCChh
Confidence            55555544321 13444445555555555544444310  0013344444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=3.3e-18  Score=116.20  Aligned_cols=134  Identities=25%  Similarity=0.297  Sum_probs=115.1

Q ss_pred             CcceEEccCCccc-cccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            1 MLKGIYLGYNKLH-GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         1 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      ++++|++++|.+. +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+. .+++|++|+
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCCEEE
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCCEEe
Confidence            4789999999997 67888889999999999999999876  6688899999999999999854554433 699999999


Q ss_pred             cCCCcCccCCC--ccccCCCCCCEEeccCCccccccc---ccccCCCCCcEEEccCccCCCCcc
Q 047496           80 LELNRFSGTIP--SSITNASKLTLLKLGGNTFSGLIP---DTIGNLRNLEWLGLAYNNLTSSTS  138 (204)
Q Consensus        80 l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~  138 (204)
                      +++|.+. ..+  ..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+...+.
T Consensus       102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            9999998 443  678899999999999999986644   478899999999999998877763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=1.6e-17  Score=115.32  Aligned_cols=130  Identities=25%  Similarity=0.306  Sum_probs=80.8

Q ss_pred             cEEEccCccccccCCccccCCCccceeeecCCcceeecCC-ccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           27 EALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPS-RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      +.++++++.++.. |..+.  .++++|++++|.+. .++. ..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus        11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            5677777766543 33222  26677777777665 3333 333366777777777777665556666667777777777


Q ss_pred             CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC
Q 047496          106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF  165 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  165 (204)
                      +|.+++..+..+..+++|+.|++++|.+...++     ..+..+++|+++++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-----TSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-----HHhhcCCCCCEEEeCCCCccCc
Confidence            777766555566666777777777776665532     3556666677777777766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=9.2e-18  Score=125.85  Aligned_cols=193  Identities=15%  Similarity=0.088  Sum_probs=151.5

Q ss_pred             CcceEEccCCccc--------------------cccChhccC--------CCCCcEEEccCccccccCCccccCCCccce
Q 047496            1 MLKGIYLGYNKLH--------------------GEIPHEIAN--------LRNLEALALGMNNLVGVVSAPIFNMSTLKI   52 (204)
Q Consensus         1 ~L~~L~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   52 (204)
                      +|++|+|++|++.                    ......|..        +++|+.+++.+ .++.+...+|.++++|+.
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~  128 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI  128 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred             cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence            4788999998876                    112335667        89999999998 888888888999999999


Q ss_pred             eeecCCcceeecCCccCCCCCCccEEEcCCCcC----ccCCCccc-----------------------------------
Q 047496           53 IILINNSLFGSLPSRIGLSLPTVEHLNLELNRF----SGTIPSSI-----------------------------------   93 (204)
Q Consensus        53 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~~-----------------------------------   93 (204)
                      +++.++.+. .+++..+..+.++..+.......    .......+                                   
T Consensus       129 l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          129 CQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             EEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            999999887 77777776777777776655221    00000000                                   


Q ss_pred             ---------------cCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc-EEEe
Q 047496           94 ---------------TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR-SLNL  157 (204)
Q Consensus        94 ---------------~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~-~l~l  157 (204)
                                     ..+++|+++++.+|.++.....+|..+.+|+.++++.| +..++.     .+|.++++|+ .+++
T Consensus       208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLEL  281 (329)
T ss_dssp             EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEE
T ss_pred             EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEE
Confidence                           02689999999999898777778999999999999997 766654     6899999999 9999


Q ss_pred             eCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhcc
Q 047496          158 IGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQN  203 (204)
Q Consensus       158 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~  203 (204)
                      .. .++...+.+|.... +|+.++++.|.++...+.+|.+++.|+.
T Consensus       282 ~~-~l~~I~~~aF~~c~-~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          282 PA-SVTAIEFGAFMGCD-NLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             CT-TCCEECTTTTTTCT-TEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             cc-cceEEchhhhhCCc-cCCEEEeCCCccCccchhhhcCCcchhh
Confidence            98 67656667888888 9999999999999898999999988863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=9.3e-17  Score=111.45  Aligned_cols=127  Identities=21%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             cEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccC
Q 047496           27 EALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGG  106 (204)
Q Consensus        27 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  106 (204)
                      +.++++++.++... ..+  .+++++|++++|.+. .+|..+. .+++|+.|++++|.++...+..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KGI--PRDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCC-SCC--CTTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCC-CCC--CCCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45666666665332 222  135666666666665 5554433 566666666666666644444566666666666666


Q ss_pred             CcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          107 NTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       107 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      |.++...+..+..+++|+.|++++|.+..++.     ..+..+++|+.+++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-----GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-----TTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-----hhhhcCccccEEEeCCCCee
Confidence            66665555556666666666666666655543     24555566666666666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=9e-17  Score=111.47  Aligned_cols=130  Identities=24%  Similarity=0.272  Sum_probs=112.6

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCc-cccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSA-PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++++++++++. .+|..+.  .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECC
Confidence            57899999886 6776554  3899999999999987664 588999999999999999854455554 89999999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                      +|.+....+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999966677789999999999999999988889999999999999999998754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=8.8e-18  Score=111.86  Aligned_cols=132  Identities=23%  Similarity=0.256  Sum_probs=105.3

Q ss_pred             CCCCcEEEccCcccc-ccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCE
Q 047496           23 LRNLEALALGMNNLV-GVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL  101 (204)
Q Consensus        23 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  101 (204)
                      .++++.|++++|.++ +..+..+..+++|++|++++|.+. .+ ..+. .+++|++|++++|.+....+..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLP-KLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCC-CCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhh-cCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            467899999999988 566777788999999999999887 34 4444 7899999999999998556776777899999


Q ss_pred             EeccCCccccc-ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeC
Q 047496          102 LKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG  159 (204)
Q Consensus       102 l~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  159 (204)
                      |++++|.+++. .+..+..+++|+.|++++|.+...+..  ....+..+++|++||+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY--RENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH--HHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH--HHHHHHHCCCcccccCCC
Confidence            99999998864 347788999999999999998877530  013577889999998763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1.7e-17  Score=110.52  Aligned_cols=129  Identities=22%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             CCccceeeecCCcce-eecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496           47 MSTLKIIILINNSLF-GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW  125 (204)
Q Consensus        47 l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  125 (204)
                      .++++.|++++|.+. +.+|..+. .+++|++|++++|.+...  ..+..+++|++|++++|.+++..|..+..+++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            457788888888776 45665444 678888888888877633  56777778888888888777656666667777888


Q ss_pred             EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCC---ccccccccCccEEEee
Q 047496          126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLP---SSIGNLSMSLETLLIT  183 (204)
Q Consensus       126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~~L~~L~l~  183 (204)
                      |++++|.+...+    .+..+..+++|++|++++|.+++..+   ..+..++ +|+.|+++
T Consensus        93 L~ls~N~i~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLS----TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHH----HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred             EECCCCcCCChH----HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence            888888776643    12456777778888888887775443   3556666 77777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=2.6e-16  Score=107.72  Aligned_cols=130  Identities=25%  Similarity=0.267  Sum_probs=70.0

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      .+.+++++++++..... +  .++|+.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~-~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG-I--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTT-C--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCC-C--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            35566666665543221 1  245666666666655 4444443355666666666666653333334555666666666


Q ss_pred             CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496          106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG  164 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  164 (204)
                      +|.+++..+..+..+++|+.|++++|.+..++.     ..+..+++|+++++++|.+.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-----GIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----TTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCH-----HHhcCCcccCEEEecCCCeec
Confidence            666554444445555666666666665555542     234455556666666665553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=3.9e-17  Score=133.97  Aligned_cols=162  Identities=25%  Similarity=0.290  Sum_probs=108.9

Q ss_pred             CCCcEEEccCccccccCCccccCCCccce-----eeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496           24 RNLEALALGMNNLVGVVSAPIFNMSTLKI-----IILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK   98 (204)
Q Consensus        24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~-----L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   98 (204)
                      +.++.+++.++.+...... +.....|+.     +++..+.+.  +++..+..++.|+.|++++|.+. .++..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            5678888888887754222 222222222     333333332  34444448999999999999998 88888889999


Q ss_pred             CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCcc
Q 047496           99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLE  178 (204)
Q Consensus        99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~  178 (204)
                      |++|++++|.++ .+|..++.+++|+.|++++|.+..+|      ..+..+++|++|++++|.++ .+|..|..++ +|+
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp------~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~  319 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLP------AELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQ  319 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCC------SSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCC
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccC------hhhcCCCCCCEEECCCCCCC-ccChhhhcCC-Ccc
Confidence            999999999999 77888999999999999999999776      56888999999999999998 7888899998 999


Q ss_pred             EEEeeccccccccchhhhhh
Q 047496          179 TLLITNCSISGNIPQAISTK  198 (204)
Q Consensus       179 ~L~l~~n~~~~~~~~~~~~l  198 (204)
                      +|++++|.+++.+|..+..+
T Consensus       320 ~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          320 FLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             CEECTTSCCCSHHHHHHHHH
T ss_pred             EEeCCCCccCCCChHHHhhc
Confidence            99999999999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=5.2e-16  Score=106.19  Aligned_cols=131  Identities=21%  Similarity=0.219  Sum_probs=111.0

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      +.++++++++. .+|..+.  ++++.|++++|.+++..+..+..+++|++|++++|.+. .+++..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence            56888888877 5554443  78999999999999887777889999999999999997 67776655899999999999


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCc
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSST  137 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  137 (204)
                      |.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            9998555556789999999999999999766666788999999999999987654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.1e-15  Score=105.99  Aligned_cols=129  Identities=25%  Similarity=0.301  Sum_probs=110.3

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      ++++++++++. .+|..+.  ++++.|++++|.++. .|..|..+++|++|++++|.++ .+++..+..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence            46888888887 6676553  689999999999984 4577899999999999999998 66666555899999999999


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                      |.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.-.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            999966667899999999999999999976666799999999999999987543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=2.4e-16  Score=107.83  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             CccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCcc
Q 047496           74 TVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLR  153 (204)
Q Consensus        74 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~  153 (204)
                      +|+.|++++|.+.. + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++.    ...+..+++|+
T Consensus        43 ~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~l~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD----LDPLASLKSLT  116 (176)
T ss_dssp             CCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG----GGGGGGCTTCC
T ss_pred             CCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh----hHhhhcCCCCC
Confidence            44444444444432 1 334444445555555554443322333455555555555555544331    02344455555


Q ss_pred             EEEeeCCcCCCCCCcc----ccccccCccEEEeeccccc
Q 047496          154 SLNLIGNPLDGFLPSS----IGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       154 ~l~l~~n~~~~~~~~~----~~~~~~~L~~L~l~~n~~~  188 (204)
                      ++++++|.++ .++..    +..++ +|+.|++++|...
T Consensus       117 ~L~l~~N~i~-~~~~~~~~~~~~l~-~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVT-NKKHYRLYVIYKVP-QVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGG-GSTTHHHHHHHHCT-TCSEETTEECCHH
T ss_pred             EEEecCCCCC-CcHhHHHHHHHHCC-ccceeCCCcCCHH
Confidence            5555555554 23332    44444 5555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.64  E-value=5.5e-16  Score=106.00  Aligned_cols=136  Identities=19%  Similarity=0.203  Sum_probs=108.1

Q ss_pred             hccCCCCCcEEEccCccccccCCccccCC-CccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCcc-ccCC
Q 047496           19 EIANLRNLEALALGMNNLVGVVSAPIFNM-STLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSS-ITNA   96 (204)
Q Consensus        19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~   96 (204)
                      .+..+.+|+.|++++|.++.. +. +..+ ++|+.|++++|.+.+ + +.+. .+++|++|++++|.+. .++.. +..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~-~l~~L~~L~Ls~N~l~-~~~~~~~~~l   87 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRK-L-DGFP-LLRRLKTLLVNNNRIC-RIGEGLDQAL   87 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCE-E-CCCC-CCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCc-c-cccc-cCCCCCEEECCCCccc-ccCcchhhcC
Confidence            456788999999999999855 44 4444 499999999999974 4 4444 7899999999999998 44444 4889


Q ss_pred             CCCCEEeccCCcccccccc--cccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           97 SKLTLLKLGGNTFSGLIPD--TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        97 ~~L~~l~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      ++|++|++++|.+.. .+.  .+..+++|+.|++++|.+...+..  ....+..+++|+.+|+++|...
T Consensus        88 ~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~--~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHY--RLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTH--HHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhH--HHHHHHHCCccceeCCCcCCHH
Confidence            999999999999974 454  788999999999999999877531  0124778999999999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.60  E-value=6.4e-18  Score=128.50  Aligned_cols=171  Identities=17%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             CCCcEEEccCccccccCCcccc-----CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc-----
Q 047496           24 RNLEALALGMNNLVGVVSAPIF-----NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI-----   93 (204)
Q Consensus        24 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----   93 (204)
                      +.++.|++++|.++......+.     ..++|++|++++|.+.+.....+...+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3455555555554432222211     113555555555554322222222223445555555555442221211     


Q ss_pred             cCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc
Q 047496           94 TNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS  169 (204)
Q Consensus        94 ~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~  169 (204)
                      ...++|++|++++|.++..    ++..+...++|+.|++++|.+.+... ..+...+..+++|++|++++|.+++.....
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-ELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-HHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-HHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence            1234455555555554322    12223445555555555555443211 112233444455555555555554322212


Q ss_pred             ----ccccccCccEEEeeccccccccchhhh
Q 047496          170 ----IGNLSMSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       170 ----~~~~~~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                          +...+ +|++|++++|.|++.....++
T Consensus       231 l~~~L~~~~-~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          231 LARAAREHP-SLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             HHHHHHHCS-SCCEEECTTSSCCHHHHHHHH
T ss_pred             HHHHHHhCC-CCCEEeccCCCCCHHHHHHHH
Confidence                22223 455555555555544444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=2.3e-18  Score=120.04  Aligned_cols=156  Identities=22%  Similarity=0.267  Sum_probs=99.6

Q ss_pred             ccCCCCCcEEEccCccccccCCc------cccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccc
Q 047496           20 IANLRNLEALALGMNNLVGVVSA------PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSI   93 (204)
Q Consensus        20 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~   93 (204)
                      +.....++.++++.+.+.+..+.      .+..+++|++|++++|.+. .+| .+. .+++|+.|++++|.+. .++..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchh
Confidence            34445555566666655554443      5666777777777777765 355 343 5677777777777776 556555


Q ss_pred             cCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCc-----
Q 047496           94 TNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS-----  168 (204)
Q Consensus        94 ~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-----  168 (204)
                      ..+++|++|++++|.+++ .+ .+..+++|+.|++++|.+...+.    ...+..+++|+++++++|.+.+..|.     
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~----~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  163 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGE----IDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHH----HHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred             hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhH----HHHHhcCCCCCEEEecCCccccccccccchH
Confidence            666777777777777764 33 46677777788887777766541    13566777788888888877654333     


Q ss_pred             -----cccccccCccEEEeeccccc
Q 047496          169 -----SIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       169 -----~~~~~~~~L~~L~l~~n~~~  188 (204)
                           .+..++ +|+.||  ++.++
T Consensus       164 ~~~~~~~~~l~-~L~~Ld--~~~i~  185 (198)
T 1ds9_A          164 EYRIEVVKRLP-NLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHHCS-SCSEEC--CGGGT
T ss_pred             HHHHHHHHhCC-CcEEEC--CcccC
Confidence                 145555 777765  55555

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.56  E-value=1.9e-17  Score=125.91  Aligned_cols=189  Identities=16%  Similarity=0.117  Sum_probs=132.7

Q ss_pred             CcceEEccCCccccccChhccC-----CCCCcEEEccCccccccCCcccc-CCCccceeeecCCcceeecCCcc----CC
Q 047496            1 MLKGIYLGYNKLHGEIPHEIAN-----LRNLEALALGMNNLVGVVSAPIF-NMSTLKIIILINNSLFGSLPSRI----GL   70 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~----~~   70 (204)
                      +|+.|++++|.+.......+..     .++|+.|++++|.+.......+. .+++|+.|++++|.+.+.....+    ..
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            4789999999988544444332     37999999999998765433333 46789999999999864322222    12


Q ss_pred             CCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccchh
Q 047496           71 SLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLSF  142 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  142 (204)
                      ..+.|++|++++|.++..    ++..+...++|++|++++|.+.+..    ...+...++|+.|++++|.+++... ..+
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-~~l  231 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-LAL  231 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-HHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-HHH
Confidence            468899999999998742    3344567889999999999987543    4567778899999999999876532 124


Q ss_pred             hhccccCCCccEEEeeCCcCCCCCCccccccc----cCccEEE--eeccccccc
Q 047496          143 LSSLANCKKLRSLNLIGNPLDGFLPSSIGNLS----MSLETLL--ITNCSISGN  190 (204)
Q Consensus       143 ~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~----~~L~~L~--l~~n~~~~~  190 (204)
                      ..++..+++|++|++++|.+++.....+..+.    ..++.+.  +..+.+...
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            45677789999999999999866555554432    1266666  666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=1.1e-17  Score=116.62  Aligned_cols=147  Identities=21%  Similarity=0.317  Sum_probs=117.2

Q ss_pred             ccCCCccceeeecCCcceeecCC------ccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccc
Q 047496           44 IFNMSTLKIIILINNSLFGSLPS------RIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTI  117 (204)
Q Consensus        44 ~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l  117 (204)
                      +.....++.++++.+.+.+..|.      .+. .+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            34455667777777776665554      555 7899999999999998 466 7889999999999999998 567777


Q ss_pred             cCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCC-ccccccccCccEEEeeccccccccch---
Q 047496          118 GNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLP-SSIGNLSMSLETLLITNCSISGNIPQ---  193 (204)
Q Consensus       118 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~---  193 (204)
                      ..+++|+.|++++|.+..++       .+..+++|++|++++|.+++... ..+..++ +|++|++++|.+++..|.   
T Consensus        90 ~~~~~L~~L~L~~N~l~~l~-------~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~  161 (198)
T 1ds9_A           90 AVADTLEELWISYNQIASLS-------GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYNDYKENNA  161 (198)
T ss_dssp             HHHHHCSEEEEEEEECCCHH-------HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHHHHHHTTTT
T ss_pred             hcCCcCCEEECcCCcCCcCC-------ccccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccccccccccc
Confidence            77899999999999998753       47778999999999999984322 4677777 999999999999877654   


Q ss_pred             -------hhhhhhhhc
Q 047496          194 -------AISTKYLFQ  202 (204)
Q Consensus       194 -------~~~~l~~l~  202 (204)
                             .+..++.|+
T Consensus       162 ~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          162 TSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             HHHHHHHHHHHCSSCS
T ss_pred             hHHHHHHHHHhCCCcE
Confidence                   366666665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=5.9e-14  Score=95.33  Aligned_cols=108  Identities=28%  Similarity=0.304  Sum_probs=81.0

Q ss_pred             ccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEc
Q 047496           49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL  128 (204)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l  128 (204)
                      ..+.++++++.+. .+|..+.   +.+++|++.+|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4567888888876 6776553   67888888888887555667778888888888888887666666778888888888


Q ss_pred             cCccCCCCcccchhhhccccCCCccEEEeeCCcCCCC
Q 047496          129 AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF  165 (204)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  165 (204)
                      ++|.+..++.     ..+..+++|++|++++|.+...
T Consensus        86 ~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           86 NDNQLKSIPR-----GAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CSSCCCCCCT-----TTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCccCEeCH-----HHhcCCCCCCEEEeCCCCCCCC
Confidence            8888877753     3567778888888888877643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=8.3e-14  Score=94.95  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=84.3

Q ss_pred             cceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEcc
Q 047496           50 LKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA  129 (204)
Q Consensus        50 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~  129 (204)
                      -+.++++++.+. .+|..+.   +.|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            367888888885 7777653   778889999988885557778888889999998888886655567888888899998


Q ss_pred             CccCCCCcccchhhhccccCCCccEEEeeCCcCCC
Q 047496          130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDG  164 (204)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  164 (204)
                      +|.+..++.     ..+..+++|++|++++|.+..
T Consensus        90 ~N~l~~l~~-----~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPR-----GAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCT-----TTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCH-----HHhccccCCCEEEeCCCCccc
Confidence            888887764     357778888888888888873

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=2.1e-14  Score=107.58  Aligned_cols=172  Identities=16%  Similarity=0.171  Sum_probs=133.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcc------------------e-
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL------------------F-   61 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------------~-   61 (204)
                      +|+.++|.+ .+......+|..+++|+.+++.+|.+....+.+|..+.++..+.......                  . 
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            467888888 77756667799999999999999998878788888877777666544211                  0 


Q ss_pred             -------eecCCc---------------------------cCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCC
Q 047496           62 -------GSLPSR---------------------------IGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGN  107 (204)
Q Consensus        62 -------~~~~~~---------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  107 (204)
                             +.++..                           +...+++|+.+++.+|.+.......|..+.+|+++++.++
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                   000000                           0002689999999999888566678999999999999987


Q ss_pred             cccccccccccCCCCCc-EEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEE
Q 047496          108 TFSGLIPDTIGNLRNLE-WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL  181 (204)
Q Consensus       108 ~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~  181 (204)
                       +....+.+|..+.+|+ .++++. .+..++.     .+|.+|++|+++++.+|.+......+|...+ +|+.++
T Consensus       261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-----~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-~L~~ly  327 (329)
T 3sb4_A          261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-----GAFMGCDNLRYVLATGDKITTLGDELFGNGV-PSKLIY  327 (329)
T ss_dssp             -CCEECTTTTTTCTTCCEEEEECT-TCCEECT-----TTTTTCTTEEEEEECSSCCCEECTTTTCTTC-CCCEEE
T ss_pred             -cceehHHHhhCChhccEEEEEcc-cceEEch-----hhhhCCccCCEEEeCCCccCccchhhhcCCc-chhhhc
Confidence             7767778899999999 999998 6766654     6899999999999999999866677888877 899876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=3.5e-14  Score=113.47  Aligned_cols=160  Identities=24%  Similarity=0.320  Sum_probs=121.3

Q ss_pred             cccccChhccCCCCCcEEE-ccCccccccCCc-----ccc--CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC
Q 047496           12 LHGEIPHEIANLRNLEALA-LGMNNLVGVVSA-----PIF--NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN   83 (204)
Q Consensus        12 ~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~-----~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~   83 (204)
                      ..+..|..++.+++|+.|+ ++.+.+......     .+.  ....|+.|++++|.++ .+|. +. .+++|+.|++++|
T Consensus       397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N  473 (567)
T 1dce_A          397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHN  473 (567)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSS
T ss_pred             cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-cc-ccccCcEeecCcc
Confidence            3445666777888888888 555543221100     011  1125889999999997 5776 55 8999999999999


Q ss_pred             cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496           84 RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus        84 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      .++ .+|..+..+++|++|++++|.+++ +| .++.+++|+.|++++|.+...+    .+..+..+++|+.|++++|.++
T Consensus       474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~----~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA----AIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS----TTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC----CcHHHhcCCCCCEEEecCCcCC
Confidence            998 889999999999999999999996 56 7999999999999999998873    0167889999999999999998


Q ss_pred             CCCCcc---ccccccCccEEEe
Q 047496          164 GFLPSS---IGNLSMSLETLLI  182 (204)
Q Consensus       164 ~~~~~~---~~~~~~~L~~L~l  182 (204)
                      +..+..   +..++ +|+.|++
T Consensus       547 ~~~~~~~~l~~~lp-~L~~L~l  567 (567)
T 1dce_A          547 QEEGIQERLAEMLP-SVSSILT  567 (567)
T ss_dssp             GSSSCTTHHHHHCT-TCSEEEC
T ss_pred             CCccHHHHHHHHCc-ccCccCC
Confidence            654422   22355 8888864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.54  E-value=1.9e-15  Score=121.44  Aligned_cols=126  Identities=15%  Similarity=0.119  Sum_probs=68.1

Q ss_pred             CcceEEccCCccccc----cChhccCCCCCcEEEccCcccccc----CCccccCCCccceeeecCCcceeecCCccCCCC
Q 047496            1 MLKGIYLGYNKLHGE----IPHEIANLRNLEALALGMNNLVGV----VSAPIFNMSTLKIIILINNSLFGSLPSRIGLSL   72 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   72 (204)
                      +|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.    .+..+..+++|+.|++++|.+. .++..+. .+
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~-~~  242 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK-AA  242 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH-HC
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh-hh
Confidence            477888888877644    223344677788888887777632    2233445677777777777654 2332222 33


Q ss_pred             CCccEEE---------------------------cCCCcCccCCCccccCCCCCCEEeccCCccccccc-ccccCCCCCc
Q 047496           73 PTVEHLN---------------------------LELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIP-DTIGNLRNLE  124 (204)
Q Consensus        73 ~~L~~L~---------------------------l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~l~~L~  124 (204)
                      ++|++|+                           +.++... .++..+..+++|++|++++|.+++... ..+..+++|+
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            3444444                           3332221 333444455666666666666443222 2244555555


Q ss_pred             EEEcc
Q 047496          125 WLGLA  129 (204)
Q Consensus       125 ~L~l~  129 (204)
                      .|+++
T Consensus       322 ~L~L~  326 (592)
T 3ogk_B          322 VLETR  326 (592)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            55555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=8.8e-14  Score=94.47  Aligned_cols=107  Identities=20%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      .+.++++++.++.. |..+  .+++++|++++|.+. .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            45666666666543 2222  256666666666665 3433333356666666666666663333445666667777777


Q ss_pred             CCcccccccccccCCCCCcEEEccCccCCCC
Q 047496          106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                      +|.+++..+..+..+++|+.|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            7766655455566677777777777766544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=1.5e-13  Score=93.61  Aligned_cols=109  Identities=19%  Similarity=0.198  Sum_probs=73.6

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      -+.++++++.++.. |..+.  ++|++|++++|.+. .+++..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus        14 ~~~l~~~~n~l~~i-P~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASV-PAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCcc-CCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            36777777777643 33232  67777888877776 4444333477778888888887773333345677788888888


Q ss_pred             CCcccccccccccCCCCCcEEEccCccCCCCcc
Q 047496          106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTS  138 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  138 (204)
                      +|.+....+..+..+++|+.|++++|.+...+.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            887775555557778888888888887766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.52  E-value=2.1e-15  Score=121.13  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=88.4

Q ss_pred             CcceEEccCCc-ccc-ccChhccCCCCCcEEEccCccccccCC----ccccCCCccceeeecCCcce----eecCCccCC
Q 047496            1 MLKGIYLGYNK-LHG-EIPHEIANLRNLEALALGMNNLVGVVS----APIFNMSTLKIIILINNSLF----GSLPSRIGL   70 (204)
Q Consensus         1 ~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~   70 (204)
                      +|++|++++|. +.. .++..+..+++|++|++++|.+++...    ..+..+++|+.|+++++.+.    +.++..+ .
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~  217 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-R  217 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-H
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-h
Confidence            38999999986 332 233334588999999999999876532    33456899999999999875    1222222 3


Q ss_pred             CCCCccEEEcCCCcCccCCCccccCCCCCCEEecc---------------------------CCcccccccccccCCCCC
Q 047496           71 SLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG---------------------------GNTFSGLIPDTIGNLRNL  123 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~---------------------------~~~~~~~~~~~l~~l~~L  123 (204)
                      .+++|+.|++.+|.+. ..+..+..+++|++++++                           ++.. ...+..+..+++|
T Consensus       218 ~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L  295 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI  295 (592)
T ss_dssp             HCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred             hCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence            6899999999998875 344445555555555554                           3211 2344556667788


Q ss_pred             cEEEccCccCC
Q 047496          124 EWLGLAYNNLT  134 (204)
Q Consensus       124 ~~L~l~~~~~~  134 (204)
                      +.|++++|.+.
T Consensus       296 ~~L~Ls~~~l~  306 (592)
T 3ogk_B          296 RKLDLLYALLE  306 (592)
T ss_dssp             CEEEETTCCCC
T ss_pred             cEEecCCCcCC
Confidence            88888887743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=1.3e-12  Score=100.25  Aligned_cols=170  Identities=12%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             ChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCc------------
Q 047496           17 PHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNR------------   84 (204)
Q Consensus        17 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------   84 (204)
                      ...|..|.+|+.+++.+|.++......|. ..+|+.+.+..+ +. .++...+..+++|+.+.+..+-            
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~  249 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESG  249 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCC
T ss_pred             HHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCC
Confidence            34455566666666665555544444343 344444444422 22 3444444445555555554321            


Q ss_pred             ---------CccCCCccccCCCCCCEEeccCCccc-----ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCC
Q 047496           85 ---------FSGTIPSSITNASKLTLLKLGGNTFS-----GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK  150 (204)
Q Consensus        85 ---------~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  150 (204)
                               +.......|..+++|+.+.+.++...     .....+|..+++|+.+.+.. .+..++.     .++.+|+
T Consensus       250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-----~aF~~c~  323 (401)
T 4fdw_A          250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-----GLLGGNR  323 (401)
T ss_dssp             CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-----TTTTTCC
T ss_pred             ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-----hhhcCCC
Confidence                     11112334444555555555444332     22334455555555555552 2333332     4566666


Q ss_pred             CccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496          151 KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK  198 (204)
Q Consensus       151 ~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  198 (204)
                      +|+.+++..+ ++.....+|...  +|+.+++.+|.+....+..|..+
T Consensus       324 ~L~~l~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             SCCEEEECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             CccEEEECcc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCC
Confidence            6666666433 332333344333  56777777666655545555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.47  E-value=9.9e-15  Score=117.27  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             cCCCccEEEeeCCcCCCCCCcc-ccccccCccEEEeecc
Q 047496          148 NCKKLRSLNLIGNPLDGFLPSS-IGNLSMSLETLLITNC  185 (204)
Q Consensus       148 ~~~~L~~l~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n  185 (204)
                      .+++|++|++++|.+++..... +..++ +|++|++++|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~-~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCP-KLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCT-TCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCC-CcCEEeCcCc
Confidence            4566667777666654332222 22333 6666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.47  E-value=2e-15  Score=121.26  Aligned_cols=187  Identities=16%  Similarity=0.226  Sum_probs=104.7

Q ss_pred             CcceEEccCCccccccCh-hccCCCCCcEEEccCccccccC-CccccCCCccceeee-----------------------
Q 047496            1 MLKGIYLGYNKLHGEIPH-EIANLRNLEALALGMNNLVGVV-SAPIFNMSTLKIIIL-----------------------   55 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l-----------------------   55 (204)
                      +|++|++++|.+.+.... .+..+++|++|++++| +.... +.....+++|++|++                       
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            478888888886643322 3457778888888776 33211 111123455555555                       


Q ss_pred             -----------cCCcceeecCCccCCCCCCccEEEcC--C----CcCccCCC------ccccCCCCCCEEeccCCccccc
Q 047496           56 -----------INNSLFGSLPSRIGLSLPTVEHLNLE--L----NRFSGTIP------SSITNASKLTLLKLGGNTFSGL  112 (204)
Q Consensus        56 -----------~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~  112 (204)
                                 ..+.+++.....+...+++|+.|++.  +    +.++ ..+      ..+..+++|++|++++ .+++.
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence                       33333222222222235666666665  2    2222 111      1134556777777765 44444


Q ss_pred             ccccccC-CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcccc-ccccCccEEEeeccccccc
Q 047496          113 IPDTIGN-LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIG-NLSMSLETLLITNCSISGN  190 (204)
Q Consensus       113 ~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~  190 (204)
                      ....+.. +++|+.|++++|.+++...    ......+++|++|++++|.+++.....+. .++ +|+.|++++|.++..
T Consensus       447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~  521 (594)
T 2p1m_B          447 VFEYIGTYAKKMEMLSVAFAGDSDLGM----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRSLWMSSCSVSFG  521 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCCSSHHHH----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-GSSEEEEESSCCBHH
T ss_pred             HHHHHHHhchhccEeeccCCCCcHHHH----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCCHH
Confidence            3444444 7778888888887644321    11225678888899988888654443333 355 889999999888655


Q ss_pred             cchhh
Q 047496          191 IPQAI  195 (204)
Q Consensus       191 ~~~~~  195 (204)
                      ....+
T Consensus       522 ~~~~l  526 (594)
T 2p1m_B          522 ACKLL  526 (594)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=2.3e-12  Score=98.93  Aligned_cols=187  Identities=13%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      |+.+.+..+ +......+|.. .+|+.+.+.. .+......+|.++.+|+.+++.++.+. .++...+ ...+|+.+.+.
T Consensus       137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp  211 (401)
T 4fdw_A          137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF-VYAGIEEVLLP  211 (401)
T ss_dssp             CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT-TTCCCSEEECC
T ss_pred             ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE-eecccCEEEeC
Confidence            444555443 33233344545 3577777775 556566677888888888888888776 7777777 46788888887


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccc----------------------cccccCCCCCcEEEccCccCCCCccc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLI----------------------PDTIGNLRNLEWLGLAYNNLTSSTSK  139 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~----------------------~~~l~~l~~L~~L~l~~~~~~~~~~~  139 (204)
                      .+ +.......|..+++|+.+.+..+ ++...                      ..+|..+++|+.+.+.++.+...+..
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~  289 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA  289 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence            54 44345566777777888777653 22222                      23344445555555544433211000


Q ss_pred             chhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhh
Q 047496          140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTK  198 (204)
Q Consensus       140 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l  198 (204)
                      .....++.+|++|+.+++.. .+......+|.... +|+.+.+..+ ++...+.+|.++
T Consensus       290 ~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR-KVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC-SCCEEEECTT-CCEECTTSSSSS
T ss_pred             EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC-CccEEEECcc-ccEEcHHhCCCC
Confidence            00113455555555555552 23323333444444 5666666443 444445555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=1.6e-11  Score=92.50  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             eeeecCC-cceeecCCccCCCCCCccEEEcCC-CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEcc
Q 047496           52 IIILINN-SLFGSLPSRIGLSLPTVEHLNLEL-NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLA  129 (204)
Q Consensus        52 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~  129 (204)
                      .++.+++ .++ .+|. +. .+++|++|++++ |.+....+..|..+++|++|++++|.+++..+..|..+++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 565 5666 44 677777777775 77764444567777777777777777776666677777777777777


Q ss_pred             CccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          130 YNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      +|.+..++.     ..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~-----~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSW-----KTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCS-----TTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCH-----HHcccCC-ceEEEeeCCCcc
Confidence            777776653     2333333 777777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=2.7e-11  Score=91.21  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=80.1

Q ss_pred             eEEccCC-ccccccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            4 GIYLGYN-KLHGEIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         4 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      .++.+++ ++. .+|. +..+.+|++|+|++ |.+++..+..|..+++|+.|++++|.+. .+++..+..+++|+.|+++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCC
Confidence            4677776 666 5777 88888999999986 8888888788889999999999999987 4555444488999999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCccc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFS  110 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  110 (204)
                      +|.+. .++........|++|++.+|.+.
T Consensus        89 ~N~l~-~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCccc-eeCHHHcccCCceEEEeeCCCcc
Confidence            99988 45544333334999999888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.22  E-value=4.7e-12  Score=95.73  Aligned_cols=189  Identities=15%  Similarity=0.209  Sum_probs=119.4

Q ss_pred             cceEEccCCcccc-c-------cChhccCCCCCcEEEccCccccc---------cCCccccCCCccceeeecCCcceeec
Q 047496            2 LKGIYLGYNKLHG-E-------IPHEIANLRNLEALALGMNNLVG---------VVSAPIFNMSTLKIIILINNSLFGSL   64 (204)
Q Consensus         2 L~~L~l~~~~~~~-~-------~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~L~l~~~~~~~~~   64 (204)
                      ++.|.+..+.+.+ .       +..++..+++|+.|.+.......         .....+..+|+|+.|.++++.-. .+
T Consensus       109 v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l  187 (362)
T 2ra8_A          109 LKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SI  187 (362)
T ss_dssp             CSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BC
T ss_pred             cceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-ee
Confidence            4567777665442 1       12234467899999987643211         12233456789999999887422 34


Q ss_pred             CCccCCCCCCccEEEcCCCcCccCCCcccc--CCCCCCEEeccCC--ccccc-----ccccc--cCCCCCcEEEccCccC
Q 047496           65 PSRIGLSLPTVEHLNLELNRFSGTIPSSIT--NASKLTLLKLGGN--TFSGL-----IPDTI--GNLRNLEWLGLAYNNL  133 (204)
Q Consensus        65 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~l~l~~~--~~~~~-----~~~~l--~~l~~L~~L~l~~~~~  133 (204)
                      +. +  .+++|++|++..+.+.......+.  .+++|++|+++.+  ...+.     +...+  ..+++|+.|++.+|.+
T Consensus       188 ~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          188 GK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             cc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            43 2  478999999998887643333343  6789999988532  11111     11122  3578999999999887


Q ss_pred             CCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc----cccccCccEEEeeccccccccchhhhh
Q 047496          134 TSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI----GNLSMSLETLLITNCSISGNIPQAIST  197 (204)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~  197 (204)
                      .+.... .+ .....+++|++|+++.|.+.+.....+    ..++ +|+.|++++|.++...-..+..
T Consensus       265 ~~~~~~-~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          265 QNVVVE-MF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             HHHHHH-HH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHHHHHHHHH
T ss_pred             chHHHH-HH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCcCCHHHHHHHHH
Confidence            643211 11 112357899999999999876433333    3445 8999999999988765555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.13  E-value=1.8e-11  Score=92.50  Aligned_cols=180  Identities=16%  Similarity=0.210  Sum_probs=116.6

Q ss_pred             CcceEEccCCccc---------cccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC-C
Q 047496            1 MLKGIYLGYNKLH---------GEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG-L   70 (204)
Q Consensus         1 ~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~   70 (204)
                      +|+.|.+.+....         ..+...+..+|+|+.|.++++.-.. .+. + .+++|+.|++..+.+.......+. .
T Consensus       140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            4778888654321         1244556788999999999873111 222 3 378999999998877533322222 2


Q ss_pred             CCCCccEEEcCCC--cCcc-----CCCccc--cCCCCCCEEeccCCcccccccccc---cCCCCCcEEEccCccCCCCcc
Q 047496           71 SLPTVEHLNLELN--RFSG-----TIPSSI--TNASKLTLLKLGGNTFSGLIPDTI---GNLRNLEWLGLAYNNLTSSTS  138 (204)
Q Consensus        71 ~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~  138 (204)
                      .+|+|+.|++..+  ....     .+...+  ..+++|++|++.+|.+....+..+   ..+++|+.|+++.|.+.+...
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            5899999998532  1110     111222  247899999999998875433333   357899999999998866421


Q ss_pred             cchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccc
Q 047496          139 KLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS  186 (204)
Q Consensus       139 ~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  186 (204)
                      . .+...+..+++|+.|+++.|.+++.....+...-  ...++++.++
T Consensus       297 ~-~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          297 R-LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             H-HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             H-HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            1 1234456789999999999998866555554421  2557887775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.93  E-value=8.5e-11  Score=80.76  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=79.9

Q ss_pred             CCCCccEEEcCCC-cCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccch
Q 047496           71 SLPTVEHLNLELN-RFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLS  141 (204)
Q Consensus        71 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~  141 (204)
                      ..+.|++|++++| .+...    +...+...++|++|++++|.+....    ...+...++|+.|++++|.+.+.. ...
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g-~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH-HHH
Confidence            5667777777777 66532    2334455677888888888776432    344556678889999988886542 223


Q ss_pred             hhhccccCCCccEEEe--eCCcCCCCCCc----cccccccCccEEEeeccccccc
Q 047496          142 FLSSLANCKKLRSLNL--IGNPLDGFLPS----SIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l--~~n~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      +..++...+.|++|++  ++|.+.++...    .+...+ +|++|++++|.+...
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSHHHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CcCEEeccCCCCChH
Confidence            4567777888999999  88888754333    334445 899999999988643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=2.1e-09  Score=73.78  Aligned_cols=118  Identities=14%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             ccCCCccceeeecCC-cceee----cCCccCCCCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCccccc--
Q 047496           44 IFNMSTLKIIILINN-SLFGS----LPSRIGLSLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGL--  112 (204)
Q Consensus        44 ~~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~--  112 (204)
                      +...+.|++|++++| .+...    +...+. ..+.|++|++++|.+...    +...+...++|++|++++|.+...  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~-~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALK-TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHT-TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHH-hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            344556666666666 54321    222222 456677777777776532    223344556788888888877643  


Q ss_pred             --ccccccCCCCCcEEEc--cCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          113 --IPDTIGNLRNLEWLGL--AYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       113 --~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                        +...+...+.|+.|++  ++|.+.... ...+...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g-~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNV-EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHH-HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHH-HHHHHHHHHhCCCcCEEeccCCCCC
Confidence              2455667788889998  778776542 1234466777788999999988875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.71  E-value=4.7e-07  Score=69.26  Aligned_cols=56  Identities=20%  Similarity=0.314  Sum_probs=35.8

Q ss_pred             hccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          144 SSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       144 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      .++.+|.+|+.+++..+ ++.....+|.... +|+.+.+..+ ++.....+|.+|..|+
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             eeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            45667777777777654 3323344555555 7777777654 5556667777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.70  E-value=1e-08  Score=69.21  Aligned_cols=82  Identities=13%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             CCCEEeccCCcccccccccccCCCCCcEEEccCcc-CCCCcccchhhhcccc----CCCccEEEeeCCc-CCCCCCcccc
Q 047496           98 KLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLAN----CKKLRSLNLIGNP-LDGFLPSSIG  171 (204)
Q Consensus        98 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~----~~~L~~l~l~~n~-~~~~~~~~~~  171 (204)
                      +|++|++++|.++......+..+++|+.|++++|. +++.     .+..++.    +++|++|++++|. +++.....+.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            45555665555554444445556666666666653 3222     1122332    2346666666653 5554444455


Q ss_pred             ccccCccEEEeecc
Q 047496          172 NLSMSLETLLITNC  185 (204)
Q Consensus       172 ~~~~~L~~L~l~~n  185 (204)
                      .++ +|++|++++|
T Consensus       137 ~~~-~L~~L~L~~c  149 (176)
T 3e4g_A          137 HFR-NLKYLFLSDL  149 (176)
T ss_dssp             GCT-TCCEEEEESC
T ss_pred             cCC-CCCEEECCCC
Confidence            554 6666666666

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.66  E-value=5.7e-07  Score=68.81  Aligned_cols=174  Identities=14%  Similarity=0.077  Sum_probs=98.1

Q ss_pred             hhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcC------------
Q 047496           18 HEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRF------------   85 (204)
Q Consensus        18 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------   85 (204)
                      .+|..+.+|+.+.+..+ +.......|.++.+|+.+++..+- . .+.+..+..+..|+.+.+..+..            
T Consensus       156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~-~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l  232 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNL-K-IIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV  232 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTC-C-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred             hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCc-e-EeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence            34666777777777643 233445556666666666665442 1 33333333444444333322110            


Q ss_pred             ---------ccCCCccccCCCCCCEEeccCCccc--------------------ccccccccCCCCCcEEEccCccCCCC
Q 047496           86 ---------SGTIPSSITNASKLTLLKLGGNTFS--------------------GLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        86 ---------~~~~~~~~~~~~~L~~l~l~~~~~~--------------------~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                               .......+..+..++.+.+..+...                    ......+..+.+|+.+.+..+ +..+
T Consensus       233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I  311 (394)
T 4fs7_A          233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFI  311 (394)
T ss_dssp             CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEE
T ss_pred             ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-ccee
Confidence                     1011223344455555554432111                    011234556677777777654 4444


Q ss_pred             cccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhcc
Q 047496          137 TSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQN  203 (204)
Q Consensus       137 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~  203 (204)
                      +.     .++.+|.+|+.+++..+ +......+|.... +|+.+.+..+ ++.....+|.+|..|+.
T Consensus       312 ~~-----~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          312 GE-----EAFESCTSLVSIDLPYL-VEEIGKRSFRGCT-SLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             CT-----TTTTTCTTCCEECCCTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             ch-----hhhcCCCCCCEEEeCCc-ccEEhHHhccCCC-CCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            32     57888899999998654 5534456677777 8999999876 77777889998887763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.64  E-value=4.5e-07  Score=69.40  Aligned_cols=189  Identities=14%  Similarity=0.113  Sum_probs=115.1

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcce--------------------
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF--------------------   61 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------------------   61 (204)
                      |+.+.+.++. .......|..+.+|+.+.+..+ ++......|..+..|+.+.+..+...                    
T Consensus       164 L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~  241 (394)
T 4fs7_A          164 LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF  241 (394)
T ss_dssp             CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC
T ss_pred             CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCc
Confidence            5556665432 2233345667777777777654 33333334444444444433222100                    


Q ss_pred             eecCCccCCCCCCccEEEcCCCcCc--------------------cCCCccccCCCCCCEEeccCCcccccccccccCCC
Q 047496           62 GSLPSRIGLSLPTVEHLNLELNRFS--------------------GTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR  121 (204)
Q Consensus        62 ~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~  121 (204)
                      ..+....+..+..++.+.+..+...                    ......+..+.+|+.+.+..+ +......+|..+.
T Consensus       242 ~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~  320 (394)
T 4fs7_A          242 TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT  320 (394)
T ss_dssp             CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred             eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCC
Confidence            1233344445666666666544321                    011234556778888887654 5545567899999


Q ss_pred             CCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhh
Q 047496          122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLF  201 (204)
Q Consensus       122 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l  201 (204)
                      +|+.+++..+ +..++.     .++.+|.+|+.+++..+ +......+|.... +|+.+++..+ ++ .+..+|.++..|
T Consensus       321 ~L~~i~lp~~-v~~I~~-----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~lp~~-~~-~~~~~F~~c~~L  390 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGK-----RSFRGCTSLSNINFPLS-LRKIGANAFQGCI-NLKKVELPKR-LE-QYRYDFEDTTKF  390 (394)
T ss_dssp             TCCEECCCTT-CCEECT-----TTTTTCTTCCEECCCTT-CCEECTTTBTTCT-TCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred             CCCEEEeCCc-ccEEhH-----HhccCCCCCCEEEECcc-ccEehHHHhhCCC-CCCEEEECCC-CE-EhhheecCCCCC
Confidence            9999999754 555543     68999999999999877 5545566777777 9999999876 33 335678888887


Q ss_pred             cc
Q 047496          202 QN  203 (204)
Q Consensus       202 ~~  203 (204)
                      ++
T Consensus       391 ~~  392 (394)
T 4fs7_A          391 KW  392 (394)
T ss_dssp             EE
T ss_pred             cE
Confidence            64

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.57  E-value=1.4e-08  Score=68.50  Aligned_cols=93  Identities=9%  Similarity=0.046  Sum_probs=68.8

Q ss_pred             cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCc-ceeecCCccCCC---CCCccEEEcCCCc-CccCCC
Q 047496           16 IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-LFGSLPSRIGLS---LPTVEHLNLELNR-FSGTIP   90 (204)
Q Consensus        16 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~   90 (204)
                      +|.....-..|+.|++++|.++......+..+++|+.|++++|. +++..-..+...   .++|++|++++|. ++....
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            44333234579999999999887766777889999999999996 554333334311   2479999999985 775555


Q ss_pred             ccccCCCCCCEEeccCCc
Q 047496           91 SSITNASKLTLLKLGGNT  108 (204)
Q Consensus        91 ~~~~~~~~L~~l~l~~~~  108 (204)
                      ..+..+++|++|++++|.
T Consensus       133 ~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGGGCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            567788999999999985

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.55  E-value=2.1e-06  Score=65.61  Aligned_cols=112  Identities=12%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             CCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhh
Q 047496           65 PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLS  144 (204)
Q Consensus        65 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  144 (204)
                      ....+..+..|+.+.+...... .....+..+.+|+.+.+.. .+......+|..+.+|+.+.+..+ +..++.     .
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-----~  328 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD-----D  328 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT-----T
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH-----h
Confidence            3444556677777776654433 4445566677777777653 333344456777777777777653 433332     4


Q ss_pred             ccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccc
Q 047496          145 SLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS  186 (204)
Q Consensus       145 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~  186 (204)
                      +|.+|.+|+++.+..+ ++.....+|.... +|+.+++.++.
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~-~L~~i~~~~~~  368 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCT-ALNNIEYSGSR  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCT-TCCEEEESSCH
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCC-CCCEEEECCce
Confidence            6777777777777543 4423344555555 67777776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.42  E-value=4.6e-06  Score=63.37  Aligned_cols=141  Identities=15%  Similarity=0.122  Sum_probs=72.2

Q ss_pred             CCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEE
Q 047496           47 MSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWL  126 (204)
Q Consensus        47 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L  126 (204)
                      ...++.+.+...- . .+....+..+..|+.+.+..+ +.......+..+.+++.+.+... +......+|..+.+|+.+
T Consensus       216 ~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          216 GKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             CSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            3444444443321 1 333444445566666665543 22233445555666666666433 332334456666667777


Q ss_pred             EccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496          127 GLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY  199 (204)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  199 (204)
                      .+.++.+..++.     .++.+|.+|+.+++..+ +......+|.... +|+.+.+..+ ++.....+|.++.
T Consensus       292 ~l~~~~i~~I~~-----~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          292 VMDNSAIETLEP-----RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK-ALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             EECCTTCCEECT-----TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccceehh-----hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC-CCCEEEECCc-cCEEchhHhhCCC
Confidence            666665555543     45666667777766543 3323334454444 6666666543 4444455555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.37  E-value=9.6e-06  Score=61.58  Aligned_cols=143  Identities=15%  Similarity=0.189  Sum_probs=104.9

Q ss_pred             hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496           19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK   98 (204)
Q Consensus        19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   98 (204)
                      .+..+..++.+.+..+ +.......|..+..|+.+.+..+ ++ .+....+..+..|+.+.+..+ +.......|..+.+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence            3445677888877644 44455667788899999999776 33 677777778899999998764 33245567889999


Q ss_pred             CCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccc
Q 047496           99 LTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGN  172 (204)
Q Consensus        99 L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~  172 (204)
                      |+.+.+.++.++.....+|..+.+|+.+.+..+ +..++.     .++.+|.+|+++.+..+ ++.....+|..
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-----~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-----YAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-----HHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            999999888887666788999999999999764 555543     58999999999988654 44233344443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=3.8e-07  Score=65.83  Aligned_cols=41  Identities=32%  Similarity=0.371  Sum_probs=18.2

Q ss_pred             CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       120 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      +++|+.|++++|.+..++.   ++..+..+++|+.|++++|.+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~---l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDD---MSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGG---GTTHHHHSTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCCCCcc---chhHHhhCCCCCEEECCCCccC
Confidence            4445555555554444321   1122334445555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=1.9e-07  Score=67.43  Aligned_cols=81  Identities=28%  Similarity=0.297  Sum_probs=60.1

Q ss_pred             cCCCCCcEEEccCcccccc--CCccccCCCccceeeecCCcceeec-CCccCCCCCCccEEEcCCCcCccCCC-------
Q 047496           21 ANLRNLEALALGMNNLVGV--VSAPIFNMSTLKIIILINNSLFGSL-PSRIGLSLPTVEHLNLELNRFSGTIP-------   90 (204)
Q Consensus        21 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-------   90 (204)
                      ..+++|+.|++++|.+.+.  .+..+..+++|+.|++++|.+.+.- ...+. .+ +|++|++.+|.+....+       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHH
Confidence            4689999999999999874  3455668999999999999987321 11222 33 89999999999875444       


Q ss_pred             ccccCCCCCCEEe
Q 047496           91 SSITNASKLTLLK  103 (204)
Q Consensus        91 ~~~~~~~~L~~l~  103 (204)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2356778888876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.91  E-value=2e-06  Score=59.11  Aligned_cols=116  Identities=17%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             CCCCccEEEcCCC-cCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccch
Q 047496           71 SLPTVEHLNLELN-RFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLS  141 (204)
Q Consensus        71 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~  141 (204)
                      .-+.|++|+++++ .+...    +.+.+..-+.|++|++++|.+.+..    ...+..-+.|+.|+++.|.+.... ...
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-a~a  117 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR  117 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-HHH
Confidence            4456777777764 55422    2344455567778888777776433    334455677888888888776543 234


Q ss_pred             hhhccccCCCccEEEeeCC---cCCCC----CCccccccccCccEEEeeccccc
Q 047496          142 FLSSLANCKKLRSLNLIGN---PLDGF----LPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l~~n---~~~~~----~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +.+++...+.|++|++++|   .+.+.    +...+...+ +|+.|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-CcCeEeccCCCcc
Confidence            5566777777888888755   33322    223344455 7888888777554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.62  E-value=2.2e-05  Score=53.91  Aligned_cols=118  Identities=10%  Similarity=0.088  Sum_probs=77.2

Q ss_pred             cCCCccceeeecCC-cceee----cCCccCCCCCCccEEEcCCCcCccCCC----ccccCCCCCCEEeccCCcccccc--
Q 047496           45 FNMSTLKIIILINN-SLFGS----LPSRIGLSLPTVEHLNLELNRFSGTIP----SSITNASKLTLLKLGGNTFSGLI--  113 (204)
Q Consensus        45 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~--  113 (204)
                      ..-+.|+.|+++++ .+.+.    +.+.+. .-..|+.|++.+|.+.....    ..+..-+.|++|++++|.+....  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            34567788888774 55321    223333 45678888888888874333    33445678999999999887543  


Q ss_pred             --cccccCCCCCcEEEccCccCCCCc--ccchhhhccccCCCccEEEeeCCcCC
Q 047496          114 --PDTIGNLRNLEWLGLAYNNLTSST--SKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       114 --~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                        ..++..-..|+.|+++++....+.  ....+..++...+.|++|+++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              345666778999999865331221  12245567788889999999877543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.24  E-value=0.00067  Score=43.36  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             cEEEccCcccc-ccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCc
Q 047496           27 EALALGMNNLV-GVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFS   86 (204)
Q Consensus        27 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   86 (204)
                      ..++.+++.++ ...|..+  -.++++|++++|.++ .++.+.+..+++|+.|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            35666666665 1223222  125777777777776 677666666777777777777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.0012  Score=42.13  Aligned_cols=56  Identities=27%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             EEeccCCccc-ccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          101 LLKLGGNTFS-GLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       101 ~l~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      .++.++..++ ..+|..+  ..+++.|+|++|.++.++.     ..+..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~-----~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPP-----GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCT-----TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccCh-----hhhhhccccCEEEecCCCee
Confidence            5666666665 2334322  2458888888888888865     46777888888888888764

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.51  E-value=3.7  Score=24.43  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=23.5

Q ss_pred             cccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496          112 LIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus       112 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ....+|..+..|+.+.+..+ ++.+..     .+|.+|.+|+.+.+.+.
T Consensus        11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~-----~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A           11 MDKSLFAGNTVIREITVQPN-IGLLYD-----GMFSGCTALEKLILTGE   53 (100)
T ss_dssp             SCSCTTTTCTTCCCEEECTT-SSCCCT-----TSSTTCTTCCCEEECCS
T ss_pred             ecHHHhcCCCCCcEEEcCCc-hheEcH-----HHHhccCCccEEEEcCC
Confidence            34455666666666666553 333332     45666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 6e-11
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 10/174 (5%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
              + L  NK+      +  NL+NL  L L  N +  +       +  L+ + L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL- 91

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
             LP ++  +L  +     E+ +   ++ + +     +  L       SG+       ++
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMK 150

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSM 175
            L ++ +A  N+T+    L           L  L+L GN +     +S+  L+ 
Sbjct: 151 KLSYIRIADTNITTIPQGL--------PPSLTELHLDGNKITKVDAASLKGLNN 196

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 63  SLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN 122
            +P  +    P    L+L+ N+ +        N   L  L L  N  S + P     L  
Sbjct: 24  KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 123 LEWLGLAYNNLTS 135
           LE L L+ N L  
Sbjct: 81  LERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 6/155 (3%)

Query: 9   YNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRI 68
             K  G        ++ L  + +   N+  +   P     +L  + L  N +     + +
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASL 191

Query: 69  GLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGL 128
              L  +  L L  N  S     S+ N   L  L L  N     +P  + + + ++ + L
Sbjct: 192 K-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 249

Query: 129 AYNNLTS-STSKLSFLSSLANCKKLRSLNLIGNPL 162
             NN+++  ++                ++L  NP+
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 10/169 (5%)

Query: 22  NLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE 81
           N   +  L        G+ +     M  L  I + + ++  ++P  +    P++  L+L+
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL---PPSLTELHLD 179

Query: 82  LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLS 141
            N+ +    +S+   + L  L L  N+ S +   ++ N  +L  L L  N L        
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------K 233

Query: 142 FLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN 190
               LA+ K ++ + L  N +     +       + +    +  S+  N
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 3e-10
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 21/183 (11%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
           L  + L  N+L       +A+L NL  L L  N +  +  AP+  ++ L  + L  N + 
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQIS 276

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
              P      L  + +L L  N+      S I+N   LT L L  N  S + P  + +L 
Sbjct: 277 NISPLA---GLTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP--VSSLT 329

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
            L+ L  A N ++        +SSLAN   +  L+   N +    P  + NL+  +  L 
Sbjct: 330 KLQRLFFANNKVSD-------VSSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLG 379

Query: 182 ITN 184
           + +
Sbjct: 380 LND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 5   IYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSL 64
           +    N++    P  I    NL+ L+L  N L  +    + +++ L  + L NN +    
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 257

Query: 65  PSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLE 124
           P      L  +  L L  N+ S   P +   A          N         I NL+NL 
Sbjct: 258 PLS---GLTKLTELKLGANQISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLT 310

Query: 125 WLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITN 184
           +L L +NN++        +S +++  KL+ L    N +     SS+ NL+ ++  L   +
Sbjct: 311 YLTLYFNNISD-------ISPVSSLTKLQRLFFANNKVSD--VSSLANLT-NINWLSAGH 360

Query: 185 CSISGNIP 192
             IS   P
Sbjct: 361 NQISDLTP 368

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 9e-09
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 73  PTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNN 132
             +  L+L  NR  GT+P  +T    L  L +  N   G IP   GNL+  +    A N 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

Query: 133 L 133
            
Sbjct: 303 C 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 8e-08
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 104 LGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL 162
           L  N   G +P  +  L+ L  L +++NNL         +    N ++        N  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 6   YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP 65
            L  N+++G +P  +  L+ L +L +  NNL G +     N+    +    NN      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 4e-06
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 45  FNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKL 104
                L  + L NN ++G+LP  +   L  +  LN+  N   G IP    N  +  +   
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298

Query: 105 GGNTF 109
             N  
Sbjct: 299 ANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 51/252 (20%)

Query: 2   LKGIYLGYNKLHG--EIPHEIANLRNLEALAL-GMNNLVGVVSAPIFNMSTLKIIILINN 58
           +  + L    L     IP  +ANL  L  L + G+NNLVG +   I  ++ L  + + + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 59  SLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIG 118
           ++ G++P  +      V       N  SGT+P SI++   L  +   GN  SG IPD+ G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLSSLAN------------------------------ 148
           +   L        N  +     +F +                                  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 149 ------------CKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
                        K L  L+L  N + G LP  +  L   L +L ++  ++ G IPQ  +
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQGGN 289

Query: 197 TKYL----FQNN 204
            +      + NN
Sbjct: 290 LQRFDVSAYANN 301

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 41/184 (22%), Positives = 66/184 (35%), Gaps = 5/184 (2%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLF 61
            + I+L  N++           RNL  L L  N L  + +A    ++ L+ + L +N+  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 62  GSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLR 121
            S+       L  +  L+L+        P      + L  L L  N    L  DT  +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 122 NLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLL 181
           NL  L L  N ++S         +      L  L L  N +    P +  +L   +   L
Sbjct: 154 NLTHLFLHGNRISSVPE-----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 182 ITNC 185
             N 
Sbjct: 209 FANN 212

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 7/176 (3%)

Query: 1   MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSL 60
            L  ++L    L    P     L  L+ L L  N L  +      ++  L  + L  N +
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165

Query: 61  FGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNL 120
              +P R    L +++ L L  NR +   P +  +  +L  L L  N  S L  + +  L
Sbjct: 166 SS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 121 RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMS 176
           R L++L L  N            +       L+      + +   LP  +    + 
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWA------WLQKFRGSSSEVPCSLPQRLAGRDLK 274

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 26/182 (14%)

Query: 2   LKGIYLGYNKLHGEIPHEIANLRNLEALALG--------------------MNNLVGVVS 41
              ++L  N L+      +     L  L L                     +++      
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 42  APIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTL 101
             +        ++ ++ +   SLP      L  ++ L L+ N      P  +T   KL  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 102 LKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP 161
           L L  N  + L    +  L NL+ L L  N+L +                L    L GNP
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYT------IPKGFFGSHLLPFAFLHGNP 206

Query: 162 LD 163
             
Sbjct: 207 WL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 8e-07
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 119 NLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGF----LPSSIGNLS 174
               L  L LA  +++ S+   S  ++L     LR L+L  N L       L  S+    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 175 MSLETLLITNCSISGNIPQAISTKYLFQNN 204
             LE L++ +   S  +   +    L ++ 
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQA--LEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 99  LTLLKLGGNTFSGL-IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL 157
           +  L +     S     + +  L+  + + L    LT +  K    S+L     L  LNL
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNL 62

Query: 158 IGNPLDGF----LPSSIGNLSMSLETLLITNC 185
             N L       +   +   S  ++ L + NC
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 4/92 (4%)

Query: 95  NASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK 150
             S L +L L     S      +  T+    +L  L L+ N L  +       S      
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 151 KLRSLNLIGNPLDGFLPSSIGNLSMSLETLLI 182
            L  L L        +   +  L     +L +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 9e-05
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 75  VEHLNLELNRFSGTIPSSITNA-SKLTLLKLGGNTFSG----LIPDTIGNLRNLEWLGLA 129
           ++ L+++    S    + +     +  +++L     +      I   +     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 130 YNNLTSSTSKLSFLSSLANCKKLRSLNL 157
            N L                 K++ L+L
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 9e-04
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 41  SAPIFNMSTLKIIILINNSLFGSLPSRIGLSL---PTVEHLNLELNRFSGTIPSSITNA- 96
                  S L+++ L +  +  S  S +  +L    ++  L+L  N         +  + 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 97  ----SKLTLLKLGGNTFSGLIPDTIGNLR 121
                 L  L L    +S  + D +  L 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 107 NTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSL-----------ANCKKLRSL 155
           N  S  I        +LE L ++ N L    +    L  L              + L+ L
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQL 329

Query: 156 NLIGNPLDGF--LPSSIGNLSMS 176
           ++  NPL  F  +P S+ +L M+
Sbjct: 330 HVEYNPLREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 34/118 (28%)

Query: 6   YLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLP 65
               N    EI        +LE L +  N L                             
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKL----------------------------- 296

Query: 66  SRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNL 123
             +    P +E L    N  +  +P    N   L  L +  N      PD   ++ +L
Sbjct: 297 IELPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLREF-PDIPESVEDL 349

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 100 TLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIG 159
             L L G       PD  G L +   +                 S      +++ ++L  
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSN 55

Query: 160 NPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS 196
           + ++      I +    L+ L +    +S  I   ++
Sbjct: 56  SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 92

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 5/81 (6%)

Query: 77  HLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS 136
            L L  N        +        L     N    L  D          L ++   + S 
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 137 TSKLSFLSSLANCKKLRSLNL 157
            S       L N KKLR+ + 
Sbjct: 217 PS-----YGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 2/47 (4%)

Query: 89  IPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTS 135
                  AS   +L +       L    + NL+ L        NL  
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKK 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.93  E-value=6.6e-26  Score=167.25  Aligned_cols=198  Identities=29%  Similarity=0.463  Sum_probs=144.8

Q ss_pred             cceEEccCCcccc--ccChhccCCCCCcEEEccC-ccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEE
Q 047496            2 LKGIYLGYNKLHG--EIPHEIANLRNLEALALGM-NNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHL   78 (204)
Q Consensus         2 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L   78 (204)
                      ++.|+|+++.+.+  .+|+.++.+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..+..+. .+++|+.+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~-~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc-chhhhccc
Confidence            6778888888775  4788888999999999986 678877888888899999999999888754444444 67778888


Q ss_pred             EcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCC-cEEEccCccCCCCcccc-----------------
Q 047496           79 NLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNL-EWLGLAYNNLTSSTSKL-----------------  140 (204)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~-----------------  140 (204)
                      ++.+|.+....|..+..++.++++++++|.+.+..|..+..+..+ +.+++++|.+.......                 
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888887776677777777777777777777666666555554443 44444444332110000                 


Q ss_pred             ------------------------hhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhh
Q 047496          141 ------------------------SFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       141 ------------------------~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                                              ..+..+..+++++.|++++|++++.+|..+..++ +|++|++++|+++|.+|. ++
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~-~L~~L~Ls~N~l~g~iP~-~~  288 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQ-GG  288 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCC-ST
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCC-CCCEEECcCCcccccCCC-cc
Confidence                                    0113456678899999999999989999999998 999999999999998885 45


Q ss_pred             hhhhhc
Q 047496          197 TKYLFQ  202 (204)
Q Consensus       197 ~l~~l~  202 (204)
                      ++.+|+
T Consensus       289 ~L~~L~  294 (313)
T d1ogqa_         289 NLQRFD  294 (313)
T ss_dssp             TGGGSC
T ss_pred             cCCCCC
Confidence            555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-24  Score=158.21  Aligned_cols=195  Identities=23%  Similarity=0.231  Sum_probs=158.6

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      +++|+|++|++....+..|..+++|+++++++|.+....+..+..+..++.+....+.....+++..+..+++|++|++.
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            57899999998855556788999999999999998887777777778888877765443346666666678899999999


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      ++.+....+..+....+|+.+++.+|.++...+..+..+++|+.|++++|.+..++.     .++.++++|+.+++++|.
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-----~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-----RAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSC
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-----hhhccccccchhhhhhcc
Confidence            988874555667778889999999998887666778888899999999998877654     567888899999999999


Q ss_pred             CCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +++..|..|..++ +|++|++++|.+++..+++|..++.|+
T Consensus       189 l~~i~~~~f~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         189 VAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             CCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             ccccChhHhhhhh-hcccccccccccccccccccccccccC
Confidence            8877888888887 899999999999888888888877765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-23  Score=151.74  Aligned_cols=176  Identities=24%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      +++|+|++|.+....+..|..+++|++|++++|.++...  .+..+++|++|++++|.+. ..+..+. .+++|+.|++.
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~L~~L~l~  108 (266)
T d1p9ag_          33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQ-TLPALTVLDVS  108 (266)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCS-SCCCCTT-TCTTCCEEECC
T ss_pred             CCEEECcCCcCCCcCHHHhhccccccccccccccccccc--ccccccccccccccccccc-ccccccc-ccccccccccc
Confidence            455666666665444445556666666666666655332  2344556666666666554 3333332 55666666666


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      ++.+....+..+..+.+++++.+++|.+....+..+..++.++.+++++|+++.++.     ..+..+++|++|++++|.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc-----cccccccccceeecccCC
Confidence            665553344445555666666666666654444555556666666666666665543     345556666666666666


Q ss_pred             CCCCCCccccccccCccEEEeeccccc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      ++ .+|..+..+. +|+.|++++|++.
T Consensus       184 L~-~lp~~~~~~~-~L~~L~L~~Np~~  208 (266)
T d1p9ag_         184 LY-TIPKGFFGSH-LLPFAFLHGNPWL  208 (266)
T ss_dssp             CC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             Cc-ccChhHCCCC-CCCEEEecCCCCC
Confidence            66 5565665555 6666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-23  Score=150.94  Aligned_cols=186  Identities=24%  Similarity=0.317  Sum_probs=160.1

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      .+.+.++++++ .+|+.+.  +++++|++++|.+++..+..|..+++|++|++++|.++ .++.. . .+++|++|++++
T Consensus        13 ~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L~Ls~   86 (266)
T d1p9ag_          13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTLDLSH   86 (266)
T ss_dssp             CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEEECCS
T ss_pred             eEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-cccccccccccc
Confidence            34577777777 5776664  58999999999999888888999999999999999997 66643 2 689999999999


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL  162 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  162 (204)
                      |.+. ..+..+..+++|++++++++.+....+..+..+.+++.+++++|.+..++.     ..+..++.++.+++++|.+
T Consensus        87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-----~~~~~l~~l~~l~l~~N~l  160 (266)
T d1p9ag_          87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNL  160 (266)
T ss_dssp             SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCC
T ss_pred             cccc-ccccccccccccccccccccccceeeccccccccccccccccccccceecc-----ccccccccchhcccccccc
Confidence            9998 667788899999999999999987777788899999999999999988865     5677889999999999999


Q ss_pred             CCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          163 DGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ++..+..|..++ +|++|++++|+++ .+|+.+..++.|+
T Consensus       161 ~~~~~~~~~~l~-~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         161 TELPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             SCCCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             cccCcccccccc-ccceeecccCCCc-ccChhHCCCCCCC
Confidence            977777788888 9999999999998 7888887777664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.7e-21  Score=142.81  Aligned_cols=179  Identities=26%  Similarity=0.363  Sum_probs=112.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccC-----------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIG-----------   69 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------   69 (204)
                      ++++|++++|++....+..|..+++|++|++++|.+....+..|..+++|+.|++++|.++ .+|....           
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhcccc
Confidence            3789999999998444557899999999999999999888888999999999999988765 3443221           


Q ss_pred             ------------------------------------CCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccc
Q 047496           70 ------------------------------------LSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI  113 (204)
Q Consensus        70 ------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  113 (204)
                                                          ..+++|+.+++.++.+. .++..  ..+++++|+++++......
T Consensus       111 ~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEEC
T ss_pred             chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCC
Confidence                                                11233444444443332 12211  1234455555555444444


Q ss_pred             cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccc
Q 047496          114 PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGN  190 (204)
Q Consensus       114 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  190 (204)
                      +..+..++.++.|++++|.+..++.     ..+.++++|++|++++|+++ .+|.++..++ +|++|++++|+|+..
T Consensus       188 ~~~~~~~~~l~~L~~s~n~l~~~~~-----~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~-~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         188 AASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYLHNNNISAI  257 (305)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECT-----TTGGGSTTCCEEECCSSCCS-SCCTTTTTCS-SCCEEECCSSCCCCC
T ss_pred             hhHhhcccccccccccccccccccc-----ccccccccceeeeccccccc-cccccccccc-CCCEEECCCCccCcc
Confidence            4555556666666666666655532     34556666666666666666 4555666665 666666666666643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=9.5e-23  Score=150.15  Aligned_cols=180  Identities=31%  Similarity=0.433  Sum_probs=126.7

Q ss_pred             CcceEEccC-CccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEE
Q 047496            1 MLKGIYLGY-NKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         1 ~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      +|++|+|++ |++.+.+|+.++++++|++|++++|.+.+..+..+..+..|+.+++++|.+.+.+|..+. .++.++.++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~-~l~~L~~l~  155 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc-cCcccceee
Confidence            478899986 678888899999999999999999888776665555566666666666655544444444 455555555


Q ss_pred             cCCCcCccCCCccc------------------------------------------------cCCCCCCEEeccCCcccc
Q 047496           80 LELNRFSGTIPSSI------------------------------------------------TNASKLTLLKLGGNTFSG  111 (204)
Q Consensus        80 l~~~~~~~~~~~~~------------------------------------------------~~~~~L~~l~l~~~~~~~  111 (204)
                      +.+|.+...+|..+                                                ..+++++.+++.++.+.+
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55554432333222                                                233455556666665554


Q ss_pred             cccccccCCCCCcEEEccCccCC-CCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccc-ccc
Q 047496          112 LIPDTIGNLRNLEWLGLAYNNLT-SSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCS-ISG  189 (204)
Q Consensus       112 ~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~  189 (204)
                      .. ..+..+++++.|++++|+++ .+|      ..++++++|++|++++|.++|.+|. +..+. +|+.+++++|+ +.+
T Consensus       236 ~~-~~~~~~~~L~~L~Ls~N~l~g~iP------~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~-~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         236 DL-GKVGLSKNLNGLDLRNNRIYGTLP------QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ-RFDVSAYANNKCLCG  306 (313)
T ss_dssp             BG-GGCCCCTTCCEEECCSSCCEECCC------GGGGGCTTCCEEECCSSEEEEECCC-STTGG-GSCGGGTCSSSEEES
T ss_pred             cc-cccccccccccccCccCeecccCC------hHHhCCCCCCEEECcCCcccccCCC-cccCC-CCCHHHhCCCccccC
Confidence            33 34667788999999999887 445      6788999999999999999998884 56777 89999999996 554


Q ss_pred             c
Q 047496          190 N  190 (204)
Q Consensus       190 ~  190 (204)
                      .
T Consensus       307 ~  307 (313)
T d1ogqa_         307 S  307 (313)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.4e-21  Score=139.94  Aligned_cols=189  Identities=21%  Similarity=0.244  Sum_probs=159.6

Q ss_pred             eEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC-C
Q 047496            4 GIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE-L   82 (204)
Q Consensus         4 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~   82 (204)
                      ..+.+++++. .+|..+.  ..+++|++++|+++...+..|.++++|++|+++++.+. .++...+..++.++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccccc
Confidence            3456666666 6666554  57899999999999888888999999999999999997 6666666578889998865 4


Q ss_pred             CcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcC
Q 047496           83 NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPL  162 (204)
Q Consensus        83 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  162 (204)
                      +.+....+..+..+++|++++++++.+....+..+....+|+.+++++|.++.++.     .+++.+++|++|++++|.+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~-----~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-----DTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCC
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh-----hHhccccchhhcccccCcc
Confidence            55664556778999999999999999987777788889999999999999998864     5688889999999999999


Q ss_pred             CCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          163 DGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       163 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ....+.+|.+++ +|+++++++|.+++..|..|..+++++
T Consensus       166 ~~l~~~~f~~l~-~L~~l~l~~N~l~~i~~~~f~~l~~L~  204 (284)
T d1ozna_         166 SSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (284)
T ss_dssp             CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccchhhhcccc-ccchhhhhhccccccChhHhhhhhhcc
Confidence            977788888888 999999999999999999999888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=2.4e-19  Score=126.02  Aligned_cols=179  Identities=21%  Similarity=0.309  Sum_probs=142.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|+.|++.+|++. .+ ..+..+++|++|++++|.+++..+  +..+++++.++++++.++ .++ .+. .+++|+.+.+
T Consensus        42 ~L~~L~l~~~~i~-~l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~-~l~~L~~l~l  114 (227)
T d1h6ua2          42 GITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTLDL  114 (227)
T ss_dssp             TCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEEEC
T ss_pred             CcCEEECCCCCCC-cc-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccc-cccccccccc
Confidence            4789999999987 44 458899999999999999886543  778899999999999876 444 344 7899999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      .++... . ...+...+.+..+.++++.+...  ..+..+++|+.|++++|.+...+       .+.++++|++|++++|
T Consensus       115 ~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         115 TSTQIT-D-VTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT-------PLANLSKLTTLKADDN  183 (227)
T ss_dssp             TTSCCC-C-CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             cccccc-c-cchhccccchhhhhchhhhhchh--hhhccccccccccccccccccch-------hhcccccceecccCCC
Confidence            988765 2 34466778899999988877643  34778899999999999887663       4788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ++++ ++ .+..++ +|++|++++|++++. + .+.+++.|+
T Consensus       184 ~l~~-l~-~l~~l~-~L~~L~Ls~N~lt~i-~-~l~~l~~L~  220 (227)
T d1h6ua2         184 KISD-IS-PLASLP-NLIEVHLKNNQISDV-S-PLANTSNLF  220 (227)
T ss_dssp             CCCC-CG-GGGGCT-TCCEEECTTSCCCBC-G-GGTTCTTCC
T ss_pred             ccCC-Ch-hhcCCC-CCCEEECcCCcCCCC-c-ccccCCCCC
Confidence            9884 33 477787 999999999999854 3 277777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=4.8e-19  Score=122.95  Aligned_cols=159  Identities=23%  Similarity=0.343  Sum_probs=80.6

Q ss_pred             CCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEE
Q 047496           23 LRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLL  102 (204)
Q Consensus        23 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  102 (204)
                      +.++++|++++|.++...  .+..+++|++|++++|.++ .+++ +. .+++|++|++.+|.++ .++ .+..+++|+.+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVK-DLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CGG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc-cc-cCcccccccccccccc-ccc-ccccccccccc
Confidence            345555666655555332  1444555666666665554 2332 22 4555666666555554 222 34555556666


Q ss_pred             eccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEe
Q 047496          103 KLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLI  182 (204)
Q Consensus       103 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l  182 (204)
                      ++.++.+...  ..+..++.++.+++++|.+.+.+       .+..+++|+++++++|.+++ ++ .+..++ +|+.|++
T Consensus       118 ~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~~-------~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~-~L~~L~L  185 (210)
T d1h6ta2         118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT-------VLSRLTKLDTLSLEDNQISD-IV-PLAGLT-KLQNLYL  185 (210)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCC-CG-GGTTCT-TCCEEEC
T ss_pred             cccccccccc--ccccccccccccccccccccccc-------cccccccccccccccccccc-cc-cccCCC-CCCEEEC
Confidence            6655554421  23555555566666555554432       23445556666666665552 22 244454 5666666


Q ss_pred             eccccccccchhhhhhhhhc
Q 047496          183 TNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       183 ~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ++|.+++ +| .|..++.|+
T Consensus       186 s~N~i~~-l~-~l~~l~~L~  203 (210)
T d1h6ta2         186 SKNHISD-LR-ALAGLKNLD  203 (210)
T ss_dssp             CSSCCCB-CG-GGTTCTTCS
T ss_pred             CCCCCCC-Ch-hhcCCCCCC
Confidence            6665552 33 355554443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=7e-19  Score=128.76  Aligned_cols=186  Identities=22%  Similarity=0.263  Sum_probs=144.7

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCC---------------------------------------
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVS---------------------------------------   41 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------------------------------   41 (204)
                      +|++|++++|.+....|..|..++.|++|++++|+++....                                       
T Consensus        56 ~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~  135 (305)
T d1xkua_          56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP  135 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccccccc
Confidence            47889999998886667788889999999998876543211                                       


Q ss_pred             --------ccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccc
Q 047496           42 --------APIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLI  113 (204)
Q Consensus        42 --------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  113 (204)
                              ..+..+++|+.++++++.+. .++..   .++++++|++.++......+..+..++.++.|++++|.+.+..
T Consensus       136 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~  211 (305)
T d1xkua_         136 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD  211 (305)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccCCCccccccccccCccccccCCcc-ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc
Confidence                    11223456777777777765 55554   3578999999999988777888999999999999999999877


Q ss_pred             cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccc------cccccCccEEEeecccc
Q 047496          114 PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSI------GNLSMSLETLLITNCSI  187 (204)
Q Consensus       114 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~------~~~~~~L~~L~l~~n~~  187 (204)
                      +..+..+++|+.|++++|.+..+|      .++..+++|++|++++|+++......|      .... +|+.|++++|++
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~~lp------~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~-~L~~L~L~~N~~  284 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLVKVP------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA-SYSGVSLFSNPV  284 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSCC------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC-CCSEEECCSSSS
T ss_pred             cccccccccceeeecccccccccc------cccccccCCCEEECCCCccCccChhhccCcchhcccC-CCCEEECCCCcC
Confidence            888999999999999999998886      568889999999999999985433333      2334 899999999987


Q ss_pred             c--cccchhhhh
Q 047496          188 S--GNIPQAIST  197 (204)
Q Consensus       188 ~--~~~~~~~~~  197 (204)
                      .  ...|.+|.-
T Consensus       285 ~~~~~~~~~f~~  296 (305)
T d1xkua_         285 QYWEIQPSTFRC  296 (305)
T ss_dssp             CGGGSCGGGGTT
T ss_pred             ccCcCCHhHhcc
Confidence            5  344555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.3e-18  Score=119.74  Aligned_cols=161  Identities=23%  Similarity=0.359  Sum_probs=131.1

Q ss_pred             cCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCC
Q 047496           21 ANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLT  100 (204)
Q Consensus        21 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  100 (204)
                      ..+.++++|++++++++..  ..+..+++|++|++++|.++ .+++ +. .+++|++|++.+|.+. ..+ .+..+++|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIA-DIT-PLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCC-CCG-GGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc-cc-CCcccccccccccccc-ccc-ccccccccc
Confidence            4578999999999998854  23677899999999999987 4443 44 8999999999999886 443 478899999


Q ss_pred             EEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEE
Q 047496          101 LLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETL  180 (204)
Q Consensus       101 ~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L  180 (204)
                      +++++++.....  ..+..+++|+.+++++|.+...+       .+..+++++++++.+|.+++.  ..+..++ +|++|
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-------~l~~~~~L~~L~l~~n~l~~l--~~l~~l~-~L~~L  177 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS-------ALSGLTSLQQLNFSSNQVTDL--KPLANLT-TLERL  177 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-------GGTTCTTCSEEECCSSCCCCC--GGGTTCT-TCCEE
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcccc-------cccccccccccccccccccCC--ccccCCC-CCCEE
Confidence            999999887743  45788999999999999887663       577889999999999999853  3477887 99999


Q ss_pred             Eeeccccccccchhhhhhhhhc
Q 047496          181 LITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       181 ~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      ++++|++++ ++ .++.++.|+
T Consensus       178 ~ls~N~i~~-i~-~l~~L~~L~  197 (199)
T d2omxa2         178 DISSNKVSD-IS-VLAKLTNLE  197 (199)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCS
T ss_pred             ECCCCCCCC-Cc-cccCCCCCC
Confidence            999999985 33 578887776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.1e-18  Score=120.10  Aligned_cols=159  Identities=23%  Similarity=0.382  Sum_probs=131.6

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|+++++.+.. + +.+..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++. +. .++.|+.+++
T Consensus        41 ~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~-l~-~l~~L~~L~l  113 (199)
T d2omxa2          41 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGLTL  113 (199)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCSEEEC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-cccc-cc-cccccccccc
Confidence            47899999999873 3 357889999999999999987543  789999999999999876 4443 44 7999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      .++... . ...+..+++|+.+++++|.+...  ..+..+++++.|++.+|.+++++       .++++++|++|++++|
T Consensus       114 ~~~~~~-~-~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~-------~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         114 FNNQIT-D-IDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK-------PLANLTTLERLDISSN  182 (199)
T ss_dssp             CSSCCC-C-CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             cccccc-c-ccccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc-------cccCCCCCCEEECCCC
Confidence            998876 3 34578899999999999988743  45889999999999999998874       4788999999999999


Q ss_pred             cCCCCCCccccccccCccEE
Q 047496          161 PLDGFLPSSIGNLSMSLETL  180 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L  180 (204)
                      ++++ ++ .+..++ +|+.|
T Consensus       183 ~i~~-i~-~l~~L~-~L~~L  199 (199)
T d2omxa2         183 KVSD-IS-VLAKLT-NLESL  199 (199)
T ss_dssp             CCCC-CG-GGGGCT-TCSEE
T ss_pred             CCCC-Cc-cccCCC-CCCcC
Confidence            9984 33 577777 88765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.9e-18  Score=119.87  Aligned_cols=163  Identities=25%  Similarity=0.360  Sum_probs=136.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      ++++|++++|.+.. ++ .+..+++|++|++++|.+++..  .+..+++|++|++++|.++ .++ .+. .+++|+.+++
T Consensus        47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l  119 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLK-DLKKLKSLSL  119 (210)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGT-TCTTCCEEEC
T ss_pred             CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-ccc-cccccccccc
Confidence            47889999999874 33 4788999999999999998754  3678999999999999987 555 344 7999999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      .++.+. . ...+..++++++++++++.+++  +..+..+++|+.+++++|++.+++       .+.++++|++|++++|
T Consensus       120 ~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~-------~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         120 EHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG-------GGTTCTTCCEEECCSS
T ss_pred             cccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccccc-------cccCCCCCCEEECCCC
Confidence            999876 3 3458889999999999998874  345778999999999999998764       4788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeec
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITN  184 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~  184 (204)
                      .++ .++ .+..++ +|++|++++
T Consensus       189 ~i~-~l~-~l~~l~-~L~~L~Ls~  209 (210)
T d1h6ta2         189 HIS-DLR-ALAGLK-NLDVLELFS  209 (210)
T ss_dssp             CCC-BCG-GGTTCT-TCSEEEEEE
T ss_pred             CCC-CCh-hhcCCC-CCCEEEccC
Confidence            998 444 688888 999999975

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.8e-19  Score=124.11  Aligned_cols=194  Identities=16%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCcccccc-CCccccCCCccceeeecC-CcceeecCCccCCCCCCccEEE
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGV-VSAPIFNMSTLKIIILIN-NSLFGSLPSRIGLSLPTVEHLN   79 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~   79 (204)
                      +++|++++|.+....+..|.++++|++|++++|.+... .+..|..++.++++.+.. +.+. ..+...+..+++|++++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCEEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccccc
Confidence            56677777766633344566677777777777766543 344566666777766654 3343 44444444667777777


Q ss_pred             cCCCcCccCCCc-cccCCCCCCEEeccCCcccccccccccCC-CCCcEEEccCccCCCCcccchhhhccccCCCccEEE-
Q 047496           80 LELNRFSGTIPS-SITNASKLTLLKLGGNTFSGLIPDTIGNL-RNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLN-  156 (204)
Q Consensus        80 l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~-  156 (204)
                      +.++.+....+. .+..+..+..+...++.+....+..+..+ ..+..+++++|++..++.      .....+++.++. 
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~------~~~~~~~l~~~~~  183 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN------CAFNGTQLDELNL  183 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT------TTTTTCCEEEEEC
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc------ccccchhhhcccc
Confidence            777666522111 12223344444445555544444445444 367778888888876653      222345565554 


Q ss_pred             eeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhhhhcc
Q 047496          157 LIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQN  203 (204)
Q Consensus       157 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~~  203 (204)
                      +.+|.++...+..|.+++ +|++|++++|+++...+..|.+++.|+.
T Consensus       184 l~~n~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         184 SDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             TTCTTCCCCCTTTTTTSC-CCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ccccccccccHHHhcCCC-CCCEEECCCCcCCccCHHHHcCCccccc
Confidence            566778743344567777 9999999999999766777888887763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.9e-17  Score=124.33  Aligned_cols=178  Identities=26%  Similarity=0.415  Sum_probs=136.2

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++.+++++|.+.+..+  +..+++|+++++++|.++..  ..+..+++|+.++++++.++ .+++ +. .+++|++++++
T Consensus       199 ~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-~~-~~~~L~~L~l~  271 (384)
T d2omza2         199 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS-NLAP-LS-GLTKLTELKLG  271 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCSEEECC
T ss_pred             cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccC-CCCc-cc-ccccCCEeecc
Confidence            4677788887764333  45678888999988887753  34667888999999988876 3333 33 67889999998


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCc
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      ++.+. ..+ .+..+..++.+.+..+.+.+.  ..+..+++++.+++++|.+.+.+       .+..+++|++|++++|.
T Consensus       272 ~~~l~-~~~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~-------~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         272 ANQIS-NIS-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS-------PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             SSCCC-CCG-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG-------GGGGCTTCCEEECCSSC
T ss_pred             CcccC-CCC-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc-------ccccCCCCCEEECCCCC
Confidence            88876 333 367778888888888887743  45788899999999999988764       47788999999999999


Q ss_pred             CCCCCCccccccccCccEEEeeccccccccchhhhhhhhhc
Q 047496          162 LDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       162 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      +++ ++ .+..++ +|++|++++|++++..|  +.++++|+
T Consensus       341 l~~-l~-~l~~l~-~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         341 VSD-VS-SLANLT-NINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             CCC-CG-GGGGCT-TCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             CCC-Ch-hHcCCC-CCCEEECCCCcCCCChh--hccCCCCC
Confidence            884 33 688887 99999999999986544  77777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-17  Score=124.30  Aligned_cols=164  Identities=26%  Similarity=0.349  Sum_probs=137.1

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+..  ++.+..+++|+.+++++|.+++..+  +..+++|++++++++.+. .+++ +. .++.++.+.+
T Consensus       220 ~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~-~~~~-~~-~~~~l~~l~~  292 (384)
T d2omza2         220 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LA-GLTALTNLEL  292 (384)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GT-TCTTCSEEEC
T ss_pred             CCCEEECCCCCCCC--cchhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccC-CCCc-cc-cccccccccc
Confidence            47889999998873  3468889999999999999886543  678899999999999986 4443 33 6889999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ..+.+. . ...+..++++++++++++.+++..  .+..+++|+.|++++|.++.++       .++++++|++|++++|
T Consensus       293 ~~n~l~-~-~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-------~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         293 NENQLE-D-ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-------SLANLTNINWLSAGHN  361 (384)
T ss_dssp             CSSCCS-C-CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-------GGGGCTTCCEEECCSS
T ss_pred             cccccc-c-ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-------hHcCCCCCCEEECCCC
Confidence            999886 3 345788999999999999998653  4888999999999999998764       5788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeecc
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITNC  185 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~n  185 (204)
                      ++++..|  +..++ +|+.|++++|
T Consensus       362 ~l~~l~~--l~~l~-~L~~L~L~~N  383 (384)
T d2omza2         362 QISDLTP--LANLT-RITQLGLNDQ  383 (384)
T ss_dssp             CCCBCGG--GTTCT-TCSEEECCCE
T ss_pred             cCCCChh--hccCC-CCCEeeCCCC
Confidence            9995433  77787 9999999987

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.8e-18  Score=118.43  Aligned_cols=130  Identities=22%  Similarity=0.219  Sum_probs=87.6

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccc-cCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVG-VVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLE   81 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~   81 (204)
                      ++++.+++++. .+|..+.  +++++|++++|.++. ..+..|..+++|+.|++++|.+. .++...+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeec
Confidence            35566666666 5555443  567777777777764 34555667777777777777776 4444444467777777777


Q ss_pred             CCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCC
Q 047496           82 LNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSS  136 (204)
Q Consensus        82 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  136 (204)
                      +|.+....+..|..+++|++|++++|.++...+.+|..+++|+.+++++|.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence            7777744555677777777777777777766666677777777777777766544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=4.4e-18  Score=116.42  Aligned_cols=163  Identities=20%  Similarity=0.221  Sum_probs=129.2

Q ss_pred             CcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEecc
Q 047496           26 LEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLG  105 (204)
Q Consensus        26 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  105 (204)
                      .+.++.++++++.+ |..+  .+++++|++++|.++..++...+..+++|++|++.+|.+....+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~i-P~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEI-PRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCcc-CCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46899999998855 4333  25899999999999756767766689999999999999987777888999999999999


Q ss_pred             CCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeecc
Q 047496          106 GNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNC  185 (204)
Q Consensus       106 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n  185 (204)
                      +|.+....+.+|..+++|+.|++++|.++.+++     .++..+++|+++++++|.+........  +...++.+.+..+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-----~~f~~l~~L~~l~L~~N~~~~~~~~~~--~~~~l~~~~l~~~  159 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNCNCHLAW--FAEWLRKKSLNGG  159 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-----TSSTTCTTCCEEECTTCCBCCSGGGHH--HHHHHHHHCCSGG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCH-----HHhcCCcccccccccccccccccchHH--HhhhhhhhcccCC
Confidence            999998878889999999999999999998865     578899999999999999864322111  1113455566667


Q ss_pred             ccccccchhhhhh
Q 047496          186 SISGNIPQAISTK  198 (204)
Q Consensus       186 ~~~~~~~~~~~~l  198 (204)
                      .++...|..+.++
T Consensus       160 ~~~c~~p~~l~~~  172 (192)
T d1w8aa_         160 AARCGAPSKVRDV  172 (192)
T ss_dssp             GCBBCSSTTTTTS
T ss_pred             CeEeCCChhhcCC
Confidence            7766666665543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.8e-16  Score=111.09  Aligned_cols=163  Identities=25%  Similarity=0.367  Sum_probs=132.2

Q ss_pred             CcceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEc
Q 047496            1 MLKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNL   80 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l   80 (204)
                      +|++|++++|.+.+..  .+..+++++.+++++|.++..  ..+.++++|+.+.++++... ..+ .+. ..+.++.+.+
T Consensus        64 ~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~-~~~-~~~-~~~~~~~l~~  136 (227)
T d1h6ua2          64 NLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT-DVT-PLA-GLSNLQVLYL  136 (227)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEEC
T ss_pred             CCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccccccccccc-ccc-hhc-cccchhhhhc
Confidence            5899999999987433  388999999999999988754  34778999999999999875 222 233 6788999999


Q ss_pred             CCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCC
Q 047496           81 ELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGN  160 (204)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n  160 (204)
                      ..+.+..  ...+..+++++++++++|.+...  ..++.+++|+.|++++|.+.+++       .++++++|++|++++|
T Consensus       137 ~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~-------~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         137 DLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS-------PLASLPNLIEVHLKNN  205 (227)
T ss_dssp             CSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-------GGGGCTTCCEEECTTS
T ss_pred             hhhhhch--hhhhccccccccccccccccccc--hhhcccccceecccCCCccCCCh-------hhcCCCCCCEEECcCC
Confidence            8888762  23477889999999999988744  34889999999999999998774       4788999999999999


Q ss_pred             cCCCCCCccccccccCccEEEeec
Q 047496          161 PLDGFLPSSIGNLSMSLETLLITN  184 (204)
Q Consensus       161 ~~~~~~~~~~~~~~~~L~~L~l~~  184 (204)
                      ++++ ++ .+..++ +|+.|++++
T Consensus       206 ~lt~-i~-~l~~l~-~L~~L~lsn  226 (227)
T d1h6ua2         206 QISD-VS-PLANTS-NLFIVTLTN  226 (227)
T ss_dssp             CCCB-CG-GGTTCT-TCCEEEEEE
T ss_pred             cCCC-Cc-ccccCC-CCCEEEeeC
Confidence            9984 43 367777 999999975

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.8e-18  Score=124.35  Aligned_cols=195  Identities=16%  Similarity=0.160  Sum_probs=130.7

Q ss_pred             CcceEEccCCccccc-cChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCc-ceeecCCccCCCCCCccEE
Q 047496            1 MLKGIYLGYNKLHGE-IPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-LFGSLPSRIGLSLPTVEHL   78 (204)
Q Consensus         1 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L   78 (204)
                      +|++|++++|.+... +...+..+++|++|++++|.+.+..+..+..+++|++|++++|. +++..-..+...+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            478899999887644 34456788999999999998877666777788899999999864 4322112233367889999


Q ss_pred             EcCCCc-CccC-CCccccC-CCCCCEEeccCCc--cccc-ccccccCCCCCcEEEccCcc-CCCCcccchhhhccccCCC
Q 047496           79 NLELNR-FSGT-IPSSITN-ASKLTLLKLGGNT--FSGL-IPDTIGNLRNLEWLGLAYNN-LTSSTSKLSFLSSLANCKK  151 (204)
Q Consensus        79 ~l~~~~-~~~~-~~~~~~~-~~~L~~l~l~~~~--~~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~  151 (204)
                      ++++|. ++.. ....+.. .++|+.++++++.  ++.. .......+++|+.|++++|. +++.     ....+..+++
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-----~~~~l~~~~~  201 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-----CFQEFFQLNY  201 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-----GGGGGGGCTT
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch-----hhhhhcccCc
Confidence            998864 3311 1122223 4678999988763  3322 22334568899999998875 3332     2256777889


Q ss_pred             ccEEEeeCC-cCCCCCCccccccccCccEEEeecccccc-ccchhhhhhhhhc
Q 047496          152 LRSLNLIGN-PLDGFLPSSIGNLSMSLETLLITNCSISG-NIPQAISTKYLFQ  202 (204)
Q Consensus       152 L~~l~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~l~  202 (204)
                      |++|++++| .+++.....+...+ +|+.|++++| ++. .++.....+|.|+
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~-~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             CCEEECCCCCCCChHHHHHHhcCC-CCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            999999986 57766666777777 8999999887 333 2233234455554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4e-16  Score=110.23  Aligned_cols=190  Identities=17%  Similarity=0.155  Sum_probs=138.2

Q ss_pred             ceEEccCCccccccChhccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCC
Q 047496            3 KGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLEL   82 (204)
Q Consensus         3 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~   82 (204)
                      +.++.++.+++ .+|..+.  +++++|++++|.++...+..|.++++|++|++++|.+...++...+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            35566666666 6666543  58999999999999877778999999999999999987667776666889999998764


Q ss_pred             -CcCccCCCccccCCCCCCEEeccCCcccccccc-cccCCCCCcEEEccCccCCCCcccchhhhccccCC-CccEEEeeC
Q 047496           83 -NRFSGTIPSSITNASKLTLLKLGGNTFSGLIPD-TIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCK-KLRSLNLIG  159 (204)
Q Consensus        83 -~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~  159 (204)
                       +.+....+..+..+++|+++++.++.+....+. .+..+..+..+...++.+..++.     ..+.+++ .+..+++.+
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~-----~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-----NSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT-----TSSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc-----cccccccccceeeeccc
Confidence             566656677789999999999999988743222 23345556666666666665543     3455544 789999999


Q ss_pred             CcCCCCCCccccccccCccEE-Eeeccccccccchhhhhhhhhc
Q 047496          160 NPLDGFLPSSIGNLSMSLETL-LITNCSISGNIPQAISTKYLFQ  202 (204)
Q Consensus       160 n~~~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~~~~~~l~~l~  202 (204)
                      |.++. ++....... ++..+ ++++|.++...++.|.+++.|+
T Consensus       163 n~l~~-i~~~~~~~~-~l~~~~~l~~n~l~~l~~~~f~~l~~L~  204 (242)
T d1xwdc1         163 NGIQE-IHNCAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPV  204 (242)
T ss_dssp             SCCCE-ECTTTTTTC-CEEEEECTTCTTCCCCCTTTTTTSCCCS
T ss_pred             ccccc-cccccccch-hhhccccccccccccccHHHhcCCCCCC
Confidence            99984 444444455 55555 5677788866566788887765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.7e-16  Score=105.38  Aligned_cols=126  Identities=19%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             CCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcE
Q 047496           46 NMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEW  125 (204)
Q Consensus        46 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~  125 (204)
                      +..++++|++++|.++ .++. ++..+++|+.|++++|.+. .+ +.+..+++|++|++++|.++...+..+..+++|+.
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3344555555555543 3332 2224455555555555554 22 23455555666666666555433334455666666


Q ss_pred             EEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCc----cccccccCccEEE
Q 047496          126 LGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS----SIGNLSMSLETLL  181 (204)
Q Consensus       126 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~----~~~~~~~~L~~L~  181 (204)
                      |++++|.+...+.    ...++.+++|+++++++|.++. .+.    .+..++ +|++||
T Consensus        92 L~L~~N~i~~~~~----l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp-~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGD----LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP-QVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGG----GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT-TCSEET
T ss_pred             ceecccccccccc----ccccccccccchhhcCCCcccc-ccchHHHHHHHCC-CcCeeC
Confidence            6666666655431    1345556666666666666652 222    234444 666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=104.79  Aligned_cols=133  Identities=19%  Similarity=0.166  Sum_probs=103.9

Q ss_pred             hccCCCCCcEEEccCccccccCCccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCC
Q 047496           19 EIANLRNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASK   98 (204)
Q Consensus        19 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~   98 (204)
                      .+.+...+++|++++|.++.. +..+..+++|+.|++++|.+. .++ .+. .+++|++|++++|.+....+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~-~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFP-LLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCC-CCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-Ccc-cCcchhhhhcccccccCCCccccccccc
Confidence            356778899999999999866 455677899999999999987 554 344 7899999999999998433344567899


Q ss_pred             CCEEeccCCcccccc-cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEe
Q 047496           99 LTLLKLGGNTFSGLI-PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNL  157 (204)
Q Consensus        99 L~~l~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  157 (204)
                      |++|++++|.+.... ...+..+++|+.+++++|++...+.-  ....+..+|+|+.||-
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~--r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY--RLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH--HHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccch--HHHHHHHCCCcCeeCC
Confidence            999999999987432 24678899999999999998776531  1134677899999873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=3e-15  Score=94.78  Aligned_cols=103  Identities=30%  Similarity=0.469  Sum_probs=57.0

Q ss_pred             ceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccC
Q 047496           51 KIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAY  130 (204)
Q Consensus        51 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~  130 (204)
                      |+|++++|.++ .++ .+. .+++|++|++++|.+. .+|..+..+++|++|++++|.++.. + .+..+++|+.+++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~-~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccc-cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            35566666664 333 233 5556666666666665 4555555666666666666665532 2 355566666666666


Q ss_pred             ccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          131 NNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      |.+...+.    ...+..+++|+.+++++|.++
T Consensus        75 N~i~~~~~----~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAA----IQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSST----TGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCC----chhhcCCCCCCEEECCCCcCC
Confidence            66555432    134455556666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.4e-15  Score=95.23  Aligned_cols=101  Identities=24%  Similarity=0.268  Sum_probs=51.3

Q ss_pred             EEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEE
Q 047496           77 HLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLN  156 (204)
Q Consensus        77 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~  156 (204)
                      .|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++..+       .+..+++|++++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-------~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-------GVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-------GGTTCSSCCEEE
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-------ccccccccCeEE
Confidence            4555555554 333 2455555555555555555 23444555555555555555555442       244555555555


Q ss_pred             eeCCcCCCCC-CccccccccCccEEEeeccccc
Q 047496          157 LIGNPLDGFL-PSSIGNLSMSLETLLITNCSIS  188 (204)
Q Consensus       157 l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~  188 (204)
                      +++|.+.+.. ...+..++ +|+.+++++|+++
T Consensus        72 l~~N~i~~~~~~~~l~~~~-~L~~L~l~~N~i~  103 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGG
T ss_pred             CCCCccCCCCCchhhcCCC-CCCEEECCCCcCC
Confidence            5555554221 12344444 5555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.2e-16  Score=113.37  Aligned_cols=175  Identities=17%  Similarity=0.160  Sum_probs=128.6

Q ss_pred             CCCCCcEEEccCccccccC-CccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCC-cCccCC-CccccCCCC
Q 047496           22 NLRNLEALALGMNNLVGVV-SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN-RFSGTI-PSSITNASK   98 (204)
Q Consensus        22 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~~   98 (204)
                      ....|++|+++++.+.+.. ...+..+++|++|+++++.+.+..+..+. .+++|++|++.+| .++... ......+++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHh
Confidence            4568999999999887543 34467789999999999988766666666 6899999999986 454221 222356789


Q ss_pred             CCEEeccCCc-cccc-cccccc-CCCCCcEEEccCcc--CCCCcccchhhhccccCCCccEEEeeCCc-CCCCCCccccc
Q 047496           99 LTLLKLGGNT-FSGL-IPDTIG-NLRNLEWLGLAYNN--LTSSTSKLSFLSSLANCKKLRSLNLIGNP-LDGFLPSSIGN  172 (204)
Q Consensus        99 L~~l~l~~~~-~~~~-~~~~l~-~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~  172 (204)
                      |++|++++|. +++. ....+. ..+.|+.|+++++.  +++..    +.....++++|++|++++|. +++.....+..
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~----l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD----LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH----HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             ccccccccccccccccchhhhcccccccchhhhccccccccccc----ccccccccccccccccccccCCCchhhhhhcc
Confidence            9999999874 3322 122333 35789999998763  32221    22345678999999999975 77777788888


Q ss_pred             cccCccEEEeecc-ccccccchhhhhhhhhc
Q 047496          173 LSMSLETLLITNC-SISGNIPQAISTKYLFQ  202 (204)
Q Consensus       173 ~~~~L~~L~l~~n-~~~~~~~~~~~~l~~l~  202 (204)
                      ++ +|++|++++| .+++.....+++++.|+
T Consensus       199 ~~-~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         199 LN-YLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             CT-TCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cC-cCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            87 9999999997 78888888888888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.48  E-value=1.7e-12  Score=95.65  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=44.0

Q ss_pred             cceEEccCCccccccChhccCCCCCcEEEccCccccccCCcccc----------------CC-CccceeeecCCcceeec
Q 047496            2 LKGIYLGYNKLHGEIPHEIANLRNLEALALGMNNLVGVVSAPIF----------------NM-STLKIIILINNSLFGSL   64 (204)
Q Consensus         2 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------------~l-~~L~~L~l~~~~~~~~~   64 (204)
                      +++|++++++++ .+|+.   .++|++|++++|.++.. |..+.                .+ +.|++|++++|.+. .+
T Consensus        40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~l-p~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~l  113 (353)
T d1jl5a_          40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KL  113 (353)
T ss_dssp             CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SC
T ss_pred             CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccc-ccchhhhhhhhhhhcccchhhhhccccccccccccccc-cc
Confidence            567788877776 45542   35677777777777643 32221                11 23556666666554 44


Q ss_pred             CCccCCCCCCccEEEcCCCcCc
Q 047496           65 PSRIGLSLPTVEHLNLELNRFS   86 (204)
Q Consensus        65 ~~~~~~~~~~L~~L~l~~~~~~   86 (204)
                      |. .. .++.|+++++.++.+.
T Consensus       114 p~-~~-~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         114 PE-LQ-NSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CC-CT-TCTTCCEEECCSSCCS
T ss_pred             cc-hh-hhccceeecccccccc
Confidence            43 22 4666777776665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.9e-13  Score=87.41  Aligned_cols=107  Identities=18%  Similarity=0.200  Sum_probs=65.3

Q ss_pred             ccceeeecCCcceeecCCccCCCCCCccEEEcCCC-cCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEE
Q 047496           49 TLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELN-RFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLG  127 (204)
Q Consensus        49 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~  127 (204)
                      ..+.++.+++.+. ..|..+. .++++++|++.++ .++...+..|..+++|+.|++++|.++...+.+|..+++|+.|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~-~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCccccc-CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3445666666654 4555554 5666777777544 35533345566677777777777777665566677777777777


Q ss_pred             ccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          128 LAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      +++|.+..++.     ..+.. .+|++|++++|.+.
T Consensus        87 Ls~N~l~~l~~-----~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSW-----KTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCS-----TTTCS-CCCCEEECCSSCCC
T ss_pred             ccCCCCcccCh-----hhhcc-ccccccccCCCccc
Confidence            77777766653     22332 34667777777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=8.8e-16  Score=105.15  Aligned_cols=111  Identities=26%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             cccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCC
Q 047496           43 PIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRN  122 (204)
Q Consensus        43 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~  122 (204)
                      .+..+++|+.|++++|.+. .++ .+. .+++|+.|++++|.+. .++.....+++|++|++++|.++..  ..+..+++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~l~-~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-CHH-HHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             HHhcccccceeECcccCCC-Ccc-ccc-CCccccChhhcccccc-ccccccccccccccccccccccccc--cccccccc
Confidence            3455556666666666554 332 232 4556666666666655 3443333344566666666666532  23555666


Q ss_pred             CcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCC
Q 047496          123 LEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLD  163 (204)
Q Consensus       123 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  163 (204)
                      |+.|++++|.+..++.    ...++.+++|++|++++|++.
T Consensus       117 L~~L~L~~N~i~~~~~----~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGE----IDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHH----HHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccc----cccccCCCccceeecCCCccc
Confidence            6666666666655431    134566666666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=1.8e-14  Score=106.80  Aligned_cols=115  Identities=18%  Similarity=0.224  Sum_probs=50.8

Q ss_pred             CCCccEEEcCCCcCccC-----CCccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCccCCCCcccchh
Q 047496           72 LPTVEHLNLELNRFSGT-----IPSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSF  142 (204)
Q Consensus        72 ~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  142 (204)
                      .+.++++++.+|.+...     +...+...++|++|++++|.++..    +...+..+++|+.|++++|.+.+... ..+
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~-~~l  263 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA-AAV  263 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-HHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh-HHH
Confidence            34455555555554321     122334445555555555554322    12334455555555555555543211 011


Q ss_pred             hhcccc--CCCccEEEeeCCcCCCCCCcccc-----ccccCccEEEeeccccc
Q 047496          143 LSSLAN--CKKLRSLNLIGNPLDGFLPSSIG-----NLSMSLETLLITNCSIS  188 (204)
Q Consensus       143 ~~~~~~--~~~L~~l~l~~n~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~  188 (204)
                      ...+..  .+.|++|++++|.++......+.     ..+ +|++|++++|.+.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~-~L~~L~l~~N~~~  315 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT-TCCEEECTTSBSC
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC-CCCEEECCCCcCC
Confidence            122222  23455566665555432222221     122 5566666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=1.2e-15  Score=104.42  Aligned_cols=118  Identities=24%  Similarity=0.380  Sum_probs=94.1

Q ss_pred             cCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEEeccCCcccccccccccCCCCCcEEEccCccCCCCcccchhh
Q 047496           64 LPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLLKLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLTSSTSKLSFL  143 (204)
Q Consensus        64 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  143 (204)
                      ++..+. .+++|++|++++|.+. .++ .+..+++|++|++++|.+.. ++.....+++|+.|++++|.++.++      
T Consensus        40 l~~sl~-~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l~------  109 (198)
T d1m9la_          40 MDATLS-TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS------  109 (198)
T ss_dssp             CHHHHH-HTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCHH------
T ss_pred             hhhHHh-cccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-ccccccccccccccccccccccccc------
Confidence            334444 6899999999999998 554 58899999999999999884 4554555678999999999998763      


Q ss_pred             hccccCCCccEEEeeCCcCCCCC-CccccccccCccEEEeeccccccccch
Q 047496          144 SSLANCKKLRSLNLIGNPLDGFL-PSSIGNLSMSLETLLITNCSISGNIPQ  193 (204)
Q Consensus       144 ~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~  193 (204)
                       .+..+++|+.|++++|.++... ...+..++ +|+.|++++|+++...+.
T Consensus       110 -~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             -HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSSHHHHHHCT
T ss_pred             -cccccccccccccccchhccccccccccCCC-ccceeecCCCccccCccc
Confidence             4677889999999999998432 24577787 999999999998865443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=1.6e-14  Score=106.95  Aligned_cols=102  Identities=19%  Similarity=0.197  Sum_probs=67.1

Q ss_pred             cCCCCCCEEeccCCccccc-----ccccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCc
Q 047496           94 TNASKLTLLKLGGNTFSGL-----IPDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPS  168 (204)
Q Consensus        94 ~~~~~L~~l~l~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  168 (204)
                      ...+.++++++++|.+...     ....+...++|+.|++++|.+.... ...+...+..+++|++|++++|.+++....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g-~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc-cccccccccccccchhhhhhcCccCchhhH
Confidence            4456788888888877532     2234667788888888888765432 112345677888899999999988754333


Q ss_pred             cc----cccc-cCccEEEeeccccccccchhhh
Q 047496          169 SI----GNLS-MSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       169 ~~----~~~~-~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      .+    .... ..|++|++++|.++......+.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~  294 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  294 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence            33    2211 2688999999988765444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-12  Score=84.55  Aligned_cols=108  Identities=19%  Similarity=0.119  Sum_probs=69.1

Q ss_pred             CCCcEEEccCccccccCCccccCCCccceeeecCCc-ceeecCCccCCCCCCccEEEcCCCcCccCCCccccCCCCCCEE
Q 047496           24 RNLEALALGMNNLVGVVSAPIFNMSTLKIIILINNS-LFGSLPSRIGLSLPTVEHLNLELNRFSGTIPSSITNASKLTLL  102 (204)
Q Consensus        24 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  102 (204)
                      ...+.++.+++.+... |..+..+++|++|++.++. ++ .++...+..+++|+.|++.+|.+....+..|..+++|++|
T Consensus         8 ~~~~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           8 HGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSSCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCeEEecCCCCccC-cccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            3445566666665533 4445566777777776554 54 5665555567777777777777774455667777777777


Q ss_pred             eccCCcccccccccccCCCCCcEEEccCccCC
Q 047496          103 KLGGNTFSGLIPDTIGNLRNLEWLGLAYNNLT  134 (204)
Q Consensus       103 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  134 (204)
                      ++++|.++...+..+. ...|+.|++++|.+.
T Consensus        86 ~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             eccCCCCcccChhhhc-cccccccccCCCccc
Confidence            7777777744333443 335777787777663

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.34  E-value=6.5e-11  Score=87.06  Aligned_cols=68  Identities=19%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             CCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCccccccccCccEEEeeccccccccchhhhhhh
Q 047496          120 LRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSSIGNLSMSLETLLITNCSISGNIPQAISTKY  199 (204)
Q Consensus       120 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  199 (204)
                      +++|++|++++|.+..+|.         .+++|+.|++++|.++ .+|..   .. +|++|++++|+++ .+|+....+.
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~---------~~~~L~~L~L~~N~L~-~l~~~---~~-~L~~L~L~~N~L~-~lp~~~~~L~  347 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA---------LPPRLERLIASFNHLA-EVPEL---PQ-NLKQLHVEYNPLR-EFPDIPESVE  347 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCS-CCCCC---CT-TCCEEECCSSCCS-SCCCCCTTCC
T ss_pred             CCCCCEEECCCCccCcccc---------ccCCCCEEECCCCcCC-ccccc---cC-CCCEEECcCCcCC-CCCccccccC
Confidence            4678999999998887752         2567889999999887 55532   23 8999999999987 5666555555


Q ss_pred             hhc
Q 047496          200 LFQ  202 (204)
Q Consensus       200 ~l~  202 (204)
                      .|+
T Consensus       348 ~L~  350 (353)
T d1jl5a_         348 DLR  350 (353)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8e-13  Score=100.67  Aligned_cols=197  Identities=20%  Similarity=0.139  Sum_probs=129.4

Q ss_pred             cceEEccCCccccc-----cChhccCCCCCcEEEccCccccccC----CccccCCCccceeeecCCcceee----cCCcc
Q 047496            2 LKGIYLGYNKLHGE-----IPHEIANLRNLEALALGMNNLVGVV----SAPIFNMSTLKIIILINNSLFGS----LPSRI   68 (204)
Q Consensus         2 L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~   68 (204)
                      ++.+.+.++.+...     ..........++.+++++|.+....    ...+...+.++.++++++.+.+.    +...+
T Consensus       228 ~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l  307 (460)
T d1z7xw1         228 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL  307 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred             ccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence            45666666654321     2223345677888888888765432    22234567888888888877532    12222


Q ss_pred             CCCCCCccEEEcCCCcCccCCCc----cccCCCCCCEEeccCCcccccc----ccccc-CCCCCcEEEccCccCCCCccc
Q 047496           69 GLSLPTVEHLNLELNRFSGTIPS----SITNASKLTLLKLGGNTFSGLI----PDTIG-NLRNLEWLGLAYNNLTSSTSK  139 (204)
Q Consensus        69 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~----~~~l~-~l~~L~~L~l~~~~~~~~~~~  139 (204)
                      ......|+.+++.++.++.....    .+...++|++|++++|.+.+..    +..+. ....|+.|++++|.+++.. .
T Consensus       308 ~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~-~  386 (460)
T d1z7xw1         308 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS-C  386 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH-H
T ss_pred             cccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHH-H
Confidence            33456799999999887644322    2345578999999999886432    23333 4677999999999886542 1


Q ss_pred             chhhhccccCCCccEEEeeCCcCCCCCCccc----cccccCccEEEeeccccccccchhhhhhh
Q 047496          140 LSFLSSLANCKKLRSLNLIGNPLDGFLPSSI----GNLSMSLETLLITNCSISGNIPQAISTKY  199 (204)
Q Consensus       140 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~l~  199 (204)
                      ..+...+..+++|++||+++|.++++....+    ......|+.|++.+|.+.......+..+.
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~  450 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE  450 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHH
Confidence            2234567778999999999999976444333    22233799999999999877777665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6e-11  Score=90.09  Aligned_cols=190  Identities=17%  Similarity=0.134  Sum_probs=122.7

Q ss_pred             eEEccCCccccc----cChhccCCCCCcEEEccCcccccc-----CCccccCCCccceeeecCCcceeec----CCccCC
Q 047496            4 GIYLGYNKLHGE----IPHEIANLRNLEALALGMNNLVGV-----VSAPIFNMSTLKIIILINNSLFGSL----PSRIGL   70 (204)
Q Consensus         4 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~   70 (204)
                      .+++.++.+...    ....+...+.++.+++.++.+...     ..........++.+++++|.+....    ...+. 
T Consensus       202 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~-  280 (460)
T d1z7xw1         202 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-  280 (460)
T ss_dssp             EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-
T ss_pred             ccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccc-
Confidence            455555544321    222344678888999988875432     1222345678999999998765221    12222 


Q ss_pred             CCCCccEEEcCCCcCccCCCcc----c-cCCCCCCEEeccCCcccccccc----cccCCCCCcEEEccCccCCCCcccch
Q 047496           71 SLPTVEHLNLELNRFSGTIPSS----I-TNASKLTLLKLGGNTFSGLIPD----TIGNLRNLEWLGLAYNNLTSSTSKLS  141 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~~~~~----~-~~~~~L~~l~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~  141 (204)
                      ..+.++.++++++.+.......    + .....|+.+.++++.+......    .+...++|++|++++|.+.+.+. ..
T Consensus       281 ~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~-~~  359 (460)
T d1z7xw1         281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV-RE  359 (460)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-HH
T ss_pred             ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCccc-ch
Confidence            4678899999998876322221    1 2345799999999988755433    34456789999999998865321 11


Q ss_pred             hhhccc-cCCCccEEEeeCCcCCCCCC----ccccccccCccEEEeeccccccccchhhh
Q 047496          142 FLSSLA-NCKKLRSLNLIGNPLDGFLP----SSIGNLSMSLETLLITNCSISGNIPQAIS  196 (204)
Q Consensus       142 ~~~~~~-~~~~L~~l~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  196 (204)
                      +...+. ..+.|++|++++|.++++..    ..+...+ +|++|++++|.++......|.
T Consensus       360 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~l~  418 (460)
T d1z7xw1         360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH-SLRELDLSNNCLGDAGILQLV  418 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC-CCCEEECCSSSCCHHHHHHHH
T ss_pred             hhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC-CCCEEECCCCcCCHHHHHHHH
Confidence            233443 46789999999999986433    3344556 899999999999876555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.5e-09  Score=71.25  Aligned_cols=83  Identities=27%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             ccCCCCCCEEeccCCcccccc--cccccCCCCCcEEEccCccCCCCcccchhhhccccCCCccEEEeeCCcCCCCCCcc-
Q 047496           93 ITNASKLTLLKLGGNTFSGLI--PDTIGNLRNLEWLGLAYNNLTSSTSKLSFLSSLANCKKLRSLNLIGNPLDGFLPSS-  169 (204)
Q Consensus        93 ~~~~~~L~~l~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~-  169 (204)
                      ...+++|++|++++|.++...  +..+..+++|+.|++++|.+.+++..    ..+ ....|+++++++|.+....... 
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l----~~l-~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL----DKI-KGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH----HHH-TTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh----hhh-hccccceeecCCCCcCcCcccch
Confidence            346788888999998887542  34567788899999999988877531    222 3456888889998887543322 


Q ss_pred             ------ccccccCccEEE
Q 047496          170 ------IGNLSMSLETLL  181 (204)
Q Consensus       170 ------~~~~~~~L~~L~  181 (204)
                            +..++ +|+.||
T Consensus       136 ~y~~~i~~~~P-~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFP-KLLRLD  152 (162)
T ss_dssp             HHHHHHHTTST-TCCEET
T ss_pred             hHHHHHHHHCC-CCCEEC
Confidence                  23344 788764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.33  E-value=9.7e-08  Score=62.67  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCCCccEEEcCCC-cCccC----CCccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEccCccCCCCcccch
Q 047496           71 SLPTVEHLNLELN-RFSGT----IPSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLAYNNLTSSTSKLS  141 (204)
Q Consensus        71 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  141 (204)
                      ..+.|++|+++++ .++..    +...+...++|++|++++|.+...    +...+...+.|+.|++++|.+.... ...
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g-~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-LAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-HHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH-HHH
Confidence            3455666666543 33311    223344556667777776666432    2233445567777777777665432 223


Q ss_pred             hhhccccCCCccEEEeeCCcCCCC-------CCccccccccCccEEEeecccc
Q 047496          142 FLSSLANCKKLRSLNLIGNPLDGF-------LPSSIGNLSMSLETLLITNCSI  187 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l~~n~~~~~-------~~~~~~~~~~~L~~L~l~~n~~  187 (204)
                      +..++...+.|++|++++|.+...       +...+...+ +|+.|+++.+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~-sL~~l~l~~~~~  143 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASM  143 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCH
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCC-CccEeeCcCCCc
Confidence            445666677777777777654321       222333444 677777766543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.4e-08  Score=62.94  Aligned_cols=84  Identities=27%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             hccCCCCCcEEEccCccccccC--CccccCCCccceeeecCCcceeecCCccCCCCCCccEEEcCCCcCccCCCc-----
Q 047496           19 EIANLRNLEALALGMNNLVGVV--SAPIFNMSTLKIIILINNSLFGSLPSRIGLSLPTVEHLNLELNRFSGTIPS-----   91 (204)
Q Consensus        19 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----   91 (204)
                      .+..+++|++|++++|+++...  +..+..+++|+.|++++|.+. .+++........|+.+++.+|.+......     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3457899999999999998653  344567899999999999987 55542222456799999999988743322     


Q ss_pred             --cccCCCCCCEEe
Q 047496           92 --SITNASKLTLLK  103 (204)
Q Consensus        92 --~~~~~~~L~~l~  103 (204)
                        .+..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              245678888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.19  E-value=5.5e-07  Score=58.94  Aligned_cols=91  Identities=9%  Similarity=0.112  Sum_probs=56.4

Q ss_pred             CCCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcc--cc
Q 047496           71 SLPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTS--KL  140 (204)
Q Consensus        71 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~--~~  140 (204)
                      ..+.|++|++++|.+...    +...+...+.|++|++++|.+....    ..++...+.|+.|++++|.+..+..  ..
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            344566666666655422    2233445567778888777776432    2346667788888888876655432  22


Q ss_pred             hhhhccccCCCccEEEeeCCc
Q 047496          141 SFLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus       141 ~~~~~~~~~~~L~~l~l~~n~  161 (204)
                      .+...+...++|++++++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence            355667778888888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.76  E-value=3.1e-06  Score=55.18  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             CCCCccEEEcCC-CcCccC----CCccccCCCCCCEEeccCCcccccc----cccccCCCCCcEEEccCccCCCCcccch
Q 047496           71 SLPTVEHLNLEL-NRFSGT----IPSSITNASKLTLLKLGGNTFSGLI----PDTIGNLRNLEWLGLAYNNLTSSTSKLS  141 (204)
Q Consensus        71 ~~~~L~~L~l~~-~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~  141 (204)
                      ..++|++|++.+ +.++..    +...+...++|++|++++|.+....    ...+...+.++.+++++|.+.+.. ...
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g-~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-ILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-HHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh-HHH
Confidence            445666666655 334311    2233445566667777766654332    223445566777777776664432 223


Q ss_pred             hhhccccCCCccEEEee--CCcCCCC----CCccccccccCccEEEeecccc
Q 047496          142 FLSSLANCKKLRSLNLI--GNPLDGF----LPSSIGNLSMSLETLLITNCSI  187 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l~--~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~  187 (204)
                      +..++...+.|+.+++.  +|.+.+.    +...+...+ +|++|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~-~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCC-CcCEEeCcCCCC
Confidence            44566666777765553  4455432    222333444 777777776643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=7.2e-06  Score=53.35  Aligned_cols=89  Identities=13%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             CCCccEEEcCCCcCccC----CCccccCCCCCCEEeccCCccccc----ccccccCCCCCcEEEcc--CccCCCCcccch
Q 047496           72 LPTVEHLNLELNRFSGT----IPSSITNASKLTLLKLGGNTFSGL----IPDTIGNLRNLEWLGLA--YNNLTSSTSKLS  141 (204)
Q Consensus        72 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l~--~~~~~~~~~~~~  141 (204)
                      .+.|++|++++|.++..    +...+...+.++.+++.++.+...    +...+...++|+.+++.  +|.+.+. ....
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~-~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN-VEME  123 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH-HHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH-HHHH
Confidence            44455555555544321    112233445566666666655432    22345556667765554  3334322 1223


Q ss_pred             hhhccccCCCccEEEeeCCc
Q 047496          142 FLSSLANCKKLRSLNLIGNP  161 (204)
Q Consensus       142 ~~~~~~~~~~L~~l~l~~n~  161 (204)
                      +...+..++.|++|++..+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            44556667777777776554