Citrus Sinensis ID: 047498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
Protein Sequence
MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTSALLSFLLAAKKATRLRGFRIEASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAERLINSQAMPTEQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccEEEEcccccEEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEccccccccccccccEEEEEEcccccHHHHccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccccccccccHHHHEEccccccccccccEEEEEEccccccccccHHHHHHHHHHHcHHHHHHHHHHHccccccEEcHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccEEEEccHHccccHHHHHHHHHHHHHHccccccEEEEEEEEccccccEEEEEcccccccccccccEEEEEEcccccHHHccccccEccccccccccccEEEEccccccEcccccccccccccccccHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mtlnlslcspnfisssstprfgkihetssnpnnnTSALLSFLLAAKKATRLRGfrieaslsesengvveEELLSRVSGAKDASEVLEIVAESskrsggvltvdECCLIINAAIDRGNTDLALSIFYAMRSSfdqglsengtlvdrwkwsrpdvsVYTSLVQSLAASLKVSDALRLIddisrvgvspgeevpfgkvvrcpTCLIAVAVaqpqhgiqivsCAKCrykyelvsgdivsihseeismdiPAWKRGLRFLQIMKQRIPAAVHSIVvqtpsgmarthrfatetvdlpaqvgeritvssaapsnvyrevgpfkfspkalnfypgeplcltnhkdgresqllraptkdrnhsllnpvsLVPLLAVLatgdaasrvidpslpqFLSVAAVASLAVGVtlnnlifpqlsqlpqksvDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENkiyavgepsyraRKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAERLinsqampteqs
Flexible Loop (DISEMBL)
mtlnlslcspnfisssstPRFGKIHETSSNPNNNTSALLSFLLAAKKATRLRGFRIeaslsesengvveeELLSrvsgakdaSEVLEIVaesskrsggvltVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERItvssaapsnvyreVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLraptkdrnhsllNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENkiyavgepsyrarksrvkrvreglqnslrgrielidSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAErlinsqampteqs
Low Complexity Region (SEG)
MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTsallsfllaakkaTRLRGFRIEASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHsllnpvslvpllavlaTGDAASRVIDPSLPQFlsvaavaslavgvTLNNLIFPQLSQLPQKSVDTIAIRqqllsqydllqsRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARissmieieiemdsdVLaaeavssaesiseqiqqiMELENLEEKWRLQAEANDEAERLINSQAMPTEQS
Disordered region (IsUnstruct)
*************************************LLSFLLAAKKATRLRGFRI*******************************IV******SGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTN*******************SLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYR********V*EGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLA***************************************************
Disordered Region (DISOPRED)
*********P************************************************************ELLSRVSGAKDASEVLEI***************ECCLIINAAIDRGNTDLALSIFYA******************WKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRES*****************VSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKD***AAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSS***I*E*IQQIMELENLEEKWRLQAEANDE***************
Disordered Region (DISEMBL)
MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTSALLSFLLAAKKATRLRGFRIEASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAA**********EQIQQIMELENLEEKWRLQAEANDEAERLINS********
Disordered Region (DISPRO)
*TLNLSLCSPNFIS****************PNNNTSALLSFLLAAKKATRLRGFRIEASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS***********VDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEA*RLI**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTSALLSFLLAAKKATRLRGFRIEASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIxxxxxxxxxxxxxxxxxxxxxAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINSQAMPTEQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
225426324	558	PREDICTED: uncharacterized protein LOC10	0.977	0.991	0.724	0.0
255537809	570	conserved hypothetical protein [Ricinus	0.867	0.861	0.782	0.0
224072206	626	predicted protein [Populus trichocarpa]	0.938	0.848	0.723	0.0
224058249	588	predicted protein [Populus trichocarpa]	0.872	0.840	0.779	0.0
147766222	556	hypothetical protein VITISV_007803 [Viti	0.945	0.962	0.671	0.0
356527678	573	PREDICTED: uncharacterized protein LOC10	0.987	0.975	0.655	0.0
449462533	578	PREDICTED: uncharacterized protein LOC10	0.931	0.911	0.683	0.0
449506176	578	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.931	0.911	0.679	0.0
297840013	559	hypothetical protein ARALYDRAFT_474906 [	0.862	0.872	0.700	0.0
22330422	559	pentatricopeptide repeat-containing prot	0.878	0.889	0.681	0.0

>gi|225426324|ref|XP_002269028.1| PREDICTED: uncharacterized protein LOC100246151 [Vitis vinifera] gi|297742341|emb|CBI34490.3| unnamed protein product [Vitis vinifera]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/569 (72%), Positives = 483/569 (84%), Gaps = 16/569 (2%)

Query: 1   MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTSALLSFLLAAKKATRLRGFRIEASL 60
           MTLNL+  SP ++S     RF +     S P  +T   L+F ++       + FR +AS 
Sbjct: 1   MTLNLT--SP-WLS-----RFSRPSPHVSVPEISTFRTLTFFVSPTS----KSFRTKASE 48

Query: 61  SE----SENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRG 116
           ++    S + ++++ELLSRVS A+DA E LE++AE  +RSGGV+   +CC II+AA+DR 
Sbjct: 49  NDVARASASKLLDDELLSRVSRARDADEALEMIAERWERSGGVVDTADCCSIISAALDRN 108

Query: 117 NTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLI 176
           N DLALS+FY+MRSSFDQ  S +  L++RWKWSRPDV VYTSLV+ LAASL+VS+ALR+I
Sbjct: 109 NADLALSVFYSMRSSFDQVASGSSALIERWKWSRPDVRVYTSLVRGLAASLRVSEALRMI 168

Query: 177 DDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSI 236
            D+ RVGVSPGEEVPFGK+VRCP+C+IAVAVAQPQHGIQIVSC+KCRY+YELVSGDI SI
Sbjct: 169 ADVCRVGVSPGEEVPFGKLVRCPSCMIAVAVAQPQHGIQIVSCSKCRYQYELVSGDIASI 228

Query: 237 HSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGE 296
            SEEISMD+PAWKRGLRFLQIMK+ IPAAVHSIVVQTPSGMARTHRFAT+TVDLPAQ GE
Sbjct: 229 ESEEISMDVPAWKRGLRFLQIMKESIPAAVHSIVVQTPSGMARTHRFATKTVDLPAQEGE 288

Query: 297 RITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLL 356
           R+T++ AAPSNVYRE+GPFK SPKA NFYPGEP+CLTNHKDGRES L+RAP KD + SLL
Sbjct: 289 RVTIALAAPSNVYREIGPFKVSPKAPNFYPGEPMCLTNHKDGRESLLVRAPRKDGSSSLL 348

Query: 357 NPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSV 416
           NP  L PLL VLA GDAAS +IDPSLPQFLSVAAV SLAVG TLN L+FPQ+++LPQ++V
Sbjct: 349 NPSILFPLLVVLAAGDAASGIIDPSLPQFLSVAAVGSLAVGTTLNTLVFPQMNRLPQRTV 408

Query: 417 DTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVK 476
           DTIAI+QQLLSQYD+LQSRIKDLK AAEKEVWMLARMCQLENKI A+GEPSYRARKSRVK
Sbjct: 409 DTIAIKQQLLSQYDMLQSRIKDLKGAAEKEVWMLARMCQLENKILAIGEPSYRARKSRVK 468

Query: 477 RVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELE 536
           +VREGL+NSL+GRIELIDSYARISSMIEIE+EM SDVLAAEA S+ ESI+EQIQQIMELE
Sbjct: 469 KVREGLENSLKGRIELIDSYARISSMIEIEVEMASDVLAAEAASNVESIAEQIQQIMELE 528

Query: 537 NLEEKWRLQAEANDEAERLINSQAMPTEQ 565
           NLEE+WR  AEANDE ERL++S+ +PTEQ
Sbjct: 529 NLEERWRQVAEANDEVERLLSSELIPTEQ 557

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537809|ref|XP_002509971.1| conserved hypothetical protein [Ricinus communis] gi|223549870|gb|EEF51358.1| conserved hypothetical protein [Ricinus communis]

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/496 (78%), Positives = 447/496 (90%), Gaps = 5/496 (1%)

Query: 70  EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMR 129
           E+ L+R+S ++DA E L++++E S R  G++++ + C II AA+DR N DLALSIFY+MR
Sbjct: 79  EDSLARLSSSRDADEALQLISEISGRRSGLVSISDSCAIITAALDRNNADLALSIFYSMR 138

Query: 130 SSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE 189
           SSFDQG+SENG     WKWSRPDVSVYT LVQ LA++LKVSDAL+ ID I RVGVSPGEE
Sbjct: 139 SSFDQGVSENG-----WKWSRPDVSVYTLLVQGLASALKVSDALKTIDYICRVGVSPGEE 193

Query: 190 VPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWK 249
           VPFGKVVRCP+C IAVAVAQPQHGIQI SC+KCRYKYELVSGDI +I+SEEIS D+PAW+
Sbjct: 194 VPFGKVVRCPSCKIAVAVAQPQHGIQIASCSKCRYKYELVSGDITTINSEEISKDLPAWE 253

Query: 250 RGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVY 309
           RGLRFLQ+MK+ IP AVHSIVVQTPSG ARTHRFATETVDLPAQ GER+T++SAAPSNVY
Sbjct: 254 RGLRFLQLMKRSIPTAVHSIVVQTPSGSARTHRFATETVDLPAQEGERVTIASAAPSNVY 313

Query: 310 REVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLA 369
           R VGPFKFSPKA N YPGEP+CLTNH++G+ES LLRAP KD N SLLNP  L+PLLAVLA
Sbjct: 314 RNVGPFKFSPKAPNTYPGEPMCLTNHENGQESPLLRAPVKDGNLSLLNPSVLIPLLAVLA 373

Query: 370 TGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQY 429
           TGDAAS +IDPSLPQFLSVAA+ASL VG TLN+L+ PQL+QLPQKSVDT+AI+QQLLSQY
Sbjct: 374 TGDAASGIIDPSLPQFLSVAAIASLGVGATLNSLVLPQLNQLPQKSVDTVAIKQQLLSQY 433

Query: 430 DLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGR 489
           D+LQSRI+DLK AAEKEVWMLARMCQLENKI+AVGEPSYRAR++RVKRVREGL+ SL+GR
Sbjct: 434 DVLQSRIRDLKVAAEKEVWMLARMCQLENKIFAVGEPSYRARRTRVKRVREGLEISLKGR 493

Query: 490 IELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEAN 549
           IELIDSYARISSMIEIE+EMDSDVLAAEAV +AE+I+EQIQQIMELENLEE+W+LQAEAN
Sbjct: 494 IELIDSYARISSMIEIEVEMDSDVLAAEAVGNAETIAEQIQQIMELENLEERWKLQAEAN 553

Query: 550 DEAERLINSQAMPTEQ 565
           DEAERL++SQ MPTE+
Sbjct: 554 DEAERLLSSQPMPTER 569

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072206|ref|XP_002303652.1| predicted protein [Populus trichocarpa] gi|222841084|gb|EEE78631.1| predicted protein [Populus trichocarpa]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/560 (72%), Positives = 466/560 (83%), Gaps = 29/560 (5%)

Query: 31  PNNNTSA-LLSFLLAAKKAT------RLRGFR-IEASLSESENGVVE---------EELL 73
           PN  T+A L+S + +  K T      R    + +  SLS+S+NG+V+         EE L
Sbjct: 30  PNYITTATLISLVFSFNKTTPFLSTSRTPSLKPLPFSLSQSDNGIVDNTNSVLSLNEESL 89

Query: 74  SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFD 133
           SRVS AKDA+E L+I+AE + RS G+++V +C  II AAIDR N DLALS+FYAMRSSFD
Sbjct: 90  SRVSAAKDANEALQIIAEITNRSNGLVSVTDCRGIITAAIDRCNADLALSVFYAMRSSFD 149

Query: 134 QGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFG 193
           QG +E    ++RWKWSRPDVSVYTSLVQ LAA+LKVSDAL++ID I R+GVSP EEVPFG
Sbjct: 150 QGDTE----IERWKWSRPDVSVYTSLVQGLAAALKVSDALKMIDYICRIGVSPSEEVPFG 205

Query: 194 KVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLR 253
           KVVRCPTC+IAVAVAQPQHGIQI SCAKCRY+YELVSGDI SI SE ISMD+PAW+RGLR
Sbjct: 206 KVVRCPTCMIAVAVAQPQHGIQIASCAKCRYQYELVSGDITSIDSEAISMDLPAWERGLR 265

Query: 254 FLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVG 313
           FLQIMKQ IPAAVHSIVVQTPSGMART RFATET+DLPAQ GER+T+SSAAPSN+YR+VG
Sbjct: 266 FLQIMKQSIPAAVHSIVVQTPSGMARTQRFATETIDLPAQEGERVTISSAAPSNIYRDVG 325

Query: 314 PFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDA 373
           PFKFSPKA N YPGEPLCL NH++ RES LLRAP KD   SLLNP  LVPLLAVLATGDA
Sbjct: 326 PFKFSPKAPNVYPGEPLCLMNHENDRESLLLRAPVKDGKLSLLNPSVLVPLLAVLATGDA 385

Query: 374 ASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQ 433
           AS +IDPSLPQFL VAA++SL VG TLN L+ P+L+QLPQKSVD  AI+Q+LLSQYD+LQ
Sbjct: 386 ASGIIDPSLPQFLLVAAISSLGVGATLNKLVLPRLNQLPQKSVDVTAIKQKLLSQYDVLQ 445

Query: 434 SRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELI 493
           SRIK+LKEAAEKEVWMLARMCQLENKI+AVGE SYRAR  R+KRVREGL+ SL+G I LI
Sbjct: 446 SRIKELKEAAEKEVWMLARMCQLENKIFAVGELSYRARIDRLKRVREGLEKSLKGLIGLI 505

Query: 494 DSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELEN--------LEEKWRLQ 545
           DSYARISSMIEIE+EMDSDVLAAEA+S+ ESI+EQIQ+IMELEN        L ++WRLQ
Sbjct: 506 DSYARISSMIEIEVEMDSDVLAAEAMSNVESIAEQIQKIMELENLEEAENSCLMQRWRLQ 565

Query: 546 AEANDEAERLINSQAMPTEQ 565
           AEANDEAERL++SQ +PTEQ
Sbjct: 566 AEANDEAERLLSSQPVPTEQ 585

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058249|ref|XP_002299470.1| predicted protein [Populus trichocarpa] gi|222846728|gb|EEE84275.1| predicted protein [Populus trichocarpa]

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/503 (77%), Positives = 443/503 (88%), Gaps = 9/503 (1%)

Query: 68  VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYA 127
           + E+ LSRVS AKDA+E L+I++  + +S G+++V +CC II AAIDRGNTDLALS+FYA
Sbjct: 87  LNEDSLSRVSAAKDANEALQIISVITNKSNGLVSVTDCCGIITAAIDRGNTDLALSVFYA 146

Query: 128 MRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG 187
           MRSSFDQG   + T ++RWKWSRPDVSVYTSLVQ LAA+LKVSDAL++ID I RVGVSP 
Sbjct: 147 MRSSFDQG---SVTEIERWKWSRPDVSVYTSLVQGLAAALKVSDALKMIDYICRVGVSPS 203

Query: 188 E-EVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIP 246
           E EVPFG VVRCPTC+IAVAVAQPQHGIQI SC+KCRY+YELVSGDI SI SE ISMD+P
Sbjct: 204 EDEVPFGMVVRCPTCMIAVAVAQPQHGIQIASCSKCRYQYELVSGDITSIDSEAISMDLP 263

Query: 247 AWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAPS 306
           AW+RGLRFLQ+MKQ IPAAVHSIVVQTPSGMART RFATETVDLPAQ  ER+T++SA PS
Sbjct: 264 AWERGLRFLQLMKQSIPAAVHSIVVQTPSGMARTQRFATETVDLPAQKSERVTIASAVPS 323

Query: 307 NVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLA 366
           NVYR VGPFKFSPKA N YPGEP+CLTNH++GRES LLRAP KD   SLLNP  LVPLLA
Sbjct: 324 NVYRNVGPFKFSPKAPNVYPGEPMCLTNHENGRESLLLRAPVKDGKPSLLNPSVLVPLLA 383

Query: 367 VLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLL 426
           VL  GDAAS +IDPSLPQFL VAA++SL VG TLN L+FP L+QLPQKSVD  AI+Q+LL
Sbjct: 384 VLVAGDAASGIIDPSLPQFLVVAAISSLGVGATLNTLVFPGLNQLPQKSVDATAIKQKLL 443

Query: 427 SQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSL 486
           SQYDLLQSRIK+LKEAAEKEVWMLARMCQLENKI+AVGEPSYRAR++RVKRVREGL+NSL
Sbjct: 444 SQYDLLQSRIKELKEAAEKEVWMLARMCQLENKIFAVGEPSYRARRTRVKRVREGLENSL 503

Query: 487 RGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEE-----K 541
            GRIELIDSYARISSMIEIE+EMDSDVLAAEA+S+ ESI+EQIQQIMELENLEE     +
Sbjct: 504 EGRIELIDSYARISSMIEIEVEMDSDVLAAEALSNVESIAEQIQQIMELENLEEACFFLR 563

Query: 542 WRLQAEANDEAERLINSQAMPTE 564
           WRLQAEANDEAERL++SQ + TE
Sbjct: 564 WRLQAEANDEAERLLSSQPVTTE 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766222|emb|CAN60038.1| hypothetical protein VITISV_007803 [Vitis vinifera]

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/585 (67%), Positives = 461/585 (78%), Gaps = 50/585 (8%)

Query: 1   MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTSALLSFLLAAKKATRLRGFRIEASL 60
           MTLNL+        S    RF +     S P  +T   L+F ++       + FR +AS 
Sbjct: 1   MTLNLT--------SPWLSRFSRPSPHVSVPEISTFRTLTFFVSPTS----KSFRTKASE 48

Query: 61  SE----SENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRG 116
           ++    S + ++++ELLSRVS A+DA E LE++AE  +RSGGV+   +CC II+AA+DR 
Sbjct: 49  NDVARASASKLLDDELLSRVSRARDADEALEMIAERWERSGGVVDTADCCSIISAALDRN 108

Query: 117 NTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLI 176
           N DLALS+FY+MRSSFDQ  S +  L++RWKWSRPDV VYTSLV+ LAASL+VS+ALR+I
Sbjct: 109 NADLALSVFYSMRSSFDQVASGSSALIERWKWSRPDVRVYTSLVRGLAASLRVSEALRMI 168

Query: 177 DDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSI 236
            D+ RVGVSPGEEVPFGK+VRCP+C+IAVAVAQPQHGIQIVSC+KCRY+YELVSGDI SI
Sbjct: 169 ADVCRVGVSPGEEVPFGKLVRCPSCMIAVAVAQPQHGIQIVSCSKCRYQYELVSGDIASI 228

Query: 237 HSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGE 296
            SEEISMD+PAWKRGLRFLQIMK+ IPAAVHSIVVQTPSGMARTHRFAT+TVDLPAQ GE
Sbjct: 229 ESEEISMDVPAWKRGLRFLQIMKESIPAAVHSIVVQTPSGMARTHRFATKTVDLPAQEGE 288

Query: 297 RITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLL 356
           R+T++ AAPSNVYRE+GPFK SPKA NFYPGEP+CLTNHKDGRES L+RAP KD + SLL
Sbjct: 289 RVTIALAAPSNVYREIGPFKVSPKAPNFYPGEPMCLTNHKDGRESLLVRAPRKDGSSSLL 348

Query: 357 NPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSV 416
           NP  L PLL VLA GDAAS +IDPSLPQFLSVAAV SLAVG TLN L+FPQ+++LPQ++V
Sbjct: 349 NPSILFPLLVVLAAGDAASGIIDPSLPQFLSVAAVGSLAVGTTLNTLVFPQMNRLPQRTV 408

Query: 417 DTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYR------- 469
           DTIAI+QQLLSQYD+LQSRIKDLK AAEKEVWMLARMCQLENKI A+GEPSYR       
Sbjct: 409 DTIAIKQQLLSQYDMLQSRIKDLKGAAEKEVWMLARMCQLENKILAIGEPSYRSGSKFKC 468

Query: 470 ---------ARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVS 520
                    ARKSRVK+VREGL+NSL+GRIELIDSYARISSMIEIE+EM SDVLAAEA S
Sbjct: 469 LKKHSFVFSARKSRVKKVREGLENSLKGRIELIDSYARISSMIEIEVEMASDVLAAEAAS 528

Query: 521 SAESISEQIQQIMELENLEEKWRLQAEANDEAERLINSQAMPTEQ 565
           +                   +WR  AEANDE ERL++S+ +PTEQ
Sbjct: 529 NV------------------RWRQVAEANDEVERLLSSELIPTEQ 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527678|ref|XP_003532435.1| PREDICTED: uncharacterized protein LOC100781803 [Glycine max]

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/578 (65%), Positives = 462/578 (79%), Gaps = 19/578 (3%)

Query: 1   MTLNLSLCSPNFISSSSTPRFGKIHETSSNPNNNTS--ALLSFLLAAKKATRLRGF-RIE 57
           MTLNL  C+P F      P       +SS PN +T   +LL F  ++        F   +
Sbjct: 1   MTLNL--CTPCFSRMLHHP----FSSSSSLPNTHTPLPSLLFFSPSSLPNPNQSTFISTK 54

Query: 58  ASLSESEN--------GVVEEELLSRVSG-AKDASEVLEIVAESSKRSGGVLTVDECCLI 108
           AS+SES N         + +++L+ R++  AKDA E L ++A++S R+ GV++  +CC I
Sbjct: 55  ASVSESHNETSDDTAANLFDQQLILRLAATAKDADEALLMIADNSSRNDGVVSTSDCCSI 114

Query: 109 INAAIDRGNTDLALSIFYAMRSSFDQG-LSENGTLVDRWKWSRPDVSVYTSLVQSLAASL 167
           I+AA++R N  LALSIFYAMR++F QG  S +G L +RWKWSRP+ +VYT L+Q LAA L
Sbjct: 115 ISAALNRNNPQLALSIFYAMRATFHQGYFSLHGPLAERWKWSRPNANVYTLLIQGLAAVL 174

Query: 168 KVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYE 227
           +VSDALR+I  I  +GVSPGEEVPFGK+V+CP+C IAV VAQPQ GIQIVSCAKCRY+YE
Sbjct: 175 RVSDALRVIRYICEIGVSPGEEVPFGKIVKCPSCRIAVGVAQPQQGIQIVSCAKCRYQYE 234

Query: 228 LVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATET 287
           LVSGDIVSI SEEISMDI AW+RGLR++++MKQ IPAAVHSIVVQTPSG+ARTHRFATET
Sbjct: 235 LVSGDIVSIESEEISMDITAWERGLRYVKLMKQSIPAAVHSIVVQTPSGLARTHRFATET 294

Query: 288 VDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAP 347
           VDLPAQ GER+TV+ AAPSNVYR+VGPFKFSP+A +FYPGE +C+TNHKDGRES LLRAP
Sbjct: 295 VDLPAQEGERVTVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAP 354

Query: 348 TKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQ 407
            K+ N SLL P  + PLLA+LATGD AS +IDP LPQ LSV AV++L VG T+N ++ PQ
Sbjct: 355 RKEVNSSLLKPSLIFPLLALLATGDVASGIIDPGLPQLLSVVAVSTLVVGSTVNTVVLPQ 414

Query: 408 LSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPS 467
            +QLPQKSV+  AI+QQLLSQYD+L SRI DLKEAAEKE+WMLARMCQLENKI AVGEP+
Sbjct: 415 FNQLPQKSVEVTAIKQQLLSQYDVLLSRINDLKEAAEKEIWMLARMCQLENKISAVGEPA 474

Query: 468 YRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISE 527
           YR R S+VKRVRE LQNSLRGRIELI+SYARISSMIEIE+EM++DVLAAE  S+ +SI E
Sbjct: 475 YRTRISKVKRVRESLQNSLRGRIELIESYARISSMIEIEVEMETDVLAAETASNMDSIKE 534

Query: 528 QIQQIMELENLEEKWRLQAEANDEAERLINSQAMPTEQ 565
           QI+QIMELENLEE+W++QAEANDEAERL++SQ MP ++
Sbjct: 535 QIEQIMELENLEERWKIQAEANDEAERLLSSQPMPLDE 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462533|ref|XP_004148995.1| PREDICTED: uncharacterized protein LOC101209802 [Cucumis sativus]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/534 (68%), Positives = 444/534 (83%), Gaps = 7/534 (1%)

Query: 37  ALLSFLLAAKKATRLRGFRIE--ASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSK 94
           A  SF  + +  T L G  I+  A+     + ++++EL+  VSGAKDA E L ++ + S 
Sbjct: 46  AFTSFSKSLRVRTSLSGSDIDGSAAFENPASELLDDELIVVVSGAKDADEALGMIGDKSG 105

Query: 95  RSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQ---GLSENGTLVDRWKWSRP 151
           RSGG ++V +C LII+AA+ R N +LALS+FYAMRS+F Q   G++EN ++V+RWKWSRP
Sbjct: 106 RSGGTVSVSDCRLIISAALKRNNPELALSVFYAMRSTFYQAWEGVNENASIVERWKWSRP 165

Query: 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQ 211
           DV VYT L++ LAASL+VSDALR+I+ I RVGV+P EEVPFGKVV+CP+C++AVAVAQPQ
Sbjct: 166 DVHVYTLLIEGLAASLRVSDALRMIEIICRVGVTPAEEVPFGKVVKCPSCMVAVAVAQPQ 225

Query: 212 HGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVV 271
           HGIQIVSCAKC YKYEL+SG+IV+I SEEI MD PAW++ LRFL IMK++IP AVHSIVV
Sbjct: 226 HGIQIVSCAKCCYKYELISGNIVNIESEEIRMDTPAWEKALRFLNIMKRKIPVAVHSIVV 285

Query: 272 QTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLC 331
           QTPSG+ART +FATET DLPA+ GER+T+++AAPSNV+REVGP KFSPK  N Y GE +C
Sbjct: 286 QTPSGVARTQKFATETADLPAREGERVTIAAAAPSNVFREVGPIKFSPKDPNLYSGEAMC 345

Query: 332 LTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAV 391
           LTNH DGRES LLR P K+ N SLLNP  L PL+ + A GDAAS VIDPSLPQ L VA  
Sbjct: 346 LTNHSDGRESLLLRVPGKE-NSSLLNPSILFPLIVLSAAGDAASGVIDPSLPQLLIVAGF 404

Query: 392 ASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLA 451
           ASLA G TLN+LI PQ ++LPQ+SVD IAI+QQLLSQY++LQSRI DLK AAEKEVWMLA
Sbjct: 405 ASLAAGATLNSLILPQFNRLPQRSVDIIAIKQQLLSQYNVLQSRIGDLKLAAEKEVWMLA 464

Query: 452 RMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDS 511
           RMCQLENKI+AVGEPSYRAR+SR+K+VREGL+NSL+ RIELI+SYARISSMIEIE+EM+S
Sbjct: 465 RMCQLENKIFAVGEPSYRARRSRIKKVREGLENSLKQRIELIESYARISSMIEIEVEMES 524

Query: 512 DVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAERLINSQAMPTEQ 565
           DV+AAEA SS E +SEQI+QIM LENLEE+W+LQAEANDEAERL+N Q+MPTE+
Sbjct: 525 DVIAAEAASSVERVSEQIEQIMVLENLEERWKLQAEANDEAERLLN-QSMPTEK 577

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506176|ref|XP_004162674.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101209802 [Cucumis sativus]

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/534 (67%), Positives = 443/534 (82%), Gaps = 7/534 (1%)

Query: 37  ALLSFLLAAKKATRLRGFRIE--ASLSESENGVVEEELLSRVSGAKDASEVLEIVAESSK 94
           A  SF  + +  T L G  I+  A+     + ++++EL+  VSGAKDA E L ++ + S 
Sbjct: 46  AFTSFSKSLRVRTSLSGSDIDGSAAFENPASELLDDELIVVVSGAKDADEALGMIGDKSG 105

Query: 95  RSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQ---GLSENGTLVDRWKWSRP 151
           RSGG ++V +C LII+AA+ R N +LALS+FYAMRS+F Q   G++EN ++V+RWKWSRP
Sbjct: 106 RSGGTVSVSDCRLIISAALKRNNPELALSVFYAMRSTFYQAWEGVNENASIVERWKWSRP 165

Query: 152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQ 211
           DV VYT L++ LAASL+VSDALR+I+ I RVGV+P EEVPFGKVV+CP+C++AVAVAQPQ
Sbjct: 166 DVHVYTLLIEGLAASLRVSDALRMIEIICRVGVTPAEEVPFGKVVKCPSCMVAVAVAQPQ 225

Query: 212 HGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVV 271
           HGIQIVSCAKC YKYEL+SG+IV+I SEEI MD PAW++ LRFL IMK++IP AVHSIVV
Sbjct: 226 HGIQIVSCAKCCYKYELISGNIVNIESEEIRMDTPAWEKALRFLNIMKRKIPVAVHSIVV 285

Query: 272 QTPSGMARTHRFATETVDLPAQVGERITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLC 331
           QTPSG+ART +FATET DLPA+ GER+T+++AAPSNV+REVGP KFSPK  N Y GE +C
Sbjct: 286 QTPSGVARTQKFATETADLPAREGERVTIAAAAPSNVFREVGPIKFSPKDPNLYSGEAMC 345

Query: 332 LTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAV 391
           LTNH DGRES LLR P K+ + SLLNP  L PL+ + A GDAAS VIDPSLPQ L VA  
Sbjct: 346 LTNHSDGRESLLLRVPGKE-SSSLLNPSILFPLIVLSAAGDAASGVIDPSLPQLLIVAGF 404

Query: 392 ASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLA 451
           ASLA G TLN+LI PQ ++LPQ+SVD IAI+QQLLSQY++LQSRI DLK AAEKEVWMLA
Sbjct: 405 ASLAAGATLNSLILPQFNRLPQRSVDIIAIKQQLLSQYNVLQSRIGDLKLAAEKEVWMLA 464

Query: 452 RMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISSMIEIEIEMDS 511
           RMCQLENK +AVGEPSYRAR+SR+K+VREGL+NSL+ RIELI+SYARISSMIEIE+EM+S
Sbjct: 465 RMCQLENKXFAVGEPSYRARRSRIKKVREGLENSLKQRIELIESYARISSMIEIEVEMES 524

Query: 512 DVLAAEAVSSAESISEQIQQIMELENLEEKWRLQAEANDEAERLINSQAMPTEQ 565
           DV+AAEA SS E +SEQI+QIM LENLEE+W+LQAEANDEAERL+N Q+MPTE+
Sbjct: 525 DVIAAEAASSVERVSEQIEQIMVLENLEERWKLQAEANDEAERLLN-QSMPTEK 577

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840013|ref|XP_002887888.1| hypothetical protein ARALYDRAFT_474906 [Arabidopsis lyrata subsp. lyrata] gi|297333729|gb|EFH64147.1| hypothetical protein ARALYDRAFT_474906 [Arabidopsis lyrata subsp. lyrata]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/494 (70%), Positives = 422/494 (85%), Gaps = 6/494 (1%)

Query: 67  VVEEELLSRVSGAKDASEVLEIVAES-SKRSGGVLTVDECCLIINAAIDRGNTDLALSIF 125
           ++++ELLS VS  +DA E LE++++      GG++ +++C  II+AA+ RGN DLALSIF
Sbjct: 70  ILDDELLSSVSAVRDADEALEMISDRFGSNRGGIVELEDCRSIISAAVSRGNVDLALSIF 129

Query: 126 YAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVS 185
           + MR+SFD G S+N    DRW+WSRPDV VYT LV SLAASL+VSD+LR+I DI RVG+S
Sbjct: 130 HTMRASFDLGGSDN----DRWRWSRPDVEVYTMLVNSLAASLRVSDSLRIIRDICRVGIS 185

Query: 186 PGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIHSEEISMDI 245
           P EEVPFGK+VRCPTCLIA+AVAQPQHG+QI SCA CRY+YEL SGDI SI SEE+  DI
Sbjct: 186 PAEEVPFGKIVRCPTCLIAIAVAQPQHGVQIASCANCRYQYELFSGDITSIESEELGKDI 245

Query: 246 PAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGERITVSSAAP 305
           P W++GLR +QI K +I ++VHSIVVQTPSG+ARTHRFATET +LPAQ GER+T++SAAP
Sbjct: 246 PLWEKGLRLIQIKKNKITSSVHSIVVQTPSGIARTHRFATETAELPAQEGERVTIASAAP 305

Query: 306 SNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLLNPVSLVPLL 365
           SNVYR+VGPFKF PKA NFYPGEP+ LT HKDGRES LLR P+KD    LL P  L+PLL
Sbjct: 306 SNVYRQVGPFKFIPKAPNFYPGEPMSLTKHKDGRESLLLRPPSKD-GDKLLQPSFLIPLL 364

Query: 366 AVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSVDTIAIRQQL 425
           AVLATGDAAS +IDPSLPQ LSVAAV SLA+G T+N+ + PQL+QLP+++VD + I+QQL
Sbjct: 365 AVLATGDAASGIIDPSLPQLLSVAAVTSLAIGATVNSFVLPQLNQLPERTVDVVGIKQQL 424

Query: 426 LSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNS 485
           LSQYD+LQ RI+DL EA EKEVWMLARMCQLENKI AVGEP+YR R++RVK+VRE L+NS
Sbjct: 425 LSQYDVLQRRIRDLNEAVEKEVWMLARMCQLENKILAVGEPAYRTRRTRVKKVRESLENS 484

Query: 486 LRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELENLEEKWRLQ 545
           ++G+IELIDSYARISSMIEIE+EMD+DVLAAEAV++ E+I+ QI+QIMELENLEEKW++Q
Sbjct: 485 IKGKIELIDSYARISSMIEIEVEMDTDVLAAEAVNNTENIALQIEQIMELENLEEKWKIQ 544

Query: 546 AEANDEAERLINSQ 559
           AEANDEAERL++SQ
Sbjct: 545 AEANDEAERLLSSQ 558

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330422|ref|NP_176624.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|79320695|ref|NP_001031231.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|17529266|gb|AAL38860.1| unknown protein [Arabidopsis thaliana] gi|23296917|gb|AAN13202.1| unknown protein [Arabidopsis thaliana] gi|332196118|gb|AEE34239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332196119|gb|AEE34240.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/503 (68%), Positives = 424/503 (84%), Gaps = 6/503 (1%)

Query: 58  ASLSESENGVVEEELLSRVSGAKDASEVLEIVAES-SKRSGGVLTVDECCLIINAAIDRG 116
            S ++  + ++++ELLS VS  +DA E L ++++      GG++ +++C  II+AA+ RG
Sbjct: 61  GSAADVSSSILDDELLSSVSAVRDADEALAMISDRFGSNRGGIVELEDCRSIISAAVSRG 120

Query: 117 NTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLI 176
           N DLALSIFY MR+SFD G S+N    DRW WSRPDV VYT LV  LAASL+VSD+LR+I
Sbjct: 121 NVDLALSIFYTMRASFDLGGSDN----DRWSWSRPDVEVYTMLVNGLAASLRVSDSLRII 176

Query: 177 DDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSI 236
            DI RVG+SP EEVPFGK+VRCP+CLIA+AVAQPQHG+QIVSCA CRY+YEL SGDI SI
Sbjct: 177 RDICRVGISPAEEVPFGKIVRCPSCLIAIAVAQPQHGVQIVSCANCRYQYELFSGDITSI 236

Query: 237 HSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGE 296
            SEE+  DIP W++GLR +QI K +I ++VHSIVVQTPSG ARTHRFATET +LPAQ GE
Sbjct: 237 DSEELGKDIPLWEKGLRLIQIKKNKITSSVHSIVVQTPSGTARTHRFATETAELPAQEGE 296

Query: 297 RITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHSLL 356
           R+T++SAAPSNVYR+VGPFKF  KA NFYPGEP+ LT HKDGRES LLR P+KD +  +L
Sbjct: 297 RVTIASAAPSNVYRQVGPFKFISKAPNFYPGEPMSLTKHKDGRESILLRPPSKDGDK-IL 355

Query: 357 NPVSLVPLLAVLATGDAASRVIDPSLPQFLSVAAVASLAVGVTLNNLIFPQLSQLPQKSV 416
            P  L+PLLA+LATGDAAS VIDPSLPQ LSVA V SLA+G T+N+ + P+L+QLP+++V
Sbjct: 356 QPSFLIPLLAILATGDAASGVIDPSLPQLLSVATVTSLAIGATVNSFVLPKLNQLPERTV 415

Query: 417 DTIAIRQQLLSQYDLLQSRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVK 476
           D + I+QQLLSQYD+LQ RI+DLKEA EKEVWMLARMCQLENKI AVGEP+YR R++RVK
Sbjct: 416 DVVGIKQQLLSQYDVLQRRIRDLKEAVEKEVWMLARMCQLENKILAVGEPAYRTRRTRVK 475

Query: 477 RVREGLQNSLRGRIELIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQIMELE 536
           +VRE L+NS++G+I+LIDSYARISSMIEIE+EMDSDVLAAEAV++ E+I++QI+QIMELE
Sbjct: 476 KVRESLENSIKGKIDLIDSYARISSMIEIEVEMDSDVLAAEAVNNTENIAQQIEQIMELE 535

Query: 537 NLEEKWRLQAEANDEAERLINSQ 559
           NLEEKW++QAEANDEAERL++SQ
Sbjct: 536 NLEEKWKIQAEANDEAERLLSSQ 558

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	566
TAIR|locus:2014220	559	AT1G64430 "AT1G64430" [Arabido	0.876	0.887	0.579	5.8e-153

TAIR|locus:2014220 AT1G64430 "AT1G64430" [Arabidopsis thaliana (taxid:3702)]

 Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
 Identities = 291/502 (57%), Positives = 360/502 (71%)

Query:    59 SLSESENGVVEEELLSRVSGAKDASEVLEIVAES-SKRSGGVLTVDECCLIINAAIDRGN 117
             S ++  + ++++ELLS VS  +DA E L ++++      GG++ +++C  II+AA+ RGN
Sbjct:    62 SAADVSSSILDDELLSSVSAVRDADEALAMISDRFGSNRGGIVELEDCRSIISAAVSRGN 121

Query:   118 TDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLID 177
              DLALSIFY MR+SFD G S+N    DRW WSRPDV VYT LV  LAASL+VSD+LR+I 
Sbjct:   122 VDLALSIFYTMRASFDLGGSDN----DRWSWSRPDVEVYTMLVNGLAASLRVSDSLRIIR 177

Query:   178 DISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQIVSCAKCRYKYELVSGDIVSIH 237
             DI RVG+SP EEVPFGK+VRCP+CLIA+AVAQPQHG+QIVSCA CRY+YEL SGDI SI 
Sbjct:   178 DICRVGISPAEEVPFGKIVRCPSCLIAIAVAQPQHGVQIVSCANCRYQYELFSGDITSID 237

Query:   238 SEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIVVQTPSGMARTHRFATETVDLPAQVGER 297
             SEE+  DIP W++GLR +QI K +I ++VHSIVVQTPSG ARTHRFATET +LPAQ GER
Sbjct:   238 SEELGKDIPLWEKGLRLIQIKKNKITSSVHSIVVQTPSGTARTHRFATETAELPAQEGER 297

Query:   298 ITVSSAAPSNVYREVGPFKFSPKALNFYPGEPLCLTNHKDGRESQLLRAPTKDRNHXXXX 357
             +T++SAAPSNVYR+VGPFKF  KA NFYPGEP+ LT HKDGRES LLR P+KD +     
Sbjct:   298 VTIASAAPSNVYRQVGPFKFISKAPNFYPGEPMSLTKHKDGRESILLRPPSKDGDKILQP 357

Query:   358 XXXXXXXXXXXXTGDAASRVIDPSLPQFXXXXXXXXXXXXXTLNNLIFPQLSQLPQKSVD 417
                         TGDAAS VIDPSLPQ              T+N+ + P+L+QLP+++VD
Sbjct:   358 SFLIPLLAILA-TGDAASGVIDPSLPQLLSVATVTSLAIGATVNSFVLPKLNQLPERTVD 416

Query:   418 TIAIRXXXXXXXXXXXXRIKDLKEAAEKEVWMLARMCQLENKIYAVGEPSYRARKSRVKR 477
              + I+            RI+DLKEA EKEVWMLARMCQLENKI AVGEP+YR R++RVK+
Sbjct:   417 VVGIKQQLLSQYDVLQRRIRDLKEAVEKEVWMLARMCQLENKILAVGEPAYRTRRTRVKK 476

Query:   478 VREGLQNSLRGRIELIDSYARXXXXXXXXXXXXXXVLXXXXXXXXXXXXXXXXXXMELEN 537
             VRE L+NS++G+I+LIDSYAR              VL                  MELEN
Sbjct:   477 VRESLENSIKGKIDLIDSYARISSMIEIEVEMDSDVLAAEAVNNTENIAQQIEQIMELEN 536

Query:   538 LEEKWRLQAEANDEAERLINSQ 559
             LEEKW++QAEANDEAERL++SQ
Sbjct:   537 LEEKWKIQAEANDEAERLLSSQ 558


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      566       480   0.00079  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  263 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.63u 0.12s 35.75t   Elapsed:  00:00:01
  Total cpu time:  35.63u 0.12s 35.75t   Elapsed:  00:00:01
  Start:  Sat May 11 10:57:02 2013   End:  Sat May 11 10:57:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006745001 SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (593 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	566
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.88
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
PLN03218	1060	maturation of RBCL 1; Provisional	99.87
PLN03077	857	Protein ECB2; Provisional	99.83
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.82
PLN03077	857	Protein ECB2; Provisional	99.8
PF13041	50	PPR_2: PPR repeat family	99.65
PF13041	50	PPR_2: PPR repeat family	99.58
PF12854	34	PPR_1: PPR repeat	99.19
PF12854	34	PPR_1: PPR repeat	99.07
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.68
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.67
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.61
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.52
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.52
KOG4422	625	consensus Uncharacterized conserved protein [Funct	98.47
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.39
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.59
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.59
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.5
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.08
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.66
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.65
KOG4422	625	consensus Uncharacterized conserved protein [Funct	96.46
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	96.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.33
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.1
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.05
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	95.61
PRK15359	144	type III secretion system chaperone protein SscB;	95.58
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.29
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.6
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.45
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	94.39
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.98
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	93.77
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	93.77
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	93.64
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	93.28
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	93.12
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	93.09
PRK12370	553	invasion protein regulator; Provisional	93.04
PRK11189	296	lipoprotein NlpI; Provisional	92.97
PRK12370	553	invasion protein regulator; Provisional	92.88
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.8
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	92.39
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	92.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	92.13
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	91.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	91.32
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	91.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	90.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	90.88
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	90.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	90.05
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	90.05
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	90.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	89.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	89.03
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	88.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	88.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	87.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	87.68
PRK10803	263	tol-pal system protein YbgF; Provisional	87.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	87.15
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	87.15
PRK15359	144	type III secretion system chaperone protein SscB;	86.57
PF13512	142	TPR_18: Tetratricopeptide repeat	86.19
PF13371	73	TPR_9: Tetratricopeptide repeat	86.06
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	85.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	85.23
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	84.3
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	83.54
KOG3941	406	consensus Intermediate in Toll signal transduction	83.07
PRK14574	822	hmsH outer membrane protein; Provisional	83.02
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	82.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	82.44
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	82.14
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.08
PF10112	199	Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate	81.75
KOG4570	418	consensus Uncharacterized conserved protein [Funct	81.13
PRK11189	296	lipoprotein NlpI; Provisional	80.49
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	80.24

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.88  E-value=5.7e-23  Score=223.63  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=124.3

Q ss_pred             chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccc
Q 047498           67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDR  145 (566)
Q Consensus        67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~  145 (566)
                      ..-|+||++|||.|++++|.++|++|.+     +|+++||+||+|||+.|++++|+++|++|.+.|+.||.+|| +++.+
T Consensus       260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a  334 (697)
T PLN03081        260 FVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI  334 (697)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3446777777777777777777777753     46777777777777777777777777777777777766666 33221


Q ss_pred             -----------------------------------c--------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 047498          146 -----------------------------------W--------------KWSRPDVSVYTSLVQSLAASLKVSDALRLI  176 (566)
Q Consensus       146 -----------------------------------~--------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLL  176 (566)
                                                         +              ++..||++|||+||.|||+.|+.++|+++|
T Consensus       335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf  414 (697)
T PLN03081        335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF  414 (697)
T ss_pred             HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence                                               1              123799999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcccccceeccch----hhHHHHhhccc---Cccee-------eeccccc-----ccceeeeceeeeee
Q 047498          177 DDISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQPQ---HGIQI-------VSCAKCR-----YKYELVSGDIVSIH  237 (566)
Q Consensus       177 eEM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Qpq---~Giql-------V~c~~cR-----y~YELfSg~i~s~~  237 (566)
                      ++|.+.|+.| |.+||++||+++.    .++|..+++.+   +|++.       +++++||     .++++|..      
T Consensus       415 ~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~------  487 (697)
T PLN03081        415 ERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR------  487 (697)
T ss_pred             HHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH------
Confidence            9999999999 8999999999553    24888887744   57763       6777775     34455421      


Q ss_pred             ecccccChHHHHHHHHHHH
Q 047498          238 SEEISMDIPAWKRGLRFLQ  256 (566)
Q Consensus       238 se~~~~~~~~~~~~~r~~~  256 (566)
                       -.+..|...|...+....
T Consensus       488 -~~~~p~~~~~~~Ll~a~~  505 (697)
T PLN03081        488 -APFKPTVNMWAALLTACR  505 (697)
T ss_pred             -CCCCCCHHHHHHHHHHHH
Confidence             123445555555544443

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=1.9e-22  Score=232.14  Aligned_cols=138  Identities=18%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW--  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~--  146 (566)
                      |+||++||+.|++++|.++|++|.+ .|..||+++||+||++|||.|++++|.++|++|.+.|+.||.+|| +++.++  
T Consensus       441 n~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k  519 (1060)
T PLN03218        441 NMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR  519 (1060)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            5566666666666666666666654 345566666666666666666666666666666666666666666 444333  


Q ss_pred             ----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCCcccccceeccch-h---hHH
Q 047498          147 ----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR--VGVSPGEEVPFGKVVRCPT-C---LIA  204 (566)
Q Consensus       147 ----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~--rGcsPdDvVTYntLI~C~t-C---~~A  204 (566)
                                      ..+.||.+|||+||++|||.|++++|+++|++|..  .|+.| |.+|||+||+++. |   ++|
T Consensus       520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA  598 (1060)
T PLN03218        520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRA  598 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence                            01356666666666666666666666666666654  45566 5566666666442 1   255


Q ss_pred             HHhhc
Q 047498          205 VAVAQ  209 (566)
Q Consensus       205 ~aV~Q  209 (566)
                      .++++
T Consensus       599 ~elf~  603 (1060)
T PLN03218        599 KEVYQ  603 (1060)
T ss_pred             HHHHH
Confidence            55544

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.87  E-value=4.2e-22  Score=229.31  Aligned_cols=138  Identities=19%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW--  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~--  146 (566)
                      ++||++||+.|++++|.++|++|.+ .|..||.++||+||++|||.|++++|+++|++|...|+.||.+|| +++.++  
T Consensus       583 naLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k  661 (1060)
T PLN03218        583 GALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH  661 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            5566666666666666666666654 344566666666666666666666666666666666666666666 443322  


Q ss_pred             ----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch----hhHHHH
Q 047498          147 ----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT----CLIAVA  206 (566)
Q Consensus       147 ----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t----C~~A~a  206 (566)
                                      ..+.||.+|||+||++|||.|++++|.++|++|.+.|+.| |++|||+||+++.    .++|.+
T Consensus       662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAle  740 (1060)
T PLN03218        662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALE  740 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence                            1135666666666666666666666666666666666666 5666666666552    125666


Q ss_pred             hhc
Q 047498          207 VAQ  209 (566)
Q Consensus       207 V~Q  209 (566)
                      +++
T Consensus       741 lf~  743 (1060)
T PLN03218        741 VLS  743 (1060)
T ss_pred             HHH
Confidence            655

>PLN03077 Protein ECB2; Provisional

Probab=99.83  E-value=8.9e-21  Score=210.74  Aligned_cols=136  Identities=14%  Similarity=0.169  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc
Q 047498           68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW  146 (566)
Q Consensus        68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~  146 (566)
                      +-|+||++||++|++++|.++|++|.+     ||+++||+||.|||+.|+.++|+++|++|.+.|+.||.+|| .++.++
T Consensus       224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        224 VVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC  298 (857)
T ss_pred             hHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence            448888888888888888888888873     68888888888888888888888888888888888888888 444221


Q ss_pred             -------------------------------------------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 047498          147 -------------------------------------------------KWSRPDVSVYTSLVQSLAASLKVSDALRLID  177 (566)
Q Consensus       147 -------------------------------------------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLe  177 (566)
                                                                       ++..||++|||+||+|||+.|++++|+++|+
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence                                                             1236777777777777777777888888888


Q ss_pred             HHHhCCCCCCCcccccceeccch----hhHHHHhhc
Q 047498          178 DISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQ  209 (566)
Q Consensus       178 EM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Q  209 (566)
                      +|.+.|+.| |.+||+++|+++.    .+.|.++.+
T Consensus       379 ~M~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~  413 (857)
T PLN03077        379 LMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHE  413 (857)
T ss_pred             HHHHhCCCC-CceeHHHHHHHHhccchHHHHHHHHH
Confidence            888888888 6788888887442    125555544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.82  E-value=8.1e-20  Score=199.11  Aligned_cols=129  Identities=12%  Similarity=0.120  Sum_probs=117.0

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW--  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~--  146 (566)
                      +.+|.+|++.|++++|+++|+.|....+..||..|||+||+++++.|+++.|.++|..|.+.|+.||..+| .++..+  
T Consensus        91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k  170 (697)
T PLN03081         91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK  170 (697)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence            78999999999999999999999853345899999999999999999999999999999999999999999 555433  


Q ss_pred             ------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          147 ------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       147 ------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                                  .+..||++|||+||+|||+.|++++|+++|++|.+.|+.| |.+||+++|++.
T Consensus       171 ~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~  234 (697)
T PLN03081        171 CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRAS  234 (697)
T ss_pred             CCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHH
Confidence                        3358999999999999999999999999999999999999 789998888743

>PLN03077 Protein ECB2; Provisional

Probab=99.80  E-value=1.3e-19  Score=201.51  Aligned_cols=127  Identities=11%  Similarity=0.115  Sum_probs=113.3

Q ss_pred             chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-ccccc
Q 047498           67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDR  145 (566)
Q Consensus        67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~  145 (566)
                      .+-|+||++|++.|++++|.++|++|.+     ||+++||+||+||||.|+.++|+++|++|...|+.||.+|| .++..
T Consensus       122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~  196 (857)
T PLN03077        122 RLGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT  196 (857)
T ss_pred             hHHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence            3569999999999999999999999974     79999999999999999999999999999999999999988 33221


Q ss_pred             c-------------------------------------------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 047498          146 W-------------------------------------------------KWSRPDVSVYTSLVQSLAASLKVSDALRLI  176 (566)
Q Consensus       146 ~-------------------------------------------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLL  176 (566)
                      +                                                 ++..||++|||+||.|||+.|++++|+++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf  276 (857)
T PLN03077        197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF  276 (857)
T ss_pred             hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence            1                                                 224789999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcccccceeccc
Q 047498          177 DDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       177 eEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      ++|.+.|+.| |.+||+++|++.
T Consensus       277 ~~M~~~g~~P-d~~ty~~ll~a~  298 (857)
T PLN03077        277 FTMRELSVDP-DLMTITSVISAC  298 (857)
T ss_pred             HHHHHcCCCC-ChhHHHHHHHHH
Confidence            9999999999 899999999854

>PF13041 PPR_2: PPR repeat family

Probab=99.65  E-value=2.2e-16  Score=119.05  Aligned_cols=50  Identities=24%  Similarity=0.317  Sum_probs=48.8

Q ss_pred             cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHh
Q 047498          100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAA  165 (566)
Q Consensus       100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCK  165 (566)
                      ||+++||+||+||||.|++++|+++|++|.++|+                .||.+|||+||+||||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~----------------~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI----------------KPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHcC
Confidence            8999999999999999999999999999999999                5999999999999997

>PF13041 PPR_2: PPR repeat family

Probab=99.58  E-value=6.8e-16  Score=116.33  Aligned_cols=48  Identities=23%  Similarity=0.552  Sum_probs=47.0

Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      ||++|||+||+||||.|++++|.++|++|.++|+.| |.+|||++|+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P-~~~Ty~~li~~~   48 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKP-DSYTYNILINGL   48 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 899999999986

>PF12854 PPR_1: PPR repeat

Probab=99.19  E-value=1.6e-11  Score=87.95  Aligned_cols=31  Identities=29%  Similarity=0.637  Sum_probs=30.0

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      .||++|||+||+||||.|++++|+++|++|.
T Consensus         4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            6999999999999999999999999999994

>PF12854 PPR_1: PPR repeat

Probab=99.07  E-value=9.8e-11  Score=83.89  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             CCCcChhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 047498           97 GGVLTVDECCLIINAAIDRGNTDLALSIFYAMR  129 (566)
Q Consensus        97 Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~  129 (566)
                      |..||++|||+||+||||.|++++|+++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            668999999999999999999999999999995

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.75  E-value=1.3e-08  Score=68.92  Aligned_cols=34  Identities=26%  Similarity=0.573  Sum_probs=32.7

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd  187 (566)
                      +|||+||++||+.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            5899999999999999999999999999999993

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.68  E-value=7.8e-08  Score=95.98  Aligned_cols=134  Identities=12%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +.+.+++.|+.++|.++|+++.+. +......+++.|+.+|++.|+.++|.++|++|.+.                  .|
T Consensus       220 la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------------------~p  280 (389)
T PRK11788        220 LGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE------------------YP  280 (389)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CC
Confidence            334455555555555555555421 11111233455555555555555555555555433                  47


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch---h--h--HHHHhhc--ccCccee---eec
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT---C--L--IAVAVAQ--PQHGIQI---VSC  219 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t---C--~--~A~aV~Q--pq~Giql---V~c  219 (566)
                      |...|+.+++.+++.|++++|+++|+++.+.  .| +.++|+.+++...   .  +  ++..+++  ..++++.   .+|
T Consensus       281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c  357 (389)
T PRK11788        281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC  357 (389)
T ss_pred             CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence            7777888999999999999999999988876  68 6678887776431   0  1  4444444  1223332   668


Q ss_pred             ccccccce
Q 047498          220 AKCRYKYE  227 (566)
Q Consensus       220 ~~cRy~YE  227 (566)
                      +.|.+..+
T Consensus       358 ~~cg~~~~  365 (389)
T PRK11788        358 RNCGFTAR  365 (389)
T ss_pred             CCCCCCCc
Confidence            88854333

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.67  E-value=3.2e-08  Score=66.94  Aligned_cols=34  Identities=18%  Similarity=0.108  Sum_probs=32.1

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 047498          103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGL  136 (566)
Q Consensus       103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pd  136 (566)
                      ++||+||+|||+.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            4799999999999999999999999999999765

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.61  E-value=2e-07  Score=93.10  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=87.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      +.|...+++.|+.++|.+.|+++.+.   .||...++.+...+++.|+.++|.++|+++.+.                  
T Consensus       253 ~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------------------  311 (389)
T PRK11788        253 PKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR------------------  311 (389)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------
Confidence            46778999999999999999999852   377777899999999999999999999998865                  


Q ss_pred             CCChHhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 047498          150 RPDVSVYTSLVQSLAA---SLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCK---sGRVdEAlkLLeEM~~rGcsPd  187 (566)
                      .||..+|+.+++++++   .|+.++|+.+|++|.++++.|+
T Consensus       312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence            4999999999999997   5699999999999999999884

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.52  E-value=8.7e-08  Score=64.24  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=30.0

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGV  184 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc  184 (566)
                      +|||+||++||+.|++++|.++|++|.++||
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            6999999999999999999999999999997

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.52  E-value=1.2e-07  Score=64.96  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=32.9

Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                      +.|||++|++++|.|++++|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            5799999999999999999999999999999998

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=3.4e-07  Score=98.64  Aligned_cols=107  Identities=16%  Similarity=0.234  Sum_probs=90.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .+||+|+||--..+.|.++++|-.+ ..+..+-.+||.||.+-.-.-.    .++..||.+..+                
T Consensus       211 s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm----------------  269 (625)
T KOG4422|consen  211 SIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM----------------  269 (625)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc----------------
Confidence            4789999999999999999999876 4567888999999876432221    678999998887                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCCcccccceecc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDA----LRLIDDISRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEA----lkLLeEM~~rGcsPdDvVTYntLI~C  198 (566)
                      +||..|+|+|+.+..|.|+.++|    .+++.||+.-|+.| ..-+|--||.-
T Consensus       270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~  321 (625)
T KOG4422|consen  270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKN  321 (625)
T ss_pred             CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHH
Confidence            69999999999999999977665    57889999999999 88999988873

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.39  E-value=2.9e-07  Score=61.65  Aligned_cols=31  Identities=23%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047498          103 DECCLIINAAIDRGNTDLALSIFYAMRSSFD  133 (566)
Q Consensus       103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~  133 (566)
                      +|||+||++||+.|++++|.++|++|.++|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            5899999999999999999999999999886

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.38  E-value=4.4e-07  Score=62.16  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=32.1

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQG  135 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P  135 (566)
                      +.+||++|++|+|.|+++.|+++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999975

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.59  E-value=0.00051  Score=73.20  Aligned_cols=60  Identities=10%  Similarity=0.138  Sum_probs=39.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      ..+...+++.|+.++|..+|.++.+.  ...+...+..+...+++.|+.++|+++|+++...
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  596 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADA  596 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            45566666777777777777777531  2234556667777777777777777777777654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.59  E-value=0.00052  Score=73.12  Aligned_cols=125  Identities=9%  Similarity=0.054  Sum_probs=84.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW--  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~--  146 (566)
                      ..+.+-+.+.|++++|.+.|+++.+.  ...+..+++.+...+++.|+.++|..+|+++...... +...+ .+...+  
T Consensus       503 ~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~  579 (899)
T TIGR02917       503 ANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLG  579 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHH
Confidence            45677888999999999999999852  2346788999999999999999999999999765431 11111 110000  


Q ss_pred             ---------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          147 ---------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       147 ---------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                                     .....+..+|..+.+.+++.|+.++|++.|+++.+.  .|++...|..+..++
T Consensus       580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~  645 (899)
T TIGR02917       580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAY  645 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence                           112345666777777777777777777777777654  344445555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.50  E-value=0.0004  Score=75.18  Aligned_cols=105  Identities=11%  Similarity=0.120  Sum_probs=90.2

Q ss_pred             cchh-HHHHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498           66 GVVE-EELLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV  143 (566)
Q Consensus        66 ~~~~-~aLIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi  143 (566)
                      +.+| .++++.+...-++|++.+++.+......+ ..-..|..++|..|.+.|..++|+++++.=...|+          
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi----------  134 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI----------  134 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc----------
Confidence            3466 67889888899999999998888643333 23345778999999999999999999999888898          


Q ss_pred             cccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          144 DRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       144 ~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                            -||-+|||.|+|.|-|.|...+|.++..+|...+...
T Consensus       135 ------F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~  171 (429)
T PF10037_consen  135 ------FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFD  171 (429)
T ss_pred             ------CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccC
Confidence                  5999999999999999999999999999999987665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.08  E-value=0.0036  Score=57.79  Aligned_cols=79  Identities=13%  Similarity=0.170  Sum_probs=69.1

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCC--------hhHHHHHHHHHHhcCCCCCCCccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGN--------TDLALSIFYAMRSSFDQGLSENGT  141 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGr--------VDeAlsLF~EM~srG~~PdvvTYa  141 (566)
                      .-|..+...+++.....+++..+. .|. .|++.+||.++.+.+++.-        +-..+.+|+.|...++        
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l--------  100 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL--------  100 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc--------
Confidence            457778888999999999999984 566 8999999999999999875        4567889999999988        


Q ss_pred             cccccccCCCChHhHHHHHHHHHhc
Q 047498          142 LVDRWKWSRPDVSVYTSLVQSLAAS  166 (566)
Q Consensus       142 Li~~~rw~~PDVVTYNTLIdGLCKs  166 (566)
                              +||--|||++|..|.|.
T Consensus       101 --------KP~~etYnivl~~Llkg  117 (120)
T PF08579_consen  101 --------KPNDETYNIVLGSLLKG  117 (120)
T ss_pred             --------CCcHHHHHHHHHHHHHh
Confidence                    59999999999999874

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.08  E-value=0.0096  Score=43.97  Aligned_cols=92  Identities=16%  Similarity=0.042  Sum_probs=73.7

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +...+...|+.++|.+.|.+..+.  ...+...+..+-..+...|+.++|.+.|++......                 .
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~   66 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-----------------D   66 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------c
Confidence            344567789999999999998742  222346678888999999999999999999876543                 3


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +..++..+...+.+.|+.++|.+.+.+..+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            4468889999999999999999999887653

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.84  E-value=0.0029  Score=58.36  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=68.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcC--------CHHHHHHHHH
Q 047498          106 CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASL--------KVSDALRLID  177 (566)
Q Consensus       106 NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsG--------RVdEAlkLLe  177 (566)
                      ..-|.-+...|+...-..+|+..++.|+.               .|.+-+||.++++.|+..        ++-+.+-++.
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~---------------lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYq   93 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGIT---------------LPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQ   93 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCC---------------CCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence            45567777779999999999999999984               599999999999999975        4667888999


Q ss_pred             HHHhCCCCCCCcccccceeccc
Q 047498          178 DISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       178 EM~~rGcsPdDvVTYntLI~C~  199 (566)
                      +|...+++| +.-|||++|.+.
T Consensus        94 DiL~~~lKP-~~etYnivl~~L  114 (120)
T PF08579_consen   94 DILSNKLKP-NDETYNIVLGSL  114 (120)
T ss_pred             HHHHhccCC-cHHHHHHHHHHH
Confidence            999999999 789999999875

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.66  E-value=0.025  Score=50.30  Aligned_cols=95  Identities=11%  Similarity=-0.062  Sum_probs=67.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|+.++|.+.|.+..+.  ..-+...++.+-..+.+.|+.++|.+.|++.....-                
T Consensus        35 ~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------------   96 (234)
T TIGR02521        35 VQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP----------------   96 (234)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----------------
Confidence            34556677788888888888887642  222456677788888888888888888888765432                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                       .+...|+.+...+.+.|+.++|.+.|++..+..
T Consensus        97 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  129 (234)
T TIGR02521        97 -NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP  129 (234)
T ss_pred             -CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence             334556666777777777777777777776643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.65  E-value=0.037  Score=49.26  Aligned_cols=112  Identities=7%  Similarity=-0.096  Sum_probs=69.5

Q ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC-cc-ccc---
Q 047498           69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE-NG-TLV---  143 (566)
Q Consensus        69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv-TY-aLi---  143 (566)
                      -..+-..+...|+.++|.+.+++..+.  ...+...++.+-..+++.|+.++|.+.|++.......++.. .+ .+.   
T Consensus        68 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        68 YLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            345566777899999999999988742  22345677888889999999999999999987643211110 00 000   


Q ss_pred             ---ccc-----------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          144 ---DRW-----------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       144 ---~~~-----------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                         ..+           .....+...|..+..-+.+.|+.++|.+.+++....
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               000           011123445666666666666666666666666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.0065  Score=66.63  Aligned_cols=97  Identities=22%  Similarity=0.215  Sum_probs=76.8

Q ss_pred             ccchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHH----HHHHHHHHhcCCCCCCCcc
Q 047498           65 NGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLA----LSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        65 ~~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeA----lsLF~EM~srG~~PdvvTY  140 (566)
                      ...+|+.-.+|+--+-.+-..-+++.||.. ....||..|+|+|+++..|.|+.+.|    ++++.||+.-|+.      
T Consensus       237 k~kv~~~aFN~lI~~~S~~~~K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVe------  309 (625)
T KOG4422|consen  237 KGKVYREAFNGLIGASSYSVGKKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVE------  309 (625)
T ss_pred             hheeeHHhhhhhhhHHHhhccHHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC------
Confidence            345776666666666666666899999985 56799999999999999999987665    5688999999994      


Q ss_pred             ccccccccCCCChHhHHHHHHHHHhcCCHHH-HHHHHHH
Q 047498          141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSD-ALRLIDD  178 (566)
Q Consensus       141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdE-AlkLLeE  178 (566)
                                |..-||--+|.-+|+.+.-.+ |.-.+.+
T Consensus       310 ----------PsLsSyh~iik~f~re~dp~k~as~~i~d  338 (625)
T KOG4422|consen  310 ----------PSLSSYHLIIKNFKRESDPQKVASSWIND  338 (625)
T ss_pred             ----------cchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence                      999999999999999886532 4444433

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.36  E-value=0.013  Score=63.76  Aligned_cols=80  Identities=15%  Similarity=0.087  Sum_probs=71.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .++|+.|-+-|..++++++++.=.. .|.-||-.|||.||+.|.|.|+...|.+++-+|...+.                
T Consensus       107 ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~----------------  169 (429)
T PF10037_consen  107 HALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEE----------------  169 (429)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhc----------------
Confidence            5899999999999999999999886 88899999999999999999999999999999998876                


Q ss_pred             CCChHhHHHHHHHHHhc
Q 047498          150 RPDVSVYTSLVQSLAAS  166 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKs  166 (566)
                      ..|-.||..-+.++++.
T Consensus       170 ~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  170 FDNPSTQALALYSCYKY  186 (429)
T ss_pred             cCCchHHHHHHHHHHHh
Confidence            25667888878877776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.33  E-value=0.083  Score=43.67  Aligned_cols=97  Identities=14%  Similarity=0.074  Sum_probs=73.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      +...+-+.|+.++|.+.|.++...... ......+..+-..+.+.|+.++|++.|++.....-.               .
T Consensus         8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------------~   72 (119)
T TIGR02795         8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------------S   72 (119)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---------------C
Confidence            344577899999999999999743211 112345677999999999999999999998864211               1


Q ss_pred             C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          151 P-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       151 P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      | ....+..+-..+-+.|+.++|.+.++++.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            1 13456677778889999999999999999874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.10  E-value=0.078  Score=45.74  Aligned_cols=94  Identities=12%  Similarity=-0.004  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|+.++|.+.|......  ...+...|..+-..+.+.|+.++|...|+.......                 
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----------------   82 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-----------------   82 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence            4456678899999999999998742  234667788888999999999999999998775542                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      .|..+|--+=..+.+.|+.++|++.|+...+..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            466777778889999999999999999888853

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.05  E-value=0.027  Score=57.00  Aligned_cols=83  Identities=8%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             HcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcC----------------ChhHHHHHHHHHHhcCCCCCCCcc
Q 047498           77 SGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRG----------------NTDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        77 CKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaG----------------rVDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      -+.|.++=-..-++.|.+ .|..-|..+||.||+.|=|..                +.+-|++|++.|...|+       
T Consensus        63 ~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV-------  134 (228)
T PF06239_consen   63 RRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGV-------  134 (228)
T ss_pred             CCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCC-------
Confidence            346888888889999998 788889999999999998843                34779999999999999       


Q ss_pred             ccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                               .||.-||..|++-|.+.   +.+++-+.+|
T Consensus       135 ---------~Pd~Et~~~ll~iFG~~---s~p~~K~~rm  161 (228)
T PF06239_consen  135 ---------MPDKETEQMLLNIFGRK---SHPMKKYRRM  161 (228)
T ss_pred             ---------CCcHHHHHHHHHHhccc---cHHHHHHHHH
Confidence                     69999999999999554   4566666665

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=95.61  E-value=0.033  Score=56.38  Aligned_cols=82  Identities=15%  Similarity=0.228  Sum_probs=69.1

Q ss_pred             CcChhhhHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcC------
Q 047498           99 VLTVDECCLIINAAIDR-----GNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASL------  167 (566)
Q Consensus        99 ~PDvvTYNsLI~GlCKa-----GrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsG------  167 (566)
                      .-|-.+|..+|+.|++.     |.|+=-..-++.|.+.|+.                =|.-+||.|+|.|=|..      
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~----------------kDL~~Y~~LLDvFPKg~fvp~n~  107 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE----------------KDLEVYKALLDVFPKGKFVPRNF  107 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc----------------ccHHHHHHHHHhCCCCCcccccH
Confidence            34677788888888754     8888888899999999994                78888888888887732      


Q ss_pred             ----------CHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          168 ----------KVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       168 ----------RVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                                +.+=|+++|++|...||-| |.-||..|++
T Consensus       108 fQ~~F~hyp~Qq~c~i~lL~qME~~gV~P-d~Et~~~ll~  146 (228)
T PF06239_consen  108 FQAEFMHYPRQQECAIDLLEQMENNGVMP-DKETEQMLLN  146 (228)
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHcCCCC-cHHHHHHHHH
Confidence                      3467999999999999999 7899999998

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.58  E-value=0.14  Score=46.61  Aligned_cols=94  Identities=6%  Similarity=-0.170  Sum_probs=79.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+...|++++|.+.|+.....  ...+...|+.+-..+-+.|++++|...|+.......                 .|.
T Consensus        32 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----------------~~~   92 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----------------SHP   92 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CCc
Confidence            4567799999999999998742  235778889999999999999999999999986532                 578


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      .+|.-+-..|-+.|+.++|++.|+.-.+  ..|++
T Consensus        93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~  125 (144)
T PRK15359         93 EPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYAD  125 (144)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence            8888899999999999999999999877  45644

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.29  E-value=0.034  Score=45.47  Aligned_cols=81  Identities=9%  Similarity=0.063  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh-HhHH
Q 047498           79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV-SVYT  157 (566)
Q Consensus        79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV-VTYN  157 (566)
                      .|++++|+.+++++.+.....++...+-.+-.++++.|+.++|++++++ ...+                  |+- -..-
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------------------~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------------------PSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------------------HCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------------------CCCHHHHH
Confidence            5889999999999975321112333344489999999999999999988 3221                  322 3333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 047498          158 SLVQSLAASLKVSDALRLIDD  178 (566)
Q Consensus       158 TLIdGLCKsGRVdEAlkLLeE  178 (566)
                      .+-+.|-+.|+.++|++.|++
T Consensus        63 l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   63 LLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHhc
Confidence            446678899999999999975

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.60  E-value=0.24  Score=45.46  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--CccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLS--ENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDD  178 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv--vTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE  178 (566)
                      |..+++++|-++++.|+++.-.++.+..  .|+..+.  .+..+ .......|+.-+-.+++++||.+|++..|+++++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~~-~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~   77 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGDY-PPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF   77 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCcc-CCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            5678899999999999998888877543  3553211  11011 11112379999999999999999999999999998


Q ss_pred             HHhC-CCCCCCcccccceec
Q 047498          179 ISRV-GVSPGEEVPFGKVVR  197 (566)
Q Consensus       179 M~~r-GcsPdDvVTYntLI~  197 (566)
                      ..++ +++- +...+..|++
T Consensus        78 fs~~Y~I~i-~~~~W~~Ll~   96 (126)
T PF12921_consen   78 FSRKYPIPI-PKEFWRRLLE   96 (126)
T ss_pred             HHHHcCCCC-CHHHHHHHHH
Confidence            8775 6444 5566666665

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.56  E-value=0.13  Score=50.54  Aligned_cols=95  Identities=14%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .++.-+-+.++++++.++|++..+......|...|..+-..+.+.|+.++|++.|++..+..                  
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------------------  176 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD------------------  176 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------
Confidence            45566778888888888888876422234566677778888888899999998888887653                  


Q ss_pred             C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          151 P-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       151 P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      | |....+.|+..|...|+.++|.++++...+..
T Consensus       177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            4 35556667777777777777777776666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.45  E-value=0.16  Score=39.31  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=43.5

Q ss_pred             HcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           77 SGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        77 CKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      -+.|++++|+++|.+......  =|...+--+..++.+.|+.++|.++|+++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            468999999999999975321  25666778999999999999999999998865

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.39  E-value=0.26  Score=50.66  Aligned_cols=37  Identities=11%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      .+++.+.|.+--.....|+++||.+++.+-..+  .|+|
T Consensus       198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~  234 (290)
T PF04733_consen  198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPND  234 (290)
T ss_dssp             --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCC
Confidence            478899999999999999999999999997654  4654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.98  E-value=0.59  Score=50.61  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             ccchhHHHH----HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc
Q 047498           65 NGVVEEELL----SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        65 ~~~~~~aLI----rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      ...++|-|+    +-+-..+++++|.++|+++.+.   .|++.  -.|...+...++-.+|++++++.....-       
T Consensus       164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p-------  231 (395)
T PF09295_consen  164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEVA--VLLARVYLLMNEEVEAIRLLNEALKENP-------  231 (395)
T ss_pred             CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCC-------
Confidence            344555554    4555589999999999999853   26644  4578888888999999999999885421       


Q ss_pred             ccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch----hhHHHHhhc
Q 047498          141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQ  209 (566)
Q Consensus       141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Q  209 (566)
                                -|....+.-.+-|.+.++.+.|+++.+++..  +.|++-.+|-.|..|+.    .+.|+..+-
T Consensus       232 ----------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN  292 (395)
T PF09295_consen  232 ----------QDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALN  292 (395)
T ss_pred             ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence                      2555666667778899999999999999887  78876778888998886    246665533

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.97  E-value=0.57  Score=49.13  Aligned_cols=94  Identities=11%  Similarity=0.003  Sum_probs=77.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      +.+.+.|++++|+++|++..+.  ..-+...|..+-.+|.+.|+.++|+..|++.....-                 -+.
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----------------~~~   70 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-----------------SLA   70 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------CCH
Confidence            3466789999999999999852  223566788888899999999999999999886532                 367


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      ..|..+-..|.+.|+.++|++.|++..+  +.|++
T Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~  103 (356)
T PLN03088         71 KAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGD  103 (356)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCC
Confidence            7788898999999999999999999987  45644

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=93.77  E-value=0.59  Score=52.77  Aligned_cols=33  Identities=15%  Similarity=0.071  Sum_probs=23.7

Q ss_pred             CCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          150 RPDVSV-YTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       150 ~PDVVT-YNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      .|+... +..+-..|.+.|+.++|++.|++..+.
T Consensus       348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            465443 333556788899999999999887765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=93.77  E-value=0.53  Score=51.96  Aligned_cols=56  Identities=13%  Similarity=-0.058  Sum_probs=44.8

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      -..+...|++++|+..|++..+.   .|+ ...|..+-..+...|+.++|...|++....
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34456799999999999998742   244 457888888899999999999999998754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.76  E-value=0.18  Score=44.93  Aligned_cols=63  Identities=17%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS-----FDQG  135 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr-----G~~P  135 (566)
                      .++..+...|+.++|.++.+.....  ...|...|-.+|.+|.+.|+..+|+++|+++++.     |+.|
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            4455666799999999999999842  3468899999999999999999999999998754     6654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=93.64  E-value=0.13  Score=50.58  Aligned_cols=55  Identities=15%  Similarity=0.024  Sum_probs=40.1

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      .-+-+.|+.++|++.+++..+.   .|| ....+.++..+...|+.++|.++++.....
T Consensus       154 ~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~  209 (280)
T PF13429_consen  154 EIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA  209 (280)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            4456788888888888888743   243 556778888888888888888877777655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=93.28  E-value=0.19  Score=38.92  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          112 AIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       112 lCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      +.+.|+.++|+++|+++.....                 =|...+--|.+.|.+.|++++|.++|+++....
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNP-----------------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTT-----------------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             ChhccCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4578999999999999987632                 266677789999999999999999999887753

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=93.12  E-value=1.2  Score=44.62  Aligned_cols=92  Identities=10%  Similarity=-0.007  Sum_probs=71.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+...|++++|.+.+++..+.  ...|...+..+-+.+...|+.++|..+|++.....-.               .|+.
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---------------~~~~  184 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---------------SSML  184 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---------------Ccch
Confidence            4567799999999999999853  2234567888999999999999999999887643210               1443


Q ss_pred             --HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          154 --SVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       154 --VTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                        ..|-.+-..+-..|+.++|.++|++....
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence              34667888899999999999999998543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=93.09  E-value=0.87  Score=51.48  Aligned_cols=57  Identities=7%  Similarity=0.031  Sum_probs=28.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      +-.+-++|+.++|+.++....... .. +....-.+.-+.+..|+.++|.+.|+++...
T Consensus        49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~  105 (656)
T PRK15174         49 AIACLRKDETDVGLTLLSDRVLTA-KN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAV  105 (656)
T ss_pred             HHHHHhcCCcchhHHHhHHHHHhC-CC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh
Confidence            334555666666666666665311 11 1112233334444566666666666666543

>PRK12370 invasion protein regulator; Provisional

Probab=93.04  E-value=0.77  Score=50.59  Aligned_cols=88  Identities=11%  Similarity=-0.037  Sum_probs=60.5

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh-
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV-  153 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV-  153 (566)
                      -+...|++++|...|++..+.  ..-+...|..+-..+...|+.++|+..|++..+..                  |+- 
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------------------P~~~  406 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD------------------PTRA  406 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------------CCCh
Confidence            455789999999999998742  11235567888888999999999999999987653                  321 


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..|..+...+...|+.++|++.+++..+.
T Consensus       407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        407 AAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             hhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            12223333455566677777766666544

>PRK11189 lipoprotein NlpI; Provisional

Probab=92.97  E-value=1.1  Score=45.27  Aligned_cols=92  Identities=12%  Similarity=-0.050  Sum_probs=75.4

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-Ch
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DV  153 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DV  153 (566)
                      .+.+.|+.++|...|.+..+.  ..-+...|+.+=..+.+.|+.++|++.|++..+.                  .| +.
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------~P~~~  132 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------------------DPTYN  132 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCH
Confidence            366789999999999998752  2235678999999999999999999999998854                  25 46


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      .+|.-+-..|...|+.++|++.|+.-.+.  .|+|
T Consensus       133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~  165 (296)
T PRK11189        133 YAYLNRGIALYYGGRYELAQDDLLAFYQD--DPND  165 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence            67788888889999999999999998874  5644

>PRK12370 invasion protein regulator; Provisional

Probab=92.88  E-value=1  Score=49.66  Aligned_cols=92  Identities=20%  Similarity=0.023  Sum_probs=69.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh-hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTV-DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDv-vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .+-..+...|+.++|...+++..+..   |+. ..+..+...++..|+.++|...|++.....-                
T Consensus       377 ~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~----------------  437 (553)
T PRK12370        377 YYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL----------------  437 (553)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc----------------
Confidence            34456778999999999999997532   432 2344455568889999999999999875432                


Q ss_pred             CCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          150 RPD-VSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       150 ~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                       || ...|..|-..|...|+.++|...++++...
T Consensus       438 -p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        438 -QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             -ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence             53 334777888888999999999999987554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.80  E-value=2.5  Score=37.67  Aligned_cols=94  Identities=24%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             HcCCCHHHHHHHHHHHhhcCCC--CcChh------------------hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 047498           77 SGAKDASEVLEIVAESSKRSGG--VLTVD------------------ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGL  136 (566)
Q Consensus        77 CKAGrlDEAleLL~EM~er~Gg--~PDvv------------------TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pd  136 (566)
                      -.+|+.+++.+.+.+.....+|  .++..                  ....++..+...|+.++|.++.+.+...-.   
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP---   93 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP---   93 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST---
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC---
Confidence            4577888898888888644332  33422                  224455666779999999999999886532   


Q ss_pred             CCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCC
Q 047498          137 SENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR-----VGVSPG  187 (566)
Q Consensus       137 vvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~-----rGcsPd  187 (566)
                                    -|--.|-.||..|.+.|+..+|++.|+++.+     -|+.|+
T Consensus        94 --------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps  135 (146)
T PF03704_consen   94 --------------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS  135 (146)
T ss_dssp             --------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred             --------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence                          5788999999999999999999999988754     489994

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=92.39  E-value=0.93  Score=33.29  Aligned_cols=63  Identities=16%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      .|..+...+.+.|+.++|+.+|++..+..-                 .+...+..+-..+...|+.++|.+.|++....+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   64 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-----------------DNADAYYNLAAAYYKLGKYEEALEDYEKALELD   64 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            356677888999999999999999876532                 334678888889999999999999999988764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=92.29  E-value=1.4  Score=48.83  Aligned_cols=104  Identities=15%  Similarity=-0.040  Sum_probs=68.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc--cccc------
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG--TLVD------  144 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY--aLi~------  144 (566)
                      -..+...|++++|...|++..+.  ..-+...|..+-..+.+.|+.++|++.|++....  .|+....  .+..      
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g  447 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEG  447 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCC
Confidence            34566789999999999988742  1234567888888999999999999999987754  3322111  0000      


Q ss_pred             -----------ccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          145 -----------RWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       145 -----------~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                                 ..+ ..| +...|+-+-..|.+.|++++|++.|+.-..
T Consensus       448 ~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~  495 (615)
T TIGR00990       448 SIASSMATFRRCKK-NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE  495 (615)
T ss_pred             CHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence                       001 134 355667777777777777777777777654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=92.13  E-value=1.4  Score=46.44  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-c-----cc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-T-----LV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-a-----Li  143 (566)
                      ..+.+.+-+.|+.++|.+++.+..+.   .||.  --.++.+.++.|+.++|++..++..++.  ||.... .     ..
T Consensus       267 ~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~  339 (398)
T PRK10747        267 VAMAEHLIECDDHDTAQQIILDGLKR---QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLM  339 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc---CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence            35667777778888887777777631   2332  2335666667777777777777776542  333211 0     00


Q ss_pred             ccccc------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          144 DRWKW------------SRPDVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       144 ~~~rw------------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      ..-.|            ..||..+|-.|-..+.+.|+.++|.+++++=
T Consensus       340 ~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        340 KHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            10011            2799999999999999999999999988753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.82  E-value=1.4  Score=46.42  Aligned_cols=113  Identities=14%  Similarity=0.087  Sum_probs=65.9

Q ss_pred             hHHHHHHHHc--CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccc--c--
Q 047498           69 EEELLSRVSG--AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGT--L--  142 (566)
Q Consensus        69 ~~aLIrGLCK--AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYa--L--  142 (566)
                      +..+.+|+..  .|++++|.+++....+. ...| ...|-..-....+.|+.+.|...|.+|.+.  .||...+.  .  
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a  160 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADH-AEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRV  160 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhc-ccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHH
Confidence            3456666666  59999999888877542 1122 233444445558999999999999998753  22221110  0  


Q ss_pred             -----cccc--------cc--CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047498          143 -----VDRW--------KW--SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVS  185 (566)
Q Consensus       143 -----i~~~--------rw--~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcs  185 (566)
                           ...+        +|  ..| |...+..+...|++.|++++|.+++..+.+.+..
T Consensus       161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~  219 (398)
T PRK10747        161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG  219 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence                 0000        11  133 3455666666666667777777666666666544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=91.72  E-value=0.93  Score=54.20  Aligned_cols=96  Identities=11%  Similarity=0.038  Sum_probs=58.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHH
Q 047498           79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTS  158 (566)
Q Consensus        79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNT  158 (566)
                      .|+.++|...+++..+   ..|+...|..+-..+.+.|+.++|...|++......                 -|...++.
T Consensus       589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----------------d~~~a~~n  648 (987)
T PRK09782        589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEP-----------------NNSNYQAA  648 (987)
T ss_pred             CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CCHHHHHH
Confidence            3666666666666653   124555666666666666666666666666554421                 24556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccccccee
Q 047498          159 LVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVV  196 (566)
Q Consensus       159 LIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI  196 (566)
                      |-..|++.|+.++|+.+|++..+  ..|++.-.+..+=
T Consensus       649 LG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA  684 (987)
T PRK09782        649 LGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLA  684 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            66677777777777777777666  3565443443333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.48  E-value=2  Score=47.70  Aligned_cols=113  Identities=9%  Similarity=0.005  Sum_probs=75.2

Q ss_pred             ccccccccccccccccccc--cccchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCCh
Q 047498           45 AKKATRLRGFRIEASLSES--ENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNT  118 (566)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~--~~~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrV  118 (566)
                      |..++.+++..+..+.++.  .+.+.-+.+=..|.+.|++++|+..|++-.+.   .||.    .+|+-+=++|.+.|+.
T Consensus        52 ~~~~~~~~~~~~~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~  128 (453)
T PLN03098         52 FGRSSSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEG  128 (453)
T ss_pred             eccccCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCH
Confidence            3344444444444433333  22223356666789999999999999997642   2553    4699999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCCCccccccccccCCCChH------hHHHHHHHHHhcCC
Q 047498          119 DLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS------VYTSLVQSLAASLK  168 (566)
Q Consensus       119 DeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV------TYNTLIdGLCKsGR  168 (566)
                      ++|+..|++....+-  .  -|..+    ...||..      .|..|+.++.+.|.
T Consensus       129 dEAla~LrrALelsn--~--~f~~i----~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        129 KKAADCLRTALRDYN--L--KFSTI----LNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             HHHHHHHHHHHHhcc--h--hHHHH----HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            999999999876421  0  11100    0135543      78889999999996

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.33  E-value=3  Score=40.32  Aligned_cols=94  Identities=11%  Similarity=0.023  Sum_probs=71.0

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHH-HhcCC--hhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAA-IDRGN--TDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~Gl-CKaGr--VDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      -+.+-+.|+.++|.+.|++.....  .-|...|..+-..+ ...|+  .++|.++|++-.+...                
T Consensus        80 g~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP----------------  141 (198)
T PRK10370         80 GEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA----------------  141 (198)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC----------------
Confidence            345667899999999998887421  12555666666664 56676  4899999998887643                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                       -|...+..|=..+.+.|+.++|+..++++.+. .+|
T Consensus       142 -~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~  176 (198)
T PRK10370        142 -NEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSP  176 (198)
T ss_pred             -CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Confidence             37788899999999999999999999999775 344

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=91.32  E-value=3.7  Score=37.97  Aligned_cols=98  Identities=13%  Similarity=0.003  Sum_probs=68.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .+-..+.+.|+.++|.+.|++........++ ...|..+-..+.+.|+.++|.+.|++......                
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----------------  103 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----------------  103 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence            3444567799999999999998742111222 45788899999999999999999999876421                


Q ss_pred             CCChHhHHHHHHHHHhcCC--------------HHHHHHHHHHHHhCCCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLK--------------VSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGR--------------VdEAlkLLeEM~~rGcsPd  187 (566)
                       -+...|..+-..+.+.|+              .++|.+.+++..+  ..|+
T Consensus       104 -~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~  152 (172)
T PRK02603        104 -KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPN  152 (172)
T ss_pred             -ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCch
Confidence             245556666666777776              4667777766655  3464

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=91.00  E-value=0.97  Score=41.55  Aligned_cols=69  Identities=9%  Similarity=-0.062  Sum_probs=56.8

Q ss_pred             ccchhHHHHHHHHcCCCHHHHHHHHHHHh--------------hcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498           65 NGVVEEELLSRVSGAKDASEVLEIVAESS--------------KRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS  130 (566)
Q Consensus        65 ~~~~~~aLIrGLCKAGrlDEAleLL~EM~--------------er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s  130 (566)
                      ++.++.++|-++++.|+++....+++..-              ......||..+-.+++.+||..|++..|+++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            35688999999999999999999997651              0011378889999999999999999999999999764


Q ss_pred             c-CC
Q 047498          131 S-FD  133 (566)
Q Consensus       131 r-G~  133 (566)
                      . ++
T Consensus        81 ~Y~I   84 (126)
T PF12921_consen   81 KYPI   84 (126)
T ss_pred             HcCC
Confidence            4 44

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=90.95  E-value=2.5  Score=40.11  Aligned_cols=96  Identities=14%  Similarity=0.093  Sum_probs=68.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .+...+-+.|++++|...|++........|. ..++..+-..+.+.|+.++|...|+++.+..-.               
T Consensus        38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------  102 (235)
T TIGR03302        38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---------------  102 (235)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------
Confidence            3445677899999999999998742211121 246677889999999999999999999876432               


Q ss_pred             CCChHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Q 047498          150 RPDVSVYTSLVQSLAAS----------LKVSDALRLIDDISRV  182 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKs----------GRVdEAlkLLeEM~~r  182 (566)
                      .|++ -|+....|.|..          |+.++|.+.|+++.+.
T Consensus       103 ~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302       103 HPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             CCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            1222 234444555554          6789999999999876

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=90.88  E-value=2  Score=51.45  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=62.8

Q ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498           69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW  148 (566)
Q Consensus        69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw  148 (566)
                      +..|-+-+.+.|+.++|++.|++..+.  ..-|...+..+...+.+.|+.++|.+.|+.....                 
T Consensus       606 ~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----------------  666 (1157)
T PRK11447        606 DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----------------  666 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----------------
Confidence            344445556666666666666666532  1124455666666666677777777766654432                 


Q ss_pred             CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          149 SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       149 ~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                       .| |..++..+-..+-+.|+.++|.++|++.....
T Consensus       667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence             23 45567777788889999999999999988754

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=90.36  E-value=0.9  Score=53.91  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498           99 VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDD  178 (566)
Q Consensus        99 ~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE  178 (566)
                      .||..+|.+++++..-+|++|.|..++++|+++|+.-+.                --|=.|+-|   .+.+.-+..++.-
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~----------------HyFwpLl~g---~~~~q~~e~vlrg  261 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA----------------HYFWPLLLG---INAAQVFEFVLRG  261 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc----------------ccchhhhhc---CccchHHHHHHHH
Confidence            689999999999999999999999999999999984222                222234444   7888888999999


Q ss_pred             HHhCCCCCCCccccccee
Q 047498          179 ISRVGVSPGEEVPFGKVV  196 (566)
Q Consensus       179 M~~rGcsPdDvVTYntLI  196 (566)
                      |...|+.| +.-||..-+
T Consensus       262 mqe~gv~p-~seT~adyv  278 (1088)
T KOG4318|consen  262 MQEKGVQP-GSETQADYV  278 (1088)
T ss_pred             HHHhcCCC-CcchhHHHH
Confidence            99999999 567887665

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=90.05  E-value=2.9  Score=50.21  Aligned_cols=111  Identities=12%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCC---------cc-ccc
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQG-LSE---------NG-TLV  143 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P-dvv---------TY-aLi  143 (566)
                      .+...|++++|...|++..+.  ..-|...+..|-..+.+.|+.++|...|++..+..-.. +..         .| ...
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            355689999999999888742  11256778888889999999999999998876543221 100         11 000


Q ss_pred             -cc---c----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          144 -DR---W----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       144 -~~---~----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                       .+   .                .....|...|..|-+.+.+.|+.++|++.|++..+.  .|++.
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~  419 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNT  419 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence             00   0                011236677888999999999999999999999875  46443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=90.05  E-value=1.1  Score=34.50  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          109 INAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       109 I~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      -..+.+.|+.++|.+.|++..+..                  | |.-.+..+=..+-+.|++++|...|++..+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356889999999999999999764                  4 5666777888899999999999999999763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=90.02  E-value=0.66  Score=36.98  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      .+|+.|=..|++.|+.++|+..|++.... .+          ...--.|+ +.+|+-|=..+.+.|+.++|++++++-.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~----------~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI-EE----------QLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HH----------HTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH----------HHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46788999999999999999999997754 21          00001355 7899999999999999999999998643

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=89.91  E-value=1.2  Score=34.37  Aligned_cols=55  Identities=15%  Similarity=0.134  Sum_probs=45.5

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      ..+.+.|++++|.+.|++..+.  . | +...+..+=..+.+.|+.++|..+|++....
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~--~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQ--D-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCC--S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4578899999999999999853  2 4 5566788888999999999999999998754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=89.03  E-value=4  Score=46.99  Aligned_cols=97  Identities=15%  Similarity=0.045  Sum_probs=75.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+-+.|++++|.+++++..+..  ..+...+..+...+.+.|+.++|+..+++......                
T Consensus        53 ~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P----------------  114 (765)
T PRK10049         53 AAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP----------------  114 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----------------
Confidence            455566788999999999999976421  23455667888889999999999999999886632                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                       .|.. |..|-..+.+.|+.++|+..+++..+.  .|++
T Consensus       115 -~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~  149 (765)
T PRK10049        115 -DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQT  149 (765)
T ss_pred             -CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence             3444 888888999999999999999999985  5644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=88.29  E-value=4  Score=36.78  Aligned_cols=84  Identities=11%  Similarity=-0.011  Sum_probs=62.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      +.+...|++++|...|+...+. .  ||.    ...--|-..+...|+.++|+..++......                 
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~-----------------  115 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA-----------------  115 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc-----------------
Confidence            5677789999999999999853 2  332    233446777888999999999997643222                 


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDD  178 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeE  178 (566)
                       .....+..+=+-|.+.|+.++|+..|+.
T Consensus       116 -~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  116 -FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             -hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             2334566777889999999999999874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=88.15  E-value=3.3  Score=34.16  Aligned_cols=65  Identities=14%  Similarity=0.052  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +|-.+...+.+.|+.++|.+.|.++....-.               .| ....+..+-..+.+.|+.++|+++|++....
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   68 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK---------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK   68 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            5677888899999999999999999865310               01 1345667899999999999999999999875


Q ss_pred             C
Q 047498          183 G  183 (566)
Q Consensus       183 G  183 (566)
                      .
T Consensus        69 ~   69 (119)
T TIGR02795        69 Y   69 (119)
T ss_pred             C
Confidence            3

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=87.88  E-value=4.2  Score=46.79  Aligned_cols=96  Identities=11%  Similarity=-0.032  Sum_probs=77.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+...+-..|+.++|.++|+++...  ..-+...+..+...+-+.|+.++|++.+++....                  .
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l------------------~  423 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL------------------E  423 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------C
Confidence            4555777899999999999999742  2235667899999999999999999999988754                  3


Q ss_pred             CC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          151 PD-VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       151 PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      || .-.+-.+...+-+.|++++|.++++++.+  ..|++
T Consensus       424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~  460 (765)
T PRK10049        424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQD  460 (765)
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCC
Confidence            54 45566666688899999999999999998  45643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=87.68  E-value=5.2  Score=48.11  Aligned_cols=93  Identities=5%  Similarity=-0.069  Sum_probs=76.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|+.++|.+.|++..+.  ..-+...++.+-..+++.|+.++|+.+|++-.+...                 =
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----------------~  675 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-----------------D  675 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------C
Confidence            345678899999999999999852  222455678888899999999999999999876532                 2


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      |...+..|=..+.+.|+.++|...|++-...-
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999998643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=87.49  E-value=10  Score=38.86  Aligned_cols=91  Identities=10%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-+.|++++|+..|+......   |+.    ..+--|-..|.+.|+.++|+..|+.+...-..  .         . -.|
T Consensus       153 ~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s---------~-~~~  217 (263)
T PRK10803        153 VQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--S---------P-KAA  217 (263)
T ss_pred             HHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C---------c-chh
Confidence            355799999999999998532   443    35667778899999999999999999865321  0         0 023


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      |..-+  +...+-+.|+.++|++.|++.++.-
T Consensus       218 dAl~k--lg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        218 DAMFK--VGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHH--HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            33222  2334557899999999999998753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=87.15  E-value=4.9  Score=34.65  Aligned_cols=73  Identities=12%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +......+-..+.+.|+.++|.+.|+.....+-                 .|...|..+-..+.+.|+.++|.+.|+...
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----------------YNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788899999999999999999887543                 467778888899999999999999999887


Q ss_pred             hCCCCCCCcccc
Q 047498          181 RVGVSPGEEVPF  192 (566)
Q Consensus       181 ~rGcsPdDvVTY  192 (566)
                      +.+  |++..+|
T Consensus        79 ~~~--p~~~~~~   88 (135)
T TIGR02552        79 ALD--PDDPRPY   88 (135)
T ss_pred             hcC--CCChHHH
Confidence            764  5333333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00540 hemY_coli hemY protein

Probab=87.15  E-value=7.4  Score=41.17  Aligned_cols=113  Identities=13%  Similarity=0.050  Sum_probs=63.5

Q ss_pred             HHHHHHHc--CCCHHHHHHHHHHHhhcCCCCcChhh-hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC---Ccccc--
Q 047498           71 ELLSRVSG--AKDASEVLEIVAESSKRSGGVLTVDE-CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLS---ENGTL--  142 (566)
Q Consensus        71 aLIrGLCK--AGrlDEAleLL~EM~er~Gg~PDvvT-YNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv---vTYaL--  142 (566)
                      .+.+|+-.  .|++++|.+.+.+..+.   .|+... |=..-..+.+.|+.+.|.+.|.+..+.--.++.   .+++-  
T Consensus        87 ~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        87 QTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            34444443  67777777777666531   233222 222234456667777777777776543211111   01100  


Q ss_pred             --cccc--------cc--CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          143 --VDRW--------KW--SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       143 --i~~~--------rw--~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                        ...+        +|  ..| |...+-.+..-+++.|++++|.+++....+.|..+
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence              0000        11  135 45567788888899999999999999888887654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=86.57  E-value=5.7  Score=36.29  Aligned_cols=77  Identities=10%  Similarity=0.003  Sum_probs=63.0

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498          105 CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGV  184 (566)
Q Consensus       105 YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc  184 (566)
                      +..+-..+.+.|+.++|...|+.......                 .|...|..+-..+-+.|++++|+..|+....  .
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----------------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l   87 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-----------------WSWRAHIALAGTWMMLKEYTTAINFYGHALM--L   87 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence            44567788999999999999999876532                 5788899999999999999999999999997  5


Q ss_pred             CCCCcccccceeccch
Q 047498          185 SPGEEVPFGKVVRCPT  200 (566)
Q Consensus       185 sPdDvVTYntLI~C~t  200 (566)
                      .|++.-.+..+-.|+.
T Consensus        88 ~p~~~~a~~~lg~~l~  103 (144)
T PRK15359         88 DASHPEPVYQTGVCLK  103 (144)
T ss_pred             CCCCcHHHHHHHHHHH
Confidence            6877666666555554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.19  E-value=6.5  Score=37.52  Aligned_cols=91  Identities=13%  Similarity=0.159  Sum_probs=68.2

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCC-CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           76 VSGAKDASEVLEIVAESSKRSG-GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~G-g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      .-+.|++++|.+.|.....+.- +.-..-+-=-||.++.+.|+.++|+..+++..+.-..               +|+ +
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---------------hp~-v   83 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------------HPN-V   83 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CCC-c
Confidence            3467999999999999986522 2223344567999999999999999999998866443               566 5


Q ss_pred             hHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC
Q 047498          155 VYTSLVQSLAASLK-----------------VSDALRLIDDISRV  182 (566)
Q Consensus       155 TYNTLIdGLCKsGR-----------------VdEAlkLLeEM~~r  182 (566)
                      -|--...|||--..                 +.+|+.-|++.+++
T Consensus        84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            68888888887665                 55677777766654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=86.06  E-value=3.7  Score=32.09  Aligned_cols=58  Identities=10%  Similarity=0.076  Sum_probs=48.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498          110 NAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGV  184 (566)
Q Consensus       110 ~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc  184 (566)
                      ..+.+.++.++|+++++.+.....                 -|...|...=..+.+.|++++|++.|+...+.+-
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p-----------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDP-----------------DDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCc-----------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            457899999999999999987643                 3666677777889999999999999999987543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=85.46  E-value=7.3  Score=45.23  Aligned_cols=102  Identities=12%  Similarity=0.038  Sum_probs=78.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhh-hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDE-CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvT-YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      +-.-..|+.|+|..+++...+   ..||-+. .-.+...+-+.+++++|+..++.-.....                 =+
T Consensus        94 ~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-----------------~~  153 (694)
T PRK15179         94 RALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-----------------SS  153 (694)
T ss_pred             HHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-----------------CC
Confidence            455668999999999999875   3466544 47788899999999999999999887643                 24


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---cccccceec
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE---EVPFGKVVR  197 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD---vVTYntLI~  197 (566)
                      ...++.+=..|-+.|+.++|..+|++...  ..|++   .+.|+.+..
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~  199 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLT  199 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHH
Confidence            55677777789999999999999999998  44432   466776665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=85.23  E-value=15  Score=33.61  Aligned_cols=91  Identities=10%  Similarity=-0.084  Sum_probs=62.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .+...+-..|++++|+..|++........+ ...+|+.+=..+-+.|+.++|+..|++....-.                
T Consensus        40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~----------------  103 (168)
T CHL00033         40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP----------------  103 (168)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence            344445568999999999999863211112 234788888899999999999999988775421                


Q ss_pred             CCChHhHHHHHHHHH-------hcCCHHHHHHHHHH
Q 047498          150 RPDVSVYTSLVQSLA-------ASLKVSDALRLIDD  178 (566)
Q Consensus       150 ~PDVVTYNTLIdGLC-------KsGRVdEAlkLLeE  178 (566)
                       -+..+++.+-.-+-       +.|+.++|...+++
T Consensus       104 -~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        104 -FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             -CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence             22344555555555       78888877776654

>TIGR00540 hemY_coli hemY protein

Probab=84.30  E-value=8.1  Score=40.89  Aligned_cols=107  Identities=7%  Similarity=0.012  Sum_probs=64.6

Q ss_pred             chhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhh---hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC--ccc
Q 047498           67 VVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDE---CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE--NGT  141 (566)
Q Consensus        67 ~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvT---YNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv--TYa  141 (566)
                      .+.-.+...+-+.|+.++|.+++++..+.   .||...   .....-+.++.++.+.+.+.++.-.+.  .||..  .+.
T Consensus       264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll  338 (409)
T TIGR00540       264 ALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCIN  338 (409)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHH
Confidence            45556677777888888888888877642   244432   233334445566777777777665533  23222  110


Q ss_pred             ccccc------cc--------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498          142 LVDRW------KW--------------SRPDVSVYTSLVQSLAASLKVSDALRLIDD  178 (566)
Q Consensus       142 Li~~~------rw--------------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE  178 (566)
                      .--+|      .|              ..||..+|..|-.-+-+.|+-++|.+++++
T Consensus       339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            00000      00              158888888888888888888888888775

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=83.54  E-value=8.2  Score=38.65  Aligned_cols=57  Identities=9%  Similarity=0.024  Sum_probs=40.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          109 INAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       109 I~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      -..+...|+.++|...|++.....                 ..|...|..+-+.|...|++++|..++++....
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELN-----------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            344555666666666666665442                 245677888999999999999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=83.07  E-value=3.9  Score=43.91  Aligned_cols=78  Identities=14%  Similarity=0.048  Sum_probs=64.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCCh----------------hHHHHHHHHHHhcCCCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNT----------------DLALSIFYAMRSSFDQGLS  137 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrV----------------DeAlsLF~EM~srG~~Pdv  137 (566)
                      +..-+.+.+|=-+..|+.|.+ .|..-|..+|+.||+-|=|..-.                +=|+.|+++|...|+    
T Consensus        80 ~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGV----  154 (406)
T KOG3941|consen   80 KSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGV----  154 (406)
T ss_pred             hhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCC----
Confidence            344567888888888999997 88888999999999998876532                347899999999998    


Q ss_pred             CccccccccccCCCChHhHHHHHHHHHhcCC
Q 047498          138 ENGTLVDRWKWSRPDVSVYTSLVQSLAASLK  168 (566)
Q Consensus       138 vTYaLi~~~rw~~PDVVTYNTLIdGLCKsGR  168 (566)
                                  +||--+-.+||+.|.+.+-
T Consensus       155 ------------mPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  155 ------------MPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             ------------CCchHHHHHHHHHhccccc
Confidence                        6999999999999966553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=83.02  E-value=8.4  Score=45.57  Aligned_cols=111  Identities=17%  Similarity=0.110  Sum_probs=57.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHH---HHHHhcCChhHHHHHHHHHHhcCCC-CCCCcc-ccccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLII---NAAIDRGNTDLALSIFYAMRSSFDQ-GLSENG-TLVDR  145 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI---~GlCKaGrVDeAlsLF~EM~srG~~-PdvvTY-aLi~~  145 (566)
                      .++.-+...|+.++|+..+++...     |+...|..+.   ..+-..|+.++|+++|+++.+.... |++... .+...
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~-----p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~  147 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQS-----SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA  147 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Confidence            445555566777777777777652     2222233332   3444447777777777777654321 111000 00000


Q ss_pred             --------c------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          146 --------W------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       146 --------~------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                              +      .-..|+..+|-.++.-+-..++-.+|++.+++|.+..  |++
T Consensus       148 ~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n  202 (822)
T PRK14574        148 DAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTS  202 (822)
T ss_pred             hcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCC
Confidence                    0      0025777777444444444556656888888888764  643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=82.92  E-value=5.1  Score=40.75  Aligned_cols=107  Identities=10%  Similarity=0.104  Sum_probs=72.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +++-+-+.+..+.|..+|.+-.+...+..++...+++|-- +-.++.+.|.++|+...+..-                 -
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~f~-----------------~   68 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKKFP-----------------S   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHHHT-----------------T
T ss_pred             HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC-----------------C
Confidence            4555555677999999999998544446677776777733 334666779999999876532                 4


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cccccceec
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE--EVPFGKVVR  197 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD--vVTYntLI~  197 (566)
                      |..-+..=|+-|.+.|+.+.|+.+|++-... +.+..  ..-|...|+
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~  115 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIE  115 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHH
Confidence            5555677789999999999999999999877 54421  134555555

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=82.44  E-value=10  Score=41.41  Aligned_cols=92  Identities=15%  Similarity=0.105  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      ..-.|.+-+-..++-.+|++++.+....  ..-|....+.-.+.|.+.|+.+.|+++.+++...                
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l----------------  263 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL----------------  263 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------
Confidence            4445666666788899999999999842  2236666677778899999999999999999865                


Q ss_pred             cCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          148 WSRPDVS-VYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       148 w~~PDVV-TYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                        .|+-+ +|..|.+.|-+.|++++|+-.+..|
T Consensus       264 --sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  264 --SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             --CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence              46544 9999999999999999999998866

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=82.14  E-value=13  Score=43.23  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+...|.+.+++|+|+..+++...  ...=+...++.+=.++-+.|+.++|..+|++....                  .
T Consensus       125 ~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------------------~  184 (694)
T PRK15179        125 LMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ------------------H  184 (694)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------------------C
Confidence            557889999999999999999984  22223455677778899999999999999999873                  2


Q ss_pred             CC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          151 PD-VSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       151 PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      || .-++..+=+.|-+.|+.++|...|+.-..
T Consensus       185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            54 67777888888899999999998887754

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.08  E-value=25  Score=33.51  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=16.1

Q ss_pred             hHHhHHHHHhHhhhhchHHHHHhh
Q 047498          534 ELENLEEKWRLQAEANDEAERLIN  557 (566)
Q Consensus       534 e~~~l~~~wr~qaea~de~erll~  557 (566)
                      +++.+++.|+-+.|..-+-++++.
T Consensus       166 ~~~~~~~~~~~l~~~~~~~~~l~~  189 (191)
T PF04156_consen  166 QLERLQENLQQLEEKIQELQELLE  189 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345557777777777777776653

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds

Probab=81.75  E-value=50  Score=32.04  Aligned_cols=49  Identities=20%  Similarity=0.389  Sum_probs=36.4

Q ss_pred             HHHHHHhhhhhhhhhccchhHhHHHHHHHHHHhhhhhhhhchhhhhhHHHhhh
Q 047498          449 MLARMCQLENKIYAVGEPSYRARKSRVKRVREGLQNSLRGRIELIDSYARISS  501 (566)
Q Consensus       449 ~lar~~ql~nk~~avg~~~y~ar~~rv~~~r~~l~~~l~~~iel~~~ya~~~~  501 (566)
                      .+.+|++.=++|..    .=...=+|+.+||.=+..-|-+=.+|++.|+.+.+
T Consensus       102 ~~~~~~~~~~~I~~----~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~  150 (199)
T PF10112_consen  102 KVSRIEKIARRIFK----YVEKDPERLTQARKFLYYYLPTAVKLLEKYAELES  150 (199)
T ss_pred             HHHHHHHHHHHHHH----HHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            34455555555543    22344478899999999999999999999999965

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.13  E-value=3.2  Score=44.92  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=68.0

Q ss_pred             cccccccccchhHHHHH-HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC-C--
Q 047498           58 ASLSESENGVVEEELLS-RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF-D--  133 (566)
Q Consensus        58 ~~~~~~~~~~~~~aLIr-GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG-~--  133 (566)
                      .|.+-+.++|=|.---+ .+...|+      +.+.-.. .|+..++.|-..+|+-.-...++|.|..++.+.+..- +  
T Consensus        26 sS~fs~e~~w~~r~~~~~kla~~g~------~~~kkF~-~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~   98 (418)
T KOG4570|consen   26 SSAFSDEHKWEAREKEHYKLADLGS------LMDKKFE-RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWY   98 (418)
T ss_pred             HHHhhhhhhhhHHHHHHHHHhcccc------cchhhhh-cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhh
Confidence            34444566666654444 3444444      1111122 3445666667777777777778888888887776431 1  


Q ss_pred             CCCCCcccccccc-----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          134 QGLSENGTLVDRW-----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       134 ~PdvvTYaLi~~~-----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      .|+.-.|+.+..+                 ...-||-.|++.|||.|-|.+...+|.++.-+|..+
T Consensus        99 ~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen   99 LRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            1222222111110                 012588888888888888888888888887777655

>PRK11189 lipoprotein NlpI; Provisional

Probab=80.49  E-value=12  Score=37.95  Aligned_cols=101  Identities=11%  Similarity=-0.036  Sum_probs=75.7

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      -+...+..+.++.-|.++..+....|+  ...|.-+=..+.+.|+.++|+..|++..+...                 -+
T Consensus        35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-----------------~~   97 (296)
T PRK11189         35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-----------------DM   97 (296)
T ss_pred             ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----------------CC
Confidence            355556788888888888743222222  23466666778999999999999999876532                 35


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccc
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGK  194 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYnt  194 (566)
                      ...|+.+=.-+.+.|+.++|...|+...+  +.|++...|..
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~  137 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLN  137 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            78899999999999999999999999986  56865555543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=80.24  E-value=8.4  Score=29.82  Aligned_cols=63  Identities=10%  Similarity=0.065  Sum_probs=44.9

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASL-KVSDALRLIDDIS  180 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsG-RVdEAlkLLeEM~  180 (566)
                      ...|..+=..+++.|+.++|+..|++-.+...                 -|...|.-+=..+.+.| +.++|++.++.-.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----------------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----------------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----------------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            34566666778888888888888888765421                 35667777777778888 6888888887654


Q ss_pred             h
Q 047498          181 R  181 (566)
Q Consensus       181 ~  181 (566)
                      +
T Consensus        66 ~   66 (69)
T PF13414_consen   66 K   66 (69)
T ss_dssp             H
T ss_pred             H
Confidence            3

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	566
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 92/596 (15%), Positives = 170/596 (28%), Gaps = 185/596 (31%)

Query: 81  DASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS-----FDQG 135
           D  +V ++          +L+ +E   II +      T        + +        ++ 
Sbjct: 34  DCKDVQDMPK-------SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 136 LSEN-GTLVDRWKW-----SRP-------------DVSVYTSL-VQSLAASLKVSDALRL 175
           L  N   L+   K      S               D  V+    V  L   LK+  AL  
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 176 IDDISRVGVS--PGEEVPFGKVVRCPTCLIAVAVA----QPQHGIQI--VSCAKCRYKYE 227
           +     V +    G     GK     T +          Q +   +I  ++   C     
Sbjct: 147 LRPAKNVLIDGVLG----SGK-----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 228 LV------------SGDIVSIHSEEISMDIPAWKRGLRFLQIMKQRIPAAVHSIV---VQ 272
           ++            +    S HS  I + I + +  LR L +  +     +  +V   VQ
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCL--LVLLNVQ 254

Query: 273 TPS------GMAR---THRFATETVDLPAQVGERITVSSAAPSNVYRE----------VG 313
                       +   T RF   T  L A     I++   + +    E            
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 314 PFKFSPKALNFYPGEPLCLT--------------NHKDGRESQLLRA---------PTKD 350
           P     + L      P  L+              N K     +L            P + 
Sbjct: 315 PQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 351 RNH----SLLNPVSLVPLLAVLAT--GDAASRVIDPSLPQFLSVAAVASLAVG------V 398
           R      S+  P + +P   +L+    D     +   + +        SL         +
Sbjct: 372 RKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHK----YSLVEKQPKESTI 426

Query: 399 TLNNLIFPQLSQLPQKSVDTIAIRQQLLSQYDLLQSRIKD------------------LK 440
           ++ ++      +L  K  +  A+ + ++  Y++ ++   D                  LK
Sbjct: 427 SIPSIYL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 441 EAAEKEVWMLARMCQL-----ENKIYAVGEPS---------------YRARKSRVKRVRE 480
                E   L RM  L     E KI                      Y+          E
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 481 GLQNSLRG---RIE--LIDSYARISSMIEIEIEMDSDVLAAEAVSSAESISEQIQQ 531
            L N++     +IE  LI S  + + ++ I +  + + +  EA        +Q+Q+
Sbjct: 543 RLVNAILDFLPKIEENLICS--KYTDLLRIALMAEDEAIFEEA-------HKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	566
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.92
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.92
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.91
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.26
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.84
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.79
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.79
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.62
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.62
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.6
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.48
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.46
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.44
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.43
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.38
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.35
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.32
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.22
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.2
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.18
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.11
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.11
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.0
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.98
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.96
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.92
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.89
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.87
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.83
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.73
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.65
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.6
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	96.38
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.38
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.28
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.16
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.14
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	96.09
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.02
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.99
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.87
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.83
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.8
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	95.43
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.4
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	95.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.13
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	94.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	94.87
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.85
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	94.78
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.67
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	94.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	94.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	94.43
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	94.36
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.35
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	94.33
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	94.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	94.33
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	94.29
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	94.16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	94.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	94.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	93.97
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	93.96
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	93.94
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	93.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	93.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	93.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.76
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	93.76
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.72
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	93.61
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	93.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	93.56
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	93.56
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	93.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	93.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	93.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	93.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	92.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	92.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	92.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	92.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	92.69
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	92.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	92.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	92.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	92.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	92.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	92.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	92.43
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	92.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	92.31
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	92.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	92.11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	92.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	91.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	91.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	91.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	91.19
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	90.87
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	90.76
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	90.65
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	90.52
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	90.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	90.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	90.14
3k9i_A	117	BH0479 protein; putative protein binding protein,	90.05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	89.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	89.07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	88.97
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	88.65
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	88.22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	88.15
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	87.77
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.69
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	87.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	87.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	87.3
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	87.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	86.92
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	86.74
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	84.92
2kat_A	115	Uncharacterized protein; NESG, structure, structur	84.62
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	83.42
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	83.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	82.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	80.76
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	80.01

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.92  E-value=4.8e-26  Score=238.65  Aligned_cols=152  Identities=13%  Similarity=0.043  Sum_probs=131.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCC---------hhHHHHHHHHHHhcCCCCCCCcc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGN---------TDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGr---------VDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      +.+|++|||.|++++|+++|++|.+ .|..||++|||+||++||+.|.         +++|+++|++|...|+.||.+||
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            5679999999999999999999997 5789999999999999998776         68899999999999999999999


Q ss_pred             -cccccc------------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch-
Q 047498          141 -TLVDRW------------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT-  200 (566)
Q Consensus       141 -aLi~~~------------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t-  200 (566)
                       +++.++                  ..+.||++|||+||+|||+.|++++|.++|++|.+.|+.| |++|||+||+++. 
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~  187 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhh
Confidence             666654                  1158999999999999999999999999999999999999 8999999999764 


Q ss_pred             ---hhHHHHhhcccC--cce-------eeeccccc
Q 047498          201 ---CLIAVAVAQPQH--GIQ-------IVSCAKCR  223 (566)
Q Consensus       201 ---C~~A~aV~Qpq~--Giq-------lV~c~~cR  223 (566)
                         .++|.++++.++  |++       ++.+.+|+
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence               238888888554  554       25555554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.92  E-value=1.8e-25  Score=254.43  Aligned_cols=113  Identities=10%  Similarity=0.122  Sum_probs=105.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhc--CCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKR--SGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er--~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      |+||+||||+|++++|.++|++|.+.  .|..||++|||+||+||||.|++++|+++|++|.+.|+              
T Consensus       131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~--------------  196 (1134)
T 3spa_A          131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL--------------  196 (1134)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------
Confidence            89999999999999999999988631  36789999999999999999999999999999999999              


Q ss_pred             cCCCChHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          148 WSRPDVSVYTSLVQSLAASLKV-SDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       148 w~~PDVVTYNTLIdGLCKsGRV-dEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                        .||++|||+||+||||.|+. ++|.++|++|.++||.| |+||||+++++.
T Consensus       197 --~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~~  246 (1134)
T 3spa_A          197 --TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEE  246 (1134)
T ss_dssp             --CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCHH
T ss_pred             --CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccChh
Confidence              59999999999999999995 78999999999999999 899999999853

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.87  E-value=1.4e-22  Score=212.41  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=108.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      |+||++||++|++++|+++|++|.+ .|..||++|||+||+|||+.|++++|.++|++|.+.|+                
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~----------------  171 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV----------------  171 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------
Confidence            7999999999999999999999996 57899999999999999999999999999999999999                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      .||.+|||+||++|||.|++++|.++|++|.+.|+.| +..||++|++.+
T Consensus       172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F  220 (501)
T 4g26_A          172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWF  220 (501)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999 899999999865

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.79  E-value=3.6e-20  Score=211.34  Aligned_cols=97  Identities=9%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRS---SFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLID  177 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~s---rG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLe  177 (566)
                      -.+|||+||+||||.|++++|+++|++|.+   +|+                .||++|||+||+||||.|++++|+++|+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----------------~PdvvTYNtLI~Glck~G~~~eA~~Lf~  189 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----------------LLTLDMYNAVMLGWARQGAFKELVYVLF  189 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----------------TCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----------------CCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            346899999999999999999999998874   477                5999999999999999999999999999


Q ss_pred             HHHhCCCCCCCcccccceeccchhh------HHHHhhcc--cCcce
Q 047498          178 DISRVGVSPGEEVPFGKVVRCPTCL------IAVAVAQP--QHGIQ  215 (566)
Q Consensus       178 EM~~rGcsPdDvVTYntLI~C~tC~------~A~aV~Qp--q~Giq  215 (566)
                      +|.++||.| |+||||+||+|+ |+      +|..+++.  .+|+.
T Consensus       190 eM~~~G~~P-DvvTYntLI~gl-cK~G~~~e~A~~Ll~EM~~kG~~  233 (1134)
T 3spa_A          190 MVKDAGLTP-DLLSYAAALQCM-GRQDQDAGTIERCLEQMSQEGLK  233 (1134)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCCCC-cHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCC
Confidence            999999999 899999999987 53      45667663  34664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.96  E-value=1.9e-09  Score=107.98  Aligned_cols=139  Identities=11%  Similarity=-0.036  Sum_probs=102.9

Q ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc
Q 047498           68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW  146 (566)
Q Consensus        68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~  146 (566)
                      .-+.+.+.+++.|++++|.++|+++.+.  ..-+..+|+.++.+|++.|+.++|+++|++|...+. .+..+| .+...+
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  451 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQH  451 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence            4467889999999999999999999742  223677899999999999999999999999987643 233333 221111


Q ss_pred             -----------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCC-cccccceeccch----
Q 047498          147 -----------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV----GVSPGE-EVPFGKVVRCPT----  200 (566)
Q Consensus       147 -----------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r----GcsPdD-vVTYntLI~C~t----  200 (566)
                                       .....|..+|+.+++.|++.|++++|+++|++|.+.    |..|++ ..+|+.+..++.    
T Consensus       452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  531 (597)
T 2xpi_A          452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM  531 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence                             112357889999999999999999999999999887    888843 678888887653    


Q ss_pred             hhHHHHhhc
Q 047498          201 CLIAVAVAQ  209 (566)
Q Consensus       201 C~~A~aV~Q  209 (566)
                      .++|..+++
T Consensus       532 ~~~A~~~~~  540 (597)
T 2xpi_A          532 YDAAIDALN  540 (597)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            125655544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.91  E-value=3.3e-09  Score=106.18  Aligned_cols=131  Identities=10%  Similarity=-0.036  Sum_probs=72.4

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc-----
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW-----  146 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~-----  146 (566)
                      ++.|++.|++++|.++|++|.+.   .+|..+|+.++.+|++.|+.++|+++|++|...+.. +..++ .+..++     
T Consensus       279 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  354 (597)
T 2xpi_A          279 LNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGE  354 (597)
T ss_dssp             SCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTC
T ss_pred             HHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCC
Confidence            44555555555555555555421   245555555555555555555555555555543321 11111 100000     


Q ss_pred             ------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch----hhHHHHhhc
Q 047498          147 ------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT----CLIAVAVAQ  209 (566)
Q Consensus       147 ------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t----C~~A~aV~Q  209 (566)
                                  +....|+.+|+.|++.|++.|++++|+++|++|.+  ..|++..+|+.+++++.    .++|..+++
T Consensus       355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  431 (597)
T 2xpi_A          355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYT  431 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                        00124677888888888888888888888888876  35656777887777653    125555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.26  E-value=4.3e-06  Score=79.78  Aligned_cols=109  Identities=12%  Similarity=0.078  Sum_probs=74.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+++.|++++|.+.|+++.+.  ..-+..+|+.+...+++.|+.++|.+.|+++....                 
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------  301 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----------------  301 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------
Confidence            35556677777777777777777642  11234567777777777777777777777776542                 


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      ..|..+|+.+...+++.|++++|+++|+++.+.  .|++..+|..+..++
T Consensus       302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  349 (388)
T 1w3b_A          302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVL  349 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence            256778888888888888888888888888763  565666666666554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.13  E-value=7.6e-06  Score=78.06  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+++.|++++|.+.|+++.+.  ...+..+|+.+...+++.|+.++|+++|+++....                 
T Consensus       275 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------  335 (388)
T 1w3b_A          275 CNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-----------------  335 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Confidence            56778899999999999999999853  34578899999999999999999999999997542                 


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                      ..+..+|+.|...|++.|+.++|++.|+++.+  ..|++.
T Consensus       336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~  373 (388)
T 1w3b_A          336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFA  373 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCH
Confidence            24678999999999999999999999999987  578543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.07  E-value=3.8e-05  Score=59.69  Aligned_cols=106  Identities=11%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+...+.+.|++++|.++|.++.+.  ...+...|+.+...+.+.|+.++|.++|+++...+.                 
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------   66 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------   66 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----------------
Confidence            4556677889999999999988742  223566788888889999999999999998876542                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      .+...|..+...+++.|+.++|++.|+++.+..  |++...|..+..
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~  111 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGN  111 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence            456778888888888899999999988888753  433334433333

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.07  E-value=4.1e-05  Score=59.49  Aligned_cols=95  Identities=12%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+...|+.++|.+.|.++...  ...+...|..+...+++.|+.++|.++|+++.....                
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------  100 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----------------  100 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------------
Confidence            44566778899999999999999752  223567789999999999999999999999987642                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                       .+..+|..+...+++.|+.++|.+.|+++....
T Consensus       101 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A          101 -RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             -TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             -CChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence             467889999999999999999999999998753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.04  E-value=6.6e-05  Score=58.16  Aligned_cols=94  Identities=12%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+.+.|++++|.++|.++....  ..+...|+.+...+.+.|+.++|+.+|+++.....                
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------------   74 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP----------------   74 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----------------
Confidence            345667889999999999999997532  23567889999999999999999999999987642                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                       .+..+|..+...+.+.|+.++|.+.|+++.+.
T Consensus        75 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           75 -NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence             46788999999999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.90  E-value=8e-05  Score=63.82  Aligned_cols=97  Identities=10%  Similarity=-0.017  Sum_probs=53.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+...+.+.|++++|.+.|++..+.  ..-+...|..+...+.+.|+.++|+++|+++.....                 
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------   73 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-----------------   73 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----------------
Confidence            3444555666666666666665532  112344556666666666666666666666554321                 


Q ss_pred             CChHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 047498          151 PDVSVYTSLVQSLAAS-LKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       151 PDVVTYNTLIdGLCKs-GRVdEAlkLLeEM~~rGcsP  186 (566)
                      .+..+|..+...+.+. |+.++|++.|+++.+.+..|
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (225)
T 2vq2_A           74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP  110 (225)
T ss_dssp             TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred             CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence            2445555555566666 66666666666655533334

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.84  E-value=0.00012  Score=70.50  Aligned_cols=108  Identities=11%  Similarity=0.021  Sum_probs=91.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+.+.|++++|+++|+++.+.  ...+...|+.+..++++.|+.++|++.|+++...+.                
T Consensus        30 ~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----------------   91 (450)
T 2y4t_A           30 LELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM----------------   91 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------
Confidence            56778899999999999999999852  234688999999999999999999999999987653                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---ccccceecc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE---VPFGKVVRC  198 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv---VTYntLI~C  198 (566)
                       -+..+|+.+...|.+.|+.++|++.|+++.+.  .|++.   ..+..+++.
T Consensus        92 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           92 -DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHH
Confidence             46889999999999999999999999999874  56555   666666543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.79  E-value=6.6e-05  Score=72.18  Aligned_cols=126  Identities=10%  Similarity=-0.023  Sum_probs=91.3

Q ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC----cc-ccc
Q 047498           69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE----NG-TLV  143 (566)
Q Consensus        69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv----TY-aLi  143 (566)
                      -..+...+.+.|+.++|++.|+++.+.  ..-+...|+.+...|.+.|+.++|.++|+++....  |+..    .+ .+.
T Consensus        63 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~  138 (450)
T 2y4t_A           63 YYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLI  138 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHH
Confidence            356677788899999999999998753  22356788899999999999999999999988643  3321    11 110


Q ss_pred             c------------------cc-----------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccc
Q 047498          144 D------------------RW-----------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGK  194 (566)
Q Consensus       144 ~------------------~~-----------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYnt  194 (566)
                      .                  .+           .....+..+|+.+.+.|.+.|+.++|++.|+++.+.  .|++..+|+.
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~  216 (450)
T 2y4t_A          139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYK  216 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            0                  00           112347888999999999999999999999998875  4656777777


Q ss_pred             eeccch
Q 047498          195 VVRCPT  200 (566)
Q Consensus       195 LI~C~t  200 (566)
                      +..++.
T Consensus       217 l~~~~~  222 (450)
T 2y4t_A          217 ISTLYY  222 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.79  E-value=7.4e-05  Score=66.27  Aligned_cols=96  Identities=10%  Similarity=-0.012  Sum_probs=49.9

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+...|++++|.+.|++..+.  ..-+...|..+...+.+.|+.++|.+.|+++.....                 .
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------~  103 (252)
T 2ho1_A           43 LGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-----------------R  103 (252)
T ss_dssp             HHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------T
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------------C
Confidence            334455566666666666655431  112344555566666666666666666666554321                 2


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                      +...|..+...+.+.|+.++|+++|+++...+..|
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  138 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP  138 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc
Confidence            34445555555555555555555555555433344

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.75  E-value=7.9e-05  Score=70.23  Aligned_cols=109  Identities=16%  Similarity=0.085  Sum_probs=87.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +...+.+.|++++|.+.|+++.+......+...|+.+...+.+.|+.++|++.|++......                 .
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----------------~  245 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-----------------E  245 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------T
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------C
Confidence            46678899999999999999985322223678999999999999999999999999987632                 4


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      +..+|+.|...+.+.|+.++|++.|++..+.  .|++...|..+-.++
T Consensus       246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          246 DYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence            6889999999999999999999999999885  576667777766654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.67  E-value=0.00033  Score=57.74  Aligned_cols=109  Identities=12%  Similarity=0.022  Sum_probs=80.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+.+.|+.++|.+.+++..+.  ...+...|..+...+.+.|+.++|.+.|+++.....                
T Consensus        46 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------------  107 (186)
T 3as5_A           46 LHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP----------------  107 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc----------------
Confidence            45566677888888888888888642  223566778888888888888888888888876532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                       .+...|..+...+.+.|+.++|++.|++..+..  |++...|..+..++
T Consensus       108 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~  154 (186)
T 3as5_A          108 -INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSY  154 (186)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             -HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHH
Confidence             467778888888899999999999998887763  54555555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.62  E-value=0.00086  Score=57.36  Aligned_cols=105  Identities=8%  Similarity=-0.103  Sum_probs=60.9

Q ss_pred             HHHHHHcC-CCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           72 LLSRVSGA-KDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        72 LIrGLCKA-GrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      +...+.+. |++++|.+.|+++.+ .+..| +...|..+...+.+.|+.++|++.|+++....                 
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------  143 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-----------------  143 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence            33444455 555555555555543 11111 23444555555555555555555555554332                 


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCccccccee
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP-GEEVPFGKVV  196 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP-dDvVTYntLI  196 (566)
                      .-+...|..+...+.+.|+.++|.+.|+++.+..  | ++...|..+.
T Consensus       144 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~  189 (225)
T 2vq2_A          144 PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGW  189 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence            2357788889999999999999999999887753  3 3444454433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.62  E-value=0.00018  Score=69.00  Aligned_cols=115  Identities=11%  Similarity=0.096  Sum_probs=74.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc-------
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW-------  146 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~-------  146 (566)
                      ..+++.|+.++|++.|++ .      .+...+..+...+++.|+.++|.+.|++|....  |+..-+.+..+|       
T Consensus       109 ~~~~~~g~~~~Al~~l~~-~------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~  179 (291)
T 3mkr_A          109 SIYFYDQNPDAALRTLHQ-G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGG  179 (291)
T ss_dssp             HHHHHTTCHHHHHHHHTT-C------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHCCCHHHHHHHHhC-C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCc
Confidence            556677777777777766 1      355567777777777777777777777777553  332111000000       


Q ss_pred             --------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          147 --------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       147 --------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                                    .....|...|+.+-..+++.|++++|.+.|++....  .|++.-+++.++.+.
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLS  244 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence                          012457788888888888888888888888887764  466666666666543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00039  Score=67.42  Aligned_cols=102  Identities=8%  Similarity=-0.051  Sum_probs=85.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      +.+.+.|++++|++.|.++...   .||...|..+..++.+.|+.++|++.|+++.+...                 -+.
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~   73 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-----------------DYS   73 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-----------------CCH
T ss_pred             HHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-----------------HHH
Confidence            4578899999999999999853   27999999999999999999999999999987642                 456


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      .+|..+...+.+.|+.++|++.|+++.+.+  |.+...+..++.
T Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~  115 (514)
T 2gw1_A           74 KVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLE  115 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHH
Confidence            799999999999999999999999999876  323344444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.60  E-value=0.00058  Score=60.50  Aligned_cols=61  Identities=5%  Similarity=-0.123  Sum_probs=49.6

Q ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      -..+-..+.+.|++++|.+.|++..+..  .-+...|..+...+.+.|+.++|+++|+++...
T Consensus        74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  134 (252)
T 2ho1_A           74 HAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD  134 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence            3456677888999999999999987522  236678899999999999999999999998873

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.50  E-value=0.00098  Score=54.88  Aligned_cols=95  Identities=11%  Similarity=0.011  Sum_probs=80.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+.+.|++++|.+.|++..+.  ...+...|..+...+.+.|+.++|.+.|++......                
T Consensus        80 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------------  141 (186)
T 3as5_A           80 TVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP----------------  141 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc----------------
Confidence            45666788899999999999999752  224667889999999999999999999999887642                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                       .+...|..+...+.+.|+.++|.+.+++..+..
T Consensus       142 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          142 -NEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence             467889999999999999999999999987753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.48  E-value=0.00057  Score=59.61  Aligned_cols=61  Identities=8%  Similarity=-0.039  Sum_probs=45.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF  132 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG  132 (566)
                      ..+-..+.+.|+.++|.+.|++..+.  ..-+...|..+...+.+.|+.++|+++|+++....
T Consensus        61 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           61 INFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            44556677788888888888888642  12356677888888888888888888888887654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.46  E-value=0.00083  Score=64.32  Aligned_cols=110  Identities=9%  Similarity=-0.016  Sum_probs=63.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc---
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW---  146 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~---  146 (566)
                      .+.+.+-..|+.++|+.-|+..     ..|+..++..+...+++.|+.++|++.|++|...++.|+...+ ......   
T Consensus        39 ~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~  113 (291)
T 3mkr_A           39 FLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY  113 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence            3445555555555555544331     1245555555555555555555555555555555544443322 100000   


Q ss_pred             --cc--------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498          147 --KW--------SRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       147 --rw--------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd  187 (566)
                        ++        -..+...|..+...|++.|+.++|.+.|++|.+..  |+
T Consensus       114 ~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~  162 (291)
T 3mkr_A          114 DQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED  162 (291)
T ss_dssp             TTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             CCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence              00        02567788888889999999999999999988764  63

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.45  E-value=0.0011  Score=58.88  Aligned_cols=97  Identities=9%  Similarity=-0.184  Sum_probs=82.0

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+...|++++|.+.|++..+.  ..-+...|+.+-..+++.|+.++|++.|++......                
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------------  108 (275)
T 1xnf_A           47 YERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP----------------  108 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc----------------
Confidence            45667788899999999999999753  223678899999999999999999999999987532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd  187 (566)
                       .+...|..+-..+.+.|+.++|++.|+++.+.  .|+
T Consensus       109 -~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~  143 (275)
T 1xnf_A          109 -TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPN  143 (275)
T ss_dssp             -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             -cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC
Confidence             36788999999999999999999999999884  463

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.44  E-value=0.0019  Score=49.22  Aligned_cols=97  Identities=8%  Similarity=-0.063  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|...|++..+..  .-+...|..+-..+.+.|+.++|++.|++..+....               .
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------------~   73 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED---------------E   73 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC---------------T
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------------c
Confidence            34455778999999999999987522  235677889999999999999999999998865320               0


Q ss_pred             CChHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC
Q 047498          151 PDVSVYTSLVQSLAAS-LKVSDALRLIDDISRVGV  184 (566)
Q Consensus       151 PDVVTYNTLIdGLCKs-GRVdEAlkLLeEM~~rGc  184 (566)
                      -+...|..+-..+.+. |+.++|++.|++.....-
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence            1578899999999999 999999999999987653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.43  E-value=0.0024  Score=50.39  Aligned_cols=93  Identities=13%  Similarity=-0.019  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|.+.|++..+.  ..-+...|..+-..+.+.|+.++|++.|++......                 
T Consensus        21 ~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------   81 (133)
T 2lni_A           21 NKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----------------   81 (133)
T ss_dssp             HHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------
Confidence            3455678899999999999999742  223677889999999999999999999999886532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      .+...|..+-..+.+.|+.++|++.|++..+.
T Consensus        82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            46778999999999999999999999998774

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.40  E-value=0.00091  Score=63.01  Aligned_cols=93  Identities=9%  Similarity=0.004  Sum_probs=80.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|.+.|+++.+.  ..-+...|+.+...+.+.|+.++|++.|+++.....                 
T Consensus        70 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------  130 (365)
T 4eqf_A           70 EEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-----------------  130 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------------
Confidence            3456788899999999999999753  224678899999999999999999999999987632                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      -+..+|+.|...|.+.|+.++|++.|+++.+.
T Consensus       131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  162 (365)
T 4eqf_A          131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQ  162 (365)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            45889999999999999999999999999884

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.38  E-value=0.0016  Score=60.61  Aligned_cols=94  Identities=12%  Similarity=0.046  Sum_probs=82.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|++.|+++.+.  ..-+...|..+-..+.+.|+.++|++.|+++.....                 
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----------------  129 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-----------------  129 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-----------------
Confidence            4556788999999999999999852  234677899999999999999999999999987642                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      .+..+|..+...+.+.|+.++|++.|+++....
T Consensus       130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A          130 DNQTALMALAVSFTNESLQRQACEILRDWLRYT  162 (368)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            478899999999999999999999999999854

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.37  E-value=0.0027  Score=49.37  Aligned_cols=97  Identities=10%  Similarity=-0.010  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+...|++++|.+.|++..+..  ..+...|..+-..+.+.|+.++|++.|++......                 
T Consensus        17 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------   77 (131)
T 2vyi_A           17 TEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----------------   77 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------------
Confidence            45566778999999999999987422  23667889999999999999999999999886532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      .+...|..+-..+.+.|+.++|++.|++..+.  .|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  113 (131)
T 2vyi_A           78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--DPDN  113 (131)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--Cccc
Confidence            45778999999999999999999999998876  4543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.36  E-value=0.00067  Score=60.30  Aligned_cols=103  Identities=11%  Similarity=-0.095  Sum_probs=83.4

Q ss_pred             cCCCHHHHHHHHHHHhhcCCC--CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498           78 GAKDASEVLEIVAESSKRSGG--VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV  155 (566)
Q Consensus        78 KAGrlDEAleLL~EM~er~Gg--~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT  155 (566)
                      ..|++++|++.|+++.+....  .-+...|..+-..+.+.|+.++|++.|++......                 .+..+
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~   79 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-----------------DMPEV   79 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------------CCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-----------------CcHHH
Confidence            358899999999999853111  12567889999999999999999999999987642                 46889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          156 YTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       156 YNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      |..|-..+++.|++++|++.|++..+.  .|++...|..+-.++
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~  121 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHHHH
Confidence            999999999999999999999999885  565556666555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.35  E-value=0.0017  Score=58.80  Aligned_cols=95  Identities=7%  Similarity=-0.093  Sum_probs=79.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+...+.+.|++++|.+.|++..+.  ..-+...|+.+...+.+.|+.++|++.|+++.....                
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------  237 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP----------------  237 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------------
Confidence            45667788899999999999998742  223567889999999999999999999999876532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                       .+..+|..+...+.+.|+.++|.+.|++..+..
T Consensus       238 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  270 (327)
T 3cv0_A          238 -GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ  270 (327)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence             467889999999999999999999999998754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.35  E-value=0.0032  Score=48.23  Aligned_cols=92  Identities=11%  Similarity=-0.060  Sum_probs=77.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+...|++++|.+.|.+.....  .-+...|..+-..+.+.|+.++|++.|++......                 .
T Consensus        10 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~   70 (118)
T 1elw_A           10 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----------------D   70 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------T
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----------------c
Confidence            4456778999999999999997422  23667788899999999999999999999886532                 3


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +...|..+-..+.+.|+.++|.+.|++..+.
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            5778999999999999999999999998864

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.32  E-value=0.0017  Score=60.42  Aligned_cols=94  Identities=5%  Similarity=-0.134  Sum_probs=67.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|++++|.+.|.+..+.  ..-+...|+.+...+.+.|+.++|++.|+++....                 
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------  281 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-----------------  281 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence            34555666777777777777776532  11245567777777777777777777777766542                 


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..+..+|..|-..+.+.|+.++|++.|++..+.
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM  314 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            246788999999999999999999999988764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.27  E-value=0.0023  Score=55.73  Aligned_cols=107  Identities=13%  Similarity=0.080  Sum_probs=75.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+...+.+.|++++|.+.|.+..+.  ...+...|..+...+.+.|+.++|++.|+++.....                 
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------  156 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-----------------  156 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------
Confidence            4456677788888888888887642  123556677788888888888888888888775532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceecc
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C  198 (566)
                      .+...|..+...+.+.|+.++|++.|++..+.  .|++...|..+..+
T Consensus       157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~  202 (243)
T 2q7f_A          157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVT  202 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            35677888888888888888888888887765  34444445444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.23  E-value=0.011  Score=47.58  Aligned_cols=93  Identities=11%  Similarity=-0.081  Sum_probs=78.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC----hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLT----VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDR  145 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD----vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~  145 (566)
                      ..+-..+.+.|++++|.+.|.+..+.   .|+    ...|..+-..+.+.|+.++|++.|++......            
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------   96 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG------------   96 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS------------
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc------------
Confidence            34455677899999999999999842   355    67788899999999999999999999876532            


Q ss_pred             cccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          146 WKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       146 ~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                           .+...|..+-..+.+.|+.++|++.|++..+.
T Consensus        97 -----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           97 -----GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                 36778889999999999999999999998874

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.22  E-value=0.0021  Score=50.16  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+...|++++|...|.+..+.  ...+...|..+-..+.+.|+.++|+..|++.......              ..
T Consensus         9 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~   72 (131)
T 1elr_A            9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE--------------NR   72 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------ST
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc--------------cc
Confidence            3445678899999999999999753  2236677899999999999999999999998765320              01


Q ss_pred             CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          151 PD----VSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       151 PD----VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      ++    ..+|..+-..+.+.|+.++|.+.|++..+..
T Consensus        73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            22    7789999999999999999999999998854

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.20  E-value=0.0016  Score=54.73  Aligned_cols=95  Identities=17%  Similarity=0.014  Sum_probs=80.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      +.+.+.|++++|++.|.+..+..  .-+...|.-+=.+|.+.|+.++|++.|++..+...                 -+.
T Consensus        21 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~   81 (126)
T 4gco_A           21 NEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-----------------KFI   81 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----------------hhh
Confidence            35788999999999999987522  24677889999999999999999999999876532                 467


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                      ..|..+-..+.+.|+.++|++.|++..+  +.|++.
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~  115 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNE  115 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCH
Confidence            7899999999999999999999999887  467553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.18  E-value=0.0024  Score=57.90  Aligned_cols=116  Identities=8%  Similarity=-0.060  Sum_probs=70.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|.+.|++..+.  ..-+...|+.+...+.+.|+.++|.+.|++.....-.        .........
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~  234 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA--------IGNEVTVDK  234 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------TSCSCTTTT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh--------ccccccccH
Confidence            344455566666666666665531  1223455566666666666666666666665543110        000000124


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      +..+|+.+-..+.+.|+.++|++.|++..+.  .|++...|..+-.++
T Consensus       235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~  280 (330)
T 3hym_B          235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIH  280 (330)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHH
Confidence            4678999999999999999999999999875  465556666665554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.17  E-value=0.0023  Score=58.01  Aligned_cols=109  Identities=6%  Similarity=-0.036  Sum_probs=82.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      -.+...+...|++++|+++|+++.+.  ...+...+..+...+.+.|+.++|+.+|+++.....                
T Consensus        26 ~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------------   87 (330)
T 3hym_B           26 VSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP----------------   87 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----------------
Confidence            45667788889999999999998753  223455677788999999999999999999987532                


Q ss_pred             CCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          150 RPDVSVYTSLVQSLAASL-KVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsG-RVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                       -+...|..+-..+.+.| +.++|++.|++..+.  .|++...|..+..++
T Consensus        88 -~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~  135 (330)
T 3hym_B           88 -SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSF  135 (330)
T ss_dssp             -TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence             35677888888888888 888888888888764  354455555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0043  Score=54.18  Aligned_cols=95  Identities=13%  Similarity=-0.064  Sum_probs=78.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|++++|.+.|++..+.  ..-+...|..+-..+.+.|+.++|++.|++......                
T Consensus       143 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----------------  204 (258)
T 3uq3_A          143 RLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP----------------  204 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH----------------
Confidence            34556778899999999999999752  223577889999999999999999999999876532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                       .+..+|..+-..+.+.|+.++|++.|++..+..
T Consensus       205 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          205 -NFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence             457889999999999999999999999887643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.11  E-value=0.0041  Score=56.30  Aligned_cols=92  Identities=11%  Similarity=-0.025  Sum_probs=79.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|.++|+++.+.  ..-+...|..+...+.+.|+.++|.+.|+++.....                 .
T Consensus        27 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~   87 (327)
T 3cv0_A           27 EGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----------------K   87 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------T
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----------------C
Confidence            345678899999999999999753  223677889999999999999999999999987642                 4


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +..+|..+...+.+.|+.++|++.|+++.+.
T Consensus        88 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  118 (327)
T 3cv0_A           88 DIAVHAALAVSHTNEHNANAALASLRAWLLS  118 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7888999999999999999999999999875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.11  E-value=0.0064  Score=48.47  Aligned_cols=92  Identities=10%  Similarity=-0.016  Sum_probs=73.5

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+.+.|++++|.+.|.+..+..   |+.    ..+..+-..+.+.|+.++|+..|++.......               
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---------------   71 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---------------   71 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---------------
Confidence            45678999999999999997532   332    36777888999999999999999998876321               


Q ss_pred             CCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          150 RPD-VSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      .|. ...|..+-..+.+.|+.++|++.|++.....
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            111 4667888889999999999999999998864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0074  Score=48.75  Aligned_cols=90  Identities=13%  Similarity=-0.031  Sum_probs=76.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+.+.|++++|++.|.+..+..  .-+...|.-+-.++.+.|+.++|++.|++..+...                 -+.
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~   72 (126)
T 3upv_A           12 KEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----------------NFV   72 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CcH
Confidence            45778999999999999987522  23567899999999999999999999999886532                 357


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..|..+-..+.+.|+.++|++.|++..+.
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            78999999999999999999999988774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.98  E-value=0.0094  Score=50.64  Aligned_cols=97  Identities=7%  Similarity=-0.119  Sum_probs=80.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|++.|++..+..  .-+...|+.+-..|.+.|+.++|+..|++......                 
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----------------   76 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-----------------   76 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Confidence            34456778999999999999997532  22677889999999999999999999999886532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      -+...|..+-..|.+.|+.++|++.|++..+.  .|++
T Consensus        77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~  112 (164)
T 3sz7_A           77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEA--EGNG  112 (164)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSS
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCc
Confidence            35788999999999999999999999998874  3643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.96  E-value=0.0069  Score=50.72  Aligned_cols=91  Identities=7%  Similarity=-0.194  Sum_probs=75.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      -..+.+.|++++|.+.|++.....  .-|...|..+=..+.+.|+.++|+..|++......                 -|
T Consensus        25 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~   85 (142)
T 2xcb_A           25 GFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-----------------NE   85 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TC
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CC
Confidence            345778999999999999987422  23566788888899999999999999999887643                 35


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ...|..+-..|.+.|+.++|++.|+...+.
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            667888899999999999999999998765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0043  Score=54.14  Aligned_cols=94  Identities=10%  Similarity=0.042  Sum_probs=78.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|++.|.+..+. .  .+...|..+-..+.+.|+.++|++.|++.....-.              ..|
T Consensus        11 ~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~   73 (258)
T 3uq3_A           11 EGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE--------------MRA   73 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------TTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--------------ccc
Confidence            445677899999999999999863 3  67889999999999999999999999998764210              012


Q ss_pred             C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 D----VSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 D----VVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +    ..+|..+-..+.+.|+.++|++.|++..+.
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  108 (258)
T 3uq3_A           74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE  108 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            2    688999999999999999999999999884

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.94  E-value=0.0069  Score=52.51  Aligned_cols=89  Identities=12%  Similarity=-0.096  Sum_probs=77.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      -..+.+.|++++|++.|.+...     |+...|+.+-..+.+.|+.++|++.|++......                 -+
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----------------~~   70 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-----------------HL   70 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TC
T ss_pred             HHHHHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------cc
Confidence            3456789999999999998862     5778999999999999999999999999876532                 46


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      ...|..+-..+.+.|+.++|++.|++..+..
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            7889999999999999999999999998853

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.92  E-value=0.0098  Score=47.89  Aligned_cols=93  Identities=12%  Similarity=-0.051  Sum_probs=77.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|...|.+.....  .-+...|..+-..+.+.|+.++|+..|++......                 
T Consensus        14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----------------   74 (137)
T 3q49_B           14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----------------   74 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------------
Confidence            34456778999999999999987422  23567889999999999999999999999887542                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      -+...|..+-..+.+.|+.++|++.|++..+.
T Consensus        75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35778999999999999999999999998774

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.89  E-value=0.0018  Score=57.02  Aligned_cols=121  Identities=9%  Similarity=-0.024  Sum_probs=86.8

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcC-----CC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRS-----GG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~-----Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi  143 (566)
                      ..+-..+...|++++|.+.|.+..+..     +. .....+|+.+-..+.+.|+.++|++.|++.....-+        .
T Consensus        47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~  118 (283)
T 3edt_B           47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK--------V  118 (283)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--------H
Confidence            455667888999999999999886321     11 234567899999999999999999999998754100        0


Q ss_pred             cccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCCcccccceeccc
Q 047498          144 DRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV------GVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       144 ~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r------GcsPdDvVTYntLI~C~  199 (566)
                      .+ ........+|+.|-..+.+.|++++|.+.|++..+.      +-.|+....|..+-.++
T Consensus       119 ~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  179 (283)
T 3edt_B          119 LG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY  179 (283)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             cC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            00 000124778999999999999999999999998876      33453445555555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.88  E-value=0.0063  Score=54.29  Aligned_cols=106  Identities=9%  Similarity=-0.034  Sum_probs=79.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-  152 (566)
                      ..+.+.|++++|++.|++..+..  .-+...|..+-..+.+.|+.++|++.|++....+-                .|+ 
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------~~~~   72 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN----------------ATKA   72 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----------------TTTC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC----------------chhH
Confidence            45778999999999999987522  12444788889999999999999999999887432                233 


Q ss_pred             -hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          153 -VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       153 -VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                       ...|..+-..+.+.|+.++|++.|++..+.  .|++...|..+-.++
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~  118 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYF  118 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHH
Confidence             234888888899999999999999988874  454445555544443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.87  E-value=0.002  Score=57.98  Aligned_cols=121  Identities=8%  Similarity=-0.053  Sum_probs=86.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcC-----C-CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRS-----G-GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~-----G-g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi  143 (566)
                      ..+-..+...|++++|.+.|++..+..     + .......|+.+-..+.+.|+.++|.+.|++.....-+        .
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--------~  144 (311)
T 3nf1_A           73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK--------V  144 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--------H
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH--------h
Confidence            455667888999999999999886421     1 1234567899999999999999999999998764100        0


Q ss_pred             cccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCCcccccceeccc
Q 047498          144 DRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV------GVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       144 ~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r------GcsPdDvVTYntLI~C~  199 (566)
                      .+ ....-+...|+.+-..+.+.|++++|+++|++....      +-.|+....|..+-.++
T Consensus       145 ~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  205 (311)
T 3nf1_A          145 LG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY  205 (311)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH
T ss_pred             cC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            00 000124667899999999999999999999998775      44553444555555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.86  E-value=0.014  Score=47.89  Aligned_cols=98  Identities=15%  Similarity=-0.007  Sum_probs=79.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|.+.|.+..+..  .-+...|..+-..+.+.|+.++|++.|++......                 
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------------   78 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----------------   78 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------
Confidence            34455678999999999999987422  23577888999999999999999999999876532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                      .+...|..+-..+.+.|+.++|++.|++..+.  .|++.
T Consensus        79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~  115 (166)
T 1a17_A           79 KYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDK  115 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCH
Confidence            46778999999999999999999999999875  45433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.85  E-value=0.0054  Score=53.95  Aligned_cols=103  Identities=11%  Similarity=0.015  Sum_probs=78.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcC-----C-CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRS-----G-GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~-----G-g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi  143 (566)
                      ..+-..+...|++++|.+.|.+..+..     . ......+|+.+-..+.+.|+.++|.+.|++.....-.         
T Consensus        89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------  159 (283)
T 3edt_B           89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT---------  159 (283)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Confidence            455677889999999999999886320     1 1234677899999999999999999999998764100         


Q ss_pred             cccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          144 DRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       144 ~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                       ......| +..+|+.|-..+.+.|+.++|+++|++..+.
T Consensus       160 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          160 -RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             -HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             0000013 4678999999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.83  E-value=0.0093  Score=54.35  Aligned_cols=93  Identities=10%  Similarity=-0.042  Sum_probs=79.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|++.|++..+.  ..-+...|..+-..+.+.|+.++|++.|+++.....                 -
T Consensus         9 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------------~   69 (359)
T 3ieg_A            9 LGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-----------------D   69 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------T
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------C
Confidence            345678899999999999999752  223577899999999999999999999999987632                 3


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      +...|..+-..+.+.|+.++|++.|++..+..
T Consensus        70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  101 (359)
T 3ieg_A           70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN  101 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC
T ss_pred             cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            67889999999999999999999999998753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.0033  Score=60.98  Aligned_cols=108  Identities=14%  Similarity=0.011  Sum_probs=83.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|++++|.+.|.+..+..   |+...|..+...+.+.|+.++|++.|+++.....                
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------  301 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS----------------  301 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT----------------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc----------------
Confidence            355667888999999999999997532   4478899999999999999999999999986532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                       .+...|..+...+.+.|+.++|++.|++....  .|++...|..+..++
T Consensus       302 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~  348 (514)
T 2gw1_A          302 -NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLA  348 (514)
T ss_dssp             -TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHH
Confidence             35667778888888888888888888887764  454455555555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.73  E-value=0.013  Score=53.39  Aligned_cols=91  Identities=10%  Similarity=0.020  Sum_probs=79.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      -..+...|++++|++.|++..+.  ..-+...|..+-..+.+.|+.++|++.|+++.....                 .+
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~  187 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-----------------DN  187 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-----------------CC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----------------CC
Confidence            46788899999999999999752  224667899999999999999999999999986532                 47


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..+|..+...+.+.|+.++|.+.|++..+.
T Consensus       188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  217 (359)
T 3ieg_A          188 TEAFYKISTLYYQLGDHELSLSEVRECLKL  217 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            789999999999999999999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.72  E-value=0.0071  Score=54.31  Aligned_cols=103  Identities=9%  Similarity=0.001  Sum_probs=77.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcC-----CC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRS-----GG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~-----Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi  143 (566)
                      ..+-..+...|++++|.+.|.+..+..     +. .-....|+.+-..+.+.|+.++|+++|+++....-+         
T Consensus       115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------  185 (311)
T 3nf1_A          115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT---------  185 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Confidence            355667888999999999999886421     12 234566889999999999999999999998764100         


Q ss_pred             cccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          144 DRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       144 ~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                       ......| +..+|+.|-..+.+.|+.++|.+.|+++.+.
T Consensus       186 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          186 -KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             -TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             0000013 3568999999999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.72  E-value=0.0096  Score=52.67  Aligned_cols=91  Identities=8%  Similarity=-0.143  Sum_probs=76.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+.+.|++++|.+.|++.....  .-|...|..|=.++.+.|+.++|+..|++......                 -|.
T Consensus        44 ~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-----------------~~~  104 (151)
T 3gyz_A           44 YDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-----------------NDY  104 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----------------SCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-----------------CCc
Confidence            45678999999999999997532  23567788899999999999999999999986532                 356


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      ..|.-+=..|.+.|+.++|++.|+...+..
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            778889999999999999999999998854

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.71  E-value=0.014  Score=50.08  Aligned_cols=92  Identities=8%  Similarity=-0.104  Sum_probs=76.3

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|...|++.....  .-|...|..+=..+.+.|+.++|++.|++......                 -
T Consensus        27 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----------------~   87 (148)
T 2vgx_A           27 LAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-----------------X   87 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------T
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------C
Confidence            4456778999999999999987422  23667788888899999999999999999886532                 3


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      |...|.-+-..|.+.|+.++|++.|+...+.
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5677888899999999999999999988764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.70  E-value=0.0091  Score=53.26  Aligned_cols=107  Identities=7%  Similarity=0.014  Sum_probs=80.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      ..+-..+.+.|++++|++.|.+..+. ...++  ...|..+-..+.+.|+.++|++.|++......              
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~--------------  105 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT--------------  105 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--------------
Confidence            44556788899999999999999852 22222  22378899999999999999999999887532              


Q ss_pred             cCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccccccee
Q 047498          148 WSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVV  196 (566)
Q Consensus       148 w~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI  196 (566)
                         -+..+|..+-..+.+.|+.++|++.|++..+.  .|++...|..+-
T Consensus       106 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~  149 (272)
T 3u4t_A          106 ---TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELG  149 (272)
T ss_dssp             ---TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHH
T ss_pred             ---ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHH
Confidence               35567888888888888888888888888765  565544444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.65  E-value=0.006  Score=47.00  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ...|..+...+.+.|+.++|.++|+++.....                 .+..+|..+...+.+.|+.++|+++|+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            56788899999999999999999999987532                 4678899999999999999999999999988


Q ss_pred             CCCCCCCcccccceeccc
Q 047498          182 VGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       182 rGcsPdDvVTYntLI~C~  199 (566)
                      .  .|++..+|..+..++
T Consensus        72 ~--~~~~~~~~~~la~~~   87 (125)
T 1na0_A           72 L--DPNNAEAWYNLGNAY   87 (125)
T ss_dssp             H--CTTCHHHHHHHHHHH
T ss_pred             h--CCccHHHHHHHHHHH
Confidence            6  464555555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.64  E-value=0.0045  Score=50.16  Aligned_cols=88  Identities=9%  Similarity=-0.037  Sum_probs=68.9

Q ss_pred             cCCCHHHHHHHHHHHhhcCC--CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498           78 GAKDASEVLEIVAESSKRSG--GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV  155 (566)
Q Consensus        78 KAGrlDEAleLL~EM~er~G--g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT  155 (566)
                      ..|+.++|++.|++..+. +  ..-+...|..|-..+.+.|+.++|++.|++..+...                 -|...
T Consensus         2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~   63 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----------------NHQAL   63 (117)
T ss_dssp             -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CchHH
Confidence            468899999999999852 1  122456788899999999999999999999887643                 35778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          156 YTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       156 YNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      |..+-..|.+.|+.++|++.|++.....
T Consensus        64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           64 RVFYAMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            8889999999999999999999987753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.60  E-value=0.0064  Score=59.70  Aligned_cols=104  Identities=11%  Similarity=-0.001  Sum_probs=74.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+...|++++|.+.|.+..+.   .|+...|..+-..+.+.|+.++|++.|+++.....                 -+.
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~  310 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-----------------EYP  310 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-----------------TCH
T ss_pred             HHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-----------------CCH
Confidence            4566788999999999988752   25677788888888999999999999998876532                 345


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      .+|..+...+.+.|+.++|++.|++..+.  .|++...|..+..++
T Consensus       311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~  354 (537)
T 3fp2_A          311 PTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLL  354 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            56777777777777777777777777664  354445555555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.43  E-value=0.019  Score=56.27  Aligned_cols=110  Identities=11%  Similarity=-0.090  Sum_probs=67.3

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc---
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW---  146 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~---  146 (566)
                      .+-..+.+.|++++|.+.|.+..+..  .-+..+|..+-..+.+.|+.++|.+.|++....... +...+ .+...+   
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQ  357 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            34445566777777777777775321  124556777777777777777777777777654321 11111 000000   


Q ss_pred             --------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          147 --------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       147 --------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                                    ....-+...|+.+-..+.+.|+.++|++.|+++.+..
T Consensus       358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence                          0012356688888888888899999998888887754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=96.38  E-value=0.039  Score=47.73  Aligned_cols=112  Identities=9%  Similarity=-0.064  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      .-..+-..+.+.|++++|++.|.+..+..  .-+...|+.+-..+.+.|+.++|++.|++.....-.-....|.. .+..
T Consensus        39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  115 (213)
T 1hh8_A           39 ICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI-LGLQ  115 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG-GTBC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH-hccc
Confidence            33455667889999999999999987532  23567889999999999999999999999887532100001100 0000


Q ss_pred             cCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          148 WSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       148 w~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      . .| +...|..+-..+.+.|+.++|++.|++..+..
T Consensus       116 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A          116 F-KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             C-EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             c-CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            1 12 34678889999999999999999999998753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.38  E-value=0.015  Score=52.08  Aligned_cols=110  Identities=13%  Similarity=0.068  Sum_probs=85.3

Q ss_pred             hhHHHHHH--HHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHH----------------HHHHHHhcCChhHHHHHHHHH
Q 047498           68 VEEELLSR--VSGAKDASEVLEIVAESSKRSGGVLT-VDECCL----------------IINAAIDRGNTDLALSIFYAM  128 (566)
Q Consensus        68 ~~~aLIrG--LCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNs----------------LI~GlCKaGrVDeAlsLF~EM  128 (566)
                      .|..+-.|  +.+.|++++|++.|++..+.   .|+ ...|..                +-..+.+.|+.++|+..|++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34444444  45799999999999998742   133 344555                788899999999999999998


Q ss_pred             HhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          129 RSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       129 ~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      .+...                 -|...|..|-..+.+.|+.++|++.|++..+  ..|++.-.|..+-.++
T Consensus        81 l~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           81 LQKAP-----------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence            86632                 3678899999999999999999999999988  4687666666655444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.28  E-value=0.05  Score=46.24  Aligned_cols=96  Identities=10%  Similarity=-0.002  Sum_probs=76.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.++.++|.+.+.+....  ..-+...+..+-..+.+.|+.++|++.|++..+...                
T Consensus        77 ~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p----------------  138 (184)
T 3vtx_A           77 YILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP----------------  138 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc----------------
Confidence            34445667789999999998887642  123566788888889999999999999998876532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                       -|..+|..|-..|.+.|+.++|++.|++..+.  .|
T Consensus       139 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p  172 (184)
T 3vtx_A          139 -GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EE  172 (184)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TH
T ss_pred             -hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--Cc
Confidence             36778999999999999999999999998774  45

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.27  E-value=0.00062  Score=72.44  Aligned_cols=101  Identities=12%  Similarity=0.051  Sum_probs=9.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc-cccccc--
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG-TLVDRW--  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY-aLi~~~--  146 (566)
                      ..|...+.+.|++++|.+.|.+.       +|..+|..++++++..|+.++|++.|+..++. . ++..++ .++.++  
T Consensus        36 s~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~-~~~~i~~~Li~~Y~K  106 (449)
T 1b89_A           36 SQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A-RESYVETELIFALAK  106 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-C-ccchhHHHHHHHHHH
Confidence            46778888889999998888653       36668888899999999999999966555543 2 111111 111111  


Q ss_pred             --cc-------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          147 --KW-------SRPDVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       147 --rw-------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                        +|       -.||..+|+.+-+.|...|++++|+.+|..+
T Consensus       107 lg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a  148 (449)
T 1b89_A          107 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV  148 (449)
T ss_dssp             --CHHHHTTTTTCC----------------CTTTHHHHHHHT
T ss_pred             hCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence              00       1466666666666666666666666666655

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.27  E-value=0.021  Score=47.44  Aligned_cols=90  Identities=11%  Similarity=0.012  Sum_probs=74.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+.+.|++++|...|++..+..  .-+...|..+=..+.+.|+.++|+..|++......                 -+.
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----------------~~~   85 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----------------KDI   85 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCH
Confidence            45778999999999999997532  12566778888899999999999999999876532                 256


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..|..|-..+.+.|+.++|++.|++..+.
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            78889999999999999999999998763

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.16  E-value=0.027  Score=46.17  Aligned_cols=93  Identities=6%  Similarity=-0.097  Sum_probs=70.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|++++|.+.|.+..+.  ..-+...|..+-..+.+.|+.++|++.|++......                
T Consensus        51 ~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----------------  112 (166)
T 1a17_A           51 GNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP----------------  112 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----------------
Confidence            34555677899999999999998752  223567788899999999999999999999886643                


Q ss_pred             CCChHhHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 047498          150 RPDVSVYTS--LVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       150 ~PDVVTYNT--LIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                       -|...+..  +...+.+.|+.++|++.++....
T Consensus       113 -~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          113 -HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence             23334433  44447788999999999987644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.14  E-value=0.05  Score=48.04  Aligned_cols=94  Identities=12%  Similarity=-0.028  Sum_probs=77.1

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      .+.+.|++++|++.|.+..+. ...+|...|.-+-..+.+.|+.++|++.|++......                 -+..
T Consensus        16 ~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~   77 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-----------------NLAN   77 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------SHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-----------------chHH
Confidence            466799999999999998752 2225667777799999999999999999999886532                 3567


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          155 VYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       155 TYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                      .|..+-..+.+.|+.++|++.|++..+.  .|++
T Consensus        78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~  109 (228)
T 4i17_A           78 AYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGN  109 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCc
Confidence            8999999999999999999999999874  4643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=96.09  E-value=0.041  Score=49.51  Aligned_cols=103  Identities=15%  Similarity=0.092  Sum_probs=82.9

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +=..+.+.|++++|...|++..+.  ..-+...|..+-..+.+.|+.++|+..|++..+...                 -
T Consensus        11 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-----------------~   71 (217)
T 2pl2_A           11 LGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-----------------R   71 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------T
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------C
Confidence            344577899999999999999742  224667889999999999999999999999886532                 3


Q ss_pred             ChHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498          152 DVSVYTSLVQSLAAS-----------LKVSDALRLIDDISRVGVSPGEEVPFGKV  195 (566)
Q Consensus       152 DVVTYNTLIdGLCKs-----------GRVdEAlkLLeEM~~rGcsPdDvVTYntL  195 (566)
                      |...|..|-..+.+.           |+.++|++.|++..+.  .|++...|..+
T Consensus        72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~l  124 (217)
T 2pl2_A           72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQR  124 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence            567888888899999           9999999999999874  67655555433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.06  E-value=0.0021  Score=68.43  Aligned_cols=37  Identities=11%  Similarity=0.050  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceecc
Q 047498          155 VYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       155 TYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C  198 (566)
                      .|+-|.+.|++.|++++|.+.+..+       ++..||..++.+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~a  186 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFA  186 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHH
Confidence            5888888888888888888888887       244677776654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.02  E-value=0.05  Score=46.28  Aligned_cols=95  Identities=7%  Similarity=-0.020  Sum_probs=76.1

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHH-HHhcCCh--hHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINA-AIDRGNT--DLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~G-lCKaGrV--DeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      ..+-..+...|++++|.+.|++..+..  .-+...|..+-.. +.+.|+.  ++|.+.|++......             
T Consensus        48 ~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-------------  112 (177)
T 2e2e_A           48 ALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-------------  112 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-------------
Confidence            345566778999999999999987421  1255667777777 6789998  999999999887632             


Q ss_pred             ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          147 KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       147 rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                          -+...|..+-..+.+.|+.++|++.|++..+..
T Consensus       113 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          113 ----NEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             ----CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence                356788889999999999999999999998753

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.99  E-value=0.033  Score=47.68  Aligned_cols=100  Identities=10%  Similarity=0.050  Sum_probs=77.0

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      |=+-|.+.|++++|.+.|++..+..  .=+..+|+.+=..+.+.|+.++|+..|++..+..                  |
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------p   96 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN------------------P   96 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------T
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC------------------C
Confidence            3455778999999999999987422  1256788999999999999999999999987653                  5


Q ss_pred             -ChHhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCCccccc
Q 047498          152 -DVSVYTSLVQSLAASLKVSDALRL-IDDISRVGVSPGEEVPFG  193 (566)
Q Consensus       152 -DVVTYNTLIdGLCKsGRVdEAlkL-LeEM~~rGcsPdDvVTYn  193 (566)
                       |...|..|-..|.+.|+.++|.+. +++..+  +.|++...|+
T Consensus        97 ~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~  138 (150)
T 4ga2_A           97 TQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYK  138 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHH
Confidence             567888899999999999887765 466655  4676544443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.87  E-value=0.024  Score=51.08  Aligned_cols=86  Identities=12%  Similarity=0.002  Sum_probs=56.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV  153 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV  153 (566)
                      ..+...|+.++|++.|++..+. .  .+...+..+-..+.+.|+.++|+..|++......                 -|.
T Consensus       126 ~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-----------------~~~  185 (217)
T 2pl2_A          126 LVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-----------------KDL  185 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----------------TCH
T ss_pred             HHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCh
Confidence            4566788888888888888753 2  4667788888888888888888888888876532                 367


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          154 SVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       154 VTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      ..|..|-..+.+.|+.++|++.|++.
T Consensus       186 ~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          186 DLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            78888999999999999999988754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.83  E-value=0.061  Score=42.88  Aligned_cols=81  Identities=11%  Similarity=-0.043  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHH
Q 047498           83 SEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQS  162 (566)
Q Consensus        83 DEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdG  162 (566)
                      ++|++.|++..+.  ..-+...|..+-..+.+.|+.++|++.|++......                 -+...|..|-..
T Consensus         2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~la~~   62 (115)
T 2kat_A            2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----------------TYSVAWKWLGKT   62 (115)
T ss_dssp             CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHH
Confidence            3567778877642  223567788888999999999999999999876532                 356788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 047498          163 LAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       163 LCKsGRVdEAlkLLeEM~~r  182 (566)
                      +.+.|+.++|++.|++..+.
T Consensus        63 ~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           63 LQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999988764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.82  E-value=0.12  Score=45.13  Aligned_cols=104  Identities=7%  Similarity=-0.126  Sum_probs=80.2

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC--------------hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT--------------VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN  139 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD--------------vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT  139 (566)
                      ..+.+.|++++|++.|.+..+.....|+              ...|.-+-.++.+.|+.++|++.|++......      
T Consensus        46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------  119 (198)
T 2fbn_A           46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK------  119 (198)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------
Confidence            4567899999999999998742111221              26788888899999999999999999886532      


Q ss_pred             cccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccccccee
Q 047498          140 GTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVV  196 (566)
Q Consensus       140 YaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI  196 (566)
                                 .+...|..+-..+.+.|+.++|++.|++..+.  .|++.-.+..+-
T Consensus       120 -----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  163 (198)
T 2fbn_A          120 -----------NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYE  163 (198)
T ss_dssp             -----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred             -----------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHH
Confidence                       46788999999999999999999999998875  565444444333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.80  E-value=0.045  Score=46.33  Aligned_cols=96  Identities=11%  Similarity=0.068  Sum_probs=76.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcC-------C---------CCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRS-------G---------GVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLS  137 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~-------G---------g~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv  137 (566)
                      +.+.+.|++++|++.|.+.....       .         ..-+...|+-+-.+|.+.|+.++|+..|++......    
T Consensus        19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p----   94 (162)
T 3rkv_A           19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE----   94 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC----
Confidence            45778999999999998876310       0         011345788889999999999999999999876532    


Q ss_pred             CccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          138 ENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       138 vTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                                   -+...|.-+-..|.+.|+.++|++.|++..+.  .|++
T Consensus        95 -------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~  130 (162)
T 3rkv_A           95 -------------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA  130 (162)
T ss_dssp             -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred             -------------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence                         46788999999999999999999999998775  5743

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.60  E-value=0.065  Score=54.31  Aligned_cols=119  Identities=14%  Similarity=0.059  Sum_probs=81.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CCCccccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQG------LSENGTLV  143 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P------dvvTYaLi  143 (566)
                      .+-..+...|+.++|++++.+..+ .+. .=+...+-.++..+.+.|++|+|.+.|++|.+.  .|      |..-.-+.
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence            455677888999999999998853 221 126677788999999999999999999999765  33      11111111


Q ss_pred             ccc--------cc------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCCcccc
Q 047498          144 DRW--------KW------------SRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV--------GVSPGEEVPF  192 (566)
Q Consensus       144 ~~~--------rw------------~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r--------GcsPdDvVTY  192 (566)
                      .+|        +.            -.|+..+...|.+.+-+.|++++|.+.++.+.+.        ++.|+|.-+.
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            111        00            1477666777778888999999999999877653        1247665555

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.48  E-value=0.11  Score=44.12  Aligned_cols=120  Identities=10%  Similarity=0.017  Sum_probs=81.3

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc-ccccc-------c
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN-GTLVD-------R  145 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT-YaLi~-------~  145 (566)
                      +.+.+.|++++|++.|++..+..  .=+..+|..+-..+.+.|+.++|++.|+........  ... +....       .
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   88 (184)
T 3vtx_A           13 DKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYILGSANFMIDE   88 (184)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHcCC
Confidence            44667888999988888876421  125567788888888889999998888887655332  110 00000       0


Q ss_pred             c-----------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          146 W-----------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       146 ~-----------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      +           ....-|...|..+-..+.+.|+.++|++.|++..+.  .|++.-.|..+-.++
T Consensus        89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A           89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHH
Confidence            0           112346778888999999999999999999998874  576555555554444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=95.43  E-value=0.056  Score=45.09  Aligned_cols=94  Identities=6%  Similarity=-0.079  Sum_probs=71.9

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-  152 (566)
                      +.+.+.|++++|++.|.+..+..  .-+...|+-+=..|.+.|+.++|++.|++.......  .            .++ 
T Consensus        16 ~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~--~------------~~~~   79 (127)
T 4gcn_A           16 NAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE--T------------RADY   79 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--T------------TCCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc--c------------chhh
Confidence            45788999999999999987521  235677888999999999999999999987653210  0            011 


Q ss_pred             ---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          153 ---VSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       153 ---VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                         ..+|.-+=+.+-+.|++++|++.|++-....
T Consensus        80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence               2357777778889999999999999877643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.43  E-value=0.092  Score=49.64  Aligned_cols=104  Identities=12%  Similarity=-0.001  Sum_probs=82.8

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      -..+.+.|++++|.+.|++..+..  .-+...|+.+-..+.+.|+.++|++.|++......                 -|
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------~~   71 (281)
T 2c2l_A           11 GNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----------------QS   71 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-----------------TC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CC
Confidence            355778999999999999987522  12677889999999999999999999998875422                 36


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      ...|+.+-..|.+.|+.++|++.|++..+.  .|++...|+..+.
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~  114 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIP  114 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHH
Confidence            778999999999999999999999998774  3544455655543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.40  E-value=0.034  Score=49.10  Aligned_cols=112  Identities=13%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             cccccccchhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc
Q 047498           60 LSESENGVVEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN  139 (566)
Q Consensus        60 ~~~~~~~~~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT  139 (566)
                      ++....+++++.|.+.+-..+.+++++++--         -+...+..+=..+.+.|+.++|.+.|++......      
T Consensus         3 ~~~~~~~~~~~~l~~~~~~~~~l~~al~l~p---------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P------   67 (151)
T 3gyz_A            3 LNITENESISTAVIDAINSGATLKDINAIPD---------DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF------   67 (151)
T ss_dssp             ------CHHHHHHHHHHHTSCCTGGGCCSCH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCHHHHhCCCH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence            4445667788888888887777766654321         1334577777889999999999999999886632      


Q ss_pred             cccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          140 GTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       140 YaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                                 -|...|..|=..|.+.|+.++|++.|++..+  +.|++...|..+=.|+
T Consensus        68 -----------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           68 -----------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHH
T ss_pred             -----------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHH
Confidence                       3677888899999999999999999999988  4576666665554454

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=95.36  E-value=0.16  Score=47.35  Aligned_cols=95  Identities=8%  Similarity=0.045  Sum_probs=73.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      .+..+++.|++++|.+++.+..+.....|+.    ..|+.+-..+.+.|+.++|++.|++.......             
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-------------  147 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-------------  147 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-------------
Confidence            3678999999999999999987532223442    23445667777888999999999998874332             


Q ss_pred             cCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          148 WSRPD----VSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       148 w~~PD----VVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                        .+|    +.+|+.|-..+.+.|+.++|++.|++..+
T Consensus       148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              233    34699999999999999999999999874

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.26  E-value=0.086  Score=49.71  Aligned_cols=85  Identities=9%  Similarity=0.013  Sum_probs=62.4

Q ss_pred             cCCCH-------HHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           78 GAKDA-------SEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        78 KAGrl-------DEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      +.|+.       ++|...|++-.+  ...| +...|..+...+.+.|+.++|.++|++..+.                  
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------  128 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI------------------  128 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHT--TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------------------
T ss_pred             hccchhhcccchHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------
Confidence            46775       888888888873  1224 3447788888888888888888888888753                  


Q ss_pred             CCC-hH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          150 RPD-VS-VYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       150 ~PD-VV-TYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      .|+ .. .|+.+..-+.+.|++++|+++|++.++.
T Consensus       129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            243 22 6777888888888888888888887764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.24  E-value=0.067  Score=47.76  Aligned_cols=98  Identities=10%  Similarity=-0.045  Sum_probs=73.3

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      ..+.+.|++++|...|++..+.....+.  ...|+.+-..+...|+.++|++.|++.....-.           .....-
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~   81 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-----------IGDQLG   81 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HTCHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----------ccccHH
Confidence            3567799999999999999753211111  467889999999999999999999987543110           000012


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ...+|..+-..+.+.|+.++|.+.+++..+.
T Consensus        82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  112 (338)
T 3ro2_A           82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI  112 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3678899999999999999999999987653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.19  E-value=0.12  Score=50.39  Aligned_cols=105  Identities=6%  Similarity=-0.106  Sum_probs=84.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcC----------------hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLT----------------VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQG  135 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PD----------------vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P  135 (566)
                      +=..+.+.|++++|++.|++..+..   |+                ...|+-+-.+|.+.|+.++|++.|++......  
T Consensus       153 ~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--  227 (336)
T 1p5q_A          153 RGTVYFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--  227 (336)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence            3356778999999999999987422   33                47899999999999999999999999886532  


Q ss_pred             CCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceecc
Q 047498          136 LSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       136 dvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C  198 (566)
                                     -|...|.-+-..|.+.|+.++|++.|++..+.  .|++.-.|..+-.+
T Consensus       228 ---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          228 ---------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC  273 (336)
T ss_dssp             ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             ---------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence                           47888999999999999999999999999874  67555445444433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.13  E-value=0.052  Score=48.43  Aligned_cols=98  Identities=9%  Similarity=-0.063  Sum_probs=49.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW  148 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw  148 (566)
                      -..+.+.|+.++|.+.+.+..+.   .+. .....+|+.+-..+.+.|+.++|.+.|++.....-.           ...
T Consensus       230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----------~~~  298 (338)
T 3ro2_A          230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----------LKD  298 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----------cCC
Confidence            34445556666666665554311   000 001344555555666666666666666555432100           000


Q ss_pred             CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          149 SRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       149 ~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ......+|..|-..+.+.|+.++|.+.+++..+
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            001144566677777777777777777776654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=94.91  E-value=0.11  Score=57.53  Aligned_cols=106  Identities=14%  Similarity=0.101  Sum_probs=72.4

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-  151 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-  151 (566)
                      =..|.+.|++++|++.|++..+..  .=+...|+-|=..|.+.|+.++|++.|++-.+.                  .| 
T Consensus        50 g~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l------------------~P~  109 (723)
T 4gyw_A           50 ASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI------------------NPA  109 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCC
Confidence            344556666666666666655321  013445666666666666666666666665543                  34 


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccch
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPT  200 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~t  200 (566)
                      +...|+-|=..|.+.|+.++|++.|++..+  +.|++.-.|..+..++.
T Consensus       110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A          110 FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHH
Confidence            577899999999999999999999999887  46877777777776553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=94.87  E-value=0.22  Score=51.12  Aligned_cols=93  Identities=10%  Similarity=0.009  Sum_probs=63.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|.+.|++..+..  .-+...|+.+-..+.+.|+.++|.+.|++.....                 .-
T Consensus        63 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------p~  123 (568)
T 2vsy_A           63 LGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----------------PE  123 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CC
Confidence            3444556666666666666665321  1234556666666666677777766666665442                 13


Q ss_pred             ChHhHHHHHHHHHhc---CCHHHHHHHHHHHHhCC
Q 047498          152 DVSVYTSLVQSLAAS---LKVSDALRLIDDISRVG  183 (566)
Q Consensus       152 DVVTYNTLIdGLCKs---GRVdEAlkLLeEM~~rG  183 (566)
                      |...|..|-..+.+.   |+.++|.+.+++..+.+
T Consensus       124 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            577888899999999   99999999999998865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.85  E-value=0.17  Score=44.61  Aligned_cols=106  Identities=9%  Similarity=-0.035  Sum_probs=80.2

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|++.|.+..+..  .-+...|..+-..+.+.|+.++|++.|++.......               .|
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~  110 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---------------NA  110 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CH
T ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---------------cH
Confidence            5556778999999999999997521  225667899999999999999999999998865321               11


Q ss_pred             Ch-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--Cccccccee
Q 047498          152 DV-----SVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG--EEVPFGKVV  196 (566)
Q Consensus       152 DV-----VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd--DvVTYntLI  196 (566)
                      +.     ..|..+=..+.+.|+.++|++.|++..+.  .|+  +...|..+-
T Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A          111 TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            11     45777777888999999999999999875  674  334444333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=94.78  E-value=0.16  Score=38.41  Aligned_cols=66  Identities=14%  Similarity=0.046  Sum_probs=56.9

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +...|..+-..+.+.|+.++|+..|++......                 .+...|..+-..+.+.|+.++|++.|++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~   67 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----------------EESKYWLMKGKALYNLERYEEAVDCYNYVI   67 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            455688888999999999999999999886542                 467788999999999999999999999998


Q ss_pred             hCC
Q 047498          181 RVG  183 (566)
Q Consensus       181 ~rG  183 (566)
                      +..
T Consensus        68 ~~~   70 (112)
T 2kck_A           68 NVI   70 (112)
T ss_dssp             HTS
T ss_pred             HhC
Confidence            863

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.67  E-value=0.28  Score=46.18  Aligned_cols=112  Identities=11%  Similarity=-0.029  Sum_probs=75.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcCh-h-hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-Ccc---ccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTV-D-ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLS-ENG---TLV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDv-v-TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdv-vTY---aLi  143 (566)
                      ..+..-+.+.|++++|.++|++..+   ..|+. . .|+.+...+.+.|+.++|.++|++.....  |+. ..|   ...
T Consensus       103 ~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~  177 (308)
T 2ond_A          103 FAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence            4566677889999999999999984   23443 2 79999999999999999999999988643  211 111   000


Q ss_pred             c----c------------cccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 047498          144 D----R------------WKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG-VSP  186 (566)
Q Consensus       144 ~----~------------~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG-csP  186 (566)
                      .    +            .+...-+...|..+++-+.+.|+.++|+.+|++..... +.|
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence            0    0            00012245666667777777777777777777777663 355

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=94.53  E-value=0.11  Score=52.95  Aligned_cols=105  Identities=11%  Similarity=0.020  Sum_probs=86.0

Q ss_pred             HHHHHcCCCH-HHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           73 LSRVSGAKDA-SEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        73 IrGLCKAGrl-DEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      =..+...|++ ++|.+.|++..+..  .-+...|+.|=..|.+.|+.++|.+.|++....                  .|
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p  168 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------------------CK  168 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------------------CC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CC
Confidence            3456779999 99999999987532  124678999999999999999999999998754                  48


Q ss_pred             ChHhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          152 DVSVYTSLVQSLAAS---------LKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       152 DVVTYNTLIdGLCKs---------GRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                      |...|..|-..|.+.         |++++|++.|++..+.  .|++...|..+-.++
T Consensus       169 ~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~  223 (474)
T 4abn_A          169 NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAY  223 (474)
T ss_dssp             CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            888999999999999         9999999999999885  576666666555544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.49  E-value=0.13  Score=44.00  Aligned_cols=99  Identities=11%  Similarity=0.016  Sum_probs=76.8

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHH
Q 047498           78 GAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYT  157 (566)
Q Consensus        78 KAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYN  157 (566)
                      ..|++|+|++.+.....  ...-+...+-.|=..|.+.|+.++|.+.|++..+...                 =|..+|.
T Consensus         9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-----------------~~~~a~~   69 (150)
T 4ga2_A            9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-----------------RDPKAHR   69 (150)
T ss_dssp             CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHH
T ss_pred             HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHH
Confidence            45789999999998863  1112344556677889999999999999999886532                 3678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          158 SLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       158 TLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      .|=..+.+.|+.++|+..|++..+  +.|++.-.|..+-.
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~  107 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAE  107 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            999999999999999999999987  46766555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=94.46  E-value=0.19  Score=39.89  Aligned_cols=102  Identities=12%  Similarity=-0.078  Sum_probs=72.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcC---CC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRS---GG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDR  145 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~---Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~  145 (566)
                      ..+-..+...|++++|.+.+.+..+..   +. ..-...|+.+-..+.+.|+.++|++.|++.....-.           
T Consensus        13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----------   81 (164)
T 3ro3_A           13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----------   81 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------
Confidence            344456778999999999998875311   11 011247888999999999999999999997653110           


Q ss_pred             cccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          146 WKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       146 ~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..........|..+-..+.+.|+.++|.+.+++....
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            0000012567888888999999999999999887653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=94.43  E-value=0.11  Score=49.23  Aligned_cols=99  Identities=11%  Similarity=-0.015  Sum_probs=74.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      =..+.+.|++++|.+.|++..+.....++  ...|+.+-..+.+.|+.++|++.|++.....-.           .....
T Consensus        55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~  123 (411)
T 4a1s_A           55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS-----------MNDRL  123 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------TTCHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------ccCch
Confidence            34678899999999999999753211111  147889999999999999999999997643100           00001


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ....+|+.+-..+.+.|+.++|++.|++..+.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  155 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTL  155 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34678899999999999999999999987654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.43  E-value=0.15  Score=51.63  Aligned_cols=97  Identities=14%  Similarity=0.010  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC-cccccc--cc-------------c-
Q 047498           85 VLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE-NGTLVD--RW-------------K-  147 (566)
Q Consensus        85 AleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv-TYaLi~--~~-------------r-  147 (566)
                      |...|++..+  ...++..++..+-..+...|+.++|++++.+-...|-.++.. .+.+..  .+             + 
T Consensus        85 a~~~l~~l~~--~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLK--DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTT--TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7888888874  224566666788899999999999999999875544211111 111111  00             0 


Q ss_pred             -cCCCC-----hHhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCC
Q 047498          148 -WSRPD-----VSVYTSLVQS--LAASL--KVSDALRLIDDISRVG  183 (566)
Q Consensus       148 -w~~PD-----VVTYNTLIdG--LCKsG--RVdEAlkLLeEM~~rG  183 (566)
                       -..||     --+-.-|..+  ....|  +..+|+.+|+++..+.
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~  208 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF  208 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence             02672     4555555555  33345  9999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=94.36  E-value=0.21  Score=39.10  Aligned_cols=77  Identities=12%  Similarity=0.065  Sum_probs=63.1

Q ss_pred             CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 047498           99 VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDD  178 (566)
Q Consensus        99 ~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeE  178 (566)
                      ..+...|..+-..+.+.|+.++|++.|++......                 -|...|..+-..+.+.|+.++|++.|++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~   75 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----------------KDAKLYSNRAACYTKLLEFQLALKDCEE   75 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-----------------TCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45677889999999999999999999999886532                 3678899999999999999999999999


Q ss_pred             HHhCCCCCCCcccccc
Q 047498          179 ISRVGVSPGEEVPFGK  194 (566)
Q Consensus       179 M~~rGcsPdDvVTYnt  194 (566)
                      ..+.  .|++...|..
T Consensus        76 a~~~--~~~~~~~~~~   89 (133)
T 2lni_A           76 CIQL--EPTFIKGYTR   89 (133)
T ss_dssp             HHHH--CTTCHHHHHH
T ss_pred             HHHh--CCCchHHHHH
Confidence            9885  4644333333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.35  E-value=0.046  Score=46.51  Aligned_cols=98  Identities=8%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV  155 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT  155 (566)
                      +...|++++|.+.|.+..+..  .-+...|..+-..+.+.|+.++|++.|++.....-                 -|...
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~   80 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-----------------ENAEL   80 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------------SCHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------CCHHH
Confidence            456789999999999886422  23567889999999999999999999999876532                 36667


Q ss_pred             HHHHHHH-HHhcCCH--HHHHHHHHHHHhCCCCCCCcccccc
Q 047498          156 YTSLVQS-LAASLKV--SDALRLIDDISRVGVSPGEEVPFGK  194 (566)
Q Consensus       156 YNTLIdG-LCKsGRV--dEAlkLLeEM~~rGcsPdDvVTYnt  194 (566)
                      |..+-.. +.+.|+.  ++|++.|++..+.  .|++...|..
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~  120 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALML  120 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            7777777 6689998  9999999999886  4644444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=94.33  E-value=0.15  Score=47.52  Aligned_cols=96  Identities=10%  Similarity=-0.027  Sum_probs=60.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      .+-..+.+.|+.++|.+.+++..+.   .+. .....+|+.+-..+.+.|+.++|.+.|++.....-.            
T Consensus       232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------------  299 (406)
T 3sf4_A          232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE------------  299 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh------------
Confidence            3444566677777777777766421   111 011456677777777777777777777776543110            


Q ss_pred             ccCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          147 KWSRPD----VSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       147 rw~~PD----VVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                         .+|    ..+|..|-..+.+.|+.++|++.|++..+
T Consensus       300 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          300 ---LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               122    56777788888888888888888877544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=94.33  E-value=0.27  Score=50.51  Aligned_cols=97  Identities=8%  Similarity=-0.079  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|++++|.+.|++..+.  ..-+...|+.+-..+.+.|+.++|.+.|++..+..-                
T Consensus        27 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------------   88 (568)
T 2vsy_A           27 LMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP----------------   88 (568)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------------
Confidence            34555677789999999999999742  223567889999999999999999999999876532                


Q ss_pred             CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047498          150 RPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVS  185 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcs  185 (566)
                       -|...|..|-..+.+.|+.++|++.|++..+..-.
T Consensus        89 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           89 -EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence             35778999999999999999999999998877653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=94.33  E-value=0.23  Score=54.93  Aligned_cols=106  Identities=11%  Similarity=0.096  Sum_probs=87.5

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .|=..+.+.|++++|++.|++..+..   | +..+|+-|=..|.+.|+.++|++.|++-.+..                 
T Consensus        14 nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-----------------   73 (723)
T 4gyw_A           14 NLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----------------   73 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence            34455778999999999999987532   3 46788999999999999999999999987652                 


Q ss_pred             CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          150 RP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       150 ~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                       | +...|+-|=..|.+.|+.++|++.|++-.+  +.|++...|+.+-.++
T Consensus        74 -P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~  121 (723)
T 4gyw_A           74 -PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIH  121 (723)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence             4 477899999999999999999999999887  4787777777765544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=94.29  E-value=0.33  Score=43.98  Aligned_cols=97  Identities=9%  Similarity=-0.022  Sum_probs=72.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      ..+.+.|++++|.+.|.+..+.....+. ...+.-+-..+.+.|+.++|+..|++.......               .|+
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~   87 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---------------DPR   87 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---------------Cch
Confidence            3466899999999999999853211111 567788889999999999999999998876321               122


Q ss_pred             -hHhHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC
Q 047498          153 -VSVYTSLVQSLAA--------SLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       153 -VVTYNTLIdGLCK--------sGRVdEAlkLLeEM~~rGcsPd  187 (566)
                       ...|..+-..+-+        .|+.++|++.|++..+.  .|+
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~  129 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPN  129 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTT
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcC
Confidence             3345566666666        99999999999999885  364

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=94.16  E-value=0.27  Score=38.94  Aligned_cols=101  Identities=10%  Similarity=-0.044  Sum_probs=72.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDR  145 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~  145 (566)
                      ..+-..+...|++++|.+.+.+..+.   .+. ......|..+-..+.+.|+.++|.+.|++.....-.           
T Consensus        53 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------  121 (164)
T 3ro3_A           53 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----------  121 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------
Confidence            34556677899999999999987521   111 111456788888999999999999999987643110           


Q ss_pred             cccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          146 WKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       146 ~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      .........+|..|-..+.+.|+.++|.+.+++..+
T Consensus       122 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          122 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            000011256788889999999999999999988654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=94.12  E-value=0.14  Score=47.78  Aligned_cols=101  Identities=12%  Similarity=-0.077  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      .+-..+...|++++|.+.|.+..+.   .+. ......|+.+-..+.+.|+.++|...|++.....-.           .
T Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~  260 (406)
T 3sf4_A          192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----------L  260 (406)
T ss_dssp             HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------T
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-----------C
Confidence            4445677899999999999988531   111 111347889999999999999999999987643210           0


Q ss_pred             ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          147 KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       147 rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ....-...+|+.+-..+.+.|+.++|.+.|++....
T Consensus       261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  296 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  296 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            000011678999999999999999999999987664

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=94.04  E-value=0.21  Score=52.91  Aligned_cols=97  Identities=8%  Similarity=-0.038  Sum_probs=72.1

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhc----CCC-CcCh-hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           74 SRVSGAKDASEVLEIVAESSKR----SGG-VLTV-DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er----~Gg-~PDv-vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      ..+-..|++++|..++.+..+.    .|. .|++ .+||.|-..|...|+.++|..++++...---          ..+.
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~----------~~lG  386 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM----------KLYH  386 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HHSC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------HHcC
Confidence            3466899999999998776421    121 4544 5789999999999999999999998754210          0000


Q ss_pred             cCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          148 WSRPDV-SVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       148 w~~PDV-VTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      --.||+ .+||-|=.-|...|++++|..++++-.
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            115664 579999999999999999999998654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=93.97  E-value=0.25  Score=38.10  Aligned_cols=81  Identities=5%  Similarity=-0.175  Sum_probs=62.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+...|+.++|.+.+.+..+.  ..-+...|..+-..+.+.|+.++|.+.|++......                
T Consensus        50 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p----------------  111 (131)
T 2vyi_A           50 CNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP----------------  111 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc----------------
Confidence            44556778899999999999998752  223467788899999999999999999999876532                


Q ss_pred             CCChHhHHHHHHHHHhcCCH
Q 047498          150 RPDVSVYTSLVQSLAASLKV  169 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCKsGRV  169 (566)
                       -+...+..+...+.+.|+.
T Consensus       112 -~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          112 -DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -TCHHHHHHHHHHHHHHTTC
T ss_pred             -cchHHHHHHHHHHHHHhcC
Confidence             3566677777777776653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=93.96  E-value=0.32  Score=37.60  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=56.2

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ...|..+-..+.+.|+.++|+..|++......                 .+...|..+-..+.+.|+.++|+..+++...
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            34678888999999999999999999886532                 4678899999999999999999999999887


Q ss_pred             CC
Q 047498          182 VG  183 (566)
Q Consensus       182 rG  183 (566)
                      ..
T Consensus        67 ~~   68 (131)
T 1elr_A           67 VG   68 (131)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.95  E-value=0.24  Score=51.18  Aligned_cols=99  Identities=16%  Similarity=-0.023  Sum_probs=79.6

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV  155 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT  155 (566)
                      +.+.|++++|.+.+++..+..  .-+...|+.+-..+.+.|+.++|++.|++..+...                 -+...
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----------------~~~~~   76 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----------------KYIKG   76 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------------TCHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CCHHH
Confidence            457899999999999987521  22577899999999999999999999999886532                 35778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498          156 YTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKV  195 (566)
Q Consensus       156 YNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntL  195 (566)
                      |+.+-..|.+.|+.++|++.|++..+.  .|++...+..+
T Consensus        77 ~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l  114 (477)
T 1wao_1           77 YYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKY  114 (477)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            999999999999999999999998875  56544444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=93.94  E-value=0.19  Score=52.39  Aligned_cols=94  Identities=13%  Similarity=0.075  Sum_probs=70.1

Q ss_pred             cCCCHHHHHHHHHHHhhc----CCC-CcCh-hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           78 GAKDASEVLEIVAESSKR----SGG-VLTV-DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        78 KAGrlDEAleLL~EM~er----~Gg-~PDv-vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +.|++++|..++.+..+.    .|. .|++ .+||.|-..|...|+.++|..++++...---          ..+.--.|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~----------~~lG~~Hp  379 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS----------KHYPVYSL  379 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------HHSCSSCH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH----------HHcCCCCh
Confidence            467899999998876421    121 4554 6789999999999999999999999764210          00011257


Q ss_pred             Ch-HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          152 DV-SVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       152 DV-VTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      |+ .+||-|=.-|...|+.++|..++++-..
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            65 5699999999999999999999986543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.93  E-value=0.29  Score=37.59  Aligned_cols=64  Identities=11%  Similarity=0.059  Sum_probs=41.3

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +...|..+=..+.+.|+.++|++.|++......                 -|...|.-+-..+.+.|+.++|++.|++..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----------------QNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344566666666777777777777776654421                 245566666667777777777777777766


Q ss_pred             h
Q 047498          181 R  181 (566)
Q Consensus       181 ~  181 (566)
                      +
T Consensus        66 ~   66 (111)
T 2l6j_A           66 R   66 (111)
T ss_dssp             T
T ss_pred             H
Confidence            5

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=93.89  E-value=0.18  Score=47.96  Aligned_cols=100  Identities=11%  Similarity=-0.047  Sum_probs=54.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      .+-..+.+.|++++|.+.|++..+.   .+. .....+|..+-..+.+.|+.++|.+.|++.....-.           .
T Consensus       268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~  336 (411)
T 4a1s_A          268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-----------L  336 (411)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------H
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------C
Confidence            3444555666666666666655321   000 011345566666666666666666666665432100           0


Q ss_pred             ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          147 KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       147 rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ....-...+|..|-..+.+.|+.++|.+.|++..+
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            00001134666777777777777777777776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=93.89  E-value=0.16  Score=51.89  Aligned_cols=108  Identities=6%  Similarity=-0.161  Sum_probs=87.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhc---------CChhHHHHHHHHHHhcCCCCCCCcc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDR---------GNTDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKa---------GrVDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      ..|=..+.+.|++++|.+.|++..+.   .|+...|..+-..+.+.         |+.++|++.|++......       
T Consensus       141 ~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------  210 (474)
T 4abn_A          141 NQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-------  210 (474)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-------
Confidence            35556788899999999999999852   37778889999999999         999999999999886532       


Q ss_pred             ccccccccCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCC---CCcccccceeccc
Q 047498          141 TLVDRWKWSRPDVSVYTSLVQSLAAS--------LKVSDALRLIDDISRVGVSP---GEEVPFGKVVRCP  199 (566)
Q Consensus       141 aLi~~~rw~~PDVVTYNTLIdGLCKs--------GRVdEAlkLLeEM~~rGcsP---dDvVTYntLI~C~  199 (566)
                                -|...|+.|-..|.+.        |++++|++.|++..+.  .|   ++...|..+-.++
T Consensus       211 ----------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~  268 (474)
T 4abn_A          211 ----------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLH  268 (474)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHH
T ss_pred             ----------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence                      3578899999999999        9999999999999885  45   5555565554444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=93.78  E-value=0.27  Score=41.69  Aligned_cols=93  Identities=9%  Similarity=-0.115  Sum_probs=65.9

Q ss_pred             HcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhH
Q 047498           77 SGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVY  156 (566)
Q Consensus        77 CKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTY  156 (566)
                      ...|++++|.+.++....  ........|+.+-..+...|+.++|+..|++.....-.           .........+|
T Consensus         3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~   69 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK-----------SGDHTAEHRAL   69 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH-----------cCCcHHHHHHH
Confidence            468999999995554442  11235678899999999999999999999997753110           00001346788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          157 TSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       157 NTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +.+-..+...|+.++|.+.+++-.+.
T Consensus        70 ~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           70 HQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999886653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.76  E-value=0.25  Score=51.19  Aligned_cols=99  Identities=10%  Similarity=-0.021  Sum_probs=74.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcC----CC-CcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRS----GG-VLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~----Gg-~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      |..+-+.|++++|.+++.+..+..    |. .|+ ..++|.|...|...|+.++|.+++++...---          ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~----------~~l  363 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR----------IFF  363 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------HHS
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHH----------HHc
Confidence            567888999999999998885321    11 233 35789999999999999999999998764210          000


Q ss_pred             ccCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          147 KWSRPDV-SVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       147 rw~~PDV-VTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      .--.|++ .+||-|=.-|...|++++|..++++-.+
T Consensus       364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            0115665 6799999999999999999999986543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=93.76  E-value=0.25  Score=41.86  Aligned_cols=98  Identities=12%  Similarity=-0.058  Sum_probs=73.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhh---cCCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSK---RSGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDR  145 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~e---r~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~  145 (566)
                      ..+-..+...|++++|.+.+++..+   ..+. ......|+.+=..+...|+.++|.+.|++-....-.           
T Consensus        30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------   98 (203)
T 3gw4_A           30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-----------   98 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------
Confidence            4455567789999999999988753   1112 234567888889999999999999999986643110           


Q ss_pred             cccCCC-----ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          146 WKWSRP-----DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       146 ~rw~~P-----DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                          .+     ....|+.|-..+.+.|++++|.+.+++....
T Consensus        99 ----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           99 ----LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             ----SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                12     2456888899999999999999999987653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.72  E-value=0.029  Score=43.25  Aligned_cols=57  Identities=9%  Similarity=-0.141  Sum_probs=47.2

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      =..+.+.|++++|++.|++..+..  .-+...|.-+-..+.+.|+.++|++.|++....
T Consensus        11 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A           11 GNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            345678999999999999987422  235677888999999999999999999998854

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=93.61  E-value=0.92  Score=42.23  Aligned_cols=93  Identities=12%  Similarity=0.058  Sum_probs=67.9

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCC--CCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           75 RVSGAKDASEVLEIVAESSKRSG--GVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~G--g~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      -+...|+.++|++.|.+..+...  ..+.  ..+|+.+=..|.+.|+.++|++.|++.....-.               .
T Consensus       124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~---------------~  188 (293)
T 2qfc_A          124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA---------------L  188 (293)
T ss_dssp             HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------S
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------c
Confidence            34667899999999888753111  1111  347888889999999999999999887632000               1


Q ss_pred             C-----ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 P-----DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 P-----DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      |     ++.+|+-+-..|.+.|+.++|++.+++-.+-
T Consensus       189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            2     2368999999999999999999999987653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.56  E-value=0.44  Score=44.76  Aligned_cols=96  Identities=10%  Similarity=-0.007  Sum_probs=69.5

Q ss_pred             HHHHcC-CCHHHHHHHHHHHhhc---CCCCcC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498           74 SRVSGA-KDASEVLEIVAESSKR---SGGVLT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW  148 (566)
Q Consensus        74 rGLCKA-GrlDEAleLL~EM~er---~Gg~PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw  148 (566)
                      .-+.+. |++++|++.|++..+-   .+.... ..+|+-+-..+++.|+.++|++.|++.......              
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------  190 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG--------------  190 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS--------------
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--------------
Confidence            345554 9999999999987531   111001 346888999999999999999999998875432              


Q ss_pred             CCCCh-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          149 SRPDV-----SVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       149 ~~PDV-----VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                       .++.     .+|..+...+.+.|+.++|++.|++...  +.|
T Consensus       191 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p  230 (292)
T 1qqe_A          191 -NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDP  230 (292)
T ss_dssp             -CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C--
T ss_pred             -CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence             1222     1577777888899999999999998765  455

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=93.56  E-value=0.4  Score=36.34  Aligned_cols=76  Identities=17%  Similarity=0.066  Sum_probs=61.0

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +...|..+...+.+.|+.++|++.|++......                 .|...|.-+-..+.+.|+.++|.+.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~   65 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTV   65 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            345688889999999999999999999886532                 367888999999999999999999999998


Q ss_pred             hCCCCCCCcccccce
Q 047498          181 RVGVSPGEEVPFGKV  195 (566)
Q Consensus       181 ~rGcsPdDvVTYntL  195 (566)
                      +.  .|++...|..+
T Consensus        66 ~~--~~~~~~~~~~~   78 (118)
T 1elw_A           66 DL--KPDWGKGYSRK   78 (118)
T ss_dssp             HH--CTTCHHHHHHH
T ss_pred             Hh--CcccHHHHHHH
Confidence            85  45443344333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=93.56  E-value=0.39  Score=38.16  Aligned_cols=64  Identities=14%  Similarity=0.081  Sum_probs=47.7

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      |...+..+=..+.+.|+.++|++.|++..+...                 -+...|..|=..|.+.|+.++|++.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-----------------DYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445677777788888888888888888776532                 245567778888888888888888887765


Q ss_pred             h
Q 047498          181 R  181 (566)
Q Consensus       181 ~  181 (566)
                      +
T Consensus        69 ~   69 (100)
T 3ma5_A           69 E   69 (100)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.52  E-value=0.44  Score=35.32  Aligned_cols=68  Identities=12%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ...|..+-..+.+.|+.++|++.|++......                 -+...|..+-..+.+.|+.++|++.|++..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            45677777788888999999999988776532                 3566788888888899999999999988877


Q ss_pred             CCCCCCC
Q 047498          182 VGVSPGE  188 (566)
Q Consensus       182 rGcsPdD  188 (566)
                      .  .|++
T Consensus        72 ~--~p~~   76 (91)
T 1na3_A           72 L--DPNN   76 (91)
T ss_dssp             H--CTTC
T ss_pred             c--CCCC
Confidence            4  4543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=93.44  E-value=0.49  Score=48.27  Aligned_cols=107  Identities=5%  Similarity=-0.107  Sum_probs=81.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC-------------hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT-------------VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD-------------vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      ..+.+.|++++|+..|++..+.....++             ...|+-+=.+|.+.|+.++|+..|++.....-       
T Consensus       276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------  348 (457)
T 1kt0_A          276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-------  348 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------
Confidence            5678899999999999988742111111             57888999999999999999999999886532       


Q ss_pred             ccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccc
Q 047498          141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~  199 (566)
                                -|...|.-+=..|.+.|+.++|++.|++..+  +.|++.-.|..+-.++
T Consensus       349 ----------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          349 ----------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQ  395 (457)
T ss_dssp             ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHH
T ss_pred             ----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence                      4678899999999999999999999999987  4676655555554443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=93.40  E-value=0.34  Score=47.13  Aligned_cols=92  Identities=11%  Similarity=-0.001  Sum_probs=75.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|++++|++.+++..+..  .-+...|.-+=.+|.+.|+.++|+..|++......                 
T Consensus       201 nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----------------  261 (336)
T 1p5q_A          201 NLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-----------------  261 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------------
Confidence            44456778999999999999997522  23677899999999999999999999999886532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 047498          151 PDVSVYTSLVQSLAASLKVSDA-LRLIDDISR  181 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEA-lkLLeEM~~  181 (566)
                      -|...|..|-..+.+.|+.++| .+++..|..
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577889999999999999999 557777754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=93.37  E-value=0.61  Score=41.83  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=68.5

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      ..+-+.|++++|.+.|++..+.....| ....+.-+-.++.+.|+.++|++.|++..+....               .|+
T Consensus        12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---------------~~~   76 (225)
T 2yhc_A           12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------------HPN   76 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---------------CCc
Confidence            347778999999999999975321112 1346777889999999999999999999876421               122


Q ss_pred             hHhHHHHHHHHH--------------------hcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          153 VSVYTSLVQSLA--------------------ASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       153 VVTYNTLIdGLC--------------------KsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                      + .+.-...|.|                    +.|+.++|++.|+++.+.  .|++.
T Consensus        77 ~-~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~  130 (225)
T 2yhc_A           77 I-DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQ  130 (225)
T ss_dssp             H-HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCT
T ss_pred             H-HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCCh
Confidence            1 1222223333                    368999999999999885  46443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=93.09  E-value=0.5  Score=42.40  Aligned_cols=88  Identities=9%  Similarity=0.072  Sum_probs=68.2

Q ss_pred             cCCCHHHHHHHHHHHhhcCCCCcChh-hh-----------------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc
Q 047498           78 GAKDASEVLEIVAESSKRSGGVLTVD-EC-----------------CLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN  139 (566)
Q Consensus        78 KAGrlDEAleLL~EM~er~Gg~PDvv-TY-----------------NsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT  139 (566)
                      ..|+.++|+..|++..+..   |+.. .+                 -.+-..+.+.|+.++|+..|+++.+.-       
T Consensus       108 ~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------  177 (225)
T 2yhc_A          108 DPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------  177 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------
T ss_pred             CcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------
Confidence            3689999999999998532   4322 11                 134456889999999999999998763       


Q ss_pred             cccccccccCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          140 GTLVDRWKWSRPDV----SVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       140 YaLi~~~rw~~PDV----VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                                 ||-    -.+..+...+-+.|+.++|++.++.+...+..-
T Consensus       178 -----------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          178 -----------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             -----------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             -----------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                       442    467888999999999999999999998876543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=93.07  E-value=0.36  Score=47.16  Aligned_cols=102  Identities=8%  Similarity=-0.057  Sum_probs=73.3

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChh------------------hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVD------------------ECCLIINAAIDRGNTDLALSIFYAMRSSFDQG  135 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvv------------------TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~P  135 (566)
                      ..+.+.|++++|...|.+....   .|+..                  .|+-+=.+|.+.|+.++|+..|++.....-  
T Consensus       187 ~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--  261 (338)
T 2if4_A          187 NSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE--  261 (338)
T ss_dssp             HHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--
T ss_pred             HHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence            4566799999999999997642   24433                  688888999999999999999999876531  


Q ss_pred             CCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          136 LSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       136 dvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                                     -|...|.-+-..|.+.|+.++|++.|++..+  +.|++.-.+..|-.
T Consensus       262 ---------------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~  306 (338)
T 2if4_A          262 ---------------KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRA  306 (338)
T ss_dssp             ---------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred             ---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence                           3678899999999999999999999998865  45755545544443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=92.90  E-value=0.35  Score=45.43  Aligned_cols=98  Identities=5%  Similarity=0.020  Sum_probs=63.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhc---CCCCc-ChhhhHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCCCccccccccc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKR---SGGVL-TVDECCLIINAAIDR-GNTDLALSIFYAMRSSFDQGLSENGTLVDRWK  147 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er---~Gg~P-DvvTYNsLI~GlCKa-GrVDeAlsLF~EM~srG~~PdvvTYaLi~~~r  147 (566)
                      -..+.+.|++++|++.+++..+-   .|... -..+|+-|=..|.+. |+.++|+..|++-....-.             
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~-------------  150 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ-------------  150 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh-------------
Confidence            34455677777777777665421   11100 134566666667775 7777777777765532100             


Q ss_pred             cCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047498          148 WSRPD----VSVYTSLVQSLAASLKVSDALRLIDDISRVGVS  185 (566)
Q Consensus       148 w~~PD----VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcs  185 (566)
                        ..+    ..+|+-+-..+++.|+.++|+..|++..+....
T Consensus       151 --~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  190 (292)
T 1qqe_A          151 --DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (292)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             --CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence              011    457899999999999999999999999986543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=92.87  E-value=0.88  Score=42.36  Aligned_cols=97  Identities=9%  Similarity=0.011  Sum_probs=70.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC----hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT----VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD----vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      .-+...|+.++|++.|.+..+......|    ...|+.|-..|.+.|+.++|++.|++....--.           ....
T Consensus       123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~-----------~~~~  191 (293)
T 3u3w_A          123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA-----------LHDN  191 (293)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------SSCC
T ss_pred             HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------cccc
Confidence            3345567999999999998742111233    236899999999999999999999998742100           0000


Q ss_pred             CCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          150 RPDV-SVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       150 ~PDV-VTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      .++. .+|+-|-..|.+.|+.++|++.+++-..
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            2333 4899999999999999999999987665

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=92.85  E-value=0.46  Score=48.06  Aligned_cols=115  Identities=3%  Similarity=-0.052  Sum_probs=75.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCC-cc-cc------
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGN-TDLALSIFYAMRSSFDQGLSE-NG-TL------  142 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGr-VDeAlsLF~EM~srG~~Pdvv-TY-aL------  142 (566)
                      +-..+.+.|+.++|++.+++..+..  .=+...|+.+=..+.+.|+ .++|+..|++.....  |+.. .| .+      
T Consensus       103 lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A          103 FRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
Confidence            3345667888999999988887421  1245677888888888887 999999998887643  2221 00 00      


Q ss_pred             cccc--------cc--CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccc
Q 047498          143 VDRW--------KW--SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPF  192 (566)
Q Consensus       143 i~~~--------rw--~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTY  192 (566)
                      ...+        +.  ..| |...|+-+-..|.+.|++++|++.|+++++.  .|++...|
T Consensus       179 ~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~  237 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVW  237 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHH
Confidence            0000        00  134 6778888888888899999999999988874  55443333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=92.75  E-value=0.33  Score=41.76  Aligned_cols=120  Identities=12%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccc---c---cccc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTL---V---DRWK  147 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaL---i---~~~r  147 (566)
                      ..+.+.|++++|...|++..+..  .-+...+..+-..+.+.|+.++|+..|++.....  |+...+.+   .   ....
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~   89 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA   89 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence            34666788888888887765311  1245567777777888888888888877654322  21110000   0   0000


Q ss_pred             c------------CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          148 W------------SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       148 w------------~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      .            ..| |...|..|-..|.+.|+.++|++.|+++.+..-.+++...+..+..
T Consensus        90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~  152 (176)
T 2r5s_A           90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD  152 (176)
T ss_dssp             SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred             cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence            0            146 5888999999999999999999999999987654433334444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=92.69  E-value=0.17  Score=43.28  Aligned_cols=80  Identities=14%  Similarity=0.005  Sum_probs=63.2

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +...+..+-..+.+.|+.++|+..|++......                 -|...|..+=..+.+.|+.++|++.|++..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-----------------YDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-----------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            455677788899999999999999999876532                 467788888889999999999999999998


Q ss_pred             hCCCCCCCcccccceeccc
Q 047498          181 RVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       181 ~rGcsPdDvVTYntLI~C~  199 (566)
                      ..  .|++...|..+-.|+
T Consensus        83 ~l--~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           83 VM--DIXEPRFPFHAAECL   99 (148)
T ss_dssp             HH--STTCTHHHHHHHHHH
T ss_pred             hc--CCCCchHHHHHHHHH
Confidence            74  576655555444343

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=92.62  E-value=0.89  Score=41.10  Aligned_cols=95  Identities=7%  Similarity=-0.145  Sum_probs=69.9

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcC-hhhhHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCCCCCcccc
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLT-VDECCLIINAAID--------RGNTDLALSIFYAMRSSFDQGLSENGTL  142 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PD-vvTYNsLI~GlCK--------aGrVDeAlsLF~EM~srG~~PdvvTYaL  142 (566)
                      +-..+.+.|++++|++.|++..+.....|+ ...|..+-..+.+        .|+.++|+..|++.......        
T Consensus        58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------  129 (261)
T 3qky_A           58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--------  129 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--------
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--------
Confidence            334577899999999999999753211222 3456677777778        99999999999998876321        


Q ss_pred             ccccccCCCChHhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          143 VDRWKWSRPDVSVY-----------------TSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       143 i~~~rw~~PDVVTY-----------------NTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                               +...+                 -.+-..|-+.|+.++|+..|++..+..
T Consensus       130 ---------~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A          130 ---------HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence                     11222                 345667889999999999999998853

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=92.59  E-value=1.2  Score=39.72  Aligned_cols=112  Identities=14%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC-cc-cccc--
Q 047498           69 EEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE-NG-TLVD--  144 (566)
Q Consensus        69 ~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv-TY-aLi~--  144 (566)
                      .+.+=..+.+.|++++|...|++..+..  .-+...|..+-..+.+.|+.++|++.|++....  .|+.. .+ .+-.  
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYY  132 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            3446667888999999999999997532  125678899999999999999999999998865  34321 11 1100  


Q ss_pred             -------------cc-ccCCCChHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          145 -------------RW-KWSRPDVSV--YTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       145 -------------~~-rw~~PDVVT--YNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                                   .. +...|+-.-  |.-+=.++...|+.++|+..|++..+  ..|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P  188 (208)
T 3urz_A          133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFP  188 (208)
T ss_dssp             HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSC
T ss_pred             HHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCC
Confidence                         00 112333222  22223334456788888888888775  456

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=92.54  E-value=0.57  Score=44.20  Aligned_cols=121  Identities=13%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc------
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW------  146 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~------  146 (566)
                      -..+.+.|+.++|.+.|++..+..  .-+...+..|-..+.+.|+.++|..+|++....  .|+.....+..+.      
T Consensus       124 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~  199 (287)
T 3qou_A          124 AMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQA  199 (287)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhc
Confidence            345678999999999999997432  125567889999999999999999999987543  2322111110000      


Q ss_pred             cc------------CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          147 KW------------SRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       147 rw------------~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      ..            ..| |...+..|-..|-+.|+.++|+..|.++.+..-..++.-.+..+..
T Consensus       200 ~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          200 ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            00            134 6888999999999999999999999999986432212344444444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.54  E-value=0.71  Score=36.83  Aligned_cols=73  Identities=10%  Similarity=-0.039  Sum_probs=60.6

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC----hHhHHHHHHHHHhcCCHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD----VSVYTSLVQSLAASLKVSDALRLI  176 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD----VVTYNTLIdGLCKsGRVdEAlkLL  176 (566)
                      +...+..+-..+.+.|+.++|++.|++....                  .|+    ...|..+-..+.+.|++++|++.+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   88 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL------------------DATPQDQAVLHRNRAACHLKLEDYDKAETEA   88 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------------------cccchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            5667888899999999999999999998754                  366    788999999999999999999999


Q ss_pred             HHHHhCCCCCCCccccc
Q 047498          177 DDISRVGVSPGEEVPFG  193 (566)
Q Consensus       177 eEM~~rGcsPdDvVTYn  193 (566)
                      ++..+.  .|++...|.
T Consensus        89 ~~~~~~--~~~~~~~~~  103 (148)
T 2dba_A           89 SKAIEK--DGGDVKALY  103 (148)
T ss_dssp             HHHHHH--TSCCHHHHH
T ss_pred             HHHHhh--CccCHHHHH
Confidence            998875  564433333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=92.50  E-value=0.65  Score=47.00  Aligned_cols=30  Identities=7%  Similarity=-0.094  Sum_probs=25.1

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      ...|+.+-..+.+.|+.++|++.|++....
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l  126 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL  126 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            345777778888999999999999998864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=92.48  E-value=1.1  Score=33.13  Aligned_cols=58  Identities=16%  Similarity=0.086  Sum_probs=47.4

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      +-..+.+.|++++|.+.|++..+..  .-+...|..+-..+.+.|+.++|++.|++....
T Consensus        15 la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           15 LGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3455778999999999999987422  235667888999999999999999999998765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=92.43  E-value=0.42  Score=39.73  Aligned_cols=80  Identities=16%  Similarity=0.012  Sum_probs=62.3

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +...+..+-..+.+.|+.++|.+.|++......                 -|...|..|-..+.+.|+.++|++.|++..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----------------YDARYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344566677889999999999999999886532                 367778888899999999999999999998


Q ss_pred             hCCCCCCCcccccceeccc
Q 047498          181 RVGVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       181 ~rGcsPdDvVTYntLI~C~  199 (566)
                      ..  .|++...|..+-.|+
T Consensus        80 ~~--~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           80 LM--DINEPRFPFHAAECH   96 (142)
T ss_dssp             HH--CTTCTHHHHHHHHHH
T ss_pred             hc--CCCCcHHHHHHHHHH
Confidence            85  476555554444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=92.33  E-value=0.61  Score=47.31  Aligned_cols=84  Identities=10%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             CCCHH-------HHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           79 AKDAS-------EVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        79 AGrlD-------EAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .|+++       +|.++|++-.+  ...| +...|..+...+.+.|+.++|.++|++.....                  
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------  351 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE------------------  351 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS------------------
T ss_pred             ccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc------------------
Confidence            68887       89999999873  2234 46778889999999999999999999988642                  


Q ss_pred             CC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PD--VSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PD--VVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      |+  ...|..+..-+++.|++++|+++|++-.+.
T Consensus       352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            43  236777777777777777777777776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=92.31  E-value=0.52  Score=47.11  Aligned_cols=97  Identities=6%  Similarity=-0.019  Sum_probs=76.9

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcC--------------CCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRS--------------GGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN  139 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~--------------Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT  139 (566)
                      ..+.+.|++++|++.+++..+..              -..-+...|+-+=.++.+.|+.++|++.|++......      
T Consensus       231 ~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------  304 (370)
T 1ihg_A          231 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------  304 (370)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------
Confidence            46778999999999998876300              0112456788899999999999999999999886421      


Q ss_pred             cccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          140 GTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       140 YaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                                 -+...|..+=..|.+.|+.++|++.|++..+.  .|++.
T Consensus       305 -----------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~  341 (370)
T 1ihg_A          305 -----------SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDK  341 (370)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             -----------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence                       36778899999999999999999999998874  56443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=92.14  E-value=0.62  Score=47.24  Aligned_cols=61  Identities=10%  Similarity=-0.117  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      +-..+..-+.+.|+.++|.++|++..+.   .|+  ...|+.+...+.+.|+.++|.++|++-...
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            4456677778899999999999999852   244  247999999999999999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=92.11  E-value=0.94  Score=36.13  Aligned_cols=80  Identities=10%  Similarity=-0.107  Sum_probs=64.1

Q ss_pred             cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      .+...|..+-..+.+.|+.++|+..|++......                 -+...|..+-..+.+.|+.++|++.|++.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------------LVAVYYTNRALCYLKMQQPEQALADCRRA   69 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-----------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4677889999999999999999999999876532                 35788999999999999999999999999


Q ss_pred             HhCCCCCCCcccccceecc
Q 047498          180 SRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       180 ~~rGcsPdDvVTYntLI~C  198 (566)
                      .+.  .|++...|..+-.+
T Consensus        70 l~~--~p~~~~~~~~l~~~   86 (137)
T 3q49_B           70 LEL--DGQSVKAHFFLGQC   86 (137)
T ss_dssp             HHH--CTTCHHHHHHHHHH
T ss_pred             HHh--CchhHHHHHHHHHH
Confidence            885  46544444444333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=92.03  E-value=2.3  Score=38.37  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=47.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAID----RGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCK----aGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      .++.++|++.|.+..+ .+   +...|+.|=..|.+    .|+.++|++.|++....+                   +..
T Consensus        55 ~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------------~~~  111 (273)
T 1ouv_A           55 EKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------------------YAE  111 (273)
T ss_dssp             CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------CHH
T ss_pred             CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-------------------Ccc
Confidence            6677777777776654 22   45556666666666    677777777776665543                   233


Q ss_pred             hHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047498          155 VYTSLVQSLAA----SLKVSDALRLIDDISRVG  183 (566)
Q Consensus       155 TYNTLIdGLCK----sGRVdEAlkLLeEM~~rG  183 (566)
                      .|+.|-..+-+    .|+.++|++.|++-.+.|
T Consensus       112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            44444444444    555555555555555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=91.92  E-value=1.7  Score=40.45  Aligned_cols=97  Identities=7%  Similarity=0.009  Sum_probs=70.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcC----hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLT----VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PD----vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      ..+..+...|+.++|++.+.+..+.....++    ...|..+-..+...|+.++|++.|++.......            
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------  147 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT------------  147 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC------------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc------------
Confidence            3567788999999999999887642211111    122444556678889999999999987753221            


Q ss_pred             ccCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          147 KWSRPD--VSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       147 rw~~PD--VVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                       ...+.  ..+|+.+-..|.+.|+.++|++.|++..
T Consensus       148 -~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal  182 (293)
T 2qfc_A          148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL  182 (293)
T ss_dssp             -SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             00122  4589999999999999999999999887

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=91.85  E-value=2.1  Score=38.60  Aligned_cols=87  Identities=11%  Similarity=0.019  Sum_probs=72.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAID----RGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCK----aGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+.+.|+.++|++.|++..+ .+   +..++..|-..+.+    .|+.++|++.|++-...+                 
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------   72 (273)
T 1ouv_A           14 AKSYKEKDFTQAKKYFEKACD-LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----------------   72 (273)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------
T ss_pred             HHHHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----------------
Confidence            446678999999999999985 32   45678888888999    999999999999987653                 


Q ss_pred             CCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047498          150 RPDVSVYTSLVQSLAA----SLKVSDALRLIDDISRVG  183 (566)
Q Consensus       150 ~PDVVTYNTLIdGLCK----sGRVdEAlkLLeEM~~rG  183 (566)
                        +...|..|-..+.+    .++.++|++.|++..+.|
T Consensus        73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence              45677778788888    999999999999998875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=91.66  E-value=0.95  Score=38.84  Aligned_cols=80  Identities=11%  Similarity=0.048  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHH
Q 047498           84 EVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQS  162 (566)
Q Consensus        84 EAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdG  162 (566)
                      +|.+.|++..+..   | |...+..+-..+.+.|+.++|.+.|+++.+....               ..|...+..|...
T Consensus        92 ~a~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~a~~~l~~~  153 (176)
T 2r5s_A           92 PELKRLEQELAAN---PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG---------------AQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---------------TTTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc---------------cChHHHHHHHHHH
Confidence            4566666665321   3 4567778888888889999999988888765321               1246689999999


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 047498          163 LAASLKVSDALRLIDDISR  181 (566)
Q Consensus       163 LCKsGRVdEAlkLLeEM~~  181 (566)
                      |-+.|+.++|...|++...
T Consensus       154 ~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          154 LSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCCCCcHHHHHHHHHH
Confidence            9999999999999987654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=91.19  E-value=0.87  Score=38.37  Aligned_cols=80  Identities=15%  Similarity=0.050  Sum_probs=64.2

Q ss_pred             cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      .+...|..+-..+.+.|+.++|++.|++......                 -|...|..+-..|.+.|+.++|++.|++.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   71 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----------------ANPIYLSNRAAAYSASGQHEKAAEDAELA   71 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------cCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3566788888999999999999999999876532                 37788999999999999999999999999


Q ss_pred             HhCCCCCCCcccccceecc
Q 047498          180 SRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       180 ~~rGcsPdDvVTYntLI~C  198 (566)
                      .+.  .|++...|..+-.+
T Consensus        72 l~~--~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           72 TVV--DPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHH--CTTCHHHHHHHHHH
T ss_pred             HHh--CCCCHHHHHHHHHH
Confidence            885  47554444444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=90.87  E-value=1.2  Score=35.69  Aligned_cols=75  Identities=13%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          102 VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       102 vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ...|..+=..+.+.|+.++|++.|++..+..-                 -|...|.-+-..+.+.|+.++|++.|++..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----------------EDARGYSNRAAALAKLMSFPEAIADCNKAIE   66 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34567777889999999999999999876532                 4678899999999999999999999999988


Q ss_pred             CCCCCCCcccccce
Q 047498          182 VGVSPGEEVPFGKV  195 (566)
Q Consensus       182 rGcsPdDvVTYntL  195 (566)
                      .  .|++...|..+
T Consensus        67 ~--~p~~~~~~~~l   78 (126)
T 3upv_A           67 K--DPNFVRAYIRK   78 (126)
T ss_dssp             H--CTTCHHHHHHH
T ss_pred             h--CCCcHHHHHHH
Confidence            5  57554444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=90.76  E-value=1.2  Score=41.12  Aligned_cols=94  Identities=15%  Similarity=-0.010  Sum_probs=69.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC-------------hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT-------------VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD-------------vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      ..+.+.|++++|++.|++-.+-   .|+             ...|+-+=.++.+.|+.++|+..|++-....        
T Consensus        19 ~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~--------   87 (159)
T 2hr2_A           19 QRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF--------   87 (159)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--------
Confidence            3467899999999999988642   133             2378888999999999999999999876530        


Q ss_pred             ccccccccCCCC-hHhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          141 TLVDRWKWSRPD-VSVY----TSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       141 aLi~~~rw~~PD-VVTY----NTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                        ..... ..|| .-.|    +-.=..|.+.||.++|+.-|++-.+
T Consensus        88 --n~~~e-~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           88 --NRRGE-LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             --HHHCC-TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hcccc-CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence              00000 0253 3455    7777889999999999999998765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=90.65  E-value=0.68  Score=40.30  Aligned_cols=94  Identities=13%  Similarity=0.018  Sum_probs=64.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +-..+.+.|++++|++.+.+..+.  ..-+...|..+-..+.+.|+.++|++.|++.....-                 -
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~  154 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-----------------N  154 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----------------T
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----------------C
Confidence            445567899999999999998752  223567888899999999999999999999876531                 2


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCC
Q 047498          152 DVSVYTSLVQSLAASLKVSDAL-RLIDDISRVGV  184 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAl-kLLeEM~~rGc  184 (566)
                      |...+..|-..+.+.++.+++. +.+..|..+|.
T Consensus       155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5667888888888888888887 67777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.60  E-value=1.5  Score=47.17  Aligned_cols=100  Identities=12%  Similarity=0.060  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHh--------hcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESS--------KRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTL  142 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~--------er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaL  142 (566)
                      .++.+ ...|+.++|++.|++..        +.  ..-+...|..+-..+.+.|+.++|++.|++..+..-         
T Consensus       397 ~~~~a-~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---------  464 (681)
T 2pzi_A          397 SVLQA-TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---------  464 (681)
T ss_dssp             HHHHH-TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---------
T ss_pred             HHhhc-ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---------
Confidence            34444 78999999999999987        31  123556788888999999999999999999886532         


Q ss_pred             ccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccc
Q 047498          143 VDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPF  192 (566)
Q Consensus       143 i~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTY  192 (566)
                              -|...|+.+=..|.+.|+.++|++.|++..+.  .|++.-.|
T Consensus       465 --------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~  504 (681)
T 2pzi_A          465 --------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPK  504 (681)
T ss_dssp             --------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHH
T ss_pred             --------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence                    36678888888999999999999999998874  57543333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=90.52  E-value=1.4  Score=42.28  Aligned_cols=96  Identities=9%  Similarity=-0.080  Sum_probs=72.1

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCCCccccc
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSS----FDQGLSENGTLV  143 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr----G~~PdvvTYaLi  143 (566)
                      +=..+...|++++|.+.|.+..+.   .+. .....+|+.|=..+.+.|+.++|++.|++-...    +..         
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---------  260 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL---------  260 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG---------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc---------
Confidence            335677789999999999887521   111 111247888999999999999999999987652    110         


Q ss_pred             cccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          144 DRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       144 ~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                            .-...+|+.|-..+.+.|+.++|.+.+++..+.
T Consensus       261 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          261 ------PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             ------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                  123667899999999999999999999987653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=90.40  E-value=0.96  Score=37.68  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ..|+-+=+.|.+.|+.++|++.|++..+...                 -|...|.-+-..|.+.|+.++|++.|++.++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----------------ENAILYSNRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence            3455566789999999999999999876532                 47888999999999999999999999998874


Q ss_pred             CCCCCCcccccceeccc
Q 047498          183 GVSPGEEVPFGKVVRCP  199 (566)
Q Consensus       183 GcsPdDvVTYntLI~C~  199 (566)
                        .|++.-.|..+-.++
T Consensus        77 --~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           77 --DSKFIKGYIRKAACL   91 (126)
T ss_dssp             --CTTCHHHHHHHHHHH
T ss_pred             --hhhhhHHHHHHHHHH
Confidence              575555554444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=90.32  E-value=0.83  Score=48.38  Aligned_cols=98  Identities=5%  Similarity=-0.105  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhc----CCC-CcCh-hhhHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCCCC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKR----SGG-VLTV-DECCLIINAAIDRGNTDLALSIFYAMRSS-----FDQGLSE  138 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er----~Gg-~PDv-vTYNsLI~GlCKaGrVDeAlsLF~EM~sr-----G~~Pdvv  138 (566)
                      +.|-.-|...|++++|..++.+..+-    .|. .|++ .+||-|=..|...|+.++|..+|++-..-     |-.    
T Consensus       355 ~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~----  430 (490)
T 3n71_A          355 SIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS----  430 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT----
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC----
Confidence            35566778899999999998876411    233 5665 66899999999999999999999985532     322    


Q ss_pred             ccccccccccCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          139 NGTLVDRWKWSRPDVS-VYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       139 TYaLi~~~rw~~PDVV-TYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                                 +|++. +++.|-..+-+.|+.++|..++.+|+++
T Consensus       431 -----------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          431 -----------HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             -----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       56654 5677777888899999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=90.14  E-value=1.8  Score=40.84  Aligned_cols=98  Identities=7%  Similarity=-0.105  Sum_probs=67.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhhc---CCCC--cC-hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccc
Q 047498           72 LLSRVSGAKDASEVLEIVAESSKR---SGGV--LT-VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDR  145 (566)
Q Consensus        72 LIrGLCKAGrlDEAleLL~EM~er---~Gg~--PD-vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~  145 (566)
                      +-..+...|++++|.+.+++..+.   .+..  |. ...++.+-..+...|+.++|..+|++.....-..         +
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------~  169 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---------Q  169 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------C
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------C
Confidence            444566789999998888877521   1221  22 3456667778889999999999998876542210         0


Q ss_pred             cccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          146 WKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       146 ~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                          .+ ...+|..+-..+.+.|+.++|...+++....
T Consensus       170 ----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          170 ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             ----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                01 2457888888889999999999999887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=90.05  E-value=0.89  Score=36.48  Aligned_cols=61  Identities=8%  Similarity=0.000  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF  132 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG  132 (566)
                      ..|-..+.+.|++++|++.|++..+..  .-+...|..+-.++.+.|+.++|++.|++.....
T Consensus        31 ~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           31 LGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            345566778999999999999997532  1246678889999999999999999999987653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=89.60  E-value=0.73  Score=35.25  Aligned_cols=57  Identities=18%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChh-hhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVD-ECCLIINAAIDRGNTDLALSIFYAMRSSF  132 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvv-TYNsLI~GlCKaGrVDeAlsLF~EM~srG  132 (566)
                      ..+.+.|++++|++.|++..+..  .-+.. .|..+=..+.+.|+.++|++.|++.....
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            35678899999999999997532  12456 78888889999999999999999988664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=89.07  E-value=2  Score=35.49  Aligned_cols=63  Identities=11%  Similarity=0.051  Sum_probs=53.1

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          103 DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       103 vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      .+|.-|=+.+.+.|+.++|++.|++......                 -|...|+-+=..|.+.|+.++|++.|++..+-
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-----------------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~   71 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-----------------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEV   71 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4566677789999999999999999876421                 35778999999999999999999999988764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=88.97  E-value=1.6  Score=33.36  Aligned_cols=65  Identities=14%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          108 IINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS-VYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       108 LI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV-TYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                      .-..+.+.|+.++|++.|++..+...                 -|.. .|..+=..+.+.|+.++|++.|++..+.  .|
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEP-----------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCS-----------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence            34567899999999999999886532                 3456 7888888999999999999999999875  46


Q ss_pred             CCccc
Q 047498          187 GEEVP  191 (566)
Q Consensus       187 dDvVT  191 (566)
                      ++.-.
T Consensus        67 ~~~~~   71 (99)
T 2kc7_A           67 DSPAL   71 (99)
T ss_dssp             TSTHH
T ss_pred             CcHHH
Confidence            44333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=88.65  E-value=1.4  Score=41.58  Aligned_cols=96  Identities=9%  Similarity=0.035  Sum_probs=64.5

Q ss_pred             HHHcCCCHHHHHHHHHHHhhc---CCCC-cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           75 RVSGAKDASEVLEIVAESSKR---SGGV-LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er---~Gg~-PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      -+.+ |++++|++.|++..+-   .+.. -...+|+-+-..+.+.|+.++|++.|++....-..         ..  . .
T Consensus       125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------~~--~-~  191 (307)
T 2ifu_A          125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE---------ME--N-Y  191 (307)
T ss_dssp             HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------TT--C-H
T ss_pred             HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------cC--C-h
Confidence            3455 9999999998877521   1110 01456788888999999999999999987653110         00  0 1


Q ss_pred             CCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          151 PDV-SVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       151 PDV-VTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                      ++. .+|..+...+.+.|+.++|++.|++..   ..|
T Consensus       192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p  225 (307)
T 2ifu_A          192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIP  225 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TST
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCC
Confidence            112 255555556666699999999999987   566

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=88.22  E-value=2.6  Score=40.32  Aligned_cols=97  Identities=4%  Similarity=-0.007  Sum_probs=70.6

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCc----ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVL----TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~P----DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +...|++++|++.|.+..+.....+    ...+|+.+=..+...|+.++|++.|++-....-+        ...  ....
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~--~~~~  182 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE--------HEA--YNIR  182 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------CST--THHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------Ccc--chHH
Confidence            4678999999999999863211112    3467888999999999999999999987643211        000  0011


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ...+|+.|=..+.+.|+.++|++.|++..+.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  213 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSM  213 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2567888989999999999999999887653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=88.15  E-value=2.1  Score=41.12  Aligned_cols=98  Identities=12%  Similarity=0.036  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhc---CCC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCCCcccc
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKR---SGG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSS----FDQGLSENGTL  142 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er---~Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr----G~~PdvvTYaL  142 (566)
                      .|=..+...|++++|.+.|.+..+.   .+. .....+|+-|=..+.+.|+.++|++.|++-...    +.         
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------  257 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---------  257 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---------
Confidence            3445567799999999999877531   111 112356788888999999999999999987652    11         


Q ss_pred             ccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047498          143 VDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGV  184 (566)
Q Consensus       143 i~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGc  184 (566)
                             .-...+|..|-..+.+.|+.++|.+.+++.....-
T Consensus       258 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          258 -------DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             -------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             -------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                   12367888999999999999999999999877543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=87.77  E-value=1.7  Score=43.37  Aligned_cols=63  Identities=13%  Similarity=-0.088  Sum_probs=40.3

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH--hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          105 CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS--VYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       105 YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV--TYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      |..|=.++.+.|+.++|++.|++-.....                .|...  ....+-..|.+.|+.++|..+|+++...
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~----------------~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPA----------------GEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTT----------------TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCC----------------CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            44444455556666666666665542211                15422  4455666788999999999999999886


Q ss_pred             C
Q 047498          183 G  183 (566)
Q Consensus       183 G  183 (566)
                      .
T Consensus       238 ~  238 (282)
T 4f3v_A          238 H  238 (282)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.69  E-value=6.2  Score=40.05  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=76.5

Q ss_pred             cchhHHHHHHHHc-------CCCHHHHHHHHHHHhhcCCC--CcChh------------------hhHHHHHHHHhcCCh
Q 047498           66 GVVEEELLSRVSG-------AKDASEVLEIVAESSKRSGG--VLTVD------------------ECCLIINAAIDRGNT  118 (566)
Q Consensus        66 ~~~~~aLIrGLCK-------AGrlDEAleLL~EM~er~Gg--~PDvv------------------TYNsLI~GlCKaGrV  118 (566)
                      .++|-.....+++       +|+.++|.+.+++......|  .++..                  +...++..+.+.|+.
T Consensus       108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~  187 (388)
T 2ff4_A          108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA  187 (388)
T ss_dssp             GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            4566544444443       57888999998887543333  33331                  113466777889999


Q ss_pred             hHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCC
Q 047498          119 DLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV-----GVSPGE  188 (566)
Q Consensus       119 DeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r-----GcsPdD  188 (566)
                      ++|+..++.....-                 .-|--.|-.||..|.+.|+..+|++.|++..+.     |+.|+.
T Consensus       188 ~~a~~~l~~~~~~~-----------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          188 SAVIAELEALTFEH-----------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            99999888886542                 137778999999999999999999999987663     999963

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=87.59  E-value=1.6  Score=41.16  Aligned_cols=97  Identities=9%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhc--CCCCcC--hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcccccccccc
Q 047498           73 LSRVSGAKDASEVLEIVAESSKR--SGGVLT--VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKW  148 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er--~Gg~PD--vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw  148 (566)
                      -..|.+.|++++|++.|++-.+-  ..+.++  ..+|+-|=..|.+ |+.++|++.|++-....-.           ...
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~-----------~~~  150 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN-----------EER  150 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-----------TTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh-----------CCC
Confidence            34455678888888777765321  111121  3455666666666 8888888888775532100           000


Q ss_pred             CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          149 SRPDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       149 ~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ..--..+|+-|-..|.+.|+.++|++.|++..+
T Consensus       151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            000146788899999999999999999998876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=87.34  E-value=0.95  Score=42.71  Aligned_cols=95  Identities=8%  Similarity=-0.033  Sum_probs=65.7

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCC--------------------------------CCcChhhhHHHHHHHHhcCCh
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSG--------------------------------GVLTVDECCLIINAAIDRGNT  118 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~G--------------------------------g~PDvvTYNsLI~GlCKaGrV  118 (566)
                      .|-.-+.+.|+.++|.+.|++......                                ..-|...+..|-..+.+.|+.
T Consensus       156 ~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~  235 (287)
T 3qou_A          156 LLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN  235 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence            455667788999999888877642100                                112344556666677777777


Q ss_pred             hHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          119 DLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       119 DeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      ++|+..|.+..+....               ..|...+..|..-|-..|+.++|...+++-.
T Consensus       236 ~~A~~~l~~~l~~~p~---------------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          236 EEALELLFGHLRXDLT---------------AADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHHCTT---------------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccc---------------cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            7777777777655321               1236789999999999999999999887643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=87.30  E-value=1  Score=46.53  Aligned_cols=89  Identities=7%  Similarity=-0.075  Sum_probs=64.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      ..+-..+.+.|++++|++.+++..+.  ..-+...|+.+=..|.+.|+.++|++.|++..+..-.               
T Consensus        44 ~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---------------  106 (477)
T 1wao_1           44 GNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---------------  106 (477)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---------------
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------
Confidence            34556678899999999999999752  2235678899999999999999999999998765321               


Q ss_pred             CCChHhHHHHHHH--HHhcCCHHHHHHHHH
Q 047498          150 RPDVSVYTSLVQS--LAASLKVSDALRLID  177 (566)
Q Consensus       150 ~PDVVTYNTLIdG--LCKsGRVdEAlkLLe  177 (566)
                      .++  .+..+-..  +.+.|+.++|+++++
T Consensus       107 ~~~--~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          107 DKD--AKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            233  34444444  888999999999988

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=87.22  E-value=3.1  Score=39.91  Aligned_cols=96  Identities=10%  Similarity=0.026  Sum_probs=69.5

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCcC----hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVLT----VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP  151 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~PD----vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P  151 (566)
                      +...|+.++|++.|.+..+.....+|    ...|+.|=..+...|+.++|++.|++-....-.        ...  ...-
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--------~~~--~~~~  180 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN--------HPL--YSIR  180 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------STT--CHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh--------CCC--chhh
Confidence            35799999999999998632111122    457788889999999999999999987643110        000  0001


Q ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          152 DVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       152 DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ...+|+.|=..+.+.|+.++|.+.|++-.+
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  210 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALE  210 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            256788888999999999999999987765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=86.92  E-value=5  Score=37.83  Aligned_cols=96  Identities=7%  Similarity=-0.073  Sum_probs=67.5

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcCh----hhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTV----DECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDv----vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      -+...|++++|.+.+++..... ...+.    ..++.+-..+...|+.++|.+.|++.....-.         .+  ...
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~--~~~   90 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ---------HD--VWH   90 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------TT--CHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh---------cC--cHH
Confidence            3456899999999999976422 11121    25677778899999999999999987643110         00  000


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      ....+++.+-..+...|++++|.+.+++....
T Consensus        91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            12345777888899999999999999987653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=86.74  E-value=2.8  Score=32.94  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCCh----HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047498          105 CCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDV----SVYTSLVQSLAASLKVSDALRLIDDIS  180 (566)
Q Consensus       105 YNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDV----VTYNTLIdGLCKsGRVdEAlkLLeEM~  180 (566)
                      +..+-..+.+.|+.++|.+.|++.....                  |+-    ..|..+-..+.+.|+.++|++.|++..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~   66 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY------------------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV   66 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC------------------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3445567889999999999999988753                  332    367778888999999999999999998


Q ss_pred             hCC
Q 047498          181 RVG  183 (566)
Q Consensus       181 ~rG  183 (566)
                      +..
T Consensus        67 ~~~   69 (129)
T 2xev_A           67 SRY   69 (129)
T ss_dssp             HHC
T ss_pred             HHC
Confidence            864

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=84.92  E-value=2.5  Score=42.13  Aligned_cols=97  Identities=6%  Similarity=-0.041  Sum_probs=72.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWS  149 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~  149 (566)
                      =.+...|...|++++|.++|+.+..  +. |+-+..-.+=.-+.+.|+.++|+..|++...                 |.
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~--~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-----------------~~  165 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPV--AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-----------------WP  165 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCC--TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-----------------CS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----------------cC
Confidence            3566778899999999999999973  22 5544566666689999999999999974322                 11


Q ss_pred             CCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          150 RPD--VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       150 ~PD--VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                      .|.  ...|..|=..|.+.|+.++|++.|++.......|
T Consensus       166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P  204 (282)
T 4f3v_A          166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGE  204 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTT
T ss_pred             CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCc
Confidence            121  2356677778999999999999999998544336

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=84.62  E-value=2.6  Score=33.24  Aligned_cols=60  Identities=7%  Similarity=-0.106  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS  131 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr  131 (566)
                      ..+-..+.+.|++++|.+.|++..+..  .-+...|..+-..+.+.|+.++|...|++....
T Consensus        23 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           23 FTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345556788999999999999987522  234667889999999999999999999987654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=83.42  E-value=3  Score=32.90  Aligned_cols=58  Identities=16%  Similarity=0.020  Sum_probs=47.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS  130 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s  130 (566)
                      .+=..+.+.|++++|++.|++..+..  .-+...|..+=..|.+.|+.++|++.|++-..
T Consensus        12 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A           12 ALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44456778999999999999997532  12456789999999999999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=83.16  E-value=2.3  Score=45.72  Aligned_cols=115  Identities=14%  Similarity=0.051  Sum_probs=82.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc-c-cc--------
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN-G-TL--------  142 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT-Y-aL--------  142 (566)
                      -..+.+.|++++|++.|++..+..  .-|...|+.+=..+.+.|+.++|++.|++..+..  |+... | .+        
T Consensus       440 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g  515 (681)
T 2pzi_A          440 VRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAG  515 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcC
Confidence            356778999999999999997521  1256678888889999999999999999987543  32211 1 00        


Q ss_pred             ----cccc----ccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccc
Q 047498          143 ----VDRW----KWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGK  194 (566)
Q Consensus       143 ----i~~~----rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYnt  194 (566)
                          +..+    +. .| |...|.-|=..|.+.|+.++|++.|++..+  ..|++.-.|..
T Consensus       516 ~~~~~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~  573 (681)
T 2pzi_A          516 NTDEHKFYQTVWST-NDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLT  573 (681)
T ss_dssp             CCCTTCHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHh-CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHH
Confidence                0011    11 34 677899999999999999999999998765  45754444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=82.66  E-value=3.8  Score=38.51  Aligned_cols=78  Identities=12%  Similarity=-0.055  Sum_probs=63.5

Q ss_pred             ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          101 TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       101 DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      +...+..+-..+.+.|+.++|+..|++.....                  | |...|+.+-..+-+.|++++|++.+++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a   64 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN------------------PLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45567888889999999999999999987652                  4 7788999999999999999999999998


Q ss_pred             HhCCCCCCCcccccceecc
Q 047498          180 SRVGVSPGEEVPFGKVVRC  198 (566)
Q Consensus       180 ~~rGcsPdDvVTYntLI~C  198 (566)
                      .+.  .|++...|..+-.+
T Consensus        65 l~~--~p~~~~~~~~lg~~   81 (281)
T 2c2l_A           65 LEL--DGQSVKAHFFLGQC   81 (281)
T ss_dssp             TTS--CTTCHHHHHHHHHH
T ss_pred             HHh--CCCCHHHHHHHHHH
Confidence            874  67665555544433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.89  E-value=2.8  Score=42.64  Aligned_cols=65  Identities=11%  Similarity=-0.056  Sum_probs=53.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSS-----FDQGLS  137 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr-----G~~Pdv  137 (566)
                      .+++.+-+.|+.++|+..+......  ...++..|-.||.+|.+.|+..+|++.|++.++.     |+.|+.
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4556677899999999999988742  3468889999999999999999999999998764     886444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=80.76  E-value=4.3  Score=41.32  Aligned_cols=93  Identities=6%  Similarity=-0.047  Sum_probs=69.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+=..+.+.|++++|++.+++..+..  .-+...|.-+=.+|.+.|+.++|+..|++......                 
T Consensus       322 nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-----------------  382 (457)
T 1kt0_A          322 NLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-----------------  382 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Confidence            33455668999999999999987532  23677889999999999999999999999885421                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHH-HHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALR-LIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlk-LLeEM~~r  182 (566)
                      -|...|+.|-..+-+.|+.++|.+ ++..|..+
T Consensus       383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          383 QNKAARLQISMCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            255678888888999999988764 55666544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=80.01  E-value=8.1  Score=31.64  Aligned_cols=77  Identities=13%  Similarity=-0.016  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          104 ECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       104 TYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      .+-.+-..+.+.|+.++|+..|++.....-                 -|...|..|=..+.+.|+.++|++.|++..+. 
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-   80 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-----------------EREEAWRSLGLTQAENEKDGLAIIALNHARML-   80 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            345566788999999999999999886532                 36777888888999999999999999998874 


Q ss_pred             CCCCCcccccceeccc
Q 047498          184 VSPGEEVPFGKVVRCP  199 (566)
Q Consensus       184 csPdDvVTYntLI~C~  199 (566)
                       .|++...|..+-.++
T Consensus        81 -~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           81 -DPKDIAVHAALAVSH   95 (121)
T ss_dssp             -CTTCHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHH
Confidence             575555554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	566
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.06
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.75
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.13
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.38
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.44
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.31
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	91.9
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	91.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	91.49
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	91.41
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	90.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.02
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	88.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	88.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	88.24
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	87.72
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	87.31
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	84.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	84.62
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	84.53
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	83.54

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.003  Score=55.68  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCC--CcCh------------------hhhHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGG--VLTV------------------DECCLIINAAIDRGNTDLALSIFYAMRSSFD  133 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg--~PDv------------------vTYNsLI~GlCKaGrVDeAlsLF~EM~srG~  133 (566)
                      +.+.+.|++++|.+.|++-..-..+  .+|.                  ..++.+...+.+.|+.++|+..++.+...--
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P   98 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP   98 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            4677899999999999987643222  2222                  3568899999999999999999999987532


Q ss_pred             CCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCC
Q 047498          134 QGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISR-----VGVSPG  187 (566)
Q Consensus       134 ~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~-----rGcsPd  187 (566)
                                       =|.-.|..|+..|.+.|+.++|++.|+++.+     -|+.|+
T Consensus        99 -----------------~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          99 -----------------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             -----------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence                             3788999999999999999999999999855     599994

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0025  Score=56.05  Aligned_cols=117  Identities=10%  Similarity=0.027  Sum_probs=62.1

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc-c-ccccc-----
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN-G-TLVDR-----  145 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT-Y-aLi~~-----  145 (566)
                      -..+...|++++|.+.+.+....  ...+...|..+-..+.+.|+.++|++.|++.....  |+... + .+...     
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~  285 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHS
T ss_pred             hhhhhccccHHHHHHHHHHhHHH--hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence            34455555666666555555431  11233444555555555566666666655554321  21100 0 00000     


Q ss_pred             ------------cccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498          146 ------------WKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKV  195 (566)
Q Consensus       146 ------------~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntL  195 (566)
                                  ......+...+..+...+.+.|+.++|++.|++..+  +.|++...|..+
T Consensus       286 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l  345 (388)
T d1w3ba_         286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNL  345 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred             CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence                        001135667788888888888888888888888765  467554444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.005  Score=51.32  Aligned_cols=102  Identities=12%  Similarity=0.021  Sum_probs=81.1

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCC-C
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRP-D  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~P-D  152 (566)
                      +.|.+.|++++|++.|.+..+.  ..-+...|+-+=.+|.+.|++++|+..|++....                  .| +
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------------------~p~~   71 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------------------DGQS   71 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------------------CTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh------------------CCCc
Confidence            4688999999999999988642  1246678899999999999999999999998743                  35 5


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      +.+|.-|=..|.+.|+.++|+..|+....-  .|++...|...+.
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l--~p~~~~~~~~~~~  114 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIP  114 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence            778999999999999999999999987653  3533444544444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0081  Score=50.06  Aligned_cols=97  Identities=15%  Similarity=-0.020  Sum_probs=80.3

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      -+.+.|++++|+..|.+..+-.  .-+...|+-+-..|.+.|++++|++.|++..+...                 -+..
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-----------------~~~~   79 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----------------KYIK   79 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHH
T ss_pred             HHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-----------------cchH
Confidence            4678999999999999997532  23667789999999999999999999999986532                 3567


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccc
Q 047498          155 VYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPF  192 (566)
Q Consensus       155 TYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTY  192 (566)
                      .|..+...+...|+.++|++.+++....  .|++.-.+
T Consensus        80 a~~~~g~~~~~~g~~~eA~~~~~~a~~~--~p~~~~~~  115 (159)
T d1a17a_          80 GYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAK  115 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH
Confidence            8999999999999999999999999885  47544333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0058  Score=49.20  Aligned_cols=92  Identities=11%  Similarity=-0.038  Sum_probs=79.3

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      -+.+.|++++|+..|.+..+.  ..-+...|+.+=.+|.+.|+.++|++.|++......                 -|..
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~   72 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----------------DWGK   72 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------TCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhcc-----------------chhh
Confidence            467899999999999999753  224667789999999999999999999999987654                 5788


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498          155 VYTSLVQSLAASLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       155 TYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd  187 (566)
                      .|.-+-..+.+.|+.++|++.|++-.+  +.|+
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~  103 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLK--HEAN  103 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence            899999999999999999999999987  4664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0056  Score=53.69  Aligned_cols=93  Identities=10%  Similarity=-0.027  Sum_probs=77.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      +.+-+.|++++|.+.+.++.+..   | |...+..+-..+.+.|+.++|.+.|++..+...                 -+
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----------------~~   66 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-----------------LL   66 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CC
Confidence            34667899999999999997532   3 466788888999999999999999999876532                 24


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSP  186 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsP  186 (566)
                      ..+|..|-..+.+.|++++|++.+....+.....
T Consensus        67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccccccc
Confidence            6789999999999999999999999998865433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.02  Score=50.82  Aligned_cols=88  Identities=10%  Similarity=0.057  Sum_probs=74.0

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV  155 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT  155 (566)
                      +.+.|++++|.+.|++..+.  ..-+..+|.-+-..+.+.|+.++|+..|++..+...                 =+...
T Consensus        29 ~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~   89 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-----------------DNQTA   89 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-----------------ccccc
Confidence            67899999999999999852  222467889999999999999999999999876421                 25677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          156 YTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       156 YNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      |..+...|.+.|+.++|.+.+++....
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~  116 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRY  116 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccchhhHHHh
Confidence            888899999999999999999998763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.046  Score=46.79  Aligned_cols=90  Identities=8%  Similarity=-0.202  Sum_probs=74.5

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      .+-+.|++++|.+.|++..+-.  .=+..+|+.+=..+.+.|+.++|++.|++......                 -+..
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------~~~~  106 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-----------------TYNY  106 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCTH
T ss_pred             HHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-----------------hhhh
Confidence            4566999999999999997422  12567889999999999999999999999987532                 2456


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          155 VYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       155 TYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      +|.-+-..|.+.|+.++|++.|+.-.+..
T Consensus       107 a~~~lg~~~~~~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         107 AHLNRGIALYYGGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            78888888999999999999999988753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.66  E-value=0.026  Score=45.03  Aligned_cols=86  Identities=12%  Similarity=0.041  Sum_probs=72.7

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChH
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVS  154 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVV  154 (566)
                      .+-+.|++++|...|++.....  .=+..+|.-+=..+-+.|+.++|...|++..+...                 -|.-
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~   85 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----------------KDIA   85 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc-----------------cccc
Confidence            3567999999999999997532  12578899999999999999999999999876532                 3578


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          155 VYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       155 TYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      .|..|-..+-+.|+.++|++.|++.
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8888999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.074  Score=47.03  Aligned_cols=101  Identities=8%  Similarity=-0.044  Sum_probs=75.6

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+-..+.+.|+.++|...|++.....  .-+...|+.+-..|.+.|+.++|++.|++..+.                  .
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~  236 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL------------------Q  236 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------C
T ss_pred             hhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHH------------------h
Confidence            34455668999999999999986422  124567888999999999999999999987754                  2


Q ss_pred             C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccccc
Q 047498          151 P-DVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFG  193 (566)
Q Consensus       151 P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYn  193 (566)
                      | +...|..|-..|-+.|+.++|++.|++-++  +.|++...+.
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~  278 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALN--MQRKSRGPRG  278 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHTC-----
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCcChhhhh
Confidence            4 456788899999999999999999998776  3454333333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.015  Score=48.22  Aligned_cols=98  Identities=8%  Similarity=0.065  Sum_probs=77.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCCCcccccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNT---DLALSIFYAMRSSFDQGLSENGTLVDRW  146 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrV---DeAlsLF~EM~srG~~PdvvTYaLi~~~  146 (566)
                      +.|++.+...+++++|.+.|++....  ...+..++.-+=.+|++.++.   ++|+++|++......             
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~-------------   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------------   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-------------
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC-------------
Confidence            35788899999999999999999752  235667888888889886655   469999999876543             


Q ss_pred             ccCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047498          147 KWSRPD-VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPG  187 (566)
Q Consensus       147 rw~~PD-VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPd  187 (566)
                         .|+ +.+|.-|=.++.+.|+.++|++.|++..+  +.|+
T Consensus        68 ---~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~  104 (122)
T d1nzna_          68 ---KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ  104 (122)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred             ---CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcC
Confidence               244 33677777888999999999999999998  5685

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.077  Score=45.03  Aligned_cols=95  Identities=5%  Similarity=-0.150  Sum_probs=75.0

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCc-------------ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccc
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVL-------------TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGT  141 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~P-------------DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYa  141 (566)
                      .+.+.|++++|++.|.+...-....+             -..+|+-+-.+|.+.|+.++|++.+++-.....        
T Consensus        22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p--------   93 (170)
T d1p5qa1          22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--------   93 (170)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc--------
Confidence            57889999999999987753211111             124566677889999999999999999776531        


Q ss_pred             cccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          142 LVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       142 Li~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                               -|+..|.-+-..+.+.|+.++|+..|++..+  +.|++
T Consensus        94 ---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n  129 (170)
T d1p5qa1          94 ---------NNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNN  129 (170)
T ss_dssp             ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSC
T ss_pred             ---------cchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCC
Confidence                     3888899999999999999999999999988  46754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.22  E-value=0.12  Score=42.95  Aligned_cols=96  Identities=7%  Similarity=-0.099  Sum_probs=76.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCC---CCcC-----------hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSG---GVLT-----------VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSEN  139 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~G---g~PD-----------vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvT  139 (566)
                      +.+.+.|++++|+..+.+..+...   ...+           ..+|+-+-.+|.+.|+.++|++.|++......      
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p------   98 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK------   98 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc------
Confidence            468899999999999998753111   1111           23566688889999999999999999876532      


Q ss_pred             cccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 047498          140 GTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGE  188 (566)
Q Consensus       140 YaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdD  188 (566)
                                 -|+-+|--+-..+.+.|++++|+..|+.-.+-  .|++
T Consensus        99 -----------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n  134 (153)
T d2fbna1          99 -----------NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN  134 (153)
T ss_dssp             -----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred             -----------hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence                       47899999999999999999999999998774  4643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.044  Score=44.51  Aligned_cols=95  Identities=9%  Similarity=0.030  Sum_probs=72.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-  152 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-  152 (566)
                      +.+.+.|++++|++.|.+..+..  .-+...|+-+=.+|.+.|+.++|+..|+++......           .....++ 
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-----------~~~~~~~~   78 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-----------NREDYRQI   78 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------STTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-----------cHHHHHHH
Confidence            34778999999999999998532  236778899999999999999999999998753210           0000011 


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ..+|.-+=+.+...+++++|++.|+.-..
T Consensus        79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          79 AKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            35788888899999999999999987654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.11  Score=44.98  Aligned_cols=84  Identities=13%  Similarity=-0.048  Sum_probs=71.1

Q ss_pred             HHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHh
Q 047498           76 VSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSV  155 (566)
Q Consensus        76 LCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVT  155 (566)
                      +...|++++|++.|.++..     |+...|+-+=..+.+.|+.++|++.|++-.+..-                 -+...
T Consensus        15 ~~~~~d~~~Al~~~~~i~~-----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-----------------~~~~a   72 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-----------------HLAVA   72 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHH
T ss_pred             HHHCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-----------------hhhhh
Confidence            4568999999999998752     5667788888899999999999999999876532                 46778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          156 YTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       156 YNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      |+-+=..+.+.|+.++|++.|++-..
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            88888889999999999999998765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.31  E-value=0.045  Score=47.88  Aligned_cols=64  Identities=11%  Similarity=-0.056  Sum_probs=54.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRS-----SFDQG  135 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~s-----rG~~P  135 (566)
                      ..+...+.+.|++++|+..++...+.  ..-|...|..|+.+|.+.|+.++|++.|+++++     -|+.|
T Consensus        71 ~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          71 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            35677888899999999999999752  235888999999999999999999999999865     48864

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.90  E-value=0.29  Score=40.37  Aligned_cols=101  Identities=13%  Similarity=-0.063  Sum_probs=69.0

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC----------hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT----------VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLV  143 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD----------vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi  143 (566)
                      ....+.|++++|+..|.+-.+-....|+          ...|+-+=.+|.+.|+.++|++-+++..+---+       ..
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~-------~~   89 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR-------RG   89 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc-------cc
Confidence            3456789999999999988632111232          467888999999999999999999997642100       00


Q ss_pred             cccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          144 DRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       144 ~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ....-..| ....|+.+=..|-+.|+.++|++.|++..+
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000001 123577778889999999999999998654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=91.87  E-value=0.8  Score=38.13  Aligned_cols=99  Identities=5%  Similarity=-0.127  Sum_probs=74.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCC--Cc-----------ChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGG--VL-----------TVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG  140 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg--~P-----------DvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY  140 (566)
                      +-+.+.|++++|++.|.+-..-...  ..           ....|+-+=.++.+.|+.++|+..|++.....        
T Consensus        23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--------   94 (168)
T d1kt1a1          23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------   94 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc--------
Confidence            3588899999999999775411000  01           11234445567899999999999999987653        


Q ss_pred             ccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccc
Q 047498          141 TLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVP  191 (566)
Q Consensus       141 aLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVT  191 (566)
                               .-|+-.|.-+-..+...|++++|++.|++...  +.|++...
T Consensus        95 ---------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~  134 (168)
T d1kt1a1          95 ---------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAA  134 (168)
T ss_dssp             ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHH
T ss_pred             ---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence                     25788999999999999999999999999986  56865433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.49  E-value=0.41  Score=39.19  Aligned_cols=79  Identities=9%  Similarity=-0.157  Sum_probs=61.6

Q ss_pred             cChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047498          100 LTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDI  179 (566)
Q Consensus       100 PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM  179 (566)
                      |++..+--.=+.|.+.|+.++|+..|++......                 -|...|+-+=..|.+.|++++|++.|+..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-----------------~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------------LVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            4555555555789999999999999999876532                 46778999999999999999999999998


Q ss_pred             HhCCCCCCCcccccceec
Q 047498          180 SRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       180 ~~rGcsPdDvVTYntLI~  197 (566)
                      .+  +.|++.-+|..+=.
T Consensus        65 l~--l~p~~~~a~~~lg~   80 (201)
T d2c2la1          65 LE--LDGQSVKAHFFLGQ   80 (201)
T ss_dssp             TT--SCTTCHHHHHHHHH
T ss_pred             HH--hCCCcHHHHHHHHH
Confidence            75  57865555544433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.5  Score=40.03  Aligned_cols=97  Identities=7%  Similarity=-0.063  Sum_probs=69.7

Q ss_pred             HHHHcCCCHHHHHHHHHHHhhcCCCCcC---hhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           74 SRVSGAKDASEVLEIVAESSKRSGGVLT---VDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        74 rGLCKAGrlDEAleLL~EM~er~Gg~PD---vvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .-+...|+.++|++++++-.+.....++   ..+++.+-..+...|+.++|++.|++.....-.           .....
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~-----------~~~~~   88 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-----------HDVWH   88 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------TTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-----------hcchH
Confidence            3466799999999999987642111111   356788888999999999999999987643210           00001


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                      ....+|..+-..+...|+.++|...+.+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  119 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQ  119 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2345677888899999999999999987654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.63  E-value=0.97  Score=37.32  Aligned_cols=104  Identities=6%  Similarity=-0.031  Sum_probs=77.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhc-------C------CC-CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKR-------S------GG-VLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE  138 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er-------~------Gg-~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv  138 (566)
                      -+-+.+.|++++|++.+.+..+.       .      .. ..+...|+-+=.++.+.|+.++|+..|++..+.-      
T Consensus        34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~------  107 (169)
T d1ihga1          34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID------  107 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh------
Confidence            45678899999999998776310       0      00 1233445666678899999999999999987542      


Q ss_pred             ccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccce
Q 047498          139 NGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKV  195 (566)
Q Consensus       139 TYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntL  195 (566)
                                 .-+...|.-+=..|.+.|+.++|++.|+...+  +.|++...+..+
T Consensus       108 -----------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l  151 (169)
T d1ihga1         108 -----------PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAEL  151 (169)
T ss_dssp             -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             -----------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence                       24677899999999999999999999999988  577654444443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.02  E-value=0.42  Score=44.16  Aligned_cols=103  Identities=13%  Similarity=-0.015  Sum_probs=74.5

Q ss_pred             HcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCC----cc-cccccc-----
Q 047498           77 SGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSE----NG-TLVDRW-----  146 (566)
Q Consensus        77 CKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~Pdvv----TY-aLi~~~-----  146 (566)
                      -+.|++++|++.+++-.+.  ..-|...+..|...||+.|+.++|++.|+...+..  |+..    .| .++...     
T Consensus         7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence            4679999999999999852  23467889999999999999999999999988653  3221    11 111100     


Q ss_pred             ---------c-cCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          147 ---------K-WSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       147 ---------r-w~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                               . ...++...+-.....+-+.|+.++|.+++++....-
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                     0 012355666666777888999999999999987753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.75  E-value=1.4  Score=39.50  Aligned_cols=117  Identities=10%  Similarity=-0.035  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCcc---cccc
Q 047498           68 VEEELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENG---TLVD  144 (566)
Q Consensus        68 ~~~aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTY---aLi~  144 (566)
                      +-.....-+-+.|+.++|..+|+++.+. ........|...++.+-+.|+.+.|.++|+.+...+.. +...|   +...
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~-~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e  178 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTS-SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            3345566677889999999999998742 11111335889999999999999999999998865431 11111   1100


Q ss_pred             --cc--------------ccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 047498          145 --RW--------------KWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVG-VSP  186 (566)
Q Consensus       145 --~~--------------rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rG-csP  186 (566)
                        ..              ....-+...+...++-+.+.|.++.|+.+|++-.+.. ..|
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence              00              1122356678888888888888888888888876653 555

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.7  Score=37.00  Aligned_cols=56  Identities=14%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          110 NAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       110 ~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      +.|.+.|+.++|++.|.+......                 -|...|+-+-..|.+.|++++|++.++++++-
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~~p-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   67 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKELDP-----------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCc-----------------ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence            568899999999999999887642                 46888999999999999999999999998763

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=3.9  Score=34.70  Aligned_cols=130  Identities=10%  Similarity=-0.055  Sum_probs=83.5

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           73 LSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        73 IrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      =..+.+.|++++|++.|.+-.+..  .-+...|+-+=..+.+.|+.++|++.|++-....-.-+..-|.... ... .++
T Consensus        43 G~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~-~~~-~~~  118 (192)
T d1hh8a_          43 GCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG-LQF-KLF  118 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT-BCC-EEE
T ss_pred             HHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhh-hhc-ccc
Confidence            345678999999999999997532  2356788888889999999999999999865432110111121100 000 111


Q ss_pred             -hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceeccchhhHHHHhhcccCccee
Q 047498          153 -VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVRCPTCLIAVAVAQPQHGIQI  216 (566)
Q Consensus       153 -VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~C~tC~~A~aV~Qpq~Giql  216 (566)
                       .-+|.-+=..+.+.|++++|.+.|+...+.-..|..         . .+..|+.-.+.+.+.+.
T Consensus       119 ~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~---------~-~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         119 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH---------S-KIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG---------G-HHHHHHHHHHTTCCCCC
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch---------H-HHHHHHHHHHhhhhCCc
Confidence             233444556788999999999999988775544410         0 13466666666655554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=1.3  Score=37.24  Aligned_cols=96  Identities=15%  Similarity=-0.018  Sum_probs=71.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhcCCC--CcChhhhHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCCCccccc
Q 047498           70 EELLSRVSGAKDASEVLEIVAESSKRSGG--VLTVDECCLIINAAIDRGNTDLALSIFYAMRSS----FDQGLSENGTLV  143 (566)
Q Consensus        70 ~aLIrGLCKAGrlDEAleLL~EM~er~Gg--~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~sr----G~~PdvvTYaLi  143 (566)
                      ..+..-+...|+.++|.+.+.+.......  ......+..+-..+...|+.++|.+.|++....    +.          
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------  286 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL----------  286 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc----------
Confidence            34445667899999999999887532111  223345566788999999999999999987632    22          


Q ss_pred             cccccCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047498          144 DRWKWSRP-DVSVYTSLVQSLAASLKVSDALRLIDDISR  181 (566)
Q Consensus       144 ~~~rw~~P-DVVTYNTLIdGLCKsGRVdEAlkLLeEM~~  181 (566)
                            .| ...+|..+=..+.+.|+.++|++.|++-.+
T Consensus       287 ------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         287 ------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                  23 345788888999999999999999987644

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=1.4  Score=35.87  Aligned_cols=60  Identities=7%  Similarity=-0.114  Sum_probs=49.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSF  132 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG  132 (566)
                      .+-..+-+.|++++|.+.|....+..  .-+..+|..+..+|...|+.++|++.|++.....
T Consensus        49 ~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          49 NRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            44456778999999999999997522  1355789999999999999999999999988653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.61  Score=36.78  Aligned_cols=72  Identities=15%  Similarity=0.079  Sum_probs=58.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 047498          110 NAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEE  189 (566)
Q Consensus       110 ~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDv  189 (566)
                      +-+.+.|+.++|+.+|++....-.                 -|...|+.+=..+-+.|+.++|++.++...+.  .|++.
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~   71 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDP-----------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWG   71 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCC-----------------cchhhhhcccccccccccccccchhhhhHHHh--ccchh
Confidence            457889999999999999886532                 46778999999999999999999999999975  57677


Q ss_pred             ccccceeccch
Q 047498          190 VPFGKVVRCPT  200 (566)
Q Consensus       190 VTYntLI~C~t  200 (566)
                      ..|-.+-.|+.
T Consensus        72 ~~~~~~g~~~~   82 (117)
T d1elwa_          72 KGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            77766655554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.31  E-value=1.3  Score=39.62  Aligned_cols=87  Identities=10%  Similarity=-0.021  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCC-hHhHH
Q 047498           79 AKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD-VSVYT  157 (566)
Q Consensus        79 AGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD-VVTYN  157 (566)
                      .+..++|.+++.+..+. ...-+...|...+.-+-+.|+.++|..+|+++.....                 .| ...|.
T Consensus        77 ~~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~-----------------~~~~~~w~  138 (308)
T d2onda1          77 KLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-----------------IDPTLVYI  138 (308)
T ss_dssp             HHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-----------------SCTHHHHH
T ss_pred             ccchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-----------------CChHHHHH
Confidence            34568888999888731 1223445678888889999999999999999885422                 12 23566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047498          158 SLVQSLAASLKVSDALRLIDDISRVG  183 (566)
Q Consensus       158 TLIdGLCKsGRVdEAlkLLeEM~~rG  183 (566)
                      ..++.+-+.|.+++|+++|++....+
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~~~  164 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKAREDA  164 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            77777777777777777777766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=1.8  Score=39.53  Aligned_cols=90  Identities=4%  Similarity=-0.049  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHH
Q 047498           82 ASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQ  161 (566)
Q Consensus        82 lDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLId  161 (566)
                      +++|++.++...+..  .=+..+|+-+=..+.+.|+.++|++.|+++.+.-                 .-|...|+-+-.
T Consensus        94 ~~eal~~~~~al~~~--p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-----------------p~n~~a~~~~~~  154 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-----------------AKNYHAWQHRQW  154 (315)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----------------TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-----------------hcchHHHHHHHH
Confidence            555555555543211  0133444555555555555555555555555431                 235778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCCcccc
Q 047498          162 SLAASLKVSDALRLIDDISRVGVSPGEEVPF  192 (566)
Q Consensus       162 GLCKsGRVdEAlkLLeEM~~rGcsPdDvVTY  192 (566)
                      .+-+.|+.++|++.|+...+.  .|++.-.|
T Consensus       155 ~~~~~~~~~~Al~~~~~al~~--~p~n~~a~  183 (315)
T d2h6fa1         155 VIQEFKLWDNELQYVDQLLKE--DVRNNSVW  183 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHH--CTTCHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH--CCccHHHH
Confidence            888889999999999888874  45443333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=84.62  E-value=5.4  Score=33.26  Aligned_cols=93  Identities=12%  Similarity=-0.139  Sum_probs=69.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhhcCCCCcChhhhHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q 047498           71 ELLSRVSGAKDASEVLEIVAESSKRSGGVLTVDECCLIINAAIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSR  150 (566)
Q Consensus        71 aLIrGLCKAGrlDEAleLL~EM~er~Gg~PDvvTYNsLI~GlCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~  150 (566)
                      .+=..+.+.|++++|++.|++..+..  .-+..+|..+-..+.+.|+.++|.+.|++-.+...                 
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------------  136 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-----------------  136 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-----------------
Confidence            34456788999999999999997522  12345788888999999999999999999876532                 


Q ss_pred             CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047498          151 PDVSVYTSLVQSLAASLKVSDALRLIDDISRV  182 (566)
Q Consensus       151 PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~r  182 (566)
                      .|...+.-+..+..+.+..+.+..+.......
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_         137 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            35555555666777777777777776666553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.53  E-value=0.91  Score=41.80  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=51.6

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCCCCccccccccccCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCccc
Q 047498          112 AIDRGNTDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPDVSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVP  191 (566)
Q Consensus       112 lCKaGrVDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PDVVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVT  191 (566)
                      ..+.|++++|++.|++-.+...                 -|...+..|..-||+.|++++|++.|+...+.  .|++...
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P-----------------~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~   66 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASP-----------------KDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPG   66 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCT-----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCC-----------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence            4578999999999999887643                 48899999999999999999999999998874  5644443


Q ss_pred             c
Q 047498          192 F  192 (566)
Q Consensus       192 Y  192 (566)
                      +
T Consensus        67 ~   67 (264)
T d1zbpa1          67 A   67 (264)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=2.4  Score=38.71  Aligned_cols=101  Identities=7%  Similarity=-0.015  Sum_probs=78.1

Q ss_pred             HHHcCCCHHHHHHHHHHHhhcCCCCc-ChhhhHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCCccccccccccCCCC
Q 047498           75 RVSGAKDASEVLEIVAESSKRSGGVL-TVDECCLIINAAIDRGN-TDLALSIFYAMRSSFDQGLSENGTLVDRWKWSRPD  152 (566)
Q Consensus        75 GLCKAGrlDEAleLL~EM~er~Gg~P-DvvTYNsLI~GlCKaGr-VDeAlsLF~EM~srG~~PdvvTYaLi~~~rw~~PD  152 (566)
                      -+-+.++.++|++++++..+-.   | +...|+..-..+.+.|+ .++|+..|++....-.                 =+
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~ln---P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-----------------~~  111 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-----------------KN  111 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-----------------TC
T ss_pred             HHHhCCchHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-----------------hh
Confidence            4557899999999999998531   3 34466777777888775 8999999999876532                 25


Q ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcccccceec
Q 047498          153 VSVYTSLVQSLAASLKVSDALRLIDDISRVGVSPGEEVPFGKVVR  197 (566)
Q Consensus       153 VVTYNTLIdGLCKsGRVdEAlkLLeEM~~rGcsPdDvVTYntLI~  197 (566)
                      ..+|+-+=..+.+.|+.++|++.|+++.+  ..|++...|+-+-.
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~  154 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQW  154 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHH
Confidence            77888888889999999999999999987  57765555554443