Citrus Sinensis ID: 047515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MDSVSVYEDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEHK
Secondary Structure (PSIPRED)
ccccEEEEccccccccccccccEEEEEcccccccccccccccccccEEEccccEEEccccEEEEcccccccccccccccccccccEEEEEEcccEEEEcEEEEEccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEEEccccccccccEEEccccccccccEEEccEEEEEEEEEEEccccccccEEEEEccccccEEEEEEcccccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccEccccccccccEEEEEEcHHHHcccccccccccccEEEcccEEEEEEccccHHHHcccccccEEEEcccEEcccEEEEEEEEEEEcccEEEEEccccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEEcccccEEEcccccccccccccccHHHcccccccEEEccEEEEEEEEEEEEcccccEEEEEEEccccccEEEEEEEccHHcccccEcccEEEEcccc
Coil and Loop (DISEMBL)
MDSVSVYEDAigrstshvppadyiVRIKSYSLLAEEAIVEKYEsgafqarghkwRQGGIQFIEAKagkkfknsnrgrnkeeedsslFVCYNTHIikltgetcyinksknvKDHISLYLAVAdtssltfgwEVYAVFCLFLLYQNQDSYLVVQDAmgkerrfngvklewgfdqfipleafndasngylvddtcvfGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQvfsagehk
Flexible Loop (DISEMBL)
MDSVSVYEDaigrstshvppadyIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFieakagkkfknsnrgrnkeeedsslfVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKErniikgeclsmaNITSSCKFVWMGENFSKLderrqesqvfsagehk
Low Complexity Region (SEG)
MDSVSVYEDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEHK
Disordered region (IsUnstruct)
*****************VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEA*********************LFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENF*******************
Disordered Region (DISOPRED)
****S****AI****SHVPPADYIVRIKSYSL****************ARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEH*
Disordered Region (DISEMBL)
MDSVSVYEDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKF*************SSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLD***************
Disordered Region (DISPRO)
************RST*HVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSVSVYEDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.375	0.083	0.422	2e-14
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.375	0.083	0.381	4e-13

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 106 KSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK 165
           K  NV DH+S+YL V+D +SL +GW  YA F L ++ Q    Y V ++    + +FN  +
Sbjct: 91  KGNNV-DHLSMYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKET---QHQFNARE 146

Query: 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKE 202
            +WGF  F+PL    D S GYLV+DT +  AEV V++
Sbjct: 147 SDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRK 183

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 4/97 (4%)

Query: 106 KSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK 165
           K  NV DH+S+YL VAD ++L +GW  Y+ F L ++ Q  + Y + ++    + +FN  +
Sbjct: 90  KGNNV-DHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKET---QHQFNARE 145

Query: 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKE 202
            +WGF  F+PL    + + GYLV+DT +  AEV V++
Sbjct: 146 SDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
297830352	309	hypothetical protein ARALYDRAFT_479214 [	0.786	0.631	0.479	2e-51
21537273	309	unknown [Arabidopsis thaliana]	0.782	0.627	0.477	7e-51
255636923	276	unknown [Glycine max]	0.798	0.717	0.462	2e-46
356519881	310	PREDICTED: uncharacterized protein LOC10	0.798	0.638	0.462	2e-46
18401489	309	TRAF-like family protein [Arabidopsis th	0.782	0.627	0.477	4e-46
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.794	0.623	0.446	5e-46
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.794	0.623	0.446	5e-46
11994555	304	unnamed protein product [Arabidopsis tha	0.774	0.631	0.476	1e-45
255556544	455	nucleic acid binding protein, putative [	0.75	0.408	0.457	8e-45
357479139	311	Ubiquitin carboxyl-terminal hydrolase [M	0.798	0.636	0.442	4e-44

>gi|297830352|ref|XP_002883058.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata] gi|297328898|gb|EFH59317.1| hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 150/242 (61%), Gaps = 47/242 (19%)

Query: 8   EDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAG 67
            D I +S S  PP  Y+V+I+S+SLL + AI E+YE+ +F+A G+KW+            
Sbjct: 7   HDEIIKSISDAPPTHYMVKIESFSLLTKHAI-ERYETESFEAGGYKWK------------ 53

Query: 68  KKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT 127
                               V Y              NKSKN KDH+S+YLA+AD+SSL+
Sbjct: 54  -------------------LVLYPNG-----------NKSKNTKDHVSVYLALADSSSLS 83

Query: 128 FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYL 187
            GWEVYAVF L+LL QN+D+YL++Q   G ERRF+ VK EWGFD+FIP   F+DASNGYL
Sbjct: 84  PGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHAVKREWGFDKFIPTGTFSDASNGYL 140

Query: 188 VDDTCVFGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGE 246
           ++DTC+FGA+VFV KER   +GECLSM    +S K VW  ENFSKLD+   +S  F AG+
Sbjct: 141 MEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGD 200

Query: 247 HK 248
            K
Sbjct: 201 RK 202

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537273|gb|AAM61614.1| unknown [Arabidopsis thaliana]

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 150/241 (62%), Gaps = 47/241 (19%)

Query: 9   DAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGK 68
           D I +S S  PP  Y+V+I+S+SLL + AI E+YE+ +F+A G+KW+             
Sbjct: 8   DEIIKSISDAPPTHYMVKIESFSLLTKHAI-ERYETESFEAGGYKWK------------- 53

Query: 69  KFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTF 128
                              V Y              NKSKN KDH+S+YLA+AD+SSL+ 
Sbjct: 54  ------------------LVLYPNG-----------NKSKNTKDHVSVYLALADSSSLSP 84

Query: 129 GWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLV 188
           GWEVYAVF L+LL QN+D+YL++Q   G ERRF+ VK EWGFD+FIP   F+D+SNGYL+
Sbjct: 85  GWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDSSNGYLM 141

Query: 189 DDTCVFGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEH 247
           +DTC+FGA+VFV KER   +GECLSM    +S K VW  ENFSKLD+   +S  F AG+ 
Sbjct: 142 EDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDR 201

Query: 248 K 248
           K
Sbjct: 202 K 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636923|gb|ACU18794.1| unknown [Glycine max]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/242 (46%), Positives = 141/242 (58%), Gaps = 44/242 (18%)

Query: 8   EDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAG 67
           +DAI RST   PPA Y+++I+S+SLLA+ +I E+YESG F+A G+KW+            
Sbjct: 4   QDAIPRSTVDAPPAHYVMKIQSFSLLAKNSI-ERYESGKFEAGGYKWK------------ 50

Query: 68  KKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT 127
                               V Y +            NKSKN+++HISLYLA+ DTSSL 
Sbjct: 51  -------------------LVLYPSG-----------NKSKNIREHISLYLALDDTSSLH 80

Query: 128 FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYL 187
            GWE+Y  F  FL  Q  D+YLV  D +  ERRF+ +K EWG DQFIPL  FN AS GYL
Sbjct: 81  HGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGIDQFIPLRDFNLASKGYL 140

Query: 188 VDDTCVFGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGE 246
           VDDTC FGAEVFV KER+  KGECL M       K ++  +N SKLD    +S+ F+AG 
Sbjct: 141 VDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFDNLSKLDLECYDSKPFNAGN 200

Query: 247 HK 248
            K
Sbjct: 201 FK 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519881|ref|XP_003528597.1| PREDICTED: uncharacterized protein LOC100779090 [Glycine max]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/242 (46%), Positives = 141/242 (58%), Gaps = 44/242 (18%)

Query: 8   EDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAG 67
           +DAI RST   PPA Y+++I+S+SLLA+ +I E+YESG F+A G+KW+            
Sbjct: 4   QDAIPRSTVDAPPAHYVMKIQSFSLLAKNSI-ERYESGKFEAGGYKWK------------ 50

Query: 68  KKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT 127
                               V Y +            NKSKN+++HISLYLA+ DTSSL 
Sbjct: 51  -------------------LVLYPSG-----------NKSKNIREHISLYLALDDTSSLH 80

Query: 128 FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYL 187
            GWE+Y  F  FL  Q  D+YLV  D +  ERRF+ +K EWG DQFIPL  FN AS GYL
Sbjct: 81  HGWEIYVNFRFFLHDQTNDNYLVGPDTVRNERRFHKMKAEWGIDQFIPLRDFNLASKGYL 140

Query: 188 VDDTCVFGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGE 246
           VDDTC FGAEVFV KER+  KGECL M       K ++  +N SKLD    +S+ F+AG 
Sbjct: 141 VDDTCAFGAEVFVCKERSTGKGECLVMMKEAILYKHLYEFDNLSKLDLECYDSKPFNAGN 200

Query: 247 HK 248
            K
Sbjct: 201 FK 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401489|ref|NP_566576.1| TRAF-like family protein [Arabidopsis thaliana] gi|332642426|gb|AEE75947.1| TRAF-like family protein [Arabidopsis thaliana]

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/241 (47%), Positives = 150/241 (62%), Gaps = 47/241 (19%)

Query: 9   DAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGK 68
           D I +S S  PP  Y+V+I+S+SLL + AI E+YE+ +F+A G+KW+             
Sbjct: 8   DEIIKSISDAPPTHYMVKIESFSLLTKHAI-ERYETESFEAGGYKWK------------- 53

Query: 69  KFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTF 128
                              V Y              NKSKN KDH+S+YL++AD+SSL+ 
Sbjct: 54  ------------------LVLYPNG-----------NKSKNTKDHVSVYLSLADSSSLSP 84

Query: 129 GWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLV 188
           GWEVYAVF L+LL QN+D+YL++Q   G ERRF+ VK EWGFD+FIP   F+DASNGYL+
Sbjct: 85  GWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDASNGYLM 141

Query: 189 DDTCVFGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEH 247
           +DTC+FGA+VFV KER   +GECLSM    +S K VW  ENFSKLD+   +S  F AG+ 
Sbjct: 142 EDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDR 201

Query: 248 K 248
           K
Sbjct: 202 K 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 142/242 (58%), Gaps = 45/242 (18%)

Query: 9   DAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGK 68
           D I R  S VPPA Y V+I+S+SLL + + V+++ESG F+A G+KW+             
Sbjct: 10  DEISRYVSDVPPAHYTVKIESFSLLTKNS-VDQFESGEFEAGGYKWK------------- 55

Query: 69  KFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTF 128
                              +  + H           +KSKN  DHISLYL +A T SL  
Sbjct: 56  -------------------LVLHPHG----------DKSKNGNDHISLYLEIAGTDSLQP 86

Query: 129 GWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLV 188
            WEV+ V+ LFLL QN+D+YL V+D   K RRF G+K +WGFD++I L+ F ++SNGYLV
Sbjct: 87  SWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYISLKEFKESSNGYLV 146

Query: 189 DDTCVFGAEVFVKERNII--KGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGE 246
           DD CVFGAEVFV + N    KGECLSM     + K VW  +NFSKLD    ES++F+AG+
Sbjct: 147 DDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWKIDNFSKLDAESYESKIFNAGD 206

Query: 247 HK 248
            K
Sbjct: 207 KK 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 142/242 (58%), Gaps = 45/242 (18%)

Query: 9   DAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGK 68
           D I R  S VPPA Y V+I+S+SLL + + V+++ESG F+A G+KW+             
Sbjct: 10  DEISRYVSDVPPAHYTVKIESFSLLTKNS-VDQFESGEFEAGGYKWK------------- 55

Query: 69  KFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTF 128
                              +  + H           +KSKN  DHISLYL +A T SL  
Sbjct: 56  -------------------LVLHPHG----------DKSKNGNDHISLYLEIAGTDSLQP 86

Query: 129 GWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLV 188
            WEV+ V+ LFLL QN+D+YL V+D   K RRF G+K +WGFD++I L+ F ++SNGYLV
Sbjct: 87  SWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYISLKEFKESSNGYLV 146

Query: 189 DDTCVFGAEVFVKERNII--KGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGE 246
           DD CVFGAEVFV + N    KGECLSM     + K VW  +NFSKLD    ES++F+AG+
Sbjct: 147 DDVCVFGAEVFVCKENFKGGKGECLSMIKSPVTYKHVWKIDNFSKLDAESYESKIFNAGD 206

Query: 247 HK 248
            K
Sbjct: 207 KK 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994555|dbj|BAB02742.1| unnamed protein product [Arabidopsis thaliana]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/239 (47%), Positives = 149/239 (62%), Gaps = 47/239 (19%)

Query: 11  IGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKF 70
           I +S S  PP  Y+V+I+S+SLL + AI E+YE+ +F+A G+KW+               
Sbjct: 5   IIKSISDAPPTHYMVKIESFSLLTKHAI-ERYETESFEAGGYKWK--------------- 48

Query: 71  KNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGW 130
                            V Y              NKSKN KDH+S+YL++AD+SSL+ GW
Sbjct: 49  ----------------LVLYPNG-----------NKSKNTKDHVSVYLSLADSSSLSPGW 81

Query: 131 EVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDD 190
           EVYAVF L+LL QN+D+YL++Q   G ERRF+ VK EWGFD+FIP   F+DASNGYL++D
Sbjct: 82  EVYAVFRLYLLDQNKDNYLILQ---GNERRFHSVKREWGFDKFIPTGTFSDASNGYLMED 138

Query: 191 TCVFGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEHK 248
           TC+FGA+VFV KER   +GECLSM    +S K VW  ENFSKLD+   +S  F AG+ K
Sbjct: 139 TCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFSKLDKESYDSNAFFAGDRK 197

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556544|ref|XP_002519306.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541621|gb|EEF43170.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/236 (45%), Positives = 137/236 (58%), Gaps = 50/236 (21%)

Query: 14  STSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNS 73
           + S   P  Y V+I+ +SLLA    VEKYESG+F+A G+KW+                  
Sbjct: 162 TMSDASPTHYTVKIQLFSLLA----VEKYESGSFEAGGYKWK------------------ 199

Query: 74  NRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVY 133
                         V Y              NKSKNV +H+SLY+A+AD+S+L  GWEV+
Sbjct: 200 -------------LVLYPKG-----------NKSKNVMEHLSLYIAMADSSNLQLGWEVH 235

Query: 134 AVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCV 193
            VF LFLL Q +D+YL++    GKE RF+G +LEWGFDQ IPL    D  NGYLV+DTCV
Sbjct: 236 VVFRLFLLDQIRDNYLILP---GKECRFHGFRLEWGFDQLIPLATLKDTKNGYLVEDTCV 292

Query: 194 FGAEVFV-KERNIIKGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGEHK 248
           FGAEVFV KE    KGECLSM   +S+ K +W  ENFSKLD    +S+ F AG+ +
Sbjct: 293 FGAEVFVRKESCTGKGECLSMIKSSSTSKNLWRFENFSKLDAECNDSKTFVAGDQR 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479139|ref|XP_003609855.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355510910|gb|AES92052.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 107/242 (44%), Positives = 138/242 (57%), Gaps = 44/242 (18%)

Query: 8   EDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAG 67
           ++ I RS     P  YI++I+S+SLL   +I E+YESG F+A GHKW+            
Sbjct: 5   DEGISRSIVEASPVHYIMKIQSFSLLTTNSI-ERYESGRFEAGGHKWK------------ 51

Query: 68  KKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT 127
                               V Y +            NKSKNVKDHISLYLA+ ++SSL 
Sbjct: 52  -------------------LVLYPSG-----------NKSKNVKDHISLYLALEESSSLH 81

Query: 128 FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYL 187
            GWE+Y  F LF+  QN D+YLV+QD + KE+RF+ +K+EWGFDQFIPL+ FN  S GYL
Sbjct: 82  PGWEIYVNFKLFVYDQNNDNYLVLQDDVKKEKRFHRMKVEWGFDQFIPLKDFNIGSKGYL 141

Query: 188 VDDTCVFGAEVFVKERNII-KGECLSMANITSSCKFVWMGENFSKLDERRQESQVFSAGE 246
           +DD C FGAEVFV   N   KGE L M       K VW  ++FSKLD    +S+ F+ G 
Sbjct: 142 LDDICAFGAEVFVCRENYTGKGESLIMMKDALPYKHVWEIKDFSKLDSECCDSKPFNVGN 201

Query: 247 HK 248
           +K
Sbjct: 202 YK 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.568	0.456	0.620	6.9e-55
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.552	0.391	0.380	5.4e-25
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.560	0.396	0.359	1.9e-24
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.552	0.326	0.359	2.3e-23
TAIR|locus:2151049	333	AT5G26290 "AT5G26290" [Arabido	0.548	0.408	0.323	6.7e-22
TAIR|locus:2092344	379	AT3G20370 "AT3G20370" [Arabido	0.548	0.358	0.330	1.2e-19
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.556	0.378	0.335	2.1e-19
TAIR|locus:2092329	363	AT3G20360 "AT3G20360" [Arabido	0.5	0.341	0.361	3.2e-19
TAIR|locus:2056008	411	AT2G04190 "AT2G04190" [Arabido	0.612	0.369	0.360	3.4e-18
TAIR|locus:2151054	349	AT5G26300 "AT5G26300" [Arabido	0.548	0.389	0.330	1.2e-17

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 90/145 (62%), Positives = 113/145 (77%)

Query:   105 NKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGV 164
             NKSKN KDH+S+YL++AD+SSL+ GWEVYAVF L+LL QN+D+YL++Q   G ERRF+ V
Sbjct:    61 NKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ---GNERRFHSV 117

Query:   165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KERNIIKGECLSMANITSSCKFV 223
             K EWGFD+FIP   F+DASNGYL++DTC+FGA+VFV KER   +GECLSM    +S K V
Sbjct:   118 KREWGFDKFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHV 177

Query:   224 WMGENFSKLDERRQESQVFSAGEHK 248
             W  ENFSKLD+   +S  F AG+ K
Sbjct:   178 WKIENFSKLDKESYDSNAFFAGDRK 202

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
 Identities = 54/142 (38%), Positives = 76/142 (53%)

Query:   103 YINKSKNV--KDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERR 160
             Y+N +KN    DHISLY  + +T+SL  GWEV     LF+       YL V D + K  R
Sbjct:    96 YVNGNKNDGGNDHISLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTDGLVK--R 153

Query:   161 FNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSC 220
             +N  K EWGF Q IP   F +A+ GYL  DT  FGAE+F+ +    + +   ++N  ++ 
Sbjct:   154 YNNAKKEWGFGQLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQQQEKVTFISNPPNNV 213

Query:   221 KFVWMGENFSKLDERRQESQVF 242
              F W    FS L+++   S  F
Sbjct:   214 -FTWKILRFSTLEDKFYYSDDF 234

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 51/142 (35%), Positives = 73/142 (51%)

Query:   105 NKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGV 164
             N    + +HISLY  + +T +L  GWEV     LF+  +    YL V D  G  +R+N  
Sbjct:   101 NPKGGINNHISLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTD--GTVKRYNDA 158

Query:   165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVW 224
             K EWGF Q I L  F +A+ GYLV DT  FGAE+F+      + +   ++N   +  F W
Sbjct:   159 KKEWGFTQLISLPTFYNANEGYLVQDTASFGAEIFIVNPTEKQEKVTFISNPPDNV-FTW 217

Query:   225 MGENFSKLDERRQESQVFSAGE 246
                 FS L+++   S  F  G+
Sbjct:   218 KILRFSTLEDKFYYSDDFLVGD 239

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
 Identities = 51/142 (35%), Positives = 78/142 (54%)

Query:   103 YINKSKNV--KDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERR 160
             Y+N ++N    +HISLY+ + +T SL  GWEV     LF+    Q  YL+V+D + K  R
Sbjct:   166 YVNGNQNDGGNNHISLYVRIEETESLPKGWEVNVELKLFVYNGKQRKYLIVKDGIVK--R 223

Query:   161 FNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSC 220
             +N  K EWG+ + IPL  F D + GYL  D   FGAE+F      ++ +   ++N  ++ 
Sbjct:   224 YNDAKKEWGYGKLIPLTTFLDTNEGYLEQDIASFGAEIFSGTAVQVQEKVTFISNPPNNV 283

Query:   221 KFVWMGENFSKLDERRQESQVF 242
              F W   +FS L+++   S  F
Sbjct:   284 -FTWKILHFSNLEDKFYYSDDF 304

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151049 AT5G26290 "AT5G26290" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
 Identities = 46/142 (32%), Positives = 72/142 (50%)

Query:   105 NKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGV 164
             N+    KDH+SLY  + +T SL  GWEV     LF+     + YL+V       +R+N  
Sbjct:    93 NEKDGGKDHVSLYAKIVETESLPVGWEVNVDLKLFVYNGKLNKYLIVT-----VKRYNNA 147

Query:   165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSCKFVW 224
               E G+ Q IP   F D ++GY   DT  FGAE+++ +    K +   ++N   +  F W
Sbjct:   148 TKELGYGQLIPQSTFYDGNDGYREQDTGTFGAEIYIVKPAQQKEKVTFISNPPDNV-FTW 206

Query:   225 MGENFSKLDERRQESQVFSAGE 246
                +FS L+++  +S  F  G+
Sbjct:   207 KILHFSTLEDKVYQSNEFLVGD 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2092344 AT3G20370 "AT3G20370" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 47/142 (33%), Positives = 72/142 (50%)

Query:   105 NKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGV 164
             NK  +   ++SLY+A+ D S+L    E+YA    ++  +N+  Y  +QD      +F+  
Sbjct:   128 NKKDSGSGYLSLYVAI-DNSTLG-QQEIYADLRFYIFNKNERKYFTIQDT--DVWKFSVF 183

Query:   165 KLEWGFDQFIPLEAFNDASNGYLVD-DTCVFGAEVFVKERNIIKGECLSMANITSSCKFV 223
             K  WGF Q +P++ F D + GYL D D C FG +V +      K E  S+     + +F 
Sbjct:   184 KTMWGFSQVLPIDTFKDPTKGYLYDGDHCEFGVDVTMPSL-YEKSELFSVTENFLNPRFT 242

Query:   224 WMGENFSKLDERRQESQVFSAG 245
             W    FS L +    S+VFS G
Sbjct:   243 WTIRGFSTLLKNSYLSEVFSIG 264

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 48/143 (33%), Positives = 70/143 (48%)

Query:   105 NKSKNVKDHISLYLAVADTS-SLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNG 163
             N+       IS+Y+   +T  S T   EV+A    F+  + ++ Y  +QD   + +RFN 
Sbjct:   137 NEKDKGSGFISMYVEFDNTKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDV--EVKRFNA 194

Query:   164 VKLEWGFDQFIPLEAFNDASNGYLVD-DTCVFGAEVFVKERNIIKGECLSMANITSSCKF 222
             ++  WG  Q + LE FND  NGY  + + C FG +V V    I K E +S        KF
Sbjct:   195 LRTVWGLSQVLSLETFNDLENGYTFEGEQCEFGVDVMVASP-ITKWEVVSFDEKLDILKF 253

Query:   223 VWMGENFSKLDERRQESQVFSAG 245
              W  ++FS L E    S+ FS G
Sbjct:   254 SWSVKDFSVLKEEFYVSERFSMG 276

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092329 AT3G20360 "AT3G20360" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 47/130 (36%), Positives = 67/130 (51%)

Query:   105 NKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDS-YLVVQDAMGKERRFNG 163
             NK+ N   HISLY+ V D S+LT   E   V   F ++  +++ Y  +QD      RF+ 
Sbjct:   109 NKNDNGTGHISLYV-VLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDT--DVWRFSA 165

Query:   164 VKLEWGFDQFIPLEAFNDASNGYLVD-DTCVFGAEVFVKERNIIKGECLSMANITSSCKF 222
             +K  WGF + +PL  FN+  NGYL D D C FG +V +      K E  S+     S +F
Sbjct:   166 IKRMWGFSKVLPLITFNNLKNGYLYDVDHCEFGVDVIIPPF-YEKSEVFSVTKSFPSPRF 224

Query:   223 VWMGENFSKL 232
              W  + +S L
Sbjct:   225 TWYIQGYSTL 234

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056008 AT2G04190 "AT2G04190" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 58/161 (36%), Positives = 87/161 (54%)

Query:    76 GRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNV--KDHISLYLAVADTSSLTFGWEVY 133
             GR +E  +SS+F  Y  H  +L     Y+N ++N    +HISLYL   +T  LT+   + 
Sbjct:   134 GR-EEPYESSVFEAYFEHKWRLI---LYVNGNQNDGGSNHISLYLRSEETDHLTYDGSIN 189

Query:   134 AVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCV 193
              V  LF+    QD YL V D  G ++R+N    EWG+ + IPL  F D S GYL  DT  
Sbjct:   190 FVLKLFVYNGKQDKYLTVTD--GIQKRYNYKNKEWGYGKLIPLSTFLDTSQGYLEQDTAS 247

Query:   194 FGAEVFVKERNIIKGECLSMANITSSCKFVWMGENFSKLDE 234
             FGAE+F+     ++ +   ++N  ++  F W   +FS L++
Sbjct:   248 FGAEIFLCPPIQVQEKVTFISNPPNNV-FTWKILHFSTLED 287

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2151054 AT5G26300 "AT5G26300" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 47/142 (33%), Positives = 73/142 (51%)

Query:   103 YINKSKNVK--DHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERR 160
             Y+N + N    DHISLY+ + +T  L  GWEV     LF+     + YL + D  G  + 
Sbjct:    96 YVNGNPNDSGNDHISLYVRIEETEYLPRGWEVNVDLKLFIHNGKLNKYLAISD--GTLKL 153

Query:   161 FNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIKGECLSMANITSSC 220
             +N  K EWGF Q IP   F + + GY+  D   FGAE+F+ +    + +   ++N  ++ 
Sbjct:   154 YNDAKREWGFGQLIPHVTFYN-TYGYIEQDIGSFGAEIFIVKPAQQQEKVTFISNPPTNV 212

Query:   221 KFVWMGENFSKLDERRQESQVF 242
              F W   +FS L+++   S  F
Sbjct:   213 -FTWKILHFSILEDKFYYSDDF 233

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.3__1915__AT3G17380.1 annotation not avaliable (309 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	248
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	1e-14
pfam00917	116	pfam00917, MATH, MATH domain	2e-04
cd03775	134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	0.003

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 42/176 (23%), Positives = 59/176 (33%), Gaps = 53/176 (30%)

Query: 23  YIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEE 82
           +  +I ++S L  E       S  F+  G+KWR                           
Sbjct: 3   HTWKIVNFSELEGE----SIYSPPFEVGGYKWR--------------------------- 31

Query: 83  DSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLY 142
                       I++     Y N      D++SLYL +    S    W V A F L L+ 
Sbjct: 32  ------------IRI-----YPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74

Query: 143 QNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
           QN    L           F+     WGF +FI  +   D  + YLVDD+     EV
Sbjct: 75  QNGGKSLSKS---FTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 111 KDHISLYLAVADTSSLTF-GWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWG 169
              + LYL           GW +   F L L+  N  S      +    +        +G
Sbjct: 34  GGFLGLYLHCEKGEKDELLGWSIETEFTLKLVSDNGKSLTKRNKSHVFTKPTG-----YG 88

Query: 170 FDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200
           + +FI  +      N Y+VDDT +  AEV +
Sbjct: 89  WGKFISWDDLE---NDYVVDDTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 108 KNVKDHISLYLA----VADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNG 163
            +    +S+YL       + + L   W V A F L +      S   +Q +     RFN 
Sbjct: 38  NSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPS---IQLSNVAHHRFNA 94

Query: 164 VKLEWGFDQFIPLE 177
              +WGF +FI L 
Sbjct: 95  EDKDWGFTRFIELR 108

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.95
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.94
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.92
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.89
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.88
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.86
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.86
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.85
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.85
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.83
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.83
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.83
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.79
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.79
smart00061	95	MATH meprin and TRAF homology.	99.73
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.67
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.52
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.43
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	99.04
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.5
KOG0297	391	consensus TNF receptor-associated factor [Signal t	90.01

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.95  E-value=1.3e-26  Score=188.89  Aligned_cols=130  Identities=18%  Similarity=0.325  Sum_probs=108.5

Q ss_pred             CcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccc
Q 047515           20 PADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTG   99 (248)
Q Consensus        20 ~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~   99 (248)
                      .++|+|+|+|||.+.     +.++|++|.+||++|+|                            .+|   |        
T Consensus         2 ~~~~~~~I~~~S~l~-----e~~~S~~f~vgG~~W~i----------------------------~~~---P--------   37 (137)
T cd03772           2 EATFSFTVERFSRLS-----ESVLSPPCFVRNLPWKI----------------------------MVM---P--------   37 (137)
T ss_pred             CcEEEEEECCcccCC-----CcEECCCEEECCcceEE----------------------------EEE---e--------
Confidence            579999999999993     57999999999999999                            777   8        


Q ss_pred             eeecccccC-CCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCchh
Q 047515          100 ETCYINKSK-NVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEA  178 (248)
Q Consensus       100 ~~~~G~~~~-~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~  178 (248)
                         +|+... ...++|||||.|.+.. ....|++.|+|+|+|+||+++.......   ..+.|.....+|||.+||+|++
T Consensus        38 ---~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~  110 (137)
T cd03772          38 ---RNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSE  110 (137)
T ss_pred             ---CCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCCCCcccEEEe---eeeEEcCCCCCccchheeEHHH
Confidence               775421 2348999999997643 3348999999999999998644433332   5578977778999999999999


Q ss_pred             hccCCCCceeCCEEEEEEEEEE
Q 047515          179 FNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       179 L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      |+++++|||+||+|+|+|+|.|
T Consensus       111 L~~~~sgyl~~D~l~Ie~~V~~  132 (137)
T cd03772         111 VTDPEKGFIEDDTITLEVYVQA  132 (137)
T ss_pred             hcCCCCCcEECCEEEEEEEEEe
Confidence            9988899999999999999998

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.94  E-value=1.9e-26  Score=187.78  Aligned_cols=125  Identities=28%  Similarity=0.463  Sum_probs=106.7

Q ss_pred             EEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccccee
Q 047515           22 DYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGET  101 (248)
Q Consensus        22 ~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~  101 (248)
                      +|+|+|+|||.+.     +.+.|++|.+|||.|+|                            .+|   |          
T Consensus         2 ~f~w~I~~fS~~~-----~~~~S~~F~vGG~~W~l----------------------------~~y---P----------   35 (134)
T cd03775           2 SFTWRIKNWSELE-----KKVHSPKFKCGGFEWRI----------------------------LLF---P----------   35 (134)
T ss_pred             cEEEEECCcccCC-----cceeCCCEEECCeeEEE----------------------------EEe---C----------
Confidence            6999999999974     58999999999999999                            777   9          


Q ss_pred             ecccccCCCCCcEEEEEEecCCCC----CCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCch
Q 047515          102 CYINKSKNVKDHISLYLAVADTSS----LTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLE  177 (248)
Q Consensus       102 ~~G~~~~~~~~~lSlyL~~~~~~~----~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~  177 (248)
                       +|+..   .+||||||.+++.+.    .+.+|.+.|+|.|+|+||.++.......   ..++|+....+|||.+||+++
T Consensus        36 -~G~~~---~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~  108 (134)
T cd03775          36 -QGNSQ---TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELR  108 (134)
T ss_pred             -CCCCC---CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceEcc---ceeEeCCCCCCCChhHcccHH
Confidence             88642   689999999976543    2568999999999999998776544332   678998877899999999999


Q ss_pred             hhccC----CCCceeCCEEEEEEEEE
Q 047515          178 AFNDA----SNGYLVDDTCVFGAEVF  199 (248)
Q Consensus       178 ~L~~~----~~gfLvnD~l~i~a~V~  199 (248)
                      +|++|    ++|||+||+|+|+++|+
T Consensus       109 ~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775         109 KLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             HHcccccCCCCceeECCEEEEEEEEC
Confidence            99965    57999999999999984

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.92  E-value=3.6e-24  Score=174.70  Aligned_cols=132  Identities=28%  Similarity=0.384  Sum_probs=108.1

Q ss_pred             CCCcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccc
Q 047515           18 VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHI   94 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~   94 (248)
                      .++.+|+|+|+|||.+.+ ..++.+.|++|.+||+   +|+|                            .+|   |   
T Consensus         2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l----------------------------~~y---P---   46 (139)
T cd03774           2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCL----------------------------RVN---P---   46 (139)
T ss_pred             ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEE----------------------------EEe---C---
Confidence            356789999999999875 3457999999999995   9999                            777   9   


Q ss_pred             ccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccC
Q 047515           95 IKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFI  174 (248)
Q Consensus        95 ~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi  174 (248)
                              +|+.. +..+|+||||.+++..    .+.+.|+|+|.|+||+++.......  ...+.|.. ..+|||.+||
T Consensus        47 --------~G~~~-~~~~~iSlyL~l~~~~----~~~v~a~f~~~l~n~~~~~~~~~~~--~~~~~f~~-~~~wG~~~fi  110 (139)
T cd03774          47 --------KGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFI  110 (139)
T ss_pred             --------CCCCC-CCCCeEEEEEEEccCC----CCcEEEEEEEEEEecCCCeeeeecc--cCcEeCCC-CCccCHHHee
Confidence                    88653 3568999999997532    3679999999999999765432221  13577864 5789999999


Q ss_pred             CchhhccCCCCceeCCEEEEEEEEEE
Q 047515          175 PLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       175 ~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      ++++|.++.+|||+||+++|+|+|.|
T Consensus       111 ~~~~L~~~~~g~l~dD~l~I~c~I~V  136 (139)
T cd03774         111 RRDFLLDEANGLLPDDKLTLFCEVSV  136 (139)
T ss_pred             eHHHhhhhhcccccCCEEEEEEEEEE
Confidence            99999988889999999999999998

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.89  E-value=1e-22  Score=163.87  Aligned_cols=127  Identities=18%  Similarity=0.331  Sum_probs=102.8

Q ss_pred             CCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccc
Q 047515           18 VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKL   97 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~   97 (248)
                      ++-.+++|+|.|||.+++.  ++.++|++|.+||++|+|                            .+|   |      
T Consensus         2 ~~~~~~~~~I~~fS~~~~~--~~~~~S~~F~vgG~~W~i----------------------------~~y---P------   42 (132)
T cd03773           2 PPYDSATFTLENFSTLRQS--ADPVYSDPLNVDGLCWRL----------------------------KVY---P------   42 (132)
T ss_pred             CCCcccEEEECChhhhhcC--CcceeCCCeEeCCccEEE----------------------------EEE---C------
Confidence            3556799999999999652  368999999999999999                            888   9      


Q ss_pred             cceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCch
Q 047515           98 TGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLE  177 (248)
Q Consensus        98 ~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~  177 (248)
                           +|+.. ...+|||+||.+.+.    ..|.+.++|+|+|+||.++.......   ..+.|.. ..+|||.+|++++
T Consensus        43 -----~G~~~-~~~~~lSl~L~l~~~----~~~~~~~~~~l~llnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~  108 (132)
T cd03773          43 -----DGNGE-VRGNFLSVFLELCSG----LGEASKYEYRVEMVHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLD  108 (132)
T ss_pred             -----CCCCC-CCCCEEEEEEEeecC----CCCceeEEEEEEEEcCCCCccceEEe---ccccccC-CCCcCHHHhccHH
Confidence                 88653 346899999998753    23678899999999996555444332   5677865 5679999999999


Q ss_pred             hhccCCCCceeC--CEEEEEEEEE
Q 047515          178 AFNDASNGYLVD--DTCVFGAEVF  199 (248)
Q Consensus       178 ~L~~~~~gfLvn--D~l~i~a~V~  199 (248)
                      +|.+  +|||+|  |+|+|+|.|+
T Consensus       109 ~L~~--~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773         109 LLIN--EGYLLPENDTLILRFSVR  130 (132)
T ss_pred             HHhh--CCCcCCCCCEEEEEEEEe
Confidence            9974  799999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.88  E-value=2.1e-22  Score=165.28  Aligned_cols=133  Identities=26%  Similarity=0.376  Sum_probs=102.0

Q ss_pred             cEEEEEEcCccccccc---ccceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515           21 ADYIVRIKSYSLLAEE---AIVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII   95 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~---~~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~   95 (248)
                      ++|+|+|++||.+++.   +.++.++|++|.+|  ||+|+|                            .+|   |    
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i----------------------------~~y---P----   45 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCL----------------------------RLY---L----   45 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEE----------------------------EEE---e----
Confidence            5899999999999762   33478999999999  999999                            777   9    


Q ss_pred             cccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCC--ceeEEec--cCCceeEec-----CCC
Q 047515           96 KLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQD--SYLVVQD--AMGKERRFN-----GVK  165 (248)
Q Consensus        96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~--~~~~~~~--~~~~~~~F~-----~~~  165 (248)
                             +|+.. ...+||||||.+.+... ....|.+.|+|+|.|+||.++  .......  .....+.|.     ...
T Consensus        46 -------~G~~~-~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  117 (149)
T cd00270          46 -------NGDGT-GKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENN  117 (149)
T ss_pred             -------CCCCC-CCCCEEEEEEEEeccCCCccccCCccceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCC
Confidence                   88643 34579999999976543 235799999999999999874  2221110  001123454     145


Q ss_pred             CCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                      .+|||.+|+++++|++  .|||+||+|+|+|+|
T Consensus       118 ~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v  148 (149)
T cd00270         118 IGFGYPEFVPLEKLES--RGYVKDDTLFIKVEV  148 (149)
T ss_pred             CCcCcceEeEHHHhcc--CCCEeCCEEEEEEEE
Confidence            7899999999999984  589999999999998

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.86  E-value=1.5e-21  Score=161.19  Aligned_cols=134  Identities=20%  Similarity=0.272  Sum_probs=101.6

Q ss_pred             cEEEEEEcCcccccc-cccce--EEEcCcEEE--cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515           21 ADYIVRIKSYSLLAE-EAIVE--KYESGAFQA--RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII   95 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~-~~~~~--~~~S~~F~v--gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~   95 (248)
                      ++|+|+|.|||.+++ .+.++  .++|++|.+  |||+|+|                            .+|   |    
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i----------------------------~~y---P----   45 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCA----------------------------RLN---L----   45 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEE----------------------------EEE---e----
Confidence            579999999998765 34445  488999996  7999999                            788   9    


Q ss_pred             cccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEe--ccCCceeEecC-----CCCC
Q 047515           96 KLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQ--DAMGKERRFNG-----VKLE  167 (248)
Q Consensus        96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~--~~~~~~~~F~~-----~~~~  167 (248)
                             +|... +..+|||+||.+.+... ...+|.+.|+|+|.|++|.++......  ......+.|..     .+..
T Consensus        46 -------~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~  117 (147)
T cd03776          46 -------SLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKG  117 (147)
T ss_pred             -------CCCCC-CCCCEEEEEEEEeccCCCcccCCcccceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCC
Confidence                   88754 35689999999976432 234799999999999999864332111  11112345752     3468


Q ss_pred             CcccccCCchhhccCCCCceeCCEEEEEEEEE
Q 047515          168 WGFDQFIPLEAFNDASNGYLVDDTCVFGAEVF  199 (248)
Q Consensus       168 wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~  199 (248)
                      |||.+||++++|+.  .+||+||+++|+|+|.
T Consensus       118 ~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~  147 (147)
T cd03776         118 FGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN  147 (147)
T ss_pred             eeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence            99999999999984  5899999999999983

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.86  E-value=4.8e-21  Score=160.38  Aligned_cols=135  Identities=21%  Similarity=0.273  Sum_probs=105.4

Q ss_pred             cEEEEEEcCccccccc-ccce--EEEcCcE--EEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515           21 ADYIVRIKSYSLLAEE-AIVE--KYESGAF--QARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII   95 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~-~~~~--~~~S~~F--~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~   95 (248)
                      ++|.|+|++||.+++. +.++  .+.|++|  .++||+|+|                            .+|   |    
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i----------------------------~~y---p----   45 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCA----------------------------RAY---L----   45 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEE----------------------------EEE---c----
Confidence            5899999999999754 4455  7999999  999999999                            888   9    


Q ss_pred             cccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeE--EeccCCceeEecCC----CCCC
Q 047515           96 KLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLV--VQDAMGKERRFNGV----KLEW  168 (248)
Q Consensus        96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~--~~~~~~~~~~F~~~----~~~w  168 (248)
                             +|..+ +..+|||+||.++..+.. ...|.+.++++|.|++|.+....+  ........+.|...    +..|
T Consensus        46 -------nG~~~-~~~~~iSv~l~l~~g~~D~~l~wp~~~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~  117 (148)
T cd03780          46 -------NGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIAS  117 (148)
T ss_pred             -------CCCCC-CCCCEEEEEEEEecCccccccCcceEEEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCc
Confidence                   88764 356899999999864322 247999999999999998543321  11100124668654    5679


Q ss_pred             cccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          169 GFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       169 G~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                      |+.+||++++|+..+.+||.||++.|+|.|
T Consensus       118 G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780         118 GCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             ChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            999999999998655799999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.85  E-value=1.9e-20  Score=144.36  Aligned_cols=125  Identities=31%  Similarity=0.428  Sum_probs=99.1

Q ss_pred             cEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccce
Q 047515           21 ADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGE  100 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~  100 (248)
                      .+|+|+|.+|+....    +.++|+.|.++|++|+|                            .+|   |         
T Consensus         1 ~~~~~~i~~~~~~~~----~~~~S~~f~~~g~~W~l----------------------------~~~---p---------   36 (126)
T cd00121           1 GKHTWKIVNFSELEG----ESIYSPPFEVGGYKWRI----------------------------RIY---P---------   36 (126)
T ss_pred             CEEEEEECCCCCCCC----cEEECCCEEEcCEeEEE----------------------------EEE---c---------
Confidence            478999999999322    68999999999999999                            888   8         


Q ss_pred             eecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEec-CCCCCCcccccCCchhh
Q 047515          101 TCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFN-GVKLEWGFDQFIPLEAF  179 (248)
Q Consensus       101 ~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~-~~~~~wG~~~Fi~~~~L  179 (248)
                        +|...  ..+|||+||.|.+.......|.+.|+|+|.|+|+++.......    ..+.|. ....+|||.+|+++++|
T Consensus        37 --~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l  108 (126)
T cd00121          37 --NGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDL  108 (126)
T ss_pred             --CCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEe----ccCCcCCCCCCCCChHHeeEHHHh
Confidence              66542  4679999999987654446799999999999999833332222    334443 55689999999999999


Q ss_pred             ccCCCCceeCCEEEEEEEEE
Q 047515          180 NDASNGYLVDDTCVFGAEVF  199 (248)
Q Consensus       180 ~~~~~gfLvnD~l~i~a~V~  199 (248)
                      ++  .++++||+|+|+|+|.
T Consensus       109 ~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121         109 ED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             cc--CCcEECCEEEEEEEEC
Confidence            95  3349999999999983

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.85  E-value=1.1e-20  Score=157.94  Aligned_cols=133  Identities=24%  Similarity=0.314  Sum_probs=101.9

Q ss_pred             cEEEEEEcCccccccc--c-cceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515           21 ADYIVRIKSYSLLAEE--A-IVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII   95 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~--~-~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~   95 (248)
                      ++|.|+|+|||.+++.  + .++.+.|++|.+|  ||.|+|                            .+|   |    
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i----------------------------~~y---P----   45 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQV----------------------------SAF---L----   45 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEE----------------------------EEE---C----
Confidence            5799999999999874  2 3578999999999  999999                            888   9    


Q ss_pred             cccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCC--ce--eEEec--cCCceeEec------
Q 047515           96 KLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQD--SY--LVVQD--AMGKERRFN------  162 (248)
Q Consensus        96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~--~~--~~~~~--~~~~~~~F~------  162 (248)
                             +|..+ ...+|||+||.++..+... ..|.+.|+++|+|++|.+.  ..  .....  .......|.      
T Consensus        46 -------nG~~~-~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~  117 (154)
T cd03781          46 -------NGNGS-GEGSHLSVYIRVLPGEYDNLLEWPFSHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASR  117 (154)
T ss_pred             -------CCCCC-CCCCEEEEEEEEecCCcccccCCceeeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccc
Confidence                   88754 3568999999998743322 4799999999999999864  11  11000  001133454      


Q ss_pred             --CCCCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          163 --GVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       163 --~~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                        ..+.+|||..||++++|+  +.+||+||+++|+|.|
T Consensus       118 ~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v  153 (154)
T cd03781         118 LDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV  153 (154)
T ss_pred             cCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence              234579999999999998  4789999999999987

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.83  E-value=3.6e-20  Score=155.25  Aligned_cols=135  Identities=21%  Similarity=0.273  Sum_probs=103.4

Q ss_pred             cEEEEEEcCccccccccc-c--eEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccc
Q 047515           21 ADYIVRIKSYSLLAEEAI-V--EKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHII   95 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~~~-~--~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~   95 (248)
                      ++|.|+|+||+.+.+++. +  ..++||+|+..  ||+|+|                            .+|   |    
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i----------------------------~~y---p----   45 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCL----------------------------RLY---L----   45 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEE----------------------------EEE---c----
Confidence            589999999997766654 2  37999999987  999999                            888   9    


Q ss_pred             cccceeecccccCCCCCcEEEEEEecCCC-CCCCCCEEEEEEEEEEEecCCCceeE-EeccCCceeEec----CCCCCCc
Q 047515           96 KLTGETCYINKSKNVKDHISLYLAVADTS-SLTFGWEVYAVFCLFLLYQNQDSYLV-VQDAMGKERRFN----GVKLEWG  169 (248)
Q Consensus        96 ~~~~~~~~G~~~~~~~~~lSlyL~~~~~~-~~~~~W~v~a~f~l~llnq~~~~~~~-~~~~~~~~~~F~----~~~~~wG  169 (248)
                             +|... ..++|+|+||.++..+ .....|.+.++++|.|++|.+..... ........+.|.    ..+..||
T Consensus        46 -------nG~~~-~~~~~iSv~l~l~~g~~D~~l~wpv~~~~tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G  117 (147)
T cd03779          46 -------NGDGA-GKGTHISLFFVIMKGEYDALLPWPFRHKVTFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASG  117 (147)
T ss_pred             -------CCCCC-CCCCEEEEEEEEecCCcccccCcceEEEEEEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcc
Confidence                   88764 3578999999998643 12237999999999999997644311 111000135686    3456799


Q ss_pred             ccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          170 FDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       170 ~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                      +.+||++++|+..+.+||.||+++|+|+|
T Consensus       118 ~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V  146 (147)
T cd03779         118 CPLFFPLKKLQSPKHAYCKDDTIYIKCVV  146 (147)
T ss_pred             hhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence            99999999998544599999999999987

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.83  E-value=2.1e-20  Score=144.96  Aligned_cols=118  Identities=32%  Similarity=0.482  Sum_probs=96.0

Q ss_pred             EcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccceeecccc
Q 047515           27 IKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINK  106 (248)
Q Consensus        27 I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~~~G~~  106 (248)
                      |+|||.+++.  ...+.|+.|.++|++|+|                            .+|   |           +|+ 
T Consensus         1 i~nfs~l~~~--~~~~~s~~~~~~g~~W~l----------------------------~~~---~-----------~~~-   35 (119)
T PF00917_consen    1 IKNFSKLKEG--EEYSSSFVFSHGGYPWRL----------------------------KVY---P-----------KGN-   35 (119)
T ss_dssp             ETTGGGHHTS--EEEEEEEESSTTSEEEEE----------------------------EEE---T-----------TES-
T ss_pred             CcccceEeCC--CcEECCCeEEECCEEEEE----------------------------EEE---e-----------CCC-
Confidence            7899999843  135556999999999999                            888   8           553 


Q ss_pred             cCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCchhhccCCCC
Q 047515          107 SKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNG  185 (248)
Q Consensus       107 ~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g  185 (248)
                          +++||+||.|..++... ..|+|.|++++.|+++.++......    ..+.|+. ..+|||.+|++|++|.++.  
T Consensus        36 ----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~F~~-~~~~g~~~fi~~~~l~~~~--  104 (119)
T PF00917_consen   36 ----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRI----KSHSFNN-PSSWGWSSFISWEDLEDPY--  104 (119)
T ss_dssp             ----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEE----ECEEECT-TSEEEEEEEEEHHHHTTCT--
T ss_pred             ----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeee----eeeEEee-ecccchhheeEHHHhCccC--
Confidence                57999999999875543 5899999999999999988744321    2488975 4889999999999999643  


Q ss_pred             ceeCCEEEEEEEEEE
Q 047515          186 YLVDDTCVFGAEVFV  200 (248)
Q Consensus       186 fLvnD~l~i~a~V~V  200 (248)
                      ||.||+++|+|+|.|
T Consensus       105 fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen  105 FLVDDSLTIEVEVKI  119 (119)
T ss_dssp             TSBTTEEEEEEEEEE
T ss_pred             CeECCEEEEEEEEEC
Confidence            999999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.83  E-value=7.5e-20  Score=158.57  Aligned_cols=137  Identities=17%  Similarity=0.215  Sum_probs=105.0

Q ss_pred             CCCcEEEEEEcCccccccc-ccce--EEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515           18 VPPADYIVRIKSYSLLAEE-AIVE--KYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT   92 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~-~~~~--~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~   92 (248)
                      ...++|.|+|.|||.+++. +.++  .++||+|+++  ||+|+|                            .+|   | 
T Consensus        36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i----------------------------~~y---p-   83 (186)
T cd03777          36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L-   83 (186)
T ss_pred             ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEE----------------------------EEE---c-
Confidence            3479999999999998754 3344  7999999999  999999                            888   9 


Q ss_pred             ccccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEec-CC---C
Q 047515           93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFN-GV---K  165 (248)
Q Consensus        93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~-~~---~  165 (248)
                                +|+.. ..++|||+||.++..+. ....|.+.++++|.|++|.+........  .......|. +.   +
T Consensus        84 ----------nG~g~-~~~~~iSvyl~L~~ge~D~~L~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n  152 (186)
T cd03777          84 ----------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN  152 (186)
T ss_pred             ----------CCCCC-CCCCEEEEEEEEecCCcccccCCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCC
Confidence                      88764 35789999999986432 2237999999999999997522111110  001235576 33   5


Q ss_pred             CCCcccccCCchhhccCCCCceeCCEEEEEEEEE
Q 047515          166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVF  199 (248)
Q Consensus       166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~  199 (248)
                      ..||+..||++++|+  +.+||.||++.|+|.|.
T Consensus       153 ~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         153 IASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             CCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            679999999999998  47899999999999874

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.79  E-value=9.7e-19  Score=149.49  Aligned_cols=132  Identities=17%  Similarity=0.249  Sum_probs=98.5

Q ss_pred             cEEEEEEcCccccc-ccccceEEEcCcE-EEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515           21 ADYIVRIKSYSLLA-EEAIVEKYESGAF-QARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT   98 (248)
Q Consensus        21 ~~~~w~I~~fS~l~-~~~~~~~~~S~~F-~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~   98 (248)
                      .+|+|+|.|||.++ +.+.++.++||+| .+|||+|+|                            .+|   |       
T Consensus         2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I----------------------------~~Y---P-------   43 (167)
T cd03771           2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQV----------------------------GLY---P-------   43 (167)
T ss_pred             CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEE----------------------------EEE---e-------
Confidence            57899999999996 4555679999999 999999999                            888   9       


Q ss_pred             ceeecccccCCCCCcEEEEEEecCCCC-CCCCCE-EEEEEEEEEEecCCC---ceeEE----eccCC-c----eeEec--
Q 047515           99 GETCYINKSKNVKDHISLYLAVADTSS-LTFGWE-VYAVFCLFLLYQNQD---SYLVV----QDAMG-K----ERRFN--  162 (248)
Q Consensus        99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~-v~a~f~l~llnq~~~---~~~~~----~~~~~-~----~~~F~--  162 (248)
                          +|+..  ..+||||||.+.+.+. ....|. +.|+++|+|++|..+   ..+..    .+... .    ...|.  
T Consensus        44 ----nG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP  117 (167)
T cd03771          44 ----NGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRP  117 (167)
T ss_pred             ----CCCCC--CCCcceEEEEEecCCccccccCcceeEEEEEEEECCCCcccccCcceEEEecCCcccccccccccccCC
Confidence                88764  4689999999986433 345799 589999999999731   11111    11000 0    01121  


Q ss_pred             --------C-------CCCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          163 --------G-------VKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       163 --------~-------~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                              .       .+.+|||..||++++|..  .+||.||+|.|++++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~dtl~i~~~~  166 (167)
T cd03771         118 SKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKGDDLIILLDF  166 (167)
T ss_pred             ccccccccccccccccccCccccccceeHHHhcc--CCCCcCCEEEEEEEe
Confidence                    1       235899999999999995  669999999999887

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.79  E-value=6.7e-19  Score=150.13  Aligned_cols=138  Identities=22%  Similarity=0.284  Sum_probs=105.5

Q ss_pred             cCCCcEEEEEEcCccccccccc-c--eEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515           17 HVPPADYIVRIKSYSLLAEEAI-V--EKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN   91 (248)
Q Consensus        17 ~~~~~~~~w~I~~fS~l~~~~~-~--~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P   91 (248)
                      ...+++|+|+|+|||.+.+.+. +  ..++||+|+.+  |++|++                            .+|   |
T Consensus        15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l----------------------------~~y---l   63 (164)
T cd03778          15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L   63 (164)
T ss_pred             cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEE----------------------------EEE---e
Confidence            3458999999999999887653 2  37999999875  899999                            888   8


Q ss_pred             cccccccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEec-cCCceeEe----cCCC
Q 047515           92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQD-AMGKERRF----NGVK  165 (248)
Q Consensus        92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~-~~~~~~~F----~~~~  165 (248)
                                 +|+.. ..+.|||+||.+++.+... ..|.+..+++|.|++|++..+....- .......|    +..+
T Consensus        64 -----------nG~g~-~~g~~LSly~~l~~Ge~D~~L~WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n  131 (164)
T cd03778          64 -----------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMN  131 (164)
T ss_pred             -----------CCCCC-CCCCEEEEEEEEecCCcCcccCCceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccc
Confidence                       88653 3467999999999876554 68999999999999998644332110 00011124    2235


Q ss_pred             CCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                      ..|||..|+++++|..+ .|||+||++.|+|.|
T Consensus       132 ~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V  163 (164)
T cd03778         132 IASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV  163 (164)
T ss_pred             cCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence            67999999999999853 699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>smart00061 MATH meprin and TRAF homology

Probab=99.73  E-value=5.1e-17  Score=121.00  Aligned_cols=94  Identities=29%  Similarity=0.435  Sum_probs=78.7

Q ss_pred             EEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccceee
Q 047515           23 YIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETC  102 (248)
Q Consensus        23 ~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~~  102 (248)
                      ++|.|++|+.+.+.   +.++|++|.++|++|+|                            .+|   |           
T Consensus         2 ~~~~~~~~~~~~~~---~~~~S~~f~~~g~~W~i----------------------------~~~---p-----------   36 (95)
T smart00061        2 LSHTFKNVSRLEEG---ESYFSPSEEHFNIPWRL----------------------------KIY---R-----------   36 (95)
T ss_pred             ceeEEEchhhcccC---ceEeCChhEEcCceeEE----------------------------EEE---E-----------
Confidence            58999999998543   68999999999999999                            888   8           


Q ss_pred             cccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccC
Q 047515          103 YINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFI  174 (248)
Q Consensus       103 ~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi  174 (248)
                      +       .+|||+||.|.+....+..|++.|+|+|.|+||+++.... .    ..+.|.. ..+|||.+||
T Consensus        37 ~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~~~-~----~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       37 K-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSLSK-K----DKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             c-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEEee-e----eeEEEcC-CCccceeeEC
Confidence            3       5799999999876544458999999999999999865522 1    6788986 7889999986

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=3.9e-17  Score=163.66  Aligned_cols=133  Identities=26%  Similarity=0.417  Sum_probs=112.4

Q ss_pred             cCCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccc
Q 047515           17 HVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIK   96 (248)
Q Consensus        17 ~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~   96 (248)
                      +....+|+|+|++||.+.+     +++||+|.+||+.|+|                            .++   |     
T Consensus        35 e~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki----------------------------~lf---P-----   73 (1089)
T COG5077          35 ELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKI----------------------------ILF---P-----   73 (1089)
T ss_pred             HHhhcccceecCChhhhhh-----hccCCcccccCeeEEE----------------------------EEe---c-----
Confidence            3356799999999999985     6999999999999999                            888   9     


Q ss_pred             ccceeecccccCCCCCcEEEEEEecCCCC--CC-CCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCccccc
Q 047515           97 LTGETCYINKSKNVKDHISLYLAVADTSS--LT-FGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQF  173 (248)
Q Consensus        97 ~~~~~~~G~~~~~~~~~lSlyL~~~~~~~--~~-~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~F  173 (248)
                            +|+.   +.+ .|+||+....+.  .+ ..|.|+|||.|.|-|...|+......   ++|+|+....+|||++|
T Consensus        74 ------qG~n---q~~-~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f  140 (1089)
T COG5077          74 ------QGNN---QCN-VSVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNF  140 (1089)
T ss_pred             ------ccCC---ccc-cEEEEEeccchhhhhcCcchhhhhheeeecCCCCCCchhhhhc---ccccccccccccchhhh
Confidence                  8874   223 999999875432  22 35999999999999998877654433   89999999999999999


Q ss_pred             CCchhhccCCCC---ceeCCEEEEEEEEEE-eec
Q 047515          174 IPLEAFNDASNG---YLVDDTCVFGAEVFV-KER  203 (248)
Q Consensus       174 i~~~~L~~~~~g---fLvnD~l~i~a~V~V-k~~  203 (248)
                      +.+..|..|+.|   |+.+|++.|.|+|+| +++
T Consensus       141 ~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077         141 IDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             hhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            999999988776   899999999999999 775

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.52  E-value=5.1e-14  Score=120.48  Aligned_cols=134  Identities=16%  Similarity=0.303  Sum_probs=98.6

Q ss_pred             cEEEEEEcCccccccccc-ceEEEcCcEEEc-ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515           21 ADYIVRIKSYSLLAEEAI-VEKYESGAFQAR-GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT   98 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~~~-~~~~~S~~F~vg-G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~   98 (248)
                      ..++|+|.||+.+.+++. ...++||+|+.. |++.++                            .+|   |       
T Consensus         2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l----------------------------~~~---l-------   43 (167)
T cd03783           2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGV----------------------------SLY---P-------   43 (167)
T ss_pred             CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEE----------------------------EEE---e-------
Confidence            468999999999877653 468999999885 999999                            888   8       


Q ss_pred             ceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEE-EEEEEEEEecCC---CceeE----EeccCCc------eeEecC
Q 047515           99 GETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVY-AVFCLFLLYQNQ---DSYLV----VQDAMGK------ERRFNG  163 (248)
Q Consensus        99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~-a~f~l~llnq~~---~~~~~----~~~~~~~------~~~F~~  163 (248)
                          +|+..+..+.|||||++++..+.. -..|.+. -+++|.|++|+.   ...+.    ..+....      ...|..
T Consensus        44 ----ng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~r  119 (167)
T cd03783          44 ----LSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDR  119 (167)
T ss_pred             ----cCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEEEEcCCcchhhccccceeeecCCCcccccccccccccC
Confidence                776533457899999999976543 3579964 599999999963   11111    1110001      011322


Q ss_pred             --------------CCCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          164 --------------VKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       164 --------------~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                                    .+.++||..|++.+.|..  .+||.||++.|.+++
T Consensus       120 P~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDtlfI~~~~  166 (167)
T cd03783         120 PSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDDLIIFVDF  166 (167)
T ss_pred             CcccccccccccccCCcccccccceeHHHHhh--CCcccCCeEEEEEec
Confidence                          246899999999999994  889999999998875

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.43  E-value=8.5e-13  Score=112.86  Aligned_cols=132  Identities=14%  Similarity=0.257  Sum_probs=98.1

Q ss_pred             cEEEEEEcCcccccccc-cceEEEcCcEEE-cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515           21 ADYIVRIKSYSLLAEEA-IVEKYESGAFQA-RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT   98 (248)
Q Consensus        21 ~~~~w~I~~fS~l~~~~-~~~~~~S~~F~v-gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~   98 (248)
                      .+|+|+|.||+.+.+++ ....++||+|+. .|++.++                            .+|   |       
T Consensus         2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l----------------------------~~y---l-------   43 (167)
T cd03782           2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQV----------------------------GLY---L-------   43 (167)
T ss_pred             CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEE----------------------------EEE---e-------
Confidence            57999999999887763 246899999976 5999999                            888   8       


Q ss_pred             ceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEE-EEEEEEEEecCC---CceeEEe------ccCCc-eeEe--cCC
Q 047515           99 GETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVY-AVFCLFLLYQNQ---DSYLVVQ------DAMGK-ERRF--NGV  164 (248)
Q Consensus        99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~-a~f~l~llnq~~---~~~~~~~------~~~~~-~~~F--~~~  164 (248)
                          +|+..  .+.|||||++++..+.. .-.|.+. -+++|.|++|+.   .+.++..      +.... ...|  ...
T Consensus        44 ----nG~g~--~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP  117 (167)
T cd03782          44 ----NGTDD--YPGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDP  117 (167)
T ss_pred             ----cCCCC--CCCEEEEEEEEeccCCCccccCCCcCCeEEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCC
Confidence                88764  36799999999975533 3579999 899999999963   2222111      00001 1134  211


Q ss_pred             -----------------CCCCcccccCCchhhccCCCCceeCCEEEEEEEE
Q 047515          165 -----------------KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV  198 (248)
Q Consensus       165 -----------------~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V  198 (248)
                                       +.++||+.|++.+.|..  +.||.||++.|-.++
T Consensus       118 ~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD~ifi~~~~  166 (167)
T cd03782         118 RKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGDDVIFLLTM  166 (167)
T ss_pred             cccCcccccccccccccccccCccceeeHHHHhh--cCcccCCeEEEEEec
Confidence                             57899999999999994  789999999987665

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.04  E-value=2.8e-09  Score=96.42  Aligned_cols=162  Identities=28%  Similarity=0.422  Sum_probs=121.4

Q ss_pred             EEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccccccccceee
Q 047515           23 YIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETC  102 (248)
Q Consensus        23 ~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~~~~~  102 (248)
                      ++|.|.+++...     ...+|..|..+|..|++                            .+|   |           
T Consensus         6 ~~~~~~~~~~~~-----l~~ys~~~~~~~~~~~~----------------------------~~~---~-----------   38 (297)
T KOG1987|consen    6 FTWVISNFSSVG-----LVIYSNGFVKGGCKWRL----------------------------SAY---P-----------   38 (297)
T ss_pred             cceeeccCcchh-----hhccccceeecCceEEE----------------------------EEe---c-----------
Confidence            448999999887     36899999999999999                            899   8           


Q ss_pred             cccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCce-eEEeccCCceeEecC--CCCCCcccccCCchhh
Q 047515          103 YINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSY-LVVQDAMGKERRFNG--VKLEWGFDQFIPLEAF  179 (248)
Q Consensus       103 ~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~-~~~~~~~~~~~~F~~--~~~~wG~~~Fi~~~~L  179 (248)
                      .|+       ++|.|+.+....    +|++++.+.|.+.|+....+ ...+.   ....|..  ....||+..+++...+
T Consensus        39 ~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~  104 (297)
T KOG1987|consen   39 KGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLL  104 (297)
T ss_pred             CCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCCcceeeeeee---eEEeccccccccccCcccccChHHh
Confidence            442       799999987643    79999999999999998765 43311   3334433  3679999999999999


Q ss_pred             ccCCCCceeCCEEEEEEEEEE-eeceeeccccccc--------cccCCC----CceeeeecCccccccc----ccCCceE
Q 047515          180 NDASNGYLVDDTCVFGAEVFV-KERNIIKGECLSM--------ANITSS----CKFVWMGENFSKLDER----RQESQVF  242 (248)
Q Consensus       180 ~~~~~gfLvnD~l~i~a~V~V-k~~~~~~~~~~~~--------~~~~~~----~~f~w~~~~fs~l~~~----~~~s~~F  242 (248)
                      .++..||++++.+++-|.+.| +..+  +.+....        +..+..    ..|+|.+.+|+.++..    ...+..|
T Consensus       105 ~~~~~g~~~~~~~~~~a~~~V~~~~~--~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f  182 (297)
T KOG1987|consen  105 IDCSNGFLVAHKLVLVARSEVFEAMG--KSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAF  182 (297)
T ss_pred             hcccCcEEEcCceEEEeeecceeeec--ccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhcc
Confidence            999999999988888888877 5542  3332222        212224    7899999999999753    3444667


Q ss_pred             EcCcc
Q 047515          243 SAGEH  247 (248)
Q Consensus       243 ~~g~~  247 (248)
                      .++++
T Consensus       183 ~~~~~  187 (297)
T KOG1987|consen  183 KYKNR  187 (297)
T ss_pred             ccccH
Confidence            76654

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=8.9e-08  Score=101.90  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=108.1

Q ss_pred             CCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccccc
Q 047515           19 PPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLT   98 (248)
Q Consensus        19 ~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~~~   98 (248)
                      ....++|.+.+...+..     .+.||.|-.++.+|++                            .+.   |       
T Consensus        25 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------------------~~~---~-------   61 (1093)
T KOG1863|consen   25 LNQSTTIDGIDDKSLLY-----RALSSNFGAGATKWKI----------------------------LIA---P-------   61 (1093)
T ss_pred             hcccccccCcCcchhhh-----HhcCccccccccceee----------------------------eec---c-------
Confidence            34556677776666653     6889999999999999                            777   7       


Q ss_pred             ceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCchh
Q 047515           99 GETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEA  178 (248)
Q Consensus        99 ~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~  178 (248)
                          +++    ....+++||.|...... ..|++++++.+.+.|..++......   ..+|.|.....+||+.+|+.+++
T Consensus        62 ----~~~----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~~~~~---~~~h~~~~~~~dwg~~~~~~~~~  129 (1093)
T KOG1863|consen   62 ----KVN----SLQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLPDPEK---AIHHVFTADERDWGFSCFSTSSD  129 (1093)
T ss_pred             ----ccC----cccceeEEeeeccCCCC-cceEecchhhhccccCCCCchhhhh---hhhhcccccccchhhccchhHhh
Confidence                665    24679999999977665 5599999999999994443333322   28899999999999999999999


Q ss_pred             hccCCCCceeCCEEEEEEEEEE-eecee
Q 047515          179 FNDASNGYLVDDTCVFGAEVFV-KERNI  205 (248)
Q Consensus       179 L~~~~~gfLvnD~l~i~a~V~V-k~~~~  205 (248)
                      +.++..||+++|++.++++|.+ .+++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen  130 IRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             ccCcccccccccceeeeeeeeeecCCcc
Confidence            9999999999999999999999 88876

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=90.01  E-value=0.21  Score=48.18  Aligned_cols=82  Identities=24%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             CCcEEEEEEcCccccccccc---ceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515           19 PPADYIVRIKSYSLLAEEAI---VEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH   93 (248)
Q Consensus        19 ~~~~~~w~I~~fS~l~~~~~---~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~   93 (248)
                      -.+.+.|+|.+|+..+.++.   ....+|++|+..  |++-+.                            .+|   -  
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~----------------------------~~~---l--  324 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCA----------------------------RIY---L--  324 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHh----------------------------Hhh---h--
Confidence            36899999999966665543   247899999774  676666                            555   3  


Q ss_pred             cccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEec
Q 047515           94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQ  143 (248)
Q Consensus        94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq  143 (248)
                               +|+.. ..+-++|+|+.+...+.. ...|...-.+++.++.|
T Consensus       325 ---------ng~g~-~~~~~~s~~~~~~~ge~d~~l~wpf~~~v~~~l~dq  365 (391)
T KOG0297|consen  325 ---------NGDGT-GKGTHLSLYFVVMRGEYDALLPWPFRQKVTLMLLDQ  365 (391)
T ss_pred             ---------cCCCC-CCcceeeeeeeecccCcccccccCCCCceEEEEecc
Confidence                     44432 356799999999875543 35799999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	3e-19
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-14
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-09
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	3e-09
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	3e-08
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	7e-08
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	1e-07
1d00_A	168	Tumor necrosis factor receptor associated protein	4e-07

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 80.7 bits (199), Expect = 3e-19
 Identities = 27/198 (13%), Positives = 51/198 (25%), Gaps = 51/198 (25%)

Query: 5   SVYEDAIGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEA 64
              E+ +   TS    A +   ++ +S L+E        S     R   W+         
Sbjct: 3   HTAEEDMEDDTSWRSEATFQFTVERFSRLSE-----SVLSPPCFVRNLPWK--------- 48

Query: 65  KAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTS 124
                                  +                   +  +  +  +L   +  
Sbjct: 49  ----------------------IMVM-----------PRFYPDRPHQKSVGFFL-QCNAE 74

Query: 125 SLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASN 184
           S +  W  +A   L ++    D     +        F   + +WGF  F+      D   
Sbjct: 75  SDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHKENDWGFSNFMAWSEVTDPEK 131

Query: 185 GYLVDDTCVFGAEVFVKE 202
           G++ DD   F   V    
Sbjct: 132 GFIDDDKVTFEVFVQADA 149

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 106 KSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVK 165
             +  KD++SLYL +          EV A F   +L    +    ++             
Sbjct: 55  LDEESKDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMESQR---AYRFVQG 107

Query: 166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV 200
            +WGF +FI  +   D +NG L DD      EV V
Sbjct: 108 KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSV 142

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 105 NKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQD----SYLVVQDAMGKER 159
             ++   ++ISL++            W       L +L Q++     ++  + DA  +  
Sbjct: 52  PTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELL 111

Query: 160 RFNGVKLE-----WGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVK 201
            F    +      +G+  F+ LEA       ++ DDT +   EV  +
Sbjct: 112 AFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTR 156

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 105 NKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGV 164
              +  +  +  +L   +  S +  W  +A   L ++    D     +        F   
Sbjct: 68  YPDRPHQKSVGFFL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRI---SHLFFHK 123

Query: 165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFVKERNIIK 207
           + +WGF  F+      D   G++ DD   F   V     + + 
Sbjct: 124 ENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 166

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 10/105 (9%)

Query: 102 CYIN-KSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGK-- 157
            Y+N        H+SL+  +          W       L L+ Q      +         
Sbjct: 82  VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPN 141

Query: 158 ----ERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
               ++    + +  G   F+        +  Y+ DDT      V
Sbjct: 142 SSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 184

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 50.5 bits (120), Expect = 7e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 10/105 (9%)

Query: 102 CYIN-KSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGK-- 157
            Y+N        H+SL+  +          W       L L+ Q      +         
Sbjct: 118 VYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPN 177

Query: 158 ----ERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
               ++    + +  G   F+        +  Y+ DDT      V
Sbjct: 178 SSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 220

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 103 YIN-KSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQ-----DSYLVVQDAM 155
           Y+N        H+SL+  V    +     W       L LL QN      D++     + 
Sbjct: 86  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 145

Query: 156 GKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
             +R  N + +  G   F P+    +A N Y+ DD     A V
Sbjct: 146 SFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 187

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 103 YIN-KSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQ-----DSYLVVQDAM 155
           Y+N        H+SL+  V    +     W       L LL QN      D++     + 
Sbjct: 62  YLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSS 121

Query: 156 GKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
             +R  N + +  G   F P+    +A N Y+ DD     A V
Sbjct: 122 SFQRPVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	99.96
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	99.96
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.93
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.92
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.92
1d00_A	168	Tumor necrosis factor receptor associated protein	99.91
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.91
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.91
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.91
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.9
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.88
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	98.9
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	86.1
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	83.75
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	83.51
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	80.81

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=99.96  E-value=6.8e-30  Score=209.57  Aligned_cols=141  Identities=18%  Similarity=0.323  Sum_probs=116.2

Q ss_pred             ccccCCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515           14 STSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH   93 (248)
Q Consensus        14 ~~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~   93 (248)
                      ...-.+.++|+|+|+|||.++     +.++|++|.+||++|+|                            .+|   |  
T Consensus        12 ~~~~~~~~~~~w~I~nfS~~~-----~~~~S~~f~~gg~~W~i----------------------------~~y---P--   53 (155)
T 2foj_A           12 DTSWRSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKI----------------------------MVM---P--   53 (155)
T ss_dssp             -CTTCSEEEEEEEESSGGGCC-----SCEECCCEEETTEEEEE----------------------------EEE---E--
T ss_pred             CCCcCCCcEEEEEECChhhcC-----CceEcCCEEECCccEEE----------------------------EEE---E--
Confidence            344567899999999999995     47999999999999999                            888   9  


Q ss_pred             cccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCccccc
Q 047515           94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQF  173 (248)
Q Consensus        94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~F  173 (248)
                               +|+..++..+||||||.|... ..+..|+++|+|+|.|+||+++.....+.   ..++|.....+|||.+|
T Consensus        54 ---------~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~F  120 (155)
T 2foj_A           54 ---------RFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGFSNF  120 (155)
T ss_dssp             ---------EC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCSSCGGGCEEEE---EEEEEETTBCEEEEEEE
T ss_pred             ---------CCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcCCCCcceEEec---cEEEeCCCCCCEeECCe
Confidence                     886431246899999999644 34567999999999999999876433333   67899877789999999


Q ss_pred             CCchhhccCCCCceeCCEEEEEEEEEE-eecee
Q 047515          174 IPLEAFNDASNGYLVDDTCVFGAEVFV-KERNI  205 (248)
Q Consensus       174 i~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~~~  205 (248)
                      |+|++|+++++|||+||+|+|+|+|.| +++|+
T Consensus       121 i~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~  153 (155)
T 2foj_A          121 MAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  153 (155)
T ss_dssp             EEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred             EEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence            999999998999999999999999999 88765

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=99.96  E-value=6.8e-29  Score=201.87  Aligned_cols=138  Identities=27%  Similarity=0.385  Sum_probs=116.3

Q ss_pred             ccccCCCcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEec
Q 047515           14 STSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCY   90 (248)
Q Consensus        14 ~~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~   90 (248)
                      .+.+...++|+|+|+|||.+++ +.++.++||+|.+|||   +|+|                            .+|   
T Consensus         4 ~m~~~~~~~~~w~I~~fs~~~~-~~g~~~~S~~F~~gg~~g~~W~i----------------------------~~y---   51 (145)
T 3ivv_A            4 GSGKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCL----------------------------RVN---   51 (145)
T ss_dssp             -CCCCCEEEEEEEESSGGGCCC-CTTCCEECCCEEESGGGCEEEEE----------------------------EEE---
T ss_pred             CCCcEEEEEEEEEEcCchHHhh-cCCCEEECCCcCCCCcCCceEEE----------------------------EEE---
Confidence            4567788999999999999975 3457899999999996   9999                            888   


Q ss_pred             ccccccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcc
Q 047515           91 NTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGF  170 (248)
Q Consensus        91 P~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~  170 (248)
                      |           +|+.. ...+|||+||.|.+.    ..|+++|+|+|+|+||+++.......  ...++|+. ..+|||
T Consensus        52 P-----------~G~~~-~~~~~lSlyL~l~~~----~~w~v~a~f~l~llnq~~~~~~~~~~--~~~~~F~~-~~~wG~  112 (145)
T 3ivv_A           52 P-----------KGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGF  112 (145)
T ss_dssp             T-----------TCSSG-GGTTEEEEEEEEEEC----SSSEEEEEEEEEEECTTSCEEEEEEC--SSCEEEET-TCEEEE
T ss_pred             c-----------CCCCC-CCCCeEEEEEEEcCC----CCCcEEEEEEEEEEecCCCceeeecc--cceEEecC-CCCcCH
Confidence            9           88753 346899999999864    36999999999999999887654332  25788974 688999


Q ss_pred             cccCCchhhccCCCCceeCCEEEEEEEEEE-ee
Q 047515          171 DQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KE  202 (248)
Q Consensus       171 ~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~  202 (248)
                      .+||++++|+++++|||+||+|+|+|+|.| ++
T Consensus       113 ~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A          113 KKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             EEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             HHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999999888899999999999999999 64

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.93  E-value=1.3e-26  Score=195.63  Aligned_cols=141  Identities=20%  Similarity=0.279  Sum_probs=112.6

Q ss_pred             cCCCcEEEEEEcCccccccc---ccceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515           17 HVPPADYIVRIKSYSLLAEE---AIVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN   91 (248)
Q Consensus        17 ~~~~~~~~w~I~~fS~l~~~---~~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P   91 (248)
                      ....++|+|+|+|||.+++.   +.+..++||+|.+|  ||+|+|                            .+|   |
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i----------------------------~~y---P   68 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCA----------------------------RAY---L   68 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEE----------------------------EEE---T
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEE----------------------------EEE---E
Confidence            45689999999999999863   22338999999999  999999                            888   9


Q ss_pred             cccccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEecC----C
Q 047515           92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFNG----V  164 (248)
Q Consensus        92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~~----~  164 (248)
                                 +|+.. ...+||||||.|.+.+. ....|.+.|+|+|.|+||.++.......  .....+.|+.    .
T Consensus        69 -----------~G~~~-~~~~~lSlyL~l~~~~~d~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~  136 (178)
T 4gjh_A           69 -----------NGDGS-GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEM  136 (178)
T ss_dssp             -----------TCCGG-GTTTEEEEEEEEBCCTTGGGSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSB
T ss_pred             -----------CCCCC-CCCCEEEEEEEEecCCCCcccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccc
Confidence                       88754 34689999999976542 2347999999999999999765443221  0113467763    3


Q ss_pred             CCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       165 ~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      +.+|||.+||++++|+++++|||+||+++|+|+|.|
T Consensus       137 ~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i  172 (178)
T 4gjh_A          137 NIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL  172 (178)
T ss_dssp             CCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred             cCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence            568999999999999988899999999999999987

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.92  E-value=1.4e-25  Score=201.52  Aligned_cols=174  Identities=23%  Similarity=0.314  Sum_probs=127.5

Q ss_pred             CCCcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccc
Q 047515           18 VPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHI   94 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~   94 (248)
                      ...++|+|+|+|||.++ .+.++.+.||+|.+|||   +|+|                            .+|   |   
T Consensus         4 ~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i----------------------------~~y---P---   48 (312)
T 3hqi_A            4 VVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCL----------------------------RVN---P---   48 (312)
T ss_dssp             EEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEE----------------------------EEE---T---
T ss_pred             eEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEE----------------------------EEE---C---
Confidence            34689999999999996 34457999999999996   9999                            888   9   


Q ss_pred             ccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccC
Q 047515           95 IKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFI  174 (248)
Q Consensus        95 ~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi  174 (248)
                              +|+.. +.++|||+||.|.+..    .|.+.|+|+|.|+||+++.....+.  ...++|+. +.+|||.+||
T Consensus        49 --------~G~~~-~~~~~lslyL~~~~~~----~~~v~a~~~~~l~~~~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi  112 (312)
T 3hqi_A           49 --------KGLDE-ESKDYLSLYLLLVSCP----KSEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFI  112 (312)
T ss_dssp             --------TCCC---CTTEEEEEEEEEECC----C-CEEEEEEEEEECTTSCEEEEEEC--SSCEEECT-TCEEEEEEEE
T ss_pred             --------CCCCc-cCCCcEEEEEEEcCCC----CCcEEEEEEEEEEeCCCCccccccc--CCceeCCC-CCCcCHHHhc
Confidence                    88753 3568999999998643    5899999999999999877655442  26788985 4589999999


Q ss_pred             CchhhccCCCCceeCCEEEEEEEEEE-eece-eeccccc-cccccCCCCceeeeecCccccc-ccccCCceEEcCcc
Q 047515          175 PLEAFNDASNGYLVDDTCVFGAEVFV-KERN-IIKGECL-SMANITSSCKFVWMGENFSKLD-ERRQESQVFSAGEH  247 (248)
Q Consensus       175 ~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~~-~~~~~~~-~~~~~~~~~~f~w~~~~fs~l~-~~~~~s~~F~~g~~  247 (248)
                      +|++|+++++|||+||+++|+|+|.| +++. ....+.. .+..|+++     ..++|.+|. .....+.+|.++|+
T Consensus       113 ~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~~-----l~~~l~~l~~~~~~~Dv~l~v~~~  184 (312)
T 3hqi_A          113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECR-----LADELGGLWENSRFTDCCLCVAGQ  184 (312)
T ss_dssp             EHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCCCCCCC-----HHHHHHHHHHTTCSCCEEEEETTE
T ss_pred             cHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccCCCCch-----HHHHHHHHHhCCCCCceEEEECCE
Confidence            99999988899999999999999999 7642 2111111 12234432     235565654 33455557777764

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.92  E-value=3.3e-25  Score=213.20  Aligned_cols=144  Identities=18%  Similarity=0.320  Sum_probs=115.2

Q ss_pred             cccccccCCCcEEEEEEcCcccccccccceEEEcCcEEEcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEec
Q 047515           11 IGRSTSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCY   90 (248)
Q Consensus        11 ~~~~~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~   90 (248)
                      +.......+.++|+|+|+|||.+++     .++|++|.+||++|+|                            .+|   
T Consensus        21 ~~~~~~~~~~~~~~w~I~nfS~~~~-----~~~S~~F~vgg~~W~i----------------------------~~y---   64 (522)
T 2f1z_A           21 MEDDTSWRSEATFQFTVERFSRLSE-----SVLSPPCFVRNLPWKI----------------------------MVM---   64 (522)
T ss_dssp             -----CCCSEEEEEEEESSCTTCCS-----CEECCCEEETTEEEEE----------------------------EEC---
T ss_pred             ccccccccCCcEEEEEECChhhcCC-----ceeCCCEEECCEeeEE----------------------------EEE---
Confidence            3334444678999999999999975     6899999999999999                            777   


Q ss_pred             ccccccccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcc
Q 047515           91 NTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGF  170 (248)
Q Consensus        91 P~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~  170 (248)
                      |           +|+..++.++|||+||.|.+. ..+..|+++|+|+|.|+|++++.....+.   ..++|.....+|||
T Consensus        65 P-----------~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~~~~~~~~~~~---~~~~F~~~~~~wG~  129 (522)
T 2f1z_A           65 P-----------RFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINYRDDEKSFSRR---ISHLFFHKENDWGF  129 (522)
T ss_dssp             B-----------C--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCTTCGGGCEEEE---CCEEECGGGCEEEE
T ss_pred             e-----------CCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcCCCCccceecc---ceeEecCCCCCcch
Confidence            9           886432356899999999876 44668999999999999999876555443   67889877789999


Q ss_pred             cccCCchhhccCCCCceeCCEEEEEEEEEE-eecee
Q 047515          171 DQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KERNI  205 (248)
Q Consensus       171 ~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~~~  205 (248)
                      .+||+|++|.++++|||+||+++|+|+|.| .++++
T Consensus       130 ~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~  165 (522)
T 2f1z_A          130 SNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  165 (522)
T ss_dssp             SSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred             hheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence            999999999988899999999999999999 77654

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.91  E-value=1.3e-25  Score=186.32  Aligned_cols=140  Identities=21%  Similarity=0.253  Sum_probs=108.6

Q ss_pred             cCCCcEEEEEEcCcccccccc-cce--EEEcCcEE--EcceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515           17 HVPPADYIVRIKSYSLLAEEA-IVE--KYESGAFQ--ARGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN   91 (248)
Q Consensus        17 ~~~~~~~~w~I~~fS~l~~~~-~~~--~~~S~~F~--vgG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P   91 (248)
                      ....++|+|+|+|||.+++.. .++  .++||+|.  +||++|+|                            .+|   |
T Consensus        15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i----------------------------~~y---P   63 (168)
T 1d00_A           15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L   63 (168)
T ss_dssp             CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEE----------------------------EEE---T
T ss_pred             cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEE----------------------------EEE---e
Confidence            347899999999999998642 334  39999997  78999999                            888   9


Q ss_pred             cccccccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEec-cCCceeEecC----CC
Q 047515           92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQD-AMGKERRFNG----VK  165 (248)
Q Consensus        92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~-~~~~~~~F~~----~~  165 (248)
                                 +|+.. ..++|||+||.|.+.+... ..|++.|+|+|.|+||.++.+..... .....+.|..    .+
T Consensus        64 -----------~G~~~-~~~~~lSlyL~l~~~~~~~~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~  131 (168)
T 1d00_A           64 -----------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMN  131 (168)
T ss_dssp             -----------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBC
T ss_pred             -----------CCCCC-CCCcEEEEEEEEecCCCCccCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCC
Confidence                       78653 2468999999998755433 57999999999999999865332210 0001235642    35


Q ss_pred             CCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      .+|||.+||++++|+++ +|||+||+++|+|+|.|
T Consensus       132 ~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v  165 (168)
T 1d00_A          132 IASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDL  165 (168)
T ss_dssp             CCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECC
T ss_pred             CCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEe
Confidence            78999999999999964 49999999999999987

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.91  E-value=2.5e-25  Score=189.50  Aligned_cols=139  Identities=20%  Similarity=0.254  Sum_probs=109.1

Q ss_pred             CCCcEEEEEEcCccccccc-ccce--EEEcCcEEE--cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515           18 VPPADYIVRIKSYSLLAEE-AIVE--KYESGAFQA--RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT   92 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~-~~~~--~~~S~~F~v--gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~   92 (248)
                      ...++|+|+|+|||.+++. +.++  .++||+|.+  ||++|+|                            .+|   | 
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i----------------------------~~y---P-   87 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L-   87 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEE----------------------------EEE---T-
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEE----------------------------EEE---e-
Confidence            5789999999999999764 3334  599999999  9999999                            888   9 


Q ss_pred             ccccccceeecccccCCCCCcEEEEEEecCCCCCC-CCCEEEEEEEEEEEecCCCceeEEecc-CCceeEec----CCCC
Q 047515           93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSSLT-FGWEVYAVFCLFLLYQNQDSYLVVQDA-MGKERRFN----GVKL  166 (248)
Q Consensus        93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~-~~W~v~a~f~l~llnq~~~~~~~~~~~-~~~~~~F~----~~~~  166 (248)
                                +|+.. ..++|||+||.+.+.+..+ ..|+++|+|+|.|+||.++.+...... ....+.|.    ..+.
T Consensus        88 ----------~G~~~-~~~~~lSlyL~l~~~~~~~~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~  156 (192)
T 1ca9_A           88 ----------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNI  156 (192)
T ss_dssp             ----------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCC
T ss_pred             ----------CCCCC-CCCCEEEEEEEEccCCCCCcCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCC
Confidence                      88653 2468999999998765433 579999999999999998754321100 00123354    2356


Q ss_pred             CCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          167 EWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       167 ~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      +|||.+||++++|.+ ++|||+||+++|+|+|.|
T Consensus       157 ~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V  189 (192)
T 1ca9_A          157 ASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDL  189 (192)
T ss_dssp             CEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECC
T ss_pred             CcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEe
Confidence            899999999999986 579999999999999987

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.91  E-value=6.7e-25  Score=181.17  Aligned_cols=140  Identities=19%  Similarity=0.232  Sum_probs=105.3

Q ss_pred             CCcEEEEEEcCcccccc-cccce--EEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515           19 PPADYIVRIKSYSLLAE-EAIVE--KYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH   93 (248)
Q Consensus        19 ~~~~~~w~I~~fS~l~~-~~~~~--~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~   93 (248)
                      ..++|+|+|+|||.+++ .+.++  .++||+|.+|  ||+|+|                            .+|   |  
T Consensus         3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i----------------------------~~y---P--   49 (160)
T 1lb6_A            3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM----------------------------RLH---L--   49 (160)
T ss_dssp             CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEE----------------------------EEE---E--
T ss_pred             cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEE----------------------------EEE---e--
Confidence            56899999999999976 34455  8999999999  999999                            888   9  


Q ss_pred             cccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCce--eEEec--cCCceeEecC-----
Q 047515           94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSY--LVVQD--AMGKERRFNG-----  163 (248)
Q Consensus        94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~--~~~~~--~~~~~~~F~~-----  163 (248)
                               +|+...+..+||||||.+++.+.. ..+|.+.|+|+|+|+||.++..  .....  .......|..     
T Consensus        50 ---------~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~  120 (160)
T 1lb6_A           50 ---------QLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPR  120 (160)
T ss_dssp             ---------CCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSB
T ss_pred             ---------cCCCCCCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccC
Confidence                     886532236899999999865432 3469999999999999987531  11110  0001123432     


Q ss_pred             CCCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE-ee
Q 047515          164 VKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KE  202 (248)
Q Consensus       164 ~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~  202 (248)
                      +..+|||.+||++++|+  ++|||+||+++|+|+|.| ++
T Consensus       121 ~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~  158 (160)
T 1lb6_A          121 NPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD  158 (160)
T ss_dssp             CSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred             CCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence            12379999999999998  579999999999999998 65

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.91  E-value=3.3e-25  Score=191.26  Aligned_cols=142  Identities=15%  Similarity=0.167  Sum_probs=111.6

Q ss_pred             cCCCcEEEEEEcCccccccc---ccceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecc
Q 047515           17 HVPPADYIVRIKSYSLLAEE---AIVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYN   91 (248)
Q Consensus        17 ~~~~~~~~w~I~~fS~l~~~---~~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P   91 (248)
                      ....++|+|+|+|||.+++.   +.++.++||+|.+|  |++|+|                            .+|   |
T Consensus        36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i----------------------------~~y---P   84 (198)
T 4ghu_A           36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L   84 (198)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEE----------------------------EEE---T
T ss_pred             cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEE----------------------------EEE---e
Confidence            34679999999999999873   34578999999999  999999                            888   9


Q ss_pred             cccccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeEEecc------CCceeEecCC
Q 047515           92 THIIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLVVQDA------MGKERRFNGV  164 (248)
Q Consensus        92 ~~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~~~~~------~~~~~~F~~~  164 (248)
                                 +|+.. ..++||||||.+++.+.. ...|.+.|+|+|.|+||.+.........      ....+.|+..
T Consensus        85 -----------nG~~~-~~~~~lSlyL~l~~g~~D~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~  152 (198)
T 4ghu_A           85 -----------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEM  152 (198)
T ss_dssp             -----------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSB
T ss_pred             -----------CCCCC-CCCCeEEEEEEecCCccCCCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccC
Confidence                       88754 346899999999865432 3479999999999999987654433210      0012334445


Q ss_pred             CCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE-eec
Q 047515          165 KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV-KER  203 (248)
Q Consensus       165 ~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V-k~~  203 (248)
                      +.+|||.+||++++|++  +|||+||+++|+|+|.| ..+
T Consensus       153 ~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~  190 (198)
T 4ghu_A          153 NIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP  190 (198)
T ss_dssp             CCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC
T ss_pred             cCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCC
Confidence            67899999999999984  89999999999999998 554

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.90  E-value=1.5e-24  Score=185.41  Aligned_cols=137  Identities=17%  Similarity=0.211  Sum_probs=108.5

Q ss_pred             CCcEEEEEEcCccccccc-ccce--EEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515           19 PPADYIVRIKSYSLLAEE-AIVE--KYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH   93 (248)
Q Consensus        19 ~~~~~~w~I~~fS~l~~~-~~~~--~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~   93 (248)
                      ..++|+|+|+|||.+++. +.++  .++||+|.+|  ||+|+|                            .+|   |  
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i----------------------------~~y---P--   84 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L--   84 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEE----------------------------EEE---T--
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEE----------------------------EEE---e--
Confidence            689999999999999753 3344  5999999999  999999                            888   9  


Q ss_pred             cccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEecCC----CC
Q 047515           94 IIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFNGV----KL  166 (248)
Q Consensus        94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~~~----~~  166 (248)
                               +|+.. ..++|||+||.+++.+.. ...|++.|+|+|+|+||.++.......  .....+.|...    +.
T Consensus        85 ---------nG~~~-~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~  154 (192)
T 2gkw_A           85 ---------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNI  154 (192)
T ss_dssp             ---------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCC
T ss_pred             ---------CCCCC-CCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcC
Confidence                     88754 346899999999865432 347999999999999999875443221  00122557532    46


Q ss_pred             CCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          167 EWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       167 ~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      +|||.+||++++|.+  +|||+||+++|+|+|.|
T Consensus       155 ~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v  186 (192)
T 2gkw_A          155 ASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  186 (192)
T ss_dssp             CEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECC
T ss_pred             CCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEc
Confidence            899999999999986  59999999999999987

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.88  E-value=1.5e-23  Score=184.04  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             CCCcEEEEEEcCccccccc-ccc--eEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515           18 VPPADYIVRIKSYSLLAEE-AIV--EKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT   92 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~-~~~--~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~   92 (248)
                      ...++|+|+|+|||.+++. +.+  ..++||+|.+|  ||+|+|                            .+|   | 
T Consensus        73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i----------------------------~~y---P-  120 (228)
T 1flk_A           73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L-  120 (228)
T ss_dssp             CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECE----------------------------EEE---T-
T ss_pred             CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEE----------------------------EEE---c-
Confidence            4789999999999999753 222  37999999999  999999                            888   9 


Q ss_pred             ccccccceeecccccCCCCCcEEEEEEecCCCCC-CCCCEEEEEEEEEEEecCCCceeEEec--cCCceeEec----CCC
Q 047515           93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQDSYLVVQD--AMGKERRFN----GVK  165 (248)
Q Consensus        93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~-~~~W~v~a~f~l~llnq~~~~~~~~~~--~~~~~~~F~----~~~  165 (248)
                                +|+.. ..++|||+||.+++.+.. ...|++.|+|+|+|+||.++.......  .....+.|.    ..+
T Consensus       121 ----------nG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~  189 (228)
T 1flk_A          121 ----------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMN  189 (228)
T ss_dssp             ----------TCCGG-GTTTEEEEEECCBCCTTTTSSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBC
T ss_pred             ----------CCCCC-CCCCEEEEEEEEecCCccccCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCC
Confidence                      88754 356899999999865433 347999999999999999876433221  001233464    234


Q ss_pred             CCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          166 LEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       166 ~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      .+|||.+||++++|++  +|||+||+++|+|+|.|
T Consensus       190 ~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v  222 (228)
T 1flk_A          190 IASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT  222 (228)
T ss_dssp             CCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred             CCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence            6899999999999985  79999999999999988

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=98.90  E-value=3.2e-09  Score=105.03  Aligned_cols=135  Identities=19%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             cccCCCcEEEEEEcCcccccccccceEEEcCcEEE-cceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEecccc
Q 047515           15 TSHVPPADYIVRIKSYSLLAEEAIVEKYESGAFQA-RGHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTH   93 (248)
Q Consensus        15 ~~~~~~~~~~w~I~~fS~l~~~~~~~~~~S~~F~v-gG~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~   93 (248)
                      +.+.+.....|+|.||+.+...+. ..++||+|+- .||+++|                            .+|   |  
T Consensus       400 ~t~G~CP~~vw~i~nfs~~l~~~~-~~~~Sp~Fys~~GY~~~v----------------------------~l~---~--  445 (592)
T 4gwm_A          400 LSETRCPHHIWHIRNFTQFIGSPN-GTLYSPPFYSSKGYAFQI----------------------------YLN---L--  445 (592)
T ss_dssp             EESSCCCSEEEEECSCGGGTTCTT-CEEECCCEECTTSCEEEE----------------------------EEE---C--
T ss_pred             EeeCCCCCCceeecCHHHhhcCCC-CceeCCCccCCCCeEEEE----------------------------EEe---c--
Confidence            344567789999999999986543 6899999976 5999999                            888   6  


Q ss_pred             cccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEE-EEEEEEEEecCCCceeEEe-------cc-C--------
Q 047515           94 IIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVY-AVFCLFLLYQNQDSYLVVQ-------DA-M--------  155 (248)
Q Consensus        94 ~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~-a~f~l~llnq~~~~~~~~~-------~~-~--------  155 (248)
                               .      ...|+|+|+++...+. ....|.+. -+++|.|++|+.+....+.       +. +        
T Consensus       446 ---------~------~~~~~~~~~~l~sG~~D~~L~WP~~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~  510 (592)
T 4gwm_A          446 ---------A------HVTNAGIYFHLISGANDDQLQWPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYF  510 (592)
T ss_dssp             ---------C------SSSEEEEEEEEECCTTGGGSCSSCCSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBT
T ss_pred             ---------C------CCceEEEEEEEecCCCCCCccCCCCCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccc
Confidence                     2      2468999999986432 34579995 6899999999744322111       00 0        


Q ss_pred             -------CceeEecCC-----CCCCcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          156 -------GKERRFNGV-----KLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       156 -------~~~~~F~~~-----~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                             +....|...     +.+|||+.||+.+.|.  +..||.||++.|.+.|.=
T Consensus       511 w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD  565 (592)
T 4gwm_A          511 WDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRDFIKGDDVYILLTVED  565 (592)
T ss_dssp             TSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEE
T ss_pred             cCCcccccccccccCCcceeecCCcCccccccHHHHh--hcCcccCCeEEEEEEEEe
Confidence                   001112111     2468999999999998  467999999999977743

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=86.10  E-value=0.21  Score=42.18  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             CCCCceeeeecCcccccc-------cccCCceEEcC--ccC
Q 047515          217 TSSCKFVWMGENFSKLDE-------RRQESQVFSAG--EHK  248 (248)
Q Consensus       217 ~~~~~f~w~~~~fs~l~~-------~~~~s~~F~~g--~~k  248 (248)
                      +.+..|+|+|+|||.+.+       ....|+.|.+|  |++
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~   77 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK   77 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCE
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcE
Confidence            346899999999999975       46889999999  864

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=83.75  E-value=0.24  Score=41.32  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=25.4

Q ss_pred             CCCceeeeecCccccccc-------ccCCceEEcC--ccC
Q 047515          218 SSCKFVWMGENFSKLDER-------RQESQVFSAG--EHK  248 (248)
Q Consensus       218 ~~~~f~w~~~~fs~l~~~-------~~~s~~F~~g--~~k  248 (248)
                      .+.+|+|+|+|||.+.+.       ...|+.|.+|  |+|
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gyk   77 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK   77 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCE
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcE
Confidence            468899999999999642       4789999999  764

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=83.51  E-value=0.24  Score=41.05  Aligned_cols=32  Identities=22%  Similarity=0.275  Sum_probs=26.4

Q ss_pred             CCCCceeeeecCccccccc-------ccCCceEEc--CccC
Q 047515          217 TSSCKFVWMGENFSKLDER-------RQESQVFSA--GEHK  248 (248)
Q Consensus       217 ~~~~~f~w~~~~fs~l~~~-------~~~s~~F~~--g~~k  248 (248)
                      +.+..|+|+|+|||.+.+.       ...|+.|.+  ||++
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~   80 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYK   80 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCE
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeE
Confidence            3478899999999999753       488999999  8864

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=80.81  E-value=0.37  Score=41.41  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=25.8

Q ss_pred             CCCceeeeecCcccccc-------cccCCceEEcC--ccC
Q 047515          218 SSCKFVWMGENFSKLDE-------RRQESQVFSAG--EHK  248 (248)
Q Consensus       218 ~~~~f~w~~~~fs~l~~-------~~~~s~~F~~g--~~k  248 (248)
                      .+..|+|+|+|||.+.+       ....|+.|.+|  |++
T Consensus        74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~  113 (228)
T 1flk_A           74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYK  113 (228)
T ss_dssp             SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCE
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcE
Confidence            47889999999999964       26889999999  764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	2e-10
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	1e-08
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	2e-08
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	3e-08

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 75  RGRNKEEEDSSLFVCYNTHIIKLTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYA 134
           R    E   SS F       +K           +  KD++SLYL +          EV A
Sbjct: 18  REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRA 73

Query: 135 VFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVF 194
            F   +L    +    ++              +WGF +FI  +   D +NG L DD    
Sbjct: 74  KFKFSILNAKGEETKAMESQR---AYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTL 130

Query: 195 GAEVFVKERNI 205
             EV V + ++
Sbjct: 131 FCEVSVVQDSV 141

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 106 KSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQ-----DSYLVVQDAMGKER 159
                  H+SL+  V    +     W       L LL QN      D++     +   +R
Sbjct: 50  DGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQR 109

Query: 160 RFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
             N + +  G   F P+    +A N Y+ DD     A V
Sbjct: 110 PVNDMNIASGCPLFCPVSKM-EAKNSYVRDDAIFIKAIV 147

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 9/100 (9%)

Query: 106 KSKNVKDHISLYLAVAD-TSSLTFGWEVYAVFCLFLLYQNQDSYLVV------QDAMGKE 158
                  H+SL+  +          W       L L+ Q      +        ++   +
Sbjct: 50  DGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFK 109

Query: 159 RRFNGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
           +    + +  G   F+        +  Y+ DDT      V
Sbjct: 110 KPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIV 147

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 102 CYINKSKNVKDHISLYLAVADTSSL-TFGWEVYAVFCLFLLYQNQD----SYLVVQDAMG 156
             +  ++   ++ISL++            W       L +L Q++     ++  + DA  
Sbjct: 49  LQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKP 108

Query: 157 KERRF-----NGVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEV 198
           +   F           +G+  F+ LEA       ++ DDT +   EV
Sbjct: 109 ELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEV 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.92
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.92
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.91
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.91

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=179.87  Aligned_cols=133  Identities=26%  Similarity=0.346  Sum_probs=111.1

Q ss_pred             CcEEEEEEcCcccccccccceEEEcCcEEEcce---EEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccccc
Q 047515           20 PADYIVRIKSYSLLAEEAIVEKYESGAFQARGH---KWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHIIK   96 (248)
Q Consensus        20 ~~~~~w~I~~fS~l~~~~~~~~~~S~~F~vgG~---~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~~~   96 (248)
                      ..+|+|+|+|||.+++. .++.++||.|.++|+   +|+|                            .+|   |     
T Consensus         4 ~~~~~W~I~nfs~~~~~-~~~~~~Sp~F~~~~~~~~~W~l----------------------------~ly---p-----   46 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCL----------------------------RVN---P-----   46 (146)
T ss_dssp             EEEEEEEEETGGGCCCC-SSCCEECCCBCSSSCCSCCBEE----------------------------EEC---T-----
T ss_pred             EEEEEEEECCchHHhhc-CCCEEECCCEEeCCcCCeEEEE----------------------------EEE---E-----
Confidence            46799999999998764 347899999999885   8999                            788   9     


Q ss_pred             ccceeecccccCCCCCcEEEEEEecCCCCCCCCCEEEEEEEEEEEecCCCceeEEeccCCceeEecCCCCCCcccccCCc
Q 047515           97 LTGETCYINKSKNVKDHISLYLAVADTSSLTFGWEVYAVFCLFLLYQNQDSYLVVQDAMGKERRFNGVKLEWGFDQFIPL  176 (248)
Q Consensus        97 ~~~~~~~G~~~~~~~~~lSlyL~~~~~~~~~~~W~v~a~f~l~llnq~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~  176 (248)
                            +|+.. ..++||||||.+.+.    ..|++.++|+|.|+||+++.......   ..+.+...+.+|||.+||++
T Consensus        47 ------~G~~~-~~~~~lSv~L~~~~~----~~~~v~~~~~~~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~  112 (146)
T d2cr2a1          47 ------KGLDE-ESKDYLSLYLLLVSC----PKSEVRAKFKFSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRR  112 (146)
T ss_dssp             ------TCSSS-SSSSBCCEEEECCCC----SSSEEEEECEEEEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBH
T ss_pred             ------CCCCC-CCCCEEEEEEEeccC----CCceEEEEEEEEEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEH
Confidence                  78754 456899999999764    35999999999999999876665543   44445455688999999999


Q ss_pred             hhhccCCCCceeCCEEEEEEEEEE-eec
Q 047515          177 EAFNDASNGYLVDDTCVFGAEVFV-KER  203 (248)
Q Consensus       177 ~~L~~~~~gfLvnD~l~i~a~V~V-k~~  203 (248)
                      ++|.++.+|||+||+|+|+|+|.| ++.
T Consensus       113 ~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1         113 DFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             HHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             HHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            999999999999999999999999 665

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-26  Score=184.63  Aligned_cols=137  Identities=23%  Similarity=0.298  Sum_probs=107.7

Q ss_pred             CcEEEEEEcCcccccccc---cceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccc
Q 047515           20 PADYIVRIKSYSLLAEEA---IVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHI   94 (248)
Q Consensus        20 ~~~~~w~I~~fS~l~~~~---~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~   94 (248)
                      +++|+|+|+|||.+++.+   .+..++||+|.++  |++|+|                            .+|   |   
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w~l----------------------------~~y---P---   47 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCL----------------------------RIY---L---   47 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEEEE----------------------------EEE---T---
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEEEE----------------------------EEE---e---
Confidence            589999999999997653   2357999999999  999999                            888   9   


Q ss_pred             ccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEeccC-----CceeEecCCCCCC
Q 047515           95 IKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQDAM-----GKERRFNGVKLEW  168 (248)
Q Consensus        95 ~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~~~-----~~~~~F~~~~~~w  168 (248)
                              +|+.. ..++|+||||++.+... .+..|.+.++|+|.|+||.++.........     ...+.+...+.+|
T Consensus        48 --------~G~~~-~~~~~lSlyL~l~~~~~d~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  118 (152)
T d1czya1          48 --------NGDGT-GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIAS  118 (152)
T ss_dssp             --------TCCGG-GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCE
T ss_pred             --------CCCCC-CCCCEEEEEEEEccCCcCcccccceeeEEEEEEEcCCCCccceeeeccccccccccCCCccccccc
Confidence                    88754 35689999999986543 245799999999999999887654432110     0122234446789


Q ss_pred             cccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          169 GFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       169 G~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      ||.+||++++|. +++|||+||+|+|+|+|.|
T Consensus       119 G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v  149 (152)
T d1czya1         119 GCPLFCPVSKME-AKNSYVRDDAIFIKAIVDL  149 (152)
T ss_dssp             EEEEEEETCCCC-CSTTTSCSSCEEEEEEECC
T ss_pred             chhhEEEHHHhc-ccCCcEeCCEEEEEEEEEe
Confidence            999999999985 5689999999999999965

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.9e-25  Score=178.44  Aligned_cols=136  Identities=17%  Similarity=0.202  Sum_probs=108.2

Q ss_pred             CcEEEEEEcCcccccccc---cceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccccc
Q 047515           20 PADYIVRIKSYSLLAEEA---IVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNTHI   94 (248)
Q Consensus        20 ~~~~~w~I~~fS~l~~~~---~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~~~   94 (248)
                      +++|+|+|+|||.+.+.+   .+..++||+|.++  |++|+|                            .+|   |   
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w~l----------------------------~~y---p---   47 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCA----------------------------RVY---L---   47 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEEEE----------------------------EEE---T---
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEEEE----------------------------EEE---e---
Confidence            689999999999997653   2358999999999  999999                            888   9   


Q ss_pred             ccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEecc------CCceeEecCCCCC
Q 047515           95 IKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQDA------MGKERRFNGVKLE  167 (248)
Q Consensus        95 ~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~~------~~~~~~F~~~~~~  167 (248)
                              +|+.. ..++||||||.+.+.+. ....|.+.|+|+|.|+||.++........      ....+.+...+.+
T Consensus        48 --------~G~~~-~~~~~lSlyL~l~~~~~d~~~~~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  118 (155)
T d1l0aa1          48 --------NGDGM-GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIA  118 (155)
T ss_dssp             --------TCCGG-GTTTEEEEEEEEECCTTTTTSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCC
T ss_pred             --------CCCCC-CCCCEEEEEEEEccCCcCcccCCcEEEEEEEEEecCCCCccceeEEEeeccccccccccccccccC
Confidence                    88754 35689999999986543 34579999999999999988765443211      0123444455678


Q ss_pred             CcccccCCchhhccCCCCceeCCEEEEEEEEEE
Q 047515          168 WGFDQFIPLEAFNDASNGYLVDDTCVFGAEVFV  200 (248)
Q Consensus       168 wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~V  200 (248)
                      |||.+||++++|+  ++|||+||+|+|+|+|.+
T Consensus       119 ~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~  149 (155)
T d1l0aa1         119 SGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDT  149 (155)
T ss_dssp             EEEEEEEEHHHHH--TTTTCBTTEEEEEEEECC
T ss_pred             cChhheeEHHHhh--hCCCEECCEEEEEEEEEe
Confidence            9999999999998  479999999999999855

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5e-25  Score=177.20  Aligned_cols=138  Identities=19%  Similarity=0.231  Sum_probs=107.6

Q ss_pred             CCCcEEEEEEcCcccccccc---cceEEEcCcEEEc--ceEEEeCceehhhhhhccccccCCCCCCccCCCceEEEeccc
Q 047515           18 VPPADYIVRIKSYSLLAEEA---IVEKYESGAFQAR--GHKWRQGGIQFIEAKAGKKFKNSNRGRNKEEEDSSLFVCYNT   92 (248)
Q Consensus        18 ~~~~~~~w~I~~fS~l~~~~---~~~~~~S~~F~vg--G~~Wri~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~c~P~   92 (248)
                      ..+++|+|+|+|||.+++.+   .+..++||+|.+|  |++|||                            .+|   | 
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~wrl----------------------------~~y---p-   49 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCM----------------------------RLH---L-   49 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEE----------------------------EEE---E-
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEEEE----------------------------EEE---e-
Confidence            45799999999999997653   2468999999999  999999                            888   9 


Q ss_pred             ccccccceeecccccCCCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEEEecCCCceeEEec----cCC-----ceeEec
Q 047515           93 HIIKLTGETCYINKSKNVKDHISLYLAVADTSS-LTFGWEVYAVFCLFLLYQNQDSYLVVQD----AMG-----KERRFN  162 (248)
Q Consensus        93 ~~~~~~~~~~~G~~~~~~~~~lSlyL~~~~~~~-~~~~W~v~a~f~l~llnq~~~~~~~~~~----~~~-----~~~~F~  162 (248)
                                +|+..+...+|||+||.+.+... ....|.+.++++|.|++|++........    ...     ..++|.
T Consensus        50 ----------~g~~~~~~~~~lsvyL~l~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (155)
T d1lb6a_          50 ----------QLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIP  119 (155)
T ss_dssp             ----------CCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSS
T ss_pred             ----------CCCCCCCCCCEEEEEEEEecCcccccCCCcEEEEEEEEEECCCCCccceeeEEeeecCCccccccCCccc
Confidence                      77654445689999999986543 3457999999999999998765432110    000     112344


Q ss_pred             CCCCCCcccccCCchhhccCCCCceeCCEEEEEEEEE
Q 047515          163 GVKLEWGFDQFIPLEAFNDASNGYLVDDTCVFGAEVF  199 (248)
Q Consensus       163 ~~~~~wG~~~Fi~~~~L~~~~~gfLvnD~l~i~a~V~  199 (248)
                      ..+.+|||.+||++++|+  ++|||+||+|+|+|+|.
T Consensus       120 ~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_         120 RNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             BCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             CCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence            456789999999999998  47999999999999996