Citrus Sinensis ID: 047519

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890--
Protein Sequence
CSAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLFELS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHHccccccEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccEEccccccccccccccEEEcccccccccccHHHHHHHHHcccccccccEEEcccccccccEEEEEEEEEcccEEEEHHccccEEEEEcccccccccccHHHHcHHHHHHHHHcccccccccccccHHccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEHHHHHHHHHccccHHHHHHHHccccEEEEEEEEEEEEEHHHHHHHHcccccccHHHHccccHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEcccccccEccccccHHHccHHccEEEccccccccccccHHHccccccEEEEcccccccccccHHHHHccHcHHcEcccccccccccccccHHHHccccccEcccccccccccccccccccHHHHHHHHHHccccccHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccccccHHcccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHHHccccccEEEEcccccccccccccccccccEEEccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHEEEEEHHHHcHHHHHHHHccccccEEEEEEccccccEEEEEEEcc
Coil and Loop (DISEMBL)
csaklcshdQSSALLQFKQLfsfeqhsssdcdevyqqsrpkmmswkedadccswdgvtcdtvagHVIGLDLScswlhgnipsnsslfflphirklnlafndfnyseissgFSQLRSLTLLnlsssnfmgsipasiDLINvsrlstnylpifafsdcfqldvkttflhddLEEEIYMTQLdgfkvaekeNWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEicrnrtcgktmdvgllfeqddtlgqsvngyvdsdyigdldkrrsitgyvfnfaggpinwkstLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRgrrhyaephfssnqlsgsipssVYELENLILlrlpsnrlsgttelydfaklknlkwlfvsnnrlslstklkvnssfpnlfglglsacnisefPDILRTLHQLQWFNlsknrihgriSSWMWDLGITALYYLDLsnnfltnieyfpptnmtqlnfdsnlTHKVLDMRmnnfngkiSQKFVNscnltnlnlngnrlegplplslvnchhlevldvgnnqindnfpnwLEILPELQVLILRsnrfwgpigdnttivpfprfriidlshneftgvlptgyldnfkammhgnnnsvevdymtplnssnyYESIILTIKGIDIQIERILTIFMTIdlssnkfqggipeVVGKLNLlkglnnishnnltgdiPSLLRNltevesldlssnmlvghiptqltsLKYLSVLNLSynqfegpipqgsqfntfrndsyvgnsglcgfpllescnideapepvgstrfgeeenasswfdWKFAKMGYGSGLVIGLSIGYivfgtgkprwlEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAfsydacdfcrislfels
Flexible Loop (DISEMBL)
csaklcshdqsSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNfaggpinwkstLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAephfssnqlsgsiPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFtafsydacdFCRISLFELS
Low Complexity Region (SEG)
CSAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFsqlrsltllnlsssNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKstlqstvvlsttEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVnscnltnlnlngnrlegplplSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVgklnllkglnnISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLFELS
Disordered region (IsUnstruct)
****************F**LF**********************SWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEI**********************DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFS*****GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNID****************ASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLF***
Disordered Region (DISOPRED)
***KLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM************MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL***************************FDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLFEL*
Disordered Region (DISEMBL)
*********QSSALLQFKQLFSFE*************SRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLFELS
Disordered Region (DISPRO)
***KLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESC*********************SWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLFELS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CSAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDxxxxxxxxxxxxxxxxxxxxxxxxKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQIITLQACCDLGVLKKLKLATSRKIFTAFSYDACDFCRISLFELS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	892	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.785	0.827	0.290	1e-74
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.679	0.484	0.272	4e-38
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.680	0.485	0.263	8e-34
O49318	1124	Probable leucine-rich rep	no	no	0.737	0.585	0.263	2e-33
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.468	0.573	0.318	3e-33
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.443	0.387	0.300	4e-33
Q9FL28	1173	LRR receptor-like serine/	no	no	0.752	0.572	0.251	2e-32
Q9LRT1	1016	Probably inactive leucine	no	no	0.515	0.452	0.308	3e-32
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.436	0.375	0.294	4e-32
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.474	0.386	0.306	8e-32

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  281 bits (720), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 264/910 (29%), Positives = 394/910 (43%), Gaps = 209/910 (22%)

Query: 2   SAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDT 61
           S   C  DQ  ALL+F+  F      ++    + Q   P    W +  DCC W+GVTC+ 
Sbjct: 30  SPHFCRDDQRDALLEFRGEFPI----NASWHIMNQWRGP----WNKSTDCCLWNGVTCND 81

Query: 62  VAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLN 121
            +G VI LD+  ++L+  + +NSSLF L ++R                          L+
Sbjct: 82  KSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRH-------------------------LD 116

Query: 122 LSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDG 181
           L++ N  G IP+S+   N+S L+                             +Y  +  G
Sbjct: 117 LTNCNLYGEIPSSLG--NLSHLTL--------------------------VNLYFNKFVG 148

Query: 182 FKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGM 241
              A   N L +   + L  +V   EI S                     LG   +++ +
Sbjct: 149 EIPASIGN-LNQLRHLILANNVLTGEIPSS--------------------LGNLSRLVNL 187

Query: 242 EICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINW 301
           E+  NR  GK                        D IGDL + R+++    N  G   + 
Sbjct: 188 ELFSNRLVGKI----------------------PDSIGDLKQLRNLSLASNNLIGEIPSS 225

Query: 302 KSTLQSTVVLSTTEAEYMA-ITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVY 360
              L + V L  T  + +  +  ++   I L+V            F +N LSG+IP S  
Sbjct: 226 LGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVM----------SFENNSLSGNIPISFA 275

Query: 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-------------------- 400
            L  L +  L SN  + T   +D +   NL++  VS N                      
Sbjct: 276 NLTKLSIFVLSSNNFTSTFP-FDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQ 334

Query: 401 -------------SLSTKL--------KVNSSFP-------NLFGLGLSACNIS-EFPDI 431
                        S STKL        +++   P       NL  L +S  N +   P  
Sbjct: 335 ENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT 394

Query: 432 LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY------------------LDL-SNN 472
           +  L  L   +LSKN + G + + +W L    L +                  LDL SN+
Sbjct: 395 ISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNS 454

Query: 473 FLTNIEYF--PPTNMTQLNFDSNL--------------THKVLDMRMNNFNGKISQKFVN 516
           F   I Y     +++  L+  +NL              + K L++  NNF+G +   F  
Sbjct: 455 FQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSK 514

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
           +  L +L+++ N+LEG  P SL+NC  LE+++V +N+I D FP+WLE LP L VL LRSN
Sbjct: 515 ATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSN 574

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVD-YMTPL 635
           +F+GP+      + F   RIID+SHN F+G LP  Y  N+K M      + E+D YMT  
Sbjct: 575 KFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMT---TLTEEMDQYMTEF 631

Query: 636 --NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
              + +YY  + +  KG+D+  ERI   F  ID S NK  G IPE +G L  L+ L N+S
Sbjct: 632 WRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVL-NLS 690

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
            N  T  IP  L NLT++E+LD+S N L G IP  L +L +LS +N S+N  +GP+P+G+
Sbjct: 691 GNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGT 750

Query: 754 QFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGS 813
           QF   +  S++ N GL G  L + C    A  P         E   + F+W  A + YG 
Sbjct: 751 QFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGP 808

Query: 814 GLVIGLSIGY 823
           G++ GL IG+
Sbjct: 809 GVLCGLVIGH 818

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  160 bits (405), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 194/713 (27%), Positives = 308/713 (43%), Gaps = 107/713 (15%)

Query: 98  AFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASI-DLINVSRLS------TNYLP- 149
           AFN  N S + +  ++L++L  LNL  ++F G IP+ + DL+++  L+         +P 
Sbjct: 224 AFNRLNGS-LPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPK 282

Query: 150 -IFAFSDCFQLDVKTTFLHDDLEEEIY-MTQLDGFKVAEKENWLQEESFIYLLLHVDDME 207
            +   ++   LD+ +  L   + EE + M QL+   +A+              L     +
Sbjct: 283 RLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNR------------LSGSLPK 330

Query: 208 IASKSKDEIEKL---KTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDT 264
               +   +++L   +TQL+ E    ++   + +  +++  N   G+  D      +   
Sbjct: 331 TICSNNTSLKQLFLSETQLSGEIP-AEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTN 389

Query: 265 L---GQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAI 321
           L     S+ G + S  I +L   +  T Y  N  G         +    L   E  Y+  
Sbjct: 390 LYLNNNSLEGTLSSS-ISNLTNLQEFTLYHNNLEG------KVPKEIGFLGKLEIMYLYE 442

Query: 322 TKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL 381
            +   E   + V +       E  +  N+LSG IPSS+  L++L  L L  N L G    
Sbjct: 443 NRFSGE---MPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP- 498

Query: 382 YDFAKLKNLKWLFV---SNNRLSLSTKLKVNSSFPNLFGLGLSACNI---------SEFP 429
              A L N   + V   ++N+LS         S P+ FG  L+A  +            P
Sbjct: 499 ---ASLGNCHQMTVIDLADNQLS--------GSIPSSFGF-LTALELFMIYNNSLQGNLP 546

Query: 430 DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTN---IEYFPPTNMT 486
           D L  L  L   N S N+ +G IS      G ++    D++ N       +E    TN+ 
Sbjct: 547 DSLINLKNLTRINFSSNKFNGSISPLC---GSSSYLSFDVTENGFEGDIPLELGKSTNLD 603

Query: 487 QLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEV 546
           +L    N            F G+I + F     L+ L+++ N L G +P+ L  C  L  
Sbjct: 604 RLRLGKN-----------QFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTH 652

Query: 547 LDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG 606
           +D+ NN ++   P WL  LP L  L L SN+F G +   T I        + L  N   G
Sbjct: 653 IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLP--TEIFSLTNILTLFLDGNSLNG 710

Query: 607 VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTID 666
            +P                  E+  +  LN+ N  E+    + G        L+    + 
Sbjct: 711 SIPQ-----------------EIGNLQALNALNLEEN---QLSGPLPSTIGKLSKLFELR 750

Query: 667 LSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP 726
           LS N   G IP  +G+L  L+   ++S+NN TG IPS +  L ++ESLDLS N LVG +P
Sbjct: 751 LSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVP 810

Query: 727 TQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCN 779
            Q+  +K L  LNLSYN  EG + +  QF+ ++ D++VGN+GLCG P L  CN
Sbjct: 811 GQIGDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSP-LSHCN 860

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  146 bits (368), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 192/730 (26%), Positives = 305/730 (41%), Gaps = 123/730 (16%)

Query: 76  LHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASI 135
           L+G IP+   L  L ++  LNLA N     EI S   ++  L  L+L ++   G IP S 
Sbjct: 227 LNGTIPA--ELGRLENLEILNLANNSLT-GEIPSQLGEMSQLQYLSLMANQLQGLIPKS- 282

Query: 136 DLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIY-MTQLDGFKVAEKENWLQEE 194
            L ++  L T             LD+    L  ++ EE + M+QL    +A         
Sbjct: 283 -LADLGNLQT-------------LDLSANNLTGEIPEEFWNMSQLLDLVLANNH------ 322

Query: 195 SFIYLLLHVDDMEIASKSKDEIEKL---KTQLNQEFEMKDLGEAKKILGMEICRNRTCG- 250
                L       I S + + +E+L    TQL+ E  + +L + + +  +++  N   G 
Sbjct: 323 -----LSGSLPKSICSNNTN-LEQLVLSGTQLSGEIPV-ELSKCQSLKQLDLSNNSLAGS 375

Query: 251 ------KTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKST 304
                 + +++  L+  ++TL  ++     S  I +L   + +  Y  N  G      S 
Sbjct: 376 IPEALFELVELTDLYLHNNTLEGTL-----SPSISNLTNLQWLVLYHNNLEGKLPKEISA 430

Query: 305 LQSTVVLSTTEAEYMA-ITKAVKEAIWLQVFVRGRRHYAEP--------------HFSSN 349
           L+   VL   E  +   I + +     L++      H+                 H   N
Sbjct: 431 LRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQN 490

Query: 350 QLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN 409
           +L G +P+S+     L +L L  N+LSG+     F  LK L+ L + NN L         
Sbjct: 491 ELVGGLPASLGNCHQLNILDLADNQLSGSIP-SSFGFLKGLEQLMLYNNSLQ-------- 541

Query: 410 SSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDL 469
                              PD L +L  L   NLS NR++G I       G ++    D+
Sbjct: 542 ----------------GNLPDSLISLRNLTRINLSHNRLNGTIHPLC---GSSSYLSFDV 582

Query: 470 SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR 529
           +NN     +  P       N D       L +  N   GKI         L+ L+++ N 
Sbjct: 583 TNNGFE--DEIPLELGNSQNLDR------LRLGKNQLTGKIPWTLGKIRELSLLDMSSNA 634

Query: 530 LEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIV 589
           L G +PL LV C  L  +D+ NN ++   P WL  L +L  L L SN+F   +   T + 
Sbjct: 635 LTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLP--TELF 692

Query: 590 PFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIK 649
              +  ++ L  N   G +P                  E+  +  LN  N  ++      
Sbjct: 693 NCTKLLVLSLDGNSLNGSIPQ-----------------EIGNLGALNVLNLDKN---QFS 732

Query: 650 GIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT 709
           G   Q    L+    + LS N   G IP  +G+L  L+   ++S+NN TGDIPS +  L+
Sbjct: 733 GSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLS 792

Query: 710 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGL 769
           ++E+LDLS N L G +P  +  +K L  LN+S+N   G + +  QF+ +  DS++GN+GL
Sbjct: 793 KLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGL 850

Query: 770 CGFPLLESCN 779
           CG P L  CN
Sbjct: 851 CGSP-LSRCN 859

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 213/807 (26%), Positives = 334/807 (41%), Gaps = 149/807 (18%)

Query: 35  YQQSRPKMMSWKE-DADCCSWDGVTCDTVAGH-------VIGLDLSCSWLHGNIPSNSSL 86
           +Q S  ++ +W   D   C+W GV C +           V  LDLS   L G +  + S+
Sbjct: 48  FQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIV--SPSI 105

Query: 87  FFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTN 146
             L ++  LNLA+N     +I         L ++ L+++ F GSIP  I+   +S+L + 
Sbjct: 106 GGLVNLVYLNLAYNALT-GDIPREIGNCSKLEVMFLNNNQFGGSIPVEIN--KLSQLRSF 162

Query: 147 YLPIFAFSDCFQLDVKTTFLHDDLEEEI-YMTQLDGFKVAEKENWLQEESFIYLLLHVDD 205
            +     S     ++   +   +LEE + Y   L G       N  +  +F         
Sbjct: 163 NICNNKLSGPLPEEIGDLY---NLEELVAYTNNLTGPLPRSLGNLNKLTTF--------- 210

Query: 206 MEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFE-QDDT 264
               +   D    + T++ +   +K LG A+  +  E+ +        ++G+L + Q+  
Sbjct: 211 ---RAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPK--------EIGMLVKLQEVI 259

Query: 265 LGQS-VNGYVDSDYIGDLDKRRSITGYVFNFAGGPI-----NWKST----LQSTVVLSTT 314
           L Q+  +G++  D IG+L    ++  Y  N   GPI     N KS     L    +  T 
Sbjct: 260 LWQNKFSGFIPKD-IGNLTSLETLALY-GNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTI 317

Query: 315 EAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNR 374
             E   ++K +                 E  FS N LSG IP  + ++  L LL L  N+
Sbjct: 318 PKELGKLSKVM-----------------EIDFSENLLSGEIPVELSKISELRLLYLFQNK 360

Query: 375 LSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRT 434
           L+G     + +KL+NL  L +S N L+      +   F NL                  +
Sbjct: 361 LTGIIP-NELSKLRNLAKLDLSINSLTG----PIPPGFQNL-----------------TS 398

Query: 435 LHQLQWFNLSKNRIHGRISSWMWDLGI-TALYYLDLSNNFLTNIEYFPP-----TNMTQL 488
           + QLQ F+   N + G I      LG+ + L+ +D S N L+     PP     +N+  L
Sbjct: 399 MRQLQLFH---NSLSGVIPQ---GLGLYSPLWVVDFSENQLSG--KIPPFICQQSNLILL 450

Query: 489 NFDSNLT-----------HKVLDMRM--NNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP 535
           N  SN               +L +R+  N   G+   +     NL+ + L+ NR  GPLP
Sbjct: 451 NLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLP 510

Query: 536 LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595
             +  C  L+ L +  NQ + N PN +  L  L    + SN   GPI   + I      +
Sbjct: 511 PEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPI--PSEIANCKMLQ 568

Query: 596 IIDLSHNEFTGVLPT--GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI 653
            +DLS N F G LP   G L   + +               L+ + +  +I  TI     
Sbjct: 569 RLDLSRNSFIGSLPPELGSLHQLEILR--------------LSENRFSGNIPFTIGN--- 611

Query: 654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVES 713
                LT    + +  N F G IP  +G L+ L+   N+S+N+ +G+IP  + NL  +  
Sbjct: 612 -----LTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMY 666

Query: 714 LDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773
           L L++N L G IPT   +L  L   N SYN   G +P    F      S++GN GLCG  
Sbjct: 667 LSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGH 726

Query: 774 LLESCNIDEAPEP------VGSTRFGE 794
            L SC+   +  P       GS R G 
Sbjct: 727 -LRSCDPSHSSWPHISSLKAGSARRGR 752

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 148/465 (31%), Positives = 218/465 (46%), Gaps = 47/465 (10%)

Query: 349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
           N LSG IPS +Y L  L  L LP+N+L+G  +  +  +L+ L  L + +N L     + +
Sbjct: 255 NNLSGVIPSEIYNLSELEQLFLPANQLTGKID-NNITRLRKLTSLALYSNHLEGEIPMDI 313

Query: 409 NSSFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYL 467
             +  +L  L L   NI+   P  L    +L   NL  N++ G ++   +   + +L  L
Sbjct: 314 -GNLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFS-QLQSLKVL 371

Query: 468 DLSNNFLTNI---EYFPPTNMTQLNFDSN-----LTHKVLDMRMNNFNGKISQKFVN--- 516
           DL NN  T     + F   ++T + F  N     ++ +VL++   +F G    K  N   
Sbjct: 372 DLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITG 431

Query: 517 ------SC-NLTNLNLNGNRLEGPLP-----LSLVNCHHLEVLDVGNNQINDNFPNWLEI 564
                  C  L+ L L  N  +  +P     LS      L +  VG  ++    P WL  
Sbjct: 432 ALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLIN 491

Query: 565 LPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN- 623
           L +++V+ L  NRF G I     +   P    +DLS N  TG LP   L   +A+M    
Sbjct: 492 LNKVEVMDLSMNRFVGSIPG--WLGTLPDLFYLDLSDNLLTGELPK-ELFQLRALMSQKI 548

Query: 624 --NNSVEVD-YMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV 680
             NN +E+  ++ P N +             + Q  ++ +   TI +  N   G IP  V
Sbjct: 549 TENNYLELPIFLNPNNVTT------------NQQYNKLYSFPPTIYIRRNNLTGSIPVEV 596

Query: 681 GKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 740
           G+L +L  L  +  NNL+G IP  L NLT +E LDLS+N L G IP  LT+L +LS  N+
Sbjct: 597 GQLKVLHILE-LLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFNV 655

Query: 741 SYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPE 785
           + N  EGPIP   QF+TF   ++ GN  LCG  LL SC    A E
Sbjct: 656 ANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRAKE 700

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  144 bits (362), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 147/489 (30%), Positives = 218/489 (44%), Gaps = 93/489 (19%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            +SN LSGSIP  +++L NL +L L +NRLSG        KL NL  L +S+N+ S    
Sbjct: 213 LASNNLSGSIPQELFQLSNLSVLALQNNRLSGALS-SKLGKLSNLGRLDISSNKFS---- 267

Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
                                + PD+   L++L +F+   N  +G +   + +    ++ 
Sbjct: 268 --------------------GKIPDVFLELNKLWYFSAQSNLFNGEMPRSLSN--SRSIS 305

Query: 466 YLDLSNNFLTNIEYF---PPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGK 509
            L L NN L+   Y      TN+T L+  SN             L  K ++     F  +
Sbjct: 306 LLSLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQ 365

Query: 510 ISQKFVNSCNLTNLN----------------------------LNGNRLEGPLPLSLVNC 541
           I + F N  +LT+L+                            LN  + E P   SL   
Sbjct: 366 IPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVPSL-QF 424

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF----PRFRII 597
            +L+VL + + Q+    P WL   P LQ+L L  N+  G      TI P+         +
Sbjct: 425 KNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSG------TIPPWLGSLNSLFYL 478

Query: 598 DLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIER 657
           DLS+N F G +P   L + ++++   N   E     P     +++       G+  Q  +
Sbjct: 479 DLSNNTFIGEIPHS-LTSLQSLVSKENAVEEPSPDFP-----FFKKKNTNAGGL--QYNQ 530

Query: 658 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLS 717
             +    IDLS N   G I    G L  L  LN + +NNL+G+IP+ L  +T +E LDLS
Sbjct: 531 PSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLN-LKNNNLSGNIPANLSGMTSLEVLDLS 589

Query: 718 SNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLES 777
            N L G+IP  L  L +LS  +++YN+  GPIP G QF TF N S+ GN GLCG      
Sbjct: 590 HNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCG-EHASP 648

Query: 778 CNI-DEAPE 785
           C+I D++P 
Sbjct: 649 CHITDQSPH 657

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  141 bits (356), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 200/796 (25%), Positives = 320/796 (40%), Gaps = 125/796 (15%)

Query: 52  CSWDGVTCDTVAGHVIG------------------------LDLSCSWLHGNIPSNSSLF 87
           C+W G+TCD+  GHV+                         LDL+ +   G IP+   + 
Sbjct: 61  CNWTGITCDS-TGHVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPA--EIG 117

Query: 88  FLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNY 147
            L  + +L L  N F+ S I SG  +L+++  L+L ++   G +P  I         T+ 
Sbjct: 118 KLTELNQLILYLNYFSGS-IPSGIWELKNIFYLDLRNNLLSGDVPEEI-------CKTSS 169

Query: 148 LPIFAFS---------DCF------------------QLDVKTTFLHDDLEEEIYMTQLD 180
           L +  F          +C                    + V    L +  + ++   QL 
Sbjct: 170 LVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLT 229

Query: 181 GFKVAEKENWLQEESFIYL--LLHVD-DMEIAS-KSKDEIEKLKTQLNQEFEMKDLGEAK 236
           G    +  N L  +S +    LL  D   EI +  S  ++E    QL  +    +LG   
Sbjct: 230 GKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIP-AELGNLV 288

Query: 237 KILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVD--SDYIGDLDKRRSITGYVFNF 294
           ++  + I +N+             Q   LG S N  V   S+ IG L+    +T +  NF
Sbjct: 289 QLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNF 348

Query: 295 AGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGS 354
            G      + L++  VL+     +  I+  +   + L   +R    +       N L+G 
Sbjct: 349 TGEFPQSITNLRNLTVLTVG---FNNISGELPADLGLLTNLRNLSAH------DNLLTGP 399

Query: 355 IPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPN 414
           IPSS+     L LL L  N+++G      F ++ NL ++ +  N  +             
Sbjct: 400 IPSSISNCTGLKLLDLSHNQMTGEIP-RGFGRM-NLTFISIGRNHFT------------- 444

Query: 415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFL 474
                       E PD +     L+  +++ N + G +   +  L    L  L +S N L
Sbjct: 445 -----------GEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL--QKLRILQVSYNSL 491

Query: 475 TNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL 534
           T        N+  LN        +L +  N F G+I ++  N   L  L +  N LEGP+
Sbjct: 492 TGPIPREIGNLKDLN--------ILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPI 543

Query: 535 PLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRF 594
           P  + +   L VLD+ NN+ +   P     L  L  L L+ N+F G I    ++      
Sbjct: 544 PEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP--ASLKSLSLL 601

Query: 595 RIIDLSHNEFTGVLPTGYLDNFKAM---MHGNNNSVEVDYMTPLNSSNYYESIILTIKGI 651
              D+S N  TG +P   L + K M   ++ +NN +       L      + I L+    
Sbjct: 602 NTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLF 661

Query: 652 DIQIERILTI---FMTIDLSSNKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSLLRN 707
              I R L       T+D S N   G IP EV   ++++  LN +S N+ +G+IP    N
Sbjct: 662 SGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLN-LSRNSFSGEIPQSFGN 720

Query: 708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNS 767
           +T + SLDLSSN L G IP  L +L  L  L L+ N  +G +P+   F        +GN+
Sbjct: 721 MTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNT 780

Query: 768 GLCGFPL-LESCNIDE 782
            LCG    L+ C I +
Sbjct: 781 DLCGSKKPLKPCTIKQ 796

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 154/500 (30%), Positives = 229/500 (45%), Gaps = 40/500 (8%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYD-FAKLKNLKWLFVSNNRLSLST 404
            S N L G IPS+++    L  L L  NR SG         +L+ L+ L +S+N LS S 
Sbjct: 180 LSHNHLEGQIPSTLFRCSVLNSLNLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSI 239

Query: 405 KLKVNSSFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
            L +  S  NL  L L     S   P  +     L   +LS N   G +   +  L   +
Sbjct: 240 PLGI-LSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDLSSNHFSGELPRTLQKL--KS 296

Query: 464 LYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
           L + D+SNN L+    FPP   +MT       L H  LD   N   GK+     N  +L 
Sbjct: 297 LNHFDVSNNLLSG--DFPPWIGDMT------GLVH--LDFSSNELTGKLPSSISNLRSLK 346

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
           +LNL+ N+L G +P SL +C  L ++ +  N  + N P+    L  LQ +    N   G 
Sbjct: 347 DLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDL-GLQEMDFSGNGLTGS 405

Query: 582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN------NNSV--EVDYMT 633
           I   ++ + F     +DLSHN  TG +P G +  F  M + N      N  V  E++++ 
Sbjct: 406 IPRGSSRL-FESLIRLDLSHNSLTGSIP-GEVGLFIHMRYLNLSWNHFNTRVPPEIEFLQ 463

Query: 634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
            L   +   S ++     DI   + L I   + L  N   G IPE +G  + LK L ++S
Sbjct: 464 NLTVLDLRNSALIGSVPADICESQSLQI---LQLDGNSLTGSIPEGIGNCSSLK-LLSLS 519

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
           HNNLTG IP  L NL E++ L L +N L G IP +L  L+ L ++N+S+N+  G +P G 
Sbjct: 520 HNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGD 579

Query: 754 QFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEP--VGSTRFGEEEN-----ASSWFDWKF 806
            F +    +  GN G+C  PLL        P+P  +    +G   N     AS       
Sbjct: 580 VFQSLDQSAIQGNLGICS-PLLRGPCTLNVPKPLVINPNSYGNGNNMPGNRASGGSGTFH 638

Query: 807 AKMGYGSGLVIGLSIGYIVF 826
            +M     +++ +S   ++F
Sbjct: 639 RRMFLSVSVIVAISAAILIF 658

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  140 bits (353), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 138/469 (29%), Positives = 204/469 (43%), Gaps = 80/469 (17%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           H  SN+L+G +P  +Y +  L  L L  N LSG     + + L  LK L +S NR S   
Sbjct: 214 HIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELS-KNLSNLSGLKSLLISENRFS--- 269

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
                                   PD+   L QL+  ++S N+  GR    +     + L
Sbjct: 270 ---------------------DVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQ--CSKL 306

Query: 465 YYLDLSNNFLT---NIEYFPPTNMTQLNFDSN---------LTH----KVLDMRMNNFNG 508
             LDL NN L+   N+ +   T++  L+  SN         L H    K+L +  N F G
Sbjct: 307 RVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFRG 366

Query: 509 KISQKFVN-------------------------SC-NLTNLNLNGNRLEGPLPLSLVNCH 542
           KI   F N                          C NL+ L L+ N +   +P ++    
Sbjct: 367 KIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNNVTGFD 426

Query: 543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHN 602
           +L +L +GN  +    P+WL    +L+VL L  N F+G I     I        ID S+N
Sbjct: 427 NLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPH--WIGKMESLFYIDFSNN 484

Query: 603 EFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI-QIERILTI 661
             TG +P   +   K ++  N  + +   MT  +    Y     +  G+   Q+ R    
Sbjct: 485 TLTGAIPVA-ITELKNLIRLNGTASQ---MTDSSGIPLYVKRNKSSNGLPYNQVSRFPP- 539

Query: 662 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML 721
             +I L++N+  G I   +G+L  L  L+ +S NN TG IP  +  L  +E LDLS N L
Sbjct: 540 --SIYLNNNRLNGTILPEIGRLKELHMLD-LSRNNFTGTIPDSISGLDNLEVLDLSYNHL 596

Query: 722 VGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLC 770
            G IP    SL +LS  +++YN+  G IP G QF +F + S+ GN GLC
Sbjct: 597 YGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  139 bits (351), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 146/477 (30%), Positives = 213/477 (44%), Gaps = 54/477 (11%)

Query: 349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
           N LSG IP  +Y L  L  L LP NRLSG  +     +L  L  L + +N +       +
Sbjct: 257 NNLSGEIPKEIYNLPELEQLFLPVNRLSGKID-NGITRLTKLTLLELYSNHIEGEIPKDI 315

Query: 409 NSSFPNLFGLGLSACNI-SEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYL 467
                 L  L L   N+    P  L    +L   NL  N++ G +S+  +     +L  L
Sbjct: 316 -GKLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSR-FQSLSIL 373

Query: 468 DLSNNFLTNIEYFPPT-----NMTQLNFDSN-----LTHKVLDM-----------RMNNF 506
           DL NN  T    FP T      MT + F  N     ++ +VL++           +M N 
Sbjct: 374 DLGNNSFTG--EFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNL 431

Query: 507 NGKISQKFVNSCN-LTNLNLNGNRLEGPLP-----LSLVNCHHLEVLDVGNNQINDNFPN 560
            G +S   +  C  L+ L +  N  +  +P     L       L++  +G  ++    P 
Sbjct: 432 TGALS--ILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFGIGACRLTGEIPA 489

Query: 561 WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM 620
           WL  L  ++V+ L  NRF G I     +   P    +DLS N  TG LP         M 
Sbjct: 490 WLIKLQRVEVMDLSMNRFVGTIPG--WLGTLPDLFYLDLSDNFLTGELPKELFQLRALMS 547

Query: 621 HGNNNSVEVDYMT-PL--NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP 677
               ++ E +Y+  P+  N +N            + Q  ++ ++  TI +  N   G IP
Sbjct: 548 QKAYDATERNYLELPVFVNPNNVT---------TNQQYNQLSSLPPTIYIKRNNLTGTIP 598

Query: 678 EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 737
             VG+L +L  L  +  NN +G IP  L NLT +E LDLS+N L G IP  LT L +LS 
Sbjct: 599 VEVGQLKVLHILELLG-NNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSY 657

Query: 738 LNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGE 794
            N++ N   GPIP G+QF+TF   ++ GN  LCG  LL SC+    P    +T+ G+
Sbjct: 658 FNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCD----PTQHSTTKMGK 710

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	892
224116970	921	predicted protein [Populus trichocarpa]	0.858	0.831	0.406	1e-151
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.897	0.813	0.383	1e-131
164605528	912	CM0545.410.nc [Lotus japonicus]	0.893	0.873	0.371	1e-124
359493539	1001	PREDICTED: receptor-like protein 12-like	0.903	0.805	0.368	1e-124
225462116	1001	PREDICTED: receptor-like protein 12-like	0.536	0.478	0.486	1e-123
224128143	923	predicted protein [Populus trichocarpa]	0.829	0.801	0.348	1e-110
255568090	1014	serine/threonine-protein kinase bri1, pu	0.553	0.487	0.434	1e-108
357493511	1020	Receptor-like protein kinase [Medicago t	0.803	0.702	0.364	1e-106
359493544	978	PREDICTED: receptor-like protein 12-like	0.790	0.720	0.376	1e-106
225455498	980	PREDICTED: receptor-like protein 12-like	0.505	0.460	0.445	1e-106

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 376/926 (40%), Positives = 494/926 (53%), Gaps = 160/926 (17%)

Query: 42  MMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFND 101
           M SWK   DCCSWDGV C  V GHVI LDLSCS L GN+ SNSSLF L H+R+LNLAFN 
Sbjct: 1   MASWKSGTDCCSWDGVACHGVTGHVIALDLSCSGLRGNLSSNSSLFHLSHLRRLNLAFNY 60

Query: 102 FNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYL----PIFAFSDCF 157
           FN S I   F    SLT LNLSS+ F G +P  I   ++S+L +  L    P+   +   
Sbjct: 61  FNRSSIPPEFGMFSSLTHLNLSSTWFSGQVPTEIS--HLSKLISLDLSLNEPLILEAPAM 118

Query: 158 QLDVKT-TFLHDDLEEEIYMTQLD-------------------GFKVAEKENWLQEESFI 197
           ++ V+  T + +   + I M+ +D                   G +    EN       I
Sbjct: 119 KMIVQNLTLVREIFLDYINMSSVDLGSLMNLSSSLTSLSLNLCGLQGQFPEN-------I 171

Query: 198 YLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGM-EICRNRTCGKTMDVG 256
           + L ++  + +   S        +  +   E+  LG      G+ EI  N    K +D+G
Sbjct: 172 FHLPNLQLLSLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLG 231

Query: 257 LL------------FEQDDTLGQSVNGYVDS--DYIGDLDKRRSITGYVFNFAGGPINWK 302
                          +Q + L  S N +     D  G+L K  S++  V NF+G      
Sbjct: 232 NCAFYGSVPASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNFSG------ 285

Query: 303 STLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPS----- 357
             +  + V + TE   + +++   E   L   + G  +      S N LSG+IPS     
Sbjct: 286 --MLPSSVFNLTELLRLDLSQNQLEGT-LPDHICGLDNVTYLDLSYNLLSGTIPSCLFGL 342

Query: 358 ------------------------------SVYELENLILLRLPSNRLSGTTELYDFAKL 387
                                         S+ EL NL    + SN LSG  +L  F+ +
Sbjct: 343 PSLVWFNLNNNHLTGELGEHCNKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNM 402

Query: 388 KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNR 447
           KNL  L +S+N LS+ T    NS++P  + L LS+CNI EFPD L+  +QL + +LS NR
Sbjct: 403 KNLWGLDLSHNSLSVVTNNNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNR 462

Query: 448 IHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL------------- 494
           IHG I  W+   G+ +L YLDLS+NFLT +   PP+ +  L+  SNL             
Sbjct: 463 IHGEIPKWLSAKGMQSLQYLDLSHNFLTIVNELPPS-LQYLDLTSNLLQQPFPILPQSMY 521

Query: 495 ---------------------THKVLDMRMNNFNGKISQ--------------------- 512
                                T +++++  N+ +G I Q                     
Sbjct: 522 ILLIANNKLTGEIPPWICNITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHG 581

Query: 513 ----KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPEL 568
                F     + +L+LNGN LEG LPLSL NC  LEVLD+GNN IND+FP WL+ LP+L
Sbjct: 582 TIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKL 641

Query: 569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVE 628
           QVL+LRSNR  G IG+ T I PF   RIIDLSHNEF G+LPT Y+ NF+AM   +    E
Sbjct: 642 QVLVLRSNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDG---E 698

Query: 629 VDYMTPLNSSNYYE-SIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 687
           V          YY+ SI+LT+KG +I +ERILTIF TIDLSSN+F+G IP+ VG L+ L 
Sbjct: 699 VKATPKYIGEIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLI 758

Query: 688 GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747
            L NIS N++TG IPS L NLT +ESLDLSSN L G IP+QLT L +L+VLNLSYNQ  G
Sbjct: 759 VL-NISRNSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVG 817

Query: 748 PIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFA 807
           PIP GSQF+TF+NDSYVGN  LCGFPL   C+ D AP+P     F E+E+ +S F+WKFA
Sbjct: 818 PIPHGSQFDTFQNDSYVGNLRLCGFPLSVKCSGDVAPQP---PPFQEKEDPASLFNWKFA 874

Query: 808 KMGYGSGLVIGLSIGYIVFGTGKPRW 833
            +GYG GLVIGLS+GYIVF TGKP+W
Sbjct: 875 MIGYGCGLVIGLSVGYIVFTTGKPQW 900

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 367/957 (38%), Positives = 484/957 (50%), Gaps = 156/957 (16%)

Query: 2   SAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDT 61
           S KLC H Q+ ALL FKQ FS +  SS  CD       PK  SWK+ +DCCSWDGVTCD 
Sbjct: 30  STKLCPHHQAIALLHFKQSFSIDNSSSWYCDYYDVTFYPKTESWKKGSDCCSWDGVTCDW 89

Query: 62  VAGHVIGLDLSCSWLHGNIPSNSSLFFLPH-------------------------IRKLN 96
           V GHVI LDLSCSWL G I SN++LF LPH                         +  LN
Sbjct: 90  VTGHVIELDLSCSWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSSLTHLN 149

Query: 97  LAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLI--NVSRLSTNYLPIFAFS 154
           L  ++F+   IS   S L +L  L+LS +      P   D +  N+++L   +L   + S
Sbjct: 150 LCDSEFS-GPISPEISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISIS 208

Query: 155 DCF-----------QLDVKTTFLHDDL-EEEIYMTQLD------------GFKVAEKENW 190
             F            LD+    LH    + +I++ +L+             F    + N 
Sbjct: 209 SIFPKFLLNWASLVSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQFSENNS 268

Query: 191 LQE-------------------ESFIYLLLHVDDMEIASKSKDEIEKLKTQL-----NQE 226
           L E                   +S   L+LH  +   +      I  LK+ +       E
Sbjct: 269 LTELYLSSKNFSGELPASIGNLKSLKILVLH--NCGFSGSIPSSIGNLKSLMVLAMPGCE 326

Query: 227 FE---MKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDD---TLGQSVNGYVDS--DYI 278
           F       LG   +I+ + + RN   GK   V   F       +LG + N +       I
Sbjct: 327 FSGSIPASLGNLTQIIALHLDRNHFSGKISKVINFFNNFRNLISLGLASNNFSGQLPPSI 386

Query: 279 GDLDKRRSIT-GYVFNFAGGPI-NWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVR 336
           G+L   + +     FN   G I +W  T+ S V L   +  +  +T  + E      F  
Sbjct: 387 GNLTNLQDLYFSDNFNMFNGTIPSWLYTMPSLVQL---DLSHNKLTGHIGE------FQF 437

Query: 337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS 396
               Y +   S N+L GSIP S+++L NL  L L SN  SG  E  +F KL+NL  L +S
Sbjct: 438 DSLEYID--LSMNELHGSIPGSIFKLINLRYLFLSSNNFSGVLETSNFGKLRNLTSLDLS 495

Query: 397 NNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHG-RISSW 455
           NN LSL+T     S  P +  L LS  NIS         + LQ+ NLS N I G  +  W
Sbjct: 496 NNMLSLTTSDDSKSMLPYIESLDLSNNNISGIWSWNMGKNTLQYLNLSYNLISGFEMLPW 555

Query: 456 MWDLGITALYYLDLSNNFLTNIEYFPPT-------------------------------- 483
                   LY LDL +N L      PP                                 
Sbjct: 556 ------KNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMRILDLS 609

Query: 484 --NMTQL------NFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP 535
             N++ +      NF   L+  VL++  N F+G I Q F+    + NL+ NGN+LEG LP
Sbjct: 610 NNNLSGMLPLCLGNFSKYLS--VLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEGLLP 667

Query: 536 LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595
            SL+ C  LEVLD+GNN+IND FP+WL  LPELQVL+LRSN F G IG +    PF   R
Sbjct: 668 RSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPFMSLR 727

Query: 596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQI 655
           IIDL++N+F G LP  YL + KA M+ +  ++   YM     S Y +S+++TIKG++I+ 
Sbjct: 728 IIDLAYNDFEGDLPEMYLRSLKATMNVDEGNMTRKYM---GDSYYQDSVMVTIKGLEIEF 784

Query: 656 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLD 715
            +IL  F TIDLSSNKFQG IP+ +G LN L+GL N+SHN+L G IPS  +NL  +ESLD
Sbjct: 785 VKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGL-NLSHNSLAGHIPSSFKNLKLLESLD 843

Query: 716 LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLL 775
           LSSN L+G IP +LTSL +L VLNLS N   G IP+G+QF+TF NDSY  NSGLCGFPL 
Sbjct: 844 LSSNKLIGSIPQELTSLTFLEVLNLSENHLTGFIPRGNQFDTFGNDSYSENSGLCGFPLS 903

Query: 776 ESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPR 832
           + C  DEA E   S++  +EE     FDWK   MGYG GLVIGLS+G ++F TGKP+
Sbjct: 904 KKCITDEASE---SSKEADEE-FDGGFDWKITLMGYGCGLVIGLSLGCLIFLTGKPK 956

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164605528|dbj|BAF98594.1| CM0545.410.nc [Lotus japonicus]

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 337/907 (37%), Positives = 468/907 (51%), Gaps = 110/907 (12%)

Query: 5   LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQS-RPKMMSWKEDADCCSWDGVTCDTVA 63
           LC+H  SSALLQFK   SF  +++ D D     S  P   SWK   DCC WDGVTCD+V+
Sbjct: 26  LCNHHDSSALLQFKN--SFVVNTAVDFDGRRCSSYSPMTESWKNGTDCCEWDGVTCDSVS 83

Query: 64  GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLS 123
           GHVIGLDLSC  L G   +NS++F L H+++LNLA+NDF  S + S    L  LT LNLS
Sbjct: 84  GHVIGLDLSCGHLQGEFHANSTIFHLRHLQQLNLAYNDFFGSPLYSYIGNLFYLTHLNLS 143

Query: 124 SSNFMGSIPASID-LINVSRLSTNYLPI-FAFSDCFQLDVKTTFLHDDLEEEIYMTQLDG 181
            S   G IP++I  L  +  L  +YL +    S   +L + TT L      E+++  +D 
Sbjct: 144 YSRISGDIPSTISHLSKLVSLDLSYLRMRLDPSTWKKLILNTTNL-----RELHLDLVDM 198

Query: 182 FKVAEKE------------------NWLQEE--SFIYLLLHVDDMEIASKSKDEIEKLKT 221
             + +                    N LQ    S I+ L ++ +++++   +   +  K+
Sbjct: 199 SSIRDTSLSLLTNLSSSLVSLHLSMNGLQGNFPSDIFCLPNLQELDLSHNDQLRGQLPKS 258

Query: 222 QLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLL--FEQDDTLGQSVNGYVDSDYIG 279
                    DL +           + + G    +G L   ++ D  G  +NG V    +G
Sbjct: 259 NWRTPLRYLDLSQ----------NSLSGGIPNSIGNLKSLKELDLSGCELNGQVPLKTVG 308

Query: 280 DLDKRRSITGYVFNFAGGPI-NWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGR 338
            L + RS+  +  N   G I +W  +L     LS  +     +T ++ E +   +     
Sbjct: 309 -LSRLRSLD-FSDNMINGTIPHWCYSLP---FLSYLDFSNNQLTGSISEFLTYSLEFM-- 361

Query: 339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN 398
                 + S+N+L G  P S++E EN+  L L S  LS     + F+KL+NL  L +S+ 
Sbjct: 362 ------YLSNNKLHGKCPDSMFEFENITELDLSSTHLSVFVNFHQFSKLQNLALLNLSHT 415

Query: 399 R-LSLSTKLKVNSSFPNLFGLGLSACNI-SEFPDILRTLHQLQWFNLSKNRIHGRISSW- 455
             LS++    V    PNL  L LS+CNI S FP  L  L   Q  +LS N+IHG+I  W 
Sbjct: 416 SFLSINIDSSVEKCLPNLEYLYLSSCNIDSSFPKFLARLQNPQVLDLSNNKIHGKIPKWF 475

Query: 456 ------------MWDLGITAL------------YYLDLSNNFLTNIEYFPPTNMTQLNFD 491
                       + DL    L            Y+L  +NNF  +I      N + LN  
Sbjct: 476 HERLLHSWLNMKLIDLSFNKLRGELPIPPYGTEYFLVSNNNFSGDIAS-TICNASSLNI- 533

Query: 492 SNLTH-----------------KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL 534
            NL H                  VLD+ MNN +G +   F  +     + LNGNRLEGPL
Sbjct: 534 LNLAHNNLIGTIPACLGTFPSLSVLDLHMNNLHGCMPINFFENNAFETIKLNGNRLEGPL 593

Query: 535 PLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRF 594
           P SL +C  LEVLD+G+N I D FP+WLE L EL+VL +RSNR  G I  +    PFP+ 
Sbjct: 594 PRSLAHCMKLEVLDIGDNNIEDPFPSWLETLHELKVLSVRSNRLHGVITCSRNKYPFPKL 653

Query: 595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654
           RI+D+S+N F+G LP     NF+ MM+ +++     YM   ++  Y + +++ +K  +++
Sbjct: 654 RILDVSNNNFSGPLPASCFMNFQGMMNVSDDQSRSLYMD--DTMYYNDFVVVVMKDQEME 711

Query: 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESL 714
           ++RILT F TIDLS+N F+GGIP+V+G+L  L GL N+SHN + G IP  L NL  +E L
Sbjct: 712 LKRILTAFTTIDLSNNMFEGGIPKVIGELKSLIGL-NLSHNGIKGSIPHSLSNLRNLECL 770

Query: 715 DLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL 774
           DLS N L G IP  LTSL +LS LNLS N  EG IP G QF+TF N SY GN  LCG PL
Sbjct: 771 DLSWNQLTGDIPMALTSLNFLSTLNLSQNHLEGIIPTGRQFDTFGNYSYKGNPMLCGIPL 830

Query: 775 LESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRWL 834
            +SCN DE   P  S      +N  S F WK   +GY  G V G+ +GY +F T KP+WL
Sbjct: 831 SKSCNKDEEQLPYASF-----QNEESGFGWKSVVVGYACGAVFGMLLGYNLFLTAKPQWL 885

Query: 835 EFYTYGM 841
                G+
Sbjct: 886 TTLVEGL 892

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 358/971 (36%), Positives = 479/971 (49%), Gaps = 165/971 (16%)

Query: 3   AKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTV 62
            KLC H Q+ ALL  KQ FS +  SS DCD     S PK  SWK+ +DCCSWDGVTCD V
Sbjct: 28  TKLCPHQQALALLHLKQSFSIDNSSSWDCDSNGITSYPKTESWKKGSDCCSWDGVTCDWV 87

Query: 63  AGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNL 122
            GH+IGLDLSCS L G I SN++LF L H+++LNLAFN+FN S IS+GF +  SLT  NL
Sbjct: 88  TGHIIGLDLSCSRLFGTIHSNTTLFLLLHLQRLNLAFNNFNGSSISAGFGRFSSLTHFNL 147

Query: 123 SSSNFMGSIPASIDLINV---SRLSTNYLPIFA---FSDCFQLDVKTTFLHDDLEEEIYM 176
           S S F G I   I  ++      LS NY   FA   F+   Q   K   LH         
Sbjct: 148 SYSGFSGLIAPEISHLSTLVSLDLSENYGAEFAPHGFNSLVQNLTKLQKLH--------- 198

Query: 177 TQLDGFKVAE--KENWLQEESFIYLLLHVDDMEIASKSKD----EIEKLKTQLNQEFE-- 228
             L G  ++     + L   S I + L    +       D    ++E L    N +    
Sbjct: 199 --LRGISISSVFPNSLLNRSSLISIDLSGCGLHGRFPDHDIHLPKLEVLDLWRNDDLSGN 256

Query: 229 MKDLGEAKKILGMEICRNRTCGK-TMDVGLL--FEQDDTLGQSVNGYVDSDYIGDLDKRR 285
                E   ++ +++      G+    +G L   +  D  G   +G++ +  IG+L   +
Sbjct: 257 FPRFSENNSLMELDLSFTNLSGELPASIGNLKSLQTLDLSGCEFSGFIHTS-IGNLKSLQ 315

Query: 286 SITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYM-AITKAVKEAIWLQVF---------- 334
           ++      F+G        L+S   L  ++ E+  +I  ++     LQ            
Sbjct: 316 TLDLSGCEFSGFIPTSIGNLKSLQTLDLSDCEFSGSIPTSIGNLKSLQTLDLSNCEFLGS 375

Query: 335 ----VRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGT--TELYDFA--- 385
               +   +     +  SN  SG +P S+  L NL  LR  +N  +GT  ++LY      
Sbjct: 376 IPTSIGNLKSLRSLYLFSNNFSGQLPPSIGNLTNLQNLRFSNNLFNGTIPSQLYTLPSLV 435

Query: 386 ----------------------------------------KLKNLKWLFVSNNRLSLSTK 405
                                                   KL NL++L++ +N LS   +
Sbjct: 436 NLDLSHKKLTGHIGEFQFDSLEYIDLSMNELHGPIPSSIFKLANLEFLYLYSNNLSGVLE 495

Query: 406 LKVNSSFPNLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
                   NL  L LS   +S     +    L  ++  +LS N+I G I SW  ++G   
Sbjct: 496 TSNFGKLRNLTLLVLSNNMLSLITSGNSNSILPYIERLDLSNNKISG-IWSW--NMGKDT 552

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL----------------------------- 494
           L YL+LS N ++  E  P  NM  L+  SNL                             
Sbjct: 553 LLYLNLSYNIISGFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPL 612

Query: 495 -----THKVLDMRMNNFNG-------------------------KISQKFVNSCNLTNLN 524
                +  VLD+  NN +G                          I Q F+    + NL+
Sbjct: 613 ICKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLD 672

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
            N N+LEG +P SL+    LEVLD+GNN+IND FP+WL  LPELQVL+LRSN F G IG 
Sbjct: 673 FNDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTFPHWLRTLPELQVLVLRSNSFHGHIGF 732

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESI 644
           +    PF   RIIDL+HN+F G LP  YL + KA+M+ +  ++   YM       Y +SI
Sbjct: 733 SKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMARKYM---GEYYYQDSI 789

Query: 645 ILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSL 704
            +T KG+D+++ +IL  F T+DLSSNKFQG IP+ +G LN L+GL N+SHNNLTG IPS 
Sbjct: 790 TVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGL-NLSHNNLTGLIPSS 848

Query: 705 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYV 764
             NL  +ESLDLSSN L+G IP QLTSL +L VLNLS N   G IP+G+QF+TF NDSY 
Sbjct: 849 FGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYN 908

Query: 765 GNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENAS--SWFDWKFAKMGYGSGLVIGLSIG 822
            NSGLCGFPL + C  DE PEP       +E +A     FDWK   MGYG GLVIGLS+G
Sbjct: 909 ENSGLCGFPLSKKCIADETPEP------SKEADAKFDGGFDWKITLMGYGCGLVIGLSLG 962

Query: 823 YIVFGTGKPRW 833
            +VF TGKP+W
Sbjct: 963 CLVFLTGKPKW 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/526 (48%), Positives = 324/526 (61%), Gaps = 47/526 (8%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            SSN+L G +PSS++EL NL  L+L SN L G  E   F  L+NL +L +S N L+LS  
Sbjct: 457 LSSNELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMFMNLENLVYLDLSYNILTLSNY 516

Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
              N + P L  L LS+CNISEFP  L +   L++ +LS N+I+G++  W W++G   L 
Sbjct: 517 SHSNCALPFLETLLLSSCNISEFPRFLCSQEVLEFLDLSNNKIYGQLPKWAWNMGTETLS 576

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH----------------------------- 496
           Y +LS N LT  E FP  NM  L+  SNL                               
Sbjct: 577 YFNLSQNLLTRFERFPWKNMLFLDLHSNLLQGPLPSLICEMSYISVLDFSNNNLSGLIPQ 636

Query: 497 ---------KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL 547
                     VLD+RMN  +G I + F     + NL  NGN+LEGPLP SL+NC  L+VL
Sbjct: 637 CLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVL 696

Query: 548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
           D+GNN+IND FP WLE LPELQVLILRSNRF G I  +    PFP+ RI+DLS N+F+G 
Sbjct: 697 DLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGS 756

Query: 608 LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDL 667
           LP  YL NFKAMM+   + +++ YM       Y +SI+ TIKG D +   IL+ F TIDL
Sbjct: 757 LPEMYLKNFKAMMNVTEDKMKLKYM---GEYYYRDSIMGTIKGFDFEF-VILSTFTTIDL 812

Query: 668 SSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPT 727
           SSN+FQG I + +G L+ L+ L N+SHNNLTG IPS L NL  +ESLDLSSN L G IP 
Sbjct: 813 SSNRFQGEILDFIGSLSSLREL-NLSHNNLTGHIPSSLGNLMVLESLDLSSNKLSGRIPR 871

Query: 728 QLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPV 787
           +LTSL +L VLNLS N   G IP+G+QF+TF N+SY GN GLCG PL + C +DEAP+P 
Sbjct: 872 ELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCVVDEAPQPP 931

Query: 788 GSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRW 833
                 EE  + + FDWK   MGYG GLV+GL +G +VF T KP+W
Sbjct: 932 KE----EEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKW 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 302/867 (34%), Positives = 433/867 (49%), Gaps = 127/867 (14%)

Query: 5   LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWK---EDADCCSWDGVTCDT 61
           LC   + SALL F Q FS      S+   +   + PK  SWK   E +DCC WDGV CD 
Sbjct: 28  LCHGVERSALLHFMQSFS-----ISNNASISSYAYPKTASWKIRGESSDCCLWDGVECDE 82

Query: 62  VAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLN 121
             G+VIGLDL  S LHG+I S SSLF L H+R+LNL  NDFNYS++ S  + L SLT LN
Sbjct: 83  DTGYVIGLDLGGSSLHGSINSTSSLFQLVHLRRLNLGGNDFNYSQVPSRLALLSSLTYLN 142

Query: 122 LSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDG 181
           LS+S F G +P               L I   S    LD+    +     + + +   D 
Sbjct: 143 LSNSMFYGEVP---------------LEITELSHLTSLDLGRN-VDSSARKLLELGSFDL 186

Query: 182 FKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLK--TQLN------QEFEMKDLG 233
            ++A+    L++       L +  + I+S   D +  L   T LN      Q       G
Sbjct: 187 RRLAQNFTGLEQ-------LDLSSVNISSTVPDALANLSSLTFLNLEDCNLQGLIPSSFG 239

Query: 234 EAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDS--DYIGDLDKRRSITGYV 291
           +  K+  + +  N   G+         Q + L  S N ++     ++G+L+K R++    
Sbjct: 240 DLTKLGYLNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSWLGNLNKIRALHLSD 299

Query: 292 FNFAGG-PINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQ 350
            N  G  P++ ++ +   + L  +           K  +W+    +        H   N+
Sbjct: 300 INLVGEIPLSLRN-MTRIIQLHLSNNRLTG-----KIPLWISNLTQ----LTLVHLRHNE 349

Query: 351 LSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS 410
           L G IP S+ +L NL  L+L  N LSGT E   FA LK+L  L +  N L++ T +  N+
Sbjct: 350 LQGPIPESMSKLVNLEELKLEYNHLSGTIEFSMFASLKHLTMLQIRRNNLTVLTNISDNT 409

Query: 411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG---------- 460
           + P    L L  CN+SEFPD LR+  +L + +L +NRI G+I  W+ D+G          
Sbjct: 410 TLPKFKYLALGDCNLSEFPDFLRSQDELIYLHLGRNRIQGQIPKWLGDIGHKTLSILILR 469

Query: 461 ---------------ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHK------- 497
                          +T L +L+L +N L      PP ++   +  +N LT +       
Sbjct: 470 NNLFSGFEQSWELSLLTKLQWLELDSNKLEGQLPIPPPSLIGYSISNNSLTGEILPSLCN 529

Query: 498 ------------------------------VLDMRMNNFNGKISQKFVNSCNLTNLNLNG 527
                                         VL++  N F+G+I Q F +  NL  ++L+ 
Sbjct: 530 LRSLGFLDLSYNKLSGMFPNCLGDFSDSLLVLNLSNNFFHGRIPQAFRDESNLRMIDLSH 589

Query: 528 NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTT 587
           N+LEG LP SL NC  +E+LD+  N+I+D FP WL  LPELQVLILRSN+F+G I     
Sbjct: 590 NQLEGQLPRSLTNCRMMEILDLSYNRISDKFPFWLANLPELQVLILRSNQFFGSIKSPGA 649

Query: 588 IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT-------PLNSSN- 639
           ++ F + +IIDLS+N FTG+LP+ +    ++M    ++  E  YM        P+ S + 
Sbjct: 650 MLEFRKLQIIDLSYNNFTGILPSEFFQTLRSMRF--SDLKEFTYMQTIHTFQLPVYSRDF 707

Query: 640 -YYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
            Y   I L  KG+ ++  +I  +   IDLSSN FQG IP+ +G    +  L N+S+N+L+
Sbjct: 708 TYRYEINLANKGVYMKYWQIPNVIAAIDLSSNAFQGDIPQSIGTREKVNAL-NLSNNHLS 766

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTF 758
           GDIPS+L NL  +ESLDLS NML G IP  LT L +L+  N+S+NQ EGPIPQG QFNTF
Sbjct: 767 GDIPSVLGNLANLESLDLSQNMLSGEIPQYLTQLTFLAYFNVSHNQLEGPIPQGKQFNTF 826

Query: 759 RNDSYVGNSGLCGFPLLESCNIDEAPE 785
            N SY GNSGL    L +     E P+
Sbjct: 827 DNSSYEGNSGLYMKHLPKKSECSEPPQ 853

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/571 (43%), Positives = 326/571 (57%), Gaps = 77/571 (13%)

Query: 339 RHYAEPHFSS--------NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDF-AKLKN 389
           +H+  PH SS        N + G IP S++EL NL  L L SN+LSG  E          
Sbjct: 420 KHFQNPHHSSLKYVRLSDNMIDGPIPISIFELTNLTELDLSSNKLSGIIEWSMLQKLKNL 479

Query: 390 LKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH 449
                 +N++LSL++   ++ +  NL+ + LS+CNI+EFP  L T   L   +LS NRIH
Sbjct: 480 ENLNLSNNSQLSLTSNTDISFNLTNLWKMTLSSCNITEFPYFLSTQQALTALDLSNNRIH 539

Query: 450 GRISSWMWDLGITALYYLDLSNNFLT--------NIEYF-------------PPTNMTQL 488
           G+ S    + G  +L +L+LS NFLT        NI+               PP ++ Q 
Sbjct: 540 GQFSKQKSE-GWKSLQFLNLSGNFLTGLDQHPWQNIDTLDLNFNWLQGQLSVPPPSIRQF 598

Query: 489 ----------------------------NFDSNLTHK----------VLDMRMNNFNGKI 510
                                       N  S L  K          +LD+R NNF+GKI
Sbjct: 599 MVSNNRLSGEIPSFICNLGSIQVLDLSNNGFSGLIPKCLGIMMNWLVILDLRNNNFSGKI 658

Query: 511 SQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQV 570
            + F NS +L  LNL+GN  EGPLP SL NC  L +LD GNN I D FP+WLE LP L++
Sbjct: 659 PEVFGNSGSLVYLNLHGNNFEGPLPPSLGNCSGLRILDFGNNNIRDTFPHWLEALPNLEI 718

Query: 571 LILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVD 630
           LILRSN F G +GD +   PFP  +I+DLSHN FTG +P   + N K++++ + ++   +
Sbjct: 719 LILRSNSFHGEVGDPSVDHPFPSLQILDLSHNHFTGFVPIKLMQNLKSVVYVDKDANLPE 778

Query: 631 YMTPLNSSNYYES-------IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683
           Y+        Y+        I L IKG  +++ +ILTI   +D SSN+F+G IPE +G L
Sbjct: 779 YVGDKLFVGRYQYFLVDAPLISLIIKGWGVELRKILTILTVVDCSSNEFRGEIPEEIGML 838

Query: 684 NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
             L  LN  SHN+LTG IP    NLT +ESLDLSSN LVG IP+QLT L +L+VLNL++N
Sbjct: 839 KSLVVLN-FSHNSLTGRIPLSFANLTNMESLDLSSNKLVGEIPSQLTLLSFLAVLNLTFN 897

Query: 744 QFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFD 803
           Q +G IPQG QFNTF NDSYVGN GLCGFPL + C+  E P+   S    EEE++  WFD
Sbjct: 898 QLKGQIPQGKQFNTFANDSYVGNLGLCGFPLSQKCSSGEPPQLSPSPIPHEEEDSQGWFD 957

Query: 804 WKFAKMGYGSGLVIGLSIGYIVFGTGKPRWL 834
           WKFA MGYG G+V GLS+GYIV  T KP+W+
Sbjct: 958 WKFALMGYGCGMVFGLSMGYIVLATRKPQWI 988

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493511|ref|XP_003617044.1| Receptor-like protein kinase [Medicago truncatula] gi|355518379|gb|AET00003.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 296/813 (36%), Positives = 420/813 (51%), Gaps = 96/813 (11%)

Query: 76   LHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASI 135
            L GNI S+  +  LP++++L+L+FN  N S      +    L  L+LSSS F G IP SI
Sbjct: 237  LQGNISSD--ILSLPNLQRLDLSFNH-NLSGQLPKSNWSTPLRYLDLSSSAFSGEIPYSI 293

Query: 136  -DLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEE 194
              L ++++L  +Y     F     L +              +TQL    +++ +   +  
Sbjct: 294  GQLKSLTQLDLSYC---NFDGIVPLSLWN------------LTQLTYLDLSQNKLNGEIS 338

Query: 195  SFIYLLLHVDDMEIASKS-KDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTM 253
              +  L H+   ++A  +    I  +             G   K+  + +  N   G+  
Sbjct: 339  PLLSNLKHLIHCDLAENNFSGSIPNV------------YGNLIKLEYLALSSNNLTGQVP 386

Query: 254  DVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRR--SITGYVFNFAGGPI-NWKSTLQSTVV 310
                       L  S N  V    I ++ KR   SI    FN   G I +W  +L S + 
Sbjct: 387  SSLFHLPHLSYLYLSSNKLVGPIPI-EITKRSKLSIVDLSFNMLNGTIPHWCYSLPSLLE 445

Query: 311  LSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRL 370
            L  ++     +T  + E      F      Y +   S+N L G  P+S+++L+NL  L L
Sbjct: 446  LGLSDNH---LTGFIGE------FSTYSLQYLD--LSNNNLRGHFPNSIFQLQNLTELIL 494

Query: 371  PSNRLSGTTELYDFAKLKNLKWLFVSNNR-LSLSTKLKVNSSFPNLFGLGLSACNISEFP 429
             S  LSG  + + F+KL  L  L +S+N  L+++T    +S  PNLF L LS+ NI+ FP
Sbjct: 495  SSTNLSGVVDFHQFSKLNKLNSLVLSHNTFLAINTDSSADSILPNLFSLDLSSANINSFP 554

Query: 430  DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA---LYYLDLSNNFLTNIEYFPPTNMT 486
              L  L  LQ  +LS N IHG+I  W     + +   ++ +DLS N L      PP+ + 
Sbjct: 555  KFLAQLPNLQSLDLSNNNIHGKIPKWFHKKLLNSWKDIWSVDLSFNKLQGDLPIPPSGIQ 614

Query: 487  QLNFDSN--------------------LTH-----------------KVLDMRMNNFNGK 509
              +  +N                    L H                  VLDM+MNN  G 
Sbjct: 615  YFSLSNNNFTGYISSTFCNASSLYMLDLAHNNLTGMIPQCLGTLNSLHVLDMQMNNLYGS 674

Query: 510  ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ 569
            I + F        + LNGN+LEGPLP SL NC +LEVLD+G+N + D FP+WLE LPELQ
Sbjct: 675  IPRTFTKGNAFETIKLNGNQLEGPLPQSLANCSYLEVLDLGDNNVEDTFPDWLETLPELQ 734

Query: 570  VLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEV 629
            V+ LRSN   G I  ++T   FP+ RI D+S+N F+G LPT  + NF+ MM+ +++ + +
Sbjct: 735  VISLRSNNLHGAITCSSTKHTFPKLRIFDVSNNNFSGPLPTSCIKNFQGMMNVSDDQIGL 794

Query: 630  DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 689
             YM   +S  Y +S+++T+KG  +++ RILT F TIDLS+N F+G IP+V+G+LN LKGL
Sbjct: 795  QYMG--DSYYYNDSVVVTVKGFFMELTRILTAFTTIDLSNNMFEGEIPQVIGELNSLKGL 852

Query: 690  NNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 749
             N+S+N +TG IP  L +L  +E LDLS N L G IP  LT+L +LSVLNLS N  EG I
Sbjct: 853  -NLSNNGITGSIPQSLSHLRNLEWLDLSCNQLKGEIPVALTNLNFLSVLNLSQNHLEGII 911

Query: 750  PQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKM 809
            P+G QFNTF NDS+ GN+ LCGFPL +SC  +E   P  ST   EEE   S F WK   +
Sbjct: 912  PKGQQFNTFGNDSFEGNTMLCGFPLSKSCK-NEEDRPPHSTSEDEEE---SGFGWKAVAI 967

Query: 810  GYGSGLVIGLSIGY-IVFGTGKPRWLEFYTYGM 841
            GY  G + GL  GY + F TGKP WL  +   M
Sbjct: 968  GYACGAIFGLLFGYNVFFFTGKPEWLARHVEHM 1000

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 314/833 (37%), Positives = 418/833 (50%), Gaps = 128/833 (15%)

Query: 76  LHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASI 135
           LHG  P +   F  P +  L+L  N+ + S     FS+  SL  L LSS NF G +PASI
Sbjct: 229 LHGRFPDHDIHF--PKLEVLDLQGNN-DLSGNFPRFSENNSLMELYLSSKNFSGELPASI 285

Query: 136 DLINVSRLSTNYLPIFAFSDCF--QLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQE 193
              N+  L T Y+    FS      L+  T     +L+E ++  ++          +   
Sbjct: 286 G--NLKSLQTLYISNCEFSGSIPASLENLTQITSLNLDENLFSGKIPNV-------FSNL 336

Query: 194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTM 253
            + I L LH ++      S                   +G    + G+ +  N+  G   
Sbjct: 337 RNLISLHLHGNNFSGQLPSS------------------IGNLTNLQGLNLYDNQLEG--- 375

Query: 254 DVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLST 313
                      +   VNG++   Y+ DL       GY   F G   +W   L S VVL  
Sbjct: 376 ----------VIPSFVNGFLSLSYV-DL-------GYNL-FNGIIPSWLYALPSLVVLYL 416

Query: 314 TEAEYMAITKAVK----EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLR 369
              +        +    E I L++               N+L G IPSS+++L NL  L 
Sbjct: 417 DHNKLTGHIGEFQSDSLELICLKM---------------NKLHGPIPSSIFKLVNLRYLH 461

Query: 370 LPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP 429
           L SN LSG  E  +F KL+NL  L +SNN LS  T    NS  P++  L  S  NIS   
Sbjct: 462 LSSNNLSGVLETSNFGKLRNLTSLDLSNNMLSSITSSNSNSILPSIQRLDFSNNNISGVW 521

Query: 430 DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT-------NIEYFPP 482
                 + LQ+ NLS N I G      W+     LY LDL +N L        N  +F  
Sbjct: 522 SWNMGKNTLQYLNLSYNSISG-FEMLPWE----NLYTLDLHSNLLQGPLPTLPNSTFFFS 576

Query: 483 TNMTQLNFD-SNLTHKVLDMRM------------------------------NNFNGKIS 511
            +  +L+ + S+L  K   MR+                              N F+G I 
Sbjct: 577 VSHNKLSGEISSLICKASSMRIFDLSNNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIP 636

Query: 512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL 571
           Q F+    + NL+ N N+LEGP+P SL+ C  LEVLD+GNN+IND FP+WL  LPELQVL
Sbjct: 637 QTFLKGNAIRNLDFNDNQLEGPVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVL 696

Query: 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631
           +LRSN F G IG +    PF   RIIDL+HN+F G LP  YL + KA+M+ +  ++   Y
Sbjct: 697 VLRSNSFHGHIGRSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMTRKY 756

Query: 632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN 691
           M       Y +SI++TIK ++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+GL N
Sbjct: 757 M---GEEYYQDSIVVTIKRLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGL-N 812

Query: 692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
           +SHNNL G IPS   NL  +ESLDLSSN L+G IP +LTSL +L VLNLS N   G IPQ
Sbjct: 813 LSHNNLAGHIPSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQ 872

Query: 752 GSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGY 811
           G+QF+TF NDSY  NSGLCGFPL + C IDE PE    T    +      FDWK   MGY
Sbjct: 873 GNQFDTFGNDSYNENSGLCGFPLSKKCIIDETPESSKET----DAEFDGGFDWKITLMGY 928

Query: 812 GSGLVIGLSIGYIVFGTGKPRWLEFYTYGMELSCRSQII-TLQACCDLGVLKK 863
           G GL+IGLS+G ++F TGKP+WL   T  +E +   +I  + +  C  G  +K
Sbjct: 929 GCGLIIGLSLGCLIFLTGKPKWL---TTMVEENIHKKITRSKKGTCRRGARRK 978

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/550 (44%), Positives = 314/550 (57%), Gaps = 99/550 (18%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            S N+L G IPSS+++L NL  L L SN LSG  E  +F KL+NL  L++SNN LSL+T 
Sbjct: 440 LSMNELHGPIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTS 499

Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
              N   P                       +++  +LS N+I G    W W++G   L+
Sbjct: 500 SNSNCILP-----------------------KIESIDLSNNKISG---VWSWNMGKDTLW 533

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH----------------------------- 496
           YL+LS N ++  E  P  N+  L+  SNL                               
Sbjct: 534 YLNLSYNSISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLIC 593

Query: 497 -----KVLDMRMNN-------------------------FNGKISQKFVNSCNLTNLNLN 526
                +VLD+  NN                         F+G I Q F+    + NL+ N
Sbjct: 594 KVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFN 653

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
            NRLEG +P SL+ C  LEVL++GNN+IND FP+WL  LPELQVL+LRSN F G IG + 
Sbjct: 654 DNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSK 713

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYE-SII 645
              PF   RIIDL+HN+F G LP  YL + K  M+ + +++   YM      NYYE S++
Sbjct: 714 LKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYM----GGNYYEDSVM 769

Query: 646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL 705
           +TIKG++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+GL N+SHNNLTG IPS  
Sbjct: 770 VTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGL-NLSHNNLTGHIPSSF 828

Query: 706 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVG 765
            NL  +ESLDLSSN L+G IP QLTSL +L VLNLS N   G IP+G+QF+TF NDSY G
Sbjct: 829 GNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNG 888

Query: 766 NSGLCGFPLLESCNIDEAPEPVGSTRFGEEENA--SSWFDWKFAKMGYGSGLVIGLSIGY 823
           NS LCGFPL + C  DE PEP       +EE+A   + FDWKF  +GYG GLV GLS+G 
Sbjct: 889 NSELCGFPLSKKCIADETPEP------SKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGG 942

Query: 824 IVFGTGKPRW 833
           I+F  GKP+W
Sbjct: 943 IIFLIGKPKW 952

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	892
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.531	0.476	0.344	2.3e-87
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.521	0.456	0.360	2.3e-86
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.516	0.588	0.352	5.1e-81
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.549	0.689	0.340	9.2e-81
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.487	0.461	0.358	2.6e-80
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.394	0.393	0.393	3.4e-79
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.526	0.597	0.343	2.5e-77
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.510	0.537	0.345	8.8e-77
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.448	0.417	0.363	3.7e-74
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.511	0.615	0.331	4.7e-74

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 2.3e-87, Sum P(2) = 2.3e-87
 Identities = 175/508 (34%), Positives = 253/508 (49%)

Query:   345 HFSSNQLSG----SIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL 400
             H    +LSG      P  +    NL  + L +N + G    + + +L  L  + +SNN L
Sbjct:   499 HLEYLELSGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLW-RLPELSTVDLSNNSL 557

Query:   401 -SLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL 459
                +  LK  S    +  L LS+ N  + P +      +Q+F  S N   G I   +   
Sbjct:   558 IGFNGSLKALSG-SKIVMLDLSS-NAFQGP-LFMPPRGIQYFLGSYNNFTGYIPPSI--C 612

Query:   460 GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXX 519
             G+     LDLSNN L  +   P     Q+   S+L+  VL++R N+ +G +   F+    
Sbjct:   613 GLANPLILDLSNNNLHGL--IPRCLEAQM---SSLS--VLNLRNNSLDGSLPNIFMNAKV 665

Query:   520 XXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW 579
                              SL  C  LE+L+V +N IND FP WL  LP+LQVL+LRSN F 
Sbjct:   666 LSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFR 725

Query:   580 GPIGDNTTI-VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
             G + +   +   FP  RI D+SHN+F G LP+ Y  N+ A+   + +  E+ Y+      
Sbjct:   726 GTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTAI---SKSETELQYIGDPEDY 782

Query:   639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLT 698
              YY S++L  KG+ ++++RILT +  ID + NK QG IPE V           +S N  T
Sbjct:   783 GYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLN-LSSNAFT 841

Query:   699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTF 758
             G IPS L NLT +ESLD+S N + G IP +L +L  L  +N+S+NQ  G IPQG+QF+  
Sbjct:   842 GHIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQ 901

Query:   759 RNDSYVGNSGLCGFPLLESCNIDEAPEPV------GSTRFGEEENASSWFDWKFAKMGYG 812
                SY GN G+ G  L + C    AP P        S+   EE+   SW     A +G+ 
Sbjct:   902 NCSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSEEDELISWIA---ACLGFA 958

Query:   813 SGLVIGLSIGYIVFGTGKPRWLEFYTYG 840
              G+V GL++GYI+  + K  W    T+G
Sbjct:   959 PGMVFGLTMGYIMT-SHKHEWF-MDTFG 984

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 2.3e-86, Sum P(2) = 2.3e-86
 Identities = 179/496 (36%), Positives = 272/496 (54%)

Query:   356 PSSVYELENLILLRLPSNRLSGTTELYDFA-KLKNLKWLFVSNNRLS-LSTKLKVNSSFP 413
             P  + +  NL +L L +N++ G  ++ D+  ++  L  + +SNN LS     +K +    
Sbjct:   534 PEFIRKGRNLQILDLSNNKIKG--QVPDWLWRMPTLNSVDLSNNSLSGFHVSVKASPE-S 590

Query:   414 NLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNF 473
              L  + LS+ N  + P  L +   L++F+ S N   G+I   +   G+++L  LDLSNN 
Sbjct:   591 QLTSVDLSS-NAFQGPLFLPS-KSLRYFSGSNNNFTGKIPRSI--CGLSSLEILDLSNNN 646

Query:   474 LT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXXXXXX 532
             L  ++ +   T M+ L+ D       LD+R N+ +G + + F+                 
Sbjct:   647 LNGSLPWCLETLMSSLS-D-------LDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEG 698

Query:   533 XXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI-VPF 591
                 SL  C  LEVL+VG+N+IND FP  L  L +LQVL+L SN+F G + +   +   F
Sbjct:   699 KLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGF 758

Query:   592 PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM-TPL---NSSNYYESIILT 647
             P+ +IID+SHN+F G+LP+ Y  N+ AM    +N++E +Y+  P    +S  YY S++L 
Sbjct:   759 PQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLM 818

Query:   648 IKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRN 707
              KG+ +++ER+LTI+  IDLS N+  G IP+ +           +S N  TG IPS L N
Sbjct:   819 SKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILN-MSSNGFTGHIPSSLAN 877

Query:   708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNS 767
             L  +ESLD+S N + G IP +L +L  L+ +N+S+NQ  G IPQG+QF   +  SY GN 
Sbjct:   878 LKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNP 937

Query:   768 GLCGFPLLES-C-NIDEA-PEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYI 824
             GL G P LE+ C +I E+ P         EEE   S F W  A +G+  G+V GL++GYI
Sbjct:   938 GLNG-PSLENVCGHIKESTPTQTEPLETKEEEEEES-FSWIAAGLGFAPGVVFGLAMGYI 995

Query:   825 VFGTGKPRWLEFYTYG 840
             V    K +W    T+G
Sbjct:   996 VVSY-KHQWF-MKTFG 1009

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 172/488 (35%), Positives = 241/488 (49%)

Query:   349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
             N+L GSIP S+ +  NL+LL +  N +SG       +KL +L+    SNN+L    + +V
Sbjct:   304 NKLDGSIPESISKFLNLVLLDVAHNNISGPVPR-SMSKLVSLRIFGFSNNKL----EGEV 358

Query:   409 NSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLD 468
              S    L    LS  + S F  I      +Q  +LS N   G    W+  L    L++LD
Sbjct:   359 PSWLWRLSSTMLSHNSFSSFEKIYSKETMIQVLDLSFNSFRGTFPVWICKL--KGLHFLD 416

Query:   469 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXX 528
             LSNN        P   +   NF  NLT  +L    N F+G +   F              
Sbjct:   417 LSNNLFNGS--IP---LCLRNF--NLTGLILGN--NKFSGTLPDIFANNTNLQSLDVSGN 467

Query:   529 XXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI 588
                     SL+NC  L  ++V +N+I D FP+WL  LP LQVLILRSN F+GP+   +  
Sbjct:   468 QLEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLILRSNDFYGPLYHPSMS 527

Query:   589 VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM---HGNNNSVEVDYMTPLNSSNYYESII 645
             + F   RIID+SHN F+GVLP  +  +++ M+   HG+   +E D     N S  Y S+ 
Sbjct:   528 IGFQGLRIIDISHNGFSGVLPPNFFSSWREMITLVHGSYEYIE-DIQ---NYSLIYRSME 583

Query:   646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLL 705
             +  KG+++  ERI   F  ID S N+  G IPE +           +S N  T DIP + 
Sbjct:   584 MVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLN-LSGNAFTSDIPRVW 642

Query:   706 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVG 765
              NLT++E+LDLS N L G IP  L  L +LS +N S+N+ +GP+P+G+QF   R  S++ 
Sbjct:   643 ENLTKLETLDLSRNKLSGQIPQDLGKLSFLSYMNFSHNRLQGPVPRGTQFQRQRCSSFLD 702

Query:   766 NSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIV 825
             N  L G  L + C     P P         +     F+W  A + YG G+  GL IGYI 
Sbjct:   703 NHRLYG--LEDICEETHVPNPTSQPSEDLLDEEEKMFNWVAAAIAYGPGVFCGLVIGYI- 759

Query:   826 FGTGKPRW 833
             F +    W
Sbjct:   760 FTSHHHEW 767

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 9.2e-81, Sum P(2) = 9.2e-81
 Identities = 183/537 (34%), Positives = 253/537 (47%)

Query:   340 HYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNR 399
             H      S N+  G  PSS+  L +L  L L  N   G         L NL  L++  N 
Sbjct:   194 HLTTLELSFNRFFGQFPSSIGGLSHLTTLNLFVNNFLGQIPS-SIGNLSNLTSLYLCKNN 252

Query:   400 LSLSTKLKVNSSFPNLFGLGLSACNI-SEFPDILRTLHQLQWFNLSKNRIHG--RISSWM 456
              S      + +    L  L LS+ N   E P  L TL  L + NLS N   G  R +   
Sbjct:   253 FSGQIPSFIGN-LSQLTRLDLSSNNFFGEIPGWLWTLPNLFYVNLSYNTFIGFQRPNKPE 311

Query:   457 WDLGITALYYLDLSNNFLTNIEYF------------PPTNMTQL------NFDSNLTHKV 498
               +G    + L  +NNF   I  F               N + L      N  SNL+H  
Sbjct:   312 PSMG----HLLGSNNNFTGKIPSFICELRSLETLDLSDNNFSGLIPRCMGNLKSNLSH-- 365

Query:   499 LDMRMNNFNGKISQKFVXXXXXXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNF 558
             L++R NN +G + +                           +   LEVL+V +N+IND F
Sbjct:   366 LNLRQNNLSGGLPKHIFEILRSLDVGHNQLVGKLPRSLRFFST--LEVLNVESNRINDTF 423

Query:   559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA 618
             P WL  LP+LQVL+LRSN F GPI + +    F + RIID+SHN F G LP+ Y   + A
Sbjct:   424 PFWLTSLPKLQVLVLRSNAFHGPIHEAS----FLKLRIIDISHNHFNGTLPSDYFVKWSA 479

Query:   619 M--MHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI 676
             M  +  + +    +YM    S  Y +S++L  KG++ ++ RILTI+  +D S NKF+G I
Sbjct:   480 MSSLGTDEDRSNANYM---GSVYYQDSMVLMNKGVESELIRILTIYTALDFSGNKFEGEI 536

Query:   677 PEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 736
             P+ +           +S+N  TG IPS +  LT +ESLD+S N L G IP ++ +L +LS
Sbjct:   537 PKSIGLLKELLVLN-LSNNAFTGHIPSSMGKLTALESLDVSQNKLYGEIPQEIGNLSFLS 595

Query:   737 VLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGE-E 795
              +N S+NQ  G +P G QF T    S+  N GL G  L E C     P      +  E E
Sbjct:   596 CMNFSHNQLAGLVPGGQQFLTQPCSSFEDNLGLFGSTLEEDCRDIHTPASHQQYKTPETE 655

Query:   796 ENASSWFDWKFAKMGYGSGLVIGLSIGYI-VFGTGKPRWLEFYTYGMELSCRSQIIT 851
             E       W  A +G+  G+V+GL+IGYI VF   KP W    T+G   +CR +  T
Sbjct:   656 EEDEEVISWIAAAIGFIPGIVLGLTIGYILVFY--KPEWF-IKTFGRN-NCRRRSTT 708

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 2.6e-80, Sum P(2) = 2.6e-80
 Identities = 168/469 (35%), Positives = 238/469 (50%)

Query:   377 GTTELYDFAKLKN-LKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI---- 431
             G T+  +  + ++ L +L VSNN++       +  + PNLF L LS      F       
Sbjct:   479 GITDFPEILRTQHELGFLDVSNNKIKGQVPGWL-WTLPNLFYLNLSNNTFISFESSSKKH 537

Query:   432 -LRTLHQLQWFNL--SKNRIHGRISSWMWDLGITALYYLDLS-NNFLTNIEYFPPTNMTQ 487
              L ++ +    +L  S N   G+I S++   G+ +L  LDLS NN+  +I    P  M +
Sbjct:   538 GLSSVRKPSMIHLFASNNNFTGKIPSFI--CGLRSLNTLDLSENNYNGSI----PRCMEK 591

Query:   488 LNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXXXXXXXXXXSLVNCHHLEVL 547
             L   S L   VL++R NN +G + +                        SL+   +LEVL
Sbjct:   592 LK--STLF--VLNLRQNNLSGGLPKHIFESLRSLDVGHNLLVGKLPR--SLIRFSNLEVL 645

Query:   548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
             +V +N+IND FP WL  L +LQVL+LRSN F GPI + T    FP  RIID+SHN F G 
Sbjct:   646 NVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHEAT----FPELRIIDISHNHFNGT 701

Query:   608 LPTGYLDNFKAMMH-GNNNSVEVD-YMTPLNSSNYYE-SIILTIKGIDIQIERILTIFMT 664
             LPT Y   + AM   G N     + YM    S  YY+ S++L  KG+ +++ RILTI+  
Sbjct:   702 LPTEYFVKWSAMSSLGKNEDQSNEKYM---GSGLYYQDSMVLMNKGLAMELVRILTIYTA 758

Query:   665 IDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH 724
             +D S NKF+G IP+ +           +S+N   G IPS + NLT +ESLD+S N L G 
Sbjct:   759 LDFSGNKFEGEIPKSIGLLKELLVLN-LSNNAFGGHIPSSMGNLTALESLDVSQNKLTGE 817

Query:   725 IPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAP 784
             IP +L  L +L+ +N S+NQ  G +P G+QF      ++  N GL G  L E C     P
Sbjct:   818 IPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTP 877

Query:   785 EPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFGTGKPRW 833
                 +     EE       W  A +G+  G+V GL+IGYI+    KP W
Sbjct:   878 ASQQNETTETEEEDEEEISWIAAAIGFIPGIVFGLTIGYILVSY-KPEW 925

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 3.4e-79, Sum P(3) = 3.4e-79
 Identities = 149/379 (39%), Positives = 199/379 (52%)

Query:   461 ITALYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXX 519
             + +LY LDLS NNF  +I    P  M   N  SNL+   L++R NN +G   +       
Sbjct:   518 LRSLYTLDLSDNNFSGSI----PRCME--NLKSNLSE--LNLRQNNLSGGFPEHIFESLR 569

Query:   520 XXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW 579
                              SL    +LEVL+V +N+IND FP WL  L +LQVL+LRSN F 
Sbjct:   570 SLDVGHNQLVGKLPR--SLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFH 627

Query:   580 GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH-GN-NNSVEVDYMTPLNS 637
             GPI  N  +  FP+ RIID+SHN F G LPT Y   +  M   G   +   V+Y   L S
Sbjct:   628 GPI--NQAL--FPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNY---LGS 680

Query:   638 SNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNL 697
               Y +S++L  KG++ ++ RILTI+  +D S NKF+G IP+ +           +S+N  
Sbjct:   681 GYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLN-LSNNAF 739

Query:   698 TGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNT 757
             TG IPS + NLT +ESLD+S N L G IP ++ +L  LS +N S+NQ  G +P G QF T
Sbjct:   740 TGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLT 799

Query:   758 FRNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFGE---EENASSWFDWKFAKMGYGSG 814
              R  S+ GN GL G  L E C   +   P    +F     EE       W  A +G+G G
Sbjct:   800 QRCSSFEGNLGLFGSSLEEVCR--DIHTPASHQQFETPQTEEEDEDLISWIAAAIGFGPG 857

Query:   815 LVIGLSIGYIVFGTGKPRW 833
             +  GL  GYI+    KP W
Sbjct:   858 IAFGLMFGYILVSY-KPEW 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-77, Sum P(2) = 2.5e-77
 Identities = 172/501 (34%), Positives = 241/501 (48%)

Query:   345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             + + N+  G IP  + E+ +LI+L L  N L G       +KL NL+ L +SNN L    
Sbjct:   287 NLADNKFDGPIPEYISEIHSLIVLDLSHNNLVGPIPT-SISKLVNLQHLSLSNNTL---- 341

Query:   405 KLKVNSSFPNLFGLGLSACNISEF-PDILRTL--HQLQWFNLSKNRIHGRISSWMWDLGI 461
             + +V      L  + LS  + + F       L    +Q  +L  N + G    W+     
Sbjct:   342 EGEVPGCLWGLMTVTLSHNSFNSFGKSSSGALDGESMQELDLGSNSLGGPFPHWICKQRF 401

Query:   462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXX 521
               L YLDLSNN        PP     L  +S    K L +R N+F+G +   FV      
Sbjct:   402 --LKYLDLSNNLFNGS--IPPC----LK-NSTYWLKGLVLRNNSFSGFLPDVFVNASMLL 452

Query:   522 XXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
                            SL+NC  +E+L+VG+N I D FP+WL  LP L+VLILRSN F+G 
Sbjct:   453 SLDVSYNRLEGKLPKSLINCTGMELLNVGSNIIKDTFPSWLVSLPSLRVLILRSNAFYGS 512

Query:   582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM------HGNNNSVEVDYMTPL 635
             +  +     F   R+ID+S N F+G L   Y  N++ M+      +G+N   E  YM   
Sbjct:   513 LYYDHISFGFQHLRLIDISQNGFSGTLSPLYFSNWREMVTSVLEENGSNIGTEDWYMGEK 572

Query:   636 NSS-NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISH 694
                 ++  S+ +  KG++    RI   F  ID S N+F G IPE V           +S 
Sbjct:   573 GPEFSHSNSMTMIYKGVETDFLRIPYFFRAIDFSGNRFFGNIPESVGLLKELRLLN-LSG 631

Query:   695 NNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQ 754
             N+ T +IP  L NLT +E+LDLS N L GHIP  L SL +LS +N S+N  EGP+P G+Q
Sbjct:   632 NSFTSNIPQSLANLTNLETLDLSRNQLSGHIPRDLGSLSFLSTMNFSHNLLEGPVPLGTQ 691

Query:   755 FNTFRNDSYVGNSGLCGFPLLESCNIDEAPE--PVGSTRFGEEENASSWFDWKFAKMGYG 812
             F +    +++ N  L G  L + C    AP   P+ S  F E E      +W  A + YG
Sbjct:   692 FQSQHCSTFMDNLRLYG--LEKICGKAHAPSSTPLESEEFSEPEEQV--INWIAAAIAYG 747

Query:   813 SGLVIGLSIGYIVFGTGKPRW 833
              G+  GL IG+I F   K  W
Sbjct:   748 PGVFCGLVIGHIFFTAHKHEW 768

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 8.8e-77, Sum P(2) = 8.8e-77
 Identities = 165/478 (34%), Positives = 241/478 (50%)

Query:   349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
             N+L G IP S+  L NL  L +  N  +G       +KL NL  L +S N L    + +V
Sbjct:   361 NRLHGPIPESISRLLNLEELDISHNNFTGAIPP-TISKLVNLLHLDLSKNNL----EGEV 415

Query:   409 NSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLD 468
              +    L  + LS  + S F +  +    ++  +L+ N   G I   +  L  ++L +LD
Sbjct:   416 PACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKL--SSLGFLD 473

Query:   469 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXX 528
             LSNN  +      P+ +   NF  ++  K L++  NNF+G +   F              
Sbjct:   474 LSNNLFSGSI---PSCIR--NFSGSI--KELNLGDNNFSGTLPDIFSKATELVSLDVSHN 526

Query:   529 XXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI 588
                     SL+NC  LE+++V +N+I D FP+WLE LP L VL LRSN+F+GP+      
Sbjct:   527 QLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHAS 586

Query:   589 VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVD-YMTPL--NSSNYYESII 645
             + F   RIID+SHN F+G LP  Y  N+K M      + E+D YMT     + +YY  + 
Sbjct:   587 IGFQSLRIIDISHNNFSGTLPPYYFSNWKDM---TTLTEEMDQYMTEFWRYADSYYHEME 643

Query:   646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLL 705
             +  KG+D+  ERI   F  ID S NK  G IPE +           +S N  T  IP  L
Sbjct:   644 MVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLN-LSGNAFTSVIPRFL 702

Query:   706 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVG 765
              NLT++E+LD+S N L G IP  L +L +LS +N S+N  +GP+P+G+QF   +  S++ 
Sbjct:   703 ANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLD 762

Query:   766 NSGLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGY 823
             N GL G  L + C    A  P         E   + F+W  A + YG G++ GL IG+
Sbjct:   763 NPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGH 818

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 155/426 (36%), Positives = 216/426 (50%)

Query:   413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS-N 471
             P L+ + LS   +  F    +    L +   S N   G+I S++   G+ +L  LDLS N
Sbjct:   534 PILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSFI--CGLRSLNTLDLSDN 591

Query:   472 NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXXXXX 531
             NF  +I    P  M  L   S L+  VL++R N+ +G + ++                  
Sbjct:   592 NFNGSI----PRCMGHLK--STLS--VLNLRQNHLSGGLPKQIFEILRSLDVGHNQLVGK 643

Query:   532 XXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF 591
                  S  +   LEVL+V +N+IND FP WL  LP+LQVL+LRSN F GPI + T    F
Sbjct:   644 LPRSLSFFST--LEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHEAT----F 697

Query:   592 PRFRIIDLSHNEFTGVLPTGYLDNFKAMMH-GNNNSVEVD-YMTPLNSSNYYE-SIILTI 648
             P  RIID+SHN F G LPT Y   + AM   G N     + YM    S  YY+ S++L  
Sbjct:   698 PELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYM---GSGLYYQDSMVLMN 754

Query:   649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNL 708
             KG+ +++ RILTI+  +D S N+F+G IP+ +           +S+N  +G +PS + NL
Sbjct:   755 KGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLS-LSNNAFSGHMPSSMGNL 813

Query:   709 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSG 768
             T +ESLD+S N L G IP +L  L +L+ +N S+NQ  G +P G QF T    ++  N G
Sbjct:   814 TALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLG 873

Query:   769 LCGFPLLESCNIDEAPEPVGSTRFGE-EENASSWFDWKFAKMGYGSGLVIGLSIGYIVFG 827
             L G  L E C     P         E EE       W  A +G+G G+  GL  GYI+  
Sbjct:   874 LFGSSLEEVCRDIHTPASHQQFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVS 933

Query:   828 TGKPRW 833
               KP W
Sbjct:   934 Y-KPEW 938

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 161/486 (33%), Positives = 251/486 (51%)

Query:   356 PSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS-LSTKLKVNSSFPN 414
             P  +    +L  L + +N++ G    + ++ L  L+++ +S+N  +       V      
Sbjct:   269 PKFLRNQTSLEYLDISANQIEGQVPEWLWS-LPELRYVNISHNSFNGFEGPADVIQGGRE 327

Query:   415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFL 474
             L  L +S+ NI + P  L  +  + +   S NR  G I   + +L    +  L  +NNF 
Sbjct:   328 LLVLDISS-NIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILVLS-NNNFS 385

Query:   475 TNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVXXXXXXXXXXXXXXXXXXX 534
              +I   P        F+ NL   VL +R NN +G   ++ +                   
Sbjct:   386 GSI---PRC------FE-NLHLYVLHLRNNNLSGIFPEEAISHHLQSFDVGHNLFSGELP 435

Query:   535 XXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRF 594
               SL+NC  +E L+V +N+IND FP+WLE+LP LQ+L+LRSN F+GPI      + F R 
Sbjct:   436 K-SLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRL 494

Query:   595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVD-----Y-MTPLNSSNYYESIILTI 648
             RI D+S N FTGVLP+ Y   +  M    ++ V++D     Y +T ++   Y++S+ L  
Sbjct:   495 RIFDISENRFTGVLPSDYFVGWSVM----SSVVDIDGRIIQYTVTGIDRDFYHKSVALIN 550

Query:   649 KGIDIQIERI-LTIFMTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRN 707
             KG+ +++     TI+ TID+S N+ +G IPE +           +S+N  TG IP  L N
Sbjct:   551 KGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLS-MSNNAFTGHIPPSLSN 609

Query:   708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNS 767
             L+ ++SLDLS N L G IP +L  L +L  +N S+N+ EGPIP+ +Q  T  + S+  N 
Sbjct:   610 LSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENP 669

Query:   768 GLCGFPLLESCNIDEAPEPVGSTRFGEEENASSWFDWKFAKMGYGSGLVIGLSIGYIVFG 827
             GLCG PLL+ C  +E  E     +  ++E     F W  A +GY  G+V GL+IG+I+  
Sbjct:   670 GLCGAPLLKKCGGEE--EATKQEQDEDKEEEDQVFSWIAAAIGYVPGVVCGLTIGHILV- 726

Query:   828 TGKPRW 833
             + K  W
Sbjct:   727 SHKRDW 732

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	892
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-33
pfam07727	246	pfam07727, RVT_2, Reverse transcriptase (RNA-depen	5e-32
cd09272	142	cd09272, RNase_HI_RT_Ty1, Ty1/Copia family of RNas	8e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  153 bits (388), Expect = 4e-38
 Identities = 131/428 (30%), Positives = 199/428 (46%), Gaps = 45/428 (10%)

Query: 349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
           N LSG IP  +  L +L  L L  N L+G         LKNL++LF+  N+LS      +
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 409 NSSFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYL 467
             S   L  L LS  ++S E P+++  L  L+  +L  N   G+I      + +T+L  L
Sbjct: 281 -FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-----VALTSLPRL 334

Query: 468 DL----SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523
            +    SN F   I    P N+ + N   NLT  VLD+  NN  G+I +   +S NL  L
Sbjct: 335 QVLQLWSNKFSGEI----PKNLGKHN---NLT--VLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
            L  N LEG +P SL  C  L  + + +N  +   P+    LP +  L + +N   G I 
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI- 444

Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES 643
            N+     P  +++ L+ N+F G LP    D+F     G+     +D    L+ + +  +
Sbjct: 445 -NSRKWDMPSLQMLSLARNKFFGGLP----DSF-----GSKRLENLD----LSRNQFSGA 490

Query: 644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPS 703
           +   +          L+  M + LS NK  G IP+ +     L  L+ +SHN L+G IP+
Sbjct: 491 VPRKL--------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD-LSHNQLSGQIPA 541

Query: 704 LLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSY 763
               +  +  LDLS N L G IP  L +++ L  +N+S+N   G +P    F      + 
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV 601

Query: 764 VGNSGLCG 771
            GN  LCG
Sbjct: 602 AGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  137 bits (347), Expect = 4e-33
 Identities = 122/432 (28%), Positives = 182/432 (42%), Gaps = 91/432 (21%)

Query: 349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
           N L G IP+S+  L +L  L L SN+L G     +  ++K+LKW+++  N LS       
Sbjct: 174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLS------- 225

Query: 409 NSSFPNLFGLGLSACN---------ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL 459
               P   G GL++ N             P  L  L  LQ+  L +N++ G I   ++ L
Sbjct: 226 -GEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 460 GITALYYLDLSNNFLTNIEYFPPTNMTQLN-------FDSNLTHK------------VLD 500
               L  LDLS+N L+      P  + QL        F +N T K            VL 
Sbjct: 284 --QKLISLDLSDNSLSG---EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 501 MRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPN 560
           +  N F+G+I +      NLT L+L+ N L G +P  L +  +L  L + +N +    P 
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 561 WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM 620
            L     L+ + L+ N F G +    T +P   F  +D+S+N   G + +   D      
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWD------ 450

Query: 621 HGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV 680
                      M  L                             + L+ NKF GG+P+  
Sbjct: 451 -----------MPSLQ---------------------------MLSLARNKFFGGLPDSF 472

Query: 681 GKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 740
           G   L     ++S N  +G +P  L +L+E+  L LS N L G IP +L+S K L  L+L
Sbjct: 473 GSKRLEN--LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 741 SYNQFEGPIPQG 752
           S+NQ  G IP  
Sbjct: 531 SHNQLSGQIPAS 542

Length = 968

>gnl|CDD|219537 pfam07727, RVT_2, Reverse transcriptase (RNA-dependent DNA polymerase)

 Score =  124 bits (315), Expect = 5e-32
 Identities = 48/133 (36%), Positives = 62/133 (46%), Gaps = 43/133 (32%)

Query: 157 FQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKEN------------------WLQ------ 192
            Q+DVKT FL+ +LEEE+YM Q  GF+   K N                  W Q      
Sbjct: 80  HQMDVKTAFLNGELEEEVYMKQPPGFEDPGKPNKVCRLKKSLYGLKQAPRAWYQKLSSFL 139

Query: 193 -------------------EESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLG 233
                                  IYLLL+VDD+ IA  + + I++ K +L+ EFEMKDLG
Sbjct: 140 LKLGFKQSEADPCLFVKKSGGGIIYLLLYVDDILIAGSNDELIDEFKEELSSEFEMKDLG 199

Query: 234 EAKKILGMEICRN 246
           E K  LG+EI R 
Sbjct: 200 ELKYFLGIEIKRT 212

A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. This Pfam entry includes reverse transcriptases not recognised by the pfam00078 model. Length = 246

>gnl|CDD|187696 cd09272, RNase_HI_RT_Ty1, Ty1/Copia family of RNase HI in long-term repeat retroelements

 Score =  117 bits (296), Expect = 8e-31
 Identities = 39/63 (61%), Positives = 50/63 (79%)

Query: 270 NGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAI 329
            GY D+D+ GDLD RRS +GYVF   GGPI+WKS  Q+TV LS+TEAEY+A+ +A KEA+
Sbjct: 1   EGYSDADWAGDLDDRRSTSGYVFFLGGGPISWKSKKQTTVALSSTEAEYIALAEAAKEAL 60

Query: 330 WLQ 332
           WL+
Sbjct: 61  WLR 63

Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as adjunct domains to the reverse transcriptase gene in retroviruses, in long-term repeat (LTR)-bearing and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD) are unvaried across all RNase H domains. Phylogenetic patterns of RNase HI of LTR retroelements is classified into five major families, Ty3/Gypsy, Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate retroviruses. Ty1/Copia family is widely distributed among the genomes of plants, fungi and animals. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 142

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (317), Expect = 2e-29
 Identities = 128/450 (28%), Positives = 206/450 (45%), Gaps = 42/450 (9%)

Query: 330 WLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKN 389
           W  +             S   +SG I S+++ L  +  + L +N+LSG      F    +
Sbjct: 60  WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS 119

Query: 390 LKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRI 448
           L++L +SNN  + S       S PNL  L LS   +S E P+ + +   L+  +L  N +
Sbjct: 120 LRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 449 HGRISSWMWDLGITALYYLDLSNNFLT---------------------NIEYFPPTNMTQ 487
            G+I + + +L  T+L +L L++N L                      N+    P  +  
Sbjct: 177 VGKIPNSLTNL--TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 488 LNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL 547
           L   ++L H  LD+  NN  G I     N  NL  L L  N+L GP+P S+ +   L  L
Sbjct: 235 L---TSLNH--LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
           D+ +N ++   P  +  L  L++L L SN F G I    T    PR +++ L  N+F+G 
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGE 347

Query: 608 LPT--GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMT- 664
           +P   G  +N   ++  + N++  +    L SS     +IL    ++ +I + L    + 
Sbjct: 348 IPKNLGKHNNL-TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 665 --IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLV 722
             + L  N F G +P    KL L+  L +IS+NNL G I S   ++  ++ L L+ N   
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFL-DISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 723 GHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
           G +P    S K L  L+LS NQF G +P+ 
Sbjct: 466 GGLPDSFGS-KRLENLDLSRNQFSGAVPRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (301), Expect = 1e-27
 Identities = 114/412 (27%), Positives = 182/412 (44%), Gaps = 51/412 (12%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S+N LSG IP+ +    +L +L L  N L G         L +L++L +++N+L      
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQL------ 200

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
                             + + P  L  +  L+W  L  N + G I   +   G+T+L +
Sbjct: 201 ------------------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNH 240

Query: 467 LDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
           LDL  N LT     P +  N+  L +        L +  N  +G I     +   L +L+
Sbjct: 241 LDLVYNNLTG--PIPSSLGNLKNLQY--------LFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
           L+ N L G +P  ++   +LE+L + +N      P  L  LP LQVL L SN+F G I  
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDN---FKAMMHGNNNSVEVDYMTPLNSSNYY 641
           N  +       ++DLS N  TG +P G   +   FK ++   +NS+E +    L +    
Sbjct: 351 N--LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF--SNSLEGEIPKSLGACRSL 406

Query: 642 ESIILTIKGIDIQIERILT---IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
             + L       ++    T   +   +D+S+N  QG I      +  L+ L +++ N   
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML-SLARNKFF 465

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           G +P    +   +E+LDLS N   G +P +L SL  L  L LS N+  G IP
Sbjct: 466 GGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.1 bits (239), Expect = 4e-20
 Identities = 85/282 (30%), Positives = 124/282 (43%), Gaps = 22/282 (7%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           H  SN  +G IP ++  L  L +L+L SN+ SG     +  K  NL  L +S N L+   
Sbjct: 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEI 372

Query: 405 KLKVNSSFPNLFGLGLSACNI-SEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
              + SS  NLF L L + ++  E P  L     L+   L  N   G + S    L +  
Sbjct: 373 PEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-- 429

Query: 464 LYYLDLS-NNFLTNIEY----FPPTNMTQL---NFDSNLTH-------KVLDMRMNNFNG 508
           +Y+LD+S NN    I       P   M  L    F   L         + LD+  N F+G
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 509 KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPEL 568
            + +K  +   L  L L+ N+L G +P  L +C  L  LD+ +NQ++   P     +P L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT 610
             L L  N+  G I  N   V       +++SHN   G LP+
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNV--ESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 4e-13
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 15/122 (12%)

Query: 665 IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH 724
           + L +   +G IP  + KL  L+ +N +S N++ G+IP  L ++T +E LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSIN-LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 725 IPTQLTSLKYLSVLNLSYNQFEGPIP--------QGSQFNTFRNDSYVGNSGLCGFPLLE 776
           IP  L  L  L +LNL+ N   G +P          + FN      +  N+GLCG P L 
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIPGLR 535

Query: 777 SC 778
           +C
Sbjct: 536 AC 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 1e-10
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 44  SWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFN 103
           +W   AD C W G+TC   +  V+ +DLS   + G I  +S++F LP+I+ +NL+ N  +
Sbjct: 50  NWNSSADVCLWQGITC-NNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLS 106

Query: 104 YSEISSGFSQLRSLTLLNLSSSNFMGSIP-ASIDLINVSRLSTN------YLPIFAFSDC 156
                  F+   SL  LNLS++NF GSIP  SI  +    LS N         I +FS  
Sbjct: 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166

Query: 157 FQLDVKTTFL 166
             LD+    L
Sbjct: 167 KVLDLGGNVL 176

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 9e-07
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 54  WDGVTC--DTVAGH--VIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISS 109
           W G  C  D+  G   + GL L    L G IP++ S   L H++ +NL+  +     I  
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK--LRHLQSINLS-GNSIRGNIPP 460

Query: 110 GFSQLRSLTLLNLSSSNFMGSIPASI-DLINVSRLSTN 146
               + SL +L+LS ++F GSIP S+  L ++  L+ N
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY-LSVLNLSYNQFEGPI 749
           ++S  N++G I S +  L  +++++LS+N L G IP  + +    L  LNLS N F G I
Sbjct: 75  DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI 134

Query: 750 PQGSQFN 756
           P+GS  N
Sbjct: 135 PRGSIPN 141

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 490 FDSNLTHKVLD-MRMNN--FNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEV 546
           FDS      +D + ++N    G I        +L ++NL+GN + G +P SL +   LEV
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 547 LDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
           LD+  N  N + P  L  L  L++L L  N   G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 41/124 (33%), Positives = 49/124 (39%), Gaps = 37/124 (29%)

Query: 417 GLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLG-ITALYYLDLSNNFL 474
           GLGL    +  F P+ +  L  LQ  NLS N I G I      LG IT+L  LDLS N  
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP---SLGSITSLEVLDLSYNS- 477

Query: 475 TNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL 534
                                          FNG I +      +L  LNLNGN L G +
Sbjct: 478 -------------------------------FNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 535 PLSL 538
           P +L
Sbjct: 507 PAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
           NL +L+L+ NRL      +     +L+VLD+  N +    P     LP L+ L L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 23/216 (10%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           + N+L  +I   + EL NL  L L +N ++    L    K  NLK L +S+N   + +  
Sbjct: 101 NLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLK-SNLKELDLSDN--KIESLP 156

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
               + PNL  L LS  ++S+ P +L  L  L   +LS N+I   +   +  L  +AL  
Sbjct: 157 SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL--SALEE 213

Query: 467 LDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
           LDLSNN +  +        N++ L   +N        ++ +    I     N  NL  L+
Sbjct: 214 LDLSNNSIIELLSSLSNLKNLSGLELSNN--------KLEDLPESIG----NLSNLETLD 261

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPN 560
           L+ N++     L   +  +L  LD+  N +++  P 
Sbjct: 262 LSNNQISSISSLG--SLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 506 FNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEIL 565
           F+    + F++      L L+   L G +P  +    HL+ +++  N I  N P  L  +
Sbjct: 411 FDSTKGKWFIDG-----LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI 465

Query: 566 PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP 609
             L+VL L  N F G I +  ++      RI++L+ N  +G +P
Sbjct: 466 TSLEVLDLSYNSFNGSIPE--SLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 14/55 (25%)

Query: 7  SHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDA-DCCSWDGVTCD 60
           +D   ALL FK        SS + D         + SW   + D CSW GVTCD
Sbjct: 1  LNDDRDALLAFK--------SSLNGD-----PSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 65  HVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSS 124
           H+  ++LS + + GNIP   SL  +  +  L+L++N FN S I     QL SL +LNL+ 
Sbjct: 443 HLQSINLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNG 499

Query: 125 SNFMGSIPASIDLINVSRLSTNY 147
           ++  G +PA++    + R S N+
Sbjct: 500 NSLSGRVPAALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 19/252 (7%)

Query: 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573
            ++     +L             +L+N   L  LD+  N++  N    LE L  L  L L
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDL 123

Query: 574 RSNRFWGPIGDNTTIVPFPRFRI--IDLSHNEF-TGVLPTGYLDNFK-AMMHGNNNSVEV 629
            +N     I D   ++   +  +  +DLS N+  +   P   L N K   +  N+ S   
Sbjct: 124 DNN----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179

Query: 630 DYMTPLNSSNYYESII--LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 687
             ++  N SN     +    I  +  +IE  L+    +DLS+N     +   +  L  L 
Sbjct: 180 KLLS--NLSNLNNLDLSGNKISDLPPEIEL-LSALEELDLSNNSIIE-LLSSLSNLKNLS 235

Query: 688 GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747
           GL  +S+N L  D+P  + NL+ +E+LDLS+N +     + L SL  L  L+LS N    
Sbjct: 236 GLE-LSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSN 291

Query: 748 PIPQGSQFNTFR 759
            +P  +      
Sbjct: 292 ALPLIALLLLLL 303

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 26/160 (16%)

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQL-NFDSNLTHKVLDMRMNNFNGKISQKFV---- 515
              L  LDLS+N         P     L +   + + + L +  NN  G    + +    
Sbjct: 80  GCGLQELDLSDN------ALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGL 132

Query: 516 --NSCNLTNLNLNGNRLEGPL--PLSLVNCHH--LEVLDVGNNQINDN-FPNWLEILPE- 567
                 L  L L  NRLEG     L+     +  L+ L++ NN I D       E L   
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 568 --LQVLILRSNRFWGPIGDNT---TIVPFPRFRIIDLSHN 602
             L+VL L +N      G +    T+       +++L  N
Sbjct: 193 CNLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	892
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.66
PLN03150	623	hypothetical protein; Provisional	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.77
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.79
KOG4341	483	consensus F-box protein containing LRR [General fu	97.77
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
PRK15386	426	type III secretion protein GogB; Provisional	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.49
KOG4341	483	consensus F-box protein containing LRR [General fu	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.27
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.01
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.7
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.79
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.81
KOG4308	478	consensus LRR-containing protein [Function unknown	94.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.0
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.56
KOG4308	478	consensus LRR-containing protein [Function unknown	89.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.57
smart00370	26	LRR Leucine-rich repeats, outliers.	85.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	80.9
smart00370	26	LRR Leucine-rich repeats, outliers.	80.9

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4e-72  Score=701.43  Aligned_cols=582  Identities=28%  Similarity=0.416  Sum_probs=465.8

Q ss_pred             CHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCc
Q 047519            7 SHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSL   86 (892)
Q Consensus         7 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l   86 (892)
                      .++|+.||++||+++.++  .            ..+.+|..+.+||.|+||+|++ .++|+.|+|++++++|.+++  ++
T Consensus        27 ~~~~~~~l~~~~~~~~~~--~------------~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~   89 (968)
T PLN00113         27 HAEELELLLSFKSSINDP--L------------KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AI   89 (968)
T ss_pred             CHHHHHHHHHHHHhCCCC--c------------ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HH
Confidence            568999999999999654  2            3678998788999999999986 47999999999999999887  89


Q ss_pred             cCCCCCCeEecCCCCCCCCCCCCcC-cCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhccc
Q 047519           87 FFLPHIRKLNLAFNDFNYSEISSGF-SQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTF  165 (892)
Q Consensus        87 ~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~  165 (892)
                      ..+++|++|+|++|.+.+. +|..+ ..+++||+|+|++|++++.+|.  +  .+                         
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~--~l-------------------------  139 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--G--SI-------------------------  139 (968)
T ss_pred             hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--c--cc-------------------------
Confidence            9999999999999999876 88665 4999999999999999988874  3  33                         


Q ss_pred             CCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcc
Q 047519          166 LHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEIC  244 (892)
Q Consensus       166 ~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~  244 (892)
                         ++|++|+|++|.+.+..|.. +.+  ++|++|+|++|  .+.+.+|                ..++++++|++|+++
T Consensus       140 ---~~L~~L~Ls~n~~~~~~p~~~~~l--~~L~~L~L~~n--~l~~~~p----------------~~~~~l~~L~~L~L~  196 (968)
T PLN00113        140 ---PNLETLDLSNNMLSGEIPNDIGSF--SSLKVLDLGGN--VLVGKIP----------------NSLTNLTSLEFLTLA  196 (968)
T ss_pred             ---CCCCEEECcCCcccccCChHHhcC--CCCCEEECccC--cccccCC----------------hhhhhCcCCCeeecc
Confidence               34444444444444444433 444  56666666666  6666666                566666777777777


Q ss_pred             cCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceee
Q 047519          245 RNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKA  324 (892)
Q Consensus       245 ~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~  324 (892)
                      +|.+.                     +.+|. .++++++|++|++++|.+.+.+|..++++++|++|+++   +|.+.+.
T Consensus       197 ~n~l~---------------------~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~---~n~l~~~  251 (968)
T PLN00113        197 SNQLV---------------------GQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV---YNNLTGP  251 (968)
T ss_pred             CCCCc---------------------CcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc---Cceeccc
Confidence            76443                     33444 66677777777777777777777777777777777777   7777776


Q ss_pred             cc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCC
Q 047519          325 VK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS  403 (892)
Q Consensus       325 ~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  403 (892)
                      +| .+       +++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|  .+.
T Consensus       252 ~p~~l-------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n--~~~  321 (968)
T PLN00113        252 IPSSL-------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSN--NFT  321 (968)
T ss_pred             cChhH-------hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCC--ccC
Confidence            66 66       677777777777777777777777777777777777777766666 55666666666666666  333


Q ss_pred             ccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCC
Q 047519          404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPT  483 (892)
Q Consensus       404 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~  483 (892)
                      +                      .+|..+..+++|+.|++++|.+.+.+|..+..+  ++|+.|++++|++++..|..+.
T Consensus       322 ~----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~  377 (968)
T PLN00113        322 G----------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH--NNLTVLDLSTNNLTGEIPEGLC  377 (968)
T ss_pred             C----------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC--CCCcEEECCCCeeEeeCChhHh
Confidence            3                      345556666677777777777766666666665  6777777777777666665544


Q ss_pred             CCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc
Q 047519          484 NMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE  563 (892)
Q Consensus       484 ~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  563 (892)
                      .+.        +|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.
T Consensus       378 ~~~--------~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  449 (968)
T PLN00113        378 SSG--------NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW  449 (968)
T ss_pred             CcC--------CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence            443        677888888888888888888899999999999999999999999999999999999999999998888


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccce
Q 047519          564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES  643 (892)
Q Consensus       564 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~  643 (892)
                      .+++|+.|++++|++.+.+|..+   ..++|+.||+++|++++.+|..+ .                             
T Consensus       450 ~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~-----------------------------  496 (968)
T PLN00113        450 DMPSLQMLSLARNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-G-----------------------------  496 (968)
T ss_pred             cCCCCcEEECcCceeeeecCccc---ccccceEEECcCCccCCccChhh-h-----------------------------
Confidence            99999999999999998888764   45889999999999998888543 1                             


Q ss_pred             EEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519          644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG  723 (892)
Q Consensus       644 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  723 (892)
                                    .++.|+.|+|++|++++.+|..++++++|++|+ |++|+++|.+|..|+++++|+.|||++|+++|
T Consensus       497 --------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        497 --------------SLSELMQLKLSENKLSGEIPDELSSCKKLVSLD-LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             --------------hhhccCEEECcCCcceeeCChHHcCccCCCEEE-CCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence                          167789999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 047519          724 HIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       724 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  773 (892)
                      .+|..+..+++|++|++++|+++|.+|..+++.++...++.||+.+||.+
T Consensus       562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.4e-57  Score=564.89  Aligned_cols=515  Identities=27%  Similarity=0.361  Sum_probs=383.9

Q ss_pred             CCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCc
Q 047519          116 SLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEES  195 (892)
Q Consensus       116 ~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~  195 (892)
                      +++.|+|++|.+.|.+|..+.  .+++|++|+|+++.+.+.+|..+.   .++++|++|+|++|.+.+..|. +.+  ++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~---~~l~~L~~L~Ls~n~l~~~~p~-~~l--~~  141 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIF---TTSSSLRYLNLSNNNFTGSIPR-GSI--PN  141 (968)
T ss_pred             cEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHh---ccCCCCCEEECcCCccccccCc-ccc--CC
Confidence            566677777777777777777  666666666666555555554331   1455555555555555443332 223  44


Q ss_pred             ccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecCh
Q 047519          196 FIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDS  275 (892)
Q Consensus       196 L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~  275 (892)
                      |++|+|++|  .+++.+|                .                                             
T Consensus       142 L~~L~Ls~n--~~~~~~p----------------~---------------------------------------------  158 (968)
T PLN00113        142 LETLDLSNN--MLSGEIP----------------N---------------------------------------------  158 (968)
T ss_pred             CCEEECcCC--cccccCC----------------h---------------------------------------------
Confidence            445555544  4444444                3                                             


Q ss_pred             hhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcC
Q 047519          276 DYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGS  354 (892)
Q Consensus       276 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~  354 (892)
                       .++++++|++|++++|.+.+.+|..++++++|++|+++   +|.+.+.+| .+       +++++|++|++++|.+++.
T Consensus       159 -~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~---~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        159 -DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA---SNQLVGQIPREL-------GQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             -HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc---CCCCcCcCChHH-------cCcCCccEEECcCCccCCc
Confidence             34444444444444444444444444555555555555   454444444 44       4555555555555555555


Q ss_pred             CCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCC-Ccchhh
Q 047519          355 IPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNIS-EFPDIL  432 (892)
Q Consensus       355 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~-~lp~~l  432 (892)
                      +|..++++++|++|++++|.+++.+| ..+.++++|++|++++|  .+.+..|... .+++|++|++++|.++ .+|..+
T Consensus       228 ~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence            55555555555555555555554444 44555555555555555  3344444433 4556666666666665 678889


Q ss_pred             hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc
Q 047519          433 RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ  512 (892)
Q Consensus       433 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~  512 (892)
                      ..+++|+.|++++|.+.+.+|..+..+  ++|+.|++++|.+++..|..+..+.        +|+.|++++|++.+.+|.
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~~~--------~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSL--PRLQVLQLWSNKFSGEIPKNLGKHN--------NLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcC--CCCCEEECcCCCCcCcCChHHhCCC--------CCcEEECCCCeeEeeCCh
Confidence            999999999999999999999999888  9999999999999998887776665        899999999999999999


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCC
Q 047519          513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFP  592 (892)
Q Consensus       513 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  592 (892)
                      .+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+  ..++
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~  452 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMP  452 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988876  7899


Q ss_pred             CccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcC
Q 047519          593 RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKF  672 (892)
Q Consensus       593 ~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  672 (892)
                      +|+.|++++|++.+.+|..+ +                                            .++|+.||+++|++
T Consensus       453 ~L~~L~L~~n~~~~~~p~~~-~--------------------------------------------~~~L~~L~ls~n~l  487 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDSF-G--------------------------------------------SKRLENLDLSRNQF  487 (968)
T ss_pred             CCcEEECcCceeeeecCccc-c--------------------------------------------cccceEEECcCCcc
Confidence            99999999999998888532 1                                            45789999999999


Q ss_pred             CCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519          673 QGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG  752 (892)
Q Consensus       673 ~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  752 (892)
                      ++.+|..+.++++|+.|+ |++|++++.+|..++++++|++|+|++|++++.+|..|..+++|+.|++++|+++|.+|..
T Consensus       488 ~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        488 SGAVPRKLGSLSELMQLK-LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             CCccChhhhhhhccCEEE-CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C-CCCcccCCccCCCCCCCCCC
Q 047519          753 S-QFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       753 ~-~~~~~~~~~~~gN~~lc~~~  773 (892)
                      . .+..+....+.+|+..+..|
T Consensus       567 l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        567 LGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             HhcCcccCEEeccCCcceeeCC
Confidence            3 34456666777887665433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-39  Score=329.34  Aligned_cols=384  Identities=22%  Similarity=0.256  Sum_probs=232.8

Q ss_pred             hhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCC
Q 047519          277 YIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSI  355 (892)
Q Consensus       277 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~  355 (892)
                      .++++.+|..+++.+|++....|..+. ++.|++|+..   .|.+. .+| .+       +.+.+|+.|++..|++. ..
T Consensus       155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~---~N~L~-tlP~~l-------g~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  155 DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN---SNLLE-TLPPEL-------GGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc---hhhhh-cCChhh-------cchhhhHHHHhhhcccc-cC
Confidence            333444444444444444432222222 4455555544   44432 333 55       55555555555566655 44


Q ss_pred             CccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhC
Q 047519          356 PSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRT  434 (892)
Q Consensus       356 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~  434 (892)
                      | +|..+..|++|+++.|.|+ .+|.+...+++++..||+.+|++  . ..|... .+.+|++||+++|.++.+|..+++
T Consensus       222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--k-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgn  296 (565)
T KOG0472|consen  222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--K-EVPDEICLLRSLERLDLSNNDISSLPYSLGN  296 (565)
T ss_pred             C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--c-cCchHHHHhhhhhhhcccCCccccCCccccc
Confidence            4 5666666666666666665 55545555666666666666633  2 233333 556666666666777777777888


Q ss_pred             CCCccEEEccCCCCCCCCchhhhhhCC-CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccc
Q 047519          435 LHQLQWFNLSKNRIHGRISSWMWDLGI-TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK  513 (892)
Q Consensus       435 l~~L~~L~Ls~n~l~~~~~~~~~~l~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~  513 (892)
                      + .|+.|-+.+|.+.. +-..+-..+. .-|++|.=   .++...+..-..-         .-..-+    ...+..|. 
T Consensus       297 l-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~~dglS~se~~---------~e~~~t----~~~~~~~~-  357 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIKDDGLSQSEGG---------TETAMT----LPSESFPD-  357 (565)
T ss_pred             c-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhccCCCCCCccc---------ccccCC----CCCCcccc-
Confidence            7 78888888887652 1111111100 01111110   1110000000000         000000    00011111 


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccccCCCC---CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcC
Q 047519          514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHH---LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP  590 (892)
Q Consensus       514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  590 (892)
                      ...+.+.+.|++++-+++ .+|........   .+..+++.|++.. +|..+..+..+.+.-+..|+..+.+|..+  +.
T Consensus       358 ~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l--~~  433 (565)
T KOG0472|consen  358 IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLEL--SQ  433 (565)
T ss_pred             hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHH--Hh
Confidence            223456777888888887 45554333333   6778888888866 67766666665554444444446666666  77


Q ss_pred             CCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCC
Q 047519          591 FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSN  670 (892)
Q Consensus       591 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  670 (892)
                      +++|..|+|++|.+. .+|.++++                                            +..|+.||+|.|
T Consensus       434 l~kLt~L~L~NN~Ln-~LP~e~~~--------------------------------------------lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  434 LQKLTFLDLSNNLLN-DLPEEMGS--------------------------------------------LVRLQTLNLSFN  468 (565)
T ss_pred             hhcceeeecccchhh-hcchhhhh--------------------------------------------hhhhheeccccc
Confidence            888888888888876 66765422                                            455889999999


Q ss_pred             cCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519          671 KFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       671 ~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      +|. .+|..+..+..|+.+- .++|++....|+.+.+|.+|..|||.+|.+. .||+.+++|++|++|++.+|+|.  .|
T Consensus       469 rFr-~lP~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~P  543 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QP  543 (565)
T ss_pred             ccc-cchHHHhhHHHHHHHH-hccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CC
Confidence            998 8999999999998886 7889999777777999999999999999998 89999999999999999999998  55


Q ss_pred             C
Q 047519          751 Q  751 (892)
Q Consensus       751 ~  751 (892)
                      .
T Consensus       544 r  544 (565)
T KOG0472|consen  544 R  544 (565)
T ss_pred             H
Confidence            3

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-36  Score=317.18  Aligned_cols=367  Identities=23%  Similarity=0.224  Sum_probs=203.2

Q ss_pred             CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEc
Q 047519          342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGL  420 (892)
Q Consensus       342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L  420 (892)
                      +.|++++|++...-+..|.++++|+++++.+|.++ .+| .......+|+.|+|.+|  .+........ .++.|+.|||
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP-~f~~~sghl~~L~L~~N--~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIP-RFGHESGHLEKLDLRHN--LISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcc-cccccccceeEEeeecc--ccccccHHHHHhHhhhhhhhh
Confidence            34555555555444455555555555555555554 444 22222333555555555  2222222222 4455555555


Q ss_pred             cCCCCCCcch-hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEE
Q 047519          421 SACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVL  499 (892)
Q Consensus       421 ~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L  499 (892)
                      +.|.|+++|. .|..-.++++|+|++|+|+..-...|..+  .+|..|.|+.|+++..++..|.+|.        .|+.|
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l--nsL~tlkLsrNrittLp~r~Fk~L~--------~L~~L  226 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL--NSLLTLKLSRNRITTLPQRSFKRLP--------KLESL  226 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeecccccccccccccccc--chheeeecccCcccccCHHHhhhcc--------hhhhh
Confidence            5555554442 33333455555555555554444555544  4555555555555555555555554        55555


Q ss_pred             ECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCC
Q 047519          500 DMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW  579 (892)
Q Consensus       500 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  579 (892)
                      +|..|.|.-.---.|.++++|+.|.+..|.+...-...|..|.++++|+|+.|++...-..|+.++..|+.|+|++|.|.
T Consensus       227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence            55555554332344556666666666666665444455666666666666666666555556666666666666666665


Q ss_pred             CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhh
Q 047519          580 GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL  659 (892)
Q Consensus       580 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  659 (892)
                      ..-+...  ...++|++|||++|+|+ .++++.+..+..|..++++.|++.++.                   ...+..+
T Consensus       307 rih~d~W--sftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~-------------------e~af~~l  364 (873)
T KOG4194|consen  307 RIHIDSW--SFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA-------------------EGAFVGL  364 (873)
T ss_pred             eeecchh--hhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH-------------------hhHHHHh
Confidence            5444443  44556666666666666 333333444444444444444332221                   1123346


Q ss_pred             hhheeeecCCCcCCCCChh---hhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCC
Q 047519          660 TIFMTIDLSSNKFQGGIPE---VVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS  736 (892)
Q Consensus       660 ~~L~~LdLs~N~l~~~~p~---~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  736 (892)
                      ++|++|||++|.|+..|.+   .|.+++.|+.|. +.+|+|....-.+|.++.+||.|||.+|.|..+-|.+|..+ .|+
T Consensus       365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~-l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk  442 (873)
T KOG4194|consen  365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR-LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK  442 (873)
T ss_pred             hhhhhhcCcCCeEEEEEecchhhhccchhhhhee-ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence            7777777777777655543   356677777776 77777775555677777777777777777777777777777 677


Q ss_pred             EEECCCCcCc
Q 047519          737 VLNLSYNQFE  746 (892)
Q Consensus       737 ~L~ls~N~l~  746 (892)
                      .|-+..-.|-
T Consensus       443 ~Lv~nSssfl  452 (873)
T KOG4194|consen  443 ELVMNSSSFL  452 (873)
T ss_pred             hhhhcccceE
Confidence            7666554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-36  Score=316.15  Aligned_cols=378  Identities=19%  Similarity=0.204  Sum_probs=313.8

Q ss_pred             cceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCC-CCCcCEEEc
Q 047519          268 SVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRG-RRHYAEPHF  346 (892)
Q Consensus       268 ~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~-l~~L~~L~L  346 (892)
                      .+.|.+|.       .-+.|++++|.+...-+..|.++++|+.+++.   +|.++ .+|.+       +. ..+|+.|+|
T Consensus        71 ~l~g~lp~-------~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~---~N~Lt-~IP~f-------~~~sghl~~L~L  132 (873)
T KOG4194|consen   71 RLKGFLPS-------QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLN---KNELT-RIPRF-------GHESGHLEKLDL  132 (873)
T ss_pred             ccCCcCcc-------ceeeeeccccccccCcHHHHhcCCcceeeeec---cchhh-hcccc-------cccccceeEEee
Confidence            44555554       45789999999998888889999999999998   88875 77855       44 455999999


Q ss_pred             cCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCC
Q 047519          347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNI  425 (892)
Q Consensus       347 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l  425 (892)
                      .+|.|+..-.+++..++.|+.|||+.|.|+ .++...|..-.++++|+|++|+|  .......+ .+.+|..|.|+.|.+
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~I--t~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRI--TTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccc--cccccccccccchheeeecccCcc
Confidence            999999888888999999999999999998 67767888888999999999954  33333444 777999999999999


Q ss_pred             CCcch-hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCC
Q 047519          426 SEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN  504 (892)
Q Consensus       426 ~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n  504 (892)
                      +.+|. .|..+++|+.|+|..|+|.-.--..|..+  ++|+.|.+..|.+.....+.|-.+.        ++++|+|+.|
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL--~Sl~nlklqrN~I~kL~DG~Fy~l~--------kme~l~L~~N  279 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL--PSLQNLKLQRNDISKLDDGAFYGLE--------KMEHLNLETN  279 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccceeeehhhhhcCc--hhhhhhhhhhcCcccccCcceeeec--------ccceeecccc
Confidence            98885 67779999999999999864334445555  9999999999998887777766665        8899999999


Q ss_pred             ccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCC
Q 047519          505 NFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD  584 (892)
Q Consensus       505 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~  584 (892)
                      ++...-..++.++++|+.|++++|.|...-++.+..+++|++|+|++|+|+...+..|..+..|++|+|++|++...-..
T Consensus       280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~  359 (873)
T KOG4194|consen  280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG  359 (873)
T ss_pred             hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence            99887778888999999999999999988888899999999999999999998888899999999999999998654444


Q ss_pred             CCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhhee
Q 047519          585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMT  664 (892)
Q Consensus       585 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  664 (892)
                      .+  ..+++|++|||++|.+++.+-+..                                         ..+..+++|+.
T Consensus       360 af--~~lssL~~LdLr~N~ls~~IEDaa-----------------------------------------~~f~gl~~Lrk  396 (873)
T KOG4194|consen  360 AF--VGLSSLHKLDLRSNELSWCIEDAA-----------------------------------------VAFNGLPSLRK  396 (873)
T ss_pred             HH--HHhhhhhhhcCcCCeEEEEEecch-----------------------------------------hhhccchhhhh
Confidence            33  778899999999999986665321                                         11223889999


Q ss_pred             eecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcC
Q 047519          665 IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML  721 (892)
Q Consensus       665 LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  721 (892)
                      |++.+|+|....-..|.++..|+.|| |.+|.|...-|.+|..+ .|+.|.++.-.+
T Consensus       397 L~l~gNqlk~I~krAfsgl~~LE~Ld-L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  397 LRLTGNQLKSIPKRAFSGLEALEHLD-LGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             eeecCceeeecchhhhccCcccceec-CCCCcceeecccccccc-hhhhhhhcccce
Confidence            99999999966667899999999999 99999999999999999 899887765433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.2e-38  Score=317.93  Aligned_cols=450  Identities=19%  Similarity=0.164  Sum_probs=311.7

Q ss_pred             EEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCce
Q 047519           66 VIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLST  145 (892)
Q Consensus        66 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~  145 (892)
                      ...+.+++|.+. .+.+  .+.++..|.+|++++|++..  +|++++.+..+..|+.|+|.+. .+|+.++  .+.+|+.
T Consensus        47 l~~lils~N~l~-~l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~--s~~~l~~  118 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIG--SLISLVK  118 (565)
T ss_pred             hhhhhhccCchh-hccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHh--hhhhhhh
Confidence            456777888776 3444  68888999999999999877  8889999999999999999887 8898998  8888998


Q ss_pred             ecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccc
Q 047519          146 NYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQ  225 (892)
Q Consensus       146 L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~  225 (892)
                      |+.+++. ...+|++++    .+..|+.|+..+|++....++...+  .+|..+++.+|  ++....|            
T Consensus       119 l~~s~n~-~~el~~~i~----~~~~l~dl~~~~N~i~slp~~~~~~--~~l~~l~~~~n--~l~~l~~------------  177 (565)
T KOG0472|consen  119 LDCSSNE-LKELPDSIG----RLLDLEDLDATNNQISSLPEDMVNL--SKLSKLDLEGN--KLKALPE------------  177 (565)
T ss_pred             hhccccc-eeecCchHH----HHhhhhhhhccccccccCchHHHHH--HHHHHhhcccc--chhhCCH------------
Confidence            8888876 566777777    8888888888888877665555666  77777777777  6655444            


Q ss_pred             cccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCC
Q 047519          226 EFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTL  305 (892)
Q Consensus       226 ~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  305 (892)
                           ..-.++.|++||...|-                      -+.+|+ .++.+.+|+-|++..|++. .+| .|..+
T Consensus       178 -----~~i~m~~L~~ld~~~N~----------------------L~tlP~-~lg~l~~L~~LyL~~Nki~-~lP-ef~gc  227 (565)
T KOG0472|consen  178 -----NHIAMKRLKHLDCNSNL----------------------LETLPP-ELGGLESLELLYLRRNKIR-FLP-EFPGC  227 (565)
T ss_pred             -----HHHHHHHHHhcccchhh----------------------hhcCCh-hhcchhhhHHHHhhhcccc-cCC-CCCcc
Confidence                 22236677777766653                      334444 5555555555555555554 233 45555


Q ss_pred             CCCcEEecCccccccceeecc--chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhh
Q 047519          306 QSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYD  383 (892)
Q Consensus       306 ~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~  383 (892)
                      ..|+++.++   .|++. .+|  ..       .++.+|..||+..|+++ ..|+.+.-+.+|++||+++|.|++ .| ..
T Consensus       228 s~L~Elh~g---~N~i~-~lpae~~-------~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp-~s  293 (565)
T KOG0472|consen  228 SLLKELHVG---ENQIE-MLPAEHL-------KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LP-YS  293 (565)
T ss_pred             HHHHHHHhc---ccHHH-hhHHHHh-------cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CC-cc
Confidence            555555555   44443 333  33       35555555555555555 455555555555555555555552 33 34


Q ss_pred             cCCCCCCCEEEcccCCCCC-----------------------------------Ccc-----ccCCCCCCCccEEEccCC
Q 047519          384 FAKLKNLKWLFVSNNRLSL-----------------------------------STK-----LKVNSSFPNLFGLGLSAC  423 (892)
Q Consensus       384 ~~~l~~L~~L~Ls~n~l~~-----------------------------------~~~-----~~~~~~l~~L~~L~L~~n  423 (892)
                      ++++ +|+.|-+.+|++..                                   .+.     .+......+.+.|+++.-
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence            5555 55555555554310                                   000     011113456788888888


Q ss_pred             CCCCcchhhhCCCC---ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEE
Q 047519          424 NISEFPDILRTLHQ---LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLD  500 (892)
Q Consensus       424 ~l~~lp~~l~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~  500 (892)
                      +++.+|+.......   .+..+++.|++. .+|..+..+  ..+.+.-+..|+..+.+|..+..++        +|..|+
T Consensus       373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~l--kelvT~l~lsnn~isfv~~~l~~l~--------kLt~L~  441 (565)
T KOG0472|consen  373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVEL--KELVTDLVLSNNKISFVPLELSQLQ--------KLTFLD  441 (565)
T ss_pred             ccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHH--HHHHHHHHhhcCccccchHHHHhhh--------cceeee
Confidence            88888875544444   778888888887 677666655  4444433344444455555555555        888899


Q ss_pred             CCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCC
Q 047519          501 MRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG  580 (892)
Q Consensus       501 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  580 (892)
                      +++|.+. .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.++|++....|..+.+|.+|.+|||.+|.+. 
T Consensus       442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-  518 (565)
T KOG0472|consen  442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-  518 (565)
T ss_pred             cccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-
Confidence            9988776 67888888889999999999988 78888888888888888889998877777999999999999999985 


Q ss_pred             CCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          581 PIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       581 ~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                      .+|..+  +++++|++|++++|.|.
T Consensus       519 ~IPp~L--gnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 QIPPIL--GNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hCChhh--ccccceeEEEecCCccC
Confidence            556666  89999999999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=330.42  Aligned_cols=469  Identities=23%  Similarity=0.247  Sum_probs=242.1

Q ss_pred             ccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhccc
Q 047519           86 LFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTF  165 (892)
Q Consensus        86 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~  165 (892)
                      +..-.++..|+++.|.+-..+ -+++.+..+|+.||+|+|.+. ..|..|.  .+.+|+.|+++.|. ...+|..+.   
T Consensus        17 i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it--~l~~L~~ln~s~n~-i~~vp~s~~---   88 (1081)
T KOG0618|consen   17 ILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQIT--LLSHLRQLNLSRNY-IRSVPSSCS---   88 (1081)
T ss_pred             hccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhh--hHHHHhhcccchhh-HhhCchhhh---
Confidence            333344555666655554421 133444444666666655543 4555555  55555555554444 333343333   


Q ss_pred             CCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEccc
Q 047519          166 LHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICR  245 (892)
Q Consensus       166 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~  245 (892)
                       ++                         .+|+++.|..|  .+ ...|                ..+..+++|++|+++.
T Consensus        89 -~~-------------------------~~l~~lnL~~n--~l-~~lP----------------~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   89 -NM-------------------------RNLQYLNLKNN--RL-QSLP----------------ASISELKNLQYLDLSF  123 (1081)
T ss_pred             -hh-------------------------hcchhheeccc--hh-hcCc----------------hhHHhhhcccccccch
Confidence             33                         45555555554  22 3344                5555666666666666


Q ss_pred             CCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeec
Q 047519          246 NRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAV  325 (892)
Q Consensus       246 n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~  325 (892)
                      |.+.                      .+|. .+..+..++.+..++|.....    ++... ++.+++.   .|.+.+.+
T Consensus       124 N~f~----------------------~~Pl-~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~---~n~l~~~~  172 (1081)
T KOG0618|consen  124 NHFG----------------------PIPL-VIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLR---LNVLGGSF  172 (1081)
T ss_pred             hccC----------------------CCch-hHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhh---hhhcccch
Confidence            6443                      2233 444444445555555411111    11111 4455555   55555555


Q ss_pred             c-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCc
Q 047519          326 K-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST  404 (892)
Q Consensus       326 p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  404 (892)
                      + .+       ..++.  .|+|.+|.+.   -..+..+.+|+.|....|++... .    -..++|+.|+.++|.+.   
T Consensus       173 ~~~i-------~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-~----~~g~~l~~L~a~~n~l~---  232 (1081)
T KOG0618|consen  173 LIDI-------YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-E----ISGPSLTALYADHNPLT---  232 (1081)
T ss_pred             hcch-------hhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-E----ecCcchheeeeccCcce---
Confidence            4 34       44444  5666666665   23455666777777777776522 1    23467777777777432   


Q ss_pred             cccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCC
Q 047519          405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTN  484 (892)
Q Consensus       405 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~  484 (892)
                      .........+|++++++.|+++.+|+|++.+.+|+.+++.+|.++ .+|..+...  .+|+.|.+..|.+..++|. ...
T Consensus       233 ~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~--~~L~~l~~~~nel~yip~~-le~  308 (1081)
T KOG0618|consen  233 TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRI--TSLVSLSAAYNELEYIPPF-LEG  308 (1081)
T ss_pred             eeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhh--hhHHHHHhhhhhhhhCCCc-ccc
Confidence            111112456788888888888888888888888888888888885 667766666  7777777777776655432 122


Q ss_pred             CCeeecCCCCcccEEECCCCccCccccccccCCCC-CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc
Q 047519          485 MTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN-LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE  563 (892)
Q Consensus       485 l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~  563 (892)
                      ++        .|++|+|..|++....+..+..... |..|+.+.|++. ..| ..+                      =.
T Consensus       309 ~~--------sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp-~~~----------------------e~  356 (1081)
T KOG0618|consen  309 LK--------SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLP-SYE----------------------EN  356 (1081)
T ss_pred             cc--------eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccc-ccc----------------------ch
Confidence            22        4555555555554322222222222 444444444444 222 110                      01


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccce
Q 047519          564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES  643 (892)
Q Consensus       564 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~  643 (892)
                      .++.|+.|++.+|.++...-+.+  .++..|++|+|++|++. .+|+.++.+                            
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p~l--~~~~hLKVLhLsyNrL~-~fpas~~~k----------------------------  405 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFPVL--VNFKHLKVLHLSYNRLN-SFPASKLRK----------------------------  405 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchhhh--ccccceeeeeecccccc-cCCHHHHhc----------------------------
Confidence            23445555555555554443333  45555555566655554 445443322                            


Q ss_pred             EEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519          644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG  723 (892)
Q Consensus       644 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  723 (892)
                                     +..|+.|+||+|+++ .+|..+.++..|++|. ..+|+|. ..| .+.++++|+.+|+|.|+|+.
T Consensus       406 ---------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~-ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  406 ---------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLR-AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ---------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHh-hcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence                           334445555555555 4555555555555554 5555555 444 45555555555555555543


Q ss_pred             CCccccCCCCCCCEEECCCCc
Q 047519          724 HIPTQLTSLKYLSVLNLSYNQ  744 (892)
Q Consensus       724 ~ip~~l~~l~~L~~L~ls~N~  744 (892)
                      ..-..-..-++|++||+++|.
T Consensus       467 ~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  467 VTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhCCCcccceeeccCCc
Confidence            221111112455555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-33  Score=299.41  Aligned_cols=343  Identities=26%  Similarity=0.324  Sum_probs=247.2

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL  415 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  415 (892)
                      ..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+. ..++.++.|+.+++.+|++...|..+..+.+..|
T Consensus        29 ~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL  105 (1255)
T KOG0444|consen   29 EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL  105 (1255)
T ss_pred             HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhh-hhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence            44555555555555555 67888888888888888888876 344 5677888888888888877777766666688888


Q ss_pred             cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519          416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT  495 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~  495 (892)
                      +.|+|+.|+++++|..+..-+++-.|+||+|+|.......+.++  +.|-.||||+|++...+|. ...+.        .
T Consensus       106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL--tDLLfLDLS~NrLe~LPPQ-~RRL~--------~  174 (1255)
T KOG0444|consen  106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL--TDLLFLDLSNNRLEMLPPQ-IRRLS--------M  174 (1255)
T ss_pred             eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh--HhHhhhccccchhhhcCHH-HHHHh--------h
Confidence            88888888888888888888888889999998885444556666  8888889999888876652 23333        6


Q ss_pred             ccEEECCCCccCccccccccCCCCCCEEEccCCCCC-CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLE-GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      |++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.. +|+.+-++++|+.|+|+
T Consensus       175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLS  253 (1255)
T ss_pred             hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccC
Confidence            778888888776544445566778888888886543 4678889999999999999999876 78889999999999999


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|+++..-.   ....+.+|++|++|.|+++ .+|.. ...                                       
T Consensus       254 ~N~iteL~~---~~~~W~~lEtLNlSrNQLt-~LP~a-vcK---------------------------------------  289 (1255)
T KOG0444|consen  254 GNKITELNM---TEGEWENLETLNLSRNQLT-VLPDA-VCK---------------------------------------  289 (1255)
T ss_pred             cCceeeeec---cHHHHhhhhhhccccchhc-cchHH-Hhh---------------------------------------
Confidence            999865432   2256788999999999998 77755 333                                       


Q ss_pred             HHHhhhhheeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK  733 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  733 (892)
                          ++.|+.|.+.+|+++ ..||..+|.|..|+++. .++|++. ..|+.+..+..|+.|.|++|++. ..|+.+.-++
T Consensus       290 ----L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~-aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~  362 (1255)
T KOG0444|consen  290 ----LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH-AANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP  362 (1255)
T ss_pred             ----hHHHHHHHhccCcccccCCccchhhhhhhHHHH-hhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence                444555555555554 24566666666666665 6666555 56666666666666666666665 5566666666


Q ss_pred             CCCEEECCCCc
Q 047519          734 YLSVLNLSYNQ  744 (892)
Q Consensus       734 ~L~~L~ls~N~  744 (892)
                      .|++||+..|+
T Consensus       363 ~l~vLDlreNp  373 (1255)
T KOG0444|consen  363 DLKVLDLRENP  373 (1255)
T ss_pred             CcceeeccCCc
Confidence            66666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-33  Score=313.92  Aligned_cols=403  Identities=22%  Similarity=0.267  Sum_probs=291.3

Q ss_pred             cccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCc
Q 047519          230 KDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTV  309 (892)
Q Consensus       230 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  309 (892)
                      ....++.+|++|.|.+|.                      ...+|. .+..+.+|+.|+++.|.+. .+|..+..++.++
T Consensus        85 ~s~~~~~~l~~lnL~~n~----------------------l~~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~  140 (1081)
T KOG0618|consen   85 SSCSNMRNLQYLNLKNNR----------------------LQSLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEE  140 (1081)
T ss_pred             hhhhhhhcchhheeccch----------------------hhcCch-hHHhhhcccccccchhccC-CCchhHHhhhHHH
Confidence            445556666666666553                      345666 8888889999999998886 6777788888888


Q ss_pred             EEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCC
Q 047519          310 VLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKN  389 (892)
Q Consensus       310 ~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  389 (892)
                      .+..+   +|.....+          +... ++.+++..|.+.+.++.++..++.  .|+|.+|.+. .   ..+..+.+
T Consensus       141 ~~~~s---~N~~~~~l----------g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~  200 (1081)
T KOG0618|consen  141 ELAAS---NNEKIQRL----------GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLAN  200 (1081)
T ss_pred             HHhhh---cchhhhhh----------cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccc
Confidence            88888   77222221          2222 788888888888888888877777  7899999886 3   34677888


Q ss_pred             CCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEc
Q 047519          390 LKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDL  469 (892)
Q Consensus       390 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~L  469 (892)
                      |+.|....|++....     ..-++|+.|+.+.|.++.+-. -..-.+|++++++.|+++ .+|+|+..+  .+|+.++.
T Consensus       201 l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l~-~lp~wi~~~--~nle~l~~  271 (1081)
T KOG0618|consen  201 LEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNLS-NLPEWIGAC--ANLEALNA  271 (1081)
T ss_pred             hhhhhhhhcccceEE-----ecCcchheeeeccCcceeecc-ccccccceeeecchhhhh-cchHHHHhc--ccceEecc
Confidence            888888888432111     135778888888887773321 122356788888888887 455777776  77777666


Q ss_pred             cCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc
Q 047519          470 SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV  549 (892)
Q Consensus       470 s~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  549 (892)
                      .+|+++                                 .+|..+....+|+.|.+..|.+. -+|......+.|++|||
T Consensus       272 n~N~l~---------------------------------~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  272 NHNRLV---------------------------------ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             cchhHH---------------------------------hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            666653                                 34455556667777888888877 56666777888888888


Q ss_pred             cCCCCCCCcchhccCCCC-CCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCcc
Q 047519          550 GNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVE  628 (892)
Q Consensus       550 ~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~  628 (892)
                      ..|+|....+..+..+.. |+.|+.+.|++....  ...-..++.|+.|.+.+|.++...-..+                
T Consensus       318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Ltd~c~p~l----------------  379 (1081)
T KOG0618|consen  318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLTDSCFPVL----------------  379 (1081)
T ss_pred             hhccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCcccccchhhh----------------
Confidence            888887644433444433 777888888774332  1222456778999999999985432111                


Q ss_pred             ccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCC
Q 047519          629 VDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNL  708 (892)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l  708 (892)
                                                  ...+.|+.|+|++|+|.......+.++..|+.|+ ||+|+++ .+|.++.++
T Consensus       380 ----------------------------~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~-LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  380 ----------------------------VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN-LSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             ----------------------------ccccceeeeeecccccccCCHHHHhchHHhHHHh-cccchhh-hhhHHHHhh
Confidence                                        1267899999999999944445678999999999 9999999 889999999


Q ss_pred             CCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCccc-CCCCCCCCcccCCccCCCCCC
Q 047519          709 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP-IPQGSQFNTFRNDSYVGNSGL  769 (892)
Q Consensus       709 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~-iP~~~~~~~~~~~~~~gN~~l  769 (892)
                      ..|++|...+|++. ..| .+..++.|+.+|+|.|+|+-. +|......+++..++.||.++
T Consensus       430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            99999999999998 778 899999999999999999753 444434467888889999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.4e-32  Score=290.30  Aligned_cols=370  Identities=24%  Similarity=0.290  Sum_probs=310.6

Q ss_pred             CCCCcCEEEccCCcCC-cCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519          337 GRRHYAEPHFSSNQLS-GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL  415 (892)
Q Consensus       337 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  415 (892)
                      -++-.+-+|+++|.++ +.+|.....+++++.|.|....+. .+| +.++.+.+|++|.+++|  .+.........+|.|
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN--~L~~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHN--QLISVHGELSDLPRL   80 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhh--hhHhhhhhhccchhh
Confidence            3455677899999998 579999999999999999999997 788 88999999999999999  444444444478999


Q ss_pred             cEEEccCCCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519          416 FGLGLSACNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN  493 (892)
Q Consensus       416 ~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~  493 (892)
                      +.+.+..|++.  .+|..+..+..|+.||||+|++. ..|..+...  .++-.|+||+|+|..++...+.+++       
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A--Kn~iVLNLS~N~IetIPn~lfinLt-------  150 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA--KNSIVLNLSYNNIETIPNSLFINLT-------  150 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh--cCcEEEEcccCccccCCchHHHhhH-------
Confidence            99999999998  79999999999999999999998 788888877  8999999999999988777777777       


Q ss_pred             CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCC-CCcchhccCCCCCCEEE
Q 047519          494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN-DNFPNWLEILPELQVLI  572 (892)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~  572 (892)
                       .|-.|||++|++. .+|..+..+..|++|.|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++
T Consensus       151 -DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD  228 (1255)
T KOG0444|consen  151 -DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD  228 (1255)
T ss_pred             -hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence             7788999999987 56667788889999999999876433334556778888999887543 45788888999999999


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID  652 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (892)
                      ++.|.+. .+|+.+  ..+++|+.|+||+|+|+.. ...                                         
T Consensus       229 lS~N~Lp-~vPecl--y~l~~LrrLNLS~N~iteL-~~~-----------------------------------------  263 (1255)
T KOG0444|consen  229 LSENNLP-IVPECL--YKLRNLRRLNLSGNKITEL-NMT-----------------------------------------  263 (1255)
T ss_pred             ccccCCC-cchHHH--hhhhhhheeccCcCceeee-ecc-----------------------------------------
Confidence            9999884 456655  7888999999999998732 111                                         


Q ss_pred             hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCC-CCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519          653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT-GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS  731 (892)
Q Consensus       653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  731 (892)
                         .....+|++|+||.|+++ ..|..+..|+.|+.|. +.+|+++ .-||+.++.+.+|+++..++|.+. ..|..+..
T Consensus       264 ---~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy-~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR  337 (1255)
T KOG0444|consen  264 ---EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY-ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR  337 (1255)
T ss_pred             ---HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH-hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh
Confidence               011567899999999999 9999999999999998 9999998 458999999999999999999998 89999999


Q ss_pred             CCCCCEEECCCCcCcccCCCCCCCC-cccCCccCCCCCCCCCCC
Q 047519          732 LKYLSVLNLSYNQFEGPIPQGSQFN-TFRNDSYVGNSGLCGFPL  774 (892)
Q Consensus       732 l~~L~~L~ls~N~l~g~iP~~~~~~-~~~~~~~~gN~~lc~~~~  774 (892)
                      +..|+.|.|+.|++- .+|.+-++. .+...+...||.|.-+|-
T Consensus       338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            999999999999997 677765443 456677888998887664

>PLN03210 Resistant to P

Probab=99.89  E-value=5.4e-22  Score=249.00  Aligned_cols=336  Identities=19%  Similarity=0.184  Sum_probs=242.8

Q ss_pred             ccccCCCCCcEEecCcccccc------ceeecc-chhhhhhccCCC-CCcCEEEccCCcCCcCCCccccCCCCCCEEECc
Q 047519          300 NWKSTLQSTVVLSTTEAEYMA------ITKAVK-EAIWLQVFVRGR-RHYAEPHFSSNQLSGSIPSSVYELENLILLRLP  371 (892)
Q Consensus       300 ~~l~~l~~L~~L~l~~~~~n~------l~~~~p-~l~~l~l~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  371 (892)
                      ..|..+++|+.|.+.   .+.      +...+| .+       ..+ .+|+.|++.++.+. .+|..| ...+|++|++.
T Consensus       552 ~aF~~m~~L~~L~~~---~~~~~~~~~~~~~lp~~~-------~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~  619 (1153)
T PLN03210        552 NAFKGMRNLLFLKFY---TKKWDQKKEVRWHLPEGF-------DYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQ  619 (1153)
T ss_pred             HHHhcCccccEEEEe---cccccccccceeecCcch-------hhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECc
Confidence            456778888888886   432      233445 44       444 46888888888776 667666 56888889998


Q ss_pred             CCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCC-CCCcchhhhCCCCccEEEccCCCCCC
Q 047519          372 SNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACN-ISEFPDILRTLHQLQWFNLSKNRIHG  450 (892)
Q Consensus       372 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~  450 (892)
                      +|.+. .++ ..+..+++|+.|+++++  .....+|....+++|+.|++++|. +..+|..++.+++|+.|++++|...+
T Consensus       620 ~s~l~-~L~-~~~~~l~~Lk~L~Ls~~--~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        620 GSKLE-KLW-DGVHSLTGLRNIDLRGS--KNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             Ccccc-ccc-cccccCCCCCEEECCCC--CCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence            88886 455 45678888899998887  545666655578888888888875 45888888888889999998876555


Q ss_pred             CCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCC
Q 047519          451 RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRL  530 (892)
Q Consensus       451 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  530 (892)
                      .+|..+ .+  ++|+.|++++|......|....           +|+.|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus       696 ~Lp~~i-~l--~sL~~L~Lsgc~~L~~~p~~~~-----------nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~  759 (1153)
T PLN03210        696 ILPTGI-NL--KSLYRLNLSGCSRLKSFPDIST-----------NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKS  759 (1153)
T ss_pred             ccCCcC-CC--CCCCEEeCCCCCCccccccccC-----------CcCeeecCCCccc-cccccc-cccccccccccccch
Confidence            666654 34  8888888888865544443222           6677788888775 455544 467788888876432


Q ss_pred             C-------CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519          531 E-------GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE  603 (892)
Q Consensus       531 ~-------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  603 (892)
                      .       ...+.....+++|+.|++++|.....+|.+++++++|+.|++++|...+.+|...   .+++|+.|++++|.
T Consensus       760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCS  836 (1153)
T ss_pred             hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCC
Confidence            1       1122223345678888888887777788888888888888888876666666653   57788888888876


Q ss_pred             CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCc
Q 047519          604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL  683 (892)
Q Consensus       604 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  683 (892)
                      ....+|..                                               .++|+.|+|++|.++ .+|..+..+
T Consensus       837 ~L~~~p~~-----------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l  868 (1153)
T PLN03210        837 RLRTFPDI-----------------------------------------------STNISDLNLSRTGIE-EVPWWIEKF  868 (1153)
T ss_pred             cccccccc-----------------------------------------------ccccCEeECCCCCCc-cChHHHhcC
Confidence            54444421                                               356788999999998 788889999


Q ss_pred             cccccccccCC-CCCCCCcchhccCCCCCCeeeCCCCc
Q 047519          684 NLLKGLNNISH-NNLTGDIPSLLRNLTEVESLDLSSNM  720 (892)
Q Consensus       684 ~~L~~L~~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~  720 (892)
                      ++|+.|+ +++ |++. .+|..+..+++|+.|++++|.
T Consensus       869 ~~L~~L~-L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        869 SNLSFLD-MNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCEEE-CCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            9999998 988 4555 678788889999999998885

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=3.6e-21  Score=241.66  Aligned_cols=337  Identities=15%  Similarity=0.067  Sum_probs=231.1

Q ss_pred             cccccCCCCCEEEcccCCC------CCcCCccccCCC-Ccceec--ccceeecChhhhcCCCCCcEEEccCCCCCcCCCc
Q 047519          230 KDLGEAKKILGMEICRNRT------CGKTMDVGLLFE-QDDTLG--QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN  300 (892)
Q Consensus       230 ~~l~~l~~L~~L~L~~n~~------~~~~~~~l~~l~-~L~~L~--~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~  300 (892)
                      ..+.++++|+.|.+..+..      ...+|..+..++ +|+.|.  ..-...+|. .+ ...+|++|++.+|.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC-cC-CccCCcEEECcCcccc-cccc
Confidence            4567788888888866532      234566666653 477776  333455665 44 4678888888888766 4666


Q ss_pred             cccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccC
Q 047519          301 WKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTE  380 (892)
Q Consensus       301 ~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~  380 (892)
                      .+..+++|+.|+++   ++...+.+|.+       ..+++|++|++++|.....+|..+.++++|+.|++++|.....+|
T Consensus       629 ~~~~l~~Lk~L~Ls---~~~~l~~ip~l-------s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        629 GVHSLTGLRNIDLR---GSKNLKEIPDL-------SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             ccccCCCCCEEECC---CCCCcCcCCcc-------ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            77788888888888   77666677777       778888888888876666788888888888888888875444666


Q ss_pred             hhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC-------CCCc
Q 047519          381 LYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH-------GRIS  453 (892)
Q Consensus       381 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-------~~~~  453 (892)
                       ..+ ++++|+.|++++|  .....+|.  ..++|+.|++++|.++.+|..+ .+++|++|++.++...       ...+
T Consensus       699 -~~i-~l~sL~~L~Lsgc--~~L~~~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~  771 (1153)
T PLN03210        699 -TGI-NLKSLYRLNLSGC--SRLKSFPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTP  771 (1153)
T ss_pred             -CcC-CCCCCCEEeCCCC--CCcccccc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccch
Confidence             222 6788888888887  44444443  2467888888888888887654 5677777777764321       1111


Q ss_pred             hhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC
Q 047519          454 SWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP  533 (892)
Q Consensus       454 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  533 (892)
                      ......  ++|+.|++++|...+.+|..+.++.        +|+.|++++|...+.+|..+ .+++|+.|++++|.....
T Consensus       772 ~~~~~~--~sL~~L~Ls~n~~l~~lP~si~~L~--------~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        772 LMTMLS--PSLTRLFLSDIPSLVELPSSIQNLH--------KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             hhhhcc--ccchheeCCCCCCccccChhhhCCC--------CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence            111222  6788888888876666666665555        77777777775555666655 577888888888765545


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519          534 LPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE  603 (892)
Q Consensus       534 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  603 (892)
                      +|..   .++|+.|+|++|.++. +|.++..+++|+.|++++|.-...+|...  ..++.|+.+++++|.
T Consensus       841 ~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        841 FPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCc
Confidence            5543   3567888888888865 67777888888888888755444555554  667778888887774

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.5e-21  Score=224.97  Aligned_cols=267  Identities=24%  Similarity=0.302  Sum_probs=151.0

Q ss_pred             CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519          339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL  418 (892)
Q Consensus       339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  418 (892)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|+++ .+| .   ..++|++|++++|++.  . +|.  ..++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP-~---lp~~Lk~LdLs~N~Lt--s-LP~--lp~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGNQLT--S-LPV--LPPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCC-C---CCCCCcEEEecCCccC--c-ccC--ccccccee
Confidence            33556777777777 5666654  36777888887777 344 1   2466777777777332  1 221  13456666


Q ss_pred             EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccE
Q 047519          419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV  498 (892)
Q Consensus       419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~  498 (892)
                      ++++|.++.+|..+   ++|+.|++++|+++. +|..   .  ++|+.|++++|++++++. .                 
T Consensus       268 ~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p--~~L~~LdLS~N~L~~Lp~-l-----------------  320 (788)
T PRK15387        268 SIFSNPLTHLPALP---SGLCKLWIFGNQLTS-LPVL---P--PGLQELSVSDNQLASLPA-L-----------------  320 (788)
T ss_pred             eccCCchhhhhhch---hhcCEEECcCCcccc-cccc---c--cccceeECCCCccccCCC-C-----------------
Confidence            66666666555422   345566666666652 3321   1  455555655555554321 1                 


Q ss_pred             EECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519          499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF  578 (892)
Q Consensus       499 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  578 (892)
                                        ..+|+.|++++|++++ +|..   ..+|++|+|++|+|++ +|..   .++|+.|++++|++
T Consensus       321 ------------------p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L  374 (788)
T PRK15387        321 ------------------PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL  374 (788)
T ss_pred             ------------------cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccc
Confidence                              1134445555555542 3321   1345566666666654 3321   23555666666666


Q ss_pred             CCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHh
Q 047519          579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERI  658 (892)
Q Consensus       579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (892)
                      ++ +|..     ..+|+.|++++|+|++ +|..                                               
T Consensus       375 ~~-LP~l-----~~~L~~LdLs~N~Lt~-LP~l-----------------------------------------------  400 (788)
T PRK15387        375 TS-LPAL-----PSGLKELIVSGNRLTS-LPVL-----------------------------------------------  400 (788)
T ss_pred             cc-Cccc-----ccccceEEecCCcccC-CCCc-----------------------------------------------
Confidence            43 3321     2356677777777663 3321                                               


Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS  731 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  731 (892)
                      .+.|+.|++++|+|+ .+|...   .+|+.|+ +++|+|+ .+|..+.++++|+.|+|++|+|++.+|..+..
T Consensus       401 ~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~-Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        401 PSELKELMVSGNRLT-SLPMLP---SGLLSLS-VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ccCCCEEEccCCcCC-CCCcch---hhhhhhh-hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            234666777777776 355432   3466676 7777777 67777777777777777777777777666533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=1.9e-21  Score=226.08  Aligned_cols=264  Identities=23%  Similarity=0.252  Sum_probs=182.0

Q ss_pred             CCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEE
Q 047519          388 KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYL  467 (892)
Q Consensus       388 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L  467 (892)
                      ..-..|++++|  .+. .+|... .++|+.|++.+|+++.+|..   +++|++|++++|+++. +|..   .  ++|+.|
T Consensus       201 ~~~~~LdLs~~--~Lt-sLP~~l-~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p--~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGES--GLT-TLPDCL-PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL---P--PGLLEL  267 (788)
T ss_pred             CCCcEEEcCCC--CCC-cCCcch-hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc---c--ccccee
Confidence            34567788877  333 344433 24677888888888777752   4677888888887773 4432   1  677777


Q ss_pred             EccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 047519          468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL  547 (892)
Q Consensus       468 ~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  547 (892)
                      ++++|.++.++. .+.           .|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..   ..+|+.|
T Consensus       268 ~Ls~N~L~~Lp~-lp~-----------~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L  327 (788)
T PRK15387        268 SIFSNPLTHLPA-LPS-----------GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKL  327 (788)
T ss_pred             eccCCchhhhhh-chh-----------hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccc
Confidence            777777765432 111           56667777777763 343   23567777777777774 4432   2356677


Q ss_pred             EccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCc
Q 047519          548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV  627 (892)
Q Consensus       548 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~  627 (892)
                      ++++|++++ +|..   ..+|+.|+|++|++++ +|..     .++|+.|++++|++++ +|..                
T Consensus       328 ~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l----------------  380 (788)
T PRK15387        328 WAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL----------------  380 (788)
T ss_pred             ccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc----------------
Confidence            777777765 4431   2467777777777764 3332     2456677777777763 4421                


Q ss_pred             cccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccC
Q 047519          628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRN  707 (892)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~  707 (892)
                                                     +..|+.|++++|+|+ .+|...   ++|+.|+ +++|+|+ .+|..+  
T Consensus       381 -------------------------------~~~L~~LdLs~N~Lt-~LP~l~---s~L~~Ld-LS~N~Ls-sIP~l~--  421 (788)
T PRK15387        381 -------------------------------PSGLKELIVSGNRLT-SLPVLP---SELKELM-VSGNRLT-SLPMLP--  421 (788)
T ss_pred             -------------------------------ccccceEEecCCccc-CCCCcc---cCCCEEE-ccCCcCC-CCCcch--
Confidence                                           346889999999999 466543   5788898 9999999 477643  


Q ss_pred             CCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519          708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG  752 (892)
Q Consensus       708 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  752 (892)
                       .+|+.|++++|+|+ .+|..+..+++|+.|+|++|+|+|.+|..
T Consensus       422 -~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        422 -SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             -hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence             46889999999998 78999999999999999999999988863

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=2.1e-23  Score=212.65  Aligned_cols=398  Identities=17%  Similarity=0.104  Sum_probs=199.6

Q ss_pred             CCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccC-CcCCcCCCcccc
Q 047519          283 KRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSS-NQLSGSIPSSVY  360 (892)
Q Consensus       283 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~-n~l~~~~p~~l~  360 (892)
                      .-..++|..|+++...|.+|+.+++|+.|+|+   +|.|+...| .|       .++++|.+|-+.+ |+|+......|+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS---~N~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS---KNNISFIAPDAF-------KGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceeccc---ccchhhcChHhh-------hhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            34566677777766556666677777777777   666666666 66       6666665555544 666654445566


Q ss_pred             CCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCC---Ccc-------
Q 047519          361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNIS---EFP-------  429 (892)
Q Consensus       361 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~---~lp-------  429 (892)
                      ++..|+.|.+.-|++... +.+.|..+++|..|.+.+|  .+.......+ .+..++.+.+..|.+.   .+|       
T Consensus       138 gL~slqrLllNan~i~Ci-r~~al~dL~~l~lLslyDn--~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCI-RQDALRDLPSLSLLSLYDN--KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             hHHHHHHHhcChhhhcch-hHHHHHHhhhcchhcccch--hhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            666666666666666633 3366666666666666666  2222222222 4555555555555422   111       


Q ss_pred             ---hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCcc
Q 047519          430 ---DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNF  506 (892)
Q Consensus       430 ---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l  506 (892)
                         -.+++.....-..+.+.++....+..|..    .++.+                             ..--.+.+..
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c----~~esl-----------------------------~s~~~~~d~~  261 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLC----SLESL-----------------------------PSRLSSEDFP  261 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhh----hHHhH-----------------------------HHhhccccCc
Confidence               11222222222222222222111111110    01100                             0000111111


Q ss_pred             Ccccc-ccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCC
Q 047519          507 NGKIS-QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN  585 (892)
Q Consensus       507 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  585 (892)
                      .+..| ..|..+++|+.|+|++|+++++-+.+|.+...+++|.|..|+|...-...|.++..|++|+|.+|+|+...|..
T Consensus       262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence            11222 23555666666666666666555556666666666666666665544455556666666666666665555555


Q ss_pred             CCCcCCCCccEEEcCCCCCcCcCCcchhhhhhh---------------hhcccCCCccccccCCCCCCCccceEEEEEcc
Q 047519          586 TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA---------------MMHGNNNSVEVDYMTPLNSSNYYESIILTIKG  650 (892)
Q Consensus       586 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~---------------l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (892)
                      +  ..+.+|..|+|-.|.+....--.|++.+-.               +..+.++...+....-   . ..+.  .....
T Consensus       342 F--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c---~-~~ee--~~~~~  413 (498)
T KOG4237|consen  342 F--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRC---G-GPEE--LGCLT  413 (498)
T ss_pred             c--cccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccccccc---C-Cccc--cCCCC
Confidence            4  555566666666665543322222222110               0111111110000000   0 0000  00000


Q ss_pred             chhhHHHhhhhhee-eecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCcccc
Q 047519          651 IDIQIERILTIFMT-IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL  729 (892)
Q Consensus       651 ~~~~~~~~l~~L~~-LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  729 (892)
                      ... .....+-+.+ ...|+..+. .+|..+-  ..-.+|. +.+|.++ .+|..  .+.+| .+|+|+|+++..--..|
T Consensus       414 s~~-cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tely-l~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf  484 (498)
T KOG4237|consen  414 SSP-CPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELY-LDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTF  484 (498)
T ss_pred             CCC-CCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHh-cccchhc-ccCHH--HHhhh-hcccccCceehhhcccc
Confidence            000 0000122222 233444443 4444332  1344676 8899998 77876  66778 89999999987777889


Q ss_pred             CCCCCCCEEECCCC
Q 047519          730 TSLKYLSVLNLSYN  743 (892)
Q Consensus       730 ~~l~~L~~L~ls~N  743 (892)
                      .++++|.+|-+|||
T Consensus       485 ~n~tql~tlilsyn  498 (498)
T KOG4237|consen  485 SNMTQLSTLILSYN  498 (498)
T ss_pred             cchhhhheeEEecC
Confidence            99999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=8.6e-23  Score=208.19  Aligned_cols=416  Identities=19%  Similarity=0.119  Sum_probs=258.9

Q ss_pred             CCccccCCCCcceec-ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCcccc-ccceeecc--c
Q 047519          252 TMDVGLLFEQDDTLG-QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEY-MAITKAVK--E  327 (892)
Q Consensus       252 ~~~~l~~l~~L~~L~-~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~-n~l~~~~p--~  327 (892)
                      +|..+-.=+-+-.|+ |++ ..||+.+|..+++|+.|||+.|+++..-|++|..+.+|.+|-+.   + |+|+ .+|  .
T Consensus        61 VP~~LP~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly---g~NkI~-~l~k~~  135 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY---GNNKIT-DLPKGA  135 (498)
T ss_pred             CcccCCCcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh---cCCchh-hhhhhH
Confidence            444444333444555 554 45666699999999999999999999999999999999988887   6 7775 566  8


Q ss_pred             hhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccc-
Q 047519          328 AIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL-  406 (892)
Q Consensus       328 l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-  406 (892)
                      |       +++..|+.|.+.-|++.-.....|..+++|..|.+.+|.+. .++...|..+..++.+.+..|++--.-.. 
T Consensus       136 F-------~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  136 F-------GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             h-------hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccc
Confidence            8       99999999999999999888899999999999999999998 66657899999999999998842111111 


Q ss_pred             ---------cCCC-CCCCccEEEccCCCCCCcch-hh-hCCCCccEEEccCCCCCCCCc-hhhhhhCCCcccEEEccCCC
Q 047519          407 ---------KVNS-SFPNLFGLGLSACNISEFPD-IL-RTLHQLQWFNLSKNRIHGRIS-SWMWDLGITALYYLDLSNNF  473 (892)
Q Consensus       407 ---------~~~~-~l~~L~~L~L~~n~l~~lp~-~l-~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~  473 (892)
                               +... .+....-..+.+.++..++. -+ ..+..+..=-.+.+...+.-| ..|..+  ++|++|++++|+
T Consensus       208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L--~~L~~lnlsnN~  285 (498)
T KOG4237|consen  208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL--PNLRKLNLSNNK  285 (498)
T ss_pred             hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc--ccceEeccCCCc
Confidence                     1111 22222233334444443331 11 111122111122333333444 345666  888888888888


Q ss_pred             CCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCC
Q 047519          474 LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQ  553 (892)
Q Consensus       474 l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~  553 (892)
                      ++.+.+..|..+.        .+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|.
T Consensus       286 i~~i~~~aFe~~a--------~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  286 ITRIEDGAFEGAA--------ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             cchhhhhhhcchh--------hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            8877777776665        66777777777766555667777777777777777776667777777777777777666


Q ss_pred             CCCC-cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc---CCcchhhhhhhhhcccCCCccc
Q 047519          554 INDN-FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV---LPTGYLDNFKAMMHGNNNSVEV  629 (892)
Q Consensus       554 l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~~l~~l~~l~~~~~~~  629 (892)
                      +... --.|++.       .|+.+.-.|..|-    .....++.++++++.+...   -|++. +      ....     
T Consensus       358 ~~CnC~l~wl~~-------Wlr~~~~~~~~~C----q~p~~~~~~~~~dv~~~~~~c~~~ee~-~------~~~s-----  414 (498)
T KOG4237|consen  358 FNCNCRLAWLGE-------WLRKKSVVGNPRC----QSPGFVRQIPISDVAFGDFRCGGPEEL-G------CLTS-----  414 (498)
T ss_pred             ccCccchHHHHH-------HHhhCCCCCCCCC----CCCchhccccchhccccccccCCcccc-C------CCCC-----
Confidence            5431 1112211       0111221122221    1223355566665554321   11110 0      0000     


Q ss_pred             cccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCC
Q 047519          630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT  709 (892)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~  709 (892)
                       ...+....-....+-.+.++...-..+++...+++++.+|.++ .+|.+  .+.+| .++ +|+|+++..--..|.+++
T Consensus       415 -~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~d-ls~n~i~~Lsn~tf~n~t  488 (498)
T KOG4237|consen  415 -SPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLD-LSNNRISSLSNYTFSNMT  488 (498)
T ss_pred             -CCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcc-cccCceehhhcccccchh
Confidence             0000000000000001111111111223455678999999999 88887  67788 787 999999977788999999


Q ss_pred             CCCeeeCCCC
Q 047519          710 EVESLDLSSN  719 (892)
Q Consensus       710 ~L~~L~Ls~N  719 (892)
                      +|.+|-||+|
T Consensus       489 ql~tlilsyn  498 (498)
T KOG4237|consen  489 QLSTLILSYN  498 (498)
T ss_pred             hhheeEEecC
Confidence            9999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.5e-19  Score=212.02  Aligned_cols=246  Identities=22%  Similarity=0.288  Sum_probs=143.6

Q ss_pred             CCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEE
Q 047519          389 NLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLD  468 (892)
Q Consensus       389 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~  468 (892)
                      +...|+++++  .+.. +|... .+.|+.|++++|+++.+|..+.  ++|+.|++++|+++ .+|..+.    .+|+.|+
T Consensus       179 ~~~~L~L~~~--~Lts-LP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~----~~L~~L~  247 (754)
T PRK15370        179 NKTELRLKIL--GLTT-IPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP----DTIQEME  247 (754)
T ss_pred             CceEEEeCCC--CcCc-CCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh----ccccEEE
Confidence            4566777776  3222 33222 2467777777777777776543  46777777777776 4454432    4677777


Q ss_pred             ccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEE
Q 047519          469 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLD  548 (892)
Q Consensus       469 Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  548 (892)
                      +++|.+..+ |..+.          .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|+
T Consensus       248 Ls~N~L~~L-P~~l~----------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~  310 (754)
T PRK15370        248 LSINRITEL-PERLP----------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLN  310 (754)
T ss_pred             CcCCccCcC-ChhHh----------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHH
Confidence            777776643 22221          15666677777666 3454443  36777777777766 3444332  3566677


Q ss_pred             ccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCcc
Q 047519          549 VGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVE  628 (892)
Q Consensus       549 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~  628 (892)
                      +++|+++. +|..+  .++|+.|++++|.+++ +|..+    .++|+.|++++|+|+ .+|..+                
T Consensus       311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~L~-~LP~~l----------------  365 (754)
T PRK15370        311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL----PPELQVLDVSKNQIT-VLPETL----------------  365 (754)
T ss_pred             hcCCcccc-CCccc--cccceeccccCCcccc-CChhh----cCcccEEECCCCCCC-cCChhh----------------
Confidence            77776665 34333  2466667777776654 44332    256667777777665 344321                


Q ss_pred             ccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhc---
Q 047519          629 VDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL---  705 (892)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l---  705 (892)
                                                    .+.|+.|+|++|+|+ .+|..+.  ..|+.|+ +++|+|+ .+|..+   
T Consensus       366 ------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld-Ls~N~L~-~LP~sl~~~  410 (754)
T PRK15370        366 ------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQ-ASRNNLV-RLPESLPHF  410 (754)
T ss_pred             ------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh-hccCCcc-cCchhHHHH
Confidence                                          235667777777777 4555543  2566776 7777776 444433   


Q ss_pred             -cCCCCCCeeeCCCCcCC
Q 047519          706 -RNLTEVESLDLSSNMLV  722 (892)
Q Consensus       706 -~~l~~L~~L~Ls~N~l~  722 (892)
                       +.++.+..|+|.+|.++
T Consensus       411 ~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        411 RGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhcCCCccEEEeeCCCcc
Confidence             33466677777777765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2.5e-19  Score=210.00  Aligned_cols=277  Identities=25%  Similarity=0.315  Sum_probs=172.9

Q ss_pred             CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEc
Q 047519          364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNL  443 (892)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L  443 (892)
                      +...|+++++.++ .+| ..+  .++|+.|++++|++  .. +|... .++|++|++++|+++.+|..+.  ++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP-~~I--p~~L~~L~Ls~N~L--ts-LP~~l-~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIP-ACI--PEQITTLILDNNEL--KS-LPENL-QGNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCC-ccc--ccCCcEEEecCCCC--Cc-CChhh-ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            4667888887777 455 222  24678888888843  32 33222 3578888888888887776553  46888888


Q ss_pred             cCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEE
Q 047519          444 SKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL  523 (892)
Q Consensus       444 s~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  523 (892)
                      ++|.+. .+|..+.    .+|+.|++++|+++.+ |..+.          .+|+.|++++|++++ +|..+.  ++|+.|
T Consensus       249 s~N~L~-~LP~~l~----s~L~~L~Ls~N~L~~L-P~~l~----------~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L  309 (754)
T PRK15370        249 SINRIT-ELPERLP----SALQSLDLFHNKISCL-PENLP----------EELRYLSVYDNSIRT-LPAHLP--SGITHL  309 (754)
T ss_pred             cCCccC-cCChhHh----CCCCEEECcCCccCcc-ccccC----------CCCcEEECCCCcccc-Ccccch--hhHHHH
Confidence            888877 5565543    5688888888877754 32222          157777777777774 444332  367788


Q ss_pred             EccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519          524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE  603 (892)
Q Consensus       524 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  603 (892)
                      ++++|.++. +|..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+    .++|+.|++++|+
T Consensus       310 ~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l----p~~L~~LdLs~N~  378 (754)
T PRK15370        310 NVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL----PPTITTLDVSRNA  378 (754)
T ss_pred             HhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh----cCCcCEEECCCCc
Confidence            888888873 45433  2578888888888776 565443  67888888888775 345433    2578888888888


Q ss_pred             CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh----
Q 047519          604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV----  679 (892)
Q Consensus       604 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~----  679 (892)
                      ++ .+|..+                                              ...|+.|++++|+|+ .+|..    
T Consensus       379 Lt-~LP~~l----------------------------------------------~~sL~~LdLs~N~L~-~LP~sl~~~  410 (754)
T PRK15370        379 LT-NLPENL----------------------------------------------PAALQIMQASRNNLV-RLPESLPHF  410 (754)
T ss_pred             CC-CCCHhH----------------------------------------------HHHHHHHhhccCCcc-cCchhHHHH
Confidence            77 445332                                              235667778888877 44443    


Q ss_pred             hcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC-CccccCCCCCCC
Q 047519          680 VGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLS  736 (892)
Q Consensus       680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~  736 (892)
                      .+.++.+..|+ +.+|.++.      ..+.+|+.| ++.+...|. ++..+..++.++
T Consensus       411 ~~~~~~l~~L~-L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~  460 (754)
T PRK15370        411 RGEGPQPTRII-VEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVR  460 (754)
T ss_pred             hhcCCCccEEE-eeCCCccH------HHHHHHHHh-hhcccccCCccccccccccccc
Confidence            34456777787 88888772      233444444 344444433 333334334333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.1e-18  Score=190.62  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=42.2

Q ss_pred             hhhheeeecCCCcCCCCChhhhcC-----ccccccccccCCCCCC----CCcchhccCCCCCCeeeCCCCcCCCC----C
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGK-----LNLLKGLNNISHNNLT----GDIPSLLRNLTEVESLDLSSNMLVGH----I  725 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----i  725 (892)
                      ++.|+.|++++|.+++.....+..     .+.|+.|+ +++|.++    ..++..+..+++|+.+|+++|.++..    +
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~-l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~  298 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS-LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL  298 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE-ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence            344555555555555422222221     24555665 6666554    12333444455666666666666533    2


Q ss_pred             ccccCCC-CCCCEEECCCCcC
Q 047519          726 PTQLTSL-KYLSVLNLSYNQF  745 (892)
Q Consensus       726 p~~l~~l-~~L~~L~ls~N~l  745 (892)
                      ...+... +.|+.+++.+|++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         299 AESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhhcCCchhhcccCCCCC
Confidence            3333333 4566666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=3.2e-18  Score=155.23  Aligned_cols=165  Identities=31%  Similarity=0.545  Sum_probs=128.1

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCC
Q 047519          514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR  593 (892)
Q Consensus       514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  593 (892)
                      +..+..++.|.+++|+++ .+|..++.+.+|+.|++++|+|.. +|..++.+++|+.|++.-|++. ..|..+  +.+|.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcccc--CCCch
Confidence            345678889999999999 677788999999999999999987 7888999999999999999883 566666  88899


Q ss_pred             ccEEEcCCCCCcCc-CCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcC
Q 047519          594 FRIIDLSHNEFTGV-LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKF  672 (892)
Q Consensus       594 L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  672 (892)
                      |++|||++|++... +|..||.                                            ++.|+.|+|+.|.+
T Consensus       104 levldltynnl~e~~lpgnff~--------------------------------------------m~tlralyl~dndf  139 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFY--------------------------------------------MTTLRALYLGDNDF  139 (264)
T ss_pred             hhhhhccccccccccCCcchhH--------------------------------------------HHHHHHHHhcCCCc
Confidence            99999999888642 4443322                                            56677777777777


Q ss_pred             CCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519          673 QGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS  731 (892)
Q Consensus       673 ~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  731 (892)
                      . .+|..++++++|+.|. +..|.+- ..|.+++.++.|+.|.+.+|+++ .+|..+++
T Consensus       140 e-~lp~dvg~lt~lqil~-lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  140 E-ILPPDVGKLTNLQILS-LRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             c-cCChhhhhhcceeEEe-eccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence            7 7777777777777777 7777777 67777777777777777777777 56655554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.66  E-value=8e-18  Score=183.89  Aligned_cols=284  Identities=23%  Similarity=0.238  Sum_probs=157.3

Q ss_pred             EEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCc--cccCCC-CCCCccEEEccCCCCCC-------cchhhhCCC
Q 047519          367 LLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST--KLKVNS-SFPNLFGLGLSACNISE-------FPDILRTLH  436 (892)
Q Consensus       367 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~-~l~~L~~L~L~~n~l~~-------lp~~l~~l~  436 (892)
                      .|+|..+.+++.--...+..+.+|++|+++++.+...+  .++... ..+++++|+++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45666666653222244556666777777777321111  011111 34445555555554431       123344455


Q ss_pred             CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCc----cccc
Q 047519          437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG----KISQ  512 (892)
Q Consensus       437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~----~~~~  512 (892)
                      +|+.|++++|.+.+..+..+..+  ..                            . ++|++|++++|++.+    .+..
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l--~~----------------------------~-~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESL--LR----------------------------S-SSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHH--hc----------------------------c-CcccEEEeeCCccchHHHHHHHH
Confidence            55555555555544333333333  22                            0 135555555555442    2222


Q ss_pred             cccCC-CCCCEEEccCCCCCCC----CCccccCCCCCcEEEccCCCCCCC----cchhccCCCCCCEEEccCCcCCCCCC
Q 047519          513 KFVNS-CNLTNLNLNGNRLEGP----LPLSLVNCHHLEVLDVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIG  583 (892)
Q Consensus       513 ~~~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~  583 (892)
                      .+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+...
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  210 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA  210 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence            34444 6777777777777632    233455666777777777777642    23334455678888888877653321


Q ss_pred             CCC--CCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhh
Q 047519          584 DNT--TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTI  661 (892)
Q Consensus       584 ~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  661 (892)
                      ..+  .+..+++|++|++++|.+++.....+...+                                       ....+.
T Consensus       211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---------------------------------------~~~~~~  251 (319)
T cd00116         211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASAL---------------------------------------LSPNIS  251 (319)
T ss_pred             HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH---------------------------------------hccCCC
Confidence            110  124567888888888887742221111100                                       001357


Q ss_pred             heeeecCCCcCCC----CChhhhcCccccccccccCCCCCCCC----cchhccCC-CCCCeeeCCCCcC
Q 047519          662 FMTIDLSSNKFQG----GIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNL-TEVESLDLSSNML  721 (892)
Q Consensus       662 L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~~Ls~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l  721 (892)
                      |+.|++++|.++.    .+...+..+++|+.++ +++|.++..    +...+... +.|++||+.+|.+
T Consensus       252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~-l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELD-LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE-CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            8888888888862    3445566678888898 999999855    44455555 6888999888864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=4.2e-15  Score=174.40  Aligned_cols=118  Identities=35%  Similarity=0.606  Sum_probs=106.6

Q ss_pred             hheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEEC
Q 047519          661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL  740 (892)
Q Consensus       661 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  740 (892)
                      .++.|+|++|.++|.+|..++.+++|+.|+ |++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~-Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSIN-LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEE-CCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            478899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCcccCCCCC--CCCcccCCccCCCCCCCCCCCCCCCC
Q 047519          741 SYNQFEGPIPQGS--QFNTFRNDSYVGNSGLCGFPLLESCN  779 (892)
Q Consensus       741 s~N~l~g~iP~~~--~~~~~~~~~~~gN~~lc~~~~~~~c~  779 (892)
                      ++|+++|.+|...  .+.......+.+|+.+|+.|....|.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999999753  12233456789999999987666674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=1.1e-16  Score=145.23  Aligned_cols=162  Identities=23%  Similarity=0.438  Sum_probs=142.0

Q ss_pred             ccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhh
Q 047519          538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFK  617 (892)
Q Consensus       538 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~  617 (892)
                      +-++..++.|.|++|+++. +|..+..+.+|+.|++++|++. ..|..+  ..++.|+.|+++-|++. .+|.+| +.  
T Consensus        29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~i--ssl~klr~lnvgmnrl~-~lprgf-gs--  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSI--SSLPKLRILNVGMNRLN-ILPRGF-GS--  100 (264)
T ss_pred             ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhh--hhchhhhheecchhhhh-cCcccc-CC--
Confidence            4456788899999999987 6667899999999999999995 556666  88999999999999997 777664 22  


Q ss_pred             hhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCC-CChhhhcCccccccccccCCCC
Q 047519          618 AMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNNISHNN  696 (892)
Q Consensus       618 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L~~L~~Ls~N~  696 (892)
                                                               ++.|+.|||++|++.. ..|..|..++.|+.|. |++|.
T Consensus       101 -----------------------------------------~p~levldltynnl~e~~lpgnff~m~tlraly-l~dnd  138 (264)
T KOG0617|consen  101 -----------------------------------------FPALEVLDLTYNNLNENSLPGNFFYMTTLRALY-LGDND  138 (264)
T ss_pred             -----------------------------------------CchhhhhhccccccccccCCcchhHHHHHHHHH-hcCCC
Confidence                                                     6778999999999974 6889999999999998 99999


Q ss_pred             CCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519          697 LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       697 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      +. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++-..|+
T Consensus       139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            99 88999999999999999999998 8999999999999999999999955554

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.8e-14  Score=169.19  Aligned_cols=152  Identities=26%  Similarity=0.402  Sum_probs=126.9

Q ss_pred             CCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCc----cccceEecC--CCC--eEEEEECCCCCC
Q 047519            5 LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCC----SWDGVTCDT--VAG--HVIGLDLSCSWL   76 (892)
Q Consensus         5 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c----~w~gv~C~~--~~~--~v~~L~L~~~~l   76 (892)
                      .+.++|..||+++|+.+..+                ...+|. +..||    .|.||.|..  ..+  +|+.|+|+++.+
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~----------------~~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L  430 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLP----------------LRFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL  430 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCc----------------ccCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCc
Confidence            45678999999999988543                124796 33443    799999952  222  699999999999


Q ss_pred             CCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcc
Q 047519           77 HGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDC  156 (892)
Q Consensus        77 ~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~  156 (892)
                      .|.++.  .+..+++|++|+|++|.+.+. +|+.++.+++|++|+|++|.++|.+|..++  ++++|++|+|++|.+.+.
T Consensus       431 ~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~--~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        431 RGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLG--QLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             cccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHh--cCCCCCEEECcCCccccc
Confidence            999998  899999999999999999987 999999999999999999999999999999  999999999999888889


Q ss_pred             hhhhhhcccCC-CCCCCEEecCCccCc
Q 047519          157 FQLDVKTTFLH-DDLEEEIYMTQLDGF  182 (892)
Q Consensus       157 ~p~~l~~~~~~-l~~L~~L~L~~~~~~  182 (892)
                      +|..+.    . ..++..+++.+|...
T Consensus       506 iP~~l~----~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        506 VPAALG----GRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CChHHh----hccccCceEEecCCccc
Confidence            998876    4 345667777766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=4.2e-13  Score=144.01  Aligned_cols=102  Identities=27%  Similarity=0.454  Sum_probs=57.7

Q ss_pred             cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519          497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN  576 (892)
Q Consensus       497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  576 (892)
                      ...|++.|++. .+|..++.+..|+.+.+.+|.+. .+|..+.++..|++|||+.|+++. +|..+..|+ |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence            44566666665 55555555666666666666665 556666666666666666666654 444444443 555555555


Q ss_pred             cCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                      +++ .+|+.+  +..+.|..||.+.|++.
T Consensus       154 kl~-~lp~~i--g~~~tl~~ld~s~nei~  179 (722)
T KOG0532|consen  154 KLT-SLPEEI--GLLPTLAHLDVSKNEIQ  179 (722)
T ss_pred             ccc-cCCccc--ccchhHHHhhhhhhhhh
Confidence            552 334433  34445555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=4.1e-11  Score=134.88  Aligned_cols=199  Identities=31%  Similarity=0.467  Sum_probs=150.8

Q ss_pred             EEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC-CCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519          498 VLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH-HLEVLDVGNNQINDNFPNWLEILPELQVLILRSN  576 (892)
Q Consensus       498 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  576 (892)
                      .+++..|.+.... ..+...+.++.|++.+|.++ .+|......+ +|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            3555555553222 22334467888888888888 5666666664 88899999998876 5566788889999999999


Q ss_pred             cCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHH
Q 047519          577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE  656 (892)
Q Consensus       577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (892)
                      ++....+. .  ...+.|+.|++++|+++ .+|...                                            
T Consensus       174 ~l~~l~~~-~--~~~~~L~~L~ls~N~i~-~l~~~~--------------------------------------------  205 (394)
T COG4886         174 DLSDLPKL-L--SNLSNLNNLDLSGNKIS-DLPPEI--------------------------------------------  205 (394)
T ss_pred             hhhhhhhh-h--hhhhhhhheeccCCccc-cCchhh--------------------------------------------
Confidence            88644332 2  26788999999999988 455321                                            


Q ss_pred             HhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCC
Q 047519          657 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS  736 (892)
Q Consensus       657 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  736 (892)
                      ..+..|++|++++|.+. .++..+.++..+..+. +++|++. .+|..++.+++++.|++++|+++ .++. +..+.+|+
T Consensus       206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~-l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~  280 (394)
T COG4886         206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE-LSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLR  280 (394)
T ss_pred             hhhhhhhhhhhcCCcce-ecchhhhhcccccccc-cCCceee-eccchhccccccceecccccccc-cccc-ccccCccC
Confidence            01455888999999755 6778889999999998 9999998 55788899999999999999998 4544 88999999


Q ss_pred             EEECCCCcCcccCCCC
Q 047519          737 VLNLSYNQFEGPIPQG  752 (892)
Q Consensus       737 ~L~ls~N~l~g~iP~~  752 (892)
                      .|++++|.++...|..
T Consensus       281 ~L~~s~n~~~~~~~~~  296 (394)
T COG4886         281 ELDLSGNSLSNALPLI  296 (394)
T ss_pred             EEeccCccccccchhh
Confidence            9999999999887764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=2e-12  Score=138.85  Aligned_cols=103  Identities=26%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519          496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS  575 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  575 (892)
                      |+.+.+..|.+. .+|..++++..|++|+|+.|+++ .+|..+..|+ |+.|.+++|+++. +|..++.++.|..|+.+.
T Consensus       100 Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  100 LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcccc-CCcccccchhHHHhhhhh
Confidence            344444444444 34444455555555555555554 3444444444 5555555555543 444444444555555555


Q ss_pred             CcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                      |.+.. +|..+  +.+.+|+.|.+..|++.
T Consensus       176 nei~s-lpsql--~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  176 NEIQS-LPSQL--GYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             hhhhh-chHHh--hhHHHHHHHHHhhhhhh
Confidence            55432 22222  44445555555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=2.1e-10  Score=129.04  Aligned_cols=179  Identities=29%  Similarity=0.403  Sum_probs=90.4

Q ss_pred             CCccEEEccCCCCCCcchhhhCCC-CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecC
Q 047519          413 PNLFGLGLSACNISEFPDILRTLH-QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD  491 (892)
Q Consensus       413 ~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~  491 (892)
                      +.++.|++.+|.++.+|.....+. +|+.|++++|.+. .+|..+..+  ++|+.|++++|+++...+... .+      
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l--~~L~~L~l~~N~l~~l~~~~~-~~------  185 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL--PNLKNLDLSFNDLSDLPKLLS-NL------  185 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcc--ccccccccCCchhhhhhhhhh-hh------
Confidence            344444444444444444444442 4555555555544 222333333  444455554444443332110 01      


Q ss_pred             CCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEE
Q 047519          492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL  571 (892)
Q Consensus       492 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  571 (892)
                        +.|+.|++++|++. .+|........|++|.+++|++. ..+..+..+.++..+.+.+|++.. .+..++.+++++.|
T Consensus       186 --~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L  260 (394)
T COG4886         186 --SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETL  260 (394)
T ss_pred             --hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhcccccccee
Confidence              13444444444444 23333233344666666666433 345556666666666666666654 24556666666777


Q ss_pred             EccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCc
Q 047519          572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT  610 (892)
Q Consensus       572 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  610 (892)
                      ++++|.++...+  +  ..+.+++.|++++|.++...|.
T Consensus       261 ~~s~n~i~~i~~--~--~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         261 DLSNNQISSISS--L--GSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccccccccc--c--cccCccCEEeccCccccccchh
Confidence            777666644332  2  5566667777777766655543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=1.9e-11  Score=124.62  Aligned_cols=97  Identities=9%  Similarity=-0.042  Sum_probs=55.8

Q ss_pred             CCCCCCEEecCCccCccccccc-----CCCCCCcccEEEccCCCCcCcc----CChhHHHHhhhcccccccccccccCCC
Q 047519          167 HDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIAS----KSKDEIEKLKTQLNQEFEMKDLGEAKK  237 (892)
Q Consensus       167 ~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~~----~~p~~i~~l~~~~~~~~p~~~l~~l~~  237 (892)
                      .+..+..++|++|.+.......     ...  ++|+..++++-   ++|    .+|+.+..++         +.+..+++
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~--~~L~~v~~sd~---ftGR~~~Ei~e~L~~l~---------~aL~~~~~   93 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASK--KELREVNLSDM---FTGRLKDEIPEALKMLS---------KALLGCPK   93 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhc--ccceeeehHhh---hcCCcHHHHHHHHHHHH---------HHHhcCCc
Confidence            4555666666666654332222     344  56666666642   333    3454444444         55667778


Q ss_pred             CCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCC
Q 047519          238 ILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFA  295 (892)
Q Consensus       238 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~  295 (892)
                      |++||||+|.+....++.+..                  -+..+..|++|.|.+|.+.
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~------------------ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEE------------------LLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             eeEeeccccccCccchHHHHH------------------HHHhccCHHHHhhhcCCCC
Confidence            888888888665444433321                  4556777777777777664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=5.8e-12  Score=128.25  Aligned_cols=112  Identities=13%  Similarity=0.008  Sum_probs=63.3

Q ss_pred             hhcCCCCCcEEEccCCCCCcC----CCccccCCCCCcEEecCccccccceeecc-----chhhhhhccCCCCCcCEEEcc
Q 047519          277 YIGDLDKRRSITGYVFNFAGG----PINWKSTLQSTVVLSTTEAEYMAITKAVK-----EAIWLQVFVRGRRHYAEPHFS  347 (892)
Q Consensus       277 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-----~l~~l~l~~~~l~~L~~L~Ls  347 (892)
                      .+...+.|+.+.+..|.+...    +...+..+++|++||+.   +|.++..-.     .+       ..+++|++|+++
T Consensus       180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~---DNtft~egs~~LakaL-------~s~~~L~El~l~  249 (382)
T KOG1909|consen  180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR---DNTFTLEGSVALAKAL-------SSWPHLRELNLG  249 (382)
T ss_pred             HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc---cchhhhHHHHHHHHHh-------cccchheeeccc
Confidence            445556677777777665432    22345666777777777   666653222     34       556667777777


Q ss_pred             CCcCCcCCCcccc-----CCCCCCEEECcCCcCCCccC---hhhcCCCCCCCEEEcccC
Q 047519          348 SNQLSGSIPSSVY-----ELENLILLRLPSNRLSGTTE---LYDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       348 ~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n  398 (892)
                      +|.+......+|.     ..++|++|.+.+|.|+..-.   .......+.|+.|+|++|
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            7766544333332     35677777777776653110   122334566666666666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.4e-10  Score=121.34  Aligned_cols=211  Identities=26%  Similarity=0.202  Sum_probs=123.2

Q ss_pred             CCCCCcCEEEccCCcCCcCCC-ccccCCCCCCEEECcCCcCCCccCh-hhcCCCCCCCEEEcccCCCCCCccccCCC--C
Q 047519          336 RGRRHYAEPHFSSNQLSGSIP-SSVYELENLILLRLPSNRLSGTTEL-YDFAKLKNLKWLFVSNNRLSLSTKLKVNS--S  411 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~  411 (892)
                      .++.+|+++.|.+........ .....+++++.|||+.|-+....+. .....+|+|+.|+|+.|++  ........  .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl--~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL--SNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc--cCCccccchhh
Confidence            455666666666665542111 2455677888888888766532221 2345678888888888843  32222222  6


Q ss_pred             CCCccEEEccCCCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeee
Q 047519          412 FPNLFGLGLSACNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLN  489 (892)
Q Consensus       412 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  489 (892)
                      ++.|+.|.++.|.++  .+-..+..+|+|+.|+|.+|............+  ..|+.|+|++|++......         
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~--~~L~~LdLs~N~li~~~~~---------  264 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL--QTLQELDLSNNNLIDFDQG---------  264 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh--hHHhhccccCCcccccccc---------
Confidence            788888888888888  555666778888888888885332222222233  5677777777766543210         


Q ss_pred             cCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC-CCcc-----ccCCCCCcEEEccCCCCCCC-cchhc
Q 047519          490 FDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP-LPLS-----LVNCHHLEVLDVGNNQINDN-FPNWL  562 (892)
Q Consensus       490 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~-~p~~~  562 (892)
                                            ...+.++.|+.|+++.+.+... .|+.     ...+++|++|++..|+|... .-..+
T Consensus       265 ----------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l  322 (505)
T KOG3207|consen  265 ----------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL  322 (505)
T ss_pred             ----------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence                                  1123344555555555555421 1111     23456777777777777541 11234


Q ss_pred             cCCCCCCEEEccCCcCCCC
Q 047519          563 EILPELQVLILRSNRFWGP  581 (892)
Q Consensus       563 ~~l~~L~~L~L~~N~l~~~  581 (892)
                      ..+++|+.|.+..|.++..
T Consensus       323 ~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  323 RTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hccchhhhhhccccccccc
Confidence            4567777777777777543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=7e-10  Score=133.08  Aligned_cols=105  Identities=19%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             CCCCeEecCCCC--CCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCC
Q 047519           90 PHIRKLNLAFND--FNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLH  167 (892)
Q Consensus        90 ~~L~~L~Ls~n~--l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~  167 (892)
                      +.|++|-+..|.  +... -+++|..++.|++||||+|.-.+.+|.+|+  .|.+||||+++++. ...+|..+.    +
T Consensus       545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~L~~t~-I~~LP~~l~----~  616 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLDLSDTG-ISHLPSGLG----N  616 (889)
T ss_pred             CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhcccccCCC-ccccchHHH----H
Confidence            368888888775  3332 335578888888888888776678888888  88888888888876 457888888    8


Q ss_pred             CCCCCEEecCCccCccccccc-CCCCCCcccEEEccCC
Q 047519          168 DDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVD  204 (892)
Q Consensus       168 l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n  204 (892)
                      +..|.+|++..+......+.. ..+  ++|++|.+...
T Consensus       617 Lk~L~~Lnl~~~~~l~~~~~i~~~L--~~Lr~L~l~~s  652 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESIPGILLEL--QSLRVLRLPRS  652 (889)
T ss_pred             HHhhheeccccccccccccchhhhc--ccccEEEeecc
Confidence            888888888877765555555 557  78888887655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=2e-10  Score=114.14  Aligned_cols=105  Identities=26%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             CCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEE
Q 047519          363 ENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFN  442 (892)
Q Consensus       363 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  442 (892)
                      ..|+++||++|.|+ .+. .+..-.|+++.|++|+|.+...+.   ...+++|+.|||++|.++.+..|-..+-+++.|.
T Consensus       284 q~LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhh-hhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            34444455554444 222 233334444555555542221111   1134445555555554444444444444455555


Q ss_pred             ccCCCCCCCCchhhhhhCCCcccEEEccCCCCCC
Q 047519          443 LSKNRIHGRISSWMWDLGITALYYLDLSNNFLTN  476 (892)
Q Consensus       443 Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  476 (892)
                      |++|.|..  -..+..+  -+|..||+++|+|..
T Consensus       359 La~N~iE~--LSGL~KL--YSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  359 LAQNKIET--LSGLRKL--YSLVNLDLSSNQIEE  388 (490)
T ss_pred             hhhhhHhh--hhhhHhh--hhheeccccccchhh
Confidence            55554431  1223333  445555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.3e-10  Score=118.66  Aligned_cols=186  Identities=20%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             CCCccEEEccCCCCC---CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCee
Q 047519          412 FPNLFGLGLSACNIS---EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQL  488 (892)
Q Consensus       412 l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  488 (892)
                      +++++.|+|+.|-+.   .+-.....+|+|+.|+++.|++.......... .++.|+.|.++.|.++...-..+      
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-~l~~lK~L~l~~CGls~k~V~~~------  217 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-LLSHLKQLVLNSCGLSWKDVQWI------  217 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-hhhhhheEEeccCCCCHHHHHHH------
Confidence            344444444444333   12233445555666666665554222211111 12556666666665552210000      


Q ss_pred             ecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC--ccccCCCCCcEEEccCCCCCCC-cchh----
Q 047519          489 NFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP--LSLVNCHHLEVLDVGNNQINDN-FPNW----  561 (892)
Q Consensus       489 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~-~p~~----  561 (892)
                       +-.+++|+.|++..|...........-+..|++|+|++|++.. .+  ...+.++.|+.|+++.+.+... .|+.    
T Consensus       218 -~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~  295 (505)
T KOG3207|consen  218 -LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLD  295 (505)
T ss_pred             -HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchh
Confidence             0111255666666664333333334456689999999998873 34  4567899999999999999874 3333    


Q ss_pred             -ccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc
Q 047519          562 -LEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV  607 (892)
Q Consensus       562 -~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  607 (892)
                       ...+++|++|++..|++.. .+..-....+++|+.|.+..|.++..
T Consensus       296 kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence             3468999999999999832 22222235677888888889998754

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=3.3e-10  Score=112.61  Aligned_cols=61  Identities=31%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCC-cchhccCCCCCCEEEccCCcC
Q 047519          516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILRSNRF  578 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l  578 (892)
                      .+.++++|.|++|.+..  -..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|.+
T Consensus       350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            34455666666665542  12344555566666666665432 112344555555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=2.4e-09  Score=103.13  Aligned_cols=38  Identities=34%  Similarity=0.460  Sum_probs=11.9

Q ss_pred             CCCccEEEccCCCCCCcc--hhhhCCCCccEEEccCCCCC
Q 047519          412 FPNLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIH  449 (892)
Q Consensus       412 l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~  449 (892)
                      +|+|++|++++|++..+.  ..+..+++|+.|++.+|.+.
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            344444444444443221  23445555555555555554

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.77  E-value=7.3e-09  Score=74.77  Aligned_cols=40  Identities=43%  Similarity=0.858  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCC--CCCccccceEec
Q 047519            8 HDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKED--ADCCSWDGVTCD   60 (892)
Q Consensus         8 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~w~gv~C~   60 (892)
                      ++|++||++||+++..+  +.           ..+.+|+..  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~--~~-----------~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNND--PS-----------GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-S--C------------CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccc--cC-----------cccccCCCcCCCCCeeeccEEeC
Confidence            68999999999999854  32           489999976  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=3.1e-09  Score=102.33  Aligned_cols=104  Identities=27%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccE
Q 047519          338 RRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFG  417 (892)
Q Consensus       338 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  417 (892)
                      +.+|+.|++++|.++..  +.+..+++|++|++++|+|+. +.......+++|++|++++|+|.-.+.+.....+++|+.
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            33444444444444421  124445555555555555542 220111234555555555554433333322224555555


Q ss_pred             EEccCCCCCCcc----hhhhCCCCccEEEcc
Q 047519          418 LGLSACNISEFP----DILRTLHQLQWFNLS  444 (892)
Q Consensus       418 L~L~~n~l~~lp----~~l~~l~~L~~L~Ls  444 (892)
                      |++.+|.++.-+    ..+..+|+|+.||-.
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            555555555322    356778888887753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=2.4e-09  Score=120.63  Aligned_cols=104  Identities=25%  Similarity=0.250  Sum_probs=52.2

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +++.+++.+|.|..... .+..+++|++|++++|.|+...  .+..++.|+.|++++|.|+..  ..+..+++|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            44455555555543211 1344555666666666655322  244445566666666666542  234445566666666


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                      +|++...-+...  ..+.+++.+++++|.+.
T Consensus       171 ~n~i~~ie~~~~--~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  171 YNRIVDIENDEL--SELISLEELDLGGNSIR  199 (414)
T ss_pred             cchhhhhhhhhh--hhccchHHHhccCCchh
Confidence            665543333101  34555666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=2.1e-09  Score=121.11  Aligned_cols=246  Identities=25%  Similarity=0.250  Sum_probs=128.9

Q ss_pred             CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519          413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS  492 (892)
Q Consensus       413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~  492 (892)
                      ..++.+.+..|.+..+-..+..+.+|+.|++.+|+|..... .+..+  ++|++|++++|.|+.+.+             
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~--~~L~~L~ls~N~I~~i~~-------------  135 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSL--VNLQVLDLSFNKITKLEG-------------  135 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhh--hcchheeccccccccccc-------------
Confidence            33444444444444432334455556666666665553221 12223  555555555555543321             


Q ss_pred             CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEE
Q 047519          493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVL  571 (892)
Q Consensus       493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L  571 (892)
                                           +..++.|+.|++++|.++. + ..+..++.|+.+++++|++...-+ . ...+.+++.+
T Consensus       136 ---------------------l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l  191 (414)
T KOG0531|consen  136 ---------------------LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEEL  191 (414)
T ss_pred             ---------------------hhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHH
Confidence                                 2233345666666666652 1 234446666666666666665433 1 3556667777


Q ss_pred             EccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccc
Q 047519          572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGI  651 (892)
Q Consensus       572 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  651 (892)
                      ++.+|.+.....  .  ..+..+..+++..|.++..-+.....                                     
T Consensus       192 ~l~~n~i~~i~~--~--~~~~~l~~~~l~~n~i~~~~~l~~~~-------------------------------------  230 (414)
T KOG0531|consen  192 DLGGNSIREIEG--L--DLLKKLVLLSLLDNKISKLEGLNELV-------------------------------------  230 (414)
T ss_pred             hccCCchhcccc--h--HHHHHHHHhhcccccceeccCcccch-------------------------------------
Confidence            777776632221  1  23334444566666665332211000                                     


Q ss_pred             hhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC---Cccc
Q 047519          652 DIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH---IPTQ  728 (892)
Q Consensus       652 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~---ip~~  728 (892)
                             ...|+.+++++|.+. .++..+..+..+..|+ +++|++...-  .+...+.+..+..+.|.+...   ....
T Consensus       231 -------~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~-~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (414)
T KOG0531|consen  231 -------MLHLRELYLSGNRIS-RSPEGLENLKNLPVLD-LSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEY  299 (414)
T ss_pred             -------hHHHHHHhcccCccc-cccccccccccccccc-hhhccccccc--cccccchHHHhccCcchhcchhhhhccc
Confidence                   013666777777776 4445566666777776 7777776332  244556666677777766521   1111


Q ss_pred             -cCCCCCCCEEECCCCcCcccCC
Q 047519          729 -LTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       729 -l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                       ......++.+.+.+|+.....+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  300 ITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccccccccCccccccc
Confidence             4456677777788887776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=6.1e-09  Score=82.29  Aligned_cols=60  Identities=38%  Similarity=0.520  Sum_probs=36.4

Q ss_pred             ccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcC
Q 047519          685 LLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF  745 (892)
Q Consensus       685 ~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l  745 (892)
                      +|++|+ +++|+|+...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~-l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLD-LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEE-ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEE-CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455565 666666644445666666666666666666655555666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=1.5e-08  Score=121.79  Aligned_cols=131  Identities=15%  Similarity=0.061  Sum_probs=102.2

Q ss_pred             ccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCC--CccccCC-CCCcccCCCCceecCCcccCCcchhhhhh
Q 047519           86 LFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSN--FMGSIPA-SIDLINVSRLSTNYLPIFAFSDCFQLDVK  162 (892)
Q Consensus        86 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~--~~~~~p~-~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~  162 (892)
                      ..+....|...+-+|.+..  ++... ..++|++|-+..|.  +. .++. .|.  .++.|++|||++|...+.+|..++
T Consensus       519 ~~~~~~~rr~s~~~~~~~~--~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~I~  592 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEH--IAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFR--SLPLLRVLDLSGNSSLSKLPSSIG  592 (889)
T ss_pred             ccchhheeEEEEeccchhh--ccCCC-CCCccceEEEeecchhhh-hcCHHHHh--hCcceEEEECCCCCccCcCChHHh
Confidence            4556778899998888765  44433 34479999999986  33 4443 466  899999999999888999999999


Q ss_pred             cccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEE
Q 047519          163 TTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGM  241 (892)
Q Consensus       163 ~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L  241 (892)
                          .+-+||+|+|++..+. ..|.. .+|  ..|.+|++..+  .....+|                .....+.+|++|
T Consensus       593 ----~Li~LryL~L~~t~I~-~LP~~l~~L--k~L~~Lnl~~~--~~l~~~~----------------~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  593 ----ELVHLRYLDLSDTGIS-HLPSGLGNL--KKLIYLNLEVT--GRLESIP----------------GILLELQSLRVL  647 (889)
T ss_pred             ----hhhhhhcccccCCCcc-ccchHHHHH--Hhhheeccccc--ccccccc----------------chhhhcccccEE
Confidence                9999999999999887 55555 889  99999999888  4444445                556668999999


Q ss_pred             EcccCC
Q 047519          242 EICRNR  247 (892)
Q Consensus       242 ~L~~n~  247 (892)
                      .+..-.
T Consensus       648 ~l~~s~  653 (889)
T KOG4658|consen  648 RLPRSA  653 (889)
T ss_pred             Eeeccc
Confidence            987654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.62  E-value=1.3e-08  Score=80.39  Aligned_cols=61  Identities=38%  Similarity=0.487  Sum_probs=56.5

Q ss_pred             hhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcC
Q 047519          660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML  721 (892)
Q Consensus       660 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  721 (892)
                      ++|+.|++++|+++...+..|.++++|++|+ +++|+++...|..|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~-l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLD-LSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEE-ETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeE-ccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999977678899999999999 999999988889999999999999999986

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=4e-09  Score=105.15  Aligned_cols=181  Identities=12%  Similarity=0.033  Sum_probs=108.0

Q ss_pred             CCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCC
Q 047519           91 HIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDL  170 (892)
Q Consensus        91 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~  170 (892)
                      .|++||||...++...+-.-+..|.+|+-|.|.++++.+.+-..|+  +-.+|+.|+|+.+.  |--..++...|++++.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA--kN~~L~~lnlsm~s--G~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA--KNSNLVRLNLSMCS--GFTENALQLLLSSCSR  261 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh--ccccceeecccccc--ccchhHHHHHHHhhhh
Confidence            4788888887776554455567788888888888888877777777  77888888887632  1111233334448888


Q ss_pred             CCEEecCCccCccccccc--CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCC
Q 047519          171 EEEIYMTQLDGFKVAEKE--NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRT  248 (892)
Q Consensus       171 L~~L~L~~~~~~~~~~~~--~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~  248 (892)
                      |..|+|++|.........  ... +++|+.|+|++++-.+...   .+.            .-..++++|.+|||++|..
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hi-se~l~~LNlsG~rrnl~~s---h~~------------tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHI-SETLTQLNLSGYRRNLQKS---HLS------------TLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhh-chhhhhhhhhhhHhhhhhh---HHH------------HHHHhCCceeeeccccccc
Confidence            888888888765544322  111 1667777777762001000   000            1224577777777777621


Q ss_pred             CCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCc---cccCCCCCcEEecC
Q 047519          249 CGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN---WKSTLQSTVVLSTT  314 (892)
Q Consensus       249 ~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~l~  314 (892)
                                          +...... .+.+++.|++|.++.|..  .+|.   .+...+.|.+|++.
T Consensus       326 --------------------l~~~~~~-~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  326 --------------------LKNDCFQ-EFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             --------------------cCchHHH-HHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence                                1111222 556677777777777642  2333   24555667777666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.28  E-value=3.4e-08  Score=109.58  Aligned_cols=105  Identities=23%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      .++.|+|++|+++..-  .+..+++|++|||++|.+....-....+|. |+.|.+++|.++..  ..+.++.+|+.||++
T Consensus       188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLS  262 (1096)
T ss_pred             HhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchh
Confidence            4555666666655332  455555666666666665532222233333 56666666655442  234455556666666


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                      +|-+.+.---. .+..+..|+.|.|.+|.+-
T Consensus       263 yNll~~hseL~-pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  263 YNLLSEHSELE-PLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             Hhhhhcchhhh-HHHHHHHHHHHhhcCCccc
Confidence            66554322111 1133445555555555553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=4.6e-08  Score=108.54  Aligned_cols=127  Identities=27%  Similarity=0.269  Sum_probs=97.2

Q ss_pred             CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC--CCCCcc
Q 047519          339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS--SFPNLF  416 (892)
Q Consensus       339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~  416 (892)
                      -.|...+.++|.+. .+..++.-++.|+.|+|++|+++..   +.+..+++|++|||++|.+..   +|...  .+. |+
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~---vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRH---VPQLSMVGCK-LQ  235 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhcc---ccccchhhhh-he
Confidence            35777888888887 5667788889999999999998744   467889999999999996543   33332  333 99


Q ss_pred             EEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCC-chhhhhhCCCcccEEEccCCCCCC
Q 047519          417 GLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRI-SSWMWDLGITALYYLDLSNNFLTN  476 (892)
Q Consensus       417 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~~L~~L~Ls~n~l~~  476 (892)
                      .|.+++|.++++ ..+.++.+|+.||+++|-|.+.- -..++.+  ..|+.|.|.+|++--
T Consensus       236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsL--s~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSL--SSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHH--HHHHHHhhcCCcccc
Confidence            999999999877 45788999999999999887532 1234555  788899999988754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.7e-08  Score=100.67  Aligned_cols=160  Identities=9%  Similarity=-0.013  Sum_probs=75.4

Q ss_pred             ccccCCCCCEEEcccCCCCCcCCccccCCCCcceec----ccceeecChhhhcCCCCCcEEEccCCCCCcCCCcc-ccC-
Q 047519          231 DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG----QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINW-KST-  304 (892)
Q Consensus       231 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~----~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~-  304 (892)
                      -+..|.+|+.|.+.++++...+...+++-.+|+.|+    +.++..-..--+.+++.|..|++++|.+....... +.. 
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi  284 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI  284 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence            345667777777777766666655555555555555    22222111113456667777777776654432111 111 


Q ss_pred             CCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCc-CCcCCCccccCCCCCCEEECcCCcCCCccCh--
Q 047519          305 LQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQ-LSGSIPSSVYELENLILLRLPSNRLSGTTEL--  381 (892)
Q Consensus       305 l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--  381 (892)
                      -++|+.|+++++..|-....+..+      ...+++|.+|||+.|. ++......|.+++.|++|.++.|..  .+|.  
T Consensus       285 se~l~~LNlsG~rrnl~~sh~~tL------~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~  356 (419)
T KOG2120|consen  285 SETLTQLNLSGYRRNLQKSHLSTL------VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL  356 (419)
T ss_pred             chhhhhhhhhhhHhhhhhhHHHHH------HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe
Confidence            135666666622111111111100      1455666666666542 2322233444555566665555542  1220  


Q ss_pred             hhcCCCCCCCEEEcccC
Q 047519          382 YDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       382 ~~~~~l~~L~~L~Ls~n  398 (892)
                      -.+...|.|.+|++.++
T Consensus       357 ~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeccCcceEEEEeccc
Confidence            12334455555555444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=5.8e-08  Score=85.98  Aligned_cols=87  Identities=28%  Similarity=0.381  Sum_probs=51.4

Q ss_pred             hheeeecCCCcCCCCChhhhc-CccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEE
Q 047519          661 IFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  739 (892)
Q Consensus       661 ~L~~LdLs~N~l~~~~p~~~~-~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  739 (892)
                      .|+.++|++|.+. ..|+.|. ..+.++.|| |++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|..|+
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lN-l~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLN-LANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhh-cchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            3555666666666 3444443 334566666 6666666 55666666666666666666666 4555555566666666


Q ss_pred             CCCCcCcccCCCC
Q 047519          740 LSYNQFEGPIPQG  752 (892)
Q Consensus       740 ls~N~l~g~iP~~  752 (892)
                      ..+|... +||..
T Consensus       130 s~~na~~-eid~d  141 (177)
T KOG4579|consen  130 SPENARA-EIDVD  141 (177)
T ss_pred             CCCCccc-cCcHH
Confidence            6666654 45543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=5.1e-07  Score=89.25  Aligned_cols=191  Identities=10%  Similarity=-0.028  Sum_probs=96.8

Q ss_pred             CCCCCCEEecCCccCccccccc-----CCCCCCcccEEEccCCCCcCccC----ChhHHHHhhhcccccccccccccCCC
Q 047519          167 HDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIASK----SKDEIEKLKTQLNQEFEMKDLGEAKK  237 (892)
Q Consensus       167 ~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~~~----~p~~i~~l~~~~~~~~p~~~l~~l~~  237 (892)
                      -+..+..++||+|.+.......     ++-  .+|+..+++.-   ++|.    +|+.+.-+.         +.+.+|++
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~--~~L~vvnfsd~---ftgr~kde~~~~L~~Ll---------~aLlkcp~   93 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANV--RNLRVVNFSDA---FTGRDKDELYSNLVMLL---------KALLKCPR   93 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhh--cceeEeehhhh---hhcccHHHHHHHHHHHH---------HHHhcCCc
Confidence            4556666667766665443332     333  66666666653   3333    222222222         45667778


Q ss_pred             CCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCcc-------------ccC
Q 047519          238 ILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINW-------------KST  304 (892)
Q Consensus       238 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~-------------l~~  304 (892)
                      |+..+||.|.+....|+.++.                  .++.-+.|++|.+++|.+...--.-             ..+
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d------------------~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~  155 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGD------------------LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAAD  155 (388)
T ss_pred             ceeeeccccccCcccchHHHH------------------HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhcc
Confidence            888888877766555544331                  4566677777777777653211111             123


Q ss_pred             CCCCcEEecCccccccceeecc-----chhhhhhccCCCCCcCEEEccCCcCCcCCC-----ccccCCCCCCEEECcCCc
Q 047519          305 LQSTVVLSTTEAEYMAITKAVK-----EAIWLQVFVRGRRHYAEPHFSSNQLSGSIP-----SSVYELENLILLRLPSNR  374 (892)
Q Consensus       305 l~~L~~L~l~~~~~n~l~~~~p-----~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p-----~~l~~l~~L~~L~L~~n~  374 (892)
                      -|.|++....   .|++...-.     .+       ..-.+|+++.+.+|.|.-..-     ..+..+.+|++|||.+|-
T Consensus       156 kp~Le~vicg---rNRlengs~~~~a~~l-------~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         156 KPKLEVVICG---RNRLENGSKELSAALL-------ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             CCCceEEEec---cchhccCcHHHHHHHH-------HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            3556666665   665532111     12       222456666666665542110     122345566666666665


Q ss_pred             CCCccC---hhhcCCCCCCCEEEcccCC
Q 047519          375 LSGTTE---LYDFAKLKNLKWLFVSNNR  399 (892)
Q Consensus       375 l~~~~~---~~~~~~l~~L~~L~Ls~n~  399 (892)
                      ++..-.   ...+..++.|+.|.+.+|-
T Consensus       226 ft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         226 FTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             hhhhhHHHHHHHhcccchhhhccccchh
Confidence            542111   1233344555566655553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=8.5e-07  Score=88.83  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=45.3

Q ss_pred             CCCEEEccCCCCCCC-CCccccCCCCCcEEEccCCCCCCC-cchhccCCCCCCEEEccCCcCCCC----CCCCCCCcCCC
Q 047519          519 NLTNLNLNGNRLEGP-LPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILRSNRFWGP----IGDNTTIVPFP  592 (892)
Q Consensus       519 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~  592 (892)
                      ++..+-+..|.+... -...+..++.+..|+|+.|+|..- -.+.+.++++|..|.+++|++...    .+..+.++.++
T Consensus       200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~  279 (418)
T KOG2982|consen  200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT  279 (418)
T ss_pred             cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence            455555555554321 112344455566677777766541 123456677777777777776432    22333346677


Q ss_pred             CccEEEcC
Q 047519          593 RFRIIDLS  600 (892)
Q Consensus       593 ~L~~L~Ls  600 (892)
                      ++++|+=+
T Consensus       280 ~v~vLNGs  287 (418)
T KOG2982|consen  280 KVQVLNGS  287 (418)
T ss_pred             ceEEecCc
Confidence            88877644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=1e-06  Score=88.34  Aligned_cols=64  Identities=30%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             CCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcc--hhhhCCCCccEEEccCCCCCC
Q 047519          387 LKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIHG  450 (892)
Q Consensus       387 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~  450 (892)
                      +|++..+.+..|++.........-.+|.+.-|+|+.+++....  +.+..+++|..|.++++.+..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            3455555555554332222222224555556666666666332  456666777777777776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.79  E-value=3.2e-06  Score=75.21  Aligned_cols=81  Identities=25%  Similarity=0.395  Sum_probs=45.0

Q ss_pred             heeeecCCCcCCCCChhhhcC---ccccccccccCCCCCCCCcchhccC-CCCCCeeeCCCCcCCCCCccccCCCCCCCE
Q 047519          662 FMTIDLSSNKFQGGIPEVVGK---LNLLKGLNNISHNNLTGDIPSLLRN-LTEVESLDLSSNMLVGHIPTQLTSLKYLSV  737 (892)
Q Consensus       662 L~~LdLs~N~l~~~~p~~~~~---l~~L~~L~~Ls~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  737 (892)
                      +..+|||++.+. .+++....   ...|+..+ |++|.+. ..|..|.. .+.++.|+|++|.|+ .+|..++.++.|+.
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~-ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKIS-LSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEe-cccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            445666666554 44443332   33444445 6666666 33444433 345666666666666 55666666666666


Q ss_pred             EECCCCcCc
Q 047519          738 LNLSYNQFE  746 (892)
Q Consensus       738 L~ls~N~l~  746 (892)
                      +|+++|+|.
T Consensus       105 lNl~~N~l~  113 (177)
T KOG4579|consen  105 LNLRFNPLN  113 (177)
T ss_pred             cccccCccc
Confidence            666666665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.77  E-value=7.7e-07  Score=93.44  Aligned_cols=305  Identities=12%  Similarity=-0.021  Sum_probs=148.7

Q ss_pred             CCCCeEecCCCCCCCC-CCCCcCcCCCCCCeEeCCCCC-CccccCCCCCcccCCCCceecCCccc-CCcchhhhhhcccC
Q 047519           90 PHIRKLNLAFNDFNYS-EISSGFSQLRSLTLLNLSSSN-FMGSIPASIDLINVSRLSTNYLPIFA-FSDCFQLDVKTTFL  166 (892)
Q Consensus        90 ~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~Ls~n~-~~~~~p~~l~~~~L~~L~~L~Ls~~~-~~~~~p~~l~~~~~  166 (892)
                      -.|+.|.|.++.=.+. ++-.+-.+++++++|++.++. ++...-.+++. .|++|++|+|..+. ++...-+.++   .
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-~C~~l~~l~L~~c~~iT~~~Lk~la---~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-YCRKLRHLNLHSCSSITDVSLKYLA---E  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-hcchhhhhhhcccchhHHHHHHHHH---H
Confidence            3577788877753322 233456778899999888875 33322233432 78889999987722 2333333222   2


Q ss_pred             CCCCCCEEecCCcc-Cccccccc--CCCCCCcccEEEccCCCCcCccCChh-HHHHhhhcccccccccccccCCCCCEEE
Q 047519          167 HDDLEEEIYMTQLD-GFKVAEKE--NWLQEESFIYLLLHVDDMEIASKSKD-EIEKLKTQLNQEFEMKDLGEAKKILGME  242 (892)
Q Consensus       167 ~l~~L~~L~L~~~~-~~~~~~~~--~~l~~~~L~~L~Ls~n~~~l~~~~p~-~i~~l~~~~~~~~p~~~l~~l~~L~~L~  242 (892)
                      .+++|++|++++|. +.+..-..  .++  ..++.+.+.+|  .   ..+. .+.            ..=+.+..+..++
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~--~~l~~~~~kGC--~---e~~le~l~------------~~~~~~~~i~~ln  274 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGC--KELEKLSLKGC--L---ELELEALL------------KAAAYCLEILKLN  274 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccc--hhhhhhhhccc--c---cccHHHHH------------HHhccChHhhccc
Confidence            78899999999986 34422222  555  66777766666  1   1110 010            1112345566666


Q ss_pred             cccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCC-ccc-cCCCCCcEEecCcccccc
Q 047519          243 ICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPI-NWK-STLQSTVVLSTTEAEYMA  320 (892)
Q Consensus       243 L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~L~l~~~~~n~  320 (892)
                      +..|.......  +.                 . .-..+..|++|..+++...+..+ ..+ .+..+|+.|.++   .|+
T Consensus       275 l~~c~~lTD~~--~~-----------------~-i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~---~c~  331 (483)
T KOG4341|consen  275 LQHCNQLTDED--LW-----------------L-IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS---GCQ  331 (483)
T ss_pred             hhhhccccchH--HH-----------------H-HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc---ccc
Confidence            66653211100  00                 0 11234455555555544322111 111 234555555555   443


Q ss_pred             ceeeccchhhhhhccCCCCCcCEEEccCCcCCc--CCCccccCCCCCCEEECcCCcCCCccCh----hhcCCCCCCCEEE
Q 047519          321 ITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSG--SIPSSVYELENLILLRLPSNRLSGTTEL----YDFAKLKNLKWLF  394 (892)
Q Consensus       321 l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~  394 (892)
                      --+..- +   .....+++.|+.+++..+....  .+...-.+++.|++|.++++........    ..-..+..|+.+.
T Consensus       332 ~fsd~~-f---t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE  407 (483)
T KOG4341|consen  332 QFSDRG-F---TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE  407 (483)
T ss_pred             hhhhhh-h---hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence            211111 0   0001455666666666554321  1112223556667776666643211100    1113355667777


Q ss_pred             cccCCCCCCccccCCCCCCCccEEEccCCCCC---CcchhhhCCCCccEEEcc
Q 047519          395 VSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS---EFPDILRTLHQLQWFNLS  444 (892)
Q Consensus       395 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls  444 (892)
                      |++++............+++|+.+++..++-.   .+...-..+|+++..-+-
T Consensus       408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence            77763222222222225667777777766432   333445567777665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.74  E-value=7.9e-06  Score=81.03  Aligned_cols=22  Identities=9%  Similarity=0.253  Sum_probs=15.7

Q ss_pred             ccccCCCCCEEEcccCCCCCcC
Q 047519          231 DLGEAKKILGMEICRNRTCGKT  252 (892)
Q Consensus       231 ~l~~l~~L~~L~L~~n~~~~~~  252 (892)
                      .+..+..+..++||+|.+...-
T Consensus        25 el~~~d~~~evdLSGNtigtEA   46 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEA   46 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHH
Confidence            4445778888999988776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=2.4e-05  Score=56.47  Aligned_cols=36  Identities=42%  Similarity=0.653  Sum_probs=16.6

Q ss_pred             CCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCc
Q 047519          710 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  746 (892)
Q Consensus       710 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  746 (892)
                      +|++|++++|+|+ .+|..+.+|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 34444455555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=6.1e-05  Score=54.39  Aligned_cols=37  Identities=41%  Similarity=0.500  Sum_probs=29.1

Q ss_pred             CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC
Q 047519          413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH  449 (892)
Q Consensus       413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  449 (892)
                      ++|++|++++|+++.+|..++++++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4678888888888888877888888888888888887

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00022  Score=77.37  Aligned_cols=75  Identities=13%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519          516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR  595 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  595 (892)
                      .+.+++.|++++|.++ .+|.   -..+|++|.++++.-...+|+.+  .++|+.|++++|.....+|        ++|+
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cccc
Confidence            3456677777777666 4441   22357777776644334455433  2467777777663212222        2355


Q ss_pred             EEEcCCCCC
Q 047519          596 IIDLSHNEF  604 (892)
Q Consensus       596 ~L~Ls~N~l  604 (892)
                      .|+++.|..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.58  E-value=0.0002  Score=77.70  Aligned_cols=55  Identities=15%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             CCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCC-CCCCcchhhhCCCCccEEEccCC
Q 047519          385 AKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSAC-NISEFPDILRTLHQLQWFNLSKN  446 (892)
Q Consensus       385 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~Ls~n  446 (892)
                      ..+.+++.|++++|.+..   +|.  -.++|++|.+++| .++.+|+.+  .++|++|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L~s---LP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIES---LPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc---cCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            345666677777663221   121  1234666666653 344555433  235666666655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.49  E-value=0.00014  Score=69.58  Aligned_cols=106  Identities=24%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519          339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL  418 (892)
Q Consensus       339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  418 (892)
                      .+...+||++|.+...  ..|..+++|.+|.+.+|+|+..-| ..-..+++|+.|.|.+|.|.-.+.+.....+|.|++|
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3455666666666421  345566777777777777764433 4444566677777777755555555555566677777


Q ss_pred             EccCCCCCCcc----hhhhCCCCccEEEccCCC
Q 047519          419 GLSACNISEFP----DILRTLHQLQWFNLSKNR  447 (892)
Q Consensus       419 ~L~~n~l~~lp----~~l~~l~~L~~L~Ls~n~  447 (892)
                      .+-+|..+.-+    ..+..+|+|+.||..+-.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77777666333    245667777777776543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.47  E-value=3.6e-06  Score=88.55  Aligned_cols=107  Identities=13%  Similarity=-0.018  Sum_probs=49.2

Q ss_pred             CCcEEEccCCCCCcCC--CccccCCCCCcEEecCccccccceeecc--chhhhhhccCCCCCcCEEEccCC-cCCcCCCc
Q 047519          283 KRRSITGYVFNFAGGP--INWKSTLQSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRGRRHYAEPHFSSN-QLSGSIPS  357 (892)
Q Consensus       283 ~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~l~~L~~L~Ls~n-~l~~~~p~  357 (892)
                      .|+.|.+.++.-.+.-  -....++++++.|.+.   ++.......  .+      ...+++|+.|++..+ .++...-.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~---gc~~iTd~s~~sl------a~~C~~l~~l~L~~c~~iT~~~Lk  209 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALY---GCKKITDSSLLSL------ARYCRKLRHLNLHSCSSITDVSLK  209 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhh---cceeccHHHHHHH------HHhcchhhhhhhcccchhHHHHHH
Confidence            4677777776543321  1233456677777666   554222111  11      034566666666653 33322222


Q ss_pred             c-ccCCCCCCEEECcCCc-CCCccChhhcCCCCCCCEEEcccC
Q 047519          358 S-VYELENLILLRLPSNR-LSGTTELYDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       358 ~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n  398 (892)
                      . ...+++|++|+++.+. +++.--...+.++..++.+.+.+|
T Consensus       210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC  252 (483)
T KOG4341|consen  210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC  252 (483)
T ss_pred             HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence            1 1245566666666553 222111122344444555544444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.27  E-value=0.00045  Score=66.18  Aligned_cols=109  Identities=16%  Similarity=0.154  Sum_probs=75.7

Q ss_pred             CCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcC
Q 047519          306 QSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFA  385 (892)
Q Consensus       306 ~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  385 (892)
                      .....+|++   +|.+. .++.|       ..++.|.+|.+.+|+|+..-|.--.-+++|+.|.|.+|.|.......-+.
T Consensus        42 d~~d~iDLt---dNdl~-~l~~l-------p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa  110 (233)
T KOG1644|consen   42 DQFDAIDLT---DNDLR-KLDNL-------PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA  110 (233)
T ss_pred             cccceeccc---ccchh-hcccC-------CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence            356677777   77663 34455       77888888899999888666654455678999999999887544445577


Q ss_pred             CCCCCCEEEcccCCCCCCccccCCC--CCCCccEEEccCCCC
Q 047519          386 KLKNLKWLFVSNNRLSLSTKLKVNS--SFPNLFGLGLSACNI  425 (892)
Q Consensus       386 ~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l  425 (892)
                      .+|+|++|.+-+|++.-........  .+|+|+.||+..-..
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            8889999999988543222221111  688999998876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.17  E-value=0.00012  Score=86.44  Aligned_cols=46  Identities=15%  Similarity=0.042  Sum_probs=28.0

Q ss_pred             hhcCCCCCcEEEccCCCCCcCC--C----ccccCCCCCcEEecCccccccceeec
Q 047519          277 YIGDLDKRRSITGYVFNFAGGP--I----NWKSTLQSTVVLSTTEAEYMAITKAV  325 (892)
Q Consensus       277 ~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~l~~~~~n~l~~~~  325 (892)
                      .+.++++|++||+|........  .    +.-..+|+|+.||.+   +..+...+
T Consensus       215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS---gTdi~~~~  266 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS---GTDINEEI  266 (699)
T ss_pred             HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC---CcchhHHH
Confidence            4567777777777776544321  1    122347788888888   66665443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.01  E-value=0.0004  Score=82.07  Aligned_cols=135  Identities=17%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             eEEEEECCCCCCC-CCCCCCCCcc-CCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCC
Q 047519           65 HVIGLDLSCSWLH-GNIPSNSSLF-FLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSR  142 (892)
Q Consensus        65 ~v~~L~L~~~~l~-g~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~  142 (892)
                      ....||++|.... ..++.  .++ .|++|+.|.+++-.+....+-....++++|+.||+|+++++. + ..++  +|++
T Consensus       123 nL~~LdI~G~~~~s~~W~~--kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS--~Lkn  196 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPK--KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGIS--RLKN  196 (699)
T ss_pred             hhhhcCccccchhhccHHH--HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHh--cccc
Confidence            3666777764422 22332  333 489999999999888665344556789999999999999873 3 5678  9999


Q ss_pred             CceecCCc-ccCCcchhhhhhcccCCCCCCCEEecCCccCcccc--cc----c-CCCCCCcccEEEccCCCCcCccCCh
Q 047519          143 LSTNYLPI-FAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVA--EK----E-NWLQEESFIYLLLHVDDMEIASKSK  213 (892)
Q Consensus       143 L~~L~Ls~-~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~--~~----~-~~l~~~~L~~L~Ls~n~~~l~~~~p  213 (892)
                      |++|.+.+ .+....--..+.    +|++|++||+|........  ..    . ..|  |+|+.||.|++  .+...+-
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF----~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L--peLrfLDcSgT--di~~~~l  267 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLF----NLKKLRVLDISRDKNNDDTKIIEQYLECGMVL--PELRFLDCSGT--DINEEIL  267 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHh----cccCCCeeeccccccccchHHHHHHHHhcccC--ccccEEecCCc--chhHHHH
Confidence            99999987 332223334556    8999999999997654443  11    1 568  99999999999  7765543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.88  E-value=0.00057  Score=68.42  Aligned_cols=18  Identities=22%  Similarity=0.388  Sum_probs=8.7

Q ss_pred             hhCCCCccEEEccCCCCC
Q 047519          432 LRTLHQLQWFNLSKNRIH  449 (892)
Q Consensus       432 l~~l~~L~~L~Ls~n~l~  449 (892)
                      +..+.+|..|++.+|..+
T Consensus       112 l~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhhcchhhhhcccCCcc
Confidence            334444555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.0014  Score=65.78  Aligned_cols=104  Identities=24%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCC--cCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCC
Q 047519          337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSN--RLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPN  414 (892)
Q Consensus       337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  414 (892)
                      .+..|+.+++.+..++..  ..+..+++|+.|.++.|  ++.+.++ .....+++|++|++++|++.....++....+.+
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            344555555555555421  23445666677777776  4444333 223344677777777775554444444445666


Q ss_pred             ccEEEccCCCCCCcc----hhhhCCCCccEEEc
Q 047519          415 LFGLGLSACNISEFP----DILRTLHQLQWFNL  443 (892)
Q Consensus       415 L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L  443 (892)
                      |..|++.+|..+.+-    ..|.-+++|++||-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            666666666554322    23444555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.10  E-value=0.015  Score=53.65  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=49.9

Q ss_pred             CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEE
Q 047519          493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI  572 (892)
Q Consensus       493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  572 (892)
                      |.+|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......|..+++|+.+.
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            33555555553 344344455666667777777664 5544445667776777777755 44333345566677777777


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhh
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA  618 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  618 (892)
                      +..+ +.......+  ... .|+.+.+.. .++ .++...|.+++.
T Consensus        88 ~~~~-~~~i~~~~f--~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~  127 (129)
T PF13306_consen   88 IPSN-ITEIGSSSF--SNC-NLKEINIPS-NIT-KIEENAFKNCTK  127 (129)
T ss_dssp             ETTT--BEEHTTTT--TT--T--EEE-TT-B-S-S----GGG----
T ss_pred             cCcc-ccEEchhhh--cCC-CceEEEECC-Ccc-EECCcccccccc
Confidence            7654 322222222  444 667776665 333 334444554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.79  E-value=0.02  Score=52.67  Aligned_cols=13  Identities=38%  Similarity=0.718  Sum_probs=5.1

Q ss_pred             ccCCCCCCEEEcc
Q 047519          514 FVNSCNLTNLNLN  526 (892)
Q Consensus       514 ~~~l~~L~~L~L~  526 (892)
                      |..+++|+.+++.
T Consensus        77 F~~~~~l~~i~~~   89 (129)
T PF13306_consen   77 FSNCTNLKNIDIP   89 (129)
T ss_dssp             TTT-TTECEEEET
T ss_pred             ccccccccccccC
Confidence            3334444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.00061  Score=68.26  Aligned_cols=60  Identities=22%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC
Q 047519          337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  398 (892)
                      .++.|+.|.||-|+|+..-  .+..+++|++|+|..|.|...-....+.++++|+.|-|..|
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            3444555555555554322  24455555555555555554333334455555555555555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.00059  Score=68.34  Aligned_cols=97  Identities=25%  Similarity=0.180  Sum_probs=50.4

Q ss_pred             CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcc--hhhhCCCCccEE
Q 047519          364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP--DILRTLHQLQWF  441 (892)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L  441 (892)
                      +.+.|+..++.+.+.   ....+|+.|+.|.|+-|+|.  . ......+++|++|+|..|.|..+.  ..+.++|+|+.|
T Consensus        20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs--s-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS--S-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCccHH---HHHHhcccceeEEeeccccc--c-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            334444444444321   23344555555555555221  1 111114555555555555555443  356778888888


Q ss_pred             EccCCCCCCCCchh-----hhhhCCCcccEEE
Q 047519          442 NLSKNRIHGRISSW-----MWDLGITALYYLD  468 (892)
Q Consensus       442 ~Ls~n~l~~~~~~~-----~~~l~~~~L~~L~  468 (892)
                      .|..|.-.|.-+..     +..+  |+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~L--PnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVL--PNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHc--ccchhcc
Confidence            88888776655432     3344  7777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.08  E-value=0.0064  Score=36.47  Aligned_cols=19  Identities=47%  Similarity=0.719  Sum_probs=9.1

Q ss_pred             CCeeeCCCCcCCCCCccccC
Q 047519          711 VESLDLSSNMLVGHIPTQLT  730 (892)
Q Consensus       711 L~~L~Ls~N~l~~~ip~~l~  730 (892)
                      |++|||++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.81  E-value=0.011  Score=35.51  Aligned_cols=20  Identities=45%  Similarity=0.705  Sum_probs=12.4

Q ss_pred             CCCeEeCCCCCCccccCCCCC
Q 047519          116 SLTLLNLSSSNFMGSIPASID  136 (892)
Q Consensus       116 ~L~~L~Ls~n~~~~~~p~~l~  136 (892)
                      +|++|||++|+++ .+|+.|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3566666666666 5666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.51  E-value=0.00029  Score=79.62  Aligned_cols=187  Identities=18%  Similarity=0.129  Sum_probs=104.4

Q ss_pred             CCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCC----ccccCC-CCCcE
Q 047519          236 KKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPI----NWKSTL-QSTVV  310 (892)
Q Consensus       236 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~  310 (892)
                      ..+..|.|.+|.+.......++                 . .+...+.|+.|++++|.+.+.--    ..+... ..+++
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~-----------------~-~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~  148 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELA-----------------Q-ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQT  148 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHH-----------------H-HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHH
Confidence            3477788888866543322221                 2 56677888888888888874311    122222 45666


Q ss_pred             EecCccccccceeecc-----chhhhhhccCCCCCcCEEEccCCcCCc----CCCccc----cCCCCCCEEECcCCcCCC
Q 047519          311 LSTTEAEYMAITKAVK-----EAIWLQVFVRGRRHYAEPHFSSNQLSG----SIPSSV----YELENLILLRLPSNRLSG  377 (892)
Q Consensus       311 L~l~~~~~n~l~~~~p-----~l~~l~l~~~~l~~L~~L~Ls~n~l~~----~~p~~l----~~l~~L~~L~L~~n~l~~  377 (892)
                      |++.   .|.+++.--     .+       .....+++++++.|.+..    .++..+    ....++++|.+.+|.++.
T Consensus       149 L~l~---~c~l~~~g~~~l~~~L-------~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~  218 (478)
T KOG4308|consen  149 LELV---SCSLTSEGAAPLAAVL-------EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS  218 (478)
T ss_pred             HHhh---cccccccchHHHHHHH-------hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence            7777   666654322     44       457778888888887631    122222    246677778887777652


Q ss_pred             ccC---hhhcCCCCC-CCEEEcccCCCCCCcccc---CCCCC-CCccEEEccCCCCC-----CcchhhhCCCCccEEEcc
Q 047519          378 TTE---LYDFAKLKN-LKWLFVSNNRLSLSTKLK---VNSSF-PNLFGLGLSACNIS-----EFPDILRTLHQLQWFNLS  444 (892)
Q Consensus       378 ~~~---~~~~~~l~~-L~~L~Ls~n~l~~~~~~~---~~~~l-~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls  444 (892)
                      ..-   ...+...+. +..|++..|.+...+...   ....+ +.++.++++.|.++     .+.+.+..++.++++.++
T Consensus       219 ~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~  298 (478)
T KOG4308|consen  219 SSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLS  298 (478)
T ss_pred             HHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcc
Confidence            110   023344444 566777777433222111   11122 45566777777666     234455556667777777


Q ss_pred             CCCCCC
Q 047519          445 KNRIHG  450 (892)
Q Consensus       445 ~n~l~~  450 (892)
                      +|.+..
T Consensus       299 ~n~l~~  304 (478)
T KOG4308|consen  299 NNPLTD  304 (478)
T ss_pred             cCcccc
Confidence            776653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.24  E-value=0.0064  Score=70.42  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=18.1

Q ss_pred             CCCccEEEccCCC-CC--CcchhhhCCCCccEEEccCCCC
Q 047519          412 FPNLFGLGLSACN-IS--EFPDILRTLHQLQWFNLSKNRI  448 (892)
Q Consensus       412 l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~Ls~n~l  448 (892)
                      +++|+.|.+.+|. ++  .+-.....++.|++|+++++..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4445555444443 33  2333444555566666665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.01  E-value=0.0056  Score=70.92  Aligned_cols=34  Identities=3%  Similarity=-0.242  Sum_probs=16.9

Q ss_pred             CCCCcEEEccCCCCCcC--CCccccCCCCCcEEecC
Q 047519          281 LDKRRSITGYVFNFAGG--PINWKSTLQSTVVLSTT  314 (892)
Q Consensus       281 l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l~  314 (892)
                      ++.|+.|.+..+.-...  +-.....++.|+.|+++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  222 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS  222 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheeccc
Confidence            55666666665533222  12233445566666665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.00  E-value=0.012  Score=57.84  Aligned_cols=84  Identities=18%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      ....+.||++.|++. ..-..|.-++.|..|+ ++.|++. ..|..++++..+..+++..|..+ ..|.++...+.++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~-~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLD-LSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHh-ccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            456778999999886 4555677788888998 9999998 88888999999999999999988 788999999999999


Q ss_pred             ECCCCcCc
Q 047519          739 NLSYNQFE  746 (892)
Q Consensus       739 ~ls~N~l~  746 (892)
                      ++-.|.|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99999875

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.49  E-value=0.13  Score=28.55  Aligned_cols=16  Identities=38%  Similarity=0.544  Sum_probs=5.9

Q ss_pred             CccEEEccCCCCCCcc
Q 047519          414 NLFGLGLSACNISEFP  429 (892)
Q Consensus       414 ~L~~L~L~~n~l~~lp  429 (892)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.56  E-value=0.17  Score=28.15  Aligned_cols=13  Identities=46%  Similarity=0.680  Sum_probs=4.6

Q ss_pred             CCCeeeCCCCcCC
Q 047519          710 EVESLDLSSNMLV  722 (892)
Q Consensus       710 ~L~~L~Ls~N~l~  722 (892)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.55  E-value=0.007  Score=68.57  Aligned_cols=20  Identities=0%  Similarity=-0.139  Sum_probs=13.6

Q ss_pred             hhcCCCCCcEEEccCCCCCc
Q 047519          277 YIGDLDKRRSITGYVFNFAG  296 (892)
Q Consensus       277 ~l~~l~~L~~L~L~~n~l~~  296 (892)
                      .+..+++++++.++.|.+..
T Consensus       285 ~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  285 VLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHhhhHHHHHhhcccCcccc
Confidence            55566677777777776654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.52  E-value=0.012  Score=57.81  Aligned_cols=81  Identities=20%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519           64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL  143 (892)
Q Consensus        64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L  143 (892)
                      .||+.||++.+.+... ..  .+.-++.|..||++-|.+.-  +|..++.+..++++++..|..+ ..|.+++  .++++
T Consensus        42 kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~--k~~~~  113 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQK--KEPHP  113 (326)
T ss_pred             ceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCcccc--ccCCc
Confidence            4899999998877633 22  46778889999999988876  7888999999999999888776 7898888  88888


Q ss_pred             ceecCCccc
Q 047519          144 STNYLPIFA  152 (892)
Q Consensus       144 ~~L~Ls~~~  152 (892)
                      +++++..+.
T Consensus       114 k~~e~k~~~  122 (326)
T KOG0473|consen  114 KKNEQKKTE  122 (326)
T ss_pred             chhhhccCc
Confidence            888887644

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.57  E-value=0.67  Score=28.90  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=8.5

Q ss_pred             CCCCeeeCCCCcCC
Q 047519          709 TEVESLDLSSNMLV  722 (892)
Q Consensus       709 ~~L~~L~Ls~N~l~  722 (892)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.57  E-value=0.67  Score=28.90  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=8.5

Q ss_pred             CCCCeeeCCCCcCC
Q 047519          709 TEVESLDLSSNMLV  722 (892)
Q Consensus       709 ~~L~~L~Ls~N~l~  722 (892)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45666666666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.20  E-value=0.25  Score=47.96  Aligned_cols=81  Identities=17%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC-cccc-CCCCCcEEEccCC-CCCCCcchhccCCCCCCEE
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP-LSLV-NCHHLEVLDVGNN-QINDNFPNWLEILPELQVL  571 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~-~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L  571 (892)
                      .++.+|.++..|..+.-+.+.+++.++.|.+.+|.--+... +.+. -.++|+.|+|++| +|++..-.++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            67788888888877766777788888888888775332110 0111 2468888888877 6777666777788888888


Q ss_pred             EccC
Q 047519          572 ILRS  575 (892)
Q Consensus       572 ~L~~  575 (892)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=80.90  E-value=1.6  Score=27.19  Aligned_cols=16  Identities=38%  Similarity=0.522  Sum_probs=8.9

Q ss_pred             CCCcEEEccCCCCCCC
Q 047519          542 HHLEVLDVGNNQINDN  557 (892)
Q Consensus       542 ~~L~~L~L~~N~l~~~  557 (892)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555566666655553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=80.90  E-value=1.6  Score=27.19  Aligned_cols=16  Identities=38%  Similarity=0.522  Sum_probs=8.9

Q ss_pred             CCCcEEEccCCCCCCC
Q 047519          542 HHLEVLDVGNNQINDN  557 (892)
Q Consensus       542 ~~L~~L~L~~N~l~~~  557 (892)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555566666655553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	892
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-22
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-22
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-09

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 191/466 (40%), Gaps = 58/466 (12%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            S N   G++P        L  L L SN  SG   +    K++ LK L +S N  S    
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQ-----LQWFNLSKNRIHGRISSWMWDLG 460
             + +   +L  L LS+ N S    IL  L Q     LQ   L  N   G+I   + +  
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-- 416
Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM--NNFNGKISQKFVXXX 518
            + L  L LS N+L+      P+++  L+       K+ D+++  N   G+I Q+ +   
Sbjct: 417 CSELVSLHLSFNYLSGTI---PSSLGSLS-------KLRDLKLWLNMLEGEIPQELMYVK 466
Query: 519 XXXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
                              L NC +L  + + NN++    P W+  L  L +L L +N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 579 WGPI----GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYL--------------------- 613
            G I    GD  +++       +DL+ N F G +P                         
Sbjct: 527 SGNIPAELGDCRSLI------WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 614 DNFKAMMHGNNNSVEV-----DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLS 668
           D  K   HG  N +E      + +  L++ N          G            M +D+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 669 SNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728
            N   G IP+ +           + HN+++G IP  + +L  +  LDLSSN L G IP  
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 729 LTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL 774
           +++L  L+ ++LS N   GPIP+  QF TF    ++ N GLCG+PL
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 191/466 (40%), Gaps = 58/466 (12%)
Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            S N   G++P        L  L L SN  SG   +    K++ LK L +S N  S    
Sbjct: 298 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQ-----LQWFNLSKNRIHGRISSWMWDLG 460
             + +   +L  L LS+ N S    IL  L Q     LQ   L  N   G+I   + +  
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-- 413
Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM--NNFNGKISQKFVXXX 518
            + L  L LS N+L+      P+++  L+       K+ D+++  N   G+I Q+ +   
Sbjct: 414 CSELVSLHLSFNYLSGTI---PSSLGSLS-------KLRDLKLWLNMLEGEIPQELMYVK 463
Query: 519 XXXXXXXXXXXXXXXXXXSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
                              L NC +L  + + NN++    P W+  L  L +L L +N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 579 WGPI----GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYL--------------------- 613
            G I    GD  +++       +DL+ N F G +P                         
Sbjct: 524 SGNIPAELGDCRSLI------WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 614 DNFKAMMHGNNNSVEV-----DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLS 668
           D  K   HG  N +E      + +  L++ N          G            M +D+S
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 669 SNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728
            N   G IP+ +           + HN+++G IP  + +L  +  LDLSSN L G IP  
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 729 LTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL 774
           +++L  L+ ++LS N   GPIP+  QF TF    ++ N GLCG+PL
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 19/248 (7%)
Query: 537 SLVNCHHLEVLDVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595
           SL N  +L  L +G  N +    P  +  L +L  L +      G I D  + +      
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK--TLV 128
Query: 596 IIDLSHNEFTGVLPTGY--LDNFKAMMHGNN---NSVEVDYMTPLNSSNYYESIILTIKG 650
            +D S+N  +G LP     L N   +    N    ++   Y +    S  + S+ ++   
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNR 185
Query: 651 IDIQIERILTIF--MTIDLSSNKFQGGIPEVVXXXXXXXXXXXISHNNLTGDIP--SLLR 706
           +  +I           +DLS N  +G    V+           ++ N+L  D+    L +
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGN 766
           NL     LDL +N + G +P  LT LK+L  LN+S+N   G IPQG     F   +Y  N
Sbjct: 245 NL---NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 767 SGLCGFPL 774
             LCG PL
Sbjct: 302 KCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	892
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-112
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-34
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  361 bits (930), Expect = e-112
 Identities = 128/470 (27%), Positives = 194/470 (41%), Gaps = 44/470 (9%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N   G++P        L  L L SN  SG   +    K++ LK L +S N  S   
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

Query: 405 KLKVNSSFPNLFGLGLSACNIS-EFPDIL--RTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
              + +   +L  L LS+ N S      L     + LQ   L  N   G+I   + +   
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-- 417

Query: 462 TALYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
           + L  L LS N+L+  I    P+++  L   S L    L + +N   G+I Q+ +    L
Sbjct: 418 SELVSLHLSFNYLSGTI----PSSLGSL---SKLR--DLKLWLNMLEGEIPQELMYVKTL 468

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
             L L+ N L G +P  L NC +L  + + NN++    P W+  L  L +L L +N F G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 581 PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM-------------------- 620
            I     +        +DL+ N F G +P         +                     
Sbjct: 529 NIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586

Query: 621 -HGNNNSVEVDYMTPLNSSNYYESIIL-----TIKGIDIQIERILTIFMTIDLSSNKFQG 674
            HG  N +E   +     +                G            M +D+S N   G
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646

Query: 675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734
            IP+ +G +  L  LN + HN+++G IP  + +L  +  LDLSSN L G IP  +++L  
Sbjct: 647 YIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 735 LSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESCNIDEAP 784
           L+ ++LS N   GPIP+  QF TF    ++ N GLCG+PL      +   
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  225 bits (576), Expect = 1e-62
 Identities = 111/416 (26%), Positives = 168/416 (40%), Gaps = 72/416 (17%)

Query: 345 HFSSNQLSGSIP-SSVYELENLILLRLPSNRLSGT--TELYDFAKLKNLKWLFVSNNRLS 401
           + SSN L      S   +L +L +L L +N +SG              LK L +S N++S
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 402 LSTKLKVNSSFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
               +   S   NL  L +S+ N S   P +      LQ  ++S N++ G  S  +    
Sbjct: 192 GDVDV---SRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGDFSRAISTC- 246

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC-N 519
            T L  L++S+N        PP  +  L        + L +  N F G+I      +C  
Sbjct: 247 -TELKLLNISSNQFVGP--IPPLPLKSL--------QYLSLAENKFTGEIPDFLSGACDT 295

Query: 520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNRF 578
           LT L+L+GN   G +P    +C  LE L + +N  +   P + L  +  L+VL L  N F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 579 WGPIGD---NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL 635
            G + +   N +         +DLS N F+G +      N K  +               
Sbjct: 356 SGELPESLTNLS----ASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-------------- 397

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN 695
                                        + L +N F G IP  +   + L  L ++S N
Sbjct: 398 ----------------------------ELYLQNNGFTGKIPPTLSNCSELVSL-HLSFN 428

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
            L+G IPS L +L+++  L L  NML G IP +L  +K L  L L +N   G IP 
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  208 bits (532), Expect = 8e-57
 Identities = 109/420 (25%), Positives = 179/420 (42%), Gaps = 52/420 (12%)

Query: 345 HFSSNQLS---GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS 401
             SS  L+    ++ SS+  L  L  L L ++ ++G+  +  F    +L  L +S N LS
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLS 113

Query: 402 LS-TKLKVNSSFPNLFGLGLSACNIS---EFPDILRTLHQLQWFNLSKNRIHGRISSWMW 457
              T L    S   L  L +S+  +    +    L+ L+ L+  +LS N I G       
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWV 172

Query: 458 DLG-ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVN 516
                  L +L +S N ++       +    L        + LD+  NNF+  I     +
Sbjct: 173 LSDGCGELKHLAISGNKISGD--VDVSRCVNL--------EFLDVSSNNFSTGIPF-LGD 221

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
              L +L+++GN+L G    ++  C  L++L++ +NQ     P     L  LQ L L  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN 279

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
           +F G I D  +         +DLS N F G +P  +         G+ + +E   +    
Sbjct: 280 KFTGEIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFF---------GSCSLLESLAL---- 325

Query: 637 SSNYYESIILTIKGIDIQIERI--LTIFMTIDLSSNKFQGGIPEVVGKLNL-LKGLNNIS 693
           SSN          G  + ++ +  +     +DLS N+F G +PE +  L+  L  L ++S
Sbjct: 326 SSNN-------FSGE-LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL-DLS 376

Query: 694 HNNLTGDIPSLLRN--LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
            NN +G I   L       ++ L L +N   G IP  L++   L  L+LS+N   G IP 
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (411), Expect = 3e-41
 Identities = 78/349 (22%), Positives = 128/349 (36%), Gaps = 69/349 (19%)

Query: 414 NLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNF 473
           +L    L+    S     L +L  L+   LS + I+G +S +       +L  LDLS N 
Sbjct: 56  DLSSKPLNV-GFSAVSSSLLSLTGLESLFLSNSHINGSVSGF---KCSASLTSLDLSRNS 111

Query: 474 LTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIS-QKFVNSCNLTNLNLNGNRLE 531
           L+         +T L    + +  K L++  N  +        +   +L  L+L+ N + 
Sbjct: 112 LSGP--VTT--LTSL---GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 532 GPLPLSLV---NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI 588
           G   +  V    C  L+ L +  N+I+ +    +     L+ L + SN F   I     +
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF---L 219

Query: 589 VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648
                 + +D+S N+ +G                      +   T L             
Sbjct: 220 GDCSALQHLDISGNKLSGDFSR-----------------AISTCTELK------------ 250

Query: 649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP-SLLRN 707
                           +++SSN+F G IP     L  L+ L+ ++ N  TG+IP  L   
Sbjct: 251 ---------------LLNISSNQFVGPIPP--LPLKSLQYLS-LAENKFTGEIPDFLSGA 292

Query: 708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFN 756
              +  LDLS N   G +P    S   L  L LS N F G +P  +   
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (341), Expect = 9e-33
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 25/240 (10%)

Query: 515 VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574
           V S +L++  LN       +  SL++   LE L + N+ IN +   +      L  L L 
Sbjct: 52  VTSIDLSSKPLNVGF--SAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-SASLTSLDLS 108

Query: 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTP 634
            N   GP+   T++      + +++S N               ++               
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV------------- 155

Query: 635 LN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
           L+ S+N      +    +   +         + +S NK  G +   V +   L+ L+ +S
Sbjct: 156 LDLSANSISGANV----VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD-VS 208

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
            NN +  IP L  + + ++ LD+S N L G     +++   L +LN+S NQF GPIP   
Sbjct: 209 SNNFSTGIPFLG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (278), Expect = 4e-25
 Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 29/168 (17%)

Query: 2   SAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDT 61
           S     + +   L+ FK +   +                    W  + + C++DGVTC  
Sbjct: 5   SPSQSLYREIHQLISFKDVLPDKNLLPD---------------WSSNKNPCTFDGVTCRD 49

Query: 62  VAGHVIGLDLSCSWLHGNIPS-NSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLL 120
               V  +DLS   L+    + +SSL  L  +  L L+ +  N S   SGF    SLT L
Sbjct: 50  --DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSL 105

Query: 121 NLSSSNFMGSIPASIDLINVSRL-----STNYL----PIFAFSDCFQL 159
           +LS ++  G +     L + S L     S+N L     +        L
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.6 bits (184), Expect = 9e-14
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 664 TIDLSSNKFQGG---IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNM 720
           +IDLSS     G   +   +  L  L+ L  +S++++ G +         + SLDLS N 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLF-LSNSHINGSVSGFK-CSASLTSLDLSRNS 111

Query: 721 LVGHIPT--QLTSLKYLSVLNLSYNQFEGPIPQGSQFN 756
           L G + T   L S   L  LN+S N  + P        
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 2e-09
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 689 LNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 748
           L++   N     + S L +LT +ESL LS++ + G +         L+ L+LS N   GP
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP 115

Query: 749 IPQGSQFNTFRN 760
           +   +   +   
Sbjct: 116 VTTLTSLGSCSG 127

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LD+S +     IP    L     ++ L+++ N  +  + S   S    L LLN+SS+ F+
Sbjct: 205 LDVSSNNFSTGIPF---LGDCSALQHLDISGNKLS-GDFSRAISTCTELKLLNISSNQFV 260

Query: 129 GSIPASI 135
           G IP   
Sbjct: 261 GPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LDLS +   G I  N        +++L L  N F   +I    S    L  L+LS +   
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHLSFNYLS 431

Query: 129 GSIPASIDLINVSRLS 144
           G+IP+S  L ++S+L 
Sbjct: 432 GTIPSS--LGSLSKLR 445

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 64  GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLS 123
           G ++ LD+S + L G IP    +  +P++  LNL  ND +   I      LR L +L+LS
Sbjct: 632 GSMMFLDMSYNMLSGYIPK--EIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLS 688

Query: 124 SSNFMGSIPASI 135
           S+   G IP ++
Sbjct: 689 SNKLDGRIPQAM 700

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 6e-06
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L L  +   G IP   +L     +  L+L+FN  +   I S    L  L  L L  +   
Sbjct: 399 LYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLS-GTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 129 GSIPASI 135
           G IP  +
Sbjct: 456 GEIPQEL 462

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 6e-06
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L L  + L G IP    L ++  +  L L FND    EI SG S   +L  ++LS++   
Sbjct: 447 LKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLT 503

Query: 129 GSIPASI 135
           G IP  I
Sbjct: 504 GEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 69  LDLSCSWLHGNIPSNSSLF-FLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNF 127
           LDLS + + G       L      ++ L ++ N  +  ++    S+  +L  L++SS+NF
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS-GDVD--VSRCVNLEFLDVSSNNF 212

Query: 128 MGSIPASIDLINVS--RLSTNYL 148
              IP   D   +    +S N L
Sbjct: 213 STGIPFLGDCSALQHLDISGNKL 235

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L L+ +   G IP          +  L+L+ N F    +   F     L  L LSS+NF 
Sbjct: 274 LSLAENKFTGEIPD-FLSGACDTLTGLDLSGNHFY-GAVPPFFGSCSLLESLALSSNNFS 331

Query: 129 GSIPASI 135
           G +P   
Sbjct: 332 GELPMDT 338

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LDLS +  +G +P          +  L L+ N+F+         ++R L +L+LS + F 
Sbjct: 299 LDLSGNHFYGAVPP--FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 129 GSIPASI 135
           G +P S+
Sbjct: 357 GELPESL 363

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
            +++     G+     +      +  L++++N  +   I      +  L +LNL  ++  
Sbjct: 613 CNITSRVYGGHTSP--TFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDIS 669

Query: 129 GSIPASI 135
           GSIP  +
Sbjct: 670 GSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           + LS + L G IP    +  L ++  L L+ N F    I +     RSL  L+L+++ F 
Sbjct: 495 ISLSNNRLTGEIPK--WIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 129 GSIPASI 135
           G+IPA++
Sbjct: 552 GTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L LS ++L G IPS  SL  L  +R L L  N     EI      +++L  L L  ++  
Sbjct: 423 LHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLT 479

Query: 129 GSIPASI 135
           G IP+ +
Sbjct: 480 GEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLR-SLTLLNLSSSNF 127
           L LS +   G +P   +L  +  ++ L+L+FN+F+  E+    + L  SL  L+LSS+NF
Sbjct: 323 LALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFS-GELPESLTNLSASLLTLDLSSNNF 380

Query: 128 MGSIPASIDLINVSRLSTNYL 148
            G I  ++     + L   YL
Sbjct: 381 SGPILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 707 NLTEVESLDLSSNML---VGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQF 755
              +V S+DLSS  L      + + L SL  L  L LS +   G +      
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS 99

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 5e-05
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L++S +   G IP       L  ++ L+LA N F             +LT L+LS ++F 
Sbjct: 252 LNISSNQFVGPIPP----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 129 GSIPASI 135
           G++P   
Sbjct: 308 GAVPPFF 314

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 7e-04
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 67  IGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSN 126
             L+L  + + G+IP    +  L  +  L+L+ N  +   I    S L  LT ++LS++N
Sbjct: 659 FILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNN 715

Query: 127 FMGSIP 132
             G IP
Sbjct: 716 LSGPIP 721

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  218 bits (558), Expect = 7e-61
 Identities = 93/449 (20%), Positives = 169/449 (37%), Gaps = 42/449 (9%)

Query: 345 HFSSNQLSGSIPSSVYELE--NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS- 401
             S++QLS +  ++   L+  NL +L L  N L+       FA L  L++ F+  N +  
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNIQH 286

Query: 402 -------LSTKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRIS 453
                      ++  +   +     +S  ++ +  D   + L  L+  N+  N I G  S
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 454 SWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK 513
           +    L    L YL LSN+F  ++          L   S L   +L++  N  +   S  
Sbjct: 347 NMFTGL--INLKYLSLSNSFT-SLRTLTNETFVSLAH-SPL--HILNLTKNKISKIESDA 400

Query: 514 FVNSCNLTNLNLNGNRLEGPLPLS-LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
           F    +L  L+L  N +   L         ++  + +  N+      N   ++P LQ L+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
           LR           +   P     I+DLS+N     +    L+  + +             
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEI----------- 508

Query: 633 TPLN-SSNYYESIIL-TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690
             L+   N    +      G  I   + L+    ++L SN F     EV   L  LK ++
Sbjct: 509 --LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQFEGPI 749
            +  NNL     S+  N   ++SL+L  N++          + + L+ L++ +N F+   
Sbjct: 567 -LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 750 PQGSQFNTFRNDSYVGNSGL-----CGFP 773
              + F  + N+++     L     C  P
Sbjct: 626 ESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (481), Expect = 1e-50
 Identities = 85/428 (19%), Positives = 145/428 (33%), Gaps = 41/428 (9%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
             N+LS     +     NL  L L SN +        F K KNL  L +S+N LS STKL
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLS-STKL 138

Query: 407 KVNSSFPNLFGLGLSACNISEFPDI---LRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
                  NL  L LS   I         +     L+   LS N+I          +    
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI--GR 196

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC--NLT 521
           L+ L L+N  L          +     ++++ +  L +  +  +   +  F+     NLT
Sbjct: 197 LFGLFLNNVQLGPS---LTEKLCLELANTSIRN--LSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
            L+L+ N L      S      LE   +  N I   F + L  L  ++ L L+ +     
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 582 IGDNT-------TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTP 634
           I   +       +         +++  N+  G + +        + +             
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKY------------- 357

Query: 635 LN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
           L+ S+++     LT +         L     ++L+ NK      +    L  L+ L+ + 
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLH---ILNLTKNKISKIESDAFSWLGHLEVLD-LG 413

Query: 694 HNNLTGDIP-SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
            N +  ++     R L  +  + LS N  +         +  L  L L     +      
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 753 SQFNTFRN 760
           S F   RN
Sbjct: 474 SPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  173 bits (441), Expect = 2e-45
 Identities = 86/423 (20%), Positives = 162/423 (38%), Gaps = 43/423 (10%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS-LS 403
           H  SN +     +   + +NLI L L  N LS  T+L    +L+NL+ L +SNN++  L 
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALK 161

Query: 404 TKLKVNSSFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWM-WDLGI 461
           ++     +  +L  L LS+  I EF P     + +L    L+  ++   ++  +  +L  
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
           T++  L LSN+ L+       T    L + +NLT  +LD+  NN N   +  F     L 
Sbjct: 222 TSIRNLSLSNSQLSTT---SNTTFLGLKW-TNLT--MLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNF---------PNWLEILPELQVLI 572
              L  N ++     SL    ++  L++  +    +              + L  L+ L 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
           +  N   G   +          + + LS++  +    T      +  +   ++ + +   
Sbjct: 336 MEDNDIPGIKSN--MFTGLINLKYLSLSNSFTSLRTLTN-----ETFVSLAHSPLHI--- 385

Query: 633 TPLN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLN 690
             LN + N        I  I+      L     +DL  N+    +  +    L  +  + 
Sbjct: 386 --LNLTKNK-------ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI- 435

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNML--VGHIPTQLTSLKYLSVLNLSYNQFEGP 748
            +S+N       +    +  ++ L L    L  V   P+    L+ L++L+LS N     
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 749 IPQ 751
              
Sbjct: 496 NDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  158 bits (401), Expect = 2e-40
 Identities = 76/432 (17%), Positives = 134/432 (31%), Gaps = 77/432 (17%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S  +L+  +P  +    N+ +L L  N+L       +F +   L  L V  N +S   KL
Sbjct: 12  SHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTIS---KL 64

Query: 407 KVNS--SFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
           +       P L  L L    +S+           L   +L  N I    ++         
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ--KN 122

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN--LT 521
           L  LDLS+N L++ +      +  L        + L +  N      S++     N  L 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENL--------QELLLSNNKIQALKSEELDIFANSSLK 174

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI---LPELQVLILRSNRF 578
            L L+ N+++   P        L  L + N Q+  +    L +      ++ L L +++ 
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                     + +    ++DLS+N    V                               
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGND---------------------------- 266

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN-------- 690
                   +           L       L  N  Q      +  L  ++ LN        
Sbjct: 267 --------SFAW--------LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           +IS  +L        + L  +E L++  N + G      T L  L  L+LS +       
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 751 QGSQFNTFRNDS 762
               F +  +  
Sbjct: 371 TNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  144 bits (366), Expect = 5e-36
 Identities = 64/338 (18%), Positives = 119/338 (35%), Gaps = 36/338 (10%)

Query: 420 LSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY 479
            S   +++ PD L     +   NL+ N++    ++       + L  LD+  N ++ +E 
Sbjct: 11  CSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRY--SQLTSLDVGFNTISKLEP 66

Query: 480 FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLV 539
                +  L        KVL+++ N  +    + F    NLT L+L  N ++       V
Sbjct: 67  ELCQKLPML--------KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 540 NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599
              +L  LD+ +N ++         L  LQ L+L +N+      +   I      + ++L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 600 SHNEFTGVLPT--GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIER 657
           S N+     P     +     +   N               +  E + L +    I+   
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQ----------LGPSLTEKLCLELANTSIR--- 225

Query: 658 ILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNNISHNNLTGDIPSLLRNLTEVESLD 715
                  + LS+++           L    L  L ++S+NNL          L ++E   
Sbjct: 226 ------NLSLSNSQLSTTSNTTFLGLKWTNLTML-DLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 716 LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
           L  N +       L  L  +  LNL  +  +  I   S
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (325), Expect = 6e-31
 Identities = 61/303 (20%), Positives = 97/303 (32%), Gaps = 39/303 (12%)

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH------------KVLDMRMNNFNGKISQ 512
             D S+  LT +    PTN+T LN   N L                LD+  N  +    +
Sbjct: 8   VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
                  L  LNL  N L      +   C +L  L + +N I     N       L  L 
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

Query: 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
           L  N          T V     + + LS+N+   +         + +    N+S++    
Sbjct: 128 LSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKS-------EELDIFANSSLKK--- 175

Query: 633 TPLN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN- 690
             L  SSN        IK         +     + L++ +    + E +        +  
Sbjct: 176 --LELSSNQ-------IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 691 -NISHNNLTGDIPSLLRNL--TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747
            ++S++ L+    +    L  T +  LDLS N L          L  L    L YN  + 
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 748 PIP 750
              
Sbjct: 287 LFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.1 bits (224), Expect = 1e-18
 Identities = 41/240 (17%), Positives = 81/240 (33%), Gaps = 32/240 (13%)

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
           + +    + +  +L   +P  L    ++ VL++ +NQ+            +L  L +  N
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
                  +       P  ++++L HNE +  L          +               L+
Sbjct: 60  TISKLEPE--LCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTE-------------LH 103

Query: 637 -SSNYYESII-LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISH 694
             SN  + I                   +T+DLS N           +L  L+ L  +S+
Sbjct: 104 LMSNSIQKIKNNPFVK--------QKNLITLDLSHNGLSSTKLGTQVQLENLQEL-LLSN 154

Query: 695 NNLTGDIPSLLR--NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
           N +       L     + ++ L+LSSN +    P    ++  L  L L+  Q    + + 
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (497), Expect = 5e-56
 Identities = 76/322 (23%), Positives = 114/322 (35%), Gaps = 68/322 (21%)

Query: 464 LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMR-MNNFNGKISQKFVNSCNL 520
           +  LDLS   L      P +  N+  L          L +  +NN  G I         L
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYL--------NFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
             L +    + G +P  L     L  LD   N ++   P  +  LP L  +    NR  G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 581 PI----GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
            I    G  + +        + +S N  TG +P  +          N N           
Sbjct: 164 AIPDSYGSFSKLFTS-----MTISRNRLTGKIPPTF---------ANLN----------- 198

Query: 637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN 696
                                       +DLS N  +G    + G     + ++ ++ N+
Sbjct: 199 -------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIH-LAKNS 232

Query: 697 LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFN 756
           L  D+  +      +  LDL +N + G +P  LT LK+L  LN+S+N   G IPQG    
Sbjct: 233 LAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 757 TFRNDSYVGNSGLCGFPLLESC 778
            F   +Y  N  LCG P L +C
Sbjct: 292 RFDVSAYANNKCLCGSP-LPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 19/135 (14%)

Query: 5   LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCC--SWDGVTCD-- 60
           LC+     ALLQ K+                  +   + SW    DCC  +W GV CD  
Sbjct: 2   LCNPQDKQALLQIKKDLG---------------NPTTLSSWLPTTDCCNRTWLGVLCDTD 46

Query: 61  TVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLL 120
           T    V  LDLS   L    P  SSL  LP++  L +   +     I    ++L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 121 NLSSSNFMGSIPASI 135
            ++ +N  G+IP  +
Sbjct: 107 YITHTNVSGAIPDFL 121

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 690 NNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG--HIPTQLTSLKYLSVLNLS-YNQFE 746
            +  +    G +         V +LDLS   L     IP+ L +L YL+ L +   N   
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 747 GPIP 750
           GPIP
Sbjct: 91  GPIP 94

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L ++ + + G IP    L  +  +  L+ ++N  +   +    S L +L  +    +   
Sbjct: 106 LYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRIS 162

Query: 129 GSIPASI----DLINVSRLSTNYL 148
           G+IP S      L     +S N L
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSL-TLLNLSSSNF 127
           LD S + L G +P   S+  LP++  +    N  +   I   +     L T + +S +  
Sbjct: 130 LDFSYNALSGTLPP--SISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRL 186

Query: 128 MGSIPASIDLINVSR--LSTNYL 148
            G IP +   +N++   LS N L
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNML 209

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           + L+ + L  ++     +    ++  L+L  N   Y  +  G +QL+ L  LN+S +N  
Sbjct: 226 IHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 129 GSIPASIDLINVSRLS 144
           G IP   +L      +
Sbjct: 282 GEIPQGGNLQRFDVSA 297

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 7e-05
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           + +S + L G IP   +   L ++  ++L+ N     + S  F   ++   ++L+ ++  
Sbjct: 179 MTISRNRLTGKIPP--TFANL-NLAFVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNSLA 234

Query: 129 GSIPASIDLINVSR--LSTNYL 148
             +       N++   L  N +
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRI 256

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  172 bits (437), Expect = 3e-45
 Identities = 63/432 (14%), Positives = 129/432 (29%), Gaps = 72/432 (16%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGT--TELYDFAKLKNLKWLFVSNNRLSL 402
           +    Q   +       L++L  + + +        T L     L  ++ + V+ NR   
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK---ALPEMQLINVACNRGIS 287

Query: 403 STKLKVNSSFP-------NLFGLGLSACNISEF--PDILRTLHQLQWFNLSKNRIHGRIS 453
             +LK +            +  + +   N+  F     L+ + +L       N++ G++ 
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 454 SWMWDLG-ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIS 511
           +     G    L  L+L+ N +T I   P       NF       + L    N      +
Sbjct: 348 A----FGSEIKLASLNLAYNQITEI---PA------NFCGFTEQVENLSFAHNKLKYIPN 394

Query: 512 QKFVNSC-NLTNLNLNGNRLEG-------PLPLSLVNCHHLEVLDVGNNQINDNFPNWLE 563
                S   ++ ++ + N +         PL  +     ++  +++ NNQI+        
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 564 ILPELQVLILRSNRFWGPIGDNTTIVPF-----PRFRIIDLSHNEFTGVLPTGYLDNFKA 618
               L  + L  N       ++                IDL  N+ T +           
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 619 MMHGNNNSVEVDYMTPLN-SSNYYESIILTIKGIDIQIE-----RILTIFMTIDLSSNKF 672
           ++              ++ S N              Q       +   I    D   N+ 
Sbjct: 515 LVG-------------IDLSYNS-------FSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 673 QGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL 732
               PE +     L  L  I  N++      +  N+     LD+  N  +    + +   
Sbjct: 555 LREWPEGITLCPSLTQLQ-IGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPY 610

Query: 733 KYLSVLNLSYNQ 744
               +  L Y++
Sbjct: 611 IEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (410), Expect = 1e-41
 Identities = 63/424 (14%), Positives = 125/424 (29%), Gaps = 45/424 (10%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             +S+    SI  S         +   SN ++  ++     +L  L+  ++ N+      
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK--AVMRLTKLRQFYMGNSPFVAE- 221

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
                           +             L  L    +       ++ +++  L    +
Sbjct: 222 ---NICEAWENENSEYAQ-QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--PEM 275

Query: 465 YYLDLSNNFLTNIEYFP--PTNMTQLNFDSNLTHKVLDMRMNNF-NGKISQKFVNSCNLT 521
             ++++ N   + E        +        +   ++ +  NN     +         L 
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQ--IIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
            L    N+LEG LP +  +   L  L++  NQI +   N+     +++ L    N+    
Sbjct: 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KY 391

Query: 582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY 641
           I +            ID S+NE    +     D          N   ++      S+N  
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSINL-----SNNQ- 444

Query: 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQG-------GIPEVVGKLNLLKGLNNISH 694
                 I     ++    +   +I+L  N              E      LL  ++ +  
Sbjct: 445 ------ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID-LRF 497

Query: 695 NNLTGDIPSL-LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL------NLSYNQFEG 747
           N LT          L  +  +DLS N      PTQ  +   L         +   N+   
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 748 PIPQ 751
             P+
Sbjct: 557 EWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  157 bits (399), Expect = 3e-40
 Identities = 59/427 (13%), Positives = 130/427 (30%), Gaps = 70/427 (16%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
                SG +P ++ +L  L +L L S+       L+    +                 K 
Sbjct: 89  EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKT 148

Query: 407 KVNS----SFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
            V+      F +L    +++           R   +        N I   +S  +  L  
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRL-- 205

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
           T L    + N+                N +    +K  D++ +N             +LT
Sbjct: 206 TKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQYKTEDLKWDNLK-----------DLT 252

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQI--------NDNFPNWLEILPELQVLIL 573
           ++ +        LP  L     +++++V  N+         +        +  ++Q++ +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 574 RSNRFW-GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEV 629
             N     P+   T++    +  +++  +N+  G LP     +   +       N     
Sbjct: 313 GYNNLKTFPV--ETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQ---- 364

Query: 630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV--VGKLNLLK 687
                             I  I             +  + NK +  IP +     ++++ 
Sbjct: 365 ------------------ITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405

Query: 688 GLNNISHNNLTG-------DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 740
            ++  S+N +          +         V S++LS+N +        ++   LS +NL
Sbjct: 406 AID-FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 741 SYNQFEG 747
             N    
Sbjct: 465 MGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (351), Expect = 3e-34
 Identities = 57/407 (14%), Positives = 120/407 (29%), Gaps = 58/407 (14%)

Query: 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSAC 423
            +  L L     SG        +L  L+ L + ++   ++ +L                 
Sbjct: 82  RVTGLSLEGFGASG-RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 424 NISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI---TALYYLDLSNNFLTNIEY 479
               +    +    +  + +L K+ I+                    +   +N +T +  
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-- 198

Query: 480 FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLV 539
                + +L   + L      M  + F  +   +   + N                L   
Sbjct: 199 --SKAVMRL---TKLRQ--FYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWD 246

Query: 540 NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP------IGDNTTIVPFPR 593
           N   L  ++V N       P +L+ LPE+Q++ +  NR                     +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 594 FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN-SSNYYESIILTIKGID 652
            +II + +N          L   K +               L    N  E  +       
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGM-------------LECLYNQLEGKLPAFGS-- 351

Query: 653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL--RNLTE 710
                      +++L+ N+         G    ++ L + +HN L   IP++   ++++ 
Sbjct: 352 ------EIKLASLNLAYNQITEIPANFCGFTEQVENL-SFAHNKLKY-IPNIFDAKSVSV 403

Query: 711 VESLDLSSNMLVG-------HIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           + ++D S N +          +         +S +NLS NQ      
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  126 bits (318), Expect = 4e-30
 Identities = 46/296 (15%), Positives = 90/296 (30%), Gaps = 44/296 (14%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           + + NQ++    +     E +  L    N+L     ++D   +  +  +  S N +    
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG--- 415

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
                          +   N             +   NLS N+I             + L
Sbjct: 416 --------------SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPL 459

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFD-SNLTH-KVLDMRMNNFNGKISQKFVNSC-NLT 521
             ++L  N LT I   P  ++   N +  N      +D+R N            +   L 
Sbjct: 460 SSINLMGNMLTEI---PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGN------NQINDNFPNWLEILPELQVLILRS 575
            ++L+ N      P   +N   L+   + N      N+    +P  + + P L  L + S
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 576 NRFWGPIGDNTTIVP--FPRFRIIDLSHNEFTGVLPTGYLDNFKAMM---HGNNNS 626
           N           +     P   ++D+  N    +  +      +A M     +   
Sbjct: 576 NDI-------RKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (290), Expect = 8e-27
 Identities = 48/344 (13%), Positives = 102/344 (29%), Gaps = 50/344 (14%)

Query: 421 SACNISEFPDI-LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT-NIE 478
                   P + L +  ++   +L      GR+   +  L  T L  L L ++    N  
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQL--TELEVLALGSHGEKVNER 122

Query: 479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK--FVNSCNLTNLNLNGNRLEGPLPL 536
            F P  ++    D             ++           +  +L    +N +  +  +  
Sbjct: 123 LFGPKGISANMSDEQ-----KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 537 SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI 596
           S         +   +N I       +  L +L+   + ++ F               +  
Sbjct: 178 SSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAEN-------ICEAWEN 229

Query: 597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE 656
            +  + +          DN K +               + +      +   +K       
Sbjct: 230 ENSEYAQQYKTEDLK-WDNLKDLTDVE-----------VYNCPNLTKLPTFLKA------ 271

Query: 657 RILTIFMTIDLSSNKF--------QGGIPEVVGKLNLLKGLNNISHNNL-TGDIPSLLRN 707
             L     I+++ N+                      ++ +  I +NNL T  + + L+ 
Sbjct: 272 --LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII-YIGYNNLKTFPVETSLQK 328

Query: 708 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
           + ++  L+   N L G +P    S   L+ LNL+YNQ       
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 5e-20
 Identities = 31/247 (12%), Positives = 72/247 (29%), Gaps = 31/247 (12%)

Query: 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN----FPNWLEILPELQVL 571
           ++  +T L+L G    G +P ++     LEVL +G++    N     P  +      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631
                 +         +   PR    DL  +          +   K          ++  
Sbjct: 139 QKMRMHYQKTF-----VDYDPREDFSDLIKDCINSDPQQKSI---KKSSRITLKDTQIG- 189

Query: 632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN 691
                 SN    +   +          LT      + ++ F         +         
Sbjct: 190 ----QLSNNITFVSKAVMR--------LTKLRQFYMGNSPFVAENICEAWENENS----- 232

Query: 692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
             +            NL ++  +++ +   +  +PT L +L  + ++N++ N+       
Sbjct: 233 -EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 752 GSQFNTF 758
              +   
Sbjct: 292 KDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 91.3 bits (227), Expect = 4e-19
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 49/224 (21%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSG------TTELYDFAKLKNLKWLFVSNN 398
           + S+NQ+S            L  + L  N L+         E  +F     L  + +  N
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 399 RLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWF------NLSKNRIHGRI 452
           +L+  +     ++ P L G+ LS  + S+FP        L+ F      +   NR     
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

Query: 453 SSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ 512
              +      +L  L + +N +  +                                   
Sbjct: 559 PEGITLC--PSLTQLQIGSNDIRKV---NEKITP-------------------------- 587

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND 556
                 N++ L++  N         +       +  +  ++  D
Sbjct: 588 ------NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 7e-12
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 40  PKMMSWKEDADCCSW---DGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLN 96
               +W  + +   W    GV+ ++  G V GL L      G +P   ++  L  +  L 
Sbjct: 55  QPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPD--AIGQLTELEVLA 111

Query: 97  LAFNDFNYSE---ISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYL 148
           L  +    +E      G S   S         ++  +        + S L  + +
Sbjct: 112 LGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 7/116 (6%)

Query: 664 TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSSN 719
            + L      G +P+ +G+L  L+ L  +  +    +     P  +      E       
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVL-ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 720 MLVGHIPTQLTSLKY--LSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773
                         +  L    ++ +  +  I + S+           ++ +    
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 12/60 (20%), Positives = 18/60 (30%)

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           N   +         L +   V  L L      G +P  +  L  L VL L  +  +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 12/88 (13%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 69  LDLSC------SWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNL 122
           ++++C        L  +  + +       I+ + + +N+     + +   +++ L +L  
Sbjct: 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Query: 123 SSSNFMGSIPASIDLINVSRL--STNYL 148
             +   G +PA    I ++ L  + N +
Sbjct: 338 LYNQLEGKLPAFGSEIKLASLNLAYNQI 365

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  165 bits (419), Expect = 4e-43
 Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 54/419 (12%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N ++   P +  E+  L  L L +N  S          L  L+   +         
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 405 KLKV--NSSFPNLFGLGLSACNIS-------EFPDILRTLHQLQWFNLSKNRIHGRISSW 455
            L+    S+   L  L +    ++       +  D+   L  +  F+L    I       
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF- 300

Query: 456 MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515
                     +L+L N            ++ +L F              +  G  +   V
Sbjct: 301 ---SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF-------------TSNKGGNAFSEV 344

Query: 516 NSCNLTNLNLNGNRL--EGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573
           +  +L  L+L+ N L  +G    S      L+ LD+  N +     N+L  L +L+ L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403

Query: 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT 633
           + +       + +  +       +D+SH         G  +   ++              
Sbjct: 404 QHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEV------------ 449

Query: 634 PLN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNI 692
            L  + N ++   L        I   L     +DLS  + +   P     L+ L+ LN +
Sbjct: 450 -LKMAGNSFQENFLP------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN-M 501

Query: 693 SHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQFEGPIP 750
           SHNN         + L  ++ LD S N ++     +L      L+ LNL+ N F     
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  164 bits (418), Expect = 7e-43
 Identities = 83/419 (19%), Positives = 138/419 (32%), Gaps = 27/419 (6%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            S N L      S +    L +L L    +    E   +  L +L  L ++ N +  S  
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ-SLA 92

Query: 406 LKVNSSFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHG-RISSWMWDLGITA 463
           L   S   +L  L     N++      +  L  L+  N++ N I   ++  +  +L  T 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--TN 150

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523
           L +LDLS+N + +I       + Q+     L +  LD+ +N  N      F     L  L
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQM----PLLNLSLDLSLNPMNFIQPGAF-KEIRLHKL 205

Query: 524 NLNGNRLEGPLP-LSLVNCHHLEVLD------VGNNQINDNFPNWLEILPELQVLILRSN 576
            L  N     +    +     LEV             +     + LE L  L +   R  
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 577 RFWGPIGDNT-TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL 635
                + D               L       V    Y   ++ +   N    +      L
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP---TL 322

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK--FQGGIPEVVGKLNLLKGLNNIS 693
              +       + KG +   E  L     +DLS N   F+G   +       LK L ++S
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-DLS 381

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQ 751
            N +   + S    L ++E LD   + L          SL+ L  L++S+         
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (391), Expect = 2e-39
 Identities = 73/418 (17%), Positives = 133/418 (31%), Gaps = 46/418 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
                 L+      +  L+ L  L +  N +        F+ L NL+ L +S+N++    
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 405 KLKVNSSFPNLFGLG-------LSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMW 457
                +    L  +        LS   ++          +L    L  N     +     
Sbjct: 166 C----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT-C 220

Query: 458 DLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKISQKFVN 516
             G+  L    L      N       + + L    NLT +   +   + +   I   F  
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
             N+++ +L    +E     S       + L++ N +        L+ L  L     +  
Sbjct: 281 LTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
                     + V  P    +DLS N  +        D           S++      L+
Sbjct: 339 NA-------FSEVDLPSLEFLDLSRNGLSFKGCCSQSD-------FGTTSLKY-----LD 379

Query: 637 -SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNNISH 694
            S N   ++     G++ Q+E        +D   +  +      V   L  L  L +ISH
Sbjct: 380 LSFNGVITMSSNFLGLE-QLE-------HLDFQHSNLKQMSEFSVFLSLRNLIYL-DISH 430

Query: 695 NNLTGDIPSLLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVLNLSYNQFEGPIPQ 751
            +       +   L+ +E L ++ N    +  P   T L+ L+ L+LS  Q E   P 
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (348), Expect = 5e-34
 Identities = 87/417 (20%), Positives = 141/417 (33%), Gaps = 50/417 (11%)

Query: 354 SIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFP 413
            +P+  Y+   L   ++P N    T  L             +S N L          SFP
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPFSTKNLD------------LSFNPLR-HLGSYSFFSFP 52

Query: 414 NLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNN 472
            L  L LS C I        ++L  L    L+ N I          L  ++L  L     
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL--SSLQKLVAVET 110

Query: 473 FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KISQKFVNSCNLTNLNLNGNRLE 531
            L ++E FP  ++  L        K L++  N     K+ + F N  NL +L+L+ N+++
Sbjct: 111 NLASLENFPIGHLKTL--------KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 532 GPLPLSLVNCHHLEV----LDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTT 587
                 L   H + +    LD+  N +N   P   + +  L  L LR+N     +   T 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV-MKTC 220

Query: 588 IVPFPRFRIIDLSHNEFTG-----VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNS---SN 639
           I       +  L   EF             L+    +         +DY         + 
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 640 YYESIILTIKGIDIQIERILTIFM---TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN 696
                  ++  + I+  +  +       ++L + KF G  P        LK L  ++  +
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF-GQFPT-----LKLKSLKRLTFTS 334

Query: 697 LTGDIPSLLRNLTEVESLDLSSNML--VGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
             G       +L  +E LDLS N L   G           L  L+LS+N        
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (274), Expect = 8e-25
 Identities = 50/298 (16%), Positives = 85/298 (28%), Gaps = 62/298 (20%)

Query: 468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNG 527
                    I    P N+       +  +  LD+  N      S  F +   L  L+L+ 
Sbjct: 13  QCMELNFYKI----PDNLP-----FSTKN--LDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 528 NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTT 587
             ++     +  +  HL  L +  N I          L  LQ L+            N  
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE--NFP 119

Query: 588 IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILT 647
           I      + ++++HN         Y  N                                
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSN-------------------------------- 147

Query: 648 IKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN---NISHNNLTGDIPSL 704
                      LT    +DLSSNK Q      +  L+ +  LN   ++S N +    P  
Sbjct: 148 -----------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 705 LRNLTEVESLDLSSNMLVGHIP-TQLTSLKYLSVLNLSYNQFEGPIP-QGSQFNTFRN 760
            + +  +  L L +N    ++  T +  L  L V  L   +F      +    +    
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L    + L         +  L  +++LN+A N     ++   FS L +L  L+LSS+   
Sbjct: 105 LVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 129 GSIPASIDLINVSRLSTNYL 148
                 + +++   L    L
Sbjct: 163 SIYCTDLRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LDLS + L      + S F    ++ L+L+FN      +SS F  L  L  L+   SN  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 129 GSIPASI 135
                S+
Sbjct: 410 QMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LD+S +              L  +  L +A N F  + +   F++LR+LT L+LS     
Sbjct: 426 LDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 129 GSIPASI-DLINVSRL--STN---YLPIFAFSDCFQL 159
              P +   L ++  L  S N    L  F +     L
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 5e-04
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LDLS   +        +   L H+  L L  N    S     FS L SL  L    +N  
Sbjct: 57  LDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA 113

Query: 129 GSIPASI-DLINVSRL--STNYLPIFAFSDCFQ 158
                 I  L  +  L  + N +  F   + F 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (402), Expect = 8e-41
 Identities = 84/448 (18%), Positives = 151/448 (33%), Gaps = 44/448 (9%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             +  Q+      +      L  L L +N L    E    +  K LK LF     +S S 
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHLFFIQTGIS-SI 120

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
                 +   L  L L + +IS           +L+  +   N IH      M  L    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 464 LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTH---------------KVLDMRMNNF 506
              L+L+ N +  IE   F       LNF                      +      + 
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 507 NGKISQKFVNSC--NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI 564
                  F   C  ++ ++NL  +        +      L+ LD+    ++   P+ L  
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299

Query: 565 LPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH--- 621
           L  L+ L+L +N+F        +   FP    + +  N     L TG L+N + +     
Sbjct: 300 LSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

Query: 622 GNNN--SVEVDYMTPLNSSNYYESIILT---IKGIDIQIERILTIFMTIDLSSNKFQGGI 676
            +++  + +   +   N S+  +S+ L+      +  +  +       +DL+  + +   
Sbjct: 358 SHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 677 PEVV-GKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHI---PTQLTSL 732
            +     L+LLK L N+SH+ L      L   L  ++ L+L  N            L +L
Sbjct: 417 AQSPFQNLHLLKVL-NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 733 KYLSVLNLSYNQFEGPIPQGSQFNTFRN 760
             L +L LS+             + F +
Sbjct: 476 GRLEILVLSFCDLSSIDQ-----HAFTS 498

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  152 bits (387), Expect = 6e-39
 Identities = 68/415 (16%), Positives = 132/415 (31%), Gaps = 66/415 (15%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTT-ELYDFAKLKNLKWLFVSNNRLS-L 402
           + + N ++  I    ++      L     +      +    + +++L      +     +
Sbjct: 185 NLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 403 STKLKVNSSFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
           S  +       ++  + L          +       LQ  +L+   +   + S +  L  
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL-- 300

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-SQKFVNSCNL 520
           + L  L LS N   N+     +N   L          L ++ N    ++ +    N  NL
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSL--------THLSIKGNTKRLELGTGCLENLENL 352

Query: 521 TNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
             L+L+ + +E      L L N  HL+ L++  N+         +  P+L++L L   R 
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                  +        ++++LSH+           D   A+ H                 
Sbjct: 413 KV-KDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQH----------------- 453

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN--NISHNN 696
                                     ++L  N F  G  +    L  L  L    +S  +
Sbjct: 454 --------------------------LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 697 LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
           L+        +L  +  +DLS N L       L+ LK +  LNL+ N     +P 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (384), Expect = 1e-38
 Identities = 76/437 (17%), Positives = 140/437 (32%), Gaps = 61/437 (13%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
            F    +S      ++  + L  L L SN +S   +L      + LK L   NN +   +
Sbjct: 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI-KLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 405 KLKVNSSFPNLFG-----LGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL 459
           K        +L       L L+  +I+            Q  N    +    I   + + 
Sbjct: 170 K----EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

Query: 460 GITALYYLDLSNNFLTNIEYFPPTNMTQLNFD-----------------SNLTH-KVLDM 501
            I +L+     +    +I       + +++ +                    +  + LD+
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 502 RMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV-GNNQINDNFPN 560
              + + ++    V    L  L L+ N+ E    +S  N   L  L + GN +  +    
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 561 WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA-- 618
            LE L  L+ L L  +        N  +      + ++LS+NE    L T          
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLE 403

Query: 619 --MMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI 676
              +      V+       N                      L     ++LS +      
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHL-------------------LK---VLNLSHSLLDISS 441

Query: 677 PEVVGKLNLLKGLNNISHNNLTGDI---PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733
            ++   L  L+ LN +  N+         + L+ L  +E L LS   L        TSLK
Sbjct: 442 EQLFDGLPALQHLN-LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 734 YLSVLNLSYNQFEGPIP 750
            ++ ++LS+N+      
Sbjct: 501 MMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (359), Expect = 2e-35
 Identities = 77/417 (18%), Positives = 141/417 (33%), Gaps = 45/417 (10%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
           FS N L     ++   L NL  L L   ++    E   F     L  L ++ N L    +
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAE 98

Query: 406 LKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
               S    L  L      IS      L     L+   L  N I        +      L
Sbjct: 99  -TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKL 155

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
             LD  NN +  +      +M+ L      T+  L++  N+  G I     +S    +LN
Sbjct: 156 KVLDFQNNAIHYL---SKEDMSSL---QQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLN 208

Query: 525 LNGNRLEGPLPLSLVNCH--HLEVLDVGNNQINDNFPNWLEILPE--LQVLILRSNRFWG 580
             G +    +   L N     L +    +    D  P   E L E  ++ + L+ + F+ 
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 581 PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN-SSN 639
              +  T   F   + +DL+    + +                 ++++      L  S+N
Sbjct: 269 ISSN--TFHCFSGLQELDLTATHLSELPSG----------LVGLSTLKK-----LVLSAN 311

Query: 640 YYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI-PEVVGKLNLLKGLNNISHNNLT 698
                    + +             + +  N  +  +    +  L  L+ L+ +SH+++ 
Sbjct: 312 K-------FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHDDIE 363

Query: 699 --GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
                   LRNL+ ++SL+LS N  +            L +L+L++ + +    Q  
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (348), Expect = 5e-34
 Identities = 77/410 (18%), Positives = 139/410 (33%), Gaps = 48/410 (11%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
            +  L+  IP ++    +   L    N L        F++L NL +L ++  ++      
Sbjct: 20  ENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIY-WIHE 74

Query: 407 KVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
               S   L  L L+A  +    +  L     L+     +  I       + +     L 
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ--KTLE 132

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTN--L 523
            L L +N +++I+        +L        KVLD + N  +    +   +    TN  L
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKL--------KVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI--LPELQVLILRSNRFWGP 581
           NLNGN + G +     +    + L+ G  Q        L+   +  L +           
Sbjct: 185 NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN-SSNY 640
                  +       I+L  + F  +        F  +               L+ ++ +
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQE-------------LDLTATH 289

Query: 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD 700
              +   + G        L+    + LS+NKF+            L  L+ I  N    +
Sbjct: 290 LSELPSGLVG--------LSTLKKLVLSANKFENLCQISASNFPSLTHLS-IKGNTKRLE 340

Query: 701 IPS-LLRNLTEVESLDLSSNML--VGHIPTQLTSLKYLSVLNLSYNQFEG 747
           + +  L NL  +  LDLS + +        QL +L +L  LNLSYN+   
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (326), Expect = 3e-31
 Identities = 63/362 (17%), Positives = 114/362 (31%), Gaps = 65/362 (17%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           +   +       ++ +    L  L L +  LS          L  LK L +S N+     
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLC 317

Query: 405 KLKVNSSFPNLFGLGLSACNI--SEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
           ++   S+FP+L  L +             L  L  L+  +LS + I       +    ++
Sbjct: 318 QISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK-FVNSCNLT 521
            L  L+LS N   +++        QL        ++LD+       K +Q  F N   L 
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQL--------ELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNF---PNWLEILPELQVLILRSNRF 578
            LNL+ + L+            L+ L++  N          N L+ L  L++L+L     
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                             +DLSHN  T        +    +                   
Sbjct: 489 SSIDQH--AFTSLKMMNHVDLSHNRLTSSSI----EALSHLKG----------------- 525

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
                                   + ++L+SN     +P ++  L+  + + N+  N L 
Sbjct: 526 ------------------------IYLNLASNHISIILPSLLPILSQQRTI-NLRQNPLD 560

Query: 699 GD 700
             
Sbjct: 561 CT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 4e-22
 Identities = 39/291 (13%), Positives = 86/291 (29%), Gaps = 27/291 (9%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
            +  N  L  I   P          ++     L+   N      +  F    NLT L+L 
Sbjct: 17  YNCENLGLNEI---PG------TLPNSTEC--LEFSFNVLPTIQNTTFSRLINLTFLDLT 65

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
             ++      +  + H L+ L +  N +       L     L+ L               
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID--FI 123

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPT--GYLDNFKAM-MHGNN-NSVEVDYMTPLNSSNYYE 642
            +        + L  N  + +        +  K +    N  + +  + M+ L  +    
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 643 SIIL---TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNNISHN 695
            + L    I GI+         F +++    +    I + +    +         ++   
Sbjct: 184 -LNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           +++  +   L  ++ VES++L  +               L  L+L+     
Sbjct: 242 DISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  154 bits (391), Expect = 1e-38
 Identities = 69/427 (16%), Positives = 143/427 (33%), Gaps = 60/427 (14%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
            +N+++  I  ++  L  L ++   ++  +      D+    +       N  LS S   
Sbjct: 433 LTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS--- 488

Query: 407 KVNSSFPNLFGLGLSACN-ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI---- 461
               +  +L  + L  C  +++ PD L  L +LQ  N++ NR             +    
Sbjct: 489 ----NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544

Query: 462 ---TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC 518
                +    +  N L         ++ ++     L    LD   N     +   F  + 
Sbjct: 545 DTGPKIQIFYMGYNNLEEFP--ASASLQKM---VKLGL--LDCVHNKVR-HLE-AFGTNV 595

Query: 519 NLTNLNLNGNRLEGPLPLSL-VNCHHLEVLDVGNNQINDNFPNWLEI--LPELQVLILRS 575
            LT+L L+ N++E  +P         +E L   +N++    PN      +  +  +    
Sbjct: 596 KLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSY 653

Query: 576 NRF---WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
           N+       I  +           + LS+NE                +    + +     
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE---------LFATGSPIST--- 701

Query: 633 TPLN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPE--VVGKLNLLKGL 689
             +  S+N   SI            +   +  TIDL  NK    + +      L  L  +
Sbjct: 702 --IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 690 NNISHNNLTGDIPSLLRNLTEVESLDL------SSNMLVGHIPTQLTSLKYLSVLNLSYN 743
           + +S+N  +   P+   N +++++  +        N ++   PT +T+   L  L +  N
Sbjct: 759 D-VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 744 QFEGPIP 750
                + 
Sbjct: 817 DIRK-VD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (382), Expect = 1e-37
 Identities = 60/419 (14%), Positives = 112/419 (26%), Gaps = 76/419 (18%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELY--------DFAKLKNLKWLFVSNN 398
            +      +P  +Y+L  L  L +  NR     +L         D      ++  ++  N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 399 RLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWD 458
            L              L  L      +           +L    L  N+I   I      
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGT-NVKLTDLKLDYNQIEE-IPEDFCA 616

Query: 459 LGITALYYLDLSNNFLTNI-EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV-- 515
                +  L  S+N L  I   F   ++  +          +D   N    +        
Sbjct: 617 F-TDQVEGLGFSHNKLKYIPNIFNAKSVYVM--------GSVDFSYNKIGSEGRNISCSM 667

Query: 516 ---NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND-------NFPNWLEIL 565
                 N + + L+ N ++            +  + + NN +               +  
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 566 PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN 625
             L  + LR N+    + D+      P    +D+S+N F+   PT               
Sbjct: 728 YLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPT--------------- 770

Query: 626 SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNL 685
             +    + L                     +   I    D   N+     P  +     
Sbjct: 771 --QPLNSSQL---------------------KAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 686 LKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 744
           L  L  I  N++      L   L     LD++ N  +    T +       +  L Y++
Sbjct: 808 LIQLQ-IGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  143 bits (362), Expect = 3e-35
 Identities = 61/446 (13%), Positives = 139/446 (31%), Gaps = 65/446 (14%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
            F ++  + S      E     +     +R+    +       + L    +  + ++ + 
Sbjct: 353 SFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412

Query: 405 KLK--VNSSFPNLFGLGLSACN--ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
           ++K     S  +L    +      I+     ++ L +LQ    + +       +      
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA------ 466

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
                  +         E    +N+  L          +++       ++     +   L
Sbjct: 467 -VDWEDANSDYAKQYENEELSWSNLKDL--------TDVELYNCPNMTQLPDFLYDLPEL 517

Query: 521 TNLNLNGNRLEGP---------LPLSLVNCHHLEVLDVGNNQINDNFPNWLEI--LPELQ 569
            +LN+  NR             L         +++  +G N +   FP    +  + +L 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576

Query: 570 VLILRSNRFWGPIGDNTTIVPF---PRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GN 623
           +L    N+          +  F    +   + L +N+    +P  +      +      +
Sbjct: 577 LLDCVHNKV-------RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSH 628

Query: 624 NNSVEVDYMTPLNSSNYYESIILT---IKGIDIQIERILTIFM-----TIDLSSNKFQGG 675
           N    +  +    S     S+  +   I      I   +  +      T+ LS N+ Q  
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 676 IPEVVGKLNLLKGLNNISHNNLT-------GDIPSLLRNLTEVESLDLSSNMLVGHIPTQ 728
             E+    + +  +  +S+N +T              +N   + ++DL  N L   +   
Sbjct: 689 PTELFATGSPISTI-ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDD 746

Query: 729 L--TSLKYLSVLNLSYNQFEGPIPQG 752
              T+L YLS +++SYN F    P  
Sbjct: 747 FRATTLPYLSNMDVSYNCFSS-FPTQ 771

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  133 bits (335), Expect = 5e-32
 Identities = 61/421 (14%), Positives = 126/421 (29%), Gaps = 78/421 (18%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           +     G +P ++ +L  L +L   ++  + +  L    +           +R+ +  K 
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL-FGDEELTPDMSEERKHRIRMHYKK 389

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
                   L    L    I+  P++   + +    +L                       
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMK-PIKKDSRISLKDT-------------------Q 429

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           +    N +T I       + +L   + L    +    + F          + +  + N +
Sbjct: 430 IGNLTNRITFI----SKAIQRL---TKLQI--IYFANSPFTYDN-----IAVDWEDANSD 475

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
             +      LS  N   L  +++ N       P++L  LPELQ L +  NR         
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 587 TIVPFPRF-------RIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEVDYMTPLN 636
                          +I  + +N       +  L     +      +N    ++      
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV 595

Query: 637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN 696
                    LT                 + L  N+ +    +     + ++GL   SHN 
Sbjct: 596 K--------LT----------------DLKLDYNQIEEIPEDFCAFTDQVEGL-GFSHNK 630

Query: 697 LTGDIPSL--LRNLTEVESLDLSSNMLVGHIPTQLTSLKY-----LSVLNLSYNQFEGPI 749
           L   IP++   +++  + S+D S N +         S+        S + LSYN+ +   
Sbjct: 631 LKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 750 P 750
            
Sbjct: 690 T 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (311), Expect = 5e-29
 Identities = 54/279 (19%), Positives = 102/279 (36%), Gaps = 37/279 (13%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS-- 401
               NQ+   IP       + +  L    N+L     +++   +  +  +  S N++   
Sbjct: 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 402 ---LSTKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMW 457
              +S  +  +    N   + LS   I +FP ++  T   +    LS N +   I     
Sbjct: 660 GRNISCSMD-DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSL 717

Query: 458 DL------GITALYYLDLSNNFLTNI-EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI 510
                       L  +DL  N LT++ + F  T +  L          +D+  N F+   
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL--------SNMDVSYNCFSS-F 768

Query: 511 SQKFVNSCNLT------NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI 564
             + +NS  L         +  GNR+    P  +  C  L  L +G+N I        ++
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE--KL 825

Query: 565 LPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603
            P+L +L +  N       D T++ P+    +  L +++
Sbjct: 826 TPQLYILDIADNPNIS--IDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (259), Expect = 9e-23
 Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           LD  N    +       +    NF+  L         + +  +      N+  +T L+L 
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKEL---------DMWGDQPGVDLDNNGRVTGLSLA 331

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
           G   +G +P ++     L+VL  G +    +   + +      +   R +R         
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKM 390

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIIL 646
            +    R  + DL  +          +          ++ + +      N +N       
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKK--------DSRISLKDTQIGNLTNR------ 436

Query: 647 TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
            I  I   I+R LT    I  +++ F      V  +           +     +      
Sbjct: 437 -ITFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANS------DYAKQYENEELSWS 488

Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNT 757
           NL ++  ++L +   +  +P  L  L  L  LN++ N+        + +  
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 6e-21
 Identities = 52/389 (13%), Positives = 121/389 (31%), Gaps = 67/389 (17%)

Query: 380 ELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI-LRTLHQL 438
            +++    KN ++   + N    S     N                 + P + L    ++
Sbjct: 276 AIWEALDGKNWRYYSGTINNTIHSLNWNFNKEL----------DMWGDQPGVDLDNNGRV 325

Query: 439 QWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV 498
              +L+     GR+   +  L  T L  L    +  T             +      H++
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQL--TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNF 558
                  F     Q+   S  L +       ++     S ++    ++ ++  N+I    
Sbjct: 384 RMHYKKMF-LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL-TNRIT-FI 440

Query: 559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA 618
              ++ L +LQ++   ++ F       T       +   +  + +           N K 
Sbjct: 441 SKAIQRLTKLQIIYFANSPF-------TYDNIAVDWEDANSDYAKQYENEELS-WSNLKD 492

Query: 619 M----MHGNNNSVEV-DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ 673
           +    ++   N  ++ D++  L          L                 +++++ N+  
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPE--------LQ----------------SLNIACNRGI 528

Query: 674 G---------GIPEVVGKLNLLKGLNNISHNNLTG-DIPSLLRNLTEVESLDLSSNMLVG 723
                      + +       ++    + +NNL      + L+ + ++  LD   N +  
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIF-YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586

Query: 724 HIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
           H+     +   L+ L L YNQ E  IP+ 
Sbjct: 587 HLEA-FGTNVKLTDLKLDYNQIEE-IPED 613

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 37/335 (11%), Positives = 89/335 (26%), Gaps = 79/335 (23%)

Query: 441 FNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLD 500
           FN   +    +    + + G   +  L L+       +   P  + QL   + L    L 
Sbjct: 304 FNKELDMWGDQPGVDLDNNG--RVTGLSLAGF---GAKGRVPDAIGQL---TELKV--LS 353

Query: 501 MRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL-PLSLVNCHHLEVLDVGNNQINDNFP 559
              ++                      +R+      + L     L + D+  + IN N  
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN-- 411

Query: 560 NWLEILPELQVLILRSNRFWGPIGDNTTIVP-----FPRFRIIDLSHNEFTGVLPTGYLD 614
             ++ + +   + L+  +    + +  T +        + +II  +++ FT        +
Sbjct: 412 PEMKPIKKDSRISLKDTQIGN-LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470

Query: 615 NFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG 674
           +                                                  +    K   
Sbjct: 471 D-------------------------------------------------ANSDYAKQYE 481

Query: 675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG---------HI 725
                   L  L  +  + +      +P  L +L E++SL+++ N  +           +
Sbjct: 482 NEELSWSNLKDLTDV-ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 726 PTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRN 760
                +   + +  + YN  E   P  +       
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVK 574

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 5e-16
 Identities = 31/249 (12%), Positives = 74/249 (29%), Gaps = 45/249 (18%)

Query: 345 HFSSNQLSGSIPS--SVYELENLILLRLPSNRLSG----TTELYDFAKLKNLKWLFVSNN 398
            FS N+L   IP+  +   +  +  +    N++       +   D  K  N   + +S N
Sbjct: 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

Query: 399 RLSLSTKLKVNSSFPNLFGLGLSACNISEFPD--------ILRTLHQLQWFNLSKNRIHG 450
            +      ++ ++   +  + LS   ++  P+          +  + L   +L  N++  
Sbjct: 684 EIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

Query: 451 RISSWMWDLGITALYYLDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG 508
            +S       +  L  +D+S N  ++   +    + +              D   N    
Sbjct: 743 -LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR-----DAEGNRILR 796

Query: 509 KISQKFVN---------SCN------------LTNLNLNGNRLEGPLPLSLVNCHHLEVL 547
           +                  N            L  L++  N        S+       + 
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 548 DVGNNQIND 556
            +  ++  D
Sbjct: 857 VLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDF--------NYSEISSGFSQLRSLTLL 120
           ++L        +P    L+ LP ++ LN+A N          +++ ++        + + 
Sbjct: 496 VELYNCPNMTQLPD--FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 121 NLSSSNFMGSIPASIDLINVSRLSTNYL 148
            +   N +   PAS  L  + +L     
Sbjct: 554 YM-GYNNLEEFPASASLQKMVKLGLLDC 580

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (366), Expect = 3e-36
 Identities = 67/412 (16%), Positives = 123/412 (29%), Gaps = 35/412 (8%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
                +L+      + +L  L  L +  N +        F+ L NL  + +S N +   T
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 405 KL---KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
                 +  +      L +S   I    D      +L    L  N     I        +
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL-QNL 228

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
             L+   L      +         + +    ++T     +   N       KF    N++
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
            ++L G  ++      +      + L +   Q+          LP L+ L L  N+    
Sbjct: 289 AMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNK---- 339

Query: 582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY 641
              +   V  P    +DLS N  +            +      NS+    +    S N  
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCC-------SYSDLGTNSLRHLDL----SFNGA 388

Query: 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNNISHNNLTGD 700
             +     G        L     +D   +  +          L  L  L +IS+ N   D
Sbjct: 389 IIMSANFMG--------LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL-DISYTNTKID 439

Query: 701 IPSLLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQ 751
              +   LT + +L ++ N    +  +    +   L+ L+LS  Q E     
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (365), Expect = 3e-36
 Identities = 76/412 (18%), Positives = 131/412 (31%), Gaps = 52/412 (12%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N +   I    ++   L  L L  N  S          L  L    +         
Sbjct: 187 DMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 405 KLKV--NSSFPNLFGLGLSACNISEF------PDILRTLHQLQWFNLSKNRIHGRISSWM 456
            L++   S    L  + +    ++              L  +   +L+   I   +    
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVP 304

Query: 457 WDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVN 516
                     L +       ++ FP  ++  L        K L + MN   G IS K V 
Sbjct: 305 KHFK---WQSLSIIRC---QLKQFPTLDLPFL--------KSLTLTMNK--GSISFKKVA 348

Query: 517 SCNLTNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574
             +L+ L+L+ N L   G    S +  + L  LD+  N            L ELQ L  +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQ 407

Query: 575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTP 634
            +     + + +  +   +   +D+S+         G      ++               
Sbjct: 408 HSTLKR-VTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNT------------- 452

Query: 635 LN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
           L  + N ++   L+       +    T    +DLS  + +     V   L+ L+ LN +S
Sbjct: 453 LKMAGNSFKDNTLS------NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN-MS 505

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
           HNNL     S    L  + +LD S N +           K L+  NL+ N  
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (353), Expect = 1e-34
 Identities = 64/439 (14%), Positives = 128/439 (29%), Gaps = 68/439 (15%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S  ++      + + L +L  L L  N +   +    F+ L +L+ L     +L     L
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKL---ASL 119

Query: 407 KVNS--SFPNLFGLGLSACNISEF--PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
           +         L  L ++   I     P     L  L   +LS N I     + +  L   
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 463 --ALYYLDLSNNFLTNIE--YFPPTNMTQLNFDSN-------------LTH-KVLDMRMN 504
                 LD+S N +  I+   F    + +L    N             L    V  + + 
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 505 NFNGKISQKFVN--------SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND 556
            F  + + +              +    L          +      ++  + +    I  
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 557 NFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNF 616
                +    + Q L +   +           +  P  + + L+ N+ +       L + 
Sbjct: 300 LED--VPKHFKWQSLSIIRCQL-----KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352

Query: 617 KAM-MHGNN-NSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG 674
             + +  N  +       + L +++      L                  +DLS N    
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNS------LR----------------HLDLSFNGAI- 389

Query: 675 GIPEVVGKLNLLKGLNNISHNNLTGDIP-SLLRNLTEVESLDLSSNMLVGHIPTQLTSLK 733
            +      L  L+ L +  H+ L      S   +L ++  LD+S              L 
Sbjct: 390 IMSANFMGLEELQHL-DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 734 YLSVLNLSYNQFEGPIPQG 752
            L+ L ++ N F+      
Sbjct: 449 SLNTLKMAGNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  139 bits (351), Expect = 2e-34
 Identities = 77/421 (18%), Positives = 138/421 (32%), Gaps = 34/421 (8%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            S N L      S      L  L L    +    E   +  L +L  L ++ N +   + 
Sbjct: 39  LSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSP 97

Query: 406 LKVNSSF---PNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHG-RISSWMWDLG 460
                SF    +L  L      ++      +  L  L+  N++ N IH  ++ ++  +L 
Sbjct: 98  ----GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL- 152

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
            T L ++DLS N++  I       + +        +  LDM +N  +  I  +      L
Sbjct: 153 -TNLVHVDLSYNYIQTITVNDLQFLRENPQ----VNLSLDMSLNPID-FIQDQAFQGIKL 206

Query: 521 TNLNLNGNRLEG-PLPLSLVNCHHLEVLD------VGNNQINDNFPNWLEILPELQVLIL 573
             L L GN      +   L N   L V             +    P+ +E L ++ +   
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT 633
           R         D            + L+      +        ++++        +     
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF---- 322

Query: 634 PLNSSNYYESIILT-IKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLN 690
           P     + +S+ LT  KG     +  L     +DLS N            L    L+ L 
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL- 381

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPI 749
           ++S N     + +    L E++ LD   + L          SL+ L  L++SY   +   
Sbjct: 382 DLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 750 P 750
            
Sbjct: 441 D 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (297), Expect = 1e-27
 Identities = 72/371 (19%), Positives = 113/371 (30%), Gaps = 43/371 (11%)

Query: 389 NLKWLFVSNNRLSLSTKLKVNS--SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSK 445
           + K + +S N L     LK  S  +F  L  L LS C I          LH L    L+ 
Sbjct: 33  STKNIDLSFNPL---KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 446 NRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN 505
           N I          L  T+L  L      L ++E FP   +  L        K L++  N 
Sbjct: 90  NPIQSFSPGSFSGL--TSLENLVAVETKLASLESFPIGQLITL--------KKLNVAHNF 139

Query: 506 FNGKISQKFVNSC-NLTNLNLNGNRLEGPLPLSLVNCHHL----EVLDVGNNQINDNFPN 560
            +      + ++  NL +++L+ N ++      L            LD+  N I+    +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQD 198

Query: 561 WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM 620
                 +L  L LR N     I   T +       +  L   EF          N +   
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNI-MKTCLQNLAGLHVHRLILGEFKD------ERNLEIFE 251

Query: 621 HGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV 680
                 +    +     +             DI     L     + L+    +  + +V 
Sbjct: 252 PSIMEGLCDVTIDEFRLTY------TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVP 304

Query: 681 GKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 740
                     +I    L       L  L     L L+ N     I  +  +L  LS L+L
Sbjct: 305 KHFKWQS--LSIIRCQLKQFPTLDLPFLKS---LTLTMNKG--SISFKKVALPSLSYLDL 357

Query: 741 SYNQFEGPIPQ 751
           S N        
Sbjct: 358 SRNALSFSGCC 368

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LD+S +    +         L  +  L +A N F  + +S+ F+   +LT L+L S   +
Sbjct: 429 LDISYTNTKIDFDG--IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL-SKCQL 485

Query: 129 GSIPASI--DLINVSRL--STN---YLPIFAFSDCFQL 159
             I   +   L  +  L  S N   +L    ++  + L
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (347), Expect = 2e-35
 Identities = 76/383 (19%), Positives = 144/383 (37%), Gaps = 59/383 (15%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L   I   L    +   T++    +L+++  L V+  ++     ++      NL  L L+
Sbjct: 21  LAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKV---ASIQGIEYLTNLEYLNLN 74

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              I++   +   L +L    +  N+I   IS+      +T L  L L+ + +++I    
Sbjct: 75  GNQITDISPLSN-LVKLTNLYIGTNKIT-DISALQ---NLTNLRELYLNEDNISDISPL- 128

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
             N+T++          L++  N+    +S    N   L  L +  ++++   P++  N 
Sbjct: 129 -ANLTKM--------YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIA--NL 176

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSH 601
             L  L +  NQI D  P  L  L  L       N+    I D T +    R   + + +
Sbjct: 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ----ITDITPVANMTRLNSLKIGN 230

Query: 602 NEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTI 661
           N+ T + P   L     +  G N                    I  I  +       LT 
Sbjct: 231 NKITDLSPLANLSQLTWLEIGTNQ-------------------ISDINAVKD-----LTK 266

Query: 662 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML 721
              +++ SN+       V+  L+ L  L  +++N L  +   ++  LT + +L LS N +
Sbjct: 267 LKMLNVGSNQISD--ISVLNNLSQLNSLF-LNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 722 VGHIPTQLTSLKYLSVLNLSYNQ 744
               P  L SL  +   + +   
Sbjct: 324 TDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (276), Expect = 4e-26
 Identities = 53/273 (19%), Positives = 101/273 (36%), Gaps = 32/273 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           +  +N+++    S++  L NL  L L  + +   +++   A L  +  L +  N     +
Sbjct: 94  YIGTNKIT--DISALQNLTNLRELYLNEDNI---SDISPLANLTKMYSLNLGANH--NLS 146

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            L   S+   L  L ++   + +   I   L  L   +L+ N+I            +T+L
Sbjct: 147 DLSPLSNMTGLNYLTVTESKVKDVTPI-ANLTDLYSLSLNYNQIEDISPLA----SLTSL 201

Query: 465 YYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKISQ 512
           +Y     N +T+I      T +  L   +N          L+    L++  N  +  I+ 
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS-DIN- 259

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
              +   L  LN+  N++     L+  N   L  L + NNQ+ +     +  L  L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605
           L  N     I D   +    +    D ++    
Sbjct: 318 LSQN----HITDIRPLASLSKMDSADFANQVIK 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 2e-32
 Identities = 86/404 (21%), Positives = 143/404 (35%), Gaps = 49/404 (12%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L   +   L    ++ T        L  +  L      +     +       NL  +  S
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 76

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              +++    L+ L +L    ++ N+I            +T L  L L NN +T+I+   
Sbjct: 77  NNQLTDITP-LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDIDPLK 131

Query: 482 P-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR 529
             TN+ +L   SN          LT  + L    N           N   L  L+++ N+
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK 188

Query: 530 LEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIV 589
           +     L+     +LE L   NNQI+D  P  L IL  L  L L  N+    + D  T+ 
Sbjct: 189 VSDISVLA--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ----LKDIGTLA 240

Query: 590 PFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN---SVEVDYMTPLNSSNYYESIIL 646
                  +DL++N+ + + P   L     +  G N       +  +T L +    E+ + 
Sbjct: 241 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 300

Query: 647 TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
            I  I       L     + L  N      P  V  L  L+ L    +N ++    S L 
Sbjct: 301 DISPIS-----NLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSD--VSSLA 350

Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           NLT +  L    N +    P  L +L  ++ L L+   +     
Sbjct: 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (311), Expect = 6e-30
 Identities = 74/407 (18%), Positives = 141/407 (34%), Gaps = 62/407 (15%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
              +NQ++   P     L NL  L L SN +   +++   + L +L+ L   N      T
Sbjct: 118 TLFNNQITDIDPLK--NLTNLNRLELSSNTI---SDISALSGLTSLQQLSFGNQV----T 168

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            LK  ++   L  L +S+  +S+    L  L  L+    + N+I            +T L
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLG----ILTNL 223

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
             L L+ N L +I      ++T L          LD+  N  +            LT L 
Sbjct: 224 DELSLNGNQLKDIGTL--ASLTNL--------TDLDLANNQISNLAP--LSGLTKLTELK 271

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
           L  N++    PL+      L  L++  NQ+ D  P  +  L  L  L L  N     I D
Sbjct: 272 LGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN----ISD 323

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESI 644
            + +    + + +   +N+ + V     L N   +  G+N   ++  +  L         
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR------- 376

Query: 645 ILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSL 704
                         +T    + L+   +          +++   + N++   +    P+ 
Sbjct: 377 --------------IT---QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA---PAT 416

Query: 705 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
           + +       D++ N+   +      +      +      F G + Q
Sbjct: 417 ISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (310), Expect = 9e-30
 Identities = 89/416 (21%), Positives = 149/416 (35%), Gaps = 63/416 (15%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
                 +       V  L NL  +   +N+L+  T L     L  L  + ++NN++    
Sbjct: 52  QADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITPL---KNLTKLVDILMNNNQI---A 103

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            +   ++  NL GL L    I++    L+ L  L    LS N I   IS+     G+T+L
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISAL---SGLTSL 158

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTH-KVLDMRMNNFNGKISQK 513
             L   N           T + +L+  SN          LT+ + L    N  +      
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216

Query: 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573
                NL  L+LNGN+L+    L+  +  +L  LD+ NNQI++  P  L  L +L  L L
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT 633
            +N+    I + + +        ++L+ N+   + P   L N   +    NN        
Sbjct: 273 GANQ----ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-------- 320

Query: 634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
                      I  I  +       LT    +   +NK        +  L  +  L+   
Sbjct: 321 -----------ISDISPVSS-----LTKLQRLFFYNNKVSD--VSSLANLTNINWLS-AG 361

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 749
           HN ++   P  L NLT +  L L+             ++   + +         P 
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 5e-15
 Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 52/285 (18%)

Query: 469 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN 528
             +  +  I  F  T + +             +   N    +SQ  ++   +T L  +  
Sbjct: 9   TQDTPINQI--FTDTALAEK--------MKTVLGKTNVTDTVSQTDLD--QVTTLQADRL 56

Query: 529 RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI 588
            ++    +     ++L  ++  NNQ+ D  P  L+ L +L  +++ +N+    I D T +
Sbjct: 57  GIKSIDGVE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ----IADITPL 108

Query: 589 VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648
                   + L +N+ T + P   L N   +   +N   ++  ++ L S        L  
Sbjct: 109 ANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS--------LQQ 160

Query: 649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNL 708
                Q+  +  +                     L  L+ L+ IS N ++    S+L  L
Sbjct: 161 LSFGNQVTDLKPL-------------------ANLTTLERLD-ISSNKVSD--ISVLAKL 198

Query: 709 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
           T +ESL  ++N +    P  L  L  L  L+L+ NQ +      S
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  126 bits (318), Expect = 2e-30
 Identities = 80/413 (19%), Positives = 134/413 (32%), Gaps = 25/413 (6%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            S N L      S +    L +L L    +  T E   +  L +L  L ++ N +  S  
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLA 92

Query: 406 LKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
           L   S   +L  L     N++   +  +  L  L+  N++ N I        +   +T L
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNL 151

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            +LDLS+N + +I       + Q+       +  LD+ +N  N  I         L  L 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPL----LNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206

Query: 525 LNGNRLEGPLP-LSLVNCHHLEVLD------VGNNQINDNFPNWLEILPELQVLILRSNR 577
           L  N     +    +     LEV             +     + LE L  L +   R   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 578 FWG-PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
                                 L       V    Y   ++ +   N    +   +   +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK--FQGGIPEVVGKLNLLKGLNNISH 694
                     + KG +   E  L     +DLS N   F+G   +       LK L ++S 
Sbjct: 327 LKRLT---FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-DLSF 382

Query: 695 NNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPT-QLTSLKYLSVLNLSYNQFE 746
           N +   + S    L ++E LD   + L          SL+ L  L++S+    
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (295), Expect = 2e-27
 Identities = 66/413 (15%), Positives = 130/413 (31%), Gaps = 77/413 (18%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N ++  I    ++   L  L L +N  S          L  L+   +         
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 405 KLKV--NSSFPNLFGLGLSACNIS-------EFPDILRTLHQLQWFNLSKNRIHGRISSW 455
            L+    S+   L  L +    ++       +  D+   L  +  F+L    I  R+  +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF 300

Query: 456 MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515
            ++ G   L  ++        +      ++ +L F SN                     V
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFS-------------EV 344

Query: 516 NSCNLTNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573
           +  +L  L+L+ N L   G    S      L+ LD+  N +     +    L +L+ L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF 403

Query: 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT 633
           + +     + + +  +       +D+SH     V   G  +                   
Sbjct: 404 QHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG------------------ 443

Query: 634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI-PEVVGKLNLLKGLNNI 692
                                    L+    + ++ N FQ    P++  +L  L  L+ +
Sbjct: 444 -------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-L 477

Query: 693 SHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
           S   L    P+   +L+ ++ L+++SN L          L  L  + L  N +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (294), Expect = 2e-27
 Identities = 76/426 (17%), Positives = 133/426 (31%), Gaps = 50/426 (11%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           + N +      +   L +L  L      L+          LK LK L V++N +      
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLP 142

Query: 407 KVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWF----NLSKNRIHGRISSWMWDLGI 461
           +  S+  NL  L LS+  I       LR LHQ+       +LS N ++            
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN---FIQPGAFKE 199

Query: 462 TALYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
             L+ L L NNF + N+       +  L     +  +  +    N            CNL
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--GNLEKFDKSALEGLCNL 257

Query: 521 TNLNLNGNRLEG---PLPLSLVNCHHLEVLDVGNNQINDNFPN-WLEILPELQVLILRSN 576
           T        L+     +        ++    + +  I       +      L+++  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM-MHGNNNSVEVDYMTPL 635
           +F          +     + +  + N+         L + + + +  N            
Sbjct: 318 QF--------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG----------- 358

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN 695
                     L+ KG   Q +   T    +DLS N     +      L  L+ L+   H+
Sbjct: 359 ----------LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD-FQHS 406

Query: 696 NLTG-DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQ 754
           NL      S+  +L  +  LD+S              L  L VL ++ N F+        
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 465

Query: 755 FNTFRN 760
           F   RN
Sbjct: 466 FTELRN 471

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  116 bits (292), Expect = 4e-27
 Identities = 75/438 (17%), Positives = 150/438 (34%), Gaps = 54/438 (12%)

Query: 355 IPSSVYELENLILLRLPSNRLSGTTELY------------DFAKLKNLKWLFVSNNRLSL 402
           +P+  Y+   L   ++P N    T  L              F     L+ L +S   +  
Sbjct: 7   VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-- 64

Query: 403 STKLKVNS--SFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDL 459
              ++  +  S  +L  L L+   I          L  LQ     +  +    +  +  L
Sbjct: 65  -QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 460 GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN 519
               L  L++++N + + +   P   + L   +NL H  LD+  N               
Sbjct: 124 --KTLKELNVAHNLIQSFK--LPEYFSNL---TNLEH--LDLSSNKIQSIYCTDLRVLHQ 174

Query: 520 LTN----LNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILR 574
           +      L+L+ N +   +         L  L + NN  + N     ++ L  L+V  L 
Sbjct: 175 MPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 575 SNRFWGPIGDNTTIVPFPR----------FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNN 624
              F     +   +  F +               L++ ++         +    +   + 
Sbjct: 234 LGEF----RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 625 NSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLN 684
            SV ++ +   + +  ++ + L            L     +  +SNK      EV   L 
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLP 347

Query: 685 LLKGLNNISHNNLT--GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY 742
            L+ L ++S N L+  G         T ++ LDLS N ++  + +    L+ L  L+  +
Sbjct: 348 SLEFL-DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 743 NQFEGPIPQGSQFNTFRN 760
           +  +  + + S F + RN
Sbjct: 406 SNLKQ-MSEFSVFLSLRN 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (278), Expect = 2e-25
 Identities = 68/416 (16%), Positives = 130/416 (31%), Gaps = 79/416 (18%)

Query: 345 HFSSNQLSGSIPSSVYELENLIL----LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL 400
             SSN++     + +  L  + L    L L  N ++   +   F ++  L  L + NN  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFD 212

Query: 401 SLSTKLKVNSSFPNL------FGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRIS 453
           SL+           L       G   +  N+ +F    L  L  L         +   + 
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 454 SWM-WDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ 512
             +     +T +    L +  +  ++ F         ++    H  L++    F    + 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFS--------YNFGWQH--LELVNCKFGQFPTL 322

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN--DNFPNWLEILPELQV 570
           K  +   L  L    N+       S V+   LE LD+  N ++              L+ 
Sbjct: 323 KLKS---LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 571 LILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVD 630
           L L  N     I  ++  +   +   +D  H+    +       + + +++         
Sbjct: 378 LDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--------- 425

Query: 631 YMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690
                                             +D+S    +     +   L+ L+ L 
Sbjct: 426 ----------------------------------LDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 691 NISHNNLTGDIPS-LLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
            ++ N+   +    +   L  +  LDLS   L    PT   SL  L VLN++ NQ 
Sbjct: 452 -MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S      +       L +L +L++  N          F +L+NL +L +S  +L    
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QL 485

Query: 405 KLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMW 457
                +S  +L  L +++  +   P  I   L  LQ   L  N          +
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LDLS + L      + S F    ++ L+L+FN      +SS F  L  L  L+    + +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDF-QHSNL 408

Query: 129 GSIPASIDLINVSRLSTNYL 148
             +      +++  L    +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDI 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (303), Expect = 5e-29
 Identities = 75/406 (18%), Positives = 141/406 (34%), Gaps = 79/406 (19%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           + + ++   + P    E   + + RL                 +    L ++N  LS   
Sbjct: 40  YNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELELNNLGLS--- 84

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
              +    P+L  L  S  +++E P++ ++L  L   N +   +               L
Sbjct: 85  --SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL---------L 133

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            YL +SNN L  +      N + L        K++D+  N     + +      +L  + 
Sbjct: 134 EYLGVSNNQLEKLPELQ--NSSFL--------KIIDVDNN----SLKKLPDLPPSLEFIA 179

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
              N+LE  LP  L N   L  +   NN +             L+ ++  +N        
Sbjct: 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEEL--- 230

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY----MTPLNSSNY 640
              +   P    I   +N     LP     + +A+   +N   ++      +T L+ S  
Sbjct: 231 -PELQNLPFLTTIYADNNLLK-TLPDL-PPSLEALNVRDNYLTDLPELPQSLTFLDVSE- 286

Query: 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD 700
                    G+      +      ++ SSN+ +  + ++   L  L    N+S+N L  +
Sbjct: 287 -----NIFSGLSELPPNL----YYLNASSNEIRS-LCDLPPSLEEL----NVSNNKLI-E 331

Query: 701 IPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           +P+L   L     L  S N L   +P    +LK    L++ YN   
Sbjct: 332 LPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (284), Expect = 1e-26
 Identities = 67/420 (15%), Positives = 131/420 (31%), Gaps = 101/420 (24%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGT--------------TELYDFAKLKNLKW 392
           S N L+  +P     L++L++       LS                 +L +      LK 
Sbjct: 99  SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI 157

Query: 393 LFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRI 452
           + V NN L      K+    P+L  +      + E P++   L  L       N +    
Sbjct: 158 IDVDNNSLK-----KLPDLPPSLEFIAAGNNQLEELPELQN-LPFLTAIYADNNSLKKLP 211

Query: 453 SSWMWDLGITALYYLDLSNNFLTNIEYFP-PTNMTQLNFDSNLTHKVLDMRMNNFNGKIS 511
                     +L  +   NN L  +        +T +  D+N                + 
Sbjct: 212 DL------PLSLESIVAGNNILEELPELQNLPFLTTIYADNN---------------LLK 250

Query: 512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL 571
                  +L  LN+  N L   LP    +   L+V +   + ++       E+ P L  L
Sbjct: 251 TLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS-------ELPPNLYYL 302

Query: 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631
              SN          ++        +++S+N+    LP                      
Sbjct: 303 NASSNEIRSLCDLPPSL------EELNVSNNKLI-ELPA-----------------LPPR 338

Query: 632 MTPLN-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690
           +  L  S N+   +    +         L     + +  N  +   P++   +  L+  +
Sbjct: 339 LERLIASFNHLAEVPELPQN--------LK---QLHVEYNPLRE-FPDIPESVEDLRMNS 386

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           +++       +P L +NL +   L + +N L    P    S++    L ++  +   P  
Sbjct: 387 HLAE------VPELPQNLKQ---LHVETNPLR-EFPDIPESVED---LRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 6e-19
 Identities = 49/237 (20%), Positives = 91/237 (38%), Gaps = 32/237 (13%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           +  +N L  ++P       +L  L +  N L+   EL      ++L +L VS N  S   
Sbjct: 243 YADNNLLK-TLPD---LPPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFS--- 290

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
              ++   PNL+ L  S+  I    D+  +L +L   N+S N++   + +         L
Sbjct: 291 --GLSELPPNLYYLNASSNEIRSLCDLPPSLEEL---NVSNNKLI-ELPAL-----PPRL 339

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN----LTHKVLDMRMNNFNGKISQKFVNSCNL 520
             L  S N L  +   P  N+ QL+ + N           +     N  +++      NL
Sbjct: 340 ERLIASFNHLAEVPELP-QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNR 577
             L++  N L    P        +E L + + ++ D +    E   +L+  +   + 
Sbjct: 399 KQLHVETNPLRE-FPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 56/249 (22%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           +  +N L   +P     LE+++     +N L    EL +   L  L  ++  NN L    
Sbjct: 201 YADNNSLK-KLPDLPLSLESIVAG---NNIL---EELPELQNLPFLTTIYADNNLLK--- 250

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
              +    P+L  L +    +++ P++ ++L  L       + +     +         L
Sbjct: 251 --TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN---------L 299

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
           YYL+ S+N + ++   PP ++ +LN  +N               K+ +       L  L 
Sbjct: 300 YYLNASSNEIRSLCDLPP-SLEELNVSNN---------------KLIELPALPPRLERLI 343

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND-----------NFPNWLEILPE----LQ 569
            + N L   +P    N   L+ L V  N + +              + L  +PE    L+
Sbjct: 344 ASFNHLAE-VPELPQN---LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK 399

Query: 570 VLILRSNRF 578
            L + +N  
Sbjct: 400 QLHVETNPL 408

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 59/357 (16%), Positives = 111/357 (31%), Gaps = 79/357 (22%)

Query: 409 NSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRIS-----------SWMW 457
           N S   L      + N++E P     +     +  + +                  S + 
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 458 DLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS 517
           D      + L+L+N  L+++    P     L        + L    N+   ++ +   + 
Sbjct: 67  DCLDRQAHELELNNLGLSSL----PELPPHL--------ESLVASCNSLT-ELPELPQSL 113

Query: 518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNR 577
            +L   N N   L    P        LE L V NNQ+    P  L+    L+++ + +N 
Sbjct: 114 KSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNS 164

Query: 578 FWGPIGDNTTIVP--FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL 635
                      +P   P    I   +N+   +     L                  +T +
Sbjct: 165 L--------KKLPDLPPSLEFIAAGNNQLEELPELQNLPF----------------LTAI 200

Query: 636 N-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISH 694
              +N  + +              L    +I   +N  +      +  L  L  +    +
Sbjct: 201 YADNNSLKKLPDLPLS--------LE---SIVAGNNILE--ELPELQNLPFLTTIY-ADN 246

Query: 695 NNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
           N L   +P L  +L   E+L++  N L   +P    SL +L V    ++      P 
Sbjct: 247 NLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 75/287 (26%)

Query: 479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSL 538
           +  P N+      SN   +      +N   ++  +  N  + T      +  E   P   
Sbjct: 2   FINPRNV------SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN 54

Query: 539 VN-------------CHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN 585
                                L++ N  ++   P   E+ P L+ L+   N         
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP---ELPPHLESLVASCNSL------- 103

Query: 586 TTIVPFP----RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY 641
           T +   P       + + +    + + P                      +  L  SN  
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLPPL---------------------LEYLGVSNNQ 142

Query: 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI 701
              +  ++          +    ID+ +N  +  +P++   L  +       +N L  ++
Sbjct: 143 LEKLPELQN--------SSFLKIIDVDNNSLK-KLPDLPPSLEFI----AAGNNQLE-EL 188

Query: 702 PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 748
           P  L+NL  + ++   +N L   +P    SL+    +    N  E  
Sbjct: 189 PE-LQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILEEL 230

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (310), Expect = 7e-29
 Identities = 76/406 (18%), Positives = 140/406 (34%), Gaps = 47/406 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N +     SS   LE L LL L S     T +   F  L NL+ L + ++++    
Sbjct: 30  LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FL 88

Query: 405 KLKVNSSFPNLFGLGLSACNISEF---PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
                    +LF L L  C +S+        R L  L   +LSKN+I        +   +
Sbjct: 89  HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG-KL 147

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN-L 520
            +L  +D S+N +  +         +L      T     +  N+   ++S  +    N  
Sbjct: 148 NSLKSIDFSSNQIFLVCE------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
            N+ L    + G       N   +++    +N I+ +    L +   +       +    
Sbjct: 202 RNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 581 PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN-SSN 639
           P  +    +     R +DLSH     +        F+         ++V     LN + N
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNS----RVFE-----TLKDLKV-----LNLAYN 300

Query: 640 YYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTG 699
                   I  I  +    L     ++LS N            L  +  + ++  N++  
Sbjct: 301 K-------INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI-DLQKNHIAI 352

Query: 700 DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
                 + L ++++LDL  N L     T +  +  +  + LS N+ 
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  118 bits (298), Expect = 1e-27
 Identities = 82/427 (19%), Positives = 138/427 (32%), Gaps = 65/427 (15%)

Query: 345 HFSSNQLSG-SIPSSVYELENLILLRLPSNRLSGTTELYDFAKL--KNLKWLFVSNNRLS 401
             S NQ+    +  S  +L +L  +   SN++    E  +   L  K L +  ++ N L 
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLY 187

Query: 402 LSTKLKVNSSFPNLFGLGLSACNISEF------------------PDILRTLHQLQWFNL 443
               +           + L   ++S                       L   H +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 444 SKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM 503
             + I     +    L  +++ +LDLS+ F+ ++       +  L        KVL++  
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL--------KVLNLAY 299

Query: 504 NNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE 563
           N  N    + F    NL  LNL+ N L      +      +  +D+  N I        +
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN 623
            L +LQ L LR N         TTI   P    I LS N+    LP   L      +  N
Sbjct: 360 FLEKLQTLDLRDNAL-------TTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSEN 411

Query: 624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV-GK 682
                      L   +      L I                + L+ N+F     +    +
Sbjct: 412 RLENLDILYFLLRVPH------LQI----------------LILNQNRFSSCSGDQTPSE 449

Query: 683 LNLLKGL----NNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738
              L+ L    N +     T     +   L+ ++ L L+ N L    P   + L  L  L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 739 NLSYNQF 745
           +L+ N+ 
Sbjct: 510 SLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (266), Expect = 1e-23
 Identities = 55/332 (16%), Positives = 105/332 (31%), Gaps = 20/332 (6%)

Query: 420 LSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT-NIE 478
              CN+++ P +L T  +L    LS N I   +++  +   +  L  L+L + +    I+
Sbjct: 11  YRFCNLTQVPQVLNTTERL---LLSFNYIR-TVTASSFP-FLEQLQLLELGSQYTPLTID 65

Query: 479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL--PL 536
                N+  L        ++LD+  +         F    +L  L L    L   +    
Sbjct: 66  KEAFRNLPNL--------RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 537 SLVNCHHLEVLDVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR 595
              N   L  LD+  NQI           L  L+ +   SN+ +         +      
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQI 655
              L+ N     +   +        +     ++V       + +   +    I       
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN--GWTVDITGNFSNAISKSQAFS 235

Query: 656 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN-NISHNNLTGDIPSLLRNLTEVESL 714
             +    M      +  +         L      + ++SH  +      +   L +++ L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 715 DLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           +L+ N +          L  L VLNLSYN   
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.8 bits (228), Expect = 4e-19
 Identities = 55/310 (17%), Positives = 95/310 (30%), Gaps = 41/310 (13%)

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
                    LT +    P  +           + L +  N      +  F     L  L 
Sbjct: 7   RIAFYRFCNLTQV----PQVLNTT--------ERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 525 LNGNRLEGPL-PLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
           L        +   +  N  +L +LD+G+++I    P+  + L  L  L L        + 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGNN-NSVEVDYMTPLN-- 636
            +           +DLS N+   +          ++       N    V    + PL   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 637 -------SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK--------FQGGIPEV-V 680
                  ++N   S +    G  +   R +     +D+S N         F   I +   
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 681 GKLNLLKGLN--NISHNNLTGDIPSLLRNL--TEVESLDLSSNMLVGHIPTQLTSLKYLS 736
             L L   +       +N+     +    L  + V  LDLS   +         +LK L 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 737 VLNLSYNQFE 746
           VLNL+YN+  
Sbjct: 294 VLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 16/80 (20%), Positives = 30/80 (37%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           L L    L   +  +     L  + +L+L+ N      +   F +L SL  ++ SS+   
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 129 GSIPASIDLINVSRLSTNYL 148
                 ++ +    LS   L
Sbjct: 162 LVCEHELEPLQGKTLSFFSL 181

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           + LS + L  N+     L  +PH++ L L  N F+        S+  SL  L L  +   
Sbjct: 406 IHLSENRLE-NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 129 GSIPASIDLINVSRLS 144
            +    +       LS
Sbjct: 465 LAWETELCWDVFEGLS 480

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (302), Expect = 9e-29
 Identities = 57/425 (13%), Positives = 121/425 (28%), Gaps = 39/425 (9%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           + + L  ++ S      N+  L L  N LS  +   D A    L+ L +S+N L    + 
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVL---YET 73

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
               S   L  L L+   + E          ++  + + N I     S            
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG-----QGKKN 124

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC-NLTNLNL 525
           + L+NN +T +        +++        + LD+++N  +     +   S   L +LNL
Sbjct: 125 IYLANNKITMLRDLDEGCRSRV--------QYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 526 NGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN 585
             N +   +    V    L+ LD+ +N++        +    +  + LR+N+    +   
Sbjct: 177 QYNFIYD-VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL---VLIE 230

Query: 586 TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM---HGNNNSVEVDYMTPLNSSNYYE 642
             +         DL  N F       +    + +          +               
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 643 SIILTIKGIDIQIERILTIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNNISHNNLT 698
                 + +       L      + +    QG     +          + + +       
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI-DALKEQYR 349

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIP---TQLTSLKYLSVLNLSYNQFEGPIPQGSQF 755
             I  +        +L+     L   +         L       +   + +    + S  
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 756 NTFRN 760
              R 
Sbjct: 410 QLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (299), Expect = 2e-28
 Identities = 61/426 (14%), Positives = 129/426 (30%), Gaps = 52/426 (12%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS---LS 403
           S N LS    + +     L LL L SN L    E  D   L  L+ L ++NN +    + 
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVL---YETLDLESLSTLRTLDLNNNYVQELLVG 98

Query: 404 TKLKV------------NSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHG 450
             ++              S       + L+   I+   D       ++Q+ +L  N I  
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 451 RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI 510
            ++          L +L+L  NF+ +++        +L        K LD+  N     +
Sbjct: 159 -VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKL--------KTLDLSSNKLA-FM 206

Query: 511 SQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN-DNFPNWLEILPELQ 569
             +F ++  +T ++L  N+L   +  +L    +LE  D+  N  +     ++      +Q
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 570 VLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEV 629
            +  ++ +      +    VP     +           LP  + D   A+    +  +  
Sbjct: 266 TVAKQTVKKLTGQNEEECTVP----TLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSG 320

Query: 630 DYMTPLN------SSNYYESIILT---IKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV 680
                        +      I       + +  Q+       +T++         +    
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 681 GKLNLLKG--LNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738
                L G     +    L                +     M    +  Q      +   
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY---VEQQSVQNNAIRDW 437

Query: 739 NLSYNQ 744
           ++  ++
Sbjct: 438 DMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 45/251 (17%), Positives = 95/251 (37%), Gaps = 37/251 (14%)

Query: 497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND 556
           K+  +  ++    ++    ++ N+  L+L+GN L       L     LE+L++ +N + +
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 557 NFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNF 616
                LE L  L+ L L +N           ++  P    +  ++N  +  +        
Sbjct: 73  TLD--LESLSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNIS-RVSCSRGQGK 122

Query: 617 KAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG-G 675
           K +   NN                       I  +    E   +    +DL  N+     
Sbjct: 123 KNIYLANNK----------------------ITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 676 IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 735
             E+    + L+ L N+ +N +  D+   +    ++++LDLSSN L   +  +  S   +
Sbjct: 161 FAELAASSDTLEHL-NLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 736 SVLNLSYNQFE 746
           + ++L  N+  
Sbjct: 217 TWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 40/376 (10%), Positives = 103/376 (27%), Gaps = 24/376 (6%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           + ++N+++            +  L L  N +         A    L+ L +  N +    
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---Y 182

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            +K    F  L  L LS+  ++      ++   + W +L  N++   I   +       L
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS--QNL 239

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            + DL  N             T  +F S    +V  +          Q        T  +
Sbjct: 240 EHFDLRGNGFHCG--------TLRDFFSKNQ-RVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI----LPELQVLILRSNRFWG 580
                 E            L+  +        +    LE         + +     ++  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR- 349

Query: 581 PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY 640
               +   +       ++         +  G   + +          +++        + 
Sbjct: 350 -TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSP 408

Query: 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV---GKLNLLKGLNNISHNNL 697
            + +   +K  +       ++        + +Q    ++     +L  L G  +++  + 
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468

Query: 698 TGDIPSLLRNLTEVES 713
              +  L+     + S
Sbjct: 469 NATLQELVVREQNLAS 484

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734
            I E+    N  K    ++ ++L   + SL ++   V+ LDLS N L       L     
Sbjct: 1   AIHEIKQNGNRYKIEK-VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 735 LSVLNLSYNQFEGPIP 750
           L +LNLS N     + 
Sbjct: 60  LELLNLSSNVLYETLD 75

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (299), Expect = 5e-28
 Identities = 75/431 (17%), Positives = 152/431 (35%), Gaps = 56/431 (12%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
             S N LS S+ SS +  L +L  L L  N          F  L NL+ L + N      
Sbjct: 80  DLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
            +    +   +L  L + A ++  +    L+++  +    L  +     +  +   L  +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL--S 196

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KISQKFVNSCNL 520
           ++ YL+L +  L   ++ P       +    L  +   +   +FN   K+ +  +    +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 521 TNLNLNGNRL--------EGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
              +   N L        +    L  V    +  L +    +  +      +L +++ + 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
           + +++ +      +          +DLS N         YL N      G   S++    
Sbjct: 317 VENSKVFLV--PCSFSQHLKSLEFLDLSENLMV----EEYLKNSACK--GAWPSLQT--- 365

Query: 633 TPLN-SSNYYESIILTIKGIDIQIERILTIFM------TIDLSSNKFQGGIPEVVGKLNL 685
             L  S N+  S           +++   I +      ++D+S N F   +P+       
Sbjct: 366 --LVLSQNHLRS-----------MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 686 LKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
           ++ L N+S   +      + + L     LD+S+N L       L  L+    L +S N+ 
Sbjct: 412 MRFL-NLSSTGIRVVKTCIPQTLEV---LDVSNNNL-DSFSLFLPRLQ---ELYISRNKL 463

Query: 746 EGPIPQGSQFN 756
           +  +P  S F 
Sbjct: 464 KT-LPDASLFP 473

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (291), Expect = 4e-27
 Identities = 65/367 (17%), Positives = 127/367 (34%), Gaps = 28/367 (7%)

Query: 389 NLKWLFVSNNRLSLSTKLKVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSK 445
            +K L +S N++   T +      +  NL  L L +  I+    D   +L  L+  +LS 
Sbjct: 27  AMKSLDLSFNKI---TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 446 NRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMN 504
           N +    SSW   L  ++L YL+L  N    +       N+T L        + L +   
Sbjct: 84  NHLSSLSSSWFGPL--SSLKYLNLMGNPYQTLGVTSLFPNLTNL--------QTLRIGNV 133

Query: 505 NFNGKISQK-FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE 563
               +I +  F    +L  L +    L      SL +   +  L +  ++       + +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 564 ILPELQVLILRSNRFWG-PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG 622
           IL  ++ L LR                     + +    +  T       L   + ++  
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGK 682
           +    +   +  L   N  ES +++ +   ++          + +        +  V   
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVS-ELGKVE----TVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 683 LNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ---LTSLKYLSVLN 739
           L  +K +  + ++ +     S  ++L  +E LDLS N++V           +   L  L 
Sbjct: 309 LEKVKRI-TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 740 LSYNQFE 746
           LS N   
Sbjct: 368 LSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (290), Expect = 5e-27
 Identities = 67/420 (15%), Positives = 132/420 (31%), Gaps = 50/420 (11%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S N+++      +    NL +L L S+R++ T E   F  L +L+ L +S+N L   + L
Sbjct: 34  SFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL---SSL 89

Query: 407 KVN--SSFPNLFGLGLSACNISEFPD--ILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
             +      +L  L L            +   L  LQ   +        I    +  G+T
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLT 148

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTN 522
           +L  L++    L N +     ++  +          L + ++     +        ++  
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDI--------HHLTLHLSESAFLLEIFADILSSVRY 200

Query: 523 LNLNGNRLEG-----------PLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL 571
           L L    L               P+  +      + D   N++       LE L E++  
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE-LSEVEFD 259

Query: 572 ILRSNRF-WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVD 630
               N        ++  +    +   + +            YL    + ++     V+  
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF----YLFYDLSTVYSLLEKVKRI 315

Query: 631 YMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690
            +     ++        +  +     + L     +DLS N       +          L 
Sbjct: 316 TV----ENSK-------VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 691 --NISHNNLT--GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
              +S N+L        +L  L  + SLD+S N     +P      + +  LNLS     
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  108 bits (271), Expect = 1e-24
 Identities = 56/422 (13%), Positives = 130/422 (30%), Gaps = 62/422 (14%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
              + +    I    +  L +L  L + +  L    +      ++++  L +  +  +  
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESA-F 186

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFP----DILRTLHQLQWFNLSKNRIHGR-----ISS 454
                     ++  L L   N++ F      +      ++      + +        +  
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 455 WMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF 514
             + L ++ + + D + N L +        +++L     +T + L +        +S  +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 515 VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNF---PNWLEILPELQVL 571
                +  + +  +++         +   LE LD+  N + + +          P LQ L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTG--------YLDNFKAMMHGN 623
           +L  N           ++       +D+S N F   +P          +L+     +   
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN-----LSST 420

Query: 624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683
                                   I+ +   I + L +   +D+S+N     +      L
Sbjct: 421 G-----------------------IRVVKTCIPQTLEV---LDVSNNN----LDSFSLFL 450

Query: 684 NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
             L+ L  IS N L   +P        +  + +S N L          L  L  + L  N
Sbjct: 451 PRLQEL-YISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 744 QF 745
            +
Sbjct: 508 PW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.1 bits (229), Expect = 2e-19
 Identities = 48/337 (14%), Positives = 102/337 (30%), Gaps = 42/337 (12%)

Query: 412 FPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
              +  L LS   I+      LR    LQ   L  +RI+  I    +   + +L +LDLS
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFY-SLGSLEHLDLS 82

Query: 471 NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KISQKFVNSCNLTNLNL-NGN 528
           +N L+++       ++ L        K L++  N +    ++  F N  NL  L + N  
Sbjct: 83  DNHLSSLSSSWFGPLSSL--------KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 529 RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI 588
                  +       L  L++    + +     L+ + ++  L L  +            
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES--AFLLEIFA 192

Query: 589 VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI 648
                 R ++L                                     S    + +   +
Sbjct: 193 DILSSVRYLELRDTNLARFQF---------------------------SPLPVDEVSSPM 225

Query: 649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNL 708
           K +  +   +        L   ++   + EV      L GL + + +             
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285

Query: 709 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
             +  L +    L   + T  + L+ +  + +  ++ 
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 24/215 (11%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLS--GTTELYDFAKLKNLKWLFVSNNRL- 400
              ++++   +P S    L++L  L L  N +               +L+ L +S N L 
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 401 SLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
           S+    ++  +  NL  L +S       PD  +   ++++ NLS   I       +    
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-----RVVKTCI 429

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
              L  LD+SNN L +        + +L        + L +  N               L
Sbjct: 430 PQTLEVLDVSNNNLDSF----SLFLPRL--------QELYISRNKLKTLPDASLFP--VL 475

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN 555
             + ++ N+L+            L+ + +  N  +
Sbjct: 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.9 bits (213), Expect = 2e-17
 Identities = 50/350 (14%), Positives = 108/350 (30%), Gaps = 62/350 (17%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS- 403
                 L+    S +   E    ++  + R S  T+   F +L  L    +  + +    
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE-SFNELLKLLRYILELSEVEFDD 260

Query: 404 ------TKLKVNSS----------FPNLFGLGLSACNISE-FPDILRTLHQLQWFNLSKN 446
                      + S             +  L +    +      +   L +++   +  +
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 447 RIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNF 506
           ++   +        + +L +LDLS N +                  +L  + L +  N+ 
Sbjct: 321 KVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAW---PSL--QTLVLSQNHL 373

Query: 507 N--GKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI 564
               K  +  +   NLT+L+++ N    P+P S      +  L++ +  I         I
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC---I 429

Query: 565 LPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM-MHGN 623
              L+VL + +N        ++  +  PR + + +S N+   +           M +  N
Sbjct: 430 PQTLEVLDVSNNNL------DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN 483

Query: 624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ 673
                                   +K +   I   LT    I L +N + 
Sbjct: 484 Q-----------------------LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 34/278 (12%), Positives = 79/278 (28%), Gaps = 56/278 (20%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
            D  +   T+I    P+ +T     + +    LD+  N              NL  L L 
Sbjct: 10  CDGRSRSFTSI----PSGLT-----AAMKS--LDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
            +R+      +  +   LE LD+ +N ++    +W   L  L+ L L  N +   +G  +
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTS 117

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIIL 646
                   + + + + E    +         ++                           
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE------------------------- 152

Query: 647 TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
                             +++ +   +    + +  +  +  L  +  +     +     
Sbjct: 153 ------------------LEIKALSLRNYQSQSLKSIRDIHHL-TLHLSESAFLLEIFAD 193

Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 744
            L+ V  L+L    L     + L   +  S +     +
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 9e-12
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 47/230 (20%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
            + +L+L+ N++       L  C +L+VL + +++IN    +    L  L+ L L  N  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                 ++   P    + ++L  N +  +  T    N                       
Sbjct: 87  SSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN----------------------- 121

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNNISHNNL 697
                               LT   T+ + + +    I  +    L  L  L  I   +L
Sbjct: 122 --------------------LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE-IKALSL 160

Query: 698 TGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747
                  L+++ ++  L L  +     +      L  +  L L       
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (286), Expect = 3e-27
 Identities = 76/421 (18%), Positives = 136/421 (32%), Gaps = 74/421 (17%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN--SSFPNLFGLG 419
             ++ +     +   G  ++     L N K +   N+ +    KL      SF  +  L 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT----LNNQKIVTFKNSTM---RKLPAALLDSFRQVELLN 75

Query: 420 LSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE 478
           L+   I E         H +Q   +  N I   +   ++   +  L  L L  N L+++ 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NVPLLTVLVLERNDLSSLP 133

Query: 479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSL 538
                N  +L          L M  NN        F  + +L NL L+ NRL     + L
Sbjct: 134 RGIFHNTPKL--------TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDL 182

Query: 539 VNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP---FPRFR 595
                L   +V  N ++      L I   ++ L    N           +V         
Sbjct: 183 SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI--------NVVRGPVNVELT 229

Query: 596 IIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEVDYMTPLNSSNYYESIILTIKGID 652
           I+ L HN  T      +L N+  ++      N                       ++ I 
Sbjct: 230 ILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE----------------------LEKIM 264

Query: 653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVE 712
                 +     + +S+N+    +      +  LK L+ +SHN+L   +         +E
Sbjct: 265 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD-LSHNHLL-HVERNQPQFDRLE 321

Query: 713 SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGF 772
           +L L  N +V  +   L++   L  L LS+N ++      + F      +       C  
Sbjct: 322 NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKI 377

Query: 773 P 773
            
Sbjct: 378 D 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 1e-24
 Identities = 63/275 (22%), Positives = 110/275 (40%), Gaps = 27/275 (9%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
            F ++ +   +P+++      + LL L   ++    + Y FA    ++ L++  N +   
Sbjct: 51  TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI--- 105

Query: 404 TKLKVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
             L  +   + P L  L L   ++S  P  I     +L   ++S N +  RI    +   
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ-A 163

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH--------KVLDMRMNNFNGKISQ 512
            T+L  L LS+N LT+++     ++   N   NL          + LD   N+ N     
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
             V    LT L L  N L       L+N   L  +D+  N++     +    +  L+ L 
Sbjct: 224 VNVE---LTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
           + +NR       N    P P  +++DLSHN    V
Sbjct: 279 ISNNRLV---ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 47/271 (17%), Positives = 88/271 (32%), Gaps = 36/271 (13%)

Query: 488 LNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL 547
            N   +     + + M   +     + +   N   +    + +       L +   +E+L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
           ++ + QI +           +Q L +  N               P   ++ L  N+ +  
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 608 LPTGYLDNFKAM----MHGNN-NSVEVDYMTPLN-------SSNYYESIILTIKGIDIQI 655
           LP G   N   +    M  NN   +E D             SSN        +  +D+ +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-------LTHVDLSL 184

Query: 656 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLD 715
              L      ++S N         +     ++ L + SHN++      +   LT    L 
Sbjct: 185 IPSLF---HANVSYNLLS-----TLAIPIAVEEL-DASHNSINVVRGPVNVELTI---LK 232

Query: 716 LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           L  N L       L +   L  ++LSYN+ E
Sbjct: 233 LQHNNLT-DTAW-LLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 17/163 (10%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
               N L+    + +     L+ + L  N L      + F K++ L+ L++SNNRL    
Sbjct: 232 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV--- 285

Query: 405 KLKVNSSF---PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
              +N      P L  L LS  ++           +L+   L  N I   +         
Sbjct: 286 --ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTH---- 338

Query: 462 TALYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRM 503
             L  L LS+N            N+ +   D    H  +D ++
Sbjct: 339 HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQL 381

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (280), Expect = 1e-25
 Identities = 65/385 (16%), Positives = 128/385 (33%), Gaps = 76/385 (19%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
             ++ +     +   G  ++     L N K +   N+ +            P        
Sbjct: 29  FYDVHIDMQTQDVYFGFEDIT----LNNQKIVTFKNSTM---------RKLP-------- 67

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
                    +L +  Q++  NL+  +I   I ++ +      +  L +  N +  +    
Sbjct: 68  -------AALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV 118

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
             N+  L         VL +  N+ +      F N+  LT L+++ N LE     +    
Sbjct: 119 FQNVPLL--------TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSH 601
             L+ L + +N++       L ++P L    +  N         +T+        +D SH
Sbjct: 171 TSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL-------STLAIPIAVEELDASH 220

Query: 602 NEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTI 661
           N    V+          +   +NN  +  ++             L               
Sbjct: 221 NSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPG--------LV-------------- 257

Query: 662 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML 721
              +DLS N+ +  +     K+  L+ L  IS+N L   +    + +  ++ LDLS N L
Sbjct: 258 --EVDLSYNELEKIMYHPFVKMQRLERL-YISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

Query: 722 VGHIPTQLTSLKYLSVLNLSYNQFE 746
           + H+         L  L L +N   
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (267), Expect = 5e-24
 Identities = 63/276 (22%), Positives = 113/276 (40%), Gaps = 29/276 (10%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
            F ++ +   +P+++ +    + LL L   ++    + Y FA    ++ L++  N +   
Sbjct: 57  TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI--- 111

Query: 404 TKLKVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
             L  +   + P L  L L   ++S  P  I     +L   ++S N +  RI    +   
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ-A 169

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH-------KVLDMRMNNFNGKISQ 512
            T+L  L LS+N LT+++     ++   N   N L+        + LD   N+ N     
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
             V    LT L L  N L       L+N   L  +D+  N++     +    +  L+ L 
Sbjct: 230 VNV---ELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 573 LRSNRFWGPIGD-NTTIVPFPRFRIIDLSHNEFTGV 607
           + +NR    +   N    P P  +++DLSHN    V
Sbjct: 285 ISNNR----LVALNLYGQPIPTLKVLDLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 97.7 bits (243), Expect = 4e-21
 Identities = 48/316 (15%), Positives = 103/316 (32%), Gaps = 29/316 (9%)

Query: 435 LHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL 494
            +   ++++  +     +     D+ +     +   N+ +  +      +  Q+      
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV------ 77

Query: 495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQI 554
             ++L++         +  F  +  +  L +  N +    P    N   L VL +  N +
Sbjct: 78  --ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 555 NDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLD 614
           +          P+L  L + +N     I D+ T       + + LS N  T  +    + 
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLER-IEDD-TFQATTSLQNLQLSSNRLT-HVDLSLIP 192

Query: 615 NFKAMMHGNNNSVEVDYMTPLN----SSNYYESIILTIKGIDIQIERILTIFMTIDLSSN 670
           +        N    +     +     S N        I  +   +   LT    + L  N
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASHNS-------INVVRGPVNVELT---ILKLQHN 242

Query: 671 KFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLT 730
                    +     L  + ++S+N L   +      +  +E L +S+N LV  +     
Sbjct: 243 NLTD--TAWLLNYPGLVEV-DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 298

Query: 731 SLKYLSVLNLSYNQFE 746
            +  L VL+LS+N   
Sbjct: 299 PIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.5 bits (240), Expect = 9e-21
 Identities = 59/278 (21%), Positives = 101/278 (36%), Gaps = 39/278 (14%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
           +   N +   +P  V   +  L +L L  N LS +     F     L  L +SNN L   
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL--- 159

Query: 404 TKLKVN--SSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
            +++ +   +  +L  L LS+  ++     L  +  L   N+S N +   ++        
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS-TLA------IP 210

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ--KFVNSCN 519
            A+  LD S+N +  +       +T L    N                ++     +N   
Sbjct: 211 IAVEELDASHNSINVVRGPVNVELTILKLQHN---------------NLTDTAWLLNYPG 255

Query: 520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW 579
           L  ++L+ N LE  +    V    LE L + NN++      + + +P L+VL L  N   
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

Query: 580 GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFK 617
             +  N     F R   + L HN     L        K
Sbjct: 315 H-VERNQP--QFDRLENLYLDHNSIV-TLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 49/290 (16%), Positives = 90/290 (31%), Gaps = 39/290 (13%)

Query: 469 LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN 528
              N        P       N   +     + + M   +     + +   N   +    +
Sbjct: 5   QRYNVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 529 RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI 588
            +       L +   +E+L++ + QI +           +Q L +  N            
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVF 119

Query: 589 VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGNN-NSVEVDYMTPLN------- 636
              P   ++ L  N+ +  LP G   N   +    M  NN   +E D             
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN 696
           SSN        +  +D+ +   L      ++S N         +     ++ L + SHN+
Sbjct: 179 SSN-------RLTHVDLSLIPSLF---HANVSYNLLS-----TLAIPIAVEEL-DASHNS 222

Query: 697 LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           +      +   LT    L L  N L       L +   L  ++LSYN+ E
Sbjct: 223 INVVRGPVNVELTI---LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (276), Expect = 2e-25
 Identities = 58/292 (19%), Positives = 107/292 (36%), Gaps = 36/292 (12%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
             + N +S ++    +  L NL  L L SNRL     L  F  L NL  L +S N++   
Sbjct: 62  ELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI--- 116

Query: 404 TKLKVN--SSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
             L         NL  L +   ++          L+ L+   L K  +   I +      
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT-EALSH 174

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
           +  L  L L +  +  I  +    + +L        KVL++    +   ++   +   NL
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRL--------KVLEISHWPYLDTMTPNCLYGLNL 226

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
           T+L++    L     L++ +  +L  L++  N I+    + L  L  LQ + L   +   
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-- 284

Query: 581 PIGDNTTIVP-----FPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGN 623
                  + P         R++++S N+ T  L      +   +    +  N
Sbjct: 285 -----AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 9e-21
 Identities = 63/338 (18%), Positives = 109/338 (32%), Gaps = 62/338 (18%)

Query: 412 FPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
                 L L    I     D   +   L+   L++N +   +    ++  +  L  L L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFN-NLFNLRTLGLR 88

Query: 471 NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRL 530
           +N L  I     T ++ L          LD+  N     +   F +  NL +L +  N L
Sbjct: 89  SNRLKLIPLGVFTGLSNL--------TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 531 EGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP 590
                 +    + LE L +    +       L  L  L VL LR       I D +    
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYS-FKR 198

Query: 591 FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKG 650
             R +++++SH  +   +    L                                     
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLN--------------------------------- 225

Query: 651 IDIQIERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNNISHNNLTGDIPSLLRNLT 709
                   LT   ++ ++       +P +    L  L+ LN +S+N ++    S+L  L 
Sbjct: 226 --------LT---SLSITHCNLTA-VPYLAVRHLVYLRFLN-LSYNPISTIEGSMLHELL 272

Query: 710 EVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFE 746
            ++ + L    L   +       L YL VLN+S NQ  
Sbjct: 273 RLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.5 bits (230), Expect = 9e-20
 Identities = 63/403 (15%), Positives = 122/403 (30%), Gaps = 93/403 (23%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
              +   ++P  +       LL L  NR+  T    +FA   +L+ L ++ N +S    +
Sbjct: 19  HRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS---AV 71

Query: 407 KVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
           +    ++  NL  LGL +  +   P  +   L  L   ++S+N+I   +  +M+   +  
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ-DLYN 129

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523
           L  L++ +N L  I +   + +  L        + L +   N     ++   +   L  L
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSL--------EQLTLEKCNLTSIPTEALSHLHGLIVL 181

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
            L    +      S    + L+VL++ +    D           L  L +        + 
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVP 240

Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES 643
               +      R ++LS+N  +  +    L                              
Sbjct: 241 YL-AVRHLVYLRFLNLSYNPIS-TIEGSMLHE---------------------------- 270

Query: 644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPS 703
                          L     I L   +                 L  +      G    
Sbjct: 271 ---------------LLRLQEIQLVGGQ-----------------LAVVEPYAFRG---- 294

Query: 704 LLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQF 745
               L  +  L++S N L   +   +  S+  L  L L  N  
Sbjct: 295 ----LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPL 332

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (270), Expect = 9e-25
 Identities = 68/402 (16%), Positives = 139/402 (34%), Gaps = 57/402 (14%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           ++ ++  +   S  +L  L  L   ++ +   T++    KL  L  L  ++N +   T L
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNI---TTL 79

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
            + S   NL  L   +  ++     +  L +L + N   N++     S         L Y
Sbjct: 80  DL-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQN-----PLLTY 131

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           L+ + N LT I+    T +T+L+              +               LT L+ +
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDC-------------HLNKKITKLDVTPQTQLTTLDCS 178

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI--LPELQVLILRSNRFWG-PIG 583
            N++     L +     L  L+   N I       L++    +L  L   SN+     + 
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITK-----LDLNQNIQLTFLDCSSNKLTEIDVT 230

Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES 643
             T +         D S N  T  L    L     +     + +E+D         +   
Sbjct: 231 PLTQL------TYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE 283

Query: 644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPS 703
               IK +D+      T    +D  +      +   + +   L  L  +++  LT ++  
Sbjct: 284 GCRKIKELDV---THNTQLYLLDCQAAGITE-LD--LSQNPKLVYLY-LNNTELT-ELD- 334

Query: 704 LLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
            + + T+++SL   +  +     + +  +  L+    +  Q 
Sbjct: 335 -VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 53/303 (17%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           + + N L+  I  S      L  L    N+        D      L  L  S N++   T
Sbjct: 133 NCARNTLT-EIDVS--HNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKI---T 183

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI--- 461
           +L V S    L  L     NI++    L    QL + + S N++         ++ +   
Sbjct: 184 ELDV-SQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT--------EIDVTPL 232

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
           T L Y D S N LT ++    + +T L+         +D+  N               L 
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD-LLEIDLTHNT-------------QLI 278

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI--LPELQVLILRSNRF- 578
                G R    L ++  +   L +LD     I +     L++   P+L  L L +    
Sbjct: 279 YFQAEGCRKIKELDVT--HNTQLYLLDCQAAGITE-----LDLSQNPKLVYLYLNNTELT 331

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
              +  NT +      + +   +         G +            ++ +   T  N+S
Sbjct: 332 ELDVSHNTKL------KSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 639 NYY 641
              
Sbjct: 386 LTI 388

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 51/262 (19%), Positives = 83/262 (31%), Gaps = 39/262 (14%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           +  +N ++  +  +  +   L  L   SN+L+      D   L  L +   S N L   T
Sbjct: 197 NCDTNNIT-KLDLN--QNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPL---T 246

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
           +L V S+   L  L     ++ E    L    QL +F     R    +         T L
Sbjct: 247 ELDV-STLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELDVTHN----TQL 299

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523
           Y LD     +T ++      +  L  ++  LT   LD+  N               L +L
Sbjct: 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTE--LDVSHNT-------------KLKSL 344

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
           +     ++     S+     L        Q         E L    + I  S       G
Sbjct: 345 SCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPK---ETLTNNSLTIAVSPDLLDQFG 399

Query: 584 DNTTIVPFPRFRIIDLSHNEFT 605
           +   I P     + D + N  T
Sbjct: 400 NPMNIEPGD-GGVYDQATNTIT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.6 bits (168), Expect = 3e-12
 Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 34/260 (13%)

Query: 491 DSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVG 550
           D N   +V           IS++ +    LT+L+ + + +     +       L  L   
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLA--TLTSLDCHNSSITDMTGIE--KLTGLTKLICT 72

Query: 551 NNQINDNFPNWLEI--LPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL 608
           +N I       L++     L  L   SN+       N  + P  +   ++   N+ T  L
Sbjct: 73  SNNITT-----LDLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTNKLTK-L 121

Query: 609 PTGYLDNFKAMMHGNNN--SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTID 666
                     +    N    ++V + T L   + + +  +T   +        T   T+D
Sbjct: 122 DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP-----QTQLTTLD 176

Query: 667 LSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP 726
            S NK    +   V +  LL  LN    NN+T  +   L    ++  LD SSN L   I 
Sbjct: 177 CSFNKITE-LD--VSQNKLLNRLN-CDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID 228

Query: 727 TQLTSLKYLSVLNLSYNQFE 746
             +T L  L+  + S N   
Sbjct: 229 --VTPLTQLTYFDCSVNPLT 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (261), Expect = 1e-24
 Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 30/265 (11%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS-LSTK 405
           +S  L+ S+P+ +    +   L L SN+L  +     F KL  L  L +S+N LS     
Sbjct: 15  NSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
            + +    +L  L LS   +         L QL+  +   + +  ++S +   L +  L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLI 129

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-SQKFVNSCNLTNLN 524
           YLD+S+             ++ L        +VL M  N+F        F    NLT L+
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSL--------EVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
           L+  +LE   P +  +   L+VL++ +N          + L  LQVL    N        
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI------ 235

Query: 585 NTTIVPFPRF-------RIIDLSHN 602
                              ++L+ N
Sbjct: 236 --MTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 9e-21
 Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 21/241 (8%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLS-GTTELYDFAKLKNLKWLFVSNNRL-S 401
              SN+L  S+P  V  +L  L  L L SN LS             +LK+L +S N + +
Sbjct: 34  ELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92

Query: 402 LSTKLKVNSSFPNLFGLGLSACNISEFPD--ILRTLHQLQWFNLSKNRIHGRISSWMWDL 459
           +S+          L  L     N+ +  +  +  +L  L + ++S         + +++ 
Sbjct: 93  MSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN- 147

Query: 460 GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK-FVNSC 518
           G+++L  L ++ N  +  E F P   T+L    NLT   LD+       ++S   F +  
Sbjct: 148 GLSSLEVLKMAGN--SFQENFLPDIFTEL---RNLTF--LDLSQCQLE-QLSPTAFNSLS 199

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPE-LQVLILRSNR 577
           +L  LN++ N             + L+VLD   N I  +    L+  P  L  L L  N 
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

Query: 578 F 578
           F
Sbjct: 260 F 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 58/330 (17%), Positives = 106/330 (32%), Gaps = 87/330 (26%)

Query: 420 LSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE 478
            ++  ++  P  I  +  +L    L  N++   +   ++D  +T L  L LS+N L+   
Sbjct: 14  CNSKGLTSVPTGIPSSATRL---ELESNKLQ-SLPHGVFD-KLTQLTKLSLSSNGLSFKG 68

Query: 479 YFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLS 537
               ++          T  K LD+  N     +S  F+    L +L+   + L+     S
Sbjct: 69  CCSQSD-------FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 538 L-VNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI 596
           + ++  +L  LD+ +      F      L  L+VL                         
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL------------------------- 155

Query: 597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE 656
             ++ N F            + +                                     
Sbjct: 156 -KMAGNSFQENFLPDIFTELRNLTF----------------------------------- 179

Query: 657 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDL 716
                   +DLS  + +   P     L+ L+ L N+SHNN         + L  ++ LD 
Sbjct: 180 --------LDLSQCQLEQLSPTAFNSLSSLQVL-NMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 717 SSNMLVGHIPTQLTSL-KYLSVLNLSYNQF 745
           S N ++     +L      L+ LNL+ N F
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 48/301 (15%), Positives = 92/301 (30%), Gaps = 70/301 (23%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           +  ++  LT++    PT        S+ T   L++  N         F     LT L+L+
Sbjct: 12  IRCNSKGLTSV----PTG-----IPSSATR--LELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 527 GNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
            N L   G    S      L+ LD+  N +     +    L +L+ L  + +     + +
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSE 118

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESI 644
            +  +       +D+SH     V   G  +                 ++ L         
Sbjct: 119 FSVFLSLRNLIYLDISHTHTR-VAFNGIFNG----------------LSSLE-------- 153

Query: 645 ILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN-----ISHNNLTG 699
                               + ++ N FQ          ++   L N     +S   L  
Sbjct: 154 -------------------VLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQ 189

Query: 700 DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFR 759
             P+   +L+ ++ L++S N            L  L VL+ S N       +    +   
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPS 248

Query: 760 N 760
           +
Sbjct: 249 S 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 12/86 (13%)

Query: 664 TIDLSSNKFQ---GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNM 720
            I  +S        GIP    +L L         N L      +   LT++  L LSSN 
Sbjct: 11  EIRCNSKGLTSVPTGIPSSATRLEL-------ESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 721 L--VGHIPTQLTSLKYLSVLNLSYNQ 744
           L   G           L  L+LS+N 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNG 89

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (262), Expect = 2e-24
 Identities = 60/266 (22%), Positives = 104/266 (39%), Gaps = 28/266 (10%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-SL 402
              +N+++  I    ++ L+NL  L L +N++S       FA L  L+ L++S N+L  L
Sbjct: 58  DLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKEL 115

Query: 403 STKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIH-GRISSWMWDLG 460
             K+        L  L +    I++    +   L+Q+    L  N +    I +  +  G
Sbjct: 116 PEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-G 169

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
           +  L Y+ +++  +T I    P ++T+L+ D N   KV                    NL
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA-----------ASLKGLNNL 218

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF-- 578
             L L+ N +      SL N  HL  L + NN++    P  L     +QV+ L +N    
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277

Query: 579 --WGPIGDNTTIVPFPRFRIIDLSHN 602
                            +  + L  N
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 40/243 (16%), Positives = 85/243 (34%), Gaps = 28/243 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           + S NQL   +P  +   + L  LR+  N ++   +   F  L  +  + +  N L  S+
Sbjct: 106 YLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLK-SS 160

Query: 405 KLKVN--SSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
            ++         L  + ++  NI+  P  L     L   +L  N+I  ++ +     G+ 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKIT-KVDAASLK-GLN 216

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTN 522
            L  L LS N ++ ++     N   L        + L +  N    K+     +   +  
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHL--------RELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 523 LNLNGNRLEG------PLPLSLVNCHHLEVLDVGNNQINDNF--PNWLEILPELQVLILR 574
           + L+ N +          P           + + +N +      P+    +     + L 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 575 SNR 577
           + +
Sbjct: 328 NYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 63/291 (21%), Positives = 97/291 (33%), Gaps = 72/291 (24%)

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK-FVNSCNL 520
                LDL NN +T I+     N+  L          L +  N  + KIS   F     L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKIS-KISPGAFAPLVKL 102

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
             L L+ N+L+  LP  +     L+ L V  N+I     +    L ++ V+ L +N    
Sbjct: 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 581 PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY 640
              +N       +   I ++    T + P G   +                         
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTI-PQGLPPS------------------------- 193

Query: 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN-----ISHN 695
                             LT    + L  NK    +         LKGLNN     +S N
Sbjct: 194 ------------------LT---ELHLDGNKITK-VDA-----ASLKGLNNLAKLGLSFN 226

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           +++      L N   +  L L++N LV  +P  L   KY+ V+ L  N   
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 8e-16
 Identities = 48/350 (13%), Positives = 96/350 (27%), Gaps = 89/350 (25%)

Query: 412 FPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
            P+   L L    I+E      + L  L    L  N+I  +IS   +   +  L  L LS
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFA-PLVKLERLYLS 108

Query: 471 NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRL 530
            N L  +    P                                     L  L ++ N +
Sbjct: 109 KNQLKELPEKMPKT-----------------------------------LQELRVHENEI 133

Query: 531 EGPLPLSLVNCHHLEVLDVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGDNTTI 588
                      + + V+++G N +  +       + + +L  + +             T 
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--------TT 185

Query: 589 VP---FPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGNNNSVEVDYMTPLNSSNYY 641
           +P    P    + L  N+ T  +    L     +    +  N+                 
Sbjct: 186 IPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS----------------- 227

Query: 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTG-- 699
                 I  +D            + L++NK    +P  +     ++ +  + +NN++   
Sbjct: 228 ------ISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY-LHNNNISAIG 279

Query: 700 ----DIPSLLRNLTEVESLDLSSNML-VGHIPTQL-TSLKYLSVLNLSYN 743
                 P           + L SN +    I       +   + + L   
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 28/110 (25%)

Query: 343 EPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTE-----LYDFAKLKNLKWLFVSN 397
           E H ++N+L   +P  + + + + ++ L +N +S              K  +   + + +
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 398 NRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNR 447
           N +                        I   P   R ++      L   +
Sbjct: 303 NPVQYW--------------------EIQ--PSTFRCVYVRAAVQLGNYK 330

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  105 bits (265), Expect = 3e-24
 Identities = 77/422 (18%), Positives = 132/422 (31%), Gaps = 82/422 (19%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N ++    +S   L++L  L++             F  L +L  L +  N+     
Sbjct: 36  DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF---L 92

Query: 405 KLKVN--SSFPNLFGLGLSACNISEF---PDILRTLHQLQWFNLSKNRIHGRISSWMWDL 459
           +L+    +   NL  L L+ CN+       +  + L  L+   L  N I  +I    + L
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFL 151

Query: 460 GITALYYLDLSNNFLTNIE-----YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF 514
            +   + LDL+ N + +I       F   + T L   S     + DM       +     
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI---TLQDMNEYWLGWEKCGNP 208

Query: 515 VNSCNLTNLNLNGNRLEGPLP---LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL 571
             + ++T L+L+GN  +  +       +    ++ L + N+       N           
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY------NMGSSFGHTNFK 262

Query: 572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631
              +  F G                 DLS ++    L      +                
Sbjct: 263 DPDNFTFKGLEASGVKTC--------DLSKSKIF-ALLKSVFSH---------------- 297

Query: 632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN 691
                                       T    + L+ N+           L  L  LN 
Sbjct: 298 ---------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN- 329

Query: 692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQFEGPIP 750
           +S N L      +  NL ++E LDLS N +   +  Q    L  L  L L  NQ +  +P
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKS-VP 387

Query: 751 QG 752
            G
Sbjct: 388 DG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 55/308 (17%), Positives = 103/308 (33%), Gaps = 56/308 (18%)

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK-FVNSCNLTNLN 524
           Y+DLS N +  +     T+ ++L    +L    L +        I    F    +L  L 
Sbjct: 34  YVDLSLNSIAEL---NETSFSRL---QDLQF--LKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPI 582
           L+ N+       +     +LEVL +    ++      N+ + L  L++L+LR N      
Sbjct: 86  LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI---- 141

Query: 583 GDNTTIVPFPRF------RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
                I P   F       ++DL+ N+    +    L NF+                   
Sbjct: 142 ---KKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR----------L 187

Query: 637 SSNYYESI-ILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN 695
           SS   + +    +           T   T+DLS N F+  + +          + ++  +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 696 NLTGDIPSLLRN--------------LTEVESLDLSSNMLV---GHIPTQLTSLKYLSVL 738
           N      S                   + V++ DLS + +      + +  T L+    L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ---L 304

Query: 739 NLSYNQFE 746
            L+ N+  
Sbjct: 305 TLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 14/172 (8%)

Query: 330 WLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELE--NLILLRLPSNRLSGTTELYDFAKL 387
            +Q  +    +     F           +   LE   +    L  +++        F+  
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHF 298

Query: 388 KNLKWLFVSNNRLSLSTKLKVNS--SFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLS 444
            +L+ L ++ N +    K+  N+     +L  L LS   +      +   L +L+  +LS
Sbjct: 299 TDLEQLTLAQNEI---NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355

Query: 445 KNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE---YFPPTNMTQLNFDSN 493
            N I   +    +  G+  L  L L  N L ++    +   T++ ++   +N
Sbjct: 356 YNHIR-ALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 42/282 (14%), Positives = 75/282 (26%), Gaps = 56/282 (19%)

Query: 497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPL-SLVNCHHLEVLDVGNNQIN 555
             +D+ +N+        F    +L  L +        +   +      L +L +  NQ  
Sbjct: 33  NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 556 DNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDN 615
                    L  L+VL L      G +       P     ++ L  N    + P  +  N
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 616 FKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK---- 671
                                                      +  F  +DL+ NK    
Sbjct: 153 -------------------------------------------MRRFHVLDLTFNKVKSI 169

Query: 672 ----FQGGIPEVVGKLNLLK-GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP 726
                     +    L L    L +++   L  +        T + +LDLS N     + 
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 727 ---TQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVG 765
                  +   +  L LS +   G     + F    N ++ G
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 37/215 (17%), Positives = 64/215 (29%), Gaps = 34/215 (15%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWL----------- 393
             +   L      + ++  ++  L L  N    +     F  +   K             
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 394 --FVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHG 450
             F   N                +    LS   I      +      L+   L++N I+ 
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN- 312

Query: 451 RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLN----------------FDSNL 494
           +I    +  G+T L  L+LS NFL +I+     N+ +L                 F   L
Sbjct: 313 KIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GL 370

Query: 495 TH-KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN 528
            + K L +  N         F    +L  + L+ N
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 3e-23
 Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 29/239 (12%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
            S  L       + + +            +     +  A   N +    +   L  +  L
Sbjct: 21  GSTALR-PYHDVLSQWQRHYNADR-----NRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
             +++ P    L L +  + +FPD    L  LQ   +    +   +   M       L  
Sbjct: 75  LEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF--AGLET 131

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN---------FNGKISQKFVNS 517
           L L+ N L  +    P ++  L   + L    L +R             +   S +    
Sbjct: 132 LTLARNPLRAL----PASIASL---NRLRE--LSIRACPELTELPEPLASTDASGEHQGL 182

Query: 518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
            NL +L L    +   LP S+ N  +L+ L + N+ ++      +  LP+L+ L LR  
Sbjct: 183 VNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 6e-21
 Identities = 48/249 (19%), Positives = 84/249 (33%), Gaps = 45/249 (18%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL-YDFAKLKNLKWLFVSNNRLSLSTK 405
            S  L    P   + L +L  + + +  L    EL     +   L+ L ++ N L     
Sbjct: 89  RSVPLP-QFPDQAFRLSHLQHMTIDAAGL---MELPDTMQQFAGLETLTLARNPLR---- 140

Query: 406 LKVNSSFPNLFG-------LGLSACN-ISEFPD---------ILRTLHQLQWFNLSKNRI 448
                + P           L + AC  ++E P+           + L  LQ   L    I
Sbjct: 141 -----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 449 HGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG 508
              + + + +L    L  L + N+ L+ +       +  L     L    LD+R      
Sbjct: 196 R-SLPASIANL--QNLKSLKIRNSPLSAL----GPAIHHL---PKLEE--LDLRGCTALR 243

Query: 509 KISQKFVNSCNLTNLNL-NGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPE 567
                F     L  L L + + L   LPL +     LE LD+         P+ +  LP 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 568 LQVLILRSN 576
             ++++  +
Sbjct: 303 NCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 8e-13
 Identities = 42/336 (12%), Positives = 80/336 (23%), Gaps = 92/336 (27%)

Query: 418 LGLSACN-ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTN 476
           L       +  + D+L    +    + ++     R ++               +   L  
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------SNNPQIETRTGRALKA 70

Query: 477 IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPL 536
                   +                                     L L    L    P 
Sbjct: 71  T----ADLLEDAT---------------------------QPGRVALELRSVPLPQ-FPD 98

Query: 537 SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP-----F 591
                 HL+ + +    +    P+ ++    L+ L L  N            +P      
Sbjct: 99  QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL--------RALPASIASL 149

Query: 592 PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGI 651
            R R + +        LP                                E +  T    
Sbjct: 150 NRLRELSIRACPELTELP--------------------------------EPLASTDASG 177

Query: 652 DIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEV 711
           + Q    L       L     +  +P  +  L  LK L  I ++ L+  +   + +L ++
Sbjct: 178 EHQGLVNLQSL---RLEWTGIRS-LPASIANLQNLKSLK-IRNSPLSA-LGPAIHHLPKL 231

Query: 712 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLS-YNQFE 746
           E LDL     + + P        L  L L   +   
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL-YDFAKLKNLKWLFVS-NNRL-S 401
                 +  S+P+S+  L+NL  L++ ++ L   + L      L  L+ L +     L +
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNSPL---SALGPAIHHLPKLEELDLRGCTALRN 244

Query: 402 LSTKLKVNSSFPNLFGLGLSACN-ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
                        L  L L  C+ +   P  +  L QL+  +L       R+ S +  L 
Sbjct: 245 YPPIF---GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL- 300

Query: 461 ITALYYLDLSNNFLTNI 477
             A   + +  +    +
Sbjct: 301 -PANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 47/244 (19%)

Query: 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL-- 573
           +S    NL   G+    P    L         D        N  +            +  
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQIET 62

Query: 574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT--GYLDNFKAM-MHGNNNSVEVD 630
           R+ R      D       P    ++L         P     L + + M +          
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG------ 115

Query: 631 YMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690
                            +  +   +++      T+ L+ N  +  +P  +  LN L+ L+
Sbjct: 116 -----------------LMELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 691 NISHNNLT--------GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY 742
             +   LT         D     + L  ++SL L    +   +P  + +L+ L  L +  
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 743 NQFE 746
           +   
Sbjct: 216 SPLS 219

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.7 bits (249), Expect = 8e-23
 Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 29/269 (10%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-SL 402
              +N +S  +    ++ L++L  L L +N++S       F+ L+ L+ L++S N L  +
Sbjct: 60  DLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 403 STKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRI-HGRISSWMWDLG 460
              L       +L  L +    I + P  +   L  +    +  N + +       +D  
Sbjct: 118 PPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG- 171

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
              L YL +S   LT I    P  + +L+ D N    +             +  +    L
Sbjct: 172 -LKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL-----------EDLLRYSKL 219

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW- 579
             L L  N++      SL     L  L + NN++    P  L  L  LQV+ L +N    
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITK 278

Query: 580 ---GPIGDNTTIVPFPRFRIIDLSHNEFT 605
                       V    +  I L +N   
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 53/248 (21%), Positives = 76/248 (30%), Gaps = 45/248 (18%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
           + T L+L  N +            HL  L + NN+I+         L +LQ L +  N  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 579 WGPIGDNTTIVP--FPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGN---NNSVEV 629
                    I P        + +  N     +P G     + M    M GN   N+  E 
Sbjct: 115 -------VEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 630 DYMTPLN------SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683
                L       S          + GI   +   L     + L  NK Q  I       
Sbjct: 167 GAFDGLKLNYLRISEAK-------LTGIPKDLPETLN---ELHLDHNKIQ-AIEL----- 210

Query: 684 NLLKGLNN-----ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 738
             L   +      + HN +       L  L  +  L L +N L   +P  L  LK L V+
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 739 NLSYNQFE 746
            L  N   
Sbjct: 270 YLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 50/309 (16%), Positives = 103/309 (33%), Gaps = 62/309 (20%)

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK-FVNSCNLTNLN 524
            LDL NN ++ +       +  L          L +  N  + KI +K F     L  L 
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHL--------YALVLVNNKIS-KIHEKAFSPLRKLQKLY 108

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF-WGPIG 583
           ++ N L   +P +L     L  L + +N+I          L  +  + +  N        
Sbjct: 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 584 DNTTIVPF--PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN--SVEVDYMTPLNSSN 639
                  F   +   + +S  + TG+ P    +    +   +N   ++E++ +   +   
Sbjct: 166 PGA----FDGLKLNYLRISEAKLTGI-PKDLPETLNELHLDHNKIQAIELEDLLRYSK-- 218

Query: 640 YYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTG 699
                              L     + L  N+ +      +  L  L+ L+ + +N L+ 
Sbjct: 219 -------------------LY---RLGLGHNQIRMIENGSLSFLPTLRELH-LDNNKLS- 254

Query: 700 DIPSLLRNLTEVESLDLSSNMLVGHIP-------TQLTSLKYLSVLNLSYNQFE-GPIPQ 751
            +P+ L +L  ++ + L +N +   +               Y + ++L  N      +  
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 752 GSQFNTFRN 760
                TFR 
Sbjct: 314 A----TFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 57/290 (19%), Positives = 101/290 (34%), Gaps = 41/290 (14%)

Query: 412 FPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
            P+   L L   +ISE   D  + L  L    L  N+I  +I    +   +  L  L +S
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFS-PLRKLQKLYIS 110

Query: 471 NNFLTNIEYFPPTNMTQLNFDSN------------LTH-KVLDMRMNNF-NGKISQKFVN 516
            N L  I    P+++ +L    N            L +   ++M  N   N        +
Sbjct: 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
              L  L ++  +L G           L  L + +N+I       L    +L  L L  N
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227

Query: 577 RFWGPIG--DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNN--SVEV 629
           +    I   +N ++   P  R + L +N+ +  +P G L + K +       NN   V V
Sbjct: 228 Q----IRMIENGSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGV 281

Query: 630 DYMTPLNSSNYYESI-ILTIKGIDIQIERI-------LTIFMTIDLSSNK 671
           +   P+           +++    +    +       +T  + I   + K
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 36/160 (22%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S  +L+  IP  +   E L  L L  N++    EL D  +   L  L + +N++    
Sbjct: 178 RISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI---R 230

Query: 405 KLKVNS--SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH----GRISSWMWD 458
            ++  S    P L  L L    +S  P  L  L  LQ   L  N I            + 
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 459 LGITALYYLDLSNNFLTNIEYFPPT-----NMTQLNFDSN 493
           +       + L NN +   E  P T     +   + F + 
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 50/264 (18%), Positives = 92/264 (34%), Gaps = 36/264 (13%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           + + L  ++ S      N+  L L  N LS      D A    L+ L +S+N L    + 
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVL---YET 73

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
               S   L  L L+   + E          ++  + + N I  R+S             
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNIS-RVSCSRG----QGKKN 124

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC-NLTNLNL 525
           + L+NN +T +        +++        + LD+++N  +     +   S   L +LNL
Sbjct: 125 IYLANNKITMLRDLDEGCRSRV--------QYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 526 NGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN 585
             N +   +    V    L+ LD+ +N++        +    +  + LR+N+        
Sbjct: 177 QYNFIYD-VK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL------- 226

Query: 586 TTI----VPFPRFRIIDLSHNEFT 605
             I             DL  N F 
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 53/312 (16%), Positives = 95/312 (30%), Gaps = 56/312 (17%)

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
                  ++++ L         +   +        K LD+  N  +   +        L 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNV--------KELDLSGNPLSQISAADLAPFTKLE 61

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
            LNL+ N L   L L   +   L  LD+ NN + +     L + P ++ L   +N     
Sbjct: 62  LLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI--- 111

Query: 582 IGDNTTIVPFPRF---RIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEVDYMTPL 635
                + V   R    + I L++N+ T  L          + +     N    V++    
Sbjct: 112 -----SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN 695
            S                           ++L  N     +   V     LK L+ +S N
Sbjct: 166 AS---------------------SDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLD-LSSN 201

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQF 755
            L   +    ++   V  + L +N LV  I   L   + L   +L  N F     +    
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 756 NTFRNDSYVGNS 767
              R  +    +
Sbjct: 260 KNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 46/256 (17%), Positives = 96/256 (37%), Gaps = 38/256 (14%)

Query: 493 NLTH-KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGN 551
           N    K+  +  ++    ++    ++ N+  L+L+GN L       L     LE+L++ +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 552 NQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTG 611
           N + +     LE L  L+ L L +N           ++  P    +  ++N  +  +   
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNIS-RVSCS 117

Query: 612 YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK 671
                K +   NN                       I  +    E   +    +DL  N+
Sbjct: 118 RGQGKKNIYLANNK----------------------ITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 672 FQG-GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLT 730
                  E+    + L+ L N+ +N +  D+   +    ++++LDLSSN L   +  +  
Sbjct: 156 IDTVNFAELAASSDTLEHL-NLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 731 SLKYLSVLNLSYNQFE 746
           S   ++ ++L  N+  
Sbjct: 212 SAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.8 bits (187), Expect = 7e-15
 Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 20/210 (9%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           + ++N+++            +  L L  N +         A    L+ L +  N +    
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---Y 182

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            +K    F  L  L LS+  ++      ++   + W +L  N++   I   +       L
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS--QNL 239

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            + DL  N             ++      +              K++ +    C +  L 
Sbjct: 240 EHFDLRGNGFHCGT--LRDFFSKNQRVQTVA--------KQTVKKLTGQNEEECTVPTLG 289

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQI 554
             G      LP          ++ +G++  
Sbjct: 290 HYGAYCCEDLPAP----FADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY 734
            I E+    N  K    ++ ++L   + SL ++   V+ LDLS N L       L     
Sbjct: 1   AIHEIKQNGNRYKIEK-VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 735 LSVLNLSYNQFEGPIP 750
           L +LNLS N     + 
Sbjct: 60  LELLNLSSNVLYETLD 75

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 69/369 (18%), Positives = 120/369 (32%), Gaps = 81/369 (21%)

Query: 396 SNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSW 455
           S  R ++  K++   +      L +    ++  PD L     +    +  N +   + + 
Sbjct: 24  SRGRAAVVQKMRACLN-NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLT-SLPA- 78

Query: 456 MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515
                   L  L++S N LT++    P     L     L+       + +     S    
Sbjct: 79  ----LPPELRTLEVSGNQLTSL----PVLPPGL---LELSI--FSNPLTHLPALPS---- 121

Query: 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575
               L  L + GN+L   LP+       L+ L V +NQ+  + P       EL  L   +
Sbjct: 122 ---GLCKLWIFGNQLTS-LPVLPPG---LQELSVSDNQLA-SLPALP---SELCKLWAYN 170

Query: 576 NRFWGPIGDNTTIVP--FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT 633
           N+         T +P      + + +S N+    LPT                     + 
Sbjct: 171 NQL--------TSLPMLPSGLQELSVSDNQLA-SLPT-----------------LPSELY 204

Query: 634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
            L + N        +  +       L     + +S N+    +P +  +L  L     +S
Sbjct: 205 KLWAYN------NRLTSLPALPSG-LK---ELIVSGNRLTS-LPVLPSELKEL----MVS 249

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
            N LT  +P L   L    SL +  N L   +P  L  L   + +NL  N       Q  
Sbjct: 250 GNRLT-SLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304

Query: 754 QFNTFRNDS 762
           +  T     
Sbjct: 305 REITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 6e-21
 Identities = 55/245 (22%), Positives = 89/245 (36%), Gaps = 46/245 (18%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S NQL+ S+P     L  L +   P   L              L  L++  N+L+   
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT--- 134

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
              +    P L  L +S   ++  P +   L +L       N++   +         + L
Sbjct: 135 --SLPVLPPGLQELSVSDNQLASLPALPSELCKL---WAYNNQLT-SLPM-----LPSGL 183

Query: 465 YYLDLSNNFLTNIEYFP--PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKISQK 513
             L +S+N L ++   P  P+ + +L   +N LT         K L +  N    +++  
Sbjct: 184 QELSVSDNQLASL---PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN----RLTSL 236

Query: 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573
            V    L  L ++GNRL   LP+       L  L V  NQ+    P  L  L     + L
Sbjct: 237 PVLPSELKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLTR-LPESLIHLSSETTVNL 291

Query: 574 RSNRF 578
             N  
Sbjct: 292 EGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 1e-20
 Identities = 69/394 (17%), Positives = 126/394 (31%), Gaps = 107/394 (27%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
                +L +  + L   T L D     ++  L + +N L+      + +  P L  L +S
Sbjct: 39  NNGNAVLNVGESGL---TTLPD-CLPAHITTLVIPDNNLT-----SLPALPPELRTLEVS 89

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              ++  P +   L +L  F+     +    S          L  L +  N LT++    
Sbjct: 90  GNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLTSL---- 136

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
           P     L        + L +  N    +++        L  L    N+L   LP+     
Sbjct: 137 PVLPPGL--------QELSVSDN----QLASLPALPSELCKLWAYNNQLTS-LPMLPSG- 182

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFP-RFRIIDLS 600
             L+ L V +NQ+    P    +  EL  L   +NR        T++   P   + + +S
Sbjct: 183 --LQELSVSDNQLAS-LP---TLPSELYKLWAYNNRL-------TSLPALPSGLKELIVS 229

Query: 601 HNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILT 660
            N  T  LP                       + L                         
Sbjct: 230 GNRLTS-LPVL--------------------PSELKE----------------------- 245

Query: 661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNM 720
               + +S N+    +P +   L  L    ++  N LT  +P  L +L+   +++L  N 
Sbjct: 246 ----LMVSGNRLT-SLPMLPSGLLSL----SVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 721 L---VGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
           L         ++TS    S   + ++      P+
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 52/279 (18%), Positives = 89/279 (31%), Gaps = 66/279 (23%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL-YDFAKLKNLKWLFVSNNRLSLS 403
               N L+ S+P+       L  L +  N+L   T L      L  L         L   
Sbjct: 67  VIPDNNLT-SLPA---LPPELRTLEVSGNQL---TSLPVLPPGLLELSIFSNPLTHLP-- 117

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
                 +    L  L +    ++  P +   L +L   ++S N++             + 
Sbjct: 118 ------ALPSGLCKLWIFGNQLTSLPVLPPGLQEL---SVSDNQLA------SLPALPSE 162

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTH-KVLDMRMNNFNGKIS 511
           L  L   NN LT++    P+ + +L+   N           L      + R+ +     S
Sbjct: 163 LCKLWAYNNQLTSLPML-PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPS 221

Query: 512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVL 571
                   L  L ++GNRL   LP+       L+ L V  N++    P        L  L
Sbjct: 222 -------GLKELIVSGNRLTS-LPVLPSE---LKELMVSGNRLTS-LPML---PSGLLSL 266

Query: 572 ILRSNRFWGPIGDNTTIVP-----FPRFRIIDLSHNEFT 605
            +  N+         T +P           ++L  N  +
Sbjct: 267 SVYRNQL--------TRLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 16/148 (10%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
            +N+L+ S+P+       L  L +  NRL+    L        LK L VS NRL+     
Sbjct: 209 YNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLT----- 254

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
            +      L  L +    ++  P+ L  L      NL  N +  R    + ++  T+   
Sbjct: 255 SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI--TSAPG 312

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNL 494
                          P     L+  +  
Sbjct: 313 YSGPIIRFDMAGASAPRETRALHLAAAD 340

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 4e-20
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 40/282 (14%)

Query: 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGL 420
            L N I +    + +   T+    A L  +  L      +   T ++      NL GL L
Sbjct: 17  ALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLEL 70

Query: 421 SACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYF 480
               I++    L+ L ++    LS N +   +S+     G+ ++  LDL++  +T++   
Sbjct: 71  KDNQITDLAP-LKNLTKITELELSGNPLK-NVSA---IAGLQSIKTLDLTSTQITDVTPL 125

Query: 481 P-PTNMTQLNFDSNLTHKVLDMRMNNFNGKIS--QKFVNSCNLTNLNLNGNRLEGPLPLS 537
              +N+  L  D N               +I+         NL  L++   ++    PL+
Sbjct: 126 AGLSNLQVLYLDLN---------------QITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRII 597
             N   L  L   +N+I+D  P  L  LP L  + L++N+    I D + +       I+
Sbjct: 171 --NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIV 222

Query: 598 DLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSN 639
            L++   T   P  Y +N          S     + P   S+
Sbjct: 223 TLTNQTITN-QPVFYNNNLVVPNVVKGPSGA--PIAPATISD 261

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 45/244 (18%), Positives = 89/244 (36%), Gaps = 29/244 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
               + ++     +  +L+ +  L      +   T +     L NL  L + +N++   T
Sbjct: 25  AAGKSNVTD--TVTQADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELKDNQI---T 76

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            L    +   +  L LS   +      +  L  ++  +L+  +I    +      G++ L
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQI----TDVTPLAGLSNL 131

Query: 465 YYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKISQ 512
             L L  N +TNI      TN+  L+  +           L+    L    N  +  IS 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-DIS- 189

Query: 513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI 572
              +  NL  ++L  N++    PL+  N  +L ++ + N  I +    +   L    V+ 
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

Query: 573 LRSN 576
             S 
Sbjct: 248 GPSG 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 23/193 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             +S Q++   P +   L NL +L L  N++   T +   A L NL++L + N ++   +
Sbjct: 113 DLTSTQITDVTPLA--GLSNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNAQV---S 164

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            L   ++   L  L      IS+    L +L  L   +L  N+I    S        + L
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI----SDVSPLANTSNL 219

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
           + + L+N  +TN   F   N+   N     +   +     + NG             + N
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNG----------TYASPN 269

Query: 525 LNGNRLEGPLPLS 537
           L  N       +S
Sbjct: 270 LTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 75/313 (23%)

Query: 432 LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD 491
              L         K+ +   ++       +  +  L      +T IE      +  L   
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIEGV--QYLNNL--- 65

Query: 492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGN 551
                  L+++ N     ++    N   +T L L+GN L+    ++      ++ LD+ +
Sbjct: 66  -----IGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIA--GLQSIKTLDLTS 116

Query: 552 NQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTG 611
            QI D  P  L  L  LQVL L  N+    I + + +      + + + + + + + P  
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNAQVSDLTPLA 170

Query: 612 YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK 671
            L                                                  T+    NK
Sbjct: 171 NLSKLT----------------------------------------------TLKADDNK 184

Query: 672 FQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS 731
               I  +   L  L  ++ + +N ++ D+  L  N + +  + L++  +         +
Sbjct: 185 ISD-ISPL-ASLPNLIEVH-LKNNQIS-DVSPL-ANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 732 LKYLSVLNLSYNQ 744
           L   +V+      
Sbjct: 240 LVVPNVVKGPSGA 252

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 92.9 bits (231), Expect = 6e-20
 Identities = 64/267 (23%), Positives = 99/267 (37%), Gaps = 39/267 (14%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELY--DFAKLKNLKWLFVSNNRLSLST 404
               L   +P  +    N  LL L  N++     +    F  L++L+ L +S N +    
Sbjct: 51  VRKNLR-EVPDGI--STNTRLLNLHENQI---QIIKVNSFKHLRHLEILQLSRNHIR--- 101

Query: 405 KLKVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
            +++   +   NL  L L    ++  P      L +L+   L  N I   I S+ ++  I
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN-RI 159

Query: 462 TALYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
            +L  LDL     L+ I          L   SNL +  L++ M N   +I         L
Sbjct: 160 PSLRRLDLGELKRLSYI---SEGAFEGL---SNLRY--LNLAMCNLR-EI-PNLTPLIKL 209

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
             L+L+GN L    P S     HL+ L +  +QI     N  + L  L  + L  N    
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-- 267

Query: 581 PIGDNTTI-----VPFPRFRIIDLSHN 602
                T +      P      I L HN
Sbjct: 268 -----TLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 49/285 (17%), Positives = 93/285 (32%), Gaps = 51/285 (17%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           +      L  +   P          +N    +L++  N         F +  +L  L L+
Sbjct: 48  VICVRKNLREV---PD------GISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
            N +      +     +L  L++ +N++          L +L+ L LR+N          
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-------E 149

Query: 587 TIVPF-----PRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEVDYMTPLNSS 638
           +I  +     P  R +DL   +    +  G  +    + +      N  E+  +TPL   
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK- 208

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
                               L     +DLS N      P     L  L+ L  +  + + 
Sbjct: 209 --------------------LD---ELDLSGNHLSAIRPGSFQGLMHLQKLW-MIQSQIQ 244

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
               +   NL  +  ++L+ N L        T L +L  ++L +N
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 20/188 (10%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS-NNRLSL 402
               N+L+ +IP+     L  L  L L +N +  +   Y F ++ +L+ L +    RL  
Sbjct: 118 ELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL-- 173

Query: 403 STKLKVNS--SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
            + +   +     NL  L L+ CN+ E P+ L  L +L   +LS N +          L 
Sbjct: 174 -SYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGL- 230

Query: 461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
              L  L +  + +  IE     N+  L          +++  NN        F    +L
Sbjct: 231 -MHLQKLWMIQSQIQVIERNAFDNLQSL--------VEINLAHNNLTLLPHDLFTPLHHL 281

Query: 521 TNLNLNGN 528
             ++L+ N
Sbjct: 282 ERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 42/237 (17%)

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
           S N   LNL+ N+++     S  +  HLE+L +  N I          L  L  L L  N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 577 RFWGPIGDNTTI-----VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVE 628
           R        TTI     V   + + + L +N     +P+   +   ++     G      
Sbjct: 123 RL-------TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR-- 172

Query: 629 VDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 688
                              +  I       L+    ++L+    +  IP +   L  L  
Sbjct: 173 -------------------LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDE 211

Query: 689 LNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQ 744
           L ++S N+L+   P   + L  ++ L +  + +   I      +L+ L  +NL++N 
Sbjct: 212 L-DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 9e-20
 Identities = 71/421 (16%), Positives = 126/421 (29%), Gaps = 44/421 (10%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N+L   I        NL  L L  N         +F  +  LK+L +S   L  S+
Sbjct: 75  DLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            L +     +   L L      +       L      +L       +   ++ D+ +  +
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 465 YYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS---QKFVNSCNL 520
             L+LSN   +                 +N     L +              + V    +
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 521 TNLNLNGNRLEGP-----LPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575
              +++  +L+G         S  +   L +  V ++          EI   + +     
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL 635
           +     +           F  +D S+N  T         +                +  L
Sbjct: 310 SGT--RMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLT-------------ELETL 353

Query: 636 N-SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNNIS 693
               N  + +    +         +     +D+S N       +        L  LN +S
Sbjct: 354 ILQMNQLKELSKIAEMTTQ-----MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN-MS 407

Query: 694 HNNLTGDIP-SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG 752
            N LT  I   L   +     LDL SN +   IP Q+  L+ L  LN++ NQ +  +P G
Sbjct: 408 SNILTDTIFRCLPPRIKV---LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG 462

Query: 753 S 753
            
Sbjct: 463 I 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 4e-15
 Identities = 56/400 (14%), Positives = 110/400 (27%), Gaps = 46/400 (11%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S N L   +P  +   +   +L +  N +S      D   L  L+ L +S+NR+     +
Sbjct: 8   SKNGLI-HVPKDL--SQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDI 62

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
            V      L  L LS   + +          L+  +LS N     +        ++ L +
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKF 119

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           L LS   L      P  ++        L                 +      +    +L+
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVL----------GETYGEKEDPEGLQDFNTESLH 169

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
                      +++     V ++  + I     +         +  L++N          
Sbjct: 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL------- 222

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIIL 646
                     I+ + N F  +L   +          N            + S        
Sbjct: 223 ---SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG------- 272

Query: 647 TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
                       L       + S+ F      +    + +  + N + +           
Sbjct: 273 ----------TSLKALSIHQVVSDVFGFPQSYIYEIFSNMN-IKNFTVSGTRMVHMLCPS 321

Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
            ++    LD S+N+L   +      L  L  L L  NQ +
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 73/517 (14%), Positives = 162/517 (31%), Gaps = 69/517 (13%)

Query: 80  IPSNSSLFFLPHIRKLNLAFNDFNYSEISSG-FSQLRSLTLLNLSSSNFMGSIPASI--D 136
           +P + S         LN++ N    SE+ +     L  L +L + S N +  +  S+   
Sbjct: 15  VPKDLS----QKTTILNISQN--YISELWTSDILSLSKLRILII-SHNRIQYLDISVFKF 67

Query: 137 LINVSRL--STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEE 194
              +  L  S N L   +      L      L       +     D   + ++   + + 
Sbjct: 68  NQELEYLDLSHNKLVKISCHPTVNL----KHLD------LSFNAFDALPICKEFGNMSQL 117

Query: 195 SFIYL----LLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICR----- 245
            F+ L    L     + IA  +  ++  +  +   E E  +  +      + I       
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 246 -NRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKST 304
            +     ++      E  +      +             + +              W S 
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 305 LQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELEN 364
           ++   ++  T   Y +I+                                   S   L+ 
Sbjct: 238 IRILQLVWHTTVWYFSIS--------------------NVKLQGQLDFRDFDYSGTSLKA 277

Query: 365 LILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACN 424
           L + ++ S+        Y +    N+     + +   +   +   S       L  S   
Sbjct: 278 LSIHQVVSDVFGFPQS-YIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNL 335

Query: 425 ISEFP-DILRTLHQLQWFNLSKNRIH--GRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
           +++   +    L +L+   L  N++    +I+     +   +L  LD+S N ++  E   
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM--KSLQQLDISQNSVSYDE--- 390

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
                + +     +   L+M  N     I +       +  L+L+ N+++  +P  +V  
Sbjct: 391 ----KKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQVVKL 443

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
             L+ L+V +NQ+        + L  LQ + L +N +
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 8e-09
 Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 54/317 (17%)

Query: 462 TALYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN------------LTH-KVLDMRMNN 505
                L++S N+++ +        + +  L    N                + LD+  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 506 FNGKISQKFVNSCNLTNLNLNGNRLEG-PLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI 564
                    VN   L +L+L+ N  +  P+     N   L+ L +    +  +    +  
Sbjct: 81  LVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 565 LPELQVLILRSNRFWGPI-GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN 623
           L   +VL++    +      +           I+  ++ EF  +L          +    
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD---------VSVKT 188

Query: 624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683
             ++E+  +  +   N     +  +  +    +        I+ + N F           
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF----------- 237

Query: 684 NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
             ++ L  + H  +             + ++ L   +         TSLK LS+  +  +
Sbjct: 238 --IRILQLVWHTTVW---------YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286

Query: 744 QFEGPIPQGSQFNTFRN 760
            F    PQ   +  F N
Sbjct: 287 VFG--FPQSYIYEIFSN 301

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 35/165 (21%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYD-FAKLKNLKWLFVSNNRLSLS 403
            FS+N L+ ++  +   L  L  L L  N+L   +++ +   ++K+L+ L +S N +S  
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
            K    S   +L  L +S+  +++     L    +++  +L  N+I   I   +  L   
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKL--E 444

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN 507
           AL  L++++N L ++       +T L        + + +  N ++
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSL--------QKIWLHTNPWD 481

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 9e-20
 Identities = 72/420 (17%), Positives = 133/420 (31%), Gaps = 48/420 (11%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S N+L  +I      + +L  L L  N         +F  L  L +L +S  +      L
Sbjct: 108 SHNRLQ-NISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
            V     +   L L + +I         +      +L  +     + S   ++ + AL +
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN--SLFSVQVNMSVNALGH 222

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ--KFVNSCNLTNLN 524
           L LSN  L +                     V    +        +  +F     +  LN
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 525 LNGNRLEGPLPLSLVNCHH-----LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW 579
           +    +   +              L +  V N     +      +  E+ + +L  +   
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-- 340

Query: 580 GPIGDNTTIVPF--PRFRIIDLSHNEFTGVLPTGY--LDNFKAMMHGNNNSVEVDYMTPL 635
                   + P     F  ++ + N FT  +  G   L   + ++   N           
Sbjct: 341 --TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG---------- 388

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV-VGKLNLLKGLNNISH 694
                     L        + + ++   T+D+S N       +        +  L N+S 
Sbjct: 389 ----------LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL-NLSS 437

Query: 695 NNLTGDI-PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS 753
           N LTG +   L   +     LDL +N +   IP  +T L+ L  LN++ NQ +  +P G 
Sbjct: 438 NMLTGSVFRCLPPKVKV---LDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS-VPDGV 492

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 42/413 (10%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYD--FAKLKNLKWLFVSNNRL- 400
             S N +S  +       L  L +LRL  NR+     L    F   ++L++L VS+NRL 
Sbjct: 58  SLSQNSIS-ELRMPDISFLSELRVLRLSHNRI---RSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 401 SLSTKLKVNSSFPNLFGLGLSACNISEFPD--ILRTLHQLQWFNLSKNRIHGRISSWMWD 458
           ++S          +L  L LS  +    P       L +L +  LS  +           
Sbjct: 114 NISC-----CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR--------Q 160

Query: 459 LGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC 518
           L +  + +L LS   L  + Y      T+     N T   L    N+         VN+ 
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 519 ---NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575
               L+N+ LN    +  +           +L+V    I   +   +++        +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL 635
                    N TI           S       L +  +++ K  +   +          +
Sbjct: 281 LNI-----YNLTITERIDREEFTYSETA----LKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN 695
           N      S       I +      + F  ++ + N F   + +    L  L+ L  +  N
Sbjct: 332 NIKMLSIS---DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL-ILQRN 387

Query: 696 NLT--GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQF 745
            L     +  + +N++ +E+LD+S N L  H   +  +  + + VLNLS N  
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 75/491 (15%), Positives = 142/491 (28%), Gaps = 95/491 (19%)

Query: 69  LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFM 128
           LD+S + L  NI        +  +R L+L+FNDF+   +   F  L  LT L LS++ F 
Sbjct: 105 LDVSHNRLQ-NISCCP----MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 129 GSIPASIDLINVSRLSTNY--LPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAE 186
                 +  +++S +  +     I            TT LH       +   L   +V  
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF----HPNSLFSVQVNM 215

Query: 187 KENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRN 246
             N L       + L+ ++ +       E+ +  T LN   +  +      +   +    
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 247 R--TCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKST 304
           R        ++ +    D          + S  I  +                       
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV----------------KNQVFLF 319

Query: 305 LQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYE-LE 363
            +  +     E                               S +     I         
Sbjct: 320 SKEALYSVFAEMNIK-------------------------MLSISDTP-FIHMVCPPSPS 353

Query: 364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSAC 423
           +   L    N  +  +     + LK L+ L +  N L                       
Sbjct: 354 SFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK---------------------- 390

Query: 424 NISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPT 483
           N  +   + + +  L+  ++S N ++            + +  L+LS+N           
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES-ILVLNLSSN----------- 438

Query: 484 NMTQLNFDSNLTH--KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
            +T   F   L    KVLD+  N     I +   +   L  LN+  N+L+          
Sbjct: 439 MLTGSVFRC-LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496

Query: 542 HHLEVLDVGNN 552
             L+ + + +N
Sbjct: 497 TSLQYIWLHDN 507

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 2e-19
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 29/247 (11%)

Query: 342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS 401
            E    S  +    P         I   L    +   T+     +L ++  +  +N+ + 
Sbjct: 2   GETITVSTPIKQIFPDDA--FAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDI- 55

Query: 402 LSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
               ++     PN+  L L+   +++    L  L  L W  L +N+I   +SS + DL  
Sbjct: 56  --KSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDL-- 108

Query: 462 TALYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGK 509
             L  L L +N +++I        +  L   +N          LT    L +  N  +  
Sbjct: 109 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-D 167

Query: 510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ 569
           I         L NL L+ N +     L+     +L+VL++ + +  +   N    L    
Sbjct: 168 IVP-LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 570 VLILRSN 576
            +     
Sbjct: 225 TVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 2e-12
 Identities = 54/319 (16%), Positives = 102/319 (31%), Gaps = 78/319 (24%)

Query: 451 RISSWMWDLGITALYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGK 509
            I     D         +L    +T+        ++ Q+  +++                
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS---------------D 54

Query: 510 ISQ-KFVNSC-NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPE 567
           I   + +    N+T L LNGN+L    PL+  N  +L  L +  N+I D     L+ L +
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLSS--LKDLKK 110

Query: 568 LQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV 627
           L+ L L  N     I D   +V  P+   + L +N+ T +     L              
Sbjct: 111 LKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD---------- 156

Query: 628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 687
                                               T+ L  N+    I  +   L  L+
Sbjct: 157 ------------------------------------TLSLEDNQISD-IVPL-AGLTKLQ 178

Query: 688 GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 747
            L  +S N+++ D+ +L   L  ++ L+L S   +       ++L   + +  +      
Sbjct: 179 NLY-LSKNHIS-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 748 PIPQGSQFNTFRNDSYVGN 766
           P    S    +   +   +
Sbjct: 236 PEII-SDDGDYEKPNVKWH 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 2e-19
 Identities = 51/255 (20%), Positives = 82/255 (32%), Gaps = 53/255 (20%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-----S 401
             N +SG+        +      LP    +    L     +     L ++   L     +
Sbjct: 18  FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDN 77

Query: 402 LSTKLKV-----N--SSFPNLFG----LGLSACNISEFPDILRTLHQLQWFNLSKNRIHG 450
           L  ++ V     N   S P L      L      +S  P++  +L  L   ++  N++  
Sbjct: 78  LPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL---DVDNNQLT- 133

Query: 451 RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-- 508
            +           L Y++  NN LT +    P   T L        +VL +R N      
Sbjct: 134 MLPE-----LPALLEYINADNNQLTML----PELPTSL--------EVLSVRNNQLTFLP 176

Query: 509 -KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLE----VLDVGNNQINDNFPNWLE 563
                      +L  L+++ N LE  LP   V  HH E          N+I    P  + 
Sbjct: 177 ELPE-------SLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENIL 227

Query: 564 ILPELQVLILRSNRF 578
            L     +IL  N  
Sbjct: 228 SLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.6 bits (183), Expect = 6e-14
 Identities = 59/373 (15%), Positives = 111/373 (29%), Gaps = 102/373 (27%)

Query: 396 SNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSW 455
            NN  SLS     N+     +         +++        +      ++N     +   
Sbjct: 7   INNNFSLSQNSFYNTI-SGTY---------ADYFSAWDKWEKQALPGENRNEAVSLLK-- 54

Query: 456 MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKISQKF 514
             +  I     L L+   L+++    P  +T L    N L               + +  
Sbjct: 55  --ECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALIS-------------LPELP 99

Query: 515 VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574
               +L  L+   NRL   LP    +  HL   DV NNQ+    P   E+   L+ +   
Sbjct: 100 ---ASLEYLDACDNRLST-LPELPASLKHL---DVDNNQLT-MLP---ELPALLEYINAD 148

Query: 575 SNRFWGPIGDNTTIVP--FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
           +N+         T++P       ++ + +N+ T  LP                    +  
Sbjct: 149 NNQL--------TMLPELPTSLEVLSVRNNQLT-FLP--------------------ELP 179

Query: 633 TPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN-- 690
             L                             +D+S+N  +  +P V  + +  +     
Sbjct: 180 ESLE---------------------------ALDVSTNLLES-LPAVPVRNHHSEETEIF 211

Query: 691 -NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 749
                N +T  IP  + +L    ++ L  N L   I   L+        +     F    
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 750 PQGSQFNTFRNDS 762
            Q +  +    D+
Sbjct: 271 GQQNTLHRPLADA 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 57/267 (21%), Positives = 95/267 (35%), Gaps = 39/267 (14%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELY--DFAKLKNLKWLFVSNNRLSLST 404
           +   LS  +P  +    N   L L  N +     +    F  L +L+ L +  N +    
Sbjct: 62  TRRGLS-EVPQGI--PSNTRYLNLMENNI---QMIQADTFRHLHHLEVLQLGRNSIR--- 112

Query: 405 KLKVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
           +++V   +   +L  L L    ++  P      L +L+   L  N I   I S+ ++  +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN-RV 170

Query: 462 TALYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNL 520
            +L  LDL     L  I          L    NL +  L++ M N    +         L
Sbjct: 171 PSLMRLDLGELKKLEYI---SEGAFEGL---FNLKY--LNLGMCNIK-DM-PNLTPLVGL 220

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
             L ++GN      P S      L+ L V N+Q++    N  + L  L  L L  N    
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-- 278

Query: 581 PIGDNTTI-----VPFPRFRIIDLSHN 602
                +++      P      + L HN
Sbjct: 279 -----SSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 53/290 (18%), Positives = 99/290 (34%), Gaps = 51/290 (17%)

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523
              +  +   L+ +   P          SN  +  L++  NN     +  F +  +L  L
Sbjct: 56  FSKVVCTRRGLSEV---PQ------GIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVL 104

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
            L  N +      +      L  L++ +N +        E L +L+ L LR+N       
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----- 159

Query: 584 DNTTI-----VPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEVDYMTPL 635
              +I        P    +DL   +    +  G  +    + +   G  N  ++  +TPL
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN 695
                     L                  +++S N F    P     L+ LK L  + ++
Sbjct: 218 VG--------LE----------------ELEMSGNHFPEIRPGSFHGLSSLKKL-WVMNS 252

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
            ++    +    L  +  L+L+ N L        T L+YL  L+L +N +
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.8 bits (184), Expect = 4e-14
 Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 33/236 (13%)

Query: 412 FPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
             N   L L   NI     D  R LH L+   L +N I  +I    ++ G+ +L  L+L 
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFN-GLASLNTLELF 131

Query: 471 NNFLTNIEY---FPPTNMTQLNFDSN------------LTH-KVLDMRMNNFNGKISQK- 513
           +N+LT I        + + +L   +N            +     LD+        IS+  
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL 573
           F    NL  LNL    ++  +P +L     LE L++  N   +  P     L  L+ L +
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 574 RSNRFWGPIG--DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGN 623
            +++    +   +            ++L+HN  +  LP       + +    +H N
Sbjct: 250 MNSQ----VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 42/242 (17%), Positives = 67/242 (27%), Gaps = 66/242 (27%)

Query: 519 NLTNLNLNGNRLEG-PLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNR 577
             + +      L   P  +      +   L++  N I     +    L  L+VL L  N 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 578 FWGPIGDNTTIVP--F---PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYM 632
                     I    F        ++L  N  T V+P+G  +                  
Sbjct: 111 I-------RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSK-------------- 148

Query: 633 TPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNN 691
                                     L     + L +N  +  IP     ++  L  L+ 
Sbjct: 149 --------------------------LR---ELWLRNNPIES-IPSYAFNRVPSLMRLDL 178

Query: 692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ 751
                L          L  ++ L+L    +   +P  LT L  L  L +S N F   I  
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPE-IRP 235

Query: 752 GS 753
           GS
Sbjct: 236 GS 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 55/273 (20%), Positives = 100/273 (36%), Gaps = 32/273 (11%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
               I   L    +   T+     +L ++  +  +N+ +     ++     PN+  L L+
Sbjct: 23  FAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLN 76

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              +++    L  L  L W  L +N++   +SS      +  L  L L +N +++I    
Sbjct: 77  GNKLTDIKP-LANLKNLGWLFLDENKVK-DLSS---LKDLKKLKSLSLEHNGISDINGL- 130

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKIS--QKFVNSCNLTNLNLNGNRLEGPLPLSLV 539
             ++ QL        + L +  N    KI+          L  L+L  N++   +PL+  
Sbjct: 131 -VHLPQL--------ESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIVPLA-- 175

Query: 540 NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF-WGPIGDNTTIVPFPRFRIID 598
               L+ L +  N I+D     L  L  L VL L S      PI   + +V     +  D
Sbjct: 176 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 599 LSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631
            S      +   G  +      H    + EV +
Sbjct: 234 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 266

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 29/231 (12%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
               ++ ++  +  EL ++  +   ++ +     +     L N+  LF++ N+L   T +
Sbjct: 32  KKKSVTDAVTQN--ELNSIDQIIANNSDI---KSVQGIQYLPNVTKLFLNGNKL---TDI 83

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL-GITALY 465
           K  ++  NL  L L    + +    L+ L +L+  +L  N I   I+     L  +  L 
Sbjct: 84  KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGIS-DING----LVHLPQLE 137

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNL 525
            L L NN +T+I     + +T+L          L +  N  +  I         L NL L
Sbjct: 138 SLYLGNNKITDIT--VLSRLTKL--------DTLSLEDNQIS-DIVP-LAGLTKLQNLYL 185

Query: 526 NGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
           + N +     L+     +L+VL++ + +  +   N    L     +     
Sbjct: 186 SKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 29/269 (10%)

Query: 379 TELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQL 438
            +++            +    +   T     +   ++  +  +  +I      ++ L  +
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNV 70

Query: 439 QWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV 498
               L+ N++   I        +  L +L L  N + ++      ++ +L        K 
Sbjct: 71  TKLFLNGNKLT-DIKP---LANLKNLGWLFLDENKVKDLS--SLKDLKKL--------KS 116

Query: 499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNF 558
           L +  N  +  I+   V+   L +L L  N++     LS      L+ L + +NQI+D  
Sbjct: 117 LSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIV 172

Query: 559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA 618
           P  L  L +LQ L L  N     I D   +       +++L   E     P  +  N   
Sbjct: 173 P--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLN-KPINHQSNLVV 225

Query: 619 MMHGNNNSVEVDYMTPLNSSNYYESIILT 647
                N    +     ++    YE   + 
Sbjct: 226 PNTVKNTDGSLVTPEIISDDGDYEKPNVK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 26/211 (12%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
               N++   + SS+ +L+ L  L L  N +   +++     L  L+ L++ NN++   T
Sbjct: 96  FLDENKVK-DL-SSLKDLKKLKSLSLEHNGI---SDINGLVHLPQLESLYLGNNKI---T 147

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            + V S    L  L L    IS+    L  L +LQ   LSKN I    S      G+  L
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI----SDLRALAGLKNL 202

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
             L+L +    N      +N+   N   N    ++   + + +G          +    N
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG----------DYEKPN 252

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN 555
           +  +    P   + V+    + + +G  +  
Sbjct: 253 VKWHL---PEFTNEVSFIFYQPVTIGKAKAR 280

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 47/273 (17%), Positives = 103/273 (37%), Gaps = 44/273 (16%)

Query: 479 YFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLS 537
              PT + Q+  D         +++  +    ++Q  +N  ++  +  N + ++    + 
Sbjct: 8   ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQGIQ 65

Query: 538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRII 597
                ++  L +  N++ D  P  L  L  L  L L  N+    + D +++    + + +
Sbjct: 66  --YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSL 117

Query: 598 DLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIER 657
            L HN  + +    +L   +++  GNN                    I  I  +      
Sbjct: 118 SLEHNGISDINGLVHLPQLESLYLGNNK-------------------ITDITVLSR---- 154

Query: 658 ILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLD 715
            LT   T+ L  N+    I ++V    L  L+ L  +S N+++ D+ +L   L  ++ L+
Sbjct: 155 -LTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLY-LSKNHIS-DLRAL-AGLKNLDVLE 206

Query: 716 LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 748
           L S   +       ++L   + +  +      P
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 50/288 (17%), Positives = 92/288 (31%), Gaps = 53/288 (18%)

Query: 458 DLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS 517
           D         +L    +T+        +  +          +    ++    +       
Sbjct: 20  DDAFAETIKDNLKKKSVTDAV--TQNELNSI--------DQIIANNSDIK-SVQG-IQYL 67

Query: 518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNR 577
            N+T L LNGN+L    PL+  N  +L  L +  N++ D     L+ L +L+ L L  N 
Sbjct: 68  PNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG 123

Query: 578 FWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNS 637
               I D   +V  P+   + L +N+ T +     L     +   +N             
Sbjct: 124 ----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ------------ 167

Query: 638 SNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV--VGKLNLLKGLNNISHN 695
                  I  I  +       LT    + LS N     I ++  +  L  L  L  +   
Sbjct: 168 -------ISDIVPLA-----GLTKLQNLYLSKNH----ISDLRALAGLKNLDVL-ELFSQ 210

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
                  +   NL    ++  +   LV   P  ++        N+ ++
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.7 bits (210), Expect = 4e-18
 Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
               L  ++P  +        + L  NR+S       F   +NL  L++ +N L+     
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDA 73

Query: 407 KVNSSFPNLFGLGLSA-CNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
              +    L  L LS    +          L +L   +L +  +   +   ++  G+ AL
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR-GLAAL 131

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            YL L +N L  +      ++  L          L +  N  +    + F    +L  L 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNL--------THLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
           L+ NR+    P +  +   L  L +  N ++      L  L  LQ L L  N
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 30/233 (12%)

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
                 + L+GNR+      S   C +L +L + +N +          L  L+ L L  N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSVEVDYMT 633
                + D  T     R   + L        L  G      A+ +    +N         
Sbjct: 91  AQLRSV-DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-------- 140

Query: 634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS 693
                         ++ +     R L     + L  N+           L+ L  L  + 
Sbjct: 141 --------------LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLH 185

Query: 694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQF 745
            N +    P   R+L  + +L L +N L   +PT+ L  L+ L  L L+ N +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 34/155 (21%), Positives = 49/155 (31%), Gaps = 36/155 (23%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYD--FAKLKNLKWLFVSNNRLS 401
           H     L   +   +   L  L  L L  N L     L D  F  L NL  LF+  NR+S
Sbjct: 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 402 LSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
                                 ++       R LH L    L +NR+   +    +   +
Sbjct: 167 ----------------------SVP--ERAFRGLHSLDRLLLHQNRVA-HVHPHAFR-DL 200

Query: 462 TALYYLDLSNNFLTNIE---YFPPTNMTQLNFDSN 493
             L  L L  N L+ +      P   +  L  + N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 664 TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723
            I L  N+              L  L  +  N L     +    L  +E LDLS N  + 
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILW-LHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 724 HIPTQ-LTSLKYLSVLNLSYNQFEGPIPQGS 753
            +       L  L  L+L     +  +  G 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQE-LGPGL 124

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 50/285 (17%), Positives = 107/285 (37%), Gaps = 28/285 (9%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           SS  L+ SIPS +   E +  L L +NR++      D  +  NL+ L +++N ++ + + 
Sbjct: 39  SSGSLN-SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEE 93

Query: 407 KVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
              SS  +L  L LS   +S       + L  L + NL  N     +        +T L 
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152

Query: 466 YLDLSNNF-LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            L + N    T I+      +T L        + L++  ++      +   +  N+++L 
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFL--------EELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI--------LPELQVLILRSN 576
           L+  +    L + +     +E L++ +  ++    + L              + + +   
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621
             +  +     +        ++ S N+    +P G  D   ++  
Sbjct: 265 SLFQVMK---LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 30/236 (12%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
             S N LS ++ SS ++ L +L  L L  N      E   F+ L  L+ L V N      
Sbjct: 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
            + K  +    L  L + A ++  +    L+++  +    L   +    +     D   +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD-VTS 222

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTN 522
           ++  L+L +  L     F  + ++    +S                      +      N
Sbjct: 223 SVECLELRDTDLDT---FHFSELSTGETNS---------------------LIKKFTFRN 258

Query: 523 LNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
           + +    L   +   L     L  L+   NQ+        + L  LQ + L +N +
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 41/296 (13%)

Query: 468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNG 527
             S+  L +I       +             LD+  N      +       NL  L L  
Sbjct: 37  KGSSGSLNSIPSGLTEAVK-----------SLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 528 NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTT 587
           N +      S  +   LE LD+  N +++   +W + L  L  L L  N  +  +G+ + 
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSL 144

Query: 588 IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAM----MHGNN-NSVEV---DYMTPLN--- 636
                + +I+ + + +    +          +    +  ++  S E      +  ++   
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 637 -SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG----GIPEVV-GKLNLLKGLN 690
                          +      + +    ++L            +       L       
Sbjct: 205 LHMK-------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 691 N--ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYN 743
           N  I+  +L   +  LL  ++ +  L+ S N L   +P      L  L  + L  N
Sbjct: 258 NVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 45/243 (18%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
            + +L+L+ NR+       L  C +L+ L + +N IN    +    L  L+ L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 579 WGPIGDNTTI-----VPFPRFRIIDLSHNEFTGVLPTG---YLDNFKAMMHGNNNSVEVD 630
                  + +      P      ++L  N +  +  T    +L   + +  GN ++    
Sbjct: 113 -------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT---- 161

Query: 631 YMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 690
                               I  +    LT    +++ ++  Q   P+ +  +  +  L 
Sbjct: 162 -----------------FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS--------LKYLSVLNLSY 742
            +        +   +   + VE L+L    L     ++L++              + ++ 
Sbjct: 205 -LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 743 NQF 745
              
Sbjct: 264 ESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 666 DLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHI 725
           DLS+N+        + +   L+ L  ++ N +         +L  +E LDLS N L  ++
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALV-LTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NL 115

Query: 726 PTQL-TSLKYLSVLNLSYNQFEGPIPQGSQFN 756
            +     L  L+ LNL  N ++  + + S F+
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 27/196 (13%), Positives = 68/196 (34%), Gaps = 21/196 (10%)

Query: 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGL 420
             +  +   L  +  +  TE    A++ +L ++ ++N  +   T L       N+  L +
Sbjct: 21  TFKAYLNGLLGQSSTANITE----AQMNSLTYITLANINV---TDLTGIEYAHNIKDLTI 73

Query: 421 SACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYF 480
           +  + + + + +  L  L+   +    +       +  L  T+L  LD+S++   +    
Sbjct: 74  NNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHDDSILT 130

Query: 481 PPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN 540
               + ++          +D+  N     I         L +LN+  + +     +   +
Sbjct: 131 KINTLPKV--------NSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--D 179

Query: 541 CHHLEVLDVGNNQIND 556
              L  L   +  I  
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 32/207 (15%)

Query: 424 NISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNF---LTNIEYF 480
           +    PD   T        L ++     I+    +  + +L Y+ L+N     LT IEY 
Sbjct: 13  DNVNIPD--STFKAYLNGLLGQSST-ANIT----EAQMNSLTYITLANINVTDLTGIEYA 65

Query: 481 PPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS--QKFVNSCNLTNLNLNGNRLEGPLPLSL 538
              N+  L  ++                  +         NL  L + G  +      +L
Sbjct: 66  --HNIKDLTINNI---------------HATNYNPISGLSNLERLRIMGKDVTSDKIPNL 108

Query: 539 VNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID 598
                L +LD+ ++  +D+    +  LP++  + L  N     I D   +   P  + ++
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA---ITDIMPLKTLPELKSLN 165

Query: 599 LSHNEFTGVLPTGYLDNFKAMMHGNNN 625
           +  +                +   +  
Sbjct: 166 IQFDGVHDYRGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 16/138 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             ++   +    + +  L NL  LR+    ++ + ++ + + L +L  L +S++     +
Sbjct: 72  TINNIHATNY--NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHD-DS 127

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL----G 460
            L   ++ P +  + LS          L+TL +L+  N+  + +H        D      
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH--------DYRGIED 179

Query: 461 ITALYYLDLSNNFLTNIE 478
              L  L   +  +   +
Sbjct: 180 FPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 664 TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG 723
            + +            +  L  L  L+ ISH+     I + +  L +V S+DLS N  + 
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLD-ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 724 HIPTQLTSLKYLSVLNLSYNQ 744
            I   L +L  L  LN+ ++ 
Sbjct: 151 DI-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 27/226 (11%), Positives = 63/226 (27%), Gaps = 57/226 (25%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
              N  L  +       ++    + L  + + N  + D     +E    ++ L + +   
Sbjct: 24  AYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH- 77

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                +   I        + +   + T                             L+  
Sbjct: 78  ---ATNYNPISGLSNLERLRIMGKDVTSDKIP-----------------------NLSG- 110

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
                               LT    +D+S +     I   +  L  +  ++ +S+N   
Sbjct: 111 --------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSID-LSYNGAI 149

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 744
            DI   L+ L E++SL++  + +  +    +     L+ L      
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 40/204 (19%), Positives = 77/204 (37%), Gaps = 26/204 (12%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L N +   L    +   T+L    +L  ++     N+ +     L     F NL  L LS
Sbjct: 18  LANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKELHLS 71

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              IS+    L+ L +L+  ++++NR+   ++     +    L  L L NN L + +   
Sbjct: 72  HNQISDLSP-LKDLTKLEELSVNRNRLK-NLNG----IPSACLSRLFLDNNELRDTDSL- 124

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
             ++  L        ++L +R N     I         L  L+L+GN +     L+    
Sbjct: 125 -IHLKNL--------EILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RL 171

Query: 542 HHLEVLDVGNNQINDNFPNWLEIL 565
             +  +D+   +  +    +   L
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 29/201 (14%)

Query: 379 TELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQL 438
            +++    L N     +    +   T L        +        NI      ++    L
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSV---TDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNL 65

Query: 439 QWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV 498
           +  +LS N+I   +S  + DL  T L  L ++ N L N+   P   +++L  D+N     
Sbjct: 66  KELHLSHNQIS-DLSP-LKDL--TKLEELSVNRNRLKNLNGIPSACLSRLFLDNN----- 116

Query: 499 LDMRMNNFNGKIS--QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND 556
                     ++      ++  NL  L++  N+L+  + L       LEVLD+  N+I +
Sbjct: 117 ----------ELRDTDSLIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGNEITN 164

Query: 557 NFPNWLEILPELQVLILRSNR 577
                L  L ++  + L   +
Sbjct: 165 TGG--LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 40/220 (18%)

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
                +    P       +    ++G   + D      + L  +Q     ++     I  
Sbjct: 4   QRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN----IQS 55

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESI 644
              +  F   + + LSHN+ + + P   L   + +    N                    
Sbjct: 56  LAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR------------------- 96

Query: 645 ILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSL 704
           +  + GI       L       L +N+ +    + +  L  L+ L+ I +N L   I  L
Sbjct: 97  LKNLNGIPSACLSRL------FLDNNELRD--TDSLIHLKNLEILS-IRNNKLK-SIVML 146

Query: 705 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 744
              L+++E LDL  N +       LT LK ++ ++L+  +
Sbjct: 147 -GFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 7e-17
 Identities = 63/348 (18%), Positives = 96/348 (27%), Gaps = 86/348 (24%)

Query: 409 NSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWD-LGITALYYL 467
             S   L     +  ++ +F DI+++L  L+   +   RI  RI       LGI+ L  L
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNG 527
            L N  +T     P    T  +                              L  LNL  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPD------------------------------LNILNLRN 130

Query: 528 NRLEGPLP----LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
                       L       L+VL +      +     + + P L  L L  N   G  G
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 584 DNTTIVP--FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY 641
             + + P  FP  +++ L +                + +      ++             
Sbjct: 191 LISALCPLKFPTLQVLALRNAGME------TPSGVCSALAAARVQLQG------------ 232

Query: 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNNISHNNLTGD 700
                                  +DLS N  +           + L  LN +S   L   
Sbjct: 233 -----------------------LDLSHNSLRDAAGAPSCDWPSQLNSLN-LSFTGLKQV 268

Query: 701 IPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 748
              L   L     LDLS N L    P     L  +  L+L  N F   
Sbjct: 269 PKGLPAKL---SVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 50/278 (17%), Positives = 86/278 (30%), Gaps = 37/278 (13%)

Query: 341 YAEPHFSSNQLSGSIPSSVYELE----NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS 396
           +++P    +     + ++  EL     +L  L    +  +   +  D  K  +LK L V 
Sbjct: 17  FSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVR 76

Query: 397 NNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWM 456
             R+           F  L  LG+S                LQ   L    + G     +
Sbjct: 77  AARIP------SRILFGALRVLGIS---------------GLQELTLENLEVTGTAPPPL 115

Query: 457 WDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVN 516
            +     L  L+L N      + +      +L        KVL +   +      ++   
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLA----ELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNC----HHLEVLDVGNNQIN---DNFPNWLEILPELQ 569
              L+ L+L+ N   G   L    C      L+VL + N  +               +LQ
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 570 VLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
            L L  N      G  +   P  +   ++LS      V
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGLKQV 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 9e-12
 Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 25/254 (9%)

Query: 517 SCNLTNLNLNGNRLEGPLPLSLV----NCHHLEVLDVGNNQINDNFPNWLEILPELQV-- 570
           SCN ++   + +     L  + V        LE L    +   D    + +I+  L +  
Sbjct: 14  SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQ-FTDIIKSLSLKR 72

Query: 571 LILRSNRF-WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG---NNNS 626
           L +R+ R     +     ++     + + L + E TG  P   L+     ++     N S
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 627 VEVDYMTPLNSSNYYESII-------LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPE- 678
                        + +  +               +  R+     T+DLS N   G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 679 ---VVGKLNLLKGLN--NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS-L 732
                 K   L+ L   N      +G   +L     +++ LDLS N L            
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 733 KYLSVLNLSYNQFE 746
             L+ LNLS+   +
Sbjct: 253 SQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 26/200 (13%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTT----ELYDFAKLKNLKWLFVSNNRL 400
           +  +   +    + + EL+  +   L    ++                 L  L +S+N  
Sbjct: 127 NLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 401 SLSTKLK---VNSSFPNLFGLGLSACNISEFPDI----LRTLHQLQWFNLSKNRIHGRIS 453
                L        FP L  L L    +     +         QLQ  +LS N +     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 454 SWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK 513
           +       + L  L+LS   L  +    P  +            VLD+  N  +   S  
Sbjct: 246 APSC-DWPSQLNSLNLSFTGLKQVPKGLPAKL-----------SVLDLSYNRLDRNPS-- 291

Query: 514 FVNSCNLTNLNLNGNRLEGP 533
                 + NL+L GN     
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 30/140 (21%), Positives = 43/140 (30%), Gaps = 14/140 (10%)

Query: 346 FSSNQLSGSI-------PSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN 398
            S N   G         P     L+ L L        SG       A    L+ L +S+N
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA-LAAARVQLQGLDLSHN 238

Query: 399 RLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWD 458
            L  +           L  L LS   + + P  L    +L   +LS NR+          
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRL----DRNPSP 292

Query: 459 LGITALYYLDLSNNFLTNIE 478
             +  +  L L  N   + E
Sbjct: 293 DELPQVGNLSLKGNPFLDSE 312

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.5 bits (196), Expect = 6e-16
 Identities = 49/259 (18%), Positives = 94/259 (36%), Gaps = 22/259 (8%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
             ++++  IPS +    N I LR    +L    +   F+   +L+ + +S N +    + 
Sbjct: 17  QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 407 KVNSSFPNLFGLGLSACN-ISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            V S+ P L  + +   N +     +  + L  LQ+  +S   I   +   +  +     
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD-VHKIHSLQK 130

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
             LD+ +N   NI      +   L+F+S     +L +  N    +I     N   L  LN
Sbjct: 131 VLLDIQDN--INIHTIERNSFVGLSFES----VILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 525 L-NGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
           L + N LE              +LD+   +I+      LE L +L+     + +      
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-- 241

Query: 584 DNTTIVPFPRFRIIDLSHN 602
               +          L++ 
Sbjct: 242 ----LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 46/252 (18%), Positives = 76/252 (30%), Gaps = 25/252 (9%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSN-NRLSL 402
            F   +L   I    +    +L  + +  N +    E   F+ L  L  + +   N L  
Sbjct: 36  RFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL- 93

Query: 403 STKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
               +   + PNL  L +S   I   PD       Q    ++  N     I    +    
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 462 TALYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTH-KVLDMRMNN 505
                L L+ N +  I    F  T + +LN   N              +   +LD+    
Sbjct: 154 FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 506 FNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEIL 565
            +   S    N   L   +    +    LP +L     L    +        F NW   +
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKK---LP-TLEKLVALMEASLTYPSHCCAFANWRRQI 269

Query: 566 PELQVLILRSNR 577
            EL  +  +S  
Sbjct: 270 SELHPICNKSIL 281

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 46/284 (16%), Positives = 80/284 (28%), Gaps = 69/284 (24%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKISQK-FVNSCNLTNLN 524
                + +T I    P N  +L F    L               I +  F    +L  + 
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELRFVLTKLRV-------------IQKGAFSGFGDLEKIE 60

Query: 525 LNGNRLEGPLPLS----LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWG 580
           ++ N +   +       L   H + +     N +    P   + LP LQ L++ +     
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLYINPEAFQNLPNLQYLLISNTG--- 115

Query: 581 PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY 640
                          I  L        L    LD     +  N N   ++  + +     
Sbjct: 116 ---------------IKHLPDVHKIHSLQKVLLD-----IQDNINIHTIERNSFVG---- 151

Query: 641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD 700
                L+ +             + + L+ N  Q           L + LN   +NNL   
Sbjct: 152 -----LSFE------------SVILWLNKNGIQEIHNSAFNGTQLDE-LNLSDNNNLEEL 193

Query: 701 IPSLLRNLTEVESLDLSSN---MLVGHIPTQLTSLKYLSVLNLS 741
              +    +    LD+S      L  +    L  L+  S  NL 
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 47/235 (20%), Positives = 84/235 (35%), Gaps = 37/235 (15%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-SL 402
             S N L   + S   +    L +L L    +  T E   +  L +L  L ++ N + SL
Sbjct: 34  DLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 403 STKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
           +      S   +L  L     N++   +  +  L  L+  N++ N I        +   +
Sbjct: 92  AL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NL 148

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
           T L +LDLS+N + +I     T++  L     +    L                      
Sbjct: 149 TNLEHLDLSSNKIQSI---YCTDLRVL---HQMPLLNLS--------------------- 181

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
            L+L+ N +   +         L+ L +  NQ+        + L  LQ + L +N
Sbjct: 182 -LDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 24/188 (12%)

Query: 438 LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHK 497
            +  +LS N +   + S+ +      L  LDLS   +  IE     +++ L         
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHL--------S 79

Query: 498 VLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQI--- 554
            L +  N         F    +L  L      L       + +   L+ L+V +N I   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 555 --NDNFPNWLEILPELQVLILRSNRFWG-PIG--DNTTIVPFPRFRIIDLSHNEFTGVLP 609
              + F N    L  L+ L L SN+              +P      +DLS N     + 
Sbjct: 140 KLPEYFSN----LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMN-FIQ 193

Query: 610 TGYLDNFK 617
            G     +
Sbjct: 194 PGAFKEIR 201

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 46/239 (19%), Positives = 74/239 (30%), Gaps = 47/239 (19%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNR- 577
           +  NL+L+ N L      S  +   L+VLD+   +I        + L  L  LIL  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 578 -------FWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH---GNNNSV 627
                  F G              + +          L    + + K +      +N   
Sbjct: 89  QSLALGAFSGL----------SSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNL-- 135

Query: 628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 687
               +       Y+ +               LT    +DLSSNK Q      +  L+ + 
Sbjct: 136 ----IQSFKLPEYFSN---------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 688 GLN---NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
            LN   ++S N +   I         ++ L L +N L          L  L  + L  N
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 47/230 (20%), Positives = 73/230 (31%), Gaps = 42/230 (18%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
               L+ ++P  +   ++  +L L  N L  T  L        L  L +    L   TKL
Sbjct: 18  DKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL---TKL 70

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
           +V+ + P L  L LS   +   P + +TL  L   ++S NR+   +       G+  L  
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR-GLGELQE 128

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           L L  N L  +    P  +                                  L  L+L 
Sbjct: 129 LYLKGNELKTL----PPGL----LTP-TP-----------------------KLEKLSLA 156

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
            N L       L    +L+ L +  N +    P        L    L  N
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.3 bits (162), Expect = 7e-12
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 21/187 (11%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-SLS 403
           H S N L     +++     L  L L    L   T+L     L  L  L +S+N+L SL 
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLP 93

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
               +  + P L  L +S   ++  P   LR L +LQ   L  N +   +   +      
Sbjct: 94  L---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT-PTP 148

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKISQKFVNSCNLT 521
            L  L L+NN LT +    P  +     +  L +   L ++ N+    I + F  S  L 
Sbjct: 149 KLEKLSLANNNLTEL----PAGL----LN-GLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 522 NLNLNGN 528
              L+GN
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 46/232 (19%), Positives = 73/232 (31%), Gaps = 65/232 (28%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIN--DNFPNWLEILPELQVLILRSN 576
           + T L+L+ N L      +L+    L  L++   ++            LP L  L L  N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHN 87

Query: 577 RFWGPIGDNTTIVPF-----PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY 631
           +           +P      P   ++D+S N  T  LP G L                  
Sbjct: 88  QL--------QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG---------------- 122

Query: 632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN 691
                                      L     + L  N+ +   P ++     L+ L +
Sbjct: 123 ---------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKL-S 154

Query: 692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 743
           +++NNLT     LL  L  +++L L  N L   IP        L    L  N
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 46/162 (28%), Positives = 61/162 (37%), Gaps = 30/162 (18%)

Query: 462 TALYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSC 518
                L LS N L         P T +TQLN D     K+             Q      
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-------------QVDGTLP 77

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
            L  L+L+ N+L+  LPL       L VLDV  N++       L  L ELQ L L+ N  
Sbjct: 78  VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 579 WGPIGDNTTI-----VPFPRFRIIDLSHNEFTGVLPTGYLDN 615
                   T+      P P+   + L++N  T  LP G L+ 
Sbjct: 137 -------KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSS 718
            T    ++L   +      +V G L +L  L+ +SHN L   +P L + L  +  LD+S 
Sbjct: 54  YTRLTQLNLDRAELT--KLQVDGTLPVLGTLD-LSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 719 NMLVGHIP----TQLTSLKYLSVLNLSYNQ 744
           N L   +P      L  L+ L    L  N+
Sbjct: 110 NRLT-SLPLGALRGLGELQELY---LKGNE 135

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVE 712
           +Q++  L +  T+DLS N+ Q  +P +   L  L  L+ +S N LT      LR L E++
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLD-VSFNRLTSLPLGALRGLGELQ 127

Query: 713 SLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQ 744
            L L  N L   +P    T    L+    L+L+ N 
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEK---LSLANNN 159

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.1 bits (167), Expect = 5e-12
 Identities = 70/441 (15%), Positives = 126/441 (28%), Gaps = 112/441 (25%)

Query: 362 LENLILLRLPSNRLS--GTTELYD-FAKLKNLKWLFVSNNRLS------LSTKLKVNSSF 412
           L+   ++RL    L+     ++         L  L + +N L       +   L+  S  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC- 85

Query: 413 PNLFGLGLSACNISE-----FPDILRTLHQLQWFNLSKNRIHGR----ISSWMWDLGITA 463
             +  L L  C ++          LRTL  LQ  +LS N +       +   + D     
Sbjct: 86  -KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ-CR 143

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLN--FDSNLTHKVLDMRMNNFNGKISQKF-----VN 516
           L  L L    L+        +   L     +    K L +  N+ N    +        +
Sbjct: 144 LEKLQLEYCSLS------AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 517 SCNLTNLNLNGNRL--EGPLPLS--LVNCHHLEVLDVGNNQINDN-----FPNWLEILPE 567
            C L  L L    +  +    L   + +   L  L +G+N++ D       P  L     
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 568 LQVLILRSNRFWGPIG---------DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKA 618
           L+ L +         G            ++      + + L+ NE       G     + 
Sbjct: 258 LRTLWIWECGI-TAKGCGDLCRVLRAKESL------KELSLAGNELG---DEGARLLCET 307

Query: 619 MMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG---- 674
           ++                         L                 ++ + S  F      
Sbjct: 308 LLEPGCQ--------------------LE----------------SLWVKSCSFTAACCS 331

Query: 675 GIPEVVGKLNLLKGLNNISHNNLTGD-----IPSLLRNLTEVESLDLSSNML----VGHI 725
               V+ +   L  L  IS+N L           L +  + +  L L+   +       +
Sbjct: 332 HFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390

Query: 726 PTQLTSLKYLSVLNLSYNQFE 746
              L +   L  L+LS N   
Sbjct: 391 AATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.8 bits (143), Expect = 4e-09
 Identities = 71/413 (17%), Positives = 121/413 (29%), Gaps = 115/413 (27%)

Query: 388 KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE-----FPDILRTLHQLQWFN 442
            +++ L +    LS +   ++         + L  C ++E         LR    L   N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 443 LSKNRIHGRISSWMWDLGITALY-----------YLDLSNNFLTN--IEYFPPTNMTQLN 489
           L  N +         D+G+  +             L L N  LT         T    L 
Sbjct: 63  LRSNELG--------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST----LR 110

Query: 490 FDSNLTHKVLDMRMNNFNGK----ISQKFV-NSCNLTNLNLNGNRL--EGPLPLS--LVN 540
               L    L +  N         + +  +   C L  L L    L      PL+  L  
Sbjct: 111 TLPTLQE--LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRA 168

Query: 541 CHHLEVLDVGNNQINDNFPNWL-EILPE----LQVLILRSNRFWGPIG---------DNT 586
               + L V NN IN+     L + L +    L+ L L S                    
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKA 227

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIIL 646
           ++      R + L  N+       G  +    ++H ++                     L
Sbjct: 228 SL------RELALGSNKLGD---VGMAELCPGLLHPSSR--------------------L 258

Query: 647 TIKGIDIQIERILTIFMTIDLSSNKFQ----GGIPEVVGKLNLLKGLNNISHNNLTGD-- 700
                            T+ +          G +  V+     LK L +++ N L  +  
Sbjct: 259 R----------------TLWIWECGITAKGCGDLCRVLRAKESLKEL-SLAGNELGDEGA 301

Query: 701 ---IPSLLRNLTEVESLDLSSNML----VGHIPTQLTSLKYLSVLNLSYNQFE 746
                +LL    ++ESL + S         H  + L   ++L  L +S N+ E
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 5e-09
 Identities = 46/253 (18%), Positives = 82/253 (32%), Gaps = 51/253 (20%)

Query: 364 NLILLRLPSNRLS--GTTELYD-FAKLKNLKWLFVSNNRLS-------LSTKLKVNSSFP 413
            L  L+L S  ++     +L    A   +L+ L + +N+L            L  +S   
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR-- 257

Query: 414 NLFGLGLSACNISE-----FPDILRTLHQLQWFNLSKNRIHG----RISSWMWDLGITAL 464
            L  L +  C I+         +LR    L+  +L+ N +       +   + + G   L
Sbjct: 258 -LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG-CQL 315

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF-----VNSCN 519
             L + +   T       +++   N    L    L +  N       ++           
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQN--RFLLE--LQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 520 LTNLNLNGNRL--EGPLPLS--LVNCHHLEVLDVGNNQIND----------NFPNWLEIL 565
           L  L L    +       L+  L+  H L  LD+ NN + D            P  L   
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL--- 428

Query: 566 PELQVLILRSNRF 578
             L+ L+L    +
Sbjct: 429 --LEQLVLYDIYW 439

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.5 bits (159), Expect = 4e-11
 Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 27/309 (8%)

Query: 272 YVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWL 331
            V       +  R      + + A   + W++             +  A +   +     
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 332 QVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLK 391
              +       +                   E L    L   + +      +    K L+
Sbjct: 318 FRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE--SCKELQ 375

Query: 392 WLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGR 451
            L    N+  L T + +  +   L     +    S     L+ +  ++   L   R    
Sbjct: 376 ELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFST----LKAVDPMRAAYLDDLRSKFL 430

Query: 452 ISSWMWDLGITALYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN-LTHKVLDMRMNNFNGK 509
           + + +  +    +  L L++  LT + +      +T L+   N L               
Sbjct: 431 LENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-------------A 477

Query: 510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI--LPE 567
           +         L  L  + N LE    ++  N   L+ L + NN++         +   P 
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCNNRLQQ-SAAIQPLVSCPR 534

Query: 568 LQVLILRSN 576
           L +L L+ N
Sbjct: 535 LVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 6e-09
 Identities = 38/220 (17%), Positives = 74/220 (33%), Gaps = 44/220 (20%)

Query: 357 SSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLF 416
           + +  +  L  L      L   + L     ++      + +  L  ++ LK+  +   + 
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV- 445

Query: 417 GLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTN 476
            L L+  +++     L  L  +   +LS NR+   +   +  L    L  L  S+N L N
Sbjct: 446 -LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL--RCLEVLQASDNALEN 500

Query: 477 IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEG-PLP 535
           ++      +  L                               L  L L  NRL+     
Sbjct: 501 VD-----GVANL-----------------------------PRLQELLLCNNRLQQSAAI 526

Query: 536 LSLVNCHHLEVLDVGNNQINDNFPNW---LEILPELQVLI 572
             LV+C  L +L++  N +           E+LP +  ++
Sbjct: 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             S N+L  ++P ++  L  L +L+   N L     +   A L  L+ L + NNRL  S 
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNAL---ENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQL 438
            ++   S P L  L L   ++ +   I   L ++
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 21/326 (6%)

Query: 425 ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTN 484
           +                  +   +       +     T L  +D +   +          
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 485 MTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHL 544
            + +         + D             +  S +     L  +R E            L
Sbjct: 296 PSHVWLCDLPAASLND---QLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSATDEQL 351

Query: 545 EVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEF 604
              ++   +      + LE   ELQ L   +           TI+   R     L   E 
Sbjct: 352 FRCELSVEKST-VLQSELESCKELQELEPENKWC------LLTIILLMRALDPLLYEKET 404

Query: 605 TGVLPT-GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI-QIERI--LT 660
                T   +D  +A    +  S  +     +    Y +  +L +   D+  +  +  L 
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLEN-SVLKMEYADVRVLHLAHKDLTVLCHLEQLL 463

Query: 661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNM 720
           +   +DLS N+ +  +P  +  L  L+ L   S N L  ++  +  NL  ++ L L +N 
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQ-ASDNALE-NVDGV-ANLPRLQELLLCNNR 519

Query: 721 LVGH-IPTQLTSLKYLSVLNLSYNQF 745
           L        L S   L +LNL  N  
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 45/272 (16%), Positives = 83/272 (30%), Gaps = 19/272 (6%)

Query: 481 PPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN 540
           P   +  ++         +        G      +   +   L++     +G    S V 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 541 CHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLS 600
              L    + +      F          +  +L  +R      D+ T     R    +LS
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR---CELS 357

Query: 601 HNEFTGVLPTGYLDNFKAMMHGNNNSV-----EVDYMTPLNSSNYYESIILTIKGID-IQ 654
             + T +     L++ K +      +       +  M  L+   Y +  +     +  + 
Sbjct: 358 VEKSTVL--QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESL 714
             R   +         +      E      L     +++H +LT  +  L   L  V  L
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVL-----HLAHKDLT-VLCHL-EQLLLVTHL 468

Query: 715 DLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
           DLS N L   +P  L +L+ L VL  S N  E
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 38/283 (13%), Positives = 88/283 (31%), Gaps = 11/283 (3%)

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL 523
           +   +   +   +      + M  L    +     ++ R  +   + S  ++      +L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 583
           N    +    +  +  +     VL     +         E L   ++ + +S      + 
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE 369

Query: 584 DNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYES 643
               +          L     T +L    LD              +  + P+ ++   + 
Sbjct: 370 SCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425

Query: 644 IILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPS 703
               +    +       +   + L+       +   + +L L+  L+ +SHN L   +P 
Sbjct: 426 RSKFLLENSVLKMEYADVR-VLHLAHKDLT--VLCHLEQLLLVTHLD-LSHNRLR-ALPP 480

Query: 704 LLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 746
            L  L  +E L  S N L  ++   + +L  L  L L  N+ +
Sbjct: 481 ALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 8e-04
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S N L  ++   V  L  L  L L +NRL  +  +        L  L +  N L     +
Sbjct: 494 SDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 407 --KVNSSFPNL 415
             ++    P++
Sbjct: 552 QERLAEMLPSV 562

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 43/189 (22%), Positives = 66/189 (34%), Gaps = 18/189 (9%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S  QL  ++P S+       LL L  N LS     +   +L NL  L +S+N L     +
Sbjct: 26  SKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---NFI 79

Query: 407 KVN--SSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
                   PNL  L LS+ ++      +   L  L+   L  N I   +    ++  +  
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE-DMAQ 137

Query: 464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT-- 521
           L  L LS N ++        +  +L     L    LD+  N                   
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKL---PKLML--LDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 522 NLNLNGNRL 530
            L L+ N L
Sbjct: 193 GLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 42/191 (21%), Positives = 65/191 (34%), Gaps = 41/191 (21%)

Query: 418 LGLSACNISEFP--DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT 475
           L LS  N+S          L  L    LS N ++  ISS  +   +  L YLDLS+N L 
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFV-PVPNLRYLDLSSNHLH 101

Query: 476 NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP 535
            +       +    F  +L                         L  L L  N +     
Sbjct: 102 TL----DEFL----FS-DLQ-----------------------ALEVLLLYNNHIVVVDR 129

Query: 536 LSLVNCHHLEVLDVGNNQI----NDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF 591
            +  +   L+ L +  NQI     +   +    LP+L +L L SN+       +   +P 
Sbjct: 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188

Query: 592 PRFRIIDLSHN 602
                + L +N
Sbjct: 189 WVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 654 QIERI-------LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
            +  I       +     +DLSSN        +   L  L+ L  + +N++     +   
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL-LYNNHIVVVDRNAFE 133

Query: 707 NLTEVESLDLSSNMLVGHIPTQ----LTSLKYLSVLNLSYNQFEGPIPQGS 753
           ++ +++ L LS N +    P +       L  L +L+LS N+ +  +P   
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTD 182

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 38/213 (17%), Positives = 67/213 (31%), Gaps = 23/213 (10%)

Query: 345 HFSSNQLSGSIPSSV-YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
                 L  +IPS     L N+  + +  +      E + F  L  +  + + N R    
Sbjct: 37  KLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFPDI--LRTLHQLQWFNLSKNRIHGRISSWMWDLGI 461
                    P L  LG+    +  FPD+  + +        ++ N     I    +    
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 462 TALYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN 519
                L L NN  T+++   F  T +  +  + N    V+D     F G  S        
Sbjct: 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA--FGGVYS-------G 206

Query: 520 LTNLNLNGNRLE-------GPLP-LSLVNCHHL 544
            + L+++   +          L  L   N   L
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 36/243 (14%), Positives = 67/243 (27%), Gaps = 57/243 (23%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS-NNRLSLSTK 405
           +   +   IPS      +   L+L    L  T   + F+ L N+  ++VS +  L     
Sbjct: 19  TCKDIQ-RIPSL---PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ---- 69

Query: 406 LKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY 465
                              +         L ++    +   R    I        +  L 
Sbjct: 70  ------------------QLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALK-ELPLLK 108

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFVNSCNLT-NL 523
           +L + N  L                 S     +L++  N +   I    F   CN T  L
Sbjct: 109 FLGIFNTGLKMFPDLT-------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPE---------LQVLILR 574
            L  N     +     N   L+ + +  N        +L ++ +           +L + 
Sbjct: 162 KLYNNGFTS-VQGYAFNGTKLDAVYLNKN-------KYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 575 SNR 577
              
Sbjct: 214 QTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 55/235 (23%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV-GNNQINDNFPNWLEILPELQVLILRSNR 577
           +   L L    L      +  N  ++  + V  +  +     +    L ++  + +R+ R
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 578 FWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNS 637
               I D   +   P  + + + +           + +                      
Sbjct: 92  NLTYI-DPDALKELPLLKFLGIFNTGLKMFPDLTKVYS---------------------- 128

Query: 638 SNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVV--GKLNLLKGLNNISHN 695
                                  IF  ++++ N +   IP     G  N    L  + +N
Sbjct: 129 ---------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK-LYNN 166

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQFE 746
             T  +     N T+++++ L+ N  +  I       + S    S+L++S     
Sbjct: 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PSLLDVSQTSVT 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 25/191 (13%)

Query: 345 HFSSNQLSGSIPSSVYE-LENLILLRLPSNRLS----GTTELYDFAKLKNLKWLFVSNNR 399
              SN+LS S+PS  +  L  L LL L  N+L     G      F +LKNL+ L+V++N+
Sbjct: 43  DLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKNLETLWVTDNK 96

Query: 400 L-SLSTKLKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMW 457
           L +L     V     NL  L L    +   P  +  +L +L + +L  N +   +   ++
Sbjct: 97  LQALPI--GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 458 DLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS 517
           D  +T+L  L L NN L  +    P       FD     K L +  N         F + 
Sbjct: 154 D-KLTSLKELRLYNNQLKRV----PEGA----FDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 518 CNLTNLNLNGN 528
             L  L L  N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 42/232 (18%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-SLSTK 405
           SS +L+ +IPS++    +   L L SN+LS +     F +L  L+ L++++N+L +L   
Sbjct: 24  SSKKLT-AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPA- 78

Query: 406 LKVNSSFPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
             +     NL  L ++   +   P  +   L  L    L +N++   +   ++D  +T L
Sbjct: 79  -GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFD-SLTKL 135

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            YL L  N L ++    P  +    FD  LT                       +L  L 
Sbjct: 136 TYLSLGYNELQSL----PKGV----FDK-LT-----------------------SLKELR 163

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
           L  N+L+     +      L+ L + NNQ+        + L +L++L L+ N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 42/280 (15%), Positives = 71/280 (25%), Gaps = 80/280 (28%)

Query: 385 AKLKNLKWLFVSNNRLS------LSTKLKVNSSFPNLFGLGLSACNISEFPDI------- 431
            +  ++K + +S N +       LS  +       +L     S        D        
Sbjct: 29  LEDDSVKEIVLSGNTIGTEAARWLSENIASK---KDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 432 ----LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY----------YLDLSNNFLTN- 476
               L    +L    LS N                 L           +L L NN L   
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFG--------PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 477 ----IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----ISQKFVNSCNLTNLNLNGN 528
               I              +    + +    N          ++ F +   L  + +  N
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197

Query: 529 RL-----EGPLPLSLVNCHHLEVLDVGNNQINDN----FPNWLEILPELQVLILRSNRFW 579
            +     E  L   L  C  L+VLD+ +N             L+  P L+ L L      
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-- 255

Query: 580 GPIGD--------------NTTIVPFPRFRIIDLSHNEFT 605
             +                N  +      + + L +NE  
Sbjct: 256 --LSARGAAAVVDAFSKLENIGL------QTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 51/386 (13%), Positives = 97/386 (25%), Gaps = 131/386 (33%)

Query: 415 LFGLGLSACNISE-----FPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA------ 463
           + G  L    I+         +L     ++   LS N I G                   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-G-------TEAARWLSENIA 57

Query: 464 ----LYYLDLSNNFLTNIEYFPPTNMTQLN--FDSNLTHKVLDMRMNNFNGK----ISQK 513
               L   + S+ F   ++   P  +  L            + +  N F       +   
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 514 FVNSCNLTNLNLNGNRL-------------EGPLPLSLVNCHHLEVLDVGNNQINDN--- 557
                 L +L L+ N L             E  +     N   L  +  G N++ +    
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 558 -FPNWLEILPELQVLILRSNRFWGPIG----------DNTTIVPFPRFRIIDLSHNEFTG 606
            +    +    L  + +  N    P G              +      +++DL  N FT 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQEL------KVLDLQDNTFT- 229

Query: 607 VLPTG--YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMT 664
               G   L    A+   +  ++                                     
Sbjct: 230 --HLGSSAL----AIALKSWPNLR-----------------------------------E 248

Query: 665 IDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNML--- 721
           + L+            G   ++   + + +  L               +L L  N +   
Sbjct: 249 LGLNDCLLSA-----RGAAAVVDAFSKLENIGLQ--------------TLRLQYNEIELD 289

Query: 722 -VGHIPTQL-TSLKYLSVLNLSYNQF 745
            V  + T +   +  L  L L+ N+F
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 27/183 (14%), Positives = 50/183 (27%), Gaps = 40/183 (21%)

Query: 375 LSGTTELYDFAKLKNLKWLFVSNNRL------SLSTKLKVNSSFPNLFGLGLSACNISE- 427
           L              L+ +    NRL        +   + +     L  + +    I   
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNGIRPE 202

Query: 428 -----FPDILRTLHQLQWFNLSKNRIHGR--------ISSWMWDLGITALYYLDLSNNFL 474
                  + L    +L+  +L  N             + SW        L  L L++  L
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW------PNLRELGLNDCLL 256

Query: 475 TN--IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV-----NSCNLTNLNLNG 527
           +           +   +   N+  + L ++ N       +           +L  L LNG
Sbjct: 257 SARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 528 NRL 530
           NR 
Sbjct: 313 NRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 40/280 (14%), Positives = 86/280 (30%), Gaps = 53/280 (18%)

Query: 492 SNLTHKVLDMRMNNFNGK----ISQKFVNSCNLTNLNLNGNRL--EGPLPLS--LVNCHH 543
           +  + +   ++++    +    +    +   ++  + L+GN +  E    LS  + +   
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE 603
           LE+ +  +           EI   L++L+         +     +        + LS N 
Sbjct: 62  LEIAEFSDIFTGRVKD---EIPEALRLLL-------QALLKCPKL------HTVRLSDNA 105

Query: 604 FT--GVLP-TGYLDNFKAMMH---GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIER 657
           F      P   +L     + H    NN       + P   +    ++         +   
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNG------LGPQAGAKIARALQELAVNKKAKNAP 159

Query: 658 ILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNNISHNNLTGD-----IPSLLRNL 708
            L    +I    N+ + G      +      LL  +  +  N +  +     +   L   
Sbjct: 160 PLR---SIICGRNRLENGSMKEWAKTFQSHRLLHTVK-MVQNGIRPEGIEHLLLEGLAYC 215

Query: 709 TEVESLDLSSNML----VGHIPTQLTSLKYLSVLNLSYNQ 744
            E++ LDL  N         +   L S   L  L L+   
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 39/249 (15%), Positives = 70/249 (28%), Gaps = 66/249 (26%)

Query: 364 NLILLRLPSNRLS--GTTELYDF-AKLKNLKWLFVSNNR------------LSLSTKLKV 408
            L  +RL  N         L DF +K   L+ L++ NN             L      K 
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 409 NSSFPNLFGLGLSACNISE-----FPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI-- 461
             + P L  +      +       +    ++   L    + +N I           GI  
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR--------PEGIEH 206

Query: 462 ---------TALYYLDLSNNFLTNI------EYFPPTNMTQLNFDSNLTHKVLDMRMNNF 506
                      L  LDL +N  T++            +   L        + L +     
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNL--------RELGLNDCLL 256

Query: 507 NGK----ISQ--KFVNSCNLTNLNLNGNRL--EGPLPLS---LVNCHHLEVLDVGNNQIN 555
           + +    +      + +  L  L L  N +  +    L          L  L++  N+ +
Sbjct: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

Query: 556 DNFPNWLEI 564
           +      EI
Sbjct: 317 EEDDVVDEI 325

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 91/332 (27%)

Query: 459 LGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----ISQKF 514
           +   ++    L  + +T  +      +  L  D ++    + +  N    +    +S+  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAV--LLEDDSVKE--IVLSGNTIGTEAARWLSENI 56

Query: 515 VNSCNLTNLNLNGNRL-----EGPLPLS-----LVNCHHLEVLDVGNNQINDN----FPN 560
            +  +L     +         E P  L      L+ C  L  + + +N           +
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 561 WLEILPELQVLILRSNRFWGPIG------------DNTTIVPFPRFRIIDLSHNEFTGVL 608
           +L     L+ L L +N   GP               N      P  R I    N      
Sbjct: 117 FLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENG 174

Query: 609 PTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLS 668
                    A    ++  +                                    T+ + 
Sbjct: 175 SMKEW----AKTFQSHRLLH-----------------------------------TVKMV 195

Query: 669 SNKF-----QGGIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSSN 719
            N       +  + E +     LK L+ +  N  T      +   L++   +  L L+  
Sbjct: 196 QNGIRPEGIEHLLLEGLAYCQELKVLD-LQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

Query: 720 ML----VGHIPTQLTSL--KYLSVLNLSYNQF 745
           +L       +    + L    L  L L YN+ 
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 86/644 (13%), Positives = 179/644 (27%), Gaps = 182/644 (28%)

Query: 89  LPHIRKLNLAF-NDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL---- 143
           L        AF ++F+  ++       +S+    LS       I  S D ++ +      
Sbjct: 22  LSVFED---AFVDNFDCKDVQD---MPKSI----LSKEEI-DHIIMSKDAVSGTLRLFWT 70

Query: 144 ----STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYL 199
                   +  F   +  +++ K  FL   ++ E     +      E+ + L  ++ ++ 
Sbjct: 71  LLSKQEEMVQKF-VEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 200 LLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDL------GEAKKILGMEICRNRTCGKTM 253
             +V              KL+  L +    K++      G  K  + +++C +      M
Sbjct: 128 KYNV-------SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 254 D-------VGLLFEQDDTLGQSVNGY--VDSDYIGDLDKRRSITGYVFNFAGGPIN---- 300
           D       +      +  L         +D ++    D   +I     +     +     
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLK 239

Query: 301 -------------------WKS-TLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRH 340
                              W +  L   ++L+T   +   +T  +  A            
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ---VTDFLSAA------------ 284

Query: 341 YAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL 400
               H S +  S ++       E   LL                     LK+L      L
Sbjct: 285 -TTTHISLDHHSMTL----TPDEVKSLL---------------------LKYLDCRPQDL 318

Query: 401 SLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLG 460
                   N   P    L + A +I +            W +++ +++   I S      
Sbjct: 319 PREVL-TTN---P--RRLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIES-----S 362

Query: 461 ITAL-------YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK 513
           +  L        +  LS      +  FPP         +++   +L +   +        
Sbjct: 363 LNVLEPAEYRKMFDRLS------V--FPP--------SAHIPTILLSLIWFDVIKSDVMV 406

Query: 514 FVNSCN---LTNLNLNGNRLEGPLPLSLVNCH-------HLEVLDVGNNQINDNFPNWLE 563
            VN  +   L       + +  P     +          H  ++D  +  I   F +   
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDL 464

Query: 564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLD-NF---KAM 619
           I P L         F+  IG            + ++ H E   +    +LD  F   K  
Sbjct: 465 IPPYL------DQYFYSHIG----------HHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 620 MHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM 663
                 +     +  L    +Y+  I        ++   +  F+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 2e-08
 Identities = 86/619 (13%), Positives = 164/619 (26%), Gaps = 209/619 (33%)

Query: 202 HVD-DM-EIASKSKDEIEKLKTQLNQEFEMKDLGEA-KKILGMEICRNRTCGKTMDVG-- 256
           H+D +  E   + KD +   +      F+ KD+ +  K IL  E   +    K    G  
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 257 LLF-----EQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVL 311
            LF     +Q++ + + V   +  +Y                       +        ++
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINY----------------------KF--------LM 95

Query: 312 STTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLP 371
           S  + E    +   +  I             +  ++ NQ+      +V  L+  + LR  
Sbjct: 96  SPIKTEQRQPSMMTRMYI----------EQRDRLYNDNQV--FAKYNVSRLQPYLKLR-- 141

Query: 372 SNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLG--------LSAC 423
                    L    +L+  K + +                     G+         L  C
Sbjct: 142 -------QALL---ELRPAKNVLI--------------------DGVLGSGKTWVALDVC 171

Query: 424 N----ISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY 479
                  +         ++ W NL        +   +  L         +  N+ +  ++
Sbjct: 172 LSYKVQCKMDF------KIFWLNLKNCNSPETVLEMLQKL------LYQIDPNWTSRSDH 219

Query: 480 FP----PTNMTQLNFDSNLTHK-------VLDMRMNNFNGKISQKFVNSC---------N 519
                   +  Q      L  K       VL    N  N K    F  SC          
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI----LPELQVLILRS 575
           +T+           L    +     EV  +           +L+     LP   +     
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL--------LLKYLDCRPQDLPREVLTT--- 325

Query: 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLD-NFKAMMHGNNNSVEVDYMTP 634
                P      +          L+  +        +   N   +     +S+ V  + P
Sbjct: 326 ----NPR----RLSIIAESIRDGLATWDN-------WKHVNCDKLTTIIESSLNV--LEP 368

Query: 635 LNSSNYYESIILTI--KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGK-LNLL--KGL 689
                 ++   L++      I    +L++          +   I   V   +N L    L
Sbjct: 369 AEYRKMFDR--LSVFPPSAHIP-TILLSLI---------WFDVIKSDVMVVVNKLHKYSL 416

Query: 690 NNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL--SVLNLSYNQFEG 747
                   T  IPS+         L+L           +L +   L  S+++  YN    
Sbjct: 417 VEKQPKESTISIPSIY--------LELK---------VKLENEYALHRSIVD-HYN---- 454

Query: 748 PIPQGSQFNTF---RNDSY 763
            IP+    +       D Y
Sbjct: 455 -IPKTFDSDDLIPPYLDQY 472

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 38/164 (23%), Positives = 56/164 (34%), Gaps = 48/164 (29%)

Query: 418 LGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
           L      I +    L TL   +   LS N I  +ISS     G+  L  L L  N +  I
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLS---GMENLRILSLGRNLIKKI 85

Query: 478 EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLS 537
           E          N D+                           L  L ++ N++     + 
Sbjct: 86  E----------NLDAVAD-----------------------TLEELWISYNQIASLSGIE 112

Query: 538 LVNCHHLEVLDVGNNQINDNFPNWLEI-----LPELQVLILRSN 576
                +L VL + NN+I +    W EI     L +L+ L+L  N
Sbjct: 113 --KLVNLRVLYMSNNKITN----WGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 386 KLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSK 445
            LK  K L +S N +    K+   S   NL  L L    I +  ++      L+   +S 
Sbjct: 46  TLKACKHLALSTNNI---EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102

Query: 446 NRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPP----TNMTQLNFDSN 493
           N+I   +S       +  L  L +SNN +TN            +  L    N
Sbjct: 103 NQIA-SLSGIE---KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 16/116 (13%)

Query: 654 QIERI-----LTIFMTIDLSSNKFQ--GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
            IE+I     +     + L  N  +    +  V   L  L     IS+N +   +  +  
Sbjct: 59  NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEEL----WISYNQIA-SLSGI-E 112

Query: 707 NLTEVESLDLSSNML--VGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRN 760
            L  +  L +S+N +   G I  +L +L  L  L L+ N       + +  + +R 
Sbjct: 113 KLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 47/164 (28%)

Query: 442 NLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDM 501
           +     I  ++ + +  L   A  +L LS N +  I               +L+      
Sbjct: 31  HGMIPPIE-KMDATLSTL--KACKHLALSTNNIEKIS--------------SLSGME--- 70

Query: 502 RMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNW 561
                            NL  L+L  N ++    L       LE L +  NQI       
Sbjct: 71  -----------------NLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLSG-- 110

Query: 562 LEILPELQVLILRSNRFWGPIGDNTTIVP---FPRFRIIDLSHN 602
           +E L  L+VL + +N+    I +   I       +   + L+ N
Sbjct: 111 IEKLVNLRVLYMSNNK----ITNWGEIDKLAALDKLEDLLLAGN 150

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN---RLEGPLPLSLVNCHHLEVLD 548
           S++   VLD   +N  GK+         L  L+        +       L   + L+ L+
Sbjct: 17  SDVKELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLE 70

Query: 549 VGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605
           + +N+++       E  P L  L L  N+    +     +      + +DL + E T
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGL 420
              ++  L L ++R +         + + L++L   N  L   T +        L  L L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKLKKLEL 71

Query: 421 SACNISEFPDIL-RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY 479
           S   +S   ++L      L   NLS N+I   +S+      +  L  LDL N  +TN+  
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 480 F 480
           +
Sbjct: 131 Y 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKISQKFVNSCNLTNLNL 525
           L L N+     +                   + L   +N     I+        L  L L
Sbjct: 22  LVLDNSRSNEGK--------LEGLTDEFEELEFLST-INVGLTSIAN-LPKLNKLKKLEL 71

Query: 526 NGNRLEGPLPLSLVNCHHLEVLDVGNNQIND-NFPNWLEILPELQVLILRSN 576
           + NR+ G L +    C +L  L++  N+I D +    L+ L  L+ L L + 
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 42/159 (26%)

Query: 418 LGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
           L  S  N  +   +     +L++ +                            N  LT+I
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLST--------------------------INVGLTSI 57

Query: 478 EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLS 537
              P   + +L        K L++  N  +G +        NLT+LNL+GN+++    + 
Sbjct: 58  ANLP--KLNKL--------KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107

Query: 538 -LVNCHHLEVLDVGNNQINDNFPNW----LEILPELQVL 571
            L    +L+ LD+ N ++  N  ++     ++LP+L  L
Sbjct: 108 PLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 14/117 (11%)

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKISQKFVNSCNL 520
                LDL    +  IE          N  + L     +D   N    K+   F     L
Sbjct: 19  VRDRELDLRGYKIPVIE----------NLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRL 66

Query: 521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND-NFPNWLEILPELQVLILRSN 576
             L +N NR+             L  L + NN + +    + L  L  L  L +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 28/146 (19%)

Query: 467 LDLSNNFLTNIE-YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNL 525
           + L+   +     Y       +L+                    I            ++ 
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPV------------IENLGATLDQFDAIDF 49

Query: 526 NGN---RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 582
           + N   +L+G           L+ L V NN+I        + LP+L  LIL +N     +
Sbjct: 50  SDNEIRKLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS----L 100

Query: 583 GDNTTIVP---FPRFRIIDLSHNEFT 605
            +   + P         + +  N  T
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE 427
           ++L +  +    +  +       + L +   ++ +   L   ++      +  S   I +
Sbjct: 2   VKLTAELIEQAAQYTN---AVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRK 56

Query: 428 FPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE 478
                  L +L+   ++ NRI  RI   + D  +  L  L L+NN L  + 
Sbjct: 57  LDG-FPLLRRLKTLLVNNNRIC-RIGEGL-DQALPDLTELILTNNSLVELG 104

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 42/159 (26%)

Query: 418 LGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
           L L    I    ++  TL Q    + S N I  ++  +     +  L  L ++NN +  I
Sbjct: 24  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFP---LLRRLKTLLVNNNRICRI 79

Query: 478 EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLS 537
                  +                                 +LT L L  N L     L 
Sbjct: 80  GEGLDQALP--------------------------------DLTELILTNNSLVELGDLD 107

Query: 538 -LVNCHHLEVLDVGNNQINDNFPNW----LEILPELQVL 571
            L +   L  L +  N +  N  ++    +  +P+++VL
Sbjct: 108 PLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L+    +    N +    +L  F  L+ LK L V+NNR+       ++ + P+L  L L+
Sbjct: 41  LDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILT 96

Query: 422 ACNISEFPDI--LRTLHQLQWFNLSKNRI 448
             ++ E  D+  L +L  L +  + +N +
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRNPV 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN--SSFPNLFGLGLSACNI 425
           LRL +N  +       F KL  L+ +  SNN++   T ++         +  + L++  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLTSNRL 93

Query: 426 SEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPP-- 482
                 + + L  L+   L  NRI   + +  +  G++++  L L +N +T +    P  
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI-GLSSVRLLSLYDNQITTV---APGA 148

Query: 483 ----TNMTQLNFDSN 493
                +++ LN  +N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 491 DSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN---RLEGPLPLSLVNCHHLEVL 547
            + +   VLD   +N +GKI        NL  L+L       +       L     L+ L
Sbjct: 23  PAAVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISVSN-----LPKLPKLKKL 76

Query: 548 DVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605
           ++  N+I        E LP L  L L  N+    I     +      + +DL + E T
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            LD   +    IE             +   + + L + +N     +S        L  L 
Sbjct: 30  VLDNCKSNDGKIE----------GLTAEFVNLEFLSL-INVGLISVSN-LPKLPKLKKLE 77

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND-NFPNWLEILPELQVLILRSN 576
           L+ NR+ G L +      +L  L++  N++ D +    L+ L  L+ L L + 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKV 408
            +L    P++V EL     L    +       L    +  NL++L + N  L     +  
Sbjct: 16  LELRNRTPAAVRELV----LDNCKSNDGKIEGLTA--EFVNLEFLSLINVGL---ISVSN 66

Query: 409 NSSFPNLFGLGLSACNISEFPDILRT-LHQLQWFNLSKNRIHGRISSWMWDLGITALYYL 467
               P L  L LS   I    D+L   L  L   NLS N++   IS+      +  L  L
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL-KDISTLEPLKKLECLKSL 125

Query: 468 DLSNNFLTNIEYF 480
           DL N  +TN+  +
Sbjct: 126 DLFNCEVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 44/160 (27%)

Query: 418 LGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
           L     N  +   +      L++ +L                           N  L ++
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSL--------------------------INVGLISV 64

Query: 478 EYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPL 536
              P    + +L    N     LDM                 NLT+LNL+GN+L+    L
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----------NLTHLNLSGNKLKDISTL 113

Query: 537 S-LVNCHHLEVLDVGNNQINDNFPNW----LEILPELQVL 571
             L     L+ LD+ N ++  N  ++     ++LP+L  L
Sbjct: 114 EPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGL 420
           +L  L  L L  NR+ G  ++    KL NL  L +S N+L   + L+       L  L L
Sbjct: 69  KLPKLKKLELSENRIFGGLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 421 SACNISEFPD----ILRTLHQLQWFNLSKNRIHGRISS 454
             C ++   D    + + L QL + +           S
Sbjct: 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 355 IPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL-SLSTKLKVNSSFP 413
           +P ++ E+      RL  N +        F+  K L+ + +SNN++  L+          
Sbjct: 30  LPETITEI------RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLR 80

Query: 414 NLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNN 472
           +L  L L    I+E P  +   L  LQ   L+ N+I+  +    +   +  L  L L +N
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ-DLHNLNLLSLYDN 138

Query: 473 FLTNI--EYFPP-TNMTQLNFDSN 493
            L  I    F P   +  ++   N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 45/199 (22%)

Query: 387 LKNLKWLFVSNNRLS------LSTKLKVNSSFPNLFGLGLSACNISE--FPDILRTLHQL 438
           L +L+ L ++  R++      ++  L        L  + L++C +       +L    + 
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRH--ALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 439 QWFNLSKNRIHGRISSWMWDLGITALY-----------YLDLSNNFLTNI--EYFPPTNM 485
           +   L  N +               L             L LSNN LT           M
Sbjct: 129 RKLGLQLNSLG--------PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL----M 176

Query: 486 TQLNFDSNLTHKVLDMRMNNFNGK----ISQKFVNSCNLTNLNLNGNRL--EGPLPLS-- 537
             L  ++++TH  L +       +    ++ +   +  L  LN+  N       L L+  
Sbjct: 177 EGLAGNTSVTH--LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234

Query: 538 LVNCHHLEVLDVGNNQIND 556
                 LE+L +  N+++ 
Sbjct: 235 AREHPSLELLHLYFNELSS 253

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 39/257 (15%), Positives = 75/257 (29%), Gaps = 74/257 (28%)

Query: 364 NLILLRLPSNRLS--GTTELYDFAKLKN--LKWLFVSNNRLS------LSTKLKVNSSFP 413
           ++  L L  N L    + EL          +  L +S N LS      L   L       
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF-- 109

Query: 414 NLFGLGLSACNISE-----FPDILRTLHQ-LQWFNLSKNRIHGRISSWMWDLGITA---- 463
            +  L L   + S      F      L   +   NL  N +                   
Sbjct: 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG--------IKSSDELIQI 161

Query: 464 -------LYYLDLSNNFLTNI------EYF--PPTNMTQLNFDSNL-------------- 494
                  +  L+L  N L +       ++    P ++T L+  +NL              
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221

Query: 495 ----THKVLDMRMNNFNGK----ISQKFVNSCNLTNLNLNGNRLEGP-------LPLSLV 539
                   L++ +N  +G     +     +  +L  + L+ + ++         L  +  
Sbjct: 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281

Query: 540 NCHHLEVLDVGNNQIND 556
           N   + ++D    +I+ 
Sbjct: 282 NIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 51/333 (15%), Positives = 104/333 (31%), Gaps = 107/333 (32%)

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQL-----NFDSNLTHKVLDMRMNNFNGKISQKF-- 514
             +  LDLS N L         +  +L     N  +++T   L++  N+   K S +   
Sbjct: 22  HGVTSLDLSLNNLY------SISTVELIQAFANTPASVTS--LNLSGNSLGFKNSDELVQ 73

Query: 515 ---VNSCNLTNLNLNGNRL--EGPLPLS--LVNCH-HLEVLDVGNNQINDNFPNWL-EIL 565
                  N+T+LNL+GN L  +    L   L      + VLD+G N  +    +   +  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 566 PE----LQVLILRSNRFWGPIGD-------------NTTIVPFPRFRIIDLSHNEFTGVL 608
                 +  L LR N     +G                 +        ++L  N      
Sbjct: 134 SNLPASITSLNLRGND----LGIKSSDELIQILAAIPANV------NSLNLRGNNLA--- 180

Query: 609 PTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLS 668
                +  K +     +                    +T                ++DLS
Sbjct: 181 SKNCAELAKFLASIPAS--------------------VT----------------SLDLS 204

Query: 669 SNKFQ-GGIPEVVGKL----NLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSSN 719
           +N        E+        N +  L N+  N L G     +  L  +L  ++++ L  +
Sbjct: 205 ANLLGLKSYAELAYIFSSIPNHVVSL-NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 720 ML-------VGHIPTQLTSLKYLSVLNLSYNQF 745
           ++          +     +++ + +++ +  + 
Sbjct: 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 39/197 (19%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
           +     ++    +   EL ++  +   ++ +     +     L N+++L +  N+L    
Sbjct: 25  NLKKKSVT-DAVTQN-ELNSIDQIIANNSDI---KSVQGIQYLPNVRYLALGGNKL---H 76

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITA 463
            +       NL  L L+   +   P+ +   L  L+   L +N++   +   ++D  +T 
Sbjct: 77  DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD-KLTN 134

Query: 464 LYYLDLSNNFLTNIEYFPP------TNMTQLNFDSN----LTHKVLDMRMNNFNGKISQK 513
           L YL+L++N L ++   P       TN+T+L+   N    L   V D        K++Q 
Sbjct: 135 LTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQLQSLPEGVFD--------KLTQ- 182

Query: 514 FVNSCNLTNLNLNGNRL 530
                 L +L L  N+L
Sbjct: 183 ------LKDLRLYQNQL 193

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 44/183 (24%), Positives = 63/183 (34%), Gaps = 39/183 (21%)

Query: 348 SNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLK 407
           S  L+    ++   L  L  L L  N+L  T     F  L  L  L ++NN+L       
Sbjct: 44  STGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL------- 95

Query: 408 VNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYL 467
             +S P                 +   L QL    L  N++   + S ++D  +T L  L
Sbjct: 96  --ASLP---------------LGVFDHLTQLDKLYLGGNQLK-SLPSGVFD-RLTKLKEL 136

Query: 468 DLSNNFLTNIEYFPPTNMTQLNFDS--NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNL 525
            L+ N L +I    P       FD   NL    L +  N         F     L  + L
Sbjct: 137 RLNTNQLQSI----PAGA----FDKLTNLQT--LSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 526 NGN 528
            GN
Sbjct: 187 FGN 189

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 348 SNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLK 407
           +   +      +   ENL  L + + +     EL D   L  L+ L +  + L       
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 408 VNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH 449
                P L  L LS   +            LQ   LS N +H
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 12/111 (10%)

Query: 469 LSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNG 527
             +  L ++ + P   N+T+L  ++    + L+           +       L NL +  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------LRDLRGLGELRNLTIVK 65

Query: 528 NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
           + L    P +      L  L++  N +       ++ L  LQ L+L  N  
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	892
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.94
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.15
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.08
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.45
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.94

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.2e-91  Score=849.00  Aligned_cols=703  Identities=25%  Similarity=0.327  Sum_probs=616.3

Q ss_pred             CCCCCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCccccceEecCCCCeEEEEECCCCCCCCC-
Q 047519            1 CSAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGN-   79 (892)
Q Consensus         1 ~~~~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~-   79 (892)
                      |.++.+.++||+|||+||+++.++              . ++++|+.+++||+|+||+|+  +|||++|||++.++.|. 
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~--------------~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~   66 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDK--------------N-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGF   66 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCT--------------T-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEH
T ss_pred             CccccCCHHHHHHHHHHHhhCCCc--------------c-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCcc
Confidence            567778899999999999999755              2 78999988899999999998  58999999999999998 


Q ss_pred             --CCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCC--CCCcccCCCCceecCCcccCCc
Q 047519           80 --IPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPA--SIDLINVSRLSTNYLPIFAFSD  155 (892)
Q Consensus        80 --~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~~~L~~L~~L~Ls~~~~~~  155 (892)
                        +++  ++.++++|+.++++.+.+..  +|+.|+++++|++|||++|.+.|.+|.  .++  ++++|++|+|+++...+
T Consensus        67 ~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~  140 (768)
T 3rgz_A           67 SAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG--SCSGLKFLNVSSNTLDF  140 (768)
T ss_dssp             HHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG--GCTTCCEEECCSSEEEC
T ss_pred             CccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHh--CCCCCCEEECcCCccCC
Confidence              887  89999999999999998754  678999999999999999999999998  899  99999999999988788


Q ss_pred             chhhhh-hcccCCCCCCCEEecCCccCccccccc----CCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccccccc
Q 047519          156 CFQLDV-KTTFLHDDLEEEIYMTQLDGFKVAEKE----NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMK  230 (892)
Q Consensus       156 ~~p~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~----~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~  230 (892)
                      .+|..+ .    ++++|++|+|++|.+.+..+..    .++  ++|++|++++|  .+++..|                 
T Consensus       141 ~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~-----------------  195 (768)
T 3rgz_A          141 PGKVSGGL----KLNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGN--KISGDVD-----------------  195 (768)
T ss_dssp             CSSCCSCC----CCTTCSEEECCSSCCEEETHHHHHHTTCC--TTCCEEECCSS--EEESCCB-----------------
T ss_pred             cCCHHHhc----cCCCCCEEECCCCccCCcCChhhhhhccC--CCCCEEECCCC--cccccCC-----------------
Confidence            888765 6    8999999999999998877653    778  99999999999  8887755                 


Q ss_pred             ccccCCCCCEEEcccCCCCCcCCccccCCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCC
Q 047519          231 DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQS  307 (892)
Q Consensus       231 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  307 (892)
                       +..+++|++|++++|.+.+.+|. ++++++|++|+   +.+.+.+|. .+.++++|++|++++|.+.+.+|..  .+++
T Consensus       196 -~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~  270 (768)
T 3rgz_A          196 -VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL--PLKS  270 (768)
T ss_dssp             -CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTT
T ss_pred             -cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc--ccCC
Confidence             47899999999999999998887 99999999999   888889998 9999999999999999999988875  8999


Q ss_pred             CcEEecCccccccceeecc-chhhhhhccCC-CCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcC
Q 047519          308 TVVLSTTEAEYMAITKAVK-EAIWLQVFVRG-RRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFA  385 (892)
Q Consensus       308 L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~-l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  385 (892)
                      |++|+++   +|.+++.+| .+       .. +++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|...+.
T Consensus       271 L~~L~L~---~n~l~~~ip~~~-------~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~  340 (768)
T 3rgz_A          271 LQYLSLA---ENKFTGEIPDFL-------SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL  340 (768)
T ss_dssp             CCEEECC---SSEEEESCCCCS-------CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred             CCEEECc---CCccCCccCHHH-------HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence            9999999   999999999 66       55 499999999999999999999999999999999999999889966699


Q ss_pred             CCCCCCEEEcccCCCCCCccccCCC-CCC-CccEEEccCCCCC-CcchhhhC--CCCccEEEccCCCCCCCCchhhhhhC
Q 047519          386 KLKNLKWLFVSNNRLSLSTKLKVNS-SFP-NLFGLGLSACNIS-EFPDILRT--LHQLQWFNLSKNRIHGRISSWMWDLG  460 (892)
Q Consensus       386 ~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~-~L~~L~L~~n~l~-~lp~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~  460 (892)
                      .+++|++|++++|  .+.+.+|... .++ +|++|++++|.++ .+|..+..  +++|++|++++|.+++.+|..+..+ 
T Consensus       341 ~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-  417 (768)
T 3rgz_A          341 KMRGLKVLDLSFN--EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-  417 (768)
T ss_dssp             TCTTCCEEECCSS--EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-
T ss_pred             cCCCCCEEeCcCC--ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-
Confidence            9999999999999  6677777776 565 9999999999998 67777766  8899999999999999999999988 


Q ss_pred             CCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccC
Q 047519          461 ITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN  540 (892)
Q Consensus       461 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  540 (892)
                       ++|++|++++|++++..|..+..+.        +|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+.+
T Consensus       418 -~~L~~L~Ls~N~l~~~~p~~l~~l~--------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  488 (768)
T 3rgz_A          418 -SELVSLHLSFNYLSGTIPSSLGSLS--------KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN  488 (768)
T ss_dssp             -TTCCEEECCSSEEESCCCGGGGGCT--------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             -CCCCEEECcCCcccCcccHHHhcCC--------CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence             9999999999999999888777766        8999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhh
Q 047519          541 CHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM  620 (892)
Q Consensus       541 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~  620 (892)
                      +++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+  ..+++|++|++++|+++|.+|..++. ...+.
T Consensus       489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~  565 (768)
T 3rgz_A          489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKI  565 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGT-TTTCB
T ss_pred             CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhc-ccchh
Confidence            9999999999999999999999999999999999999999999887  89999999999999999999987543 22222


Q ss_pred             cccCCC-ccccccCCCCC--------------------------CCccceEEEEEccchhhHHHhhhhheeeecCCCcCC
Q 047519          621 HGNNNS-VEVDYMTPLNS--------------------------SNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ  673 (892)
Q Consensus       621 ~l~~~~-~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  673 (892)
                      ...... ....++.....                          ..........+++.....+..++.|+.|||++|+++
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence            222111 11111100000                          000000000111222222334688999999999999


Q ss_pred             CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC
Q 047519          674 GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS  753 (892)
Q Consensus       674 ~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  753 (892)
                      |.+|.++++++.|+.|+ |++|+++|.+|..|+++++|++|||++|+++|.+|..|..+++|++||+++|+++|.||.++
T Consensus       646 g~ip~~l~~l~~L~~L~-Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILN-LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             SCCCGGGGGCTTCCEEE-CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred             ccCCHHHhccccCCEEe-CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCccCCCCCCCCCCCCCCCCCCCC
Q 047519          754 QFNTFRNDSYVGNSGLCGFPLLESCNIDEA  783 (892)
Q Consensus       754 ~~~~~~~~~~~gN~~lc~~~~~~~c~~~~~  783 (892)
                      +|.+|...+|.|||++||.|+. .|.....
T Consensus       725 ~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          725 QFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             SGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             hhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            9999999999999999999987 8976543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8e-68  Score=644.82  Aligned_cols=600  Identities=22%  Similarity=0.225  Sum_probs=505.6

Q ss_pred             EEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCC--cCcCCCCCCeEeCCCCCCccccCCCC-CcccCCC
Q 047519           66 VIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISS--GFSQLRSLTLLNLSSSNFMGSIPASI-DLINVSR  142 (892)
Q Consensus        66 v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~~~L~~  142 (892)
                      +..++++.+++.. ++.  .+..+++|++|||++|.+.+. +|.  .++++++|++|+|++|.+.+.+|..+ +  ++++
T Consensus        79 L~~l~~~~~~~~~-l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~  152 (768)
T 3rgz_A           79 LESLFLSNSHING-SVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNS  152 (768)
T ss_dssp             CCEEECTTSCEEE-CCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC--CCTT
T ss_pred             ccccCCcCCCcCC-Cch--hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhc--cCCC
Confidence            3445555544332 334  799999999999999999986 787  89999999999999999999999876 7  9999


Q ss_pred             CceecCCcccCCcchhhh---hhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHh
Q 047519          143 LSTNYLPIFAFSDCFQLD---VKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKL  219 (892)
Q Consensus       143 L~~L~Ls~~~~~~~~p~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l  219 (892)
                      |++|+++++.+.+..|..   +.    ++++|++|++++|.+.+..+. ..+  ++|++|++++|  .+++.+|      
T Consensus       153 L~~L~Ls~n~l~~~~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~-~~l--~~L~~L~Ls~n--~l~~~~~------  217 (768)
T 3rgz_A          153 LEVLDLSANSISGANVVGWVLSD----GCGELKHLAISGNKISGDVDV-SRC--VNLEFLDVSSN--NFSTGIP------  217 (768)
T ss_dssp             CSEEECCSSCCEEETHHHHHHTT----CCTTCCEEECCSSEEESCCBC-TTC--TTCCEEECCSS--CCCSCCC------
T ss_pred             CCEEECCCCccCCcCChhhhhhc----cCCCCCEEECCCCcccccCCc-ccC--CcCCEEECcCC--cCCCCCc------
Confidence            999999998878887776   66    999999999999999876554 778  99999999999  8988777      


Q ss_pred             hhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCc
Q 047519          220 KTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAG  296 (892)
Q Consensus       220 ~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~  296 (892)
                                . ++++++|++|++++|.+.+.+|..++++++|++|+   |.+.+.+|. .  .+++|++|++++|.+++
T Consensus       218 ----------~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~--~l~~L~~L~L~~n~l~~  283 (768)
T 3rgz_A          218 ----------F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L--PLKSLQYLSLAENKFTG  283 (768)
T ss_dssp             ----------B-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C--CCTTCCEEECCSSEEEE
T ss_pred             ----------c-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c--ccCCCCEEECcCCccCC
Confidence                      5 89999999999999999999999999999999999   888888887 4  89999999999999999


Q ss_pred             CCCccccCC-CCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCcc-ccCCCCCCEEECcCC
Q 047519          297 GPINWKSTL-QSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSS-VYELENLILLRLPSN  373 (892)
Q Consensus       297 ~~p~~l~~l-~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n  373 (892)
                      .+|..+... ++|++|+++   +|.+.+.+| .+       +++++|++|++++|.+++.+|.. +..+++|++|++++|
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls---~n~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLS---GNHFYGAVPPFF-------GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECC---SSEEEECCCGGG-------GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred             ccCHHHHhhcCcCCEEECc---CCcCCCccchHH-------hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence            999988875 999999999   999999999 88       99999999999999999888876 999999999999999


Q ss_pred             cCCCccChhhcCCCC-CCCEEEcccCCCCCCccccCCC-C--CCCccEEEccCCCCC-CcchhhhCCCCccEEEccCCCC
Q 047519          374 RLSGTTELYDFAKLK-NLKWLFVSNNRLSLSTKLKVNS-S--FPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSKNRI  448 (892)
Q Consensus       374 ~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~-~--l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l  448 (892)
                      .+++.+| ..+..++ +|++|++++|  .+.+.++... .  +++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       354 ~l~~~~p-~~l~~l~~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          354 EFSGELP-ESLTNLSASLLTLDLSSN--NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             EEEECCC-TTHHHHTTTCSEEECCSS--EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             ccCcccc-HHHHhhhcCCcEEEccCC--CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            9998888 6777777 9999999999  6667666655 3  789999999999998 8899999999999999999999


Q ss_pred             CCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCC
Q 047519          449 HGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN  528 (892)
Q Consensus       449 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  528 (892)
                      ++.+|..+..+  ++|+.|++++|.+++.+|..+..++        +|++|++++|++++.+|..+..+++|++|++++|
T Consensus       431 ~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~--------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N  500 (768)
T 3rgz_A          431 SGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVK--------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN  500 (768)
T ss_dssp             ESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCT--------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred             cCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcCCC--------CceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence            99999999988  9999999999999998887776665        8999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCC---------------
Q 047519          529 RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR---------------  593 (892)
Q Consensus       529 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~---------------  593 (892)
                      ++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+  .....               
T Consensus       501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~--~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG--GTTTTCBCCSTTCSCEEEEE
T ss_pred             ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH--hcccchhhhhcccccccccc
Confidence            9999999999999999999999999999999999999999999999999998887643  11111               


Q ss_pred             -------------------------------ccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccc
Q 047519          594 -------------------------------FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYE  642 (892)
Q Consensus       594 -------------------------------L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~  642 (892)
                                                     ++.++++.|.+.|.+|.. +++++.|+.++++.|.+..           
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~-~~~l~~L~~LdLs~N~l~g-----------  646 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSG-----------  646 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS-CSSSBCCCEEECCSSCCBS-----------
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchh-hhccccccEEECcCCcccc-----------
Confidence                                           111122223333333322 2333333333333332110           


Q ss_pred             eEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCC
Q 047519          643 SIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLV  722 (892)
Q Consensus       643 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  722 (892)
                              .....+..++.|+.|||++|+++|.+|..++++++|+.|+ |++|+++|.+|..++++++|++|||++|+++
T Consensus       647 --------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld-Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          647 --------YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD-LSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             --------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE-CCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             --------cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE-CCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence                    0001112377899999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCccccCCCCCCCEEECCCCc-Ccc
Q 047519          723 GHIPTQLTSLKYLSVLNLSYNQ-FEG  747 (892)
Q Consensus       723 ~~ip~~l~~l~~L~~L~ls~N~-l~g  747 (892)
                      |.||.. ..+..+....+.+|+ +.|
T Consensus       718 g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          718 GPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             EECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             ccCCCc-hhhccCCHHHhcCCchhcC
Confidence            999974 344555666677886 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.3e-58  Score=551.62  Aligned_cols=573  Identities=17%  Similarity=0.155  Sum_probs=346.9

Q ss_pred             CCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhh-hhhcccCCC
Q 047519           90 PHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQL-DVKTTFLHD  168 (892)
Q Consensus        90 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~-~l~~~~~~l  168 (892)
                      +++++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..++  ++++|++|+++++.+. .+|. .++    ++
T Consensus        25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~-~l~~~~~~----~l   96 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQ--KLPMLKVLNLQHNELS-QLSDKTFA----FC   96 (680)
T ss_dssp             TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHH--HCTTCCEEECCSSCCC-CCCTTTTT----TC
T ss_pred             CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHh--cccCcCEEECCCCccC-ccChhhhc----cC
Confidence            3444455554444442 223344444555555554444444444444  4444444444444322 2222 233    44


Q ss_pred             CCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCC
Q 047519          169 DLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNR  247 (892)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~  247 (892)
                      ++|++|++++|.+.+..+.. +.+  ++|++|++++|  .+++..|                ..++++++|++|++++|.
T Consensus        97 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           97 TNLTELHLMSNSIQKIKNNPFVKQ--KNLITLDLSHN--GLSSTKL----------------GTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             TTCSEEECCSSCCCCCCSCTTTTC--TTCCEEECCSS--CCSCCCC----------------CSSSCCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCccCccChhHcccc--CCCCEEECCCC--cccccCc----------------hhhcccccCCEEEccCCc
Confidence            44455555444444333333 444  44455555444  4444433                344444445555554444


Q ss_pred             CCCcCCcccc--CCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccc---cCCCCCcEEecCccccc
Q 047519          248 TCGKTMDVGL--LFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWK---STLQSTVVLSTTEAEYM  319 (892)
Q Consensus       248 ~~~~~~~~l~--~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~l~~~~~n  319 (892)
                      +.+..+..+.  .+++|++|+   +.+.+..|. .+..+++|+.|++.++.+.+.....+   ...++|+.|+++   +|
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~---~n  232 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS---NS  232 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT---TS
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc---CC
Confidence            4433332221  223333333   233333333 45555555555555555443211111   023556666666   66


Q ss_pred             cceeecc-chhhhhhccCCCCC--cCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcc
Q 047519          320 AITKAVK-EAIWLQVFVRGRRH--YAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS  396 (892)
Q Consensus       320 ~l~~~~p-~l~~l~l~~~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  396 (892)
                      .+.+..| .+       ..++.  |++|++++|.+++..|..|+.+++|++|++++|.+++..+ ..|..+++|++|+++
T Consensus       233 ~l~~~~~~~~-------~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~  304 (680)
T 1ziw_A          233 QLSTTSNTTF-------LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLK  304 (680)
T ss_dssp             CCCEECTTTT-------GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECT
T ss_pred             cccccChhHh-------hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEecc
Confidence            6655555 44       44433  6666666666665555666666666666666666665444 556666666666666


Q ss_pred             cCCCCCCc-----cccC----CC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCC--chhhhhhCCCc
Q 047519          397 NNRLSLST-----KLKV----NS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRI--SSWMWDLGITA  463 (892)
Q Consensus       397 ~n~l~~~~-----~~~~----~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~~~  463 (892)
                      +|  ...+     .+|.    .+ .+++|++|++++|.++.+ |..+..+++|++|++++|.+....  ...+..+..++
T Consensus       305 ~~--~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~  382 (680)
T 1ziw_A          305 RS--FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP  382 (680)
T ss_dssp             TC--BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred             ch--hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence            55  2221     1111    22 567777777777777744 345777777777777777654321  22233332257


Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccc-ccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519          464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH  542 (892)
Q Consensus       464 L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  542 (892)
                      |+.|++++|++++..|..+..+.        +|+.|++++|.+.+.+| ..|..+++|++|++++|++++..+..+..++
T Consensus       383 L~~L~L~~n~l~~~~~~~~~~l~--------~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  454 (680)
T 1ziw_A          383 LHILNLTKNKISKIESDAFSWLG--------HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP  454 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCT--------TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT
T ss_pred             CceEECCCCCCCeEChhhhhCCC--------CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc
Confidence            78888888887777776666555        77788888888776555 5677778888888888887777777777888


Q ss_pred             CCcEEEccCCCCC--CCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhh
Q 047519          543 HLEVLDVGNNQIN--DNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMM  620 (892)
Q Consensus       543 ~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~  620 (892)
                      +|++|++++|.+.  +.+|..+..+++|++|++++|++++..+..+  ..+++|++|++++|++++..+..+.+      
T Consensus       455 ~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~------  526 (680)
T 1ziw_A          455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPG------  526 (680)
T ss_dssp             TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTTSTT------
T ss_pred             ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhhccC------
Confidence            8888888888776  4567777788888888888888876666555  67778888888888877542211100      


Q ss_pred             cccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCC
Q 047519          621 HGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD  700 (892)
Q Consensus       621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~  700 (892)
                                                    .+...+..+++|+.|+|++|+++...+..|.++++|+.|+ |++|++++.
T Consensus       527 ------------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~-Ls~N~l~~l  575 (680)
T 1ziw_A          527 ------------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID-LGLNNLNTL  575 (680)
T ss_dssp             ------------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCC
T ss_pred             ------------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE-CCCCCCCcC
Confidence                                          0000112267899999999999954445689999999998 999999977


Q ss_pred             cchhccCCCCCCeeeCCCCcCCCCCccccC-CCCCCCEEECCCCcCcccCCC
Q 047519          701 IPSLLRNLTEVESLDLSSNMLVGHIPTQLT-SLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       701 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      .+..|.++++|+.|+|++|++++..|..+. .+++|+.|++++|++.+.++.
T Consensus       576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            777889999999999999999988888787 788999999999999988775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-57  Score=548.09  Aligned_cols=585  Identities=17%  Similarity=0.169  Sum_probs=494.0

Q ss_pred             CeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCC
Q 047519           93 RKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEE  172 (892)
Q Consensus        93 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~  172 (892)
                      +.+|.+++.++.  +|..+.  ++|++|+|++|.+.+..|..++  ++++|++|+++++.+.+..|..++    ++++|+
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~   76 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQ----KLPMLK   76 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHH----HCTTCC
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHh----cccCcC
Confidence            456666666655  676665  7999999999999987777799  999999999999887887788888    999999


Q ss_pred             EEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCc
Q 047519          173 EIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGK  251 (892)
Q Consensus       173 ~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~  251 (892)
                      +|+|++|.+....+.. +.+  ++|++|++++|  .+++..|                ..++++++|++|++++|.+.+.
T Consensus        77 ~L~L~~n~l~~l~~~~~~~l--~~L~~L~L~~n--~l~~~~~----------------~~~~~l~~L~~L~Ls~n~l~~~  136 (680)
T 1ziw_A           77 VLNLQHNELSQLSDKTFAFC--TNLTELHLMSN--SIQKIKN----------------NPFVKQKNLITLDLSHNGLSST  136 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTC--TTCSEEECCSS--CCCCCCS----------------CTTTTCTTCCEEECCSSCCSCC
T ss_pred             EEECCCCccCccChhhhccC--CCCCEEECCCC--ccCccCh----------------hHccccCCCCEEECCCCccccc
Confidence            9999999998776655 889  99999999999  8887766                7899999999999999999999


Q ss_pred             CCccccCCCCcceec---ccceeecChhhhc--CCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc
Q 047519          252 TMDVGLLFEQDDTLG---QSVNGYVDSDYIG--DLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK  326 (892)
Q Consensus       252 ~~~~l~~l~~L~~L~---~~~~~~~p~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p  326 (892)
                      .|..++++++|++|+   |.+.+..+. .+.  .+++|++|++++|.+++..|..+..+++|+.|++.   ++.+.+...
T Consensus       137 ~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~---~~~l~~~~~  212 (680)
T 1ziw_A          137 KLGTQVQLENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN---NVQLGPSLT  212 (680)
T ss_dssp             CCCSSSCCTTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT---TCCCHHHHH
T ss_pred             CchhhcccccCCEEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc---ccccChhhH
Confidence            999999999999999   667665555 554  56899999999999999999999999999999999   887754333


Q ss_pred             -chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCC--CCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCC
Q 047519          327 -EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELEN--LILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS  403 (892)
Q Consensus       327 -~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  403 (892)
                       .+   .. ....++|++|++++|.+++..|..+..++.  |++|++++|.+++..+ ..|..+++|++|++++|  .+.
T Consensus       213 ~~~---~~-~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~  285 (680)
T 1ziw_A          213 EKL---CL-ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYN--NIQ  285 (680)
T ss_dssp             HHH---HH-HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSC--CBS
T ss_pred             HHH---HH-HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCC--ccC
Confidence             11   00 024589999999999999999999988865  9999999999997666 78999999999999999  666


Q ss_pred             ccccCCC-CCCCccEEEccCCCCC------Ccch----hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCC
Q 047519          404 TKLKVNS-SFPNLFGLGLSACNIS------EFPD----ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNN  472 (892)
Q Consensus       404 ~~~~~~~-~l~~L~~L~L~~n~l~------~lp~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n  472 (892)
                      +..+..+ .+++|+.|++++|...      .+|.    .+..+++|++|++++|.+.+..+..+..+  ++|++|++++|
T Consensus       286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n  363 (680)
T 1ziw_A          286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--INLKYLSLSNS  363 (680)
T ss_dssp             EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC--TTCCEEECTTC
T ss_pred             ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccc--cCCcEEECCCC
Confidence            7666666 8999999999987543      3443    68889999999999999999888888888  99999999999


Q ss_pred             CCCCC--CCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC-ccccCCCCCcEEEc
Q 047519          473 FLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP-LSLVNCHHLEVLDV  549 (892)
Q Consensus       473 ~l~~~--~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L  549 (892)
                      .+...  ....+..+      ..+.|+.|++++|++++..|..|..+++|+.|++++|.+++.+| ..+.++++|++|++
T Consensus       364 ~~~~~~l~~~~f~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          364 FTSLRTLTNETFVSL------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             BSCCCEECTTTTGGG------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             chhhhhcchhhhccc------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            86432  22222221      11378999999999999999999999999999999999987666 68999999999999


Q ss_pred             cCCCCCCCcchhccCCCCCCEEEccCCcCC--CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCc
Q 047519          550 GNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV  627 (892)
Q Consensus       550 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~  627 (892)
                      ++|++.+..+..|..+++|+.|++++|.+.  +.+|..+  ..+++|++|++++|++++..|.. +.+            
T Consensus       438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~i~~~~-~~~------------  502 (680)
T 1ziw_A          438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNNNIANINDDM-LEG------------  502 (680)
T ss_dssp             CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSSCCCCCCTTT-TTT------------
T ss_pred             CCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCCCCCcCChhh-hcc------------
Confidence            999999988899999999999999999987  5567666  88999999999999999655533 221            


Q ss_pred             cccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCC--------hhhhcCccccccccccCCCCCCC
Q 047519          628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI--------PEVVGKLNLLKGLNNISHNNLTG  699 (892)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~--------p~~~~~l~~L~~L~~Ls~N~l~~  699 (892)
                                                     +++|+.|++++|++++..        +..++++++|+.|+ |++|+++.
T Consensus       503 -------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~-L~~N~l~~  550 (680)
T 1ziw_A          503 -------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN-LESNGFDE  550 (680)
T ss_dssp             -------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE-CCSSCCCC
T ss_pred             -------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE-CCCCCCCC
Confidence                                           677899999999998532        22478999999999 99999995


Q ss_pred             CcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC--CCCcccCCccCCCCCCCCCC
Q 047519          700 DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS--QFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       700 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~--~~~~~~~~~~~gN~~lc~~~  773 (892)
                      ..+..|+++++|+.|||++|++++..+..|..+++|+.|++++|++++..|...  .+.++....+.|||+.|+|+
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            555679999999999999999998777788999999999999999998776532  35567778889999999865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-57  Score=558.48  Aligned_cols=566  Identities=21%  Similarity=0.181  Sum_probs=380.1

Q ss_pred             ECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCcccc-CCCCCcccCCCCceecC
Q 047519           70 DLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSI-PASIDLINVSRLSTNYL  148 (892)
Q Consensus        70 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~~~L~~L~~L~L  148 (892)
                      |.++.+++. +|   .  -.++|++|||++|.+++. .|..|+++++|++|+|++|.+.+.+ |..|+  ++++|++|+|
T Consensus        10 dcs~~~L~~-vP---~--lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~L   80 (844)
T 3j0a_A           10 FYRFCNLTQ-VP---Q--VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDL   80 (844)
T ss_dssp             EESCCCSSC-CC---S--SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEEC
T ss_pred             EccCCCCCC-CC---C--CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEEC
Confidence            444555553 33   2  347889999999998875 6788899999999999998777676 66777  7777777777


Q ss_pred             CcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc---CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccc
Q 047519          149 PIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE---NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQ  225 (892)
Q Consensus       149 s~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~---~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~  225 (892)
                      ++|.+.+..|..+.    ++++|++|+|++|.+.+..+..   ..+  ++|++|+|++|  .+++..+.           
T Consensus        81 s~N~l~~~~p~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~L--~~L~~L~Ls~N--~l~~~~~~-----------  141 (844)
T 3j0a_A           81 GSSKIYFLHPDAFQ----GLFHLFELRLYFCGLSDAVLKDGYFRNL--KALTRLDLSKN--QIRSLYLH-----------  141 (844)
T ss_dssp             TTCCCCEECTTSSC----SCSSCCCEECTTCCCSSCCSTTCCCSSC--SSCCEEEEESC--CCCCCCCC-----------
T ss_pred             CCCcCcccCHhHcc----CCcccCEeeCcCCCCCcccccCcccccc--CCCCEEECCCC--cccccccc-----------
Confidence            66665555566665    6666666666666665543321   455  55555555555  55443320           


Q ss_pred             cccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCC--CCCcEEEccCCCCCcCCCcccc
Q 047519          226 EFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDL--DKRRSITGYVFNFAGGPINWKS  303 (892)
Q Consensus       226 ~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~  303 (892)
                          ..++++++|++|++++|.+.+..+.                      .+..+  ++|+.|++++|.+.+..|..++
T Consensus       142 ----~~~~~L~~L~~L~Ls~N~i~~~~~~----------------------~l~~l~~~~L~~L~L~~n~l~~~~~~~~~  195 (844)
T 3j0a_A          142 ----PSFGKLNSLKSIDFSSNQIFLVCEH----------------------ELEPLQGKTLSFFSLAANSLYSRVSVDWG  195 (844)
T ss_dssp             ----GGGGTCSSCCEEEEESSCCCCCCSG----------------------GGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred             ----hhHhhCCCCCEEECCCCcCCeeCHH----------------------HcccccCCccceEECCCCccccccccchh
Confidence                2345555555555555544332221                      23322  4555555555555555554444


Q ss_pred             CCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCC---CCCCEEECcC--------
Q 047519          304 TLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYEL---ENLILLRLPS--------  372 (892)
Q Consensus       304 ~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~--------  372 (892)
                      .+++                    .       .....|++|++++|.+++..|..+...   ++++.|.++.        
T Consensus       196 ~~~~--------------------~-------~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~  248 (844)
T 3j0a_A          196 KCMN--------------------P-------FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG  248 (844)
T ss_dssp             SSSC--------------------T-------TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred             hcCC--------------------c-------cccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence            4333                    0       000124444444554444444433321   3444454442        


Q ss_pred             -CcCCCccChhhcCCC--CCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCC
Q 047519          373 -NRLSGTTELYDFAKL--KNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNR  447 (892)
Q Consensus       373 -n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~  447 (892)
                       +.+.+... ..|..+  ++|+.|++++|  .+.+..+..+ .+++|+.|++++|+++.+ |..+..+++|++|++++|.
T Consensus       249 ~~~l~~~~~-~~f~~l~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          249 FHNIKDPDQ-NTFAGLARSSVRHLDLSHG--FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             CSSSTTGGG-TTTTTTTTSCCCEEECTTC--CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             ccccCCCCh-hhhhccccCCccEEECCCC--cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence             22222222 334443  56777777777  4445445444 677788888888877744 5677888888888888888


Q ss_pred             CCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccC
Q 047519          448 IHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNG  527 (892)
Q Consensus       448 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  527 (892)
                      +.+..|..+..+  ++|+.|++++|.+.+..+..+..+.        +|++|++++|.+++.     ..+++|+.|++++
T Consensus       326 l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~--------~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~  390 (844)
T 3j0a_A          326 LGELYSSNFYGL--PKVAYIDLQKNHIAIIQDQTFKFLE--------KLQTLDLRDNALTTI-----HFIPSIPDIFLSG  390 (844)
T ss_dssp             CSCCCSCSCSSC--TTCCEEECCSCCCCCCCSSCSCSCC--------CCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred             CCccCHHHhcCC--CCCCEEECCCCCCCccChhhhcCCC--------CCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence            887777777777  8888888888888877776666665        888888888888742     2377899999999


Q ss_pred             CCCCCCCCccccCCCCCcEEEccCCCCCCC-cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC
Q 047519          528 NRLEGPLPLSLVNCHHLEVLDVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG  606 (892)
Q Consensus       528 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  606 (892)
                      |+++ .+|..   ..+++.|++++|++++. .+..+..+++|++|++++|++++..+... +..+++|+.|++++|.+++
T Consensus       391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~  465 (844)
T 3j0a_A          391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQL  465 (844)
T ss_dssp             CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSS
T ss_pred             CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCcccc
Confidence            9998 55543   46789999999999874 23445689999999999999976554322 3567899999999999975


Q ss_pred             cCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccc
Q 047519          607 VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLL  686 (892)
Q Consensus       607 ~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L  686 (892)
                      ..+.....                                       ..+..+++|+.|+|++|++++..|..+.++++|
T Consensus       466 ~~~~~~~~---------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          466 AWETELCW---------------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             SCCSCCCS---------------------------------------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccccccch---------------------------------------hhhcCcccccEEECCCCcccccChhHccchhhh
Confidence            43321100                                       001116789999999999999999999999999


Q ss_pred             ccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCCCCcccCCccCCC
Q 047519          687 KGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGN  766 (892)
Q Consensus       687 ~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN  766 (892)
                      +.|+ |++|+|++..|..+.  ++|+.|||++|++++.+|..|.   +|+.|++++|++.+.++..    .|......+|
T Consensus       507 ~~L~-Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~  576 (844)
T 3j0a_A          507 RGLS-LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTN  576 (844)
T ss_dssp             SEEE-EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTT
T ss_pred             heeE-CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcC
Confidence            9998 999999987777776  8999999999999999998765   7889999999999877642    3322223467


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC
Q 047519          767 SGLCGFPLLESCNIDEAPEPVG  788 (892)
Q Consensus       767 ~~lc~~~~~~~c~~~~~~~~~~  788 (892)
                      ..+||.|....|..|+...+.+
T Consensus       577 ~~~~~~~~~~~C~~p~~~~g~~  598 (844)
T 3j0a_A          577 VTIAGPPADIYCVYPDSFSGVS  598 (844)
T ss_dssp             TTTCCCGGGCCCSSCSSSCSCC
T ss_pred             cccccccccCccCCchhhCCCc
Confidence            7788888888898776655444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.3e-53  Score=503.51  Aligned_cols=532  Identities=18%  Similarity=0.139  Sum_probs=380.4

Q ss_pred             ECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCC
Q 047519           70 DLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLP  149 (892)
Q Consensus        70 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls  149 (892)
                      +.++.+++ .+|.  .+.  +++++|||++|.+++. .|..|+++++|++|+|++|.+.+..|..|+  ++++|++|+++
T Consensus        18 ~c~~~~l~-~iP~--~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls   89 (606)
T 3t6q_A           18 NCENLGLN-EIPG--TLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQ--SQHRLDTLVLT   89 (606)
T ss_dssp             ECTTSCCS-SCCT--TSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTT--TCTTCCEEECT
T ss_pred             ECCCCCcc-cCcC--CCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhcc--CccccCeeeCC
Confidence            34444444 4444  343  3789999999999985 688999999999999999999988888899  77777777777


Q ss_pred             cccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccccc
Q 047519          150 IFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFE  228 (892)
Q Consensus       150 ~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p  228 (892)
                      ++...+..|..++    ++++|++|++++|.+.+..+.. ..+  ++|++|++++|  .+++..+               
T Consensus        90 ~n~l~~~~~~~~~----~l~~L~~L~L~~n~i~~l~~~~~~~l--~~L~~L~L~~n--~l~~~~~---------------  146 (606)
T 3t6q_A           90 ANPLIFMAETALS----GPKALKHLFFIQTGISSIDFIPLHNQ--KTLESLYLGSN--HISSIKL---------------  146 (606)
T ss_dssp             TCCCSEECTTTTS----SCTTCCEEECTTSCCSCGGGSCCTTC--TTCCEEECCSS--CCCCCCC---------------
T ss_pred             CCcccccChhhhc----ccccccEeeccccCcccCCcchhccC--CcccEEECCCC--cccccCc---------------
Confidence            7765665566666    7777777777777666554444 556  66666666666  5554222               


Q ss_pred             ccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCc--EEEccCCCCCcCCCccccCCC
Q 047519          229 MKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRR--SITGYVFNFAGGPINWKSTLQ  306 (892)
Q Consensus       229 ~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~  306 (892)
                       +.+..+++|++|++++|.+.+                     ..|. .++.+++|+  +|++++|.+.+..|..+.. .
T Consensus       147 -~~~~~l~~L~~L~L~~n~l~~---------------------~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~  202 (606)
T 3t6q_A          147 -PKGFPTEKLKVLDFQNNAIHY---------------------LSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-A  202 (606)
T ss_dssp             -CTTCCCTTCCEEECCSSCCCE---------------------ECHH-HHHTTTTCCSEEEECTTCCCCEECTTTTTT-C
T ss_pred             -ccccCCcccCEEEcccCcccc---------------------cChh-hhhhhcccceeEEecCCCccCccChhHhhh-c
Confidence             223335555555555553322                     2222 455555555  5566666665544443332 4


Q ss_pred             CCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCC----ccChh
Q 047519          307 STVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSG----TTELY  382 (892)
Q Consensus       307 ~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~~~~  382 (892)
                      +|+.|+++   +|.   .                              ++..+..+.+++...+....+.+    .++..
T Consensus       203 ~L~~L~l~---~~~---~------------------------------~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~  246 (606)
T 3t6q_A          203 VFQSLNFG---GTQ---N------------------------------LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA  246 (606)
T ss_dssp             EEEEEECT---TCS---C------------------------------HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred             cccccccC---Cch---h------------------------------HHHHhhhccccchhheechhhccccccccChh
Confidence            55555555   443   1                              12222222222221111111100    11112


Q ss_pred             hcCCCC--CCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhh
Q 047519          383 DFAKLK--NLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL  459 (892)
Q Consensus       383 ~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  459 (892)
                      .+..+.  +|++|++++|  .+.+..+..+ .+++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..+
T Consensus       247 ~~~~l~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          247 VFEGLCEMSVESINLQKH--YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             GGGGGGGSEEEEEECTTC--CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             HhchhhcCceeEEEeecC--ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            222222  5666666666  3334333333 5666777777777777777777788888888888888887767777777


Q ss_pred             CCCcccEEEccCCCCCCCCCC-CCCCCCeeecCCCCcccEEECCCCccCccc--cccccCCCCCCEEEccCCCCCCCCCc
Q 047519          460 GITALYYLDLSNNFLTNIEYF-PPTNMTQLNFDSNLTHKVLDMRMNNFNGKI--SQKFVNSCNLTNLNLNGNRLEGPLPL  536 (892)
Q Consensus       460 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~  536 (892)
                        ++|++|++++|.+.+..+. .+..+.        +|++|++++|.+.+..  +..+..+++|++|++++|++++..|.
T Consensus       325 --~~L~~L~l~~n~~~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  394 (606)
T 3t6q_A          325 --PSLTHLSIKGNTKRLELGTGCLENLE--------NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE  394 (606)
T ss_dssp             --TTCSEEECCSCSSCCBCCSSTTTTCT--------TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred             --CcCCEEECCCCCcccccchhhhhccC--------cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence              8888888888887755443 355554        8888888888888765  67888999999999999999988888


Q ss_pred             cccCCCCCcEEEccCCCCCCCcch-hccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC-Cc-chh
Q 047519          537 SLVNCHHLEVLDVGNNQINDNFPN-WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL-PT-GYL  613 (892)
Q Consensus       537 ~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~-~~~  613 (892)
                      .+..+++|++|++++|++.+..|. .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|++++.. |. ..+
T Consensus       395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEECCCCCCCccccccchhh
Confidence            999999999999999999887654 48899999999999999988888777  88999999999999998632 21 111


Q ss_pred             hhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccC
Q 047519          614 DNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNIS  693 (892)
Q Consensus       614 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls  693 (892)
                                                                 ..+++|+.|++++|++++..|..++++++|+.|+ |+
T Consensus       473 -------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-Ls  508 (606)
T 3t6q_A          473 -------------------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD-LS  508 (606)
T ss_dssp             -------------------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CC
T ss_pred             -------------------------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEE-CC
Confidence                                                       1267899999999999999999999999999999 99


Q ss_pred             CCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519          694 HNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       694 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      +|++++.+|..|.++++| .|+|++|++++..|..+..+++|+.|++++|++++.++.
T Consensus       509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            999999999999999999 999999999999999999999999999999999987764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-51  Score=489.95  Aligned_cols=520  Identities=18%  Similarity=0.184  Sum_probs=399.6

Q ss_pred             CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519           64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL  143 (892)
Q Consensus        64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L  143 (892)
                      ..++.|+|+++.+++..+.  ++..+++|++|+|++|.+.+. .|..|+++++|++|+|++|.+.+..|..++  ++++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALS--GPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTS--SCTTC
T ss_pred             CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhc--ccccc
Confidence            4689999999999987676  899999999999999999886 788999999999999999999988899999  99999


Q ss_pred             ceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccc-cccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhc
Q 047519          144 STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVA-EKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQ  222 (892)
Q Consensus       144 ~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~  222 (892)
                      ++|+++++.+.+.-|..+.    ++++|++|++++|.+.+.. +....+  ++|++|++++|  .+++..|         
T Consensus       108 ~~L~L~~n~i~~l~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n--~l~~~~~---------  170 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLH----NQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNN--AIHYLSK---------  170 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCT----TCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSS--CCCEECH---------
T ss_pred             cEeeccccCcccCCcchhc----cCCcccEEECCCCcccccCcccccCC--cccCEEEcccC--cccccCh---------
Confidence            9999999886665566777    9999999999999998854 444558  99999999999  9988777         


Q ss_pred             ccccccccccccCCCCC--EEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCc
Q 047519          223 LNQEFEMKDLGEAKKIL--GMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN  300 (892)
Q Consensus       223 ~~~~~p~~~l~~l~~L~--~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~  300 (892)
                             ..++.+++|+  +|++++|.+.+..|                       ......+|++|++++|.   .++.
T Consensus       171 -------~~~~~l~~L~~l~L~l~~n~l~~~~~-----------------------~~~~~~~L~~L~l~~~~---~~~~  217 (606)
T 3t6q_A          171 -------EDMSSLQQATNLSLNLNGNDIAGIEP-----------------------GAFDSAVFQSLNFGGTQ---NLLV  217 (606)
T ss_dssp             -------HHHHTTTTCCSEEEECTTCCCCEECT-----------------------TTTTTCEEEEEECTTCS---CHHH
T ss_pred             -------hhhhhhcccceeEEecCCCccCccCh-----------------------hHhhhccccccccCCch---hHHH
Confidence                   6788888999  89999997665433                       23344689999999986   3445


Q ss_pred             cccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCC--CCCEEECcCCcCCCc
Q 047519          301 WKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELE--NLILLRLPSNRLSGT  378 (892)
Q Consensus       301 ~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~  378 (892)
                      .+..+.++....+.   ..                 .+..+...++.        +..+..+.  +|++|++++|.+++.
T Consensus       218 ~~~~l~~~~l~~l~---~~-----------------~~~~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~  269 (606)
T 3t6q_A          218 IFKGLKNSTIQSLW---LG-----------------TFEDMDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNI  269 (606)
T ss_dssp             HHHHTTTCEEEEEE---CC-----------------CCTTSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred             Hhhhccccchhhee---ch-----------------hhccccccccC--------hhHhchhhcCceeEEEeecCccCcc
Confidence            55555554444333   11                 11111111111        11111111  455555555555533


Q ss_pred             cChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCch-h
Q 047519          379 TELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISS-W  455 (892)
Q Consensus       379 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~-~  455 (892)
                      .+ ..|..+++|++|++++|++  . .+|... .+++|++|++++|.++.+ |..+..+++|++|++++|.+.+.+|. .
T Consensus       270 ~~-~~~~~l~~L~~L~l~~n~l--~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          270 SS-NTFHCFSGLQELDLTATHL--S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             CT-TTTTTCTTCSEEECTTSCC--S-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred             CH-HHhccccCCCEEeccCCcc--C-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence            33 4455555555555555522  2 233333 556666666666666644 45677788888888888887766554 3


Q ss_pred             hhhhCCCcccEEEccCCCCCCCC--CCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC
Q 047519          456 MWDLGITALYYLDLSNNFLTNIE--YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP  533 (892)
Q Consensus       456 ~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  533 (892)
                      +..+  ++|++|++++|.+++..  +..+..+.        +|++|++++|.+.+..|..+..+++|++|++++|++++.
T Consensus       346 ~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          346 LENL--ENLRELDLSHDDIETSDCCNLQLRNLS--------HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             TTTC--TTCCEEECCSSCCCEEEESTTTTTTCT--------TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             hhcc--CcCCEEECCCCccccccCcchhcccCC--------CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            6666  88888888888887765  44555554        888999999998888888899999999999999999877


Q ss_pred             CCc-cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC-CCCCCCCcCCCCccEEEcCCCCCcCcCCcc
Q 047519          534 LPL-SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGDNTTIVPFPRFRIIDLSHNEFTGVLPTG  611 (892)
Q Consensus       534 ~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  611 (892)
                      .|. .+..+++|++|++++|++++..|..+..+++|++|++++|++++. ++....+..+++|++|++++|++++..|..
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence            654 488999999999999999998889999999999999999999763 233233488999999999999999777754


Q ss_pred             hhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccc
Q 047519          612 YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN  691 (892)
Q Consensus       612 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~  691 (892)
                      + .+                                           ++.|+.|||++|++++.+|..+.+++.| .|+ 
T Consensus       496 ~-~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~-  529 (606)
T 3t6q_A          496 F-TS-------------------------------------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN-  529 (606)
T ss_dssp             T-TT-------------------------------------------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE-
T ss_pred             h-cc-------------------------------------------ccCCCEEECCCCccCcCChhHhCccccc-EEE-
Confidence            3 21                                           6789999999999999999999999999 998 


Q ss_pred             cCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCc
Q 047519          692 ISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP  726 (892)
Q Consensus       692 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  726 (892)
                      +++|++++.+|..++.+++|+.|++++|.+.+..+
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999999998665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.1e-52  Score=492.57  Aligned_cols=529  Identities=17%  Similarity=0.127  Sum_probs=435.8

Q ss_pred             EECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecC
Q 047519           69 LDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYL  148 (892)
Q Consensus        69 L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~L  148 (892)
                      ++.++.+++ .+|.  .+.  ++|++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..|+            
T Consensus        16 ~~c~~~~l~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~------------   77 (606)
T 3vq2_A           16 YQCMDQKLS-KVPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWH------------   77 (606)
T ss_dssp             EECTTSCCS-SCCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT------------
T ss_pred             eEccCCCcc-cCCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhh------------
Confidence            455666666 4554  333  7889999999998875 556888999999999999988876676666            


Q ss_pred             CcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccc
Q 047519          149 PIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEF  227 (892)
Q Consensus       149 s~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~  227 (892)
                                        ++++|++|+|++|.+.+..|.. +++  ++|++|++++|  .+++..|              
T Consensus        78 ------------------~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~n--~l~~~~~--------------  121 (606)
T 3vq2_A           78 ------------------GLHHLSNLILTGNPIQSFSPGSFSGL--TSLENLVAVET--KLASLES--------------  121 (606)
T ss_dssp             ------------------TCTTCCEEECTTCCCCCCCTTSSTTC--TTCCEEECTTS--CCCCSSS--------------
T ss_pred             ------------------chhhcCEeECCCCcccccChhhcCCc--ccCCEEEccCC--ccccccc--------------
Confidence                              7888888888888888887777 888  99999999999  8877766              


Q ss_pred             cccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCC
Q 047519          228 EMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQS  307 (892)
Q Consensus       228 p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  307 (892)
                        ..++++++|++|++++|.+.+                    ..+|. .++++++|++|++++|.+++..|..++.+++
T Consensus       122 --~~~~~l~~L~~L~L~~n~l~~--------------------~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  178 (606)
T 3vq2_A          122 --FPIGQLITLKKLNVAHNFIHS--------------------CKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQFLRE  178 (606)
T ss_dssp             --SCCTTCTTCCEEECCSSCCCC--------------------CCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred             --cccCCCCCCCEEeCCCCcccc--------------------eechH-hHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence              678889999999999986543                    13456 8889999999999999999888887777665


Q ss_pred             Cc----EEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCC-cCCCccccCCCCCCEEECcCCcCCCc----
Q 047519          308 TV----VLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLS-GSIPSSVYELENLILLRLPSNRLSGT----  378 (892)
Q Consensus       308 L~----~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----  378 (892)
                      |+    +|+++   +|.+.+..+..       ....+|++|++++|.++ +..|..+.+++.|+.+++..+.+.+.    
T Consensus       179 L~~~l~~L~l~---~n~l~~~~~~~-------~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          179 NPQVNLSLDMS---LNPIDFIQDQA-------FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             CTTCCCEEECT---TCCCCEECTTT-------TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             cccccceeecc---CCCcceeCccc-------ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence            54    89999   99998766643       34448999999999987 46778889999999998866554321    


Q ss_pred             -cChhhcCCCC--CCCEEEc-ccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCch
Q 047519          379 -TELYDFAKLK--NLKWLFV-SNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISS  454 (892)
Q Consensus       379 -~~~~~~~~l~--~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~  454 (892)
                       ++...+..+.  .++.+++ ..|  .+.+..+....+++|+.|++++|.++.+| .+..+++|++|++++|.+ +.+|.
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~  324 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTN--DFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT  324 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCT--TCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred             ccChHHhhhhhhccHhheeccccc--cccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc
Confidence             1112333333  4566777 556  56677776448999999999999999998 788999999999999999 57784


Q ss_pred             hhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc--ccccccCCCCCCEEEccCCCCCC
Q 047519          455 WMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK--ISQKFVNSCNLTNLNLNGNRLEG  532 (892)
Q Consensus       455 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~  532 (892)
                      .  .+  ++|+.|++++|...+..  .+..+        ++|++|++++|.+++.  .|..+..+++|++|++++|.+++
T Consensus       325 ~--~l--~~L~~L~l~~n~~~~~~--~~~~l--------~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  390 (606)
T 3vq2_A          325 L--DL--PFLKSLTLTMNKGSISF--KKVAL--------PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII  390 (606)
T ss_dssp             C--CC--SSCCEEEEESCSSCEEC--CCCCC--------TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE
T ss_pred             C--CC--CccceeeccCCcCccch--hhccC--------CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc
Confidence            4  55  99999999999655433  23333        4899999999999876  37888999999999999999984


Q ss_pred             CCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc-CCc
Q 047519          533 PLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV-LPT  610 (892)
Q Consensus       533 ~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~  610 (892)
                       +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+  ..+++|++|++++|++++. +|.
T Consensus       391 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             -ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECS
T ss_pred             -chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHH
Confidence             66889999999999999999999877 688999999999999999999888877  8899999999999999874 453


Q ss_pred             chhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccccccc
Q 047519          611 GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  690 (892)
Q Consensus       611 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~  690 (892)
                      .+ ++                                           +++|+.|++++|++++..|..++++++|+.|+
T Consensus       468 ~~-~~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          468 VF-AN-------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             CC-TT-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             hh-cc-------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            32 21                                           67899999999999999999999999999999


Q ss_pred             ccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC-CCCEEECCCCcCcccCCC
Q 047519          691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       691 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~iP~  751 (892)
                       +++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+.+|.
T Consensus       504 -Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          504 -MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             -CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             -CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence             9999999999999999999999999999999 7888899987 599999999999988775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-52  Score=499.62  Aligned_cols=509  Identities=15%  Similarity=0.156  Sum_probs=334.6

Q ss_pred             CCCHHHHHHHHHhhhcCccCCCCCCCccchhc-ccCCcCCCCCCCCCCccc---cceEecCCCCeEEEEECCCCCCCCCC
Q 047519            5 LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQ-QSRPKMMSWKEDADCCSW---DGVTCDTVAGHVIGLDLSCSWLHGNI   80 (892)
Q Consensus         5 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~-~~~~~l~~w~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~g~~   80 (892)
                      .....|++||.+||+++..+       .|.+. ..++...+|..+.+||.|   +||+|+.. |||++|+|++++++|.+
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~-------~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~l   97 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGK-------NWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRV   97 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGG-------GCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEE
T ss_pred             hhHHHHHHHHHHHHHHcCCC-------CcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcC
Confidence            34457999999999998654       13221 233456799988999999   99999875 89999999999999999


Q ss_pred             CCCCCccCCCCCCeEecCCCCCCCC-----------CCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCC
Q 047519           81 PSNSSLFFLPHIRKLNLAFNDFNYS-----------EISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLP  149 (892)
Q Consensus        81 ~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls  149 (892)
                      |+  +++++++|++|||++|.+...           .+|...  +.+|| ++++++.+.+.+|..++. .+.++..+++.
T Consensus        98 p~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~-~~~~l~~~~l~  171 (636)
T 4eco_A           98 PD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSD-LIKDCINSDPQ  171 (636)
T ss_dssp             CG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCH-HHHHHHHHCTT
T ss_pred             Ch--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHH-HHHHHhhcCcc
Confidence            98  999999999999999976211           134333  56677 888888888888776651 12233333332


Q ss_pred             cccCCcchhhhhhcccCCCCCCCEEecC--CccCccccccc-CCCCCCcccEEEccCCCCcCccC---------------
Q 047519          150 IFAFSDCFQLDVKTTFLHDDLEEEIYMT--QLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASK---------------  211 (892)
Q Consensus       150 ~~~~~~~~p~~l~~~~~~l~~L~~L~L~--~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~---------------  211 (892)
                      .....      ..    ....++.+.+.  .|.+++ +|.. +++  ++|++|+|++|  .+++.               
T Consensus       172 ~~~~~------~~----~~~~l~~l~l~~~~n~l~~-ip~~l~~l--~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~~~  236 (636)
T 4eco_A          172 QKSIK------KS----SRITLKDTQIGQLSNNITF-VSKAVMRL--TKLRQFYMGNS--PFVAENICEAWENENSEYAQ  236 (636)
T ss_dssp             SCCCC------CC----CCCCCCTTTTTCCSCEEEE-ECGGGGGC--TTCCEEEEESC--CCCGGGBSSSCSCTTSHHHH
T ss_pred             ccccc------cc----cccchhhhhhccccCCCcc-CCHHHhcc--cCCCEEECcCC--ccccccccccccccccchhc
Confidence            10000      00    11122222222  234444 4444 555  55555555555  55553               


Q ss_pred             --ChhHHHHhhhcccccccccccc--cCCCCCEEEcccCCCCCcCCccccCCCCcceec---cc-cee-ecChhhhcCC-
Q 047519          212 --SKDEIEKLKTQLNQEFEMKDLG--EAKKILGMEICRNRTCGKTMDVGLLFEQDDTLG---QS-VNG-YVDSDYIGDL-  281 (892)
Q Consensus       212 --~p~~i~~l~~~~~~~~p~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~---~~-~~~-~~p~~~l~~l-  281 (892)
                        +|                ..++  ++++|++|++++|.+.+.+|..++++++|++|+   |. +.| .+|. .++.+ 
T Consensus       237 ~~ip----------------~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~  299 (636)
T 4eco_A          237 QYKT----------------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALA  299 (636)
T ss_dssp             HHTT----------------SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHH
T ss_pred             ccCc----------------hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhh
Confidence              44                5666  666777777776666665555555555555554   33 555 5555 55554 


Q ss_pred             -----CCCcEEEccCCCCCcCCCc--cccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcC
Q 047519          282 -----DKRRSITGYVFNFAGGPIN--WKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGS  354 (892)
Q Consensus       282 -----~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~  354 (892)
                           ++|++|++++|.++ .+|.  .++++++|++|+++   +|.+.|.+|.+       ..+++|++|++++|.++ .
T Consensus       300 ~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~---~N~l~g~ip~~-------~~l~~L~~L~L~~N~l~-~  367 (636)
T 4eco_A          300 DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL---YNQLEGKLPAF-------GSEIKLASLNLAYNQIT-E  367 (636)
T ss_dssp             HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC---SCCCEEECCCC-------EEEEEESEEECCSSEEE-E
T ss_pred             ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc---CCcCccchhhh-------CCCCCCCEEECCCCccc-c
Confidence                 77777777777777 6776  77777777777777   77777777766       66677777777777776 6


Q ss_pred             CCccccCCCC-CCEEECcCCcCCCccChhhcCCCC--CCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchh
Q 047519          355 IPSSVYELEN-LILLRLPSNRLSGTTELYDFAKLK--NLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDI  431 (892)
Q Consensus       355 ~p~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~  431 (892)
                      +|..+..+++ |++|++++|.++ .+| ..+..++  +|++|++++|  .+.+..                      |..
T Consensus       368 lp~~l~~l~~~L~~L~Ls~N~l~-~lp-~~~~~~~l~~L~~L~Ls~N--~l~~~~----------------------p~~  421 (636)
T 4eco_A          368 IPANFCGFTEQVENLSFAHNKLK-YIP-NIFDAKSVSVMSAIDFSYN--EIGSVD----------------------GKN  421 (636)
T ss_dssp             CCTTSEEECTTCCEEECCSSCCS-SCC-SCCCTTCSSCEEEEECCSS--CTTTTT----------------------TCS
T ss_pred             ccHhhhhhcccCcEEEccCCcCc-ccc-hhhhhcccCccCEEECcCC--cCCCcc----------------------hhh
Confidence            6666777776 777777777776 555 3444433  5666666666  333333                      333


Q ss_pred             hh-------CCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCC
Q 047519          432 LR-------TLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMN  504 (892)
Q Consensus       432 l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n  504 (892)
                      +.       .+++|++|++++|.++...+..+..+  ++|++|++++|+++.+++..+.... -.+.++++|+.|++++|
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l--~~L~~L~Ls~N~l~~i~~~~~~~~~-~~~~~l~~L~~L~Ls~N  498 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTEIPKNSLKDEN-ENFKNTYLLTSIDLRFN  498 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT--CCCSEEECCSSCCSBCCSSSSEETT-EECTTGGGCCEEECCSS
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccC--CCCCEEECCCCCCCCcCHHHhcccc-ccccccCCccEEECcCC
Confidence            33       44556666666666653222223334  5666666666666533322222110 01122237888888888


Q ss_pred             ccCcccccccc--CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEc------cCCCCCCCcchhccCCCCCCEEEccCC
Q 047519          505 NFNGKISQKFV--NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV------GNNQINDNFPNWLEILPELQVLILRSN  576 (892)
Q Consensus       505 ~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~L~~N  576 (892)
                      +++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|+|      ++|++.+.+|.++..+++|++|++++|
T Consensus       499 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          499 KLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             cCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            888 6777776  88999999999999996 8888889999999999      568888999999999999999999999


Q ss_pred             cCCCCCCCCCCCcCCCCccEEEcCCCCCcCc
Q 047519          577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV  607 (892)
Q Consensus       577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  607 (892)
                      ++ +.+|..+  .  ++|++||+++|++...
T Consensus       577 ~l-~~ip~~~--~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          577 DI-RKVNEKI--T--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CC-CBCCSCC--C--TTCCEEECCSCTTCEE
T ss_pred             cC-CccCHhH--h--CcCCEEECcCCCCccc
Confidence            99 7788765  3  7999999999998743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-50  Score=488.09  Aligned_cols=492  Identities=17%  Similarity=0.163  Sum_probs=315.8

Q ss_pred             CCCCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCC-----CC--ccc------------cceEecCC
Q 047519            2 SAKLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDA-----DC--CSW------------DGVTCDTV   62 (892)
Q Consensus         2 ~~~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~-----~~--c~w------------~gv~C~~~   62 (892)
                      +++.+..+|+.||++||+++.++                   +|+.+.     +|  |.|            .||.|+. 
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~-------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-  321 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK-------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-  321 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG-------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-
T ss_pred             cccccchHHHHHHHHHHHHcCCC-------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-
Confidence            45667788999999999998432                   576432     55  999            9999987 


Q ss_pred             CCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEec-CCCCCCCCCCCCcCcCC-CCCC--------------eEeC-CCC
Q 047519           63 AGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNL-AFNDFNYSEISSGFSQL-RSLT--------------LLNL-SSS  125 (892)
Q Consensus        63 ~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~--------------~L~L-s~n  125 (892)
                      .|||++|+|++++++|.+|+  ++++|++|++||| ++|.+.|. .|-..... ..+.              .++. ...
T Consensus       322 ~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~  398 (876)
T 4ecn_A          322 NGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL  398 (876)
T ss_dssp             TSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred             CCCEEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence            58999999999999999998  9999999999999 88877664 22111101 0000              0000 000


Q ss_pred             CCcc-----------ccCCCCCcccCCCCceecCCc--ccCCcchhhhhhcccCCCCCCCEEecCCccCccc--------
Q 047519          126 NFMG-----------SIPASIDLINVSRLSTNYLPI--FAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKV--------  184 (892)
Q Consensus       126 ~~~~-----------~~p~~l~~~~L~~L~~L~Ls~--~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~--------  184 (892)
                      .+.+           ..+....  ....++.+.+..  |.+.+ +|..++    ++++|++|+|++|.+.+.        
T Consensus       399 ~~s~l~~~~l~~~~~~~~i~~~--~~l~l~~l~l~~~~N~L~~-IP~~l~----~L~~L~~L~Ls~N~Lsg~~i~~~~~~  471 (876)
T 4ecn_A          399 NLSDLLQDAINRNPEMKPIKKD--SRISLKDTQIGNLTNRITF-ISKAIQ----RLTKLQIIYFANSPFTYDNIAVDWED  471 (876)
T ss_dssp             GSCHHHHHHHHTCTTSCCCCCC--CCCCCCTTTTTCCSCEEEE-ECGGGG----GCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             hhhHHHHHHhhhCccccccccc--cccchhhceeccccCcccc-hhHHHh----cCCCCCEEECcCCcCCCCcccccccc
Confidence            1110           0111112  333444444444  44455 888888    889999999998888772        


Q ss_pred             ---------cccc-C--CCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCC-CCC-
Q 047519          185 ---------AEKE-N--WLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNR-TCG-  250 (892)
Q Consensus       185 ---------~~~~-~--~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~-~~~-  250 (892)
                               +|.. +  .+  ++|++|+|++|  .+.+.+|                ..++++++|++|++++|. +++ 
T Consensus       472 ~s~n~~~g~iP~~l~f~~L--~~L~~L~Ls~N--~l~~~iP----------------~~l~~L~~L~~L~Ls~N~~lsg~  531 (876)
T 4ecn_A          472 ANSDYAKQYENEELSWSNL--KDLTDVELYNC--PNMTQLP----------------DFLYDLPELQSLNIACNRGISAA  531 (876)
T ss_dssp             TTSHHHHHHTTSCCCGGGC--TTCCEEEEESC--TTCCSCC----------------GGGGGCSSCCEEECTTCTTSCHH
T ss_pred             cccccccccCChhhhhccC--CCCCEEECcCC--CCCccCh----------------HHHhCCCCCCEEECcCCCCcccc
Confidence                     3433 3  55  55555555555  5555555                455555555555555553 333 


Q ss_pred             cCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCc--cccCCCCCcEEecCccccccceeeccch
Q 047519          251 KTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPIN--WKSTLQSTVVLSTTEAEYMAITKAVKEA  328 (892)
Q Consensus       251 ~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~~~~n~l~~~~p~l  328 (892)
                      .+|..+++++              . .+..+++|++|++++|.++ .+|.  .++++++|+.|+++   +|.+. .+|.+
T Consensus       532 ~iP~~i~~L~--------------~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls---~N~l~-~lp~~  591 (876)
T 4ecn_A          532 QLKADWTRLA--------------D-DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV---HNKVR-HLEAF  591 (876)
T ss_dssp             HHHHHHHHHH--------------H-CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT---TSCCC-BCCCC
T ss_pred             cchHHHHhhh--------------h-cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC---CCCcc-cchhh
Confidence            3332221100              0 1223347778888887777 6777  77777777777777   77776 66666


Q ss_pred             hhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCC-CCEEECcCCcCCCccChhhcCCCCC--CCEEEcccCCCCCCcc
Q 047519          329 IWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELEN-LILLRLPSNRLSGTTELYDFAKLKN--LKWLFVSNNRLSLSTK  405 (892)
Q Consensus       329 ~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~Ls~n~l~~~~~  405 (892)
                             +.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+| ..+..++.  |+.|++++|  .+.+.
T Consensus       592 -------~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N--~l~g~  659 (876)
T 4ecn_A          592 -------GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYN--KIGSE  659 (876)
T ss_dssp             -------CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSS--CTTTT
T ss_pred             -------cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCC--cCCCc
Confidence                   77777777777777777 67777777777 777777777776 555 45554433  777777777  44443


Q ss_pred             ccCCC------CCCCccEEEccCCCCCCcchhh-hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCC
Q 047519          406 LKVNS------SFPNLFGLGLSACNISEFPDIL-RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE  478 (892)
Q Consensus       406 ~~~~~------~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  478 (892)
                      +|...      ..++|+.|++++|.++.+|..+ ..+++|+.|+|++|++. .+|..+                      
T Consensus       660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~----------------------  716 (876)
T 4ecn_A          660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS----------------------  716 (876)
T ss_dssp             SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS----------------------
T ss_pred             cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH----------------------
Confidence            33211      2234555555555555444433 24455555555555444 333222                      


Q ss_pred             CCCCCCCCeeecCCCCcccEEECCCCccCcccccccc--CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccC-----
Q 047519          479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV--NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGN-----  551 (892)
Q Consensus       479 ~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-----  551 (892)
                         +.... -.+.++++|+.|++++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++     
T Consensus       717 ---~~~~~-~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          717 ---LKPKD-GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             ---SSCTT-SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred             ---hcccc-ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence               11110 00112237778888888887 5677776  88889999999998886 788888888999998876     


Q ss_pred             -CCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519          552 -NQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       552 -N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (892)
                       |++.+.+|.++..+++|+.|+|++|++ +.+|..+  .  ++|+.|||++|++...-+
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--T--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--C--SSSCEEECCSCTTCEEEC
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC-CccCHhh--c--CCCCEEECCCCCCCccCh
Confidence             778888888888899999999999998 7777765  2  689999999998875444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-50  Score=496.64  Aligned_cols=525  Identities=18%  Similarity=0.164  Sum_probs=382.9

Q ss_pred             ccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCC-CCcCcCCCCCCeEeCCCCCCccc
Q 047519           52 CSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEI-SSGFSQLRSLTLLNLSSSNFMGS  130 (892)
Q Consensus        52 c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~~L~Ls~n~~~~~  130 (892)
                      |.|++|.+  ...+++.|||+++.+++..+.  ++.++++|++|||++|.+.+. + |..|+++++|++|+|++|.+.+.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~   88 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFL   88 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCccc
Confidence            67888887  446899999999999987777  899999999999999977665 5 78899999999999999999988


Q ss_pred             cCCCCCcccCCCCceecCCcccCCcchhhh--hhcccCCCCCCCEEecCCccCcccccc-c-CCCCCCcccEEEccCCCC
Q 047519          131 IPASIDLINVSRLSTNYLPIFAFSDCFQLD--VKTTFLHDDLEEEIYMTQLDGFKVAEK-E-NWLQEESFIYLLLHVDDM  206 (892)
Q Consensus       131 ~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~--l~~~~~~l~~L~~L~L~~~~~~~~~~~-~-~~l~~~~L~~L~Ls~n~~  206 (892)
                      .|..|+  ++++|++|+|++|...+.+|..  +.    ++++|++|+|++|.+.+..+. . +++  ++|++|+|++|  
T Consensus        89 ~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~----~L~~L~~L~Ls~N~l~~~~~~~~~~~L--~~L~~L~Ls~N--  158 (844)
T 3j0a_A           89 HPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFR----NLKALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSN--  158 (844)
T ss_dssp             CTTSSC--SCSSCCCEECTTCCCSSCCSTTCCCS----SCSSCCEEEEESCCCCCCCCCGGGGTC--SSCCEEEEESS--
T ss_pred             CHhHcc--CCcccCEeeCcCCCCCcccccCcccc----ccCCCCEEECCCCcccccccchhHhhC--CCCCEEECCCC--
Confidence            899999  9999999999998877777665  66    999999999999999887664 4 899  99999999999  


Q ss_pred             cCccCChhHHHHhhhcccccccccccccC--CCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCC
Q 047519          207 EIASKSKDEIEKLKTQLNQEFEMKDLGEA--KKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKR  284 (892)
Q Consensus       207 ~l~~~~p~~i~~l~~~~~~~~p~~~l~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L  284 (892)
                      .+++..|                ..+..+  ++|+.|++++|.+.+..|..++.+++               .+.+ ..|
T Consensus       159 ~i~~~~~----------------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~---------------~~~~-~~L  206 (844)
T 3j0a_A          159 QIFLVCE----------------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN---------------PFRN-MVL  206 (844)
T ss_dssp             CCCCCCS----------------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC---------------TTTT-CCB
T ss_pred             cCCeeCH----------------HHcccccCCccceEECCCCccccccccchhhcCC---------------cccc-Cce
Confidence            9988888                566665  89999999999888776655543321               1111 258


Q ss_pred             cEEEccCCCCCcCCCccccCC---CCCcEEecCccccccceee---------cc-chhhhhhccCC--CCCcCEEEccCC
Q 047519          285 RSITGYVFNFAGGPINWKSTL---QSTVVLSTTEAEYMAITKA---------VK-EAIWLQVFVRG--RRHYAEPHFSSN  349 (892)
Q Consensus       285 ~~L~L~~n~l~~~~p~~l~~l---~~L~~L~l~~~~~n~l~~~---------~p-~l~~l~l~~~~--l~~L~~L~Ls~n  349 (892)
                      ++|++++|.+.+..|..+...   +.++.|.++   .+.....         .+ .+       ..  .++|++|++++|
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~---~~~~~~~~~~~~l~~~~~~~f-------~~l~~~~L~~L~Ls~n  276 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILA---HHIMGAGFGFHNIKDPDQNTF-------AGLARSSVRHLDLSHG  276 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC---SSCCBCSSSCSSSTTGGGTTT-------TTTTTSCCCEEECTTC
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecc---cccccccccccccCCCChhhh-------hccccCCccEEECCCC
Confidence            888898888888777666543   567788776   4332211         11 22       33  478999999999


Q ss_pred             cCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc
Q 047519          350 QLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF  428 (892)
Q Consensus       350 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l  428 (892)
                      .+.+..|..|..+++|++|++++|.+++..+ ..|..+++|++|++++|  .+.+..+..+ .+++|+.|++++|.++.+
T Consensus       277 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  353 (844)
T 3j0a_A          277 FVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYN--LLGELYSSNFYGLPKVAYIDLQKNHIAII  353 (844)
T ss_dssp             CCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESC--CCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred             cccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCC--CCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence            9998889999999999999999999987666 78999999999999999  5556656556 899999999999999966


Q ss_pred             c-hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccC
Q 047519          429 P-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN  507 (892)
Q Consensus       429 p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~  507 (892)
                      + ..+..+++|++|++++|.+++. +.    +  ++|+.|++++|+++..+.. .           ..++.|++++|++.
T Consensus       354 ~~~~~~~l~~L~~L~Ls~N~l~~i-~~----~--~~L~~L~l~~N~l~~l~~~-~-----------~~l~~L~ls~N~l~  414 (844)
T 3j0a_A          354 QDQTFKFLEKLQTLDLRDNALTTI-HF----I--PSIPDIFLSGNKLVTLPKI-N-----------LTANLIHLSENRLE  414 (844)
T ss_dssp             CSSCSCSCCCCCEEEEETCCSCCC-SS----C--CSCSEEEEESCCCCCCCCC-C-----------TTCCEEECCSCCCC
T ss_pred             ChhhhcCCCCCCEEECCCCCCCcc-cC----C--CCcchhccCCCCccccccc-c-----------cccceeecccCccc
Confidence            5 4688899999999999999853 22    3  8899999999988754221 1           15566677777666


Q ss_pred             ccc-cccccCCCCCCEEEccCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCC
Q 047519          508 GKI-SQKFVNSCNLTNLNLNGNRLEGPLPL-SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDN  585 (892)
Q Consensus       508 ~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  585 (892)
                      +.. +..+..+++|++|++++|++++..+. .+..+++|++|++++|.++...+.                   +..+..
T Consensus       415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~-------------------~~~~~~  475 (844)
T 3j0a_A          415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET-------------------ELCWDV  475 (844)
T ss_dssp             SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS-------------------CCCSSC
T ss_pred             cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc-------------------ccchhh
Confidence            532 22234566666666666666543322 233455555666666555421110                   111122


Q ss_pred             CCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheee
Q 047519          586 TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTI  665 (892)
Q Consensus       586 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  665 (892)
                      +  ..+++|++|+|++|++++..|..+ .+                                           +++|+.|
T Consensus       476 ~--~~l~~L~~L~Ls~N~l~~~~~~~~-~~-------------------------------------------l~~L~~L  509 (844)
T 3j0a_A          476 F--EGLSHLQVLYLNHNYLNSLPPGVF-SH-------------------------------------------LTALRGL  509 (844)
T ss_dssp             S--SCBCCEECCCCCHHHHTTCCTTSS-SS-------------------------------------------CCSCSEE
T ss_pred             h--cCcccccEEECCCCcccccChhHc-cc-------------------------------------------hhhhhee
Confidence            2  445555555555555554443221 10                                           3455556


Q ss_pred             ecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCc
Q 047519          666 DLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIP  726 (892)
Q Consensus       666 dLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  726 (892)
                      +|++|++++..|..+.  ++|+.|+ |++|+|++.+|..|   .+|+.|++++|.+.+..+
T Consensus       510 ~Ls~N~l~~l~~~~~~--~~L~~L~-Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          510 SLNSNRLTVLSHNDLP--ANLEILD-ISRNQLLAPNPDVF---VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             EEESCCCSSCCCCCCC--SCCCEEE-EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred             ECCCCCCCccChhhhh--ccccEEE-CCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence            6666666544444443  5677777 77777777777654   367778888888776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5e-50  Score=477.10  Aligned_cols=518  Identities=17%  Similarity=0.140  Sum_probs=363.0

Q ss_pred             CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519           64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL  143 (892)
Q Consensus        64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L  143 (892)
                      .+++.|+|+++.+++..+.  ++.++++|++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|..|+  ++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFS--GLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSST--TCTTC
T ss_pred             CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcC--CcccC
Confidence            5799999999999987776  899999999999999999985 678899999999999999999988899999  77778


Q ss_pred             ceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcc-ccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhh
Q 047519          144 STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFK-VAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKT  221 (892)
Q Consensus       144 ~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~  221 (892)
                      ++|+++++...+..|..++    ++++|++|++++|.+.+ ..|.. +++  ++|++|++++|  .+++..|        
T Consensus       107 ~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~Ls~n--~l~~~~~--------  170 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIG----QLITLKKLNVAHNFIHSCKLPAYFSNL--TNLVHVDLSYN--YIQTITV--------  170 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCT----TCTTCCEEECCSSCCCCCCCCGGGGTC--TTCCEEECCSS--CCCEECT--------
T ss_pred             CEEEccCCccccccccccC----CCCCCCEEeCCCCcccceechHhHhhc--CCCCEEEccCC--cceecCh--------
Confidence            8777777664444445555    77777777777776654 33544 666  66666666666  6665555        


Q ss_pred             cccccccccccccCCC----CCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-
Q 047519          222 QLNQEFEMKDLGEAKK----ILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-  296 (892)
Q Consensus       222 ~~~~~~p~~~l~~l~~----L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-  296 (892)
                              ..++.+++    +++|++++|.+.+                      ++. ......+|++|++++|.+.+ 
T Consensus       171 --------~~~~~l~~L~~~l~~L~l~~n~l~~----------------------~~~-~~~~~~~L~~L~L~~n~~~~~  219 (606)
T 3vq2_A          171 --------NDLQFLRENPQVNLSLDMSLNPIDF----------------------IQD-QAFQGIKLHELTLRGNFNSSN  219 (606)
T ss_dssp             --------TTTHHHHHCTTCCCEEECTTCCCCE----------------------ECT-TTTTTCEEEEEEEESCCSCHH
T ss_pred             --------hhhhhhhccccccceeeccCCCcce----------------------eCc-ccccCceeeeeeccCCccchh
Confidence                    33333333    3356666654432                      222 22233367777777777663 


Q ss_pred             CCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEEC-cCCcC
Q 047519          297 GPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRL-PSNRL  375 (892)
Q Consensus       297 ~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-~~n~l  375 (892)
                      .+|..+.++++|+.+++.   .+.+.+.              ..++       .+....+..+..+ .++.+++ ..|.+
T Consensus       220 ~~~~~~~~l~~L~~l~l~---~~~~~~~--------------~~l~-------~~~~~~~~~l~~l-~l~~l~l~~~~~~  274 (606)
T 3vq2_A          220 IMKTCLQNLAGLHVHRLI---LGEFKDE--------------RNLE-------IFEPSIMEGLCDV-TIDEFRLTYTNDF  274 (606)
T ss_dssp             HHHHHHHTTTTCEEEEEE---EECCTTS--------------CCCS-------CCCGGGGTTGGGS-EEEEEEECCCTTC
T ss_pred             HHHHHhcccccccccccc---ccccccC--------------Cccc-------ccChHHhhhhhhc-cHhheeccccccc
Confidence            456667777777777665   3222110              0000       0000111112222 3445555 44555


Q ss_pred             CCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchh
Q 047519          376 SGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSW  455 (892)
Q Consensus       376 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~  455 (892)
                      .+.++ . +..+++|+.|++++|.+   ..++....+++|++|++++|.++.+|. + .+++|++|++++|...+.+  .
T Consensus       275 ~~~~~-~-~~~l~~L~~L~l~~~~~---~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~  345 (606)
T 3vq2_A          275 SDDIV-K-FHCLANVSAMSLAGVSI---KYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--K  345 (606)
T ss_dssp             CGGGG-S-CGGGTTCSEEEEESCCC---CCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--C
T ss_pred             ccccc-c-cccCCCCCEEEecCccc---hhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCccch--h
Confidence            55555 2 55666666666666632   122322255666666666666666663 3 6677777777777544333  2


Q ss_pred             hhhhCCCcccEEEccCCCCCCCC--CCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCC
Q 047519          456 MWDLGITALYYLDLSNNFLTNIE--YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGP  533 (892)
Q Consensus       456 ~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  533 (892)
                      +..+  ++|++|++++|.+++..  +..+..+.        +|++|++++|.+.+ +|..+..+++|++|++++|++.+.
T Consensus       346 ~~~l--~~L~~L~ls~n~l~~~~~~~~~~~~~~--------~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          346 KVAL--PSLSYLDLSRNALSFSGCCSYSDLGTN--------SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             CCCC--TTCCEEECCSSCEEEEEECCHHHHCCS--------CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred             hccC--CCCCEEECcCCccCCCcchhhhhccCC--------cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence            3334  67777777777666542  32223332        67777777777764 557788888999999999999877


Q ss_pred             CC-ccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC-CCCCCCCcCCCCccEEEcCCCCCcCcCCcc
Q 047519          534 LP-LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGDNTTIVPFPRFRIIDLSHNEFTGVLPTG  611 (892)
Q Consensus       534 ~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  611 (892)
                      .| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+  ..+++|++|++++|++++..|..
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~  492 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKCQLEQISWGV  492 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT
T ss_pred             cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCCcCCccChhh
Confidence            77 6788899999999999999988888899999999999999999874 66666  78899999999999999777654


Q ss_pred             hhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccc
Q 047519          612 YLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNN  691 (892)
Q Consensus       612 ~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~  691 (892)
                      + .+                                           +++|+.|++++|++++.+|..++++++|+.|+ 
T Consensus       493 ~-~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-  527 (606)
T 3vq2_A          493 F-DT-------------------------------------------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD-  527 (606)
T ss_dssp             T-TT-------------------------------------------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE-
T ss_pred             h-cc-------------------------------------------cccCCEEECCCCcCCCcCHHHccCCCcCCEEE-
Confidence            2 21                                           67899999999999998899999999999999 


Q ss_pred             cCCCCCCCCcchhccCCC-CCCeeeCCCCcCCCCCc
Q 047519          692 ISHNNLTGDIPSLLRNLT-EVESLDLSSNMLVGHIP  726 (892)
Q Consensus       692 Ls~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip  726 (892)
                      +++|+|+ .+|..+..++ +|+.|++++|.+.+..+
T Consensus       528 l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          528 CSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            9999999 7888899997 69999999999997655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.7e-47  Score=443.74  Aligned_cols=493  Identities=16%  Similarity=0.118  Sum_probs=307.8

Q ss_pred             CccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccc
Q 047519           51 CCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGS  130 (892)
Q Consensus        51 ~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~  130 (892)
                      .|.|.|| |+..          +++++ .+|.  .+.  ++|++|||++|.+++. .|..|+++++|++|+|++|.+.+.
T Consensus         3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDGR----------SRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EECT----------TSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EECC----------CCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            4999998 8643          34444 4555  343  7899999999999885 678899999999999999999987


Q ss_pred             cCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCcc
Q 047519          131 IPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIAS  210 (892)
Q Consensus       131 ~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~  210 (892)
                      .|..++  ++++|++|+++++.+.+..|..++    ++++|++|++                         ++|  .+++
T Consensus        66 ~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L-------------------------s~n--~l~~  112 (549)
T 2z81_A           66 EGDAFY--SLGSLEHLDLSDNHLSSLSSSWFG----PLSSLKYLNL-------------------------MGN--PYQT  112 (549)
T ss_dssp             CTTTTT--TCTTCCEEECTTSCCCSCCHHHHT----TCTTCCEEEC-------------------------TTC--CCSS
T ss_pred             Chhhcc--ccccCCEEECCCCccCccCHHHhc----cCCCCcEEEC-------------------------CCC--cccc
Confidence            778888  666666666655554444344444    4444444444                         444  4433


Q ss_pred             -CChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEc
Q 047519          211 -KSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITG  289 (892)
Q Consensus       211 -~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L  289 (892)
                       ..|                ..++++++|++|++++|.+.                     +.+|...+.++++|++|++
T Consensus       113 ~~~~----------------~~~~~l~~L~~L~L~~n~~~---------------------~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A          113 LGVT----------------SLFPNLTNLQTLRIGNVETF---------------------SEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             SCSS----------------CSCTTCTTCCEEEEEESSSC---------------------CEECTTTTTTCCEEEEEEE
T ss_pred             cchh----------------hhhhccCCccEEECCCCccc---------------------cccCHhhhhcccccCeeec
Confidence             123                34555556666666655322                     1222115566666777777


Q ss_pred             cCCCCCcCCCccccCCCCCcEEecCccccccceeecc--chhhhhhccCCCCCcCEEEccCCcCCcCC--C-ccccCCCC
Q 047519          290 YVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRGRRHYAEPHFSSNQLSGSI--P-SSVYELEN  364 (892)
Q Consensus       290 ~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~--p-~~l~~l~~  364 (892)
                      ++|.+++..|..++.+++|++|+++   .|.+. .+|  .+       ..+++|++|++++|.+++..  | .....+++
T Consensus       156 ~~n~l~~~~~~~l~~l~~L~~L~l~---~n~~~-~~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  224 (549)
T 2z81_A          156 KALSLRNYQSQSLKSIRDIHHLTLH---LSESA-FLLEIFA-------DILSSVRYLELRDTNLARFQFSPLPVDEVSSP  224 (549)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEE---CSBST-THHHHHH-------HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred             cCCcccccChhhhhccccCceEecc---cCccc-ccchhhH-------hhcccccEEEccCCccccccccccchhhhhhc
Confidence            7777776666677777777777776   65543 223  23       45677777777777776532  1 12234567


Q ss_pred             CCEEECcCCcCCCccCh---hhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEE
Q 047519          365 LILLRLPSNRLSGTTEL---YDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWF  441 (892)
Q Consensus       365 L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L  441 (892)
                      |+.|++++|.+++..+.   ..+..+++|+.+++++|.+.-.+..+..                  ....+..+++|+.|
T Consensus       225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~------------------~~~~~~~l~~L~~L  286 (549)
T 2z81_A          225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS------------------ESDVVSELGKVETV  286 (549)
T ss_dssp             CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC------------------TTTCCCCCTTCCEE
T ss_pred             ccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc------------------chhhhhhhcccccc
Confidence            77777777766543321   2234566677777777632111111000                  00112334445555


Q ss_pred             EccCCCCCCC-----CchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccc-c
Q 047519          442 NLSKNRIHGR-----ISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF-V  515 (892)
Q Consensus       442 ~Ls~n~l~~~-----~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~-~  515 (892)
                      ++.++.+...     ++..+...  +                                +|+.|++++|.+. .+|..+ .
T Consensus       287 ~l~~~~i~~~~~~~~l~~~~~~~--~--------------------------------~L~~L~l~~n~l~-~ip~~~~~  331 (549)
T 2z81_A          287 TIRRLHIPQFYLFYDLSTVYSLL--E--------------------------------KVKRITVENSKVF-LVPCSFSQ  331 (549)
T ss_dssp             EEESCBCSCGGGSCCCCHHHHHS--T--------------------------------TCCEEEEESSCCC-CCCHHHHH
T ss_pred             cccccccchhhhcccchhhhhhc--c--------------------------------cceEEEeccCccc-cCCHHHHh
Confidence            5555543311     11111111  2                                3344444444443 233333 3


Q ss_pred             CCCCCCEEEccCCCCCCCCCc---cccCCCCCcEEEccCCCCCCCcc--hhccCCCCCCEEEccCCcCCCCCCCCCCCcC
Q 047519          516 NSCNLTNLNLNGNRLEGPLPL---SLVNCHHLEVLDVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPIGDNTTIVP  590 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  590 (892)
                      .+++|++|++++|++++.+|.   .+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+  ..
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~  408 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC--QW  408 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC--CC
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh--cc
Confidence            456666666666666654432   25566677777777777766322  34666777777777777775 455544  56


Q ss_pred             CCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCC
Q 047519          591 FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSN  670 (892)
Q Consensus       591 l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  670 (892)
                      +++|++|++++|+++ .+|...                                              +++|+.||+++|
T Consensus       409 ~~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------~~~L~~L~Ls~N  441 (549)
T 2z81_A          409 PEKMRFLNLSSTGIR-VVKTCI----------------------------------------------PQTLEVLDVSNN  441 (549)
T ss_dssp             CTTCCEEECTTSCCS-CCCTTS----------------------------------------------CTTCSEEECCSS
T ss_pred             cccccEEECCCCCcc-cccchh----------------------------------------------cCCceEEECCCC
Confidence            677888888888776 233221                                              346788888888


Q ss_pred             cCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519          671 KFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       671 ~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      ++++.+    ..+++|++|+ |++|+|+ .+|. ...+++|++|||++|++++.+|..|..+++|+.|++++|+++|.+|
T Consensus       442 ~l~~~~----~~l~~L~~L~-Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          442 NLDSFS----LFLPRLQELY-ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCSCCC----CCCTTCCEEE-CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             Chhhhc----ccCChhcEEE-CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            888643    5788899998 9999998 6776 5789999999999999999989889999999999999999999888


Q ss_pred             C
Q 047519          751 Q  751 (892)
Q Consensus       751 ~  751 (892)
                      .
T Consensus       515 ~  515 (549)
T 2z81_A          515 R  515 (549)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=443.44  Aligned_cols=494  Identities=17%  Similarity=0.160  Sum_probs=330.1

Q ss_pred             CCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCC
Q 047519           90 PHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDD  169 (892)
Q Consensus        90 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~  169 (892)
                      +++++|||++|.+++. .+..|.++++|++|+|++|.+.+..|..|+                              +++
T Consensus        28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~------------------------------~l~   76 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQ------------------------------SLS   76 (570)
T ss_dssp             SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTT------------------------------TCT
T ss_pred             ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCccccc------------------------------Cch
Confidence            4688888888888774 456788888888888888887765555565                              677


Q ss_pred             CCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCC
Q 047519          170 LEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRT  248 (892)
Q Consensus       170 ~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~  248 (892)
                      +|++|+|++|.+.+..+.. ..+  ++|++|++++|  .+++..+                ..++++++|++|++++|.+
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n--~l~~l~~----------------~~~~~l~~L~~L~L~~n~l  136 (570)
T 2z63_A           77 HLSTLILTGNPIQSLALGAFSGL--SSLQKLVAVET--NLASLEN----------------FPIGHLKTLKELNVAHNLI  136 (570)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTC--TTCCEEECTTS--CCCCSTT----------------CSCTTCTTCCEEECCSSCC
T ss_pred             hCCEEeCcCCcCCccCHhhhcCc--ccccccccccc--ccccCCC----------------ccccccccccEEecCCCcc
Confidence            7777777777777666555 777  77888888777  6655443                4566677777777776644


Q ss_pred             CCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCC----cEEecCccccccceee
Q 047519          249 CGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQST----VVLSTTEAEYMAITKA  324 (892)
Q Consensus       249 ~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~l~~~~~n~l~~~  324 (892)
                      .+.                    .+|. .++++++|++|++++|.+++..|..++.+++|    +.|+++   +|.+.+.
T Consensus       137 ~~~--------------------~lp~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~---~n~l~~~  192 (570)
T 2z63_A          137 QSF--------------------KLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS---LNPMNFI  192 (570)
T ss_dssp             CCC--------------------CCCG-GGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT---TCCCCEE
T ss_pred             cee--------------------cChh-hhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC---CCCceec
Confidence            321                    2344 56666677777777777666555666665555    566666   6666555


Q ss_pred             cc-chhhhhhccCCCCCcCEEEccCCcCCc-CCCccccCCCCCCEEECcCCcCCC-----ccChhhcCCCCCCCEEEccc
Q 047519          325 VK-EAIWLQVFVRGRRHYAEPHFSSNQLSG-SIPSSVYELENLILLRLPSNRLSG-----TTELYDFAKLKNLKWLFVSN  397 (892)
Q Consensus       325 ~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~l~~L~~L~Ls~  397 (892)
                      .| .+       ... +|++|++++|.... .++..+..+++++.+.+....+..     .++...+..++++       
T Consensus       193 ~~~~~-------~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l-------  257 (570)
T 2z63_A          193 QPGAF-------KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL-------  257 (570)
T ss_dssp             CTTTT-------TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS-------
T ss_pred             CHHHh-------ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc-------
Confidence            55 33       222 56666666553321 233444555555554443222110     1111111111111       


Q ss_pred             CCCCCCccccCCCCCCCccEEEccCC-CCC-CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC
Q 047519          398 NRLSLSTKLKVNSSFPNLFGLGLSAC-NIS-EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT  475 (892)
Q Consensus       398 n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  475 (892)
                                      .++.++++++ .+. .+|..+..+++|+.|++++|.+. .+|.++..+   +|+.|++++|.+.
T Consensus       258 ----------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~---~L~~L~l~~n~~~  317 (570)
T 2z63_A          258 ----------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF---GWQHLELVNCKFG  317 (570)
T ss_dssp             ----------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC---CCSEEEEESCBCS
T ss_pred             ----------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC---CccEEeeccCccc
Confidence                            2334444444 222 34455555566666666666555 344443321   5566666666555


Q ss_pred             CCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCC--CccccCCCCCcEEEccCCC
Q 047519          476 NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL--PLSLVNCHHLEVLDVGNNQ  553 (892)
Q Consensus       476 ~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~N~  553 (892)
                      ..+..   .+        ++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  |..+..+++|++|++++|+
T Consensus       318 ~l~~~---~l--------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~  384 (570)
T 2z63_A          318 QFPTL---KL--------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG  384 (570)
T ss_dssp             SCCBC---BC--------SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred             ccCcc---cc--------cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc
Confidence            33221   11        2556666666666554443  56777888888888877543  5667788888888888888


Q ss_pred             CCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccC
Q 047519          554 INDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMT  633 (892)
Q Consensus       554 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~  633 (892)
                      +.+..+ .+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.+++..|..+ .                   
T Consensus       385 l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------------  442 (570)
T 2z63_A          385 VITMSS-NFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF-N-------------------  442 (570)
T ss_dssp             EEEEEE-EEETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECTTSCCEECCTTTT-T-------------------
T ss_pred             cccccc-cccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCcCCcccccchhhh-h-------------------
Confidence            877444 4778888888888888887765522 12778889999999998887666432 1                   


Q ss_pred             CCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCC
Q 047519          634 PLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVE  712 (892)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~  712 (892)
                                              .+++|+.|++++|+++ +.+|..++.+++|+.|+ +++|++++..|..|+++++|+
T Consensus       443 ------------------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          443 ------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-LSQCQLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             ------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE-CTTSCCCEECTTTTTTCTTCC
T ss_pred             ------------------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEE-CCCCccccCChhhhhcccCCC
Confidence                                    1677889999999987 57888999999999998 999999988899999999999


Q ss_pred             eeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC
Q 047519          713 SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS  753 (892)
Q Consensus       713 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  753 (892)
                      .|+|++|++++..|..|..+++|+.|++++|+++|.+|...
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            99999999999888899999999999999999999999754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.5e-46  Score=442.14  Aligned_cols=451  Identities=16%  Similarity=0.137  Sum_probs=326.5

Q ss_pred             CcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCC------CC------cCCccccCCCC
Q 047519          194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRT------CG------KTMDVGLLFEQ  261 (892)
Q Consensus       194 ~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~------~~------~~~~~l~~l~~  261 (892)
                      .+++.|+|+++  .+.|.+|                ..++++++|++|+|++|.+      .+      .+|...  +..
T Consensus        81 ~~V~~L~L~~~--~l~g~lp----------------~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~  140 (636)
T 4eco_A           81 GRVTGLSLEGF--GASGRVP----------------DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQK  140 (636)
T ss_dssp             CCEEEEECTTS--CCEEEEC----------------GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHH
T ss_pred             CCEEEEEecCc--ccCCcCC----------------hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHH
Confidence            47889999999  8888888                8999999999999999965      22      222222  222


Q ss_pred             cceec---ccceeecChhhhcC-CCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccC
Q 047519          262 DDTLG---QSVNGYVDSDYIGD-LDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVR  336 (892)
Q Consensus       262 L~~L~---~~~~~~~p~~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~  336 (892)
                      |+ ++   +.+.+.+|. .+.. +..+..+++....+..      .....++.+.+. ...|.+++ +| .+       +
T Consensus       141 l~-l~l~~~~l~~~~~~-~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~-~~~n~l~~-ip~~l-------~  203 (636)
T 4eco_A          141 MR-MHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIG-QLSNNITF-VSKAV-------M  203 (636)
T ss_dssp             HH-THHHHHHTCCCGGG-GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTT-CCSCEEEE-ECGGG-------G
T ss_pred             HH-hhHHHhhhccCchh-hHHHHHHHHhhcCcccccccc------ccccchhhhhhc-cccCCCcc-CCHHH-------h
Confidence            22 22   333333333 2221 1111111211111110      011122222222 01466777 77 77       7


Q ss_pred             CCCCcCEEEccCCcCCcC-----------------CCcccc--CCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEccc
Q 047519          337 GRRHYAEPHFSSNQLSGS-----------------IPSSVY--ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSN  397 (892)
Q Consensus       337 ~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~  397 (892)
                      ++++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+| ..+.++++|++|++++
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVAC  282 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTT
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcC
Confidence            788888888888888775                 788877  88888888888888887777 7778888888888888


Q ss_pred             CCCC-CCc-cccCCC-CC------CCccEEEccCCCCCCcch--hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccE
Q 047519          398 NRLS-LST-KLKVNS-SF------PNLFGLGLSACNISEFPD--ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY  466 (892)
Q Consensus       398 n~l~-~~~-~~~~~~-~l------~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~  466 (892)
                      |  . +.+ .+|..+ .+      ++|++|++++|+++.+|.  .++.+++|++|++++|++.|.+| .+..+  ++|++
T Consensus       283 n--~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l--~~L~~  357 (636)
T 4eco_A          283 N--RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE--IKLAS  357 (636)
T ss_dssp             C--TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--EEESE
T ss_pred             C--CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC--CCCCE
Confidence            8  5 555 555444 33      788888888888888887  88888889999999998888888 67776  88888


Q ss_pred             EEccCCCCCCCCCCCCCCCCeeecCCCCc-ccEEECCCCccCccccccccCCC--CCCEEEccCCCCCCCCCcccc----
Q 047519          467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLT-HKVLDMRMNNFNGKISQKFVNSC--NLTNLNLNGNRLEGPLPLSLV----  539 (892)
Q Consensus       467 L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~l~----  539 (892)
                      |++++|+++ .+|..+..+.        + |++|++++|.++ .+|..+..+.  +|++|++++|.+++.+|..+.    
T Consensus       358 L~L~~N~l~-~lp~~l~~l~--------~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~  427 (636)
T 4eco_A          358 LNLAYNQIT-EIPANFCGFT--------EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP  427 (636)
T ss_dssp             EECCSSEEE-ECCTTSEEEC--------TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred             EECCCCccc-cccHhhhhhc--------ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence            899888888 4454455544        6 888888888888 6777776654  889999999999888888887    


Q ss_pred             ---CCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcC-------CCCccEEEcCCCCCcCcCC
Q 047519          540 ---NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP-------FPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       540 ---~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~p  609 (892)
                         .+++|++|++++|+++...+..+..+++|++|++++|+++ .+|.... ..       +++|++|++++|+++ .+|
T Consensus       428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  504 (636)
T 4eco_A          428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL-KDENENFKNTYLLTSIDLRFNKLT-KLS  504 (636)
T ss_dssp             SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS-EETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred             ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh-ccccccccccCCccEEECcCCcCC-ccC
Confidence               7788999999999988644445567889999999999887 5554431 22       228899999999988 666


Q ss_pred             cchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccc
Q 047519          610 TGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL  689 (892)
Q Consensus       610 ~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L  689 (892)
                      ..+..                                          ..+++|+.|+|++|++++ +|..++++++|+.|
T Consensus       505 ~~~~~------------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L  541 (636)
T 4eco_A          505 DDFRA------------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF  541 (636)
T ss_dssp             GGGST------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred             hhhhh------------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence            54320                                          016778899999999996 88889999999999


Q ss_pred             ccc------CCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519          690 NNI------SHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       690 ~~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                      + |      ++|++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.|++++|++..
T Consensus       542 ~-Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          542 G-IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             E-CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             E-CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            8 8      56888889999999999999999999999 58888766  789999999998874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-44  Score=421.79  Aligned_cols=485  Identities=18%  Similarity=0.118  Sum_probs=404.6

Q ss_pred             CeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCC
Q 047519           64 GHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRL  143 (892)
Q Consensus        64 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L  143 (892)
                      .+++.|+|+++.+++..+.  ++..+++|++|||++|.+++. .|..|+++++|++|+|++|.+.+..|..|+  ++++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTC
T ss_pred             ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhc--Ccccc
Confidence            4689999999999977666  899999999999999999885 567899999999999999999987778999  99999


Q ss_pred             ceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcc-ccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhh
Q 047519          144 STNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFK-VAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKT  221 (892)
Q Consensus       144 ~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~  221 (892)
                      ++|+++++.....-+..++    ++++|++|++++|.+.+ ..|.. +++  ++|++|++++|  .+++..|        
T Consensus       103 ~~L~L~~n~l~~l~~~~~~----~l~~L~~L~L~~n~l~~~~lp~~~~~l--~~L~~L~l~~n--~l~~~~~--------  166 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNL--TNLEHLDLSSN--KIQSIYC--------  166 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCT----TCTTCCEEECCSSCCCCCCCCGGGGGC--TTCCEEECTTS--CCCEECG--------
T ss_pred             ccccccccccccCCCcccc----ccccccEEecCCCccceecChhhhccc--CCCCEEeCcCC--ccceecH--------
Confidence            9999999874443333566    99999999999999987 45766 889  99999999999  8888777        


Q ss_pred             cccccccccccccCCCC----CEEEcccCCCCCcCCccccCCCCcceec--ccce--eecChhhhcCCCCCcEEEccCCC
Q 047519          222 QLNQEFEMKDLGEAKKI----LGMEICRNRTCGKTMDVGLLFEQDDTLG--QSVN--GYVDSDYIGDLDKRRSITGYVFN  293 (892)
Q Consensus       222 ~~~~~~p~~~l~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~--~~~~--~~~p~~~l~~l~~L~~L~L~~n~  293 (892)
                              ..++.+++|    ++|++++|.+.+..+..+... +|+.|+  +...  ..++. .+..+++++.+.+....
T Consensus       167 --------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~-~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          167 --------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT-CIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             --------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH-HHHTTTTCEEEEEEEEE
T ss_pred             --------HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh-hhcCccccceeeecccc
Confidence                    666677777    899999999998888777766 788887  2221  23445 67788888877665432


Q ss_pred             CCc------CCCccccCCC--CCcEEecCccccc-cceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCC
Q 047519          294 FAG------GPINWKSTLQ--STVVLSTTEAEYM-AITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELE  363 (892)
Q Consensus       294 l~~------~~p~~l~~l~--~L~~L~l~~~~~n-~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  363 (892)
                      +..      .....+..++  .++.++++   ++ .+.+.+| .+       ..+++|++|++++|.++ .+|..+..+ 
T Consensus       237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~---~~~~~~~~~~~~~-------~~l~~L~~L~l~~~~l~-~l~~~~~~~-  304 (570)
T 2z63_A          237 FRNEGNLEKFDKSALEGLCNLTIEEFRLA---YLDYYLDDIIDLF-------NCLTNVSSFSLVSVTIE-RVKDFSYNF-  304 (570)
T ss_dssp             CCCCSSCEECCTTTTGGGGGSEEEEEEEE---ETTEEESCSTTTT-------GGGTTCSEEEEESCEEC-SCCBCCSCC-
T ss_pred             ccCchhhhhcchhhhccccccchhhhhhh---cchhhhhhchhhh-------cCcCcccEEEecCccch-hhhhhhccC-
Confidence            221      1112222232  35667776   66 6666777 77       88999999999999998 688889888 


Q ss_pred             CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCc---chhhhCCCCccE
Q 047519          364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEF---PDILRTLHQLQW  440 (892)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~  440 (892)
                      +|++|++++|.+. .+|.   ..+++|++|++++|  ...+..+. ..+++|++|++++|.++.+   |..+..+++|++
T Consensus       305 ~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n--~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~  377 (570)
T 2z63_A          305 GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSN--KGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY  377 (570)
T ss_dssp             CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESC--BSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCE
T ss_pred             CccEEeeccCccc-ccCc---ccccccCEEeCcCC--cccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCE
Confidence            9999999999998 6662   57899999999999  44444443 4789999999999999854   788999999999


Q ss_pred             EEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCC-CCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519          441 FNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN  519 (892)
Q Consensus       441 L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  519 (892)
                      |++++|.+.+..+. +..+  ++|+.|++++|.+.+..+ ..+..++        +|++|++++|.+.+..|..+..+++
T Consensus       378 L~l~~n~l~~~~~~-~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~  446 (570)
T 2z63_A          378 LDLSFNGVITMSSN-FLGL--EQLEHLDFQHSNLKQMSEFSVFLSLR--------NLIYLDISHTHTRVAFNGIFNGLSS  446 (570)
T ss_dssp             EECCSCSEEEEEEE-EETC--TTCCEEECTTSEEESCTTSCTTTTCT--------TCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             EECCCCcccccccc-cccc--CCCCEEEccCCccccccchhhhhcCC--------CCCEEeCcCCcccccchhhhhcCCc
Confidence            99999999865554 7777  999999999999998765 4455555        8999999999999999999999999


Q ss_pred             CCEEEccCCCCC-CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEE
Q 047519          520 LTNLNLNGNRLE-GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID  598 (892)
Q Consensus       520 L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  598 (892)
                      |++|++++|.++ +.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..+..+  ..+++|+.|+
T Consensus       447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~  524 (570)
T 2z63_A          447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIW  524 (570)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEE
T ss_pred             CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEE
Confidence            999999999997 5789999999999999999999999889999999999999999999998877766  8899999999


Q ss_pred             cCCCCCcCcCCcc
Q 047519          599 LSHNEFTGVLPTG  611 (892)
Q Consensus       599 Ls~N~l~~~~p~~  611 (892)
                      +++|++++..|..
T Consensus       525 l~~N~~~~~~~~~  537 (570)
T 2z63_A          525 LHTNPWDCSCPRI  537 (570)
T ss_dssp             CCSSCBCCCTTTT
T ss_pred             ecCCcccCCCcch
Confidence            9999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.5e-44  Score=426.06  Aligned_cols=563  Identities=17%  Similarity=0.106  Sum_probs=348.3

Q ss_pred             hcccCCcCCCCCCCCCCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCC
Q 047519           35 YQQSRPKMMSWKEDADCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQL  114 (892)
Q Consensus        35 ~~~~~~~l~~w~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l  114 (892)
                      |.+...++++|..+. +..|+.-.|......|   +=++.+++ .+|.  .+.  +.+++|||++|.|++. .|.+|.++
T Consensus         6 ~~~~~~~~~~~~~~~-p~~~~~c~~~~~~~~~---~c~~~~l~-~vP~--~lp--~~~~~LdLs~N~i~~l-~~~~f~~l   75 (635)
T 4g8a_A            6 YKDDDDKLAAANSSI-PESWEPCVEVVPNITY---QCMELNFY-KIPD--NLP--FSTKNLDLSFNPLRHL-GSYSFFSF   75 (635)
T ss_dssp             --------------------CCSEEEETTTEE---ECTTSCCS-SCCS--SSC--TTCCEEECTTSCCCEE-CTTTTTTC
T ss_pred             cCCCcchhhcccCCC-CCCCCCccccCCCCEE---ECCCCCcC-ccCC--CCC--cCCCEEEeeCCCCCCC-CHHHHhCC
Confidence            333445788887432 3345433333221112   33344555 4554  332  4799999999999984 45689999


Q ss_pred             CCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCC
Q 047519          115 RSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQE  193 (892)
Q Consensus       115 ~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~  193 (892)
                      ++|++|||++|.+++..|.+|+  +|++|++|+|++|.+.+-.+..+.    ++++|++|+|++|.+.+..+.. +++  
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~----~L~~L~~L~Ls~N~l~~l~~~~~~~L--  147 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHL--  147 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGT----TCTTCCEEECTTSCCCCSTTCCCTTC--
T ss_pred             CCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhc----CCCCCCEEECCCCcCCCCChhhhhcC--
Confidence            9999999999999876677788  777777777777663333333455    6777777777766666554444 566  


Q ss_pred             CcccEEEccCCCCcCccC-ChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceee
Q 047519          194 ESFIYLLLHVDDMEIASK-SKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGY  272 (892)
Q Consensus       194 ~~L~~L~Ls~n~~~l~~~-~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~  272 (892)
                      ++|++|+|++|  .+++. .|                ..++.+++|++|++++|.+.+..+..+.               
T Consensus       148 ~~L~~L~Ls~N--~l~~~~~~----------------~~~~~l~~L~~L~L~~N~l~~~~~~~l~---------------  194 (635)
T 4g8a_A          148 KTLKELNVAHN--LIQSFKLP----------------EYFSNLTNLEHLDLSSNKIQSIYCTDLR---------------  194 (635)
T ss_dssp             TTCCEEECCSS--CCCCCCCC----------------GGGGGCTTCCEEECCSSCCCEECGGGGH---------------
T ss_pred             cccCeeccccC--ccccCCCc----------------hhhccchhhhhhcccCcccccccccccc---------------
Confidence            66666666666  55432 33                4455555566666655544433222221               


Q ss_pred             cChhhhcCCC-CCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcC
Q 047519          273 VDSDYIGDLD-KRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQL  351 (892)
Q Consensus       273 ~p~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l  351 (892)
                          .+.+++ .+..++++.|.+....+..+ ....++.+++.   +|.....++                         
T Consensus       195 ----~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~---~n~~~~~~~-------------------------  241 (635)
T 4g8a_A          195 ----VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLR---NNFDSLNVM-------------------------  241 (635)
T ss_dssp             ----HHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEE---SCCSSHHHH-------------------------
T ss_pred             ----chhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhh---ccccccccc-------------------------
Confidence                111111 12345555555443222222 22233444444   333222211                         


Q ss_pred             CcCCCccccCCCCCCEEECcCCc------CCCccChhhcCCCCCCCEEEcccCCCCCC-ccccCCC-CCCCccEEEccCC
Q 047519          352 SGSIPSSVYELENLILLRLPSNR------LSGTTELYDFAKLKNLKWLFVSNNRLSLS-TKLKVNS-SFPNLFGLGLSAC  423 (892)
Q Consensus       352 ~~~~p~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~-~l~~L~~L~L~~n  423 (892)
                          +..+..+..++...+..+.      +..... ..+..+..+...++..+..... ....... ...+++.+.+.++
T Consensus       242 ----~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  316 (635)
T 4g8a_A          242 ----KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV  316 (635)
T ss_dssp             ----HHHHHTTTTCEEEEEEEECCTTSCCCSCCCT-TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC
T ss_pred             ----chhhcCCcccccccccccccccccccccccc-cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc
Confidence                1223333444333332211      111111 2333344444444444311111 1111112 4566677777766


Q ss_pred             CCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCC
Q 047519          424 NISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM  503 (892)
Q Consensus       424 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~  503 (892)
                      .+..++. +.....|+.|++.+|.+.+..+..   +  ..|+.+++..|.+.....  ...+        ++|+.++++.
T Consensus       317 ~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~---l--~~L~~l~l~~n~~~~~~~--~~~l--------~~L~~L~ls~  380 (635)
T 4g8a_A          317 TIERVKD-FSYNFGWQHLELVNCKFGQFPTLK---L--KSLKRLTFTSNKGGNAFS--EVDL--------PSLEFLDLSR  380 (635)
T ss_dssp             EEEECGG-GGSCCCCSEEEEESCEESSCCCCB---C--TTCCEEEEESCCSCCBCC--CCBC--------TTCCEEECCS
T ss_pred             ccccccc-cccchhhhhhhcccccccCcCccc---c--hhhhhcccccccCCCCcc--cccc--------cccccchhhc
Confidence            6655433 455677888888888776444332   2  677777877777654432  1222        3778888888


Q ss_pred             CccCc--cccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEEccCCcCCC
Q 047519          504 NNFNG--KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNRFWG  580 (892)
Q Consensus       504 n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~  580 (892)
                      |.+..  ..+..+..+.+|+.+++..|.+. ..+..+..+++|+.++++.|......+ ..+..+++++.++++.|.+.+
T Consensus       381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~  459 (635)
T 4g8a_A          381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  459 (635)
T ss_dssp             SCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred             cccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence            87753  34556667788999999988887 455677888999999998887666443 456788899999999999988


Q ss_pred             CCCCCCCCcCCCCccEEEcCCCCCcCc-CCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhh
Q 047519          581 PIGDNTTIVPFPRFRIIDLSHNEFTGV-LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL  659 (892)
Q Consensus       581 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  659 (892)
                      ..+..+  ..++.|++|++++|++.+. +|.. +.                                           .+
T Consensus       460 ~~~~~~--~~~~~L~~L~Ls~N~~~~~~~~~~-~~-------------------------------------------~l  493 (635)
T 4g8a_A          460 AFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT-------------------------------------------EL  493 (635)
T ss_dssp             CCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-------------------------------------------TC
T ss_pred             cccccc--ccchhhhhhhhhhcccccccCchh-hh-------------------------------------------hc
Confidence            877766  7788999999999986543 3332 22                                           16


Q ss_pred             hhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC-CCCCEE
Q 047519          660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVL  738 (892)
Q Consensus       660 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L  738 (892)
                      ++|+.|||++|+|++.+|..|+++++|++|+ |++|+|++..|..|+++++|++|||++|+|++..|..|..+ ++|++|
T Consensus       494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~-Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN-MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             cccCEEECCCCccCCcChHHHcCCCCCCEEE-CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence            7899999999999999999999999999998 99999999999999999999999999999999999999988 689999


Q ss_pred             ECCCCcCcccCC
Q 047519          739 NLSYNQFEGPIP  750 (892)
Q Consensus       739 ~ls~N~l~g~iP  750 (892)
                      ++++|++++.+.
T Consensus       573 ~L~~Np~~C~C~  584 (635)
T 4g8a_A          573 NLTQNDFACTCE  584 (635)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             EeeCCCCcccCC
Confidence            999999997654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.5e-44  Score=418.73  Aligned_cols=485  Identities=16%  Similarity=0.179  Sum_probs=322.7

Q ss_pred             CCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCC
Q 047519           92 IRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLE  171 (892)
Q Consensus        92 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L  171 (892)
                      ..+.|.+++.++.  +|+.+.  ++|++|+|++|.+++..|..++                              ++++|
T Consensus         7 ~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~------------------------------~l~~L   52 (549)
T 2z81_A            7 SGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLR------------------------------ACANL   52 (549)
T ss_dssp             TSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTS------------------------------SCTTC
T ss_pred             CceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhh------------------------------cCCcc
Confidence            3446778888876  787664  7899999999999877777777                              45555


Q ss_pred             CEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCC
Q 047519          172 EEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCG  250 (892)
Q Consensus       172 ~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~  250 (892)
                      ++|++++|.+.+..+.. ..+  ++|++|+|++|  .+++..|                .                    
T Consensus        53 ~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------~--------------------   92 (549)
T 2z81_A           53 QVLILKSSRINTIEGDAFYSL--GSLEHLDLSDN--HLSSLSS----------------S--------------------   92 (549)
T ss_dssp             CEEECTTSCCCEECTTTTTTC--TTCCEEECTTS--CCCSCCH----------------H--------------------
T ss_pred             cEEECCCCCcCccChhhcccc--ccCCEEECCCC--ccCccCH----------------H--------------------
Confidence            55555555444443333 444  55555555555  5554444                3                    


Q ss_pred             cCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc--c
Q 047519          251 KTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK--E  327 (892)
Q Consensus       251 ~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~  327 (892)
                                                .++++++|++|++++|.+++ ..|..++++++|++|+++   +|.+.+.+|  .
T Consensus        93 --------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~---~n~~~~~~~~~~  143 (549)
T 2z81_A           93 --------------------------WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG---NVETFSEIRRID  143 (549)
T ss_dssp             --------------------------HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE---ESSSCCEECTTT
T ss_pred             --------------------------HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC---CCccccccCHhh
Confidence                                      34455555555555555554 244556666666666666   665444444  5


Q ss_pred             hhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccc-
Q 047519          328 AIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL-  406 (892)
Q Consensus       328 l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-  406 (892)
                      +       .++++|++|++++|.+++..|..+..+++|++|+++.|.+. .++...+..+++|++|++++|+  +.+.. 
T Consensus       144 ~-------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~--l~~~~~  213 (549)
T 2z81_A          144 F-------AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN--LARFQF  213 (549)
T ss_dssp             T-------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCB--CTTCCC
T ss_pred             h-------hcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCc--cccccc
Confidence            6       66777777777777777777777777777777777777765 4443444567777777777773  33321 


Q ss_pred             -cCC--CCCCCccEEEccCCCCC-----CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCC
Q 047519          407 -KVN--SSFPNLFGLGLSACNIS-----EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIE  478 (892)
Q Consensus       407 -~~~--~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  478 (892)
                       +..  ..+++|+.|++++|.++     .++..+..+++|+.+++++|.+.+.                          .
T Consensus       214 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~--------------------------~  267 (549)
T 2z81_A          214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL--------------------------G  267 (549)
T ss_dssp             CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC--------------------------S
T ss_pred             cccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc--------------------------c
Confidence             111  13455566666655554     1223344555666666666655432                          1


Q ss_pred             CCCCCCCCeeecCCCCcccEEECCCCccCcc-----ccccccCCCCCCEEEccCCCCCCCCCccc-cCCCCCcEEEccCC
Q 047519          479 YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-----ISQKFVNSCNLTNLNLNGNRLEGPLPLSL-VNCHHLEVLDVGNN  552 (892)
Q Consensus       479 ~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~N  552 (892)
                      .......  -.+....+++.|++.++.+...     ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|
T Consensus       268 ~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          268 DFNPSES--DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             CCCCCTT--TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred             cccccch--hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence            1000000  0011112555555555544321     1222334578999999999998 677665 57999999999999


Q ss_pred             CCCCCcch---hccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccc
Q 047519          553 QINDNFPN---WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEV  629 (892)
Q Consensus       553 ~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~  629 (892)
                      ++++.+|.   .++.+++|++|++++|++++..+....+..+++|++|++++|+++ .+|..+ .               
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~---------------  407 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC-Q---------------  407 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC-C---------------
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh-c---------------
Confidence            99987653   477899999999999999764321111377899999999999998 566432 1               


Q ss_pred             cccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCC
Q 047519          630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT  709 (892)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~  709 (892)
                                                  .+++|+.|++++|+++ .+|..+.  ++|++|+ +++|+|++.+    .+++
T Consensus       408 ----------------------------~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~-Ls~N~l~~~~----~~l~  451 (549)
T 2z81_A          408 ----------------------------WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLD-VSNNNLDSFS----LFLP  451 (549)
T ss_dssp             ----------------------------CCTTCCEEECTTSCCS-CCCTTSC--TTCSEEE-CCSSCCSCCC----CCCT
T ss_pred             ----------------------------ccccccEEECCCCCcc-cccchhc--CCceEEE-CCCCChhhhc----ccCC
Confidence                                        1577999999999998 4555442  6899998 9999999753    5789


Q ss_pred             CCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 047519          710 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       710 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  773 (892)
                      +|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+....+.+|++.|++|
T Consensus       452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999999 7776 567999999999999999988763 356667788899999988765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-43  Score=428.72  Aligned_cols=442  Identities=14%  Similarity=0.133  Sum_probs=292.0

Q ss_pred             CcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEc-ccCCCCCcCCccccCCC-Cc-----ceec
Q 047519          194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEI-CRNRTCGKTMDVGLLFE-QD-----DTLG  266 (892)
Q Consensus       194 ~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L-~~n~~~~~~~~~l~~l~-~L-----~~L~  266 (892)
                      .+++.|+|+++  .+.|.+|                +.++++++|++|+| ++|.+.|..|....... .+     +.+.
T Consensus       323 ~~V~~L~Ls~~--~L~G~ip----------------~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr  384 (876)
T 4ecn_A          323 GRVTGLSLAGF--GAKGRVP----------------DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR  384 (876)
T ss_dssp             SCEEEEECTTT--CCEEEEC----------------GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHH
T ss_pred             CCEEEEECccC--CCCCcCc----------------hHHhccccceEeeecccccccccccccccccccccchhHHHHHH
Confidence            57999999999  8988888                89999999999999 88877766443211110 00     0000


Q ss_pred             -------------ccceeecCh----------hhhcCCCCCcEEEccC--CCCCcCCCccccCCCCCcEEecCccccccc
Q 047519          267 -------------QSVNGYVDS----------DYIGDLDKRRSITGYV--FNFAGGPINWKSTLQSTVVLSTTEAEYMAI  321 (892)
Q Consensus       267 -------------~~~~~~~p~----------~~l~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l  321 (892)
                                   ..+.+.++.          -.......++.+.+..  |.+++ +|..++++++|++|+++   +|.+
T Consensus       385 ~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls---~N~L  460 (876)
T 4ecn_A          385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA---NSPF  460 (876)
T ss_dssp             THHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE---SCCC
T ss_pred             HhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECc---CCcC
Confidence                         000000000          0001112222222222  44554 55555555666666665   5555


Q ss_pred             ee-----------------ecc-chhhhhhccC--CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCc-CCC-cc
Q 047519          322 TK-----------------AVK-EAIWLQVFVR--GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNR-LSG-TT  379 (892)
Q Consensus       322 ~~-----------------~~p-~l~~l~l~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~  379 (892)
                      ++                 .+| .+       +  ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+
T Consensus       461 sg~~i~~~~~~~s~n~~~g~iP~~l-------~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i  533 (876)
T 4ecn_A          461 TYDNIAVDWEDANSDYAKQYENEEL-------SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL  533 (876)
T ss_dssp             CGGGBSSSCSCTTSHHHHHHTTSCC-------CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH
T ss_pred             CCCcccccccccccccccccCChhh-------hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccc
Confidence            55                 355 44       4  67777777777777777777777777777777777776 665 55


Q ss_pred             ChhhcC-------CCCCCCEEEcccCCCCCCccccC--CC-CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC
Q 047519          380 ELYDFA-------KLKNLKWLFVSNNRLSLSTKLKV--NS-SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH  449 (892)
Q Consensus       380 ~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  449 (892)
                      | ..+.       .+++|++|++++|  .+. .+|.  .+ .+++|+.|++++|.++.+| .++.+++|+.|++++|.+.
T Consensus       534 P-~~i~~L~~~~~~l~~L~~L~Ls~N--~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          534 K-ADWTRLADDEDTGPKIQIFYMGYN--NLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             H-HHHHHHHHCTTTTTTCCEEECCSS--CCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS
T ss_pred             h-HHHHhhhhcccccCCccEEEeeCC--cCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc
Confidence            5 3333       3347777777777  333 4554  33 6677777777777777776 6677777777777777777


Q ss_pred             CCCchhhhhhCCCc-ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccc---c--CCCCCCEE
Q 047519          450 GRISSWMWDLGITA-LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKF---V--NSCNLTNL  523 (892)
Q Consensus       450 ~~~~~~~~~l~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L  523 (892)
                       .+|..+..+  ++ |+.|++++|.++ .+|..+..+.      .++|+.|++++|.+.+.+|...   .  .+++|+.|
T Consensus       609 -~lp~~l~~l--~~~L~~L~Ls~N~L~-~lp~~~~~~~------~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          609 -EIPEDFCAF--TDQVEGLGFSHNKLK-YIPNIFNAKS------VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             -CCCTTSCEE--CTTCCEEECCSSCCC-SCCSCCCTTC------SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             -cchHHHhhc--cccCCEEECcCCCCC-cCchhhhccc------cCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence             666666666  66 777777777776 3343333322      1147777777777776555322   2  34578899


Q ss_pred             EccCCCCCCCCCcc-ccCCCCCcEEEccCCCCCCCcchhccC--------CCCCCEEEccCCcCCCCCCCCCCCcCCCCc
Q 047519          524 NLNGNRLEGPLPLS-LVNCHHLEVLDVGNNQINDNFPNWLEI--------LPELQVLILRSNRFWGPIGDNTTIVPFPRF  594 (892)
Q Consensus       524 ~L~~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  594 (892)
                      ++++|.++ .+|.. +..+++|+.|+|++|+++. +|..+..        +++|+.|+|++|+++ .+|..+....+++|
T Consensus       679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL  755 (876)
T ss_dssp             ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred             EccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence            99999988 45554 4578889999999998884 5554432        238999999999997 66765521378999


Q ss_pred             cEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCC
Q 047519          595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG  674 (892)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  674 (892)
                      +.|+|++|++++ +|..+. +                                           +++|+.|+|++|+   
T Consensus       756 ~~L~Ls~N~L~~-lp~~l~-~-------------------------------------------L~~L~~L~Ls~N~---  787 (876)
T 4ecn_A          756 SNMDVSYNCFSS-FPTQPL-N-------------------------------------------SSQLKAFGIRHQR---  787 (876)
T ss_dssp             CEEECCSSCCSS-CCCGGG-G-------------------------------------------CTTCCEEECCCCB---
T ss_pred             CEEEeCCCCCCc-cchhhh-c-------------------------------------------CCCCCEEECCCCC---
Confidence            999999999987 675532 1                                           6778889998886   


Q ss_pred             CChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccC
Q 047519          675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI  749 (892)
Q Consensus       675 ~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  749 (892)
                                     + +++|++.+.+|..|+++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...-
T Consensus       788 ---------------~-ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          788 ---------------D-AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             ---------------C-TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             ---------------C-cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence                           4 788888888888888888888888888888 68887765  58888888888886443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.1e-43  Score=414.31  Aligned_cols=446  Identities=16%  Similarity=0.160  Sum_probs=304.7

Q ss_pred             CCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCC
Q 047519          169 DLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNR  247 (892)
Q Consensus       169 ~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~  247 (892)
                      ++|++|+|++|.+.+..+.. ..+  ++|++|+|++|  .+++..|                ..++++++|++|++++|.
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n--~l~~~~~----------------~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSL--SKLRILIISHN--RIQYLDI----------------SVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTC--TTCCEEECCSS--CCCEEEG----------------GGGTTCTTCCEEECCSSC
T ss_pred             ccccEEECCCCcccccChhhcccc--ccccEEecCCC--ccCCcCh----------------HHhhcccCCCEEecCCCc
Confidence            34445555555554444433 555  66666666666  6665555                566677777777777764


Q ss_pred             CCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc
Q 047519          248 TCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK  326 (892)
Q Consensus       248 ~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p  326 (892)
                      +.                      .+|. .  .+++|++|++++|.+++ .+|..++++++|++|+++   +|.+.+.  
T Consensus        81 l~----------------------~lp~-~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~---~n~l~~~--  130 (520)
T 2z7x_B           81 LV----------------------KISC-H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS---TTHLEKS--  130 (520)
T ss_dssp             CC----------------------EEEC-C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEE---ESSCCGG--
T ss_pred             ee----------------------ecCc-c--ccCCccEEeccCCccccccchhhhccCCcceEEEec---Ccccchh--
Confidence            43                      2333 2  66777777777777776 466777777777777777   7766542  


Q ss_pred             chhhhhhccCCCCCc--CEEEccCCcC--CcCCCccccCCC-CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCC
Q 047519          327 EAIWLQVFVRGRRHY--AEPHFSSNQL--SGSIPSSVYELE-NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLS  401 (892)
Q Consensus       327 ~l~~l~l~~~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  401 (892)
                      .+       ..+++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++...+..+++|+.|++++|  .
T Consensus       131 ~~-------~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n--~  201 (520)
T 2z7x_B          131 SV-------LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV--L  201 (520)
T ss_dssp             GG-------GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC--C
T ss_pred             hc-------cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc--c
Confidence            23       444555  7777777777  666666665554 23345666666665555455566666666666666  2


Q ss_pred             CCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhh-hhCCCcccEEEccCCCCCCCCCC
Q 047519          402 LSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMW-DLGITALYYLDLSNNFLTNIEYF  480 (892)
Q Consensus       402 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~  480 (892)
                      ......                .+......++.+++|+.|++++|.+.+..+..+. ....++|++|++++|++++..|.
T Consensus       202 ~~~~~~----------------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  265 (520)
T 2z7x_B          202 EDNKCS----------------YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF  265 (520)
T ss_dssp             STTTTH----------------HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred             cccccc----------------eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence            000000                0121112566777777777777776643322221 11115778888888877776666


Q ss_pred             CC-----CCCCeeecCCCCcccEEECCCCccCcccc-ccccCC---CCCCEEEccCCCCCCCCCccccCCCCCcEEEccC
Q 047519          481 PP-----TNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFVNS---CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGN  551 (892)
Q Consensus       481 ~~-----~~l~~L~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  551 (892)
                      .+     ..++        .|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++
T Consensus       266 ~~~~~~~~~l~--------~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          266 RDFDYSGTSLK--------ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSN  333 (520)
T ss_dssp             CCCCCCSCCCC--------EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred             chhhcccccCc--------eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeEC
Confidence            55     4554        778888888877  344 333333   57889999998887432  126788899999999


Q ss_pred             CCCCCCcchhccCCCCCCEEEccCCcCCC--CCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccc
Q 047519          552 NQINDNFPNWLEILPELQVLILRSNRFWG--PIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEV  629 (892)
Q Consensus       552 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~  629 (892)
                      |++++.+|.++..+++|++|++++|++++  .+|..+  ..+++|++|++++|++++.+|...+..              
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~--------------  397 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT--TQMKSLQQLDISQNSVSYDEKKGDCSW--------------  397 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH--TTCTTCCEEECCSSCCBCCGGGCSCCC--------------
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHH--hhCCCCCEEECCCCcCCcccccchhcc--------------
Confidence            99988888888889999999999998875  334444  678899999999999987666542211              


Q ss_pred             cccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCC
Q 047519          630 DYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT  709 (892)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~  709 (892)
                                                   ++.|+.|++++|++++.+|..+.  ++|+.|+ +++|+++ .+|..+.+++
T Consensus       398 -----------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~-Ls~N~l~-~ip~~~~~l~  444 (520)
T 2z7x_B          398 -----------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLD-LHSNKIK-SIPKQVVKLE  444 (520)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEE-CCSSCCC-CCCGGGGGCT
T ss_pred             -----------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEE-CCCCccc-ccchhhhcCC
Confidence                                         56788999999999888877665  7899998 9999999 8888888999


Q ss_pred             CCCeeeCCCCcCCCCCccc-cCCCCCCCEEECCCCcCcccCCC
Q 047519          710 EVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       710 ~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      +|++|+|++|+++ .+|.. |..+++|++|++++|+++|.+|.
T Consensus       445 ~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            9999999999999 56665 89999999999999999987763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=404.05  Aligned_cols=453  Identities=16%  Similarity=0.081  Sum_probs=299.7

Q ss_pred             EEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceec
Q 047519           68 GLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNY  147 (892)
Q Consensus        68 ~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~  147 (892)
                      .||+++++++ .+|.  .+.  ++|++|||++|.+.+. .|+.|+++++|++|+|++|.+.+..|..|+  ++++|++|+
T Consensus         4 ~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~   75 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLD   75 (520)
T ss_dssp             EEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEE
T ss_pred             eEecCCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEe
Confidence            5899999998 5666  455  8999999999999885 557899999999999999999988888999  999999999


Q ss_pred             CCcccCCcchhhhhhcccCCCCCCCEEecCCccCcc-ccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccc
Q 047519          148 LPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFK-VAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQ  225 (892)
Q Consensus       148 Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~-~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~  225 (892)
                      |++|.+. .+|..      .+++|++|+|++|.+.+ ..|.. +.+  ++|++|++++|  .+++               
T Consensus        76 Ls~N~l~-~lp~~------~l~~L~~L~L~~N~l~~~~~p~~~~~l--~~L~~L~L~~n--~l~~---------------  129 (520)
T 2z7x_B           76 LSHNKLV-KISCH------PTVNLKHLDLSFNAFDALPICKEFGNM--SQLKFLGLSTT--HLEK---------------  129 (520)
T ss_dssp             CCSSCCC-EEECC------CCCCCSEEECCSSCCSSCCCCGGGGGC--TTCCEEEEEES--SCCG---------------
T ss_pred             cCCCcee-ecCcc------ccCCccEEeccCCccccccchhhhccC--CcceEEEecCc--ccch---------------
Confidence            9998744 56655      58899999999999887 45556 888  99999999998  7754               


Q ss_pred             cccccccccCCCC--CEEEcccCCC--CCcCCccccCCCCcceec-----ccceeecChhhhcCCCCCcEEEccCCC---
Q 047519          226 EFEMKDLGEAKKI--LGMEICRNRT--CGKTMDVGLLFEQDDTLG-----QSVNGYVDSDYIGDLDKRRSITGYVFN---  293 (892)
Q Consensus       226 ~~p~~~l~~l~~L--~~L~L~~n~~--~~~~~~~l~~l~~L~~L~-----~~~~~~~p~~~l~~l~~L~~L~L~~n~---  293 (892)
                          ..+..+++|  ++|++++|.+  .+..|..+..+.. +.++     +.+.+.++...+.++++|+.|++++|.   
T Consensus       130 ----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  204 (520)
T 2z7x_B          130 ----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN  204 (520)
T ss_dssp             ----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred             ----hhccccccceeeEEEeeccccccccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence                234556666  9999999988  7777777666553 2222     444555554355566666666666665   


Q ss_pred             ----CCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccc-----cCCC
Q 047519          294 ----FAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSV-----YELE  363 (892)
Q Consensus       294 ----l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~  363 (892)
                          +.+.+| .++.+++|+.|+++   +|.+.+..+ .+..    ....++|++|++++|.++|.+|..+     ..++
T Consensus       205 ~~~~~~~~~~-~l~~l~~L~~L~l~---~~~l~~~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~  276 (520)
T 2z7x_B          205 KCSYFLSILA-KLQTNPKLSNLTLN---NIETTWNSFIRILQ----LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK  276 (520)
T ss_dssp             TTHHHHHHHH-GGGGCTTCCEEEEE---EEEEEHHHHHHHHH----HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred             ccceeecchh-hhccccchhhcccc---ccccCHHHHHHHHH----HhhhCcccEEEeecccccCccccchhhcccccCc
Confidence                444444 45666666666666   665554332 1100    0113466666666666666666665     5666


Q ss_pred             CCCEEECcCCcCCCccChhhcCCC---CCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCC-CcchhhhCCCCcc
Q 047519          364 NLILLRLPSNRLSGTTELYDFAKL---KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNIS-EFPDILRTLHQLQ  439 (892)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~  439 (892)
                      +|+.+++++|.+  .+|...+..+   .+|+.|++++|.+  ... +....+++|++|++++|.++ .+|..++.+++|+
T Consensus       277 ~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  351 (520)
T 2z7x_B          277 ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM--VHM-LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE  351 (520)
T ss_dssp             EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC--CCC-CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred             eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc--ccc-cchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence            666666666665  3332222222   4566666666622  111 10013455555555555555 2444455555555


Q ss_pred             EEEccCCCCCC--CCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc-cccC
Q 047519          440 WFNLSKNRIHG--RISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ-KFVN  516 (892)
Q Consensus       440 ~L~Ls~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~-~~~~  516 (892)
                      +|++++|++++  .+|..+..+  +                                +|++|++++|.+.+.+|. .+..
T Consensus       352 ~L~L~~N~l~~l~~~~~~~~~l--~--------------------------------~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          352 TLILQMNQLKELSKIAEMTTQM--K--------------------------------SLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             EEECCSSCCCBHHHHHHHHTTC--T--------------------------------TCCEEECCSSCCBCCGGGCSCCC
T ss_pred             EEEccCCccCccccchHHHhhC--C--------------------------------CCCEEECCCCcCCcccccchhcc
Confidence            55555555543  223333333  4                                555555555555553443 3566


Q ss_pred             CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccE
Q 047519          517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI  596 (892)
Q Consensus       517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  596 (892)
                      +++|++|++++|++++.+|..+.  ++|++|++++|+++. +|..+..+++|++|++++|++++ +|.. .+..+++|++
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~  472 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQK  472 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCE
T ss_pred             CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccE
Confidence            77788888888888766665553  678888888888874 67777788888888888888874 4443 2377889999


Q ss_pred             EEcCCCCCcCcCCcc
Q 047519          597 IDLSHNEFTGVLPTG  611 (892)
Q Consensus       597 L~Ls~N~l~~~~p~~  611 (892)
                      |++++|++++..+..
T Consensus       473 L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          473 IWLHTNPWDCSCPRI  487 (520)
T ss_dssp             EECCSSCBCCCHHHH
T ss_pred             EECcCCCCcccCCch
Confidence            999999998766543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.5e-41  Score=403.42  Aligned_cols=534  Identities=17%  Similarity=0.091  Sum_probs=369.5

Q ss_pred             CeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCC
Q 047519           93 RKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEE  172 (892)
Q Consensus        93 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~  172 (892)
                      ++.|=++.+++.  +|..+.  +++++||||+|.+++..|.+|.  ++++|++|+|++|.+.+-.|..+.    ++++  
T Consensus        34 ~~~~c~~~~l~~--vP~~lp--~~~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~----~L~~--  101 (635)
T 4g8a_A           34 ITYQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQ----SLSH--  101 (635)
T ss_dssp             TEEECTTSCCSS--CCSSSC--TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTT----TCTT--
T ss_pred             CEEECCCCCcCc--cCCCCC--cCCCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhc----CCCC--
Confidence            344555556665  776653  5899999999999866666788  666666665555543322222333    4444  


Q ss_pred             EEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcC
Q 047519          173 EIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKT  252 (892)
Q Consensus       173 ~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~  252 (892)
                                             |++|+|++|  .+++..+                ..|.++++|++|++++|.+.+..
T Consensus       102 -----------------------L~~L~Ls~N--~l~~l~~----------------~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A          102 -----------------------LSTLILTGN--PIQSLAL----------------GAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             -----------------------CCEEECTTC--CCCEECG----------------GGGTTCTTCCEEECTTSCCCCST
T ss_pred             -----------------------CCEEEccCC--cCCCCCH----------------HHhcCCCCCCEEECCCCcCCCCC
Confidence                                   444555555  4443333                34555555555555555443211


Q ss_pred             CccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc-chhh
Q 047519          253 MDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIW  330 (892)
Q Consensus       253 ~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~  330 (892)
                      +                     . .++++++|++|++++|.+.+ .+|..++.+++|++|+++   +|.+.+..| .+..
T Consensus       141 ~---------------------~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~---~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          141 N---------------------F-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS---SNKIQSIYCTDLRV  195 (635)
T ss_dssp             T---------------------C-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC---SSCCCEECGGGGHH
T ss_pred             h---------------------h-hhhcCcccCeeccccCccccCCCchhhccchhhhhhccc---Cccccccccccccc
Confidence            1                     1 45556666666666666654 345666666677777777   666666555 3311


Q ss_pred             hhhccCCC-CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccc---
Q 047519          331 LQVFVRGR-RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL---  406 (892)
Q Consensus       331 l~l~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---  406 (892)
                      +    .++ .....++++.|.++...+. ......++.+++.+|.....+....+..+..++...+..+........   
T Consensus       196 L----~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          196 L----HQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             H----HTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             h----hhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            1    111 2234678888888755444 444556788999988776555556778888888887765522111111   


Q ss_pred             -cCCC-CCCCccEEEccCCCCC----CcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCC
Q 047519          407 -KVNS-SFPNLFGLGLSACNIS----EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYF  480 (892)
Q Consensus       407 -~~~~-~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~  480 (892)
                       .... ....+....+..+...    .++..+..+.+++.+++.++.+....+  +...  ..++.|++.+|.+....+.
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~~~~~~~  346 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN--FGWQHLELVNCKFGQFPTL  346 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSC--CCCSEEEEESCEESSCCCC
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccc--hhhhhhhcccccccCcCcc
Confidence             1111 3455555655554433    334556677889999999988764332  3334  7899999999988876654


Q ss_pred             CCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCC--CCCCccccCCCCCcEEEccCCCCCCCc
Q 047519          481 PPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNF  558 (892)
Q Consensus       481 ~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~  558 (892)
                      .+.           .|+.+++..|.+...  .....+++|+.|++++|.+.  +..+..+..+.+|+.+++..|.+.. .
T Consensus       347 ~l~-----------~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~  412 (635)
T 4g8a_A          347 KLK-----------SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-M  412 (635)
T ss_dssp             BCT-----------TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-E
T ss_pred             cch-----------hhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-c
Confidence            443           566777777776543  23457889999999999885  3455667788899999999998876 4


Q ss_pred             chhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCC
Q 047519          559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS  638 (892)
Q Consensus       559 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~  638 (892)
                      +..+..+++|+.++++.|......+.. .+..+++++.++++.|.+.+..|..+ .                        
T Consensus       413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n~l~~~~~~~~-~------------------------  466 (635)
T 4g8a_A          413 SSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIF-N------------------------  466 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSCCEECCTTTT-T------------------------
T ss_pred             cccccccccccchhhhhcccccccccc-cccccccccccccccccccccccccc-c------------------------
Confidence            566778999999999988876655543 24788899999999999987666432 1                        


Q ss_pred             CccceEEEEEccchhhHHHhhhhheeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCC
Q 047519          639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLS  717 (892)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  717 (892)
                                         .++.++.|++++|++. +.+|..+..+++|++|+ |++|+|++.+|..|+++++|++|+|+
T Consensus       467 -------------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~-Ls~N~L~~l~~~~f~~l~~L~~L~Ls  526 (635)
T 4g8a_A          467 -------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD-LSQCQLEQLSPTAFNSLSSLQVLNMS  526 (635)
T ss_dssp             -------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE-CTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             -------------------cchhhhhhhhhhcccccccCchhhhhccccCEEE-CCCCccCCcChHHHcCCCCCCEEECC
Confidence                               1677899999999854 46788899999999999 99999999999999999999999999


Q ss_pred             CCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCC-C-CcccCCccCCCCCCCCCC
Q 047519          718 SNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQ-F-NTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       718 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~-~-~~~~~~~~~gN~~lc~~~  773 (892)
                      +|+|++..|..|..+++|++|++++|+|++.+|.... + .++....+.|||+.|+|.
T Consensus       527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9999999999999999999999999999999887542 2 456777889999999864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.8e-41  Score=396.15  Aligned_cols=494  Identities=16%  Similarity=0.116  Sum_probs=342.7

Q ss_pred             CCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCC
Q 047519           90 PHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDD  169 (892)
Q Consensus        90 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~  169 (892)
                      ...+++|+++|.+++  +|..+.  ++|++|+|++|.+.+..|..++                              ++ 
T Consensus        31 ~~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~------------------------------~l-   75 (562)
T 3a79_B           31 ELESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDIS------------------------------FL-   75 (562)
T ss_dssp             --CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTT------------------------------TC-
T ss_pred             CCCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhc------------------------------cC-
Confidence            344778888888776  666554  7788888888877755555555                              22 


Q ss_pred             CCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCC
Q 047519          170 LEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTC  249 (892)
Q Consensus       170 ~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~  249 (892)
                                              ++|++|+|++|  .+++..|                ..+.++++|++|++++|.+.
T Consensus        76 ------------------------~~L~~L~Ls~N--~l~~~~~----------------~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           76 ------------------------SELRVLRLSHN--RIRSLDF----------------HVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             ------------------------TTCCEEECCSC--CCCEECT----------------TTTTTCTTCCEEECTTSCCC
T ss_pred             ------------------------CCccEEECCCC--CCCcCCH----------------HHhCCCCCCCEEECCCCcCC
Confidence                                    45555556666  6666666                67888888999999888654


Q ss_pred             CcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCc-CCCccccCCCCCcEEecCccccccceeecc-c
Q 047519          250 GKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAG-GPINWKSTLQSTVVLSTTEAEYMAITKAVK-E  327 (892)
Q Consensus       250 ~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~  327 (892)
                                            .+|. .  .+++|++|++++|.+++ .+|..++++++|++|+++   +|.+.+... .
T Consensus       114 ----------------------~lp~-~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~---~n~l~~~~~~~  165 (562)
T 3a79_B          114 ----------------------NISC-C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS---AAKFRQLDLLP  165 (562)
T ss_dssp             ----------------------EECS-C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE---CSBCCTTTTGG
T ss_pred             ----------------------ccCc-c--ccccCCEEECCCCCccccCchHhhcccCcccEEecC---CCccccCchhh
Confidence                                  2444 3  67888999999998887 456788888888888888   887764211 3


Q ss_pred             hhhhhhccCCCCCcCEEEccCCcC--CcCCCccccCCC--CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCC
Q 047519          328 AIWLQVFVRGRRHYAEPHFSSNQL--SGSIPSSVYELE--NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS  403 (892)
Q Consensus       328 l~~l~l~~~~l~~L~~L~Ls~n~l--~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  403 (892)
                      +       ..+ +|++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++|+.|++++|.....
T Consensus       166 l-------~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  236 (562)
T 3a79_B          166 V-------AHL-HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ  236 (562)
T ss_dssp             G-------TTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred             h-------hhc-eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence            3       333 448888888887  777777776654  23 4566777776666655566666777777766621000


Q ss_pred             ccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhh-hhhCCCcccEEEccCCCCCCCCCCCC
Q 047519          404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWM-WDLGITALYYLDLSNNFLTNIEYFPP  482 (892)
Q Consensus       404 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~  482 (892)
                                          .+...+..+..+++|+.|+++++.+.+.....+ .....++|++|++++|.+++.+|..+
T Consensus       237 --------------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~  296 (562)
T 3a79_B          237 --------------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE  296 (562)
T ss_dssp             --------------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred             --------------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence                                011223456677777777777776654221111 11112578888888888887766554


Q ss_pred             -----CCCCeeecCCCCcccEEECCCCccCcccc-cccc---CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCC
Q 047519          483 -----TNMTQLNFDSNLTHKVLDMRMNNFNGKIS-QKFV---NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQ  553 (892)
Q Consensus       483 -----~~l~~L~l~~~~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~  553 (892)
                           .+++        .|+.+++..+.+  .+| ..+.   ...+|++|++++|.+....  ....+++|++|++++|+
T Consensus       297 ~~~~~~~L~--------~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~  364 (562)
T 3a79_B          297 FTYSETALK--------SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV  364 (562)
T ss_dssp             CCCCSCSCC--------EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred             hhcccccch--------heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence                 4444        556666666665  333 2222   2257999999999886332  12678899999999999


Q ss_pred             CCCCcchhccCCCCCCEEEccCCcCCCCC--CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccc
Q 047519          554 INDNFPNWLEILPELQVLILRSNRFWGPI--GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY  631 (892)
Q Consensus       554 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~  631 (892)
                      +++.+|.++..+++|++|++++|++++..  |..+  ..+++|++|++++|++++.+|...+..                
T Consensus       365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~~~----------------  426 (562)
T 3a79_B          365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDRTCAW----------------  426 (562)
T ss_dssp             CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT--TTCTTCCEEECTTSCCBSCCSSCCCCC----------------
T ss_pred             cccchhhhhcccCCCCEEECCCCCcCCcccchhhh--cCCCCCCEEECCCCcCCCccChhhhcC----------------
Confidence            99988999999999999999999997633  3334  788999999999999998677553321                


Q ss_pred             cCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCC
Q 047519          632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEV  711 (892)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L  711 (892)
                                                 ++.|+.|++++|++++.+|..+.  ++|+.|+ +++|+|+ .+|..+.++++|
T Consensus       427 ---------------------------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~-L~~N~l~-~ip~~~~~l~~L  475 (562)
T 3a79_B          427 ---------------------------AESILVLNLSSNMLTGSVFRCLP--PKVKVLD-LHNNRIM-SIPKDVTHLQAL  475 (562)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEE-CCSSCCC-CCCTTTTSSCCC
T ss_pred             ---------------------------cccCCEEECCCCCCCcchhhhhc--CcCCEEE-CCCCcCc-ccChhhcCCCCC
Confidence                                       56789999999999887777654  6899998 9999999 788878899999


Q ss_pred             CeeeCCCCcCCCCCccc-cCCCCCCCEEECCCCcCcccCCCCCCCCcc---cCCccCCCCCCCCCCCCCCCCC
Q 047519          712 ESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQGSQFNTF---RNDSYVGNSGLCGFPLLESCNI  780 (892)
Q Consensus       712 ~~L~Ls~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~---~~~~~~gN~~lc~~~~~~~c~~  780 (892)
                      +.|+|++|+++ .+|.. |..+++|+.|++++|+++|.+|....+..+   ....+ .+..-|++|....|..
T Consensus       476 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV-RNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTE-ECSSSSBCSSSSCBSS
T ss_pred             CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcc-cccccCCCCCCCccCC
Confidence            99999999999 56665 999999999999999999888743221211   11111 1223346666677865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-40  Score=388.53  Aligned_cols=453  Identities=17%  Similarity=0.093  Sum_probs=321.1

Q ss_pred             EEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCcee
Q 047519           67 IGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTN  146 (892)
Q Consensus        67 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L  146 (892)
                      +.+|++++++++ +|.  .+.  ++|++|||++|.+.+. .|..|+++++|++|+|++|.+++..|..|+          
T Consensus        34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------   97 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFL----------   97 (562)
T ss_dssp             CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTT----------
T ss_pred             cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhC----------
Confidence            678999999995 665  443  8999999999999985 567899999999999999999987787777          


Q ss_pred             cCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccc
Q 047519          147 YLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQE  226 (892)
Q Consensus       147 ~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~  226 (892)
                                          ++++|++|+|++|.+..                            +|             
T Consensus        98 --------------------~l~~L~~L~Ls~N~l~~----------------------------lp-------------  116 (562)
T 3a79_B           98 --------------------FNQDLEYLDVSHNRLQN----------------------------IS-------------  116 (562)
T ss_dssp             --------------------TCTTCCEEECTTSCCCE----------------------------EC-------------
T ss_pred             --------------------CCCCCCEEECCCCcCCc----------------------------cC-------------
Confidence                                55555555555554431                            22             


Q ss_pred             ccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCC
Q 047519          227 FEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQ  306 (892)
Q Consensus       227 ~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  306 (892)
                         ..  .+++|++|++++|.+.+.                    .+|. .++++++|++|++++|.+.+..   +..++
T Consensus       117 ---~~--~l~~L~~L~Ls~N~l~~l--------------------~~p~-~~~~l~~L~~L~L~~n~l~~~~---~~~l~  167 (562)
T 3a79_B          117 ---CC--PMASLRHLDLSFNDFDVL--------------------PVCK-EFGNLTKLTFLGLSAAKFRQLD---LLPVA  167 (562)
T ss_dssp             ---SC--CCTTCSEEECCSSCCSBC--------------------CCCG-GGGGCTTCCEEEEECSBCCTTT---TGGGT
T ss_pred             ---cc--ccccCCEEECCCCCcccc--------------------CchH-hhcccCcccEEecCCCccccCc---hhhhh
Confidence               22  445555555555543321                    1234 7888899999999999988643   44445


Q ss_pred             CC--cEEecCccccccc--eeecc-chhhhhhccCCCC--CcCEEEccCCcCCcCCCc-cccCCCCCCEEECcCCcC---
Q 047519          307 ST--VVLSTTEAEYMAI--TKAVK-EAIWLQVFVRGRR--HYAEPHFSSNQLSGSIPS-SVYELENLILLRLPSNRL---  375 (892)
Q Consensus       307 ~L--~~L~l~~~~~n~l--~~~~p-~l~~l~l~~~~l~--~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l---  375 (892)
                      +|  +.|+++   +|.+  .+..| .+       ..+.  .+ .++++.|.+.+.++. .+..+++|+.|++++|..   
T Consensus       168 ~L~L~~L~L~---~n~l~~~~~~~~~l-------~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  236 (562)
T 3a79_B          168 HLHLSCILLD---LVSYHIKGGETESL-------QIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ  236 (562)
T ss_dssp             TSCEEEEEEE---ESSCCCCSSSCCEE-------EECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred             hceeeEEEee---cccccccccCcccc-------cccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence            55  999999   9998  77777 55       4333  33 668899998876654 466889999999999852   


Q ss_pred             --CCccChhhcCCCCCCCEEEcccCCCCCCccc----cCCCCCCCccEEEccCCCCC-Ccchhh-----hCCCCccEEEc
Q 047519          376 --SGTTELYDFAKLKNLKWLFVSNNRLSLSTKL----KVNSSFPNLFGLGLSACNIS-EFPDIL-----RTLHQLQWFNL  443 (892)
Q Consensus       376 --~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~-~lp~~l-----~~l~~L~~L~L  443 (892)
                        .+.+  ..+..+++|+.|++.++  .+.+..    +.....++|++|++++|.++ .+|..+     ..++.|+.+++
T Consensus       237 ~l~~~~--~~l~~l~~L~~L~L~~~--~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~  312 (562)
T 3a79_B          237 RLMTFL--SELTRGPTLLNVTLQHI--ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV  312 (562)
T ss_dssp             HHHHHH--HHHHSCSSCEEEEEEEE--EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred             hHHHHH--HHHhccCcceEEEecCC--cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence              2222  35778889999998887  322211    00012235555555555555 455443     44444444444


Q ss_pred             cCCCCCCCCc-hhhhhh-CCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCC
Q 047519          444 SKNRIHGRIS-SWMWDL-GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT  521 (892)
Q Consensus       444 s~n~l~~~~~-~~~~~l-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  521 (892)
                      +.+.+  .+| .++... ...                                +++.|++++|.+....  ....+++|+
T Consensus       313 ~~~~~--~~p~~~~~~~~~~~--------------------------------~L~~L~l~~n~~~~~~--~~~~l~~L~  356 (562)
T 3a79_B          313 KNQVF--LFSKEALYSVFAEM--------------------------------NIKMLSISDTPFIHMV--CPPSPSSFT  356 (562)
T ss_dssp             EECCC--SSCHHHHHHHHHTC--------------------------------CCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred             cccee--ecChhhhhhhhccC--------------------------------cceEEEccCCCccccc--CccCCCCce
Confidence            44444  222 111110 002                                3555555555554221  114677888


Q ss_pred             EEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCC--cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519          522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN--FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL  599 (892)
Q Consensus       522 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  599 (892)
                      +|++++|++++.+|..+.++++|++|++++|++++.  +|..+..+++|++|++++|++++.+|... +..+++|++|++
T Consensus       357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~~l~~L~~L~l  435 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWAESILVLNL  435 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCCTTCCEEEC
T ss_pred             EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh-hcCcccCCEEEC
Confidence            999999998888888888899999999999998873  35678889999999999999988666542 277899999999


Q ss_pred             CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519          600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV  679 (892)
Q Consensus       600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~  679 (892)
                      ++|++++.+|..+                                              .+.|+.|+|++|+++ .+|..
T Consensus       436 ~~n~l~~~~~~~l----------------------------------------------~~~L~~L~L~~N~l~-~ip~~  468 (562)
T 3a79_B          436 SSNMLTGSVFRCL----------------------------------------------PPKVKVLDLHNNRIM-SIPKD  468 (562)
T ss_dssp             CSSCCCGGGGSSC----------------------------------------------CTTCSEEECCSSCCC-CCCTT
T ss_pred             CCCCCCcchhhhh----------------------------------------------cCcCCEEECCCCcCc-ccChh
Confidence            9999987666432                                              257899999999999 78888


Q ss_pred             hcCccccccccccCCCCCCCCcchh-ccCCCCCCeeeCCCCcCCCCCc
Q 047519          680 VGKLNLLKGLNNISHNNLTGDIPSL-LRNLTEVESLDLSSNMLVGHIP  726 (892)
Q Consensus       680 ~~~l~~L~~L~~Ls~N~l~~~ip~~-l~~l~~L~~L~Ls~N~l~~~ip  726 (892)
                      +.++++|+.|+ |++|+|+ .+|.. |+.+++|+.|+|++|.+.+..|
T Consensus       469 ~~~l~~L~~L~-L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          469 VTHLQALQELN-VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTSSCCCSEEE-CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hcCCCCCCEEE-CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            88999999998 9999999 56665 9999999999999999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.4e-39  Score=369.99  Aligned_cols=429  Identities=19%  Similarity=0.215  Sum_probs=209.0

Q ss_pred             CccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcc
Q 047519           85 SLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTT  164 (892)
Q Consensus        85 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~  164 (892)
                      .-.+.++|++|++++|.+ +. +|+.|+++++|++|++++|.+.|.+|.+++  ++.+|+++++..+.            
T Consensus         6 ~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~l~l~~c~------------   69 (454)
T 1jl5_A            6 RNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCL------------   69 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSC--CCHHHHHHHHHHHH------------
T ss_pred             cccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccc--cchhcchhhhhhhh------------
Confidence            344568899999999999 44 899999999999999999999999999998  88888777775533            


Q ss_pred             cCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcc
Q 047519          165 FLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEIC  244 (892)
Q Consensus       165 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~  244 (892)
                         ..++++|++++|.+.+...   ..  ++|++|++++|  .+++ +|                ..   +++|++|+++
T Consensus        70 ---~~~l~~L~l~~~~l~~lp~---~~--~~L~~L~l~~n--~l~~-lp----------------~~---~~~L~~L~l~  119 (454)
T 1jl5_A           70 ---DRQAHELELNNLGLSSLPE---LP--PHLESLVASCN--SLTE-LP----------------EL---PQSLKSLLVD  119 (454)
T ss_dssp             ---HHTCSEEECTTSCCSCCCS---CC--TTCSEEECCSS--CCSS-CC----------------CC---CTTCCEEECC
T ss_pred             ---ccCCCEEEecCCccccCCC---Cc--CCCCEEEccCC--cCCc-cc----------------cc---cCCCcEEECC
Confidence               1345666666665544211   12  45566666665  5544 33                21   2455555555


Q ss_pred             cCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceee
Q 047519          245 RNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKA  324 (892)
Q Consensus       245 ~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~  324 (892)
                      +|.+.+                      +|.  +  .++|++|++++|.+++ +|                         
T Consensus       120 ~n~l~~----------------------l~~--~--~~~L~~L~L~~n~l~~-lp-------------------------  147 (454)
T 1jl5_A          120 NNNLKA----------------------LSD--L--PPLLEYLGVSNNQLEK-LP-------------------------  147 (454)
T ss_dssp             SSCCSC----------------------CCS--C--CTTCCEEECCSSCCSS-CC-------------------------
T ss_pred             CCccCc----------------------ccC--C--CCCCCEEECcCCCCCC-Cc-------------------------
Confidence            553331                      000  0  0345555555555443 33                         


Q ss_pred             ccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCc
Q 047519          325 VKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST  404 (892)
Q Consensus       325 ~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  404 (892)
                        .+       +++++|++|++++|++++ +|..+   ++|++|++++|.+++ +|  .+.++++|++|++++|+  +.+
T Consensus       148 --~~-------~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~--l~~  209 (454)
T 1jl5_A          148 --EL-------QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNS--LKK  209 (454)
T ss_dssp             --CC-------TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSC--CSS
T ss_pred             --cc-------CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCc--CCc
Confidence              44       444555555555555543 33322   355566666665553 33  35555666666666652  222


Q ss_pred             cccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCC
Q 047519          405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTN  484 (892)
Q Consensus       405 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~  484 (892)
                       ++.  ..++|++|++++|.++.+|. ++.+++|++|++++|++++ +|..   .  ++|+.|++++|++++... .+  
T Consensus       210 -l~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~--~~L~~L~l~~N~l~~l~~-~~--  276 (454)
T 1jl5_A          210 -LPD--LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---P--PSLEALNVRDNYLTDLPE-LP--  276 (454)
T ss_dssp             -CCC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---C--TTCCEEECCSSCCSCCCC-CC--
T ss_pred             -CCC--CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---c--cccCEEECCCCcccccCc-cc--
Confidence             111  12466666666666666663 6677777777777777764 3332   2  667777777777776322 11  


Q ss_pred             CCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC-CCCcEEEccCCCCCCCcchhcc
Q 047519          485 MTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC-HHLEVLDVGNNQINDNFPNWLE  563 (892)
Q Consensus       485 l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~  563 (892)
                               ++|+.|++++|.+++. |..   .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..  
T Consensus       277 ---------~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--  335 (454)
T 1jl5_A          277 ---------QSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--  335 (454)
T ss_dssp             ---------TTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--
T ss_pred             ---------CcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--
Confidence                     2667777777777752 211   2578888888888874 22    22 578888898888887 5543  


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC--cCCcchhhhhhhhhcccCCCccccccCCCCCCCcc
Q 047519          564 ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG--VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY  641 (892)
Q Consensus       564 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~  641 (892)
                       +++|++|++++|++++ +|.     .+++|++|++++|++++  .+|..+                             
T Consensus       336 -~~~L~~L~L~~N~l~~-lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l-----------------------------  379 (454)
T 1jl5_A          336 -PPRLERLIASFNHLAE-VPE-----LPQNLKQLHVEYNPLREFPDIPESV-----------------------------  379 (454)
T ss_dssp             -CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSSCCCCCTTC-----------------------------
T ss_pred             -CCcCCEEECCCCcccc-ccc-----hhhhccEEECCCCCCCcCCCChHHH-----------------------------
Confidence             5788999999998874 554     25789999999999987  555431                             


Q ss_pred             ceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCC--CcchhccCCCCCCeeeCCCC
Q 047519          642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTG--DIPSLLRNLTEVESLDLSSN  719 (892)
Q Consensus       642 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N  719 (892)
                                           .  +++.|++.|.+|..   +++|+.|+ +++|++++  .+|.      +++.|.+.+|
T Consensus       380 ---------------------~--~L~~n~~~~~i~~~---~~~L~~L~-ls~N~l~~~~~iP~------sl~~L~~~~~  426 (454)
T 1jl5_A          380 ---------------------E--DLRMNSHLAEVPEL---PQNLKQLH-VETNPLREFPDIPE------SVEDLRMNSE  426 (454)
T ss_dssp             ---------------------C--EEECCC--------------------------------------------------
T ss_pred             ---------------------H--hhhhcccccccccc---cCcCCEEE-CCCCcCCccccchh------hHhheeCcCc
Confidence                                 1  22345666667663   46778887 88888886  5664      3566778888


Q ss_pred             cCCCCCccccCCC
Q 047519          720 MLVGHIPTQLTSL  732 (892)
Q Consensus       720 ~l~~~ip~~l~~l  732 (892)
                      .+.+.+|.+....
T Consensus       427 ~~~~~~~~~~~~~  439 (454)
T 1jl5_A          427 RVVDPYEFAHETT  439 (454)
T ss_dssp             -------------
T ss_pred             ccCCccccCHHHh
Confidence            8887776655443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.9e-39  Score=367.47  Aligned_cols=341  Identities=18%  Similarity=0.163  Sum_probs=186.4

Q ss_pred             CCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCcccccccCCCC
Q 047519          113 QLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQ  192 (892)
Q Consensus       113 ~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~  192 (892)
                      +.++|++|++++|.+ |.+|++++  ++++|++|+++++...+.+|..++    ++++|+.+++..|..           
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~--~L~~L~~L~l~~n~~~~~~p~~~~----~l~~L~~l~l~~c~~-----------   70 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNG----EQREMAVSRLRDCLD-----------   70 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSC----CCHHHHHHHHHHHHH-----------
T ss_pred             ccccchhhhcccCch-hhCChhHh--cccchhhhhccCCcccccCCcccc----cchhcchhhhhhhhc-----------
Confidence            468999999999999 89999999  888888888888776777777777    676666666655542           


Q ss_pred             CCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceee
Q 047519          193 EESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGY  272 (892)
Q Consensus       193 ~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~  272 (892)
                       .++++|++++|  .+++ +|                .                                          
T Consensus        71 -~~l~~L~l~~~--~l~~-lp----------------~------------------------------------------   88 (454)
T 1jl5_A           71 -RQAHELELNNL--GLSS-LP----------------E------------------------------------------   88 (454)
T ss_dssp             -HTCSEEECTTS--CCSC-CC----------------S------------------------------------------
T ss_pred             -cCCCEEEecCC--cccc-CC----------------C------------------------------------------
Confidence             45566666666  4433 12                0                                          


Q ss_pred             cChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCC
Q 047519          273 VDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLS  352 (892)
Q Consensus       273 ~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~  352 (892)
                             -.++|++|++++|.+++ +|..   +++|++|+++   +|.+.+ +|.+         .++|++|++++|.++
T Consensus        89 -------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~---~n~l~~-l~~~---------~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           89 -------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVD---NNNLKA-LSDL---------PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             -------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECC---SSCCSC-CCSC---------CTTCCEEECCSSCCS
T ss_pred             -------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECC---CCccCc-ccCC---------CCCCCEEECcCCCCC
Confidence                   01345555555555554 4432   2566666666   665543 2211         257778888888887


Q ss_pred             cCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhh
Q 047519          353 GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDIL  432 (892)
Q Consensus       353 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l  432 (892)
                      + +| +++++++|++|++++|++++ +| .   ..++|++|++++|  .+.+ ++....+++|++|++++|.++.+|.. 
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp-~---~~~~L~~L~L~~n--~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~-  213 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LP-D---LPPSLEFIAAGNN--QLEE-LPELQNLPFLTAIYADNNSLKKLPDL-  213 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CC-C---CCTTCCEEECCSS--CCSS-CCCCTTCTTCCEEECCSSCCSSCCCC-
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cC-C---CcccccEEECcCC--cCCc-CccccCCCCCCEEECCCCcCCcCCCC-
Confidence            5 66 58888888888888888874 44 2   2357888888888  4333 34333677777777777777766643 


Q ss_pred             hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc
Q 047519          433 RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ  512 (892)
Q Consensus       433 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~  512 (892)
                        .++|++|++++|.+. .+|. +..+  ++|++|++++|++++... .+           ++|+.|++++|.+++ +|.
T Consensus       214 --~~~L~~L~l~~n~l~-~lp~-~~~l--~~L~~L~l~~N~l~~l~~-~~-----------~~L~~L~l~~N~l~~-l~~  274 (454)
T 1jl5_A          214 --PLSLESIVAGNNILE-ELPE-LQNL--PFLTTIYADNNLLKTLPD-LP-----------PSLEALNVRDNYLTD-LPE  274 (454)
T ss_dssp             --CTTCCEEECCSSCCS-SCCC-CTTC--TTCCEEECCSSCCSSCCS-CC-----------TTCCEEECCSSCCSC-CCC
T ss_pred             --cCcccEEECcCCcCC-cccc-cCCC--CCCCEEECCCCcCCcccc-cc-----------cccCEEECCCCcccc-cCc
Confidence              246777777777776 4553 5555  677777777777665322 11           155666666666654 332


Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCC-CCCCEEEccCCcCCCCCCCCCCCcCC
Q 047519          513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEIL-PELQVLILRSNRFWGPIGDNTTIVPF  591 (892)
Q Consensus       513 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l  591 (892)
                      .   +++|++|++++|++++ +|..   .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..     +
T Consensus       275 ~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~-----~  336 (454)
T 1jl5_A          275 L---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL-----P  336 (454)
T ss_dssp             C---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC-----C
T ss_pred             c---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc-----C
Confidence            2   2456666666666553 1111   1455666666665554 11    12 355555555555544 3321     3


Q ss_pred             CCccEEEcCCCCCc
Q 047519          592 PRFRIIDLSHNEFT  605 (892)
Q Consensus       592 ~~L~~L~Ls~N~l~  605 (892)
                      ++|++|++++|+++
T Consensus       337 ~~L~~L~L~~N~l~  350 (454)
T 1jl5_A          337 PRLERLIASFNHLA  350 (454)
T ss_dssp             TTCCEEECCSSCCS
T ss_pred             CcCCEEECCCCccc
Confidence            45555555555555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.8e-40  Score=354.90  Aligned_cols=293  Identities=23%  Similarity=0.328  Sum_probs=225.5

Q ss_pred             CCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCcc--ccceEecCCC--CeEEEEECCCCCCCC-
Q 047519            4 KLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCS--WDGVTCDTVA--GHVIGLDLSCSWLHG-   78 (892)
Q Consensus         4 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~g-   78 (892)
                      ..|.++|++||++||+++.++               ..+++|..+.+||.  |+||+|+..+  ++|+.|+|+++.+.| 
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~---------------~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~   65 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNP---------------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP   65 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCC---------------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSC
T ss_pred             CCCCHHHHHHHHHHHHhcCCc---------------ccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCC
Confidence            369999999999999999654               26899988889999  9999998765  899999999999998 


Q ss_pred             -CCCCCCCccCCCCCCeEecCC-CCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcc
Q 047519           79 -NIPSNSSLFFLPHIRKLNLAF-NDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDC  156 (892)
Q Consensus        79 -~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~  156 (892)
                       .++.  ++..+++|++|+|++ |.+.+. +|+.|+++++|++|+|++|.+.+.+|..++  ++++|++|+++++.+.+.
T Consensus        66 ~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~  140 (313)
T 1ogq_A           66 YPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGT  140 (313)
T ss_dssp             EECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESC
T ss_pred             cccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHh--CCCCCCEEeCCCCccCCc
Confidence             7877  899999999999995 888876 888899999999999999999888888887  555555555554443444


Q ss_pred             hhhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCC
Q 047519          157 FQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAK  236 (892)
Q Consensus       157 ~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~  236 (892)
                      +|..+                           ..+  ++|++|++++|  .+++.+|                ..++.++
T Consensus       141 ~p~~~---------------------------~~l--~~L~~L~L~~N--~l~~~~p----------------~~l~~l~  173 (313)
T 1ogq_A          141 LPPSI---------------------------SSL--PNLVGITFDGN--RISGAIP----------------DSYGSFS  173 (313)
T ss_dssp             CCGGG---------------------------GGC--TTCCEEECCSS--CCEEECC----------------GGGGCCC
T ss_pred             CChHH---------------------------hcC--CCCCeEECcCC--cccCcCC----------------HHHhhhh
Confidence            44444                           344  55555556666  5555555                5556665


Q ss_pred             -CCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCc
Q 047519          237 -KILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTE  315 (892)
Q Consensus       237 -~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  315 (892)
                       +|++|++++|                     .+.+.+|. .+..++ |++|++++|.+++..|..+..+++|+.|+++ 
T Consensus       174 ~~L~~L~L~~N---------------------~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-  229 (313)
T 1ogq_A          174 KLFTSMTISRN---------------------RLTGKIPP-TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA-  229 (313)
T ss_dssp             TTCCEEECCSS---------------------EEEEECCG-GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC-
T ss_pred             hcCcEEECcCC---------------------eeeccCCh-HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC-
Confidence             6666666665                     33444455 666665 7888888888877777778888888888888 


Q ss_pred             cccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEc
Q 047519          316 AEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFV  395 (892)
Q Consensus       316 ~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  395 (892)
                        +|.+++.+|.+       ..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+| .. ..+++|+.|++
T Consensus       230 --~N~l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~~-~~l~~L~~l~l  298 (313)
T 1ogq_A          230 --KNSLAFDLGKV-------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG-GNLQRFDVSAY  298 (313)
T ss_dssp             --SSEECCBGGGC-------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CS-TTGGGSCGGGT
T ss_pred             --CCceeeecCcc-------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC-CC-ccccccChHHh
Confidence              88887777766       777888888888888888888888888888888888888887777 33 67778888888


Q ss_pred             ccC
Q 047519          396 SNN  398 (892)
Q Consensus       396 s~n  398 (892)
                      ++|
T Consensus       299 ~~N  301 (313)
T 1ogq_A          299 ANN  301 (313)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.3e-38  Score=358.70  Aligned_cols=392  Identities=16%  Similarity=0.154  Sum_probs=271.5

Q ss_pred             EEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCC-CccccCCC
Q 047519          286 SITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSI-PSSVYELE  363 (892)
Q Consensus       286 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~  363 (892)
                      .++.+++.++ .+|. +  .++|++|+++   +|.+.+..| .+       .++++|++|++++|.+.+.+ +..|.+++
T Consensus        14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls---~n~i~~~~~~~~-------~~l~~L~~L~L~~n~~~~~i~~~~~~~l~   79 (455)
T 3v47_A           14 NAICINRGLH-QVPE-L--PAHVNYVDLS---LNSIAELNETSF-------SRLQDLQFLKVEQQTPGLVIRNNTFRGLS   79 (455)
T ss_dssp             EEECCSSCCS-SCCC-C--CTTCCEEECC---SSCCCEECTTTT-------SSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred             ccCcCCCCcc-cCCC-C--CCccCEEEec---CCccCcCChhHh-------ccCccccEEECcCCcccceECcccccccc
Confidence            3445555444 3343 2  1456666666   666665555 56       66666666666666665433 44566666


Q ss_pred             CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCC--C-CCCCccEEEccCCCCCCc-chh-hhCCCCc
Q 047519          364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN--S-SFPNLFGLGLSACNISEF-PDI-LRTLHQL  438 (892)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~-~l~~L~~L~L~~n~l~~l-p~~-l~~l~~L  438 (892)
                      +|++|++++|.+++..| ..|.++++|++|++++|  .+.+..+..  + .+++|++|++++|.++.+ |.. +..+++|
T Consensus        80 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           80 SLIILKLDYNQFLQLET-GAFNGLANLEVLTLTQC--NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCCEEECTTCTTCEECT-TTTTTCTTCCEEECTTS--CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             cCCEEeCCCCccCccCh-hhccCcccCCEEeCCCC--CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            66666666666665444 56666666666666666  333322221  2 566677777777777644 443 7788888


Q ss_pred             cEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCC-
Q 047519          439 QWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS-  517 (892)
Q Consensus       439 ~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l-  517 (892)
                      ++|++++|.+.+..+..+..+...+|+.|++++|.+.+..+..+.....-.+..+++|++|++++|.+++..|..+... 
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence            8888888888877777776654467888888888887765543221000001122367777787777777766655443 


Q ss_pred             --CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc--CCCCCCEEEccCCcCCCCCCCCCCCcCCCC
Q 047519          518 --CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE--ILPELQVLILRSNRFWGPIGDNTTIVPFPR  593 (892)
Q Consensus       518 --~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  593 (892)
                        ++|+.|++++|.+.+...              ..+.+.+..+..+.  ..++|++|++++|.+.+..|..+  ..+++
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~  300 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF--SHFTD  300 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT--TTCTT
T ss_pred             cccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhc--ccCCC
Confidence              677777777776653211              12222222222333  24688999999999888877776  78889


Q ss_pred             ccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC
Q 047519          594 FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ  673 (892)
Q Consensus       594 L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  673 (892)
                      |++|++++|++++..|..+ .+                                           ++.|+.|+|++|+++
T Consensus       301 L~~L~Ls~n~l~~~~~~~~-~~-------------------------------------------l~~L~~L~Ls~N~l~  336 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAF-WG-------------------------------------------LTHLLKLNLSQNFLG  336 (455)
T ss_dssp             CCEEECTTSCCCEECTTTT-TT-------------------------------------------CTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcccccChhHh-cC-------------------------------------------cccCCEEECCCCccC
Confidence            9999999999987666442 11                                           577899999999999


Q ss_pred             CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC
Q 047519          674 GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS  753 (892)
Q Consensus       674 ~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  753 (892)
                      +..|..++++++|++|+ |++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|+++|.+|...
T Consensus       337 ~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLD-LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             EECGGGGTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CcChhHhcCcccCCEEE-CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            88899999999999998 99999998889999999999999999999998777788999999999999999999999654


Q ss_pred             CC
Q 047519          754 QF  755 (892)
Q Consensus       754 ~~  755 (892)
                      .+
T Consensus       416 ~l  417 (455)
T 3v47_A          416 YL  417 (455)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.1e-36  Score=345.09  Aligned_cols=357  Identities=18%  Similarity=0.123  Sum_probs=276.1

Q ss_pred             CcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeec
Q 047519          194 ESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYV  273 (892)
Q Consensus       194 ~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~  273 (892)
                      ++|++|+|++|  .+++..|                ..++++++|++|++++|.+.+                     .+
T Consensus        30 ~~l~~L~Ls~n--~i~~~~~----------------~~~~~l~~L~~L~L~~n~~~~---------------------~i   70 (455)
T 3v47_A           30 AHVNYVDLSLN--SIAELNE----------------TSFSRLQDLQFLKVEQQTPGL---------------------VI   70 (455)
T ss_dssp             TTCCEEECCSS--CCCEECT----------------TTTSSCTTCCEEECCCCSTTC---------------------EE
T ss_pred             CccCEEEecCC--ccCcCCh----------------hHhccCccccEEECcCCcccc---------------------eE
Confidence            55666666666  6655555                566666677777776664432                     33


Q ss_pred             ChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc---chhhhhhccCCCCCcCEEEccCCc
Q 047519          274 DSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK---EAIWLQVFVRGRRHYAEPHFSSNQ  350 (892)
Q Consensus       274 p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p---~l~~l~l~~~~l~~L~~L~Ls~n~  350 (892)
                      +...+.++++|++|++++|.+++..|..++++++|++|+++   +|.+.+.+|   .+       ..+++|++|++++|.
T Consensus        71 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~~~-------~~l~~L~~L~L~~n~  140 (455)
T 3v47_A           71 RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT---QCNLDGAVLSGNFF-------KPLTSLEMLVLRDNN  140 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT---TSCCBTHHHHSSTT-------TTCTTCCEEECCSSB
T ss_pred             CcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC---CCCCCccccCcccc-------cCcccCCEEECCCCc
Confidence            22256777888888888888877777778888888888888   888776555   37       778888888888888


Q ss_pred             CCcCCCcc-ccCCCCCCEEECcCCcCCCccChhhcCCC--CCCCEEEcccCCCCCCccccC-------CCCCCCccEEEc
Q 047519          351 LSGSIPSS-VYELENLILLRLPSNRLSGTTELYDFAKL--KNLKWLFVSNNRLSLSTKLKV-------NSSFPNLFGLGL  420 (892)
Q Consensus       351 l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~-------~~~l~~L~~L~L  420 (892)
                      +++..|.. +.++++|++|++++|.+++..+ ..+..+  .+|+.|++++|.+........       ...+++|++|++
T Consensus       141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L  219 (455)
T 3v47_A          141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL  219 (455)
T ss_dssp             CCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred             cCccCcccccCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence            88776765 7788888888888888876655 555554  678888888884332221111       124578999999


Q ss_pred             cCCCCC-CcchhhhCC---CCccEEEccCCCCCCC----------CchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCC
Q 047519          421 SACNIS-EFPDILRTL---HQLQWFNLSKNRIHGR----------ISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMT  486 (892)
Q Consensus       421 ~~n~l~-~lp~~l~~l---~~L~~L~Ls~n~l~~~----------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~  486 (892)
                      ++|.++ .+|..+...   ++|+.|++++|.+.+.          .+..+..+..++|+.|++++|.+++..|..+..++
T Consensus       220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  299 (455)
T 3v47_A          220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT  299 (455)
T ss_dssp             TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC
Confidence            999888 566555443   7899999998865432          22333333347899999999999999888877776


Q ss_pred             eeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCC
Q 047519          487 QLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILP  566 (892)
Q Consensus       487 ~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  566 (892)
                              +|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|.+|..++
T Consensus       300 --------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          300 --------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             --------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             --------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence                    899999999999998899999999999999999999988889999999999999999999998899999999


Q ss_pred             CCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCc
Q 047519          567 ELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT  610 (892)
Q Consensus       567 ~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  610 (892)
                      +|++|++++|++++..+..+  ..+++|++|++++|++++.+|.
T Consensus       372 ~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          372 NLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             TCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence            99999999999988666655  7899999999999999999883

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.4e-35  Score=335.46  Aligned_cols=356  Identities=17%  Similarity=0.129  Sum_probs=257.9

Q ss_pred             hhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCC
Q 047519          277 YIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIP  356 (892)
Q Consensus       277 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p  356 (892)
                      .++++++|++|++++|.+++. | .++.+++|++|+++   +|.+++. | +       +.+++|++|++++|.+++. |
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls---~n~l~~~-~-~-------~~l~~L~~L~Ls~N~l~~~-~  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICT---SNNITTL-D-L-------SQNTNLTYLACDSNKLTNL-D  101 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECC---SSCCSCC-C-C-------TTCTTCSEEECCSSCCSCC-C
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEcc---CCcCCeE-c-c-------ccCCCCCEEECcCCCCcee-e
Confidence            567788888888888888764 4 57788888888888   8877653 3 5       7778888888888888754 3


Q ss_pred             ccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCC-CCCcchhhhCC
Q 047519          357 SSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACN-ISEFPDILRTL  435 (892)
Q Consensus       357 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l  435 (892)
                        ++++++|++|++++|++++ ++   +..+++|++|++++|  .+.+. + ...+++|++|++++|. +..+  .+..+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N--~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l  169 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARN--TLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQ  169 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTS--CCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred             --cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCC--cccee-c-cccCCcCCEEECCCCCccccc--ccccC
Confidence              7778888888888888775 33   677788888888888  33332 2 2267777777777773 3355  25667


Q ss_pred             CCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccccc
Q 047519          436 HQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV  515 (892)
Q Consensus       436 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~  515 (892)
                      ++|++|++++|++++ +|  +..+  ++|+.|++++|++++..   +..        +++|+.|++++|++++ +|  +.
T Consensus       170 ~~L~~L~ls~n~l~~-l~--l~~l--~~L~~L~l~~N~l~~~~---l~~--------l~~L~~L~Ls~N~l~~-ip--~~  230 (457)
T 3bz5_A          170 TQLTTLDCSFNKITE-LD--VSQN--KLLNRLNCDTNNITKLD---LNQ--------NIQLTFLDCSSNKLTE-ID--VT  230 (457)
T ss_dssp             TTCCEEECCSSCCCC-CC--CTTC--TTCCEEECCSSCCSCCC---CTT--------CTTCSEEECCSSCCSC-CC--CT
T ss_pred             CcCCEEECCCCccce-ec--cccC--CCCCEEECcCCcCCeec---ccc--------CCCCCEEECcCCcccc-cC--cc
Confidence            777777777777775 33  4444  77777777777776641   222        2367777777777776 34  66


Q ss_pred             CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519          516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR  595 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  595 (892)
                      .+++|++|++++|++++..   +..+++|+.|++++|              +|+.|++++|.+.+.+|.    ..+++|+
T Consensus       231 ~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~  289 (457)
T 3bz5_A          231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIK  289 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCC
T ss_pred             ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCC
Confidence            6777777777777777542   345666777776654              456677888887777763    5688999


Q ss_pred             EEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC
Q 047519          596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG  675 (892)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  675 (892)
                      .|++++|.+.+.+|..    ...+..++++.                                .+.|+.|++++|++++.
T Consensus       290 ~L~Ls~n~~l~~l~~~----~~~L~~L~l~~--------------------------------~~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          290 ELDVTHNTQLYLLDCQ----AAGITELDLSQ--------------------------------NPKLVYLYLNNTELTEL  333 (457)
T ss_dssp             CCCCTTCTTCCEEECT----TCCCSCCCCTT--------------------------------CTTCCEEECTTCCCSCC
T ss_pred             EEECCCCcccceeccC----CCcceEechhh--------------------------------cccCCEEECCCCccccc
Confidence            9999999988888743    23333333322                                46799999999999974


Q ss_pred             ChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519          676 IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG  752 (892)
Q Consensus       676 ~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  752 (892)
                       +  ++++++|+.|+ +++|+|++        ++.|+.|++++|.++|.     ..+..|..+++++|+++|.||..
T Consensus       334 -~--l~~l~~L~~L~-l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          334 -D--VSHNTKLKSLS-CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             -C--CTTCTTCSEEE-CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             -c--cccCCcCcEEE-CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence             3  89999999998 99999996        35677889999999976     34567888999999999999974

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.3e-34  Score=327.45  Aligned_cols=316  Identities=19%  Similarity=0.179  Sum_probs=205.6

Q ss_pred             hcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCc
Q 047519          278 IGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPS  357 (892)
Q Consensus       278 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~  357 (892)
                      ++.+++|++|++++|.+++. |  ++++++|++|+++   +|.+++ +| +       +.+++|++|++++|.+++. + 
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~---~N~l~~-l~-~-------~~l~~L~~L~l~~N~l~~l-~-  143 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD---TNKLTK-LD-V-------SQNPLLTYLNCARNTLTEI-D-  143 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC---SSCCSC-CC-C-------TTCTTCCEEECTTSCCSCC-C-
T ss_pred             cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC---CCcCCe-ec-C-------CCCCcCCEEECCCCcccee-c-
Confidence            44566677777777776653 2  6667777777777   776655 33 5       6677777777777777753 2 


Q ss_pred             cccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCC
Q 047519          358 SVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQ  437 (892)
Q Consensus       358 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~  437 (892)
                       ++.+++|++|++++|...+.++   +..+++|++|++++|  .+.+ ++ ...+++|+.|++++|+++.++  ++.+++
T Consensus       144 -l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n--~l~~-l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~  213 (457)
T 3bz5_A          144 -VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN--KITE-LD-VSQNKLLNRLNCDTNNITKLD--LNQNIQ  213 (457)
T ss_dssp             -CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS--CCCC-CC-CTTCTTCCEEECCSSCCSCCC--CTTCTT
T ss_pred             -cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC--ccce-ec-cccCCCCCEEECcCCcCCeec--cccCCC
Confidence             6677777777777775444443   566777777777777  3333 22 236777777777777777663  677788


Q ss_pred             ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCC
Q 047519          438 LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS  517 (892)
Q Consensus       438 L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l  517 (892)
                      |++|++++|++++ +|  +..+  ++|+.|++++|++++.++..+++++           .|+++.|             
T Consensus       214 L~~L~Ls~N~l~~-ip--~~~l--~~L~~L~l~~N~l~~~~~~~l~~L~-----------~L~l~~n-------------  264 (457)
T 3bz5_A          214 LTFLDCSSNKLTE-ID--VTPL--TQLTYFDCSVNPLTELDVSTLSKLT-----------TLHCIQT-------------  264 (457)
T ss_dssp             CSEEECCSSCCSC-CC--CTTC--TTCSEEECCSSCCSCCCCTTCTTCC-----------EEECTTC-------------
T ss_pred             CCEEECcCCcccc-cC--cccc--CCCCEEEeeCCcCCCcCHHHCCCCC-----------EEeccCC-------------
Confidence            8888888888876 44  5555  7788888888888776555554444           3443332             


Q ss_pred             CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEE
Q 047519          518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRII  597 (892)
Q Consensus       518 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  597 (892)
                       +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|.   ..++|+.|++++|               ++|++|
T Consensus       265 -~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------~~L~~L  323 (457)
T 3bz5_A          265 -DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------PKLVYL  323 (457)
T ss_dssp             -CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---------------TTCCEE
T ss_pred             -CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc---------------ccCCEE
Confidence             34455566666555554  34566677777777766665553   2344555544333               567777


Q ss_pred             EcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCCh
Q 047519          598 DLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP  677 (892)
Q Consensus       598 ~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  677 (892)
                      ++++|++++. +   +++                                           ++.|+.||+++|++++   
T Consensus       324 ~L~~N~l~~l-~---l~~-------------------------------------------l~~L~~L~l~~N~l~~---  353 (457)
T 3bz5_A          324 YLNNTELTEL-D---VSH-------------------------------------------NTKLKSLSCVNAHIQD---  353 (457)
T ss_dssp             ECTTCCCSCC-C---CTT-------------------------------------------CTTCSEEECCSSCCCB---
T ss_pred             ECCCCccccc-c---ccc-------------------------------------------CCcCcEEECCCCCCCC---
Confidence            7777777753 2   111                                           5567778888887774   


Q ss_pred             hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519          678 EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS  731 (892)
Q Consensus       678 ~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  731 (892)
                           ++.|..|+ +++|+++|.     +++..|+.+++++|+++|.+|..+..
T Consensus       354 -----l~~L~~L~-l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          354 -----FSSVGKIP-ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             -----CTTGGGSS-GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             -----cccccccc-ccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence                 24566777 888888865     35567788888888888888876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.7e-34  Score=328.39  Aligned_cols=346  Identities=23%  Similarity=0.301  Sum_probs=235.3

Q ss_pred             CCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccc
Q 047519          280 DLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSV  359 (892)
Q Consensus       280 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l  359 (892)
                      .+++++.|++.++.+.. +| .+..+++|++|+++   +|.+.+..| +       .++++|++|++++|.+++..+  +
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls---~n~l~~~~~-~-------~~l~~L~~L~l~~n~l~~~~~--~  108 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFS---NNQLTDITP-L-------KNLTKLVDILMNNNQIADITP--L  108 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECC---SSCCCCCGG-G-------TTCTTCCEEECCSSCCCCCGG--G
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECC---CCccCCchh-h-------hccccCCEEECCCCccccChh--h
Confidence            35677888888877764 44 36677777777777   777665444 6       677777777777777764433  6


Q ss_pred             cCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCcc
Q 047519          360 YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQ  439 (892)
Q Consensus       360 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~  439 (892)
                      .++++|++|++++|.+++. +  .+..+++|++|++++|.+  .+ ++....+++|++|+++ |.+..++. +..+++|+
T Consensus       109 ~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~~n~l--~~-~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~  180 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQITDI-D--PLKNLTNLNRLELSSNTI--SD-ISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLE  180 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCC-G--GGTTCTTCSEEEEEEEEE--CC-CGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCC
T ss_pred             cCCCCCCEEECCCCCCCCC-h--HHcCCCCCCEEECCCCcc--CC-ChhhccCCcccEeecC-CcccCchh-hccCCCCC
Confidence            7777777777777777643 2  266677777777777632  22 2222245555555554 33333322 44555555


Q ss_pred             EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519          440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN  519 (892)
Q Consensus       440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  519 (892)
                      +|++++|.+.+. + .+..+  +                                +|++|++++|.+.+..|  ++.+++
T Consensus       181 ~L~l~~n~l~~~-~-~l~~l--~--------------------------------~L~~L~l~~n~l~~~~~--~~~l~~  222 (466)
T 1o6v_A          181 RLDISSNKVSDI-S-VLAKL--T--------------------------------NLESLIATNNQISDITP--LGILTN  222 (466)
T ss_dssp             EEECCSSCCCCC-G-GGGGC--T--------------------------------TCSEEECCSSCCCCCGG--GGGCTT
T ss_pred             EEECcCCcCCCC-h-hhccC--C--------------------------------CCCEEEecCCccccccc--ccccCC
Confidence            555555554432 1 12332  3                                55555555555554444  555677


Q ss_pred             CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519          520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL  599 (892)
Q Consensus       520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  599 (892)
                      |++|++++|++++ + ..+..+++|++|++++|++++..|  +..+++|+.|++++|.+++..+  +  ..+++|+.|++
T Consensus       223 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L  294 (466)
T 1o6v_A          223 LDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L--AGLTALTNLEL  294 (466)
T ss_dssp             CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G--TTCTTCSEEEC
T ss_pred             CCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c--cCCCccCeEEc
Confidence            7888888877774 3 356777888888888888877544  7778888888888888876544  2  67788888888


Q ss_pred             CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519          600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV  679 (892)
Q Consensus       600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~  679 (892)
                      ++|++++..|   +.                                           .+++|+.|++++|++++..|  
T Consensus       295 ~~n~l~~~~~---~~-------------------------------------------~l~~L~~L~L~~n~l~~~~~--  326 (466)
T 1o6v_A          295 NENQLEDISP---IS-------------------------------------------NLKNLTYLTLYFNNISDISP--  326 (466)
T ss_dssp             CSSCCSCCGG---GG-------------------------------------------GCTTCSEEECCSSCCSCCGG--
T ss_pred             CCCcccCchh---hc-------------------------------------------CCCCCCEEECcCCcCCCchh--
Confidence            8888875433   11                                           15678888899998887665  


Q ss_pred             hcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519          680 VGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                      +..+++|+.|+ +++|++++.  ..++++++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       327 ~~~l~~L~~L~-l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          327 VSSLTKLQRLF-FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGGCTTCCEEE-CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCccCCEeE-CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            77888999998 999999865  468889999999999999988776  8889999999999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.7e-34  Score=325.25  Aligned_cols=347  Identities=24%  Similarity=0.274  Sum_probs=271.5

Q ss_pred             CCCCcceec---ccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhc
Q 047519          258 LFEQDDTLG---QSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVF  334 (892)
Q Consensus       258 ~l~~L~~L~---~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~  334 (892)
                      .+++++.|+   +.+. .+|  .+..+++|++|++++|.+++..|  ++++++|++|+++   +|.+.+..| +      
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~---~n~l~~~~~-~------  108 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN---NNQIADITP-L------  108 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC---SSCCCCCGG-G------
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECC---CCccccChh-h------
Confidence            356677777   3333 354  47889999999999999987644  9999999999999   999987665 8      


Q ss_pred             cCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCC
Q 047519          335 VRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPN  414 (892)
Q Consensus       335 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  414 (892)
                       .++++|++|++++|.+++. +. +..+++|++|++++|.+++ ++  .+..+++|++|+++++   ..+ .+....+++
T Consensus       109 -~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~---~~~-~~~~~~l~~  178 (466)
T 1o6v_A          109 -ANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQ---VTD-LKPLANLTT  178 (466)
T ss_dssp             -TTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEES---CCC-CGGGTTCTT
T ss_pred             -cCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCc---ccC-chhhccCCC
Confidence             8999999999999999865 33 8999999999999999985 33  4899999999999754   222 233348999


Q ss_pred             ccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519          415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL  494 (892)
Q Consensus       415 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~  494 (892)
                      |++|++++|.++.++. +..+++|++|++++|.+.+..|  +..+  ++|+.|++++|.+++.                 
T Consensus       179 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l--~~L~~L~l~~n~l~~~-----------------  236 (466)
T 1o6v_A          179 LERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGIL--TNLDELSLNGNQLKDI-----------------  236 (466)
T ss_dssp             CCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGC--TTCCEEECCSSCCCCC-----------------
T ss_pred             CCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--cccc--CCCCEEECCCCCcccc-----------------
Confidence            9999999999998864 8899999999999999987665  4555  7788888887766542                 


Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                                       ..+..+++|++|++++|.+++..+  +..+++|++|++++|++++..+  +..+++|+.|+++
T Consensus       237 -----------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  295 (466)
T 1o6v_A          237 -----------------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  295 (466)
T ss_dssp             -----------------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             -----------------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence                             124456677777777777775433  6777777788888777777433  6777788888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|++.+..+    +..+++|+.|++++|++++..|.   .                                        
T Consensus       296 ~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~---~----------------------------------------  328 (466)
T 1o6v_A          296 ENQLEDISP----ISNLKNLTYLTLYFNNISDISPV---S----------------------------------------  328 (466)
T ss_dssp             SSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGG---G----------------------------------------
T ss_pred             CCcccCchh----hcCCCCCCEEECcCCcCCCchhh---c----------------------------------------
Confidence            888766544    26778888888888888765441   1                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ  728 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  728 (892)
                         .+++|+.|++++|++++.  ..+.++++|+.|+ +++|++++.+|  +.++++|+.|++++|++++ +|..
T Consensus       329 ---~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~-l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~  393 (466)
T 1o6v_A          329 ---SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS-AGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN  393 (466)
T ss_dssp             ---GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE-CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred             ---cCccCCEeECCCCccCCc--hhhccCCCCCEEe-CCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence               156788888899988864  4688899999998 99999998877  8899999999999999986 4443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.3e-35  Score=334.83  Aligned_cols=348  Identities=20%  Similarity=0.181  Sum_probs=259.6

Q ss_pred             CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEcc
Q 047519          342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS  421 (892)
Q Consensus       342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  421 (892)
                      +.++.+++.++ .+|..+.  +++++|+|++|.+++..+ ..|.++++|++|+|++|  .+.+..+              
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n--~i~~~~~--------------   73 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNEN--IVSAVEP--------------   73 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTS--CCCEECT--------------
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECH-hHccCCCCCCEEECCCC--ccCEeCh--------------
Confidence            56777777776 5665543  578888888888875544 67777777777777777  4334333              


Q ss_pred             CCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEEC
Q 047519          422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDM  501 (892)
Q Consensus       422 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L  501 (892)
                              ..|..+++|++|+|++|++++..+..+..+  ++|++|++++|.+++..+..+..+.        +|++|++
T Consensus        74 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~--------~L~~L~l  135 (477)
T 2id5_A           74 --------GAFNNLFNLRTLGLRSNRLKLIPLGVFTGL--SNLTKLDISENKIVILLDYMFQDLY--------NLKSLEV  135 (477)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCCSCCTTSSTTC--TTCCEEECTTSCCCEECTTTTTTCT--------TCCEEEE
T ss_pred             --------hhhhCCccCCEEECCCCcCCccCcccccCC--CCCCEEECCCCccccCChhHccccc--------cCCEEEC
Confidence                    344555555555555555554333344444  5555555555555555554444444        6677777


Q ss_pred             CCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC
Q 047519          502 RMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP  581 (892)
Q Consensus       502 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  581 (892)
                      ++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+.+.
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~  215 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT  215 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence            77777766677788888899999999998876667788899999999999999887777888899999999999988887


Q ss_pred             CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhh
Q 047519          582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTI  661 (892)
Q Consensus       582 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  661 (892)
                      +|...  ....+|+.|++++|+++ .+|...+.                                           .+++
T Consensus       216 ~~~~~--~~~~~L~~L~l~~n~l~-~~~~~~~~-------------------------------------------~l~~  249 (477)
T 2id5_A          216 MTPNC--LYGLNLTSLSITHCNLT-AVPYLAVR-------------------------------------------HLVY  249 (477)
T ss_dssp             ECTTT--TTTCCCSEEEEESSCCC-SCCHHHHT-------------------------------------------TCTT
T ss_pred             cCccc--ccCccccEEECcCCccc-ccCHHHhc-------------------------------------------Cccc
Confidence            77765  45568999999999998 44433222                                           1678


Q ss_pred             heeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECC
Q 047519          662 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS  741 (892)
Q Consensus       662 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  741 (892)
                      |+.|+|++|++++..+..+.++++|+.|+ |++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQ-LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEE-CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEE-CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            89999999999988888899999999999 99999999999999999999999999999998888889999999999999


Q ss_pred             CCcCcccCCCCCCCCcccCCccCCCCCCCCCCC
Q 047519          742 YNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPL  774 (892)
Q Consensus       742 ~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~  774 (892)
                      +|++++..+....+.......+.++...|..|.
T Consensus       329 ~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          329 SNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             SSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred             CCCccCccchHhHHhhhhccccCccCceeCCch
Confidence            999997765322222223355677777776553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=320.08  Aligned_cols=345  Identities=19%  Similarity=0.133  Sum_probs=226.9

Q ss_pred             cEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCC
Q 047519          309 VVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKL  387 (892)
Q Consensus       309 ~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l  387 (892)
                      +.++.+   ++.++ .+| .+         .+++++|++++|.+++..|..|.++++|++|+|++|.+++..| ..|.++
T Consensus        14 ~~v~c~---~~~l~-~ip~~~---------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l   79 (477)
T 2id5_A           14 RAVLCH---RKRFV-AVPEGI---------PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNL   79 (477)
T ss_dssp             TEEECC---SCCCS-SCCSCC---------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTC
T ss_pred             CEEEeC---CCCcC-cCCCCC---------CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCC
Confidence            466666   66664 455 44         4689999999999999889999999999999999999997666 789999


Q ss_pred             CCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCchhhhhhCCCccc
Q 047519          388 KNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALY  465 (892)
Q Consensus       388 ~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~  465 (892)
                      ++|++|+|++|  .+....+..+ .+++|++|++++|.++.+ |..+..+++|++|++++|.+.                
T Consensus        80 ~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~----------------  141 (477)
T 2id5_A           80 FNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV----------------  141 (477)
T ss_dssp             TTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC----------------
T ss_pred             ccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc----------------
Confidence            99999999998  4333322222 455555555555555522 334444555555555555544                


Q ss_pred             EEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCc
Q 047519          466 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLE  545 (892)
Q Consensus       466 ~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  545 (892)
                                +..+..+..+.        +|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       142 ----------~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~  203 (477)
T 2id5_A          142 ----------YISHRAFSGLN--------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK  203 (477)
T ss_dssp             ----------EECTTSSTTCT--------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred             ----------eeChhhccCCC--------CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence                      44443333333        555555555555555555566666777777777777666666666777777


Q ss_pred             EEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCC
Q 047519          546 VLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN  625 (892)
Q Consensus       546 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~  625 (892)
                      +|++++|.+.+.+|.......+|+.|++++|++++..+..+  ..+++|+.|+|++|++++..+.. +..          
T Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~-~~~----------  270 (477)
T 2id5_A          204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV--RHLVYLRFLNLSYNPISTIEGSM-LHE----------  270 (477)
T ss_dssp             EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH--TTCTTCCEEECCSSCCCEECTTS-CTT----------
T ss_pred             eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh--cCccccCeeECCCCcCCccChhh-ccc----------
Confidence            77777776666666555555577777777777654332233  56677777777777776443322 111          


Q ss_pred             CccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhc
Q 047519          626 SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL  705 (892)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l  705 (892)
                                                       ++.|+.|+|++|++++..|..|.++++|+.|+ |++|+|++..+..|
T Consensus       271 ---------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~  316 (477)
T 2id5_A          271 ---------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN-VSGNQLTTLEESVF  316 (477)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEE-CCSSCCSCCCGGGB
T ss_pred             ---------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEE-CCCCcCceeCHhHc
Confidence                                             55677788888888777777888888888887 88888887777778


Q ss_pred             cCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519          706 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       706 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      ..+++|+.|+|++|.+.+..+... -...+..+++.++...+.-|.
T Consensus       317 ~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          317 HSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             SCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESG
T ss_pred             CCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCch
Confidence            888888888888888876543211 012233344555655555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.7e-34  Score=307.79  Aligned_cols=234  Identities=30%  Similarity=0.505  Sum_probs=204.4

Q ss_pred             cccEEECCC-CccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          495 THKVLDMRM-NNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       495 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      .|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus        77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  156 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence            455555553 5566667777888888899999999888888888888899999999999998888888888999999999


Q ss_pred             cCCcCCCCCCCCCCCcCCC-CccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519          574 RSNRFWGPIGDNTTIVPFP-RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID  652 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (892)
                      ++|++++.+|..+  ..++ .|++|++++|++++.+|..+ ..                                     
T Consensus       157 ~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~-------------------------------------  196 (313)
T 1ogq_A          157 DGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN-------------------------------------  196 (313)
T ss_dssp             CSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG-------------------------------------
T ss_pred             cCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC-------------------------------------
Confidence            9999988888776  7777 89999999999998888653 11                                     


Q ss_pred             hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC
Q 047519          653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL  732 (892)
Q Consensus       653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  732 (892)
                            ++ |+.|++++|++++.+|..+..+++|+.|+ +++|++++.+|. +..+++|++|+|++|++++.+|..|..+
T Consensus       197 ------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  267 (313)
T 1ogq_A          197 ------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH-LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             ------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEE-CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEE-CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcC
Confidence                  33 88999999999999999999999999999 999999987776 8999999999999999999999999999


Q ss_pred             CCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCCCCCCC
Q 047519          733 KYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESC  778 (892)
Q Consensus       733 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c  778 (892)
                      ++|++|++++|+++|.+|....+..+....+.||+++||.|+. .|
T Consensus       268 ~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            9999999999999999999888888999999999999998875 56

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.4e-32  Score=302.49  Aligned_cols=349  Identities=12%  Similarity=0.099  Sum_probs=199.4

Q ss_pred             cCCCCCCCCCCcc-ccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCC-cCcCCCCCC
Q 047519           41 KMMSWKEDADCCS-WDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISS-GFSQLRSLT  118 (892)
Q Consensus        41 ~l~~w~~~~~~c~-w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~  118 (892)
                      .+++|..+.+||. |.+..|.-..-+|     ...........  .-..++++++|++++|.+..  +|. .+..+++|+
T Consensus         2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~   72 (390)
T 3o6n_A            2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE   72 (390)
T ss_dssp             -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCS
T ss_pred             CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhcccccCc
Confidence            3678988888875 5555553221122     22111111111  23457899999999999887  565 478999999


Q ss_pred             eEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCccc
Q 047519          119 LLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFI  197 (892)
Q Consensus       119 ~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~  197 (892)
                      +|+|++|.+.+..|..++  .+++|++|+++++.+.+..|..+.    ++++|++|++++|.+....+.. ..+  ++|+
T Consensus        73 ~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l--~~L~  144 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT--PKLT  144 (390)
T ss_dssp             EEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC--TTCC
T ss_pred             EEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhc----CCCCCCEEECCCCccCcCCHHHhcCC--CCCc
Confidence            999999999877677888  788888888877765555555566    7777777777777766544444 566  6777


Q ss_pred             EEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhh
Q 047519          198 YLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDY  277 (892)
Q Consensus       198 ~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~  277 (892)
                      +|++++|  .+++..|                ..+..+++|++|++++|.+.+.                         .
T Consensus       145 ~L~L~~n--~l~~~~~----------------~~~~~l~~L~~L~l~~n~l~~~-------------------------~  181 (390)
T 3o6n_A          145 TLSMSNN--NLERIED----------------DTFQATTSLQNLQLSSNRLTHV-------------------------D  181 (390)
T ss_dssp             EEECCSS--CCCBCCT----------------TTTSSCTTCCEEECCSSCCSBC-------------------------C
T ss_pred             EEECCCC--ccCccCh----------------hhccCCCCCCEEECCCCcCCcc-------------------------c
Confidence            7777776  6655555                5566666666666666644321                         2


Q ss_pred             hcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCc
Q 047519          278 IGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPS  357 (892)
Q Consensus       278 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~  357 (892)
                      +..+++|++|++++|.+.+     +...++|+.|+++   +|.+.....         ...++|++|++++|.+++.  .
T Consensus       182 ~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~---~n~l~~~~~---------~~~~~L~~L~l~~n~l~~~--~  242 (390)
T 3o6n_A          182 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDAS---HNSINVVRG---------PVNVELTILKLQHNNLTDT--A  242 (390)
T ss_dssp             GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECC---SSCCCEEEC---------CCCSSCCEEECCSSCCCCC--G
T ss_pred             cccccccceeecccccccc-----cCCCCcceEEECC---CCeeeeccc---------cccccccEEECCCCCCccc--H
Confidence            3445566666666665543     2233456666666   555543311         2234556666666655532  3


Q ss_pred             cccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCC
Q 047519          358 SVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQ  437 (892)
Q Consensus       358 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~  437 (892)
                      .+..+++|++|++++|.+++..+ ..+..+++|++|++++|                         +++.+|..+..+++
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-------------------------~l~~~~~~~~~l~~  296 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNN-------------------------RLVALNLYGQPIPT  296 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSS-------------------------CCCEEECSSSCCTT
T ss_pred             HHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCC-------------------------cCcccCcccCCCCC
Confidence            45555566666666665554444 45555555555555555                         44444444445555


Q ss_pred             ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCc
Q 047519          438 LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG  508 (892)
Q Consensus       438 L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~  508 (892)
                      |++|++++|++. .+|..+..+  ++|+.|++++|+++...   +..+        ++|+.|++++|.+..
T Consensus       297 L~~L~L~~n~l~-~~~~~~~~l--~~L~~L~L~~N~i~~~~---~~~~--------~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          297 LKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLK---LSTH--------HTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCC---CCTT--------CCCSEEECCSSCEEH
T ss_pred             CCEEECCCCcce-ecCcccccc--CcCCEEECCCCccceeC---chhh--------ccCCEEEcCCCCccc
Confidence            555555555555 334444444  55555555555555442   1112        255566666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.1e-32  Score=303.31  Aligned_cols=333  Identities=21%  Similarity=0.233  Sum_probs=214.3

Q ss_pred             CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCc
Q 047519          337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNL  415 (892)
Q Consensus       337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L  415 (892)
                      .+++++.|++++|.++...+..+..+++|++|++++|.+++..+ ..|..+++|++|++++|  .+.+..+..+ .+++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCC--CCCcCCHHHhcCCCCC
Confidence            45677777777777775444456777777777777777764433 56777777777777777  4444444333 55566


Q ss_pred             cEEEccCCCCCCcchh-hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519          416 FGLGLSACNISEFPDI-LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL  494 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~  494 (892)
                      ++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+  ++|++|++++|.+++..                
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~----------------  181 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVD----------------  181 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC--TTCCEEECCSSCCSBCC----------------
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC--CCCCEEECCCCcCCccc----------------
Confidence            6666666666555543 3555556666665555554444444444  55555555555444321                


Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                                         +..+++|+.|++++|.+++     +...++|++|++++|++... |..  ..++|+.|+++
T Consensus       182 -------------------~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~  234 (390)
T 3o6n_A          182 -------------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQ  234 (390)
T ss_dssp             -------------------GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECC
T ss_pred             -------------------cccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECC
Confidence                               3334556666666665552     22334566666666666552 322  24567777777


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|.+++.  ..  +..+++|++|++++|.+++..|..+ .                                        
T Consensus       235 ~n~l~~~--~~--l~~l~~L~~L~Ls~n~l~~~~~~~~-~----------------------------------------  269 (390)
T 3o6n_A          235 HNNLTDT--AW--LLNYPGLVEVDLSYNELEKIMYHPF-V----------------------------------------  269 (390)
T ss_dssp             SSCCCCC--GG--GGGCTTCSEEECCSSCCCEEESGGG-T----------------------------------------
T ss_pred             CCCCccc--HH--HcCCCCccEEECCCCcCCCcChhHc-c----------------------------------------
Confidence            7776543  22  2667777777777777776555432 1                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                         .+++|+.|++++|+++ .+|..+..+++|+.|+ +++|+++ .+|..+..+++|+.|+|++|+++.. |  +..+++
T Consensus       270 ---~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~-L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~  340 (390)
T 3o6n_A          270 ---KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLD-LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT  340 (390)
T ss_dssp             ---TCSSCCEEECCSSCCC-EEECSSSCCTTCCEEE-CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred             ---ccccCCEEECCCCcCc-ccCcccCCCCCCCEEE-CCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhcc
Confidence               1566778888888877 4566677788899998 9999998 6677788899999999999999854 3  778889


Q ss_pred             CCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCC
Q 047519          735 LSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGF  772 (892)
Q Consensus       735 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~  772 (892)
                      |+.|++++|++++.... ..+..+....+.+++..|..
T Consensus       341 L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          341 LKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             CCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            99999999999875332 23445555667777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.4e-31  Score=314.43  Aligned_cols=348  Identities=13%  Similarity=0.124  Sum_probs=214.8

Q ss_pred             cCCCCCCCCCCcc----ccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCC
Q 047519           41 KMMSWKEDADCCS----WDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRS  116 (892)
Q Consensus        41 ~l~~w~~~~~~c~----w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~  116 (892)
                      .+++|..+.+||.    |.++.|+.   ++   +-........+    .-..+.+++.|++++|.+... .+..|+.+++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~   76 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQ   76 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC---EE---CSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHHHCCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCc---ee---cccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHccCCC
Confidence            6889988778874    66665542   22   11111111111    224578999999999999873 3345789999


Q ss_pred             CCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCc
Q 047519          117 LTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEES  195 (892)
Q Consensus       117 L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~  195 (892)
                      |++|+|++|.+.+..|..|+  .+++|++|+|+++.+.+..|..++    ++++|++|+|++|.+.+..+.. ..+  ++
T Consensus        77 L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l--~~  148 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT--PK  148 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC--TT
T ss_pred             CcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHc----CCCCCCEEEeeCCCCCCCCHHHhccC--CC
Confidence            99999999999987777888  888888888887775555555566    7777777777777776555554 666  77


Q ss_pred             ccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecCh
Q 047519          196 FIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDS  275 (892)
Q Consensus       196 L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~  275 (892)
                      |++|+|++|  .+++..|                ..++.+++|++|++++|.+.+.                        
T Consensus       149 L~~L~Ls~N--~l~~~~~----------------~~~~~l~~L~~L~L~~N~l~~~------------------------  186 (597)
T 3oja_B          149 LTTLSMSNN--NLERIED----------------DTFQATTSLQNLQLSSNRLTHV------------------------  186 (597)
T ss_dssp             CCEEECCSS--CCCBCCT----------------TTTTTCTTCCEEECTTSCCSBC------------------------
T ss_pred             CCEEEeeCC--cCCCCCh----------------hhhhcCCcCcEEECcCCCCCCc------------------------
Confidence            777777777  6666655                5566666777777776654421                        


Q ss_pred             hhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCC
Q 047519          276 DYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSI  355 (892)
Q Consensus       276 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~  355 (892)
                       .+..+++|++|++++|.+.+     +...++|+.|+++   +|.+....+.+         .++|+.|++++|.+++  
T Consensus       187 -~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls---~n~l~~~~~~~---------~~~L~~L~L~~n~l~~--  246 (597)
T 3oja_B          187 -DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDAS---HNSINVVRGPV---------NVELTILKLQHNNLTD--  246 (597)
T ss_dssp             -CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECC---SSCCCEEECSC---------CSCCCEEECCSSCCCC--
T ss_pred             -ChhhhhhhhhhhcccCcccc-----ccCCchhheeecc---CCccccccccc---------CCCCCEEECCCCCCCC--
Confidence             23445666667776666553     2333456666666   66654332222         2456666666666654  


Q ss_pred             CccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCC
Q 047519          356 PSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTL  435 (892)
Q Consensus       356 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l  435 (892)
                      +..+..+++|++|+|++|.+++..| ..|..+++|++|+|++|                         .++.+|..+..+
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-------------------------~l~~l~~~~~~l  300 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNN-------------------------RLVALNLYGQPI  300 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTS-------------------------CCCEEECSSSCC
T ss_pred             ChhhccCCCCCEEECCCCccCCCCH-HHhcCccCCCEEECCCC-------------------------CCCCCCcccccC
Confidence            2455566666666666666655444 45555555555555555                         444444444555


Q ss_pred             CCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc
Q 047519          436 HQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK  509 (892)
Q Consensus       436 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~  509 (892)
                      ++|+.|+|++|.+. .+|..+..+  ++|+.|++++|.+++....   .+        ++|+.|++++|.+.+.
T Consensus       301 ~~L~~L~Ls~N~l~-~i~~~~~~l--~~L~~L~L~~N~l~~~~~~---~~--------~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          301 PTLKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLS---TH--------HTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTCCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCCCC---TT--------CCCSEEECCSSCEEHH
T ss_pred             CCCcEEECCCCCCC-ccCcccccC--CCCCEEECCCCCCCCcChh---hc--------CCCCEEEeeCCCCCCh
Confidence            66666666666665 345555555  6666666666666554322   12        2566777777776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=9.7e-32  Score=317.73  Aligned_cols=334  Identities=21%  Similarity=0.229  Sum_probs=223.5

Q ss_pred             CCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCc
Q 047519          337 GRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNL  415 (892)
Q Consensus       337 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L  415 (892)
                      .+.+++.+++++|.+....+..+..+++|++|++++|.+++..+ ..|..+++|++|+|++|  .+.+..+..+ .+++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSS--CCCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCC--cCCCCCHHHHcCCCCC
Confidence            35677778888877776555566777788888888887775544 56777777777777777  4444444433 55566


Q ss_pred             cEEEccCCCCCCcchh-hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519          416 FGLGLSACNISEFPDI-LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL  494 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~  494 (892)
                      ++|++++|.++.+|.. |+.+++|++|++++|.+.+..|..+..+  ++|++|++++|.+++..                
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~----------------  187 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT--TSLQNLQLSSNRLTHVD----------------  187 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECTTSCCSBCC----------------
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC--CcCcEEECcCCCCCCcC----------------
Confidence            6666666655555443 3555555555555555555555445444  55555555555444332                


Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                                         +..+++|+.|++++|.+++     +...++|+.|++++|.+... |..+  .++|+.|+++
T Consensus       188 -------------------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~  240 (597)
T 3oja_B          188 -------------------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQ  240 (597)
T ss_dssp             -------------------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECC
T ss_pred             -------------------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECC
Confidence                               2334556666666665552     23344666677777666552 2222  2567777777


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|.+++.  ..+  ..+++|+.|+|++|.+++..|..+ +.                                       
T Consensus       241 ~n~l~~~--~~l--~~l~~L~~L~Ls~N~l~~~~~~~~-~~---------------------------------------  276 (597)
T 3oja_B          241 HNNLTDT--AWL--LNYPGLVEVDLSYNELEKIMYHPF-VK---------------------------------------  276 (597)
T ss_dssp             SSCCCCC--GGG--GGCTTCSEEECCSSCCCEEESGGG-TT---------------------------------------
T ss_pred             CCCCCCC--hhh--ccCCCCCEEECCCCccCCCCHHHh-cC---------------------------------------
Confidence            7777653  222  667778888888888776666442 11                                       


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                          +++|+.|+|++|++++ +|..+..+++|+.|+ |++|+++ .+|..+..+++|+.|+|++|.+++. |  +..+++
T Consensus       277 ----l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~-Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~  346 (597)
T 3oja_B          277 ----MQRLERLYISNNRLVA-LNLYGQPIPTLKVLD-LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT  346 (597)
T ss_dssp             ----CSSCCEEECTTSCCCE-EECSSSCCTTCCEEE-CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred             ----ccCCCEEECCCCCCCC-CCcccccCCCCcEEE-CCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCC
Confidence                5667788888888874 577777888999998 9999999 6788889999999999999999854 3  677889


Q ss_pred             CCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 047519          735 LSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       735 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  773 (892)
                      |+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus       347 L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          347 LKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            99999999999987543 245566677788999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=5.7e-31  Score=289.96  Aligned_cols=306  Identities=21%  Similarity=0.293  Sum_probs=194.3

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL  415 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  415 (892)
                      ..+++|++|++++|.+.. +| .+..+++|++|++++|.+++ ++ . +..+++|++|++++|.+  .. ++....+++|
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~-~-~~~l~~L~~L~L~~n~i--~~-~~~~~~l~~L  112 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-IS-P-LSNLVKLTNLYIGTNKI--TD-ISALQNLTNL  112 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCC--CC-CGGGTTCTTC
T ss_pred             hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-ch-h-hhcCCcCCEEEccCCcc--cC-chHHcCCCcC
Confidence            345666777777766653 33 36666667777777666653 33 1 56666666666666632  22 2222245555


Q ss_pred             cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519          416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT  495 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~  495 (892)
                      ++|++++|.++.++. +..+++|++|++++|.....++. +..+  +                                +
T Consensus       113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l--~--------------------------------~  156 (347)
T 4fmz_A          113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNM--T--------------------------------G  156 (347)
T ss_dssp             SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTC--T--------------------------------T
T ss_pred             CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhC--C--------------------------------C
Confidence            555555555554444 44555555555555543322222 3333  4                                4


Q ss_pred             ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519          496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS  575 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  575 (892)
                      |++|++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+++|+.|++++|++.+..+  +..+++|++|++++
T Consensus       157 L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN  230 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             CcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence            5555555555544333  55667777777777777643 32 6677777777777777776443  66777777777777


Q ss_pred             CcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhH
Q 047519          576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQI  655 (892)
Q Consensus       576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (892)
                      |++++..+  +  ..+++|++|++++|.+++. + . +.                                         
T Consensus       231 n~l~~~~~--~--~~l~~L~~L~l~~n~l~~~-~-~-~~-----------------------------------------  262 (347)
T 4fmz_A          231 NKITDLSP--L--ANLSQLTWLEIGTNQISDI-N-A-VK-----------------------------------------  262 (347)
T ss_dssp             SCCCCCGG--G--TTCTTCCEEECCSSCCCCC-G-G-GT-----------------------------------------
T ss_pred             CccCCCcc--h--hcCCCCCEEECCCCccCCC-h-h-Hh-----------------------------------------
Confidence            77765443  2  6677788888888877642 2 1 11                                         


Q ss_pred             HHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCC
Q 047519          656 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL  735 (892)
Q Consensus       656 ~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  735 (892)
                        .+++|+.|++++|++++.  ..+..+++|+.|+ +++|++++..|..|+++++|+.|+|++|++++..|  +..+++|
T Consensus       263 --~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~-L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L  335 (347)
T 4fmz_A          263 --DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF-LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM  335 (347)
T ss_dssp             --TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE-CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred             --cCCCcCEEEccCCccCCC--hhhcCCCCCCEEE-CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence              156778888888888753  3577888888887 88888888888888888888888888888886655  7788888


Q ss_pred             CEEECCCCcCc
Q 047519          736 SVLNLSYNQFE  746 (892)
Q Consensus       736 ~~L~ls~N~l~  746 (892)
                      ++|++++|+++
T Consensus       336 ~~L~l~~N~i~  346 (347)
T 4fmz_A          336 DSADFANQVIK  346 (347)
T ss_dssp             SEESSSCC---
T ss_pred             ceeehhhhccc
Confidence            88888888875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.5e-30  Score=286.58  Aligned_cols=307  Identities=21%  Similarity=0.336  Sum_probs=233.4

Q ss_pred             ccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccCh
Q 047519          302 KSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL  381 (892)
Q Consensus       302 l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~  381 (892)
                      +..+++|++|+++   +|.+. .+|.+       ..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ 
T Consensus        40 ~~~l~~L~~L~l~---~~~i~-~~~~~-------~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-  104 (347)
T 4fmz_A           40 QEELESITKLVVA---GEKVA-SIQGI-------EYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-  104 (347)
T ss_dssp             HHHHTTCSEEECC---SSCCC-CCTTG-------GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-
T ss_pred             chhcccccEEEEe---CCccc-cchhh-------hhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-
Confidence            5678999999999   88875 45667       8899999999999999854 44 9999999999999999985 44 


Q ss_pred             hhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCC
Q 047519          382 YDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI  461 (892)
Q Consensus       382 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  461 (892)
                       .+..+++|++|++++|.+  .+. +....+++|++|++++|.....+..+..+++|++|++++|.+.+..+  +..+  
T Consensus       105 -~~~~l~~L~~L~l~~n~i--~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l--  176 (347)
T 4fmz_A          105 -ALQNLTNLRELYLNEDNI--SDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL--  176 (347)
T ss_dssp             -GGTTCTTCSEEECTTSCC--CCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGC--
T ss_pred             -HHcCCCcCCEEECcCCcc--cCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccC--
Confidence             589999999999999944  333 33448999999999999666444458999999999999999986544  5555  


Q ss_pred             CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC
Q 047519          462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC  541 (892)
Q Consensus       462 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  541 (892)
                      ++|+.|++++|.+.+..+                                  +..+++|+.|++++|.+++..+  +..+
T Consensus       177 ~~L~~L~l~~n~l~~~~~----------------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~~  220 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP----------------------------------LASLTSLHYFTAYVNQITDITP--VANM  220 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG----------------------------------GGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred             CCCCEEEccCCccccccc----------------------------------ccCCCccceeecccCCCCCCch--hhcC
Confidence            777777777776654321                                  4455566666666666664333  5666


Q ss_pred             CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519          542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH  621 (892)
Q Consensus       542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  621 (892)
                      ++|++|++++|++++..+  +..+++|++|++++|.+++. + .  +..+++|++|++++|++++. | . +.       
T Consensus       221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~--~~~l~~L~~L~l~~n~l~~~-~-~-~~-------  284 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-A--VKDLTKLKMLNVGSNQISDI-S-V-LN-------  284 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-G--GTTCTTCCEEECCSSCCCCC-G-G-GG-------
T ss_pred             CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-h--HhcCCCcCEEEccCCccCCC-h-h-hc-------
Confidence            777777777777766433  66777777777777777553 2 2  26677888888888887743 2 1 11       


Q ss_pred             ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc
Q 047519          622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI  701 (892)
Q Consensus       622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i  701 (892)
                                                          .+++|+.|++++|++++..|..++.+++|+.|+ +++|++++..
T Consensus       285 ------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~-L~~n~l~~~~  327 (347)
T 4fmz_A          285 ------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF-LSQNHITDIR  327 (347)
T ss_dssp             ------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE-CCSSSCCCCG
T ss_pred             ------------------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEE-ccCCcccccc
Confidence                                                156788899999999888888899999999998 9999999776


Q ss_pred             chhccCCCCCCeeeCCCCcCC
Q 047519          702 PSLLRNLTEVESLDLSSNMLV  722 (892)
Q Consensus       702 p~~l~~l~~L~~L~Ls~N~l~  722 (892)
                      |  +..+++|+.||+++|.++
T Consensus       328 ~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          328 P--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             G--GGGCTTCSEESSSCC---
T ss_pred             C--hhhhhccceeehhhhccc
Confidence            6  888999999999999886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.3e-31  Score=291.52  Aligned_cols=276  Identities=13%  Similarity=0.133  Sum_probs=158.3

Q ss_pred             CCCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCC----CCCCCccccceEecC--------CCCeEEEEEC
Q 047519            4 KLCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWK----EDADCCSWDGVTCDT--------VAGHVIGLDL   71 (892)
Q Consensus         4 ~~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~----~~~~~c~w~gv~C~~--------~~~~v~~L~L   71 (892)
                      ..+..+|++||++||+++..+  +.           +.+.+|.    ...++|.|.|+.|+.        ..++|+.|+|
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~--~~-----------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L   88 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNAD--RN-----------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL   88 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHC--CT-----------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEE
T ss_pred             cccCchHHHHHHHHHHhccCC--ch-----------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEc
Confidence            356778999999999998544  21           2567893    467899999999952        2356778888


Q ss_pred             CCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcc
Q 047519           72 SCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIF  151 (892)
Q Consensus        72 ~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~  151 (892)
                      +++.++ .+++  .+.++++|++|+|++|.+..  +|..++++++|++|+|++|.+. .+|..++  ++++|++|++++|
T Consensus        89 ~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~--~l~~L~~L~L~~n  160 (328)
T 4fcg_A           89 RSVPLP-QFPD--QAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIA--SLNRLRELSIRAC  160 (328)
T ss_dssp             ESSCCS-SCCS--CGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGG--GCTTCCEEEEEEE
T ss_pred             cCCCch-hcCh--hhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHh--cCcCCCEEECCCC
Confidence            877777 5666  67777788888888777773  7777777778888888777776 6676666  5555555555443


Q ss_pred             cCCcchhhhhhcccCCCCCCCEEecCCccCccccccc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhccccccccc
Q 047519          152 AFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMK  230 (892)
Q Consensus       152 ~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~  230 (892)
                      ...+.+|..+.    .      ..         .... ..+  ++|++|++++|  .++ .+|                .
T Consensus       161 ~~~~~~p~~~~----~------~~---------~~~~~~~l--~~L~~L~L~~n--~l~-~lp----------------~  200 (328)
T 4fcg_A          161 PELTELPEPLA----S------TD---------ASGEHQGL--VNLQSLRLEWT--GIR-SLP----------------A  200 (328)
T ss_dssp             TTCCCCCSCSE----E------EC----------CCCEEES--TTCCEEEEEEE--CCC-CCC----------------G
T ss_pred             CCccccChhHh----h------cc---------chhhhccC--CCCCEEECcCC--CcC-cch----------------H
Confidence            33444443332    1      00         0000 123  45555555555  444 334                3


Q ss_pred             ccccCCCCCEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcE
Q 047519          231 DLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVV  310 (892)
Q Consensus       231 ~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  310 (892)
                      .++++++|++|++++|.+.+                      +|. .+..+++|++|++++|.+.+.+|..++.+++|++
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~----------------------l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSA----------------------LGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCC----------------------CCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             hhcCCCCCCEEEccCCCCCc----------------------Cch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            44444555555555543321                      222 3444555555555555555555555555555555


Q ss_pred             EecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCC
Q 047519          311 LSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSN  373 (892)
Q Consensus       311 L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  373 (892)
                      |+++   +|.+.+.+| .+       .++++|++|++++|.+.+.+|..++++++|+.+++..+
T Consensus       258 L~L~---~n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          258 LILK---DCSNLLTLPLDI-------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EECT---TCTTCCBCCTTG-------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EECC---CCCchhhcchhh-------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            5555   444444444 44       44444444444444444444444444444444444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.9e-28  Score=267.64  Aligned_cols=125  Identities=26%  Similarity=0.313  Sum_probs=62.0

Q ss_pred             CcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEE
Q 047519          340 HYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGL  418 (892)
Q Consensus       340 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L  418 (892)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..+ ..|.++++|++|++++|  .+.+..+..+ .+++|++|
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINN--KISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSS--CCCCBCTTTTTTCTTCCEE
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCC--cCCeeCHHHhcCCCCCCEE
Confidence            4555555555554 3443332  455555666555553333 44555555555555555  3333333333 44455555


Q ss_pred             EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCC
Q 047519          419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFL  474 (892)
Q Consensus       419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  474 (892)
                      ++++|.++.+|..+.  ++|++|++++|.+.+..+..+..+  ++|+.|++++|.+
T Consensus       106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l  157 (330)
T 1xku_A          106 YLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPL  157 (330)
T ss_dssp             ECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTC--TTCCEEECCSSCC
T ss_pred             ECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCC--ccccEEECCCCcC
Confidence            555555554444332  456666666665554444444444  5555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.3e-28  Score=269.00  Aligned_cols=126  Identities=24%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             CcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEE
Q 047519          340 HYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGL  418 (892)
Q Consensus       340 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L  418 (892)
                      +++.++++++.++ .+|..+.  ++|++|++++|.+++..+ ..|.++++|++|++++|  .+.+..+..+ .+++|++|
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNN--KISKIHEKAFSPLRKLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS--CCCEECGGGSTTCTTCCEE
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCH-hHhhCCCCCcEEECCCC--ccCccCHhHhhCcCCCCEE
Confidence            4555555555554 4444432  456666666666553333 45555555666666555  3333323322 44444444


Q ss_pred             EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC
Q 047519          419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT  475 (892)
Q Consensus       419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  475 (892)
                      ++++|.++.+|..+.  ++|++|++++|.+.+..+..+..+  ++|+.|++++|.++
T Consensus       108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL--RNMNCIEMGGNPLE  160 (332)
T ss_dssp             ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSC--SSCCEEECCSCCCB
T ss_pred             ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCC--ccCCEEECCCCccc
Confidence            444444444444332  455555555555554444444444  55555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.6e-28  Score=266.71  Aligned_cols=267  Identities=21%  Similarity=0.240  Sum_probs=181.8

Q ss_pred             CCccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecC
Q 047519          413 PNLFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD  491 (892)
Q Consensus       413 ~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~  491 (892)
                      ++|+.|++++|.++.+ |..+..+++|++|++++|.+++..|..+..+  ++|++|++++|.++..++..+         
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~---------  122 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKLYISKNHLVEIPPNLP---------  122 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--TTCCEEECCSSCCCSCCSSCC---------
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--CCCCEEECCCCcCCccCcccc---------
Confidence            3455555555555544 3356666777777777777766656666665  677777777776664433222         


Q ss_pred             CCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCC--CCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCC
Q 047519          492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLE--GPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ  569 (892)
Q Consensus       492 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  569 (892)
                        ++|++|++++|.+.+..+..|..+++|++|++++|.++  +..|..+..+ +|++|++++|++++ +|..+.  ++|+
T Consensus       123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~  196 (332)
T 2ft3_A          123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLN  196 (332)
T ss_dssp             --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCS
T ss_pred             --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCC
Confidence              16677777777777666666777777888888887775  3556666666 77888888887776 454443  6777


Q ss_pred             EEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEc
Q 047519          570 VLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIK  649 (892)
Q Consensus       570 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  649 (892)
                      +|++++|.+++..+..+  ..+++|++|++++|++++..|..+ .                                   
T Consensus       197 ~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~-~-----------------------------------  238 (332)
T 2ft3_A          197 ELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSL-S-----------------------------------  238 (332)
T ss_dssp             CCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGG-G-----------------------------------
T ss_pred             EEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHh-h-----------------------------------
Confidence            88888888777666655  677778888888888776544332 1                                   


Q ss_pred             cchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCC------CCCCeeeCCCCcCC-
Q 047519          650 GIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNL------TEVESLDLSSNMLV-  722 (892)
Q Consensus       650 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l------~~L~~L~Ls~N~l~-  722 (892)
                              .+++|+.|++++|+++ .+|..+..+++|+.|+ +++|++++..+..|...      ++|+.|++++|.+. 
T Consensus       239 --------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~-l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          239 --------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY-LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             --------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE-CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             --------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEE-CCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence                    1566778888888887 7777788888888887 88888886666666543      56788888888887 


Q ss_pred             -CCCccccCCCCCCCEEECCCCc
Q 047519          723 -GHIPTQLTSLKYLSVLNLSYNQ  744 (892)
Q Consensus       723 -~~ip~~l~~l~~L~~L~ls~N~  744 (892)
                       +..|..|..++.|+.+++++|+
T Consensus       309 ~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          309 WEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGSCGGGGTTBCCSTTEEC----
T ss_pred             cccCcccccccchhhhhhccccc
Confidence             5677778888888888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.3e-32  Score=312.25  Aligned_cols=288  Identities=19%  Similarity=0.174  Sum_probs=160.7

Q ss_pred             CccEEEccCCCCC-----CcchhhhCCCCccEEEccCCCCCCCCchhhhhh---CCCcccEEEccCCCCCCCCCCCCCCC
Q 047519          414 NLFGLGLSACNIS-----EFPDILRTLHQLQWFNLSKNRIHGRISSWMWDL---GITALYYLDLSNNFLTNIEYFPPTNM  485 (892)
Q Consensus       414 ~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~~~L~~L~Ls~n~l~~~~~~~~~~l  485 (892)
                      +|++|++++|.++     .+|..+..+++|++|++++|.+.+..+..+...   ..++|++|++++|.+++.....+.. 
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-
Confidence            4555555555555     235556666666666666666554333322210   0135666666666655432110000 


Q ss_pred             CeeecCCCCcccEEECCCCccCcccccccc-----CCCCCCEEEccCCCCCCC----CCccccCCCCCcEEEccCCCCCC
Q 047519          486 TQLNFDSNLTHKVLDMRMNNFNGKISQKFV-----NSCNLTNLNLNGNRLEGP----LPLSLVNCHHLEVLDVGNNQIND  556 (892)
Q Consensus       486 ~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~  556 (892)
                         .+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|++++
T Consensus       165 ---~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          165 ---VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             ---HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             ---HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence               011122566666666666544333332     245677777777777643    35556666777777777777655


Q ss_pred             Cc-----chhccCCCCCCEEEccCCcCCCC----CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCc
Q 047519          557 NF-----PNWLEILPELQVLILRSNRFWGP----IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV  627 (892)
Q Consensus       557 ~~-----p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~  627 (892)
                      ..     +..+..+++|++|++++|.+++.    ++..+  ..+++|++|++++|.+++..+..+...+           
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------  308 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL--RAKESLKELSLAGNELGDEGARLLCETL-----------  308 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH--HHCTTCCEEECTTCCCHHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH--hhCCCcceEECCCCCCchHHHHHHHHHh-----------
Confidence            32     22233466777777777766542    23322  4466777777777766533221111000           


Q ss_pred             cccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC----ChhhhcCccccccccccCCCCCCCCcch
Q 047519          628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNNISHNNLTGDIPS  703 (892)
Q Consensus       628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~~Ls~N~l~~~ip~  703 (892)
                                                  ....+.|+.|++++|.+++.    +|..+..+++|+.|+ +++|++++..+.
T Consensus       309 ----------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~-Ls~n~i~~~~~~  359 (461)
T 1z7x_W          309 ----------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ-ISNNRLEDAGVR  359 (461)
T ss_dssp             ----------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE-CCSSBCHHHHHH
T ss_pred             ----------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE-ccCCccccccHH
Confidence                                        00024677777777777654    455566667777776 777777655444


Q ss_pred             hccC-----CCCCCeeeCCCCcCCC----CCccccCCCCCCCEEECCCCcCcc
Q 047519          704 LLRN-----LTEVESLDLSSNMLVG----HIPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       704 ~l~~-----l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                      .+..     .++|+.|+|++|++++    .+|..+..+++|++|++++|++++
T Consensus       360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            4432     5677777777777765    566667777777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.1e-27  Score=261.69  Aligned_cols=269  Identities=18%  Similarity=0.108  Sum_probs=161.1

Q ss_pred             CCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcCCCcccc
Q 047519          282 DKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVY  360 (892)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~  360 (892)
                      ++|++|++++|.+++..+..++++++|++|+++   +|.+.+..| .+       .++++|++|++++|.++ .+|..+.
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~---~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~-~l~~~~~  120 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI---NNKISKISPGAF-------APLVKLERLYLSKNQLK-ELPEKMP  120 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC---SSCCCCBCTTTT-------TTCTTCCEEECCSSCCS-BCCSSCC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECC---CCcCCeeCHHHh-------cCCCCCCEEECCCCcCC-ccChhhc
Confidence            467777777777776666677777777777777   777776666 67       77777777777777776 4554443


Q ss_pred             CCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhCCCCcc
Q 047519          361 ELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRTLHQLQ  439 (892)
Q Consensus       361 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~  439 (892)
                        ++|++|++++|.+++..+ ..+.++++|++|++++|.+...+..+..+ .+++|++|++++|.++.+|..+.  ++|+
T Consensus       121 --~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~  195 (330)
T 1xku_A          121 --KTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLT  195 (330)
T ss_dssp             --TTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCS
T ss_pred             --ccccEEECCCCcccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCC
Confidence              677777777777774433 66777777777777777443223333333 45556666666665555554332  4555


Q ss_pred             EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519          440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN  519 (892)
Q Consensus       440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  519 (892)
                      +|++++|.+++..+..+..+  ++|                                +.|++++|.+++..+..+..+++
T Consensus       196 ~L~l~~n~l~~~~~~~~~~l--~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~  241 (330)
T 1xku_A          196 ELHLDGNKITKVDAASLKGL--NNL--------------------------------AKLGLSFNSISAVDNGSLANTPH  241 (330)
T ss_dssp             EEECTTSCCCEECTGGGTTC--TTC--------------------------------CEEECCSSCCCEECTTTGGGSTT
T ss_pred             EEECCCCcCCccCHHHhcCC--CCC--------------------------------CEEECCCCcCceeChhhccCCCC
Confidence            55555555554444444444  444                                44555555554444445555666


Q ss_pred             CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccC------CCCCCEEEccCCcCCC--CCCCCCCCcCC
Q 047519          520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEI------LPELQVLILRSNRFWG--PIGDNTTIVPF  591 (892)
Q Consensus       520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~~--~~~~~~~~~~l  591 (892)
                      |++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.++.|++++|++..  ..|..+  ..+
T Consensus       242 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f--~~~  318 (330)
T 1xku_A          242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF--RCV  318 (330)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG--TTC
T ss_pred             CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc--ccc
Confidence            666666666666 55556666666666666666666654444432      2566666777766642  222222  556


Q ss_pred             CCccEEEcCCCC
Q 047519          592 PRFRIIDLSHNE  603 (892)
Q Consensus       592 ~~L~~L~Ls~N~  603 (892)
                      +.++.+++++|+
T Consensus       319 ~~l~~l~L~~N~  330 (330)
T 1xku_A          319 YVRAAVQLGNYK  330 (330)
T ss_dssp             CCGGGEEC----
T ss_pred             cceeEEEecccC
Confidence            666777776664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=5.6e-32  Score=310.34  Aligned_cols=385  Identities=19%  Similarity=0.141  Sum_probs=238.4

Q ss_pred             CCCcEEEccCCCCCcCCCc-cccCCCCCcEEecCccccccceee----cc-chhhhhhccCCCCCcCEEEccCCcCCcCC
Q 047519          282 DKRRSITGYVFNFAGGPIN-WKSTLQSTVVLSTTEAEYMAITKA----VK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSI  355 (892)
Q Consensus       282 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~~~~n~l~~~----~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~  355 (892)
                      ++|++|++++|.++..... .+..+++|++|+++   +|.+...    ++ .+       ..+++|++|++++|.+++..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~---~~~l~~~~~~~l~~~l-------~~~~~L~~L~Ls~n~l~~~~   72 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD---DCGLTEARCKDISSAL-------RVNPALAELNLRSNELGDVG   72 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE---SSCCCHHHHHHHHHHH-------HTCTTCCEEECTTCCCHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEcc---CCCCCHHHHHHHHHHH-------HhCCCcCEEeCCCCcCChHH
Confidence            4688899998888764333 36778888899888   8887643    33 56       67788888888888887544


Q ss_pred             Ccccc-CCC----CCCEEECcCCcCCC----ccChhhcCCCCCCCEEEcccCCCCCCccccCC-----C-CCCCccEEEc
Q 047519          356 PSSVY-ELE----NLILLRLPSNRLSG----TTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN-----S-SFPNLFGLGL  420 (892)
Q Consensus       356 p~~l~-~l~----~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~-~l~~L~~L~L  420 (892)
                      +..+. .++    +|++|++++|.++.    .++ ..+..+++|++|++++|.+  ....+..     . ..++|++|++
T Consensus        73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~~L~~L~L  149 (461)
T 1z7x_W           73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCRLEKLQL  149 (461)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBC--HHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcC--chHHHHHHHHHHhcCCCcceEEEC
Confidence            43332 344    68888888888873    334 6677888888888888843  2211110     1 2456777777


Q ss_pred             cCCCCCC-----cchhhhCCCCccEEEccCCCCCCCCchhhhh-h--CCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519          421 SACNISE-----FPDILRTLHQLQWFNLSKNRIHGRISSWMWD-L--GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS  492 (892)
Q Consensus       421 ~~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~  492 (892)
                      ++|.++.     ++..+..+++|++|++++|.+.+..+..+.. +  ..++|++|++++|.+++....            
T Consensus       150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------  217 (461)
T 1z7x_W          150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR------------  217 (461)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH------------
T ss_pred             CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH------------
Confidence            7777762     3455666777777777777765433333322 0  013555555555544432100            


Q ss_pred             CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCC-----CccccCCCCCcEEEccCCCCCCC----cchhcc
Q 047519          493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL-----PLSLVNCHHLEVLDVGNNQINDN----FPNWLE  563 (892)
Q Consensus       493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~  563 (892)
                                      .++..+..+++|++|++++|.+++..     +..+..+++|++|++++|++++.    ++..+.
T Consensus       218 ----------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  281 (461)
T 1z7x_W          218 ----------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  281 (461)
T ss_dssp             ----------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence                            13445555666677777766665321     12223466777777777776653    455555


Q ss_pred             CCCCCCEEEccCCcCCCCCCCCCC---CcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCc
Q 047519          564 ILPELQVLILRSNRFWGPIGDNTT---IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY  640 (892)
Q Consensus       564 ~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~  640 (892)
                      .+++|++|++++|.+.+..+..+.   ....++|++|++++|.+++.....+.                           
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------------  334 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS---------------------------  334 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH---------------------------
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH---------------------------
Confidence            667777777777766432211110   01235788888888887643211110                           


Q ss_pred             cceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcC-----ccccccccccCCCCCCC----CcchhccCCCCC
Q 047519          641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGK-----LNLLKGLNNISHNNLTG----DIPSLLRNLTEV  711 (892)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~~Ls~N~l~~----~ip~~l~~l~~L  711 (892)
                                   .....++.|+.||+++|.+++..+..+..     .++|+.|+ +++|++++    .+|..+..+++|
T Consensus       335 -------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~-L~~n~i~~~~~~~l~~~l~~~~~L  400 (461)
T 1z7x_W          335 -------------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW-LADCDVSDSSCSSLAATLLANHSL  400 (461)
T ss_dssp             -------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE-CTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred             -------------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE-CCCCCCChhhHHHHHHHHHhCCCc
Confidence                         01122567888888888887655555543     56888888 88888886    778888888889


Q ss_pred             CeeeCCCCcCCCCCccc----c-CCCCCCCEEECCCCcCccc
Q 047519          712 ESLDLSSNMLVGHIPTQ----L-TSLKYLSVLNLSYNQFEGP  748 (892)
Q Consensus       712 ~~L~Ls~N~l~~~ip~~----l-~~l~~L~~L~ls~N~l~g~  748 (892)
                      ++|||++|++++.....    + .....|+.|++.++.+...
T Consensus       401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~  442 (461)
T 1z7x_W          401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  442 (461)
T ss_dssp             CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence            99999999887542211    1 1234677888877776543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.4e-28  Score=268.19  Aligned_cols=281  Identities=19%  Similarity=0.168  Sum_probs=229.4

Q ss_pred             CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeec
Q 047519          411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNF  490 (892)
Q Consensus       411 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l  490 (892)
                      .++.....+.+++.++.+|..+.  ++|++|++++|.+++..+..+..+  ++|++|++++|.+++..+..+..+.    
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~----  100 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRC--VNLQALVLTSNGINTIEEDSFSSLG----  100 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred             CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccC--CCCCEEECCCCccCccCHhhcCCCC----
Confidence            45555667888888888887554  589999999999987666677777  8999999999999888777777766    


Q ss_pred             CCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCC-ccccCCCCCcEEEccCC-CCCCCcchhccCCCCC
Q 047519          491 DSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP-LSLVNCHHLEVLDVGNN-QINDNFPNWLEILPEL  568 (892)
Q Consensus       491 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L  568 (892)
                          +|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|
T Consensus       101 ----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A          101 ----SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             ----TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             ----CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence                88999999999987666668899999999999999995443 47889999999999999 5776667788999999


Q ss_pred             CEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519          569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI  648 (892)
Q Consensus       569 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (892)
                      ++|++++|++++..|..+  ..+++|++|++++|+++ .+|..+                                    
T Consensus       177 ~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~-~~~~~~------------------------------------  217 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQHI-LLLEIF------------------------------------  217 (353)
T ss_dssp             EEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCST-THHHHH------------------------------------
T ss_pred             CEEECCCCCcCccCHHHH--hccccCCeecCCCCccc-cchhhh------------------------------------
Confidence            999999999988878777  88899999999999985 334322                                    


Q ss_pred             ccchhhHHHhhhhheeeecCCCcCCCCChhhhc---CccccccccccCCCCCCC----CcchhccCCCCCCeeeCCCCcC
Q 047519          649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVG---KLNLLKGLNNISHNNLTG----DIPSLLRNLTEVESLDLSSNML  721 (892)
Q Consensus       649 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~---~l~~L~~L~~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l  721 (892)
                             ...+++|+.|++++|++++..+..+.   ....++.++ +++|.+++    .+|..++++++|+.|||++|++
T Consensus       218 -------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~-L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          218 -------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT-FRNVKITDESLFQVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             -------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE-EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred             -------hhhcccccEEECCCCccccccccccccccccchhhccc-cccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence                   22267899999999999976655443   356677777 88888875    4788999999999999999999


Q ss_pred             CCCCccc-cCCCCCCCEEECCCCcCcccCCC
Q 047519          722 VGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       722 ~~~ip~~-l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      + .+|.. |..+++|++|++++|+++|.+|.
T Consensus       290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             C-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            9 56665 68999999999999999998874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-30  Score=307.89  Aligned_cols=458  Identities=14%  Similarity=0.069  Sum_probs=241.4

Q ss_pred             CCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCC---CCCCCCcCc------------CC
Q 047519           50 DCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFN---YSEISSGFS------------QL  114 (892)
Q Consensus        50 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~p~~~~------------~l  114 (892)
                      -|++|.++.+..+ .++   .+.. ......+.  .+..+++|++|+|+++...   +. +|..++            .+
T Consensus        40 vck~W~~~~~~~~-~~l---~~~~-~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~  111 (592)
T 3ogk_B           40 VCRRWFKIDSETR-EHV---TMAL-CYTATPDR--LSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNL  111 (592)
T ss_dssp             SCHHHHHHHHHHC-CEE---EESC-GGGSCHHH--HHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHC
T ss_pred             HhHHHHHhhhccc-cEE---EEee-ccccChHH--HHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhC
Confidence            4568999965322 222   2222 11222222  4567889999999875421   11 343333            67


Q ss_pred             CCCCeEeCCCCCCccccCCCCCcccC--CCCceecCCccc--CCcchhhhhhcccCCCCCCCEEecCCccCccccc----
Q 047519          115 RSLTLLNLSSSNFMGSIPASIDLINV--SRLSTNYLPIFA--FSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAE----  186 (892)
Q Consensus       115 ~~L~~L~Ls~n~~~~~~p~~l~~~~L--~~L~~L~Ls~~~--~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~----  186 (892)
                      ++|++|+|++|.+++..+..++  ..  .+|++|+++++.  ....++..+.    ++++|++|+|++|.+.+...    
T Consensus       112 ~~L~~L~L~~~~i~~~~~~~l~--~~~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~L~~~~~~~~~~~~l~  185 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLDRLA--KARADDLETLKLDKCSGFTTDGLLSIVT----HCRKIKTLLMEESSFSEKDGKWLH  185 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHH--HHHGGGCCEEEEESCEEEEHHHHHHHHH----HCTTCSEEECTTCEEECCCSHHHH
T ss_pred             CCCCeEEeeccEecHHHHHHHH--HhccccCcEEECcCCCCcCHHHHHHHHh----hCCCCCEEECccccccCcchhHHH
Confidence            8888888888877766555555  42  236777666533  1112233333    55666666666665543321    


Q ss_pred             cc-CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCccee
Q 047519          187 KE-NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTL  265 (892)
Q Consensus       187 ~~-~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  265 (892)
                      .. ..+  ++|++|++++|  .+++..+..+.            ..+.++++|++|++++|.+.+               
T Consensus       186 ~~~~~~--~~L~~L~L~~n--~~~~~~~~~l~------------~~~~~~~~L~~L~L~~~~~~~---------------  234 (592)
T 3ogk_B          186 ELAQHN--TSLEVLNFYMT--EFAKISPKDLE------------TIARNCRSLVSVKVGDFEILE---------------  234 (592)
T ss_dssp             HHHHHC--CCCCEEECTTC--CCSSCCHHHHH------------HHHHHCTTCCEEECSSCBGGG---------------
T ss_pred             HHHhcC--CCccEEEeecc--CCCccCHHHHH------------HHHhhCCCCcEEeccCccHHH---------------
Confidence            11 344  55555555555  44322111110            223344445555544442211               


Q ss_pred             cccceeecChhhhcCCCCCcEEEccCCCCC---cCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcC
Q 047519          266 GQSVNGYVDSDYIGDLDKRRSITGYVFNFA---GGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYA  342 (892)
Q Consensus       266 ~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~  342 (892)
                             +|. .+..+++|++|+++.+...   +..+.                          .+       ..+++|+
T Consensus       235 -------l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~--------------------------~l-------~~~~~L~  273 (592)
T 3ogk_B          235 -------LVG-FFKAAANLEEFCGGSLNEDIGMPEKYM--------------------------NL-------VFPRKLC  273 (592)
T ss_dssp             -------GHH-HHHHCTTCCEEEECBCCCCTTCTTSSS--------------------------CC-------CCCTTCC
T ss_pred             -------HHH-HHhhhhHHHhhcccccccccchHHHHH--------------------------Hh-------hcccccc
Confidence                   222 3444444555544432111   11222                          33       4455555


Q ss_pred             EEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEcc
Q 047519          343 EPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLS  421 (892)
Q Consensus       343 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~  421 (892)
                      .|+++++.. +.+|..+..+++|++|++++|.+++......+..+++|++|+++++  ...+.++... .+++|++|+++
T Consensus       274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEee
Confidence            555555422 2455555566666666666666553332233466666777766633  1122222222 45667777776


Q ss_pred             C-----------CCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhhh-hCCCcccEEEcc----CCCCCCCCCCCCC
Q 047519          422 A-----------CNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMWD-LGITALYYLDLS----NNFLTNIEYFPPT  483 (892)
Q Consensus       422 ~-----------n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~~~L~~L~Ls----~n~l~~~~~~~~~  483 (892)
                      +           +.++  .++.....+++|++|+++.|.+++..+..+.. +  ++|+.|+++    .|.+++.+...  
T Consensus       351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~~L~~L~l~~~~~~n~l~~~p~~~--  426 (592)
T 3ogk_B          351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL--KNLCDFRLVLLDREERITDLPLDN--  426 (592)
T ss_dssp             CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC--CSCCEEEEEECSCCSCCSSCCCHH--
T ss_pred             cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC--CCCcEEEEeecCCCccccCchHHH--
Confidence            2           4454  24444556788888888777777665555554 4  778888885    44555431100  


Q ss_pred             CCCeeecCCCCcccEEECCCCc--cCcccccccc-CCCCCCEEEccCCCCCC-CCCccccCCCCCcEEEccCCCCCCC-c
Q 047519          484 NMTQLNFDSNLTHKVLDMRMNN--FNGKISQKFV-NSCNLTNLNLNGNRLEG-PLPLSLVNCHHLEVLDVGNNQINDN-F  558 (892)
Q Consensus       484 ~l~~L~l~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~-~  558 (892)
                      .+.. .+.++++|+.|++++|.  +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|+|++|.+++. +
T Consensus       427 ~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          427 GVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence            0000 01123366777775433  5544444443 36778888888888765 2344556778888888888887654 3


Q ss_pred             chhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCC
Q 047519          559 PNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHN  602 (892)
Q Consensus       559 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  602 (892)
                      +..+..+++|++|++++|+++......+ ...++.+.+..+..+
T Consensus       506 ~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTEEEEEECCC
T ss_pred             HHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCcEEEEecCc
Confidence            3334567888888888888765433222 134566666555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.5e-27  Score=254.65  Aligned_cols=252  Identities=25%  Similarity=0.265  Sum_probs=203.2

Q ss_pred             CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEc
Q 047519          342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGL  420 (892)
Q Consensus       342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L  420 (892)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.+...+..+... .+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            56777787777 5565443  68889999998887 455466788889999999988544333333333 6788888999


Q ss_pred             cCCCCCCcchhhhCCCCccEEEccCCCCCCCCc-hhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEE
Q 047519          421 SACNISEFPDILRTLHQLQWFNLSKNRIHGRIS-SWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVL  499 (892)
Q Consensus       421 ~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L  499 (892)
                      ++|.++.+|..+..+++|++|++++|.+++..+ ..+..+  ++|++|++++|.+++..+..+..+.        +|++|
T Consensus        86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~--------~L~~L  155 (306)
T 2z66_A           86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL--RNLIYLDISHTHTRVAFNGIFNGLS--------SLEVL  155 (306)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTC--TTCCEEECTTSCCEECSTTTTTTCT--------TCCEE
T ss_pred             CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhc--cCCCEEECCCCcCCccchhhcccCc--------CCCEE
Confidence            888888888888889999999999999886554 456666  8999999999998888777766665        88999


Q ss_pred             ECCCCccCc-cccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519          500 DMRMNNFNG-KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF  578 (892)
Q Consensus       500 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  578 (892)
                      ++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            999998887 5788888899999999999999887788888999999999999999887777788899999999999999


Q ss_pred             CCCCCCCCCCcCCC-CccEEEcCCCCCcCcCC
Q 047519          579 WGPIGDNTTIVPFP-RFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       579 ~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p  609 (892)
                      ++..|..+  ..++ +|++|++++|++++..+
T Consensus       236 ~~~~~~~~--~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          236 MTSKKQEL--QHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CBCSSSSC--CCCCTTCCEEECTTCCEECSGG
T ss_pred             cccCHHHH--HhhhccCCEEEccCCCeecccC
Confidence            88888766  6664 89999999999886544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=5e-27  Score=253.46  Aligned_cols=208  Identities=21%  Similarity=0.235  Sum_probs=166.6

Q ss_pred             cccEEECCCCccCc--cccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEE
Q 047519          495 THKVLDMRMNNFNG--KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVL  571 (892)
Q Consensus       495 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L  571 (892)
                      +|++|++++|.++.  ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus        53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             cCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            44555555555442  23455666778888888888887 466678888888888888888877544 567788888888


Q ss_pred             EccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC-cCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEcc
Q 047519          572 ILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG-VLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKG  650 (892)
Q Consensus       572 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (892)
                      ++++|.+.+..+..+  ..+++|++|++++|.+++ .+|..+ .                                    
T Consensus       132 ~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~-~------------------------------------  172 (306)
T 2z66_A          132 DISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIF-T------------------------------------  172 (306)
T ss_dssp             ECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSCC-T------------------------------------
T ss_pred             ECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhHH-h------------------------------------
Confidence            888888877777666  778889999999998876 344332 1                                    


Q ss_pred             chhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccC
Q 047519          651 IDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLT  730 (892)
Q Consensus       651 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  730 (892)
                             .+++|+.|++++|++++..|..+..+++|+.|+ +++|++++..+..+..+++|+.|||++|++++..|..+.
T Consensus       173 -------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          173 -------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN-MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             -------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             -------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE-CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence                   166788999999999988888999999999998 999999988888899999999999999999999999999


Q ss_pred             CCC-CCCEEECCCCcCcccCC
Q 047519          731 SLK-YLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       731 ~l~-~L~~L~ls~N~l~g~iP  750 (892)
                      .++ +|++|++++|++++..+
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGG
T ss_pred             hhhccCCEEEccCCCeecccC
Confidence            984 99999999999997654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.5e-26  Score=259.29  Aligned_cols=232  Identities=21%  Similarity=0.194  Sum_probs=174.3

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519          463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH  542 (892)
Q Consensus       463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  542 (892)
                      +++.|++++|++++..+..+..+.        +|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~--------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  147 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLH--------HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS  147 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCT--------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred             CccEEECcCCcCceECHHHcCCCC--------CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence            444444444444444444444443        555666666666655566677777777777777777766566677778


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519          543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG  622 (892)
Q Consensus       543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l  622 (892)
                      +|++|+|++|+++...+..|..+++|+.|++++|...+.++.. .+..+++|++|++++|++++. |.  +.        
T Consensus       148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~-~~--~~--------  215 (452)
T 3zyi_A          148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKDM-PN--LT--------  215 (452)
T ss_dssp             TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSSC-CC--CT--------
T ss_pred             CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCccccc-cc--cc--------
Confidence            8888888888877765667777888888888875544444442 136788888888888888743 32  11        


Q ss_pred             cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc
Q 047519          623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP  702 (892)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip  702 (892)
                                                         .+++|+.|+|++|++++..|..|.++++|+.|+ +++|++++..|
T Consensus       216 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~  259 (452)
T 3zyi_A          216 -----------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW-VMNSQVSLIER  259 (452)
T ss_dssp             -----------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE-CTTSCCCEECT
T ss_pred             -----------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEE-eCCCcCceECH
Confidence                                               156788999999999988899999999999998 99999999889


Q ss_pred             hhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519          703 SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       703 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      ..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+...
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999999999998888889999999999999999987654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.4e-26  Score=245.41  Aligned_cols=210  Identities=20%  Similarity=0.162  Sum_probs=151.8

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCC-CCCCcchhccCCCCCCEEEc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQ-INDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L  573 (892)
                      ++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+ +....|..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            55666666666666555666677777777777777776666677777777777777776 66655667777777777777


Q ss_pred             cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519          574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI  653 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (892)
                      ++|.+++..+..+  ..+++|++|++++|++++..+.. +..                                      
T Consensus       113 ~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~--------------------------------------  151 (285)
T 1ozn_A          113 DRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT-FRD--------------------------------------  151 (285)
T ss_dssp             TTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT--------------------------------------
T ss_pred             CCCcCCEECHhHh--hCCcCCCEEECCCCcccccCHhH-hcc--------------------------------------
Confidence            7777766666555  66777777777777776443322 111                                      


Q ss_pred             hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519          654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK  733 (892)
Q Consensus       654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  733 (892)
                           +++|+.|++++|++++..+..+..+++|+.|+ +++|++++..|..|+++++|+.|+|++|++++..+..+..++
T Consensus       152 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          152 -----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             -----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             -----CCCccEEECCCCcccccCHHHhcCccccCEEE-CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence                 55677788888877765556677888888887 888888877788888888888888888888876667788888


Q ss_pred             CCCEEECCCCcCcccCCC
Q 047519          734 YLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       734 ~L~~L~ls~N~l~g~iP~  751 (892)
                      +|+.|++++|++++..+.
T Consensus       226 ~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          226 ALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TCCEEECCSSCEECSGGG
T ss_pred             ccCEEeccCCCccCCCCc
Confidence            888888888888876654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=8.6e-26  Score=256.75  Aligned_cols=233  Identities=21%  Similarity=0.205  Sum_probs=186.9

Q ss_pred             CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC
Q 047519          462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC  541 (892)
Q Consensus       462 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  541 (892)
                      ++++.|++++|++++..+..+..+.        +|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~--------~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  135 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLR--------HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL  135 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCS--------SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCC--------CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence            4455555555555555555554444        66777777777776667778888888888888888886666678888


Q ss_pred             CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519          542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH  621 (892)
Q Consensus       542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  621 (892)
                      ++|++|+|++|+++...+..|..+++|++|++++|...+.++.. .+..+++|++|++++|+++ .+|.  +.       
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-~~~~--~~-------  204 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-EIPN--LT-------  204 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-SCCC--CT-------
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-cccc--cC-------
Confidence            89999999999888866777888899999999886555555542 1378889999999999887 3442  11       


Q ss_pred             ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc
Q 047519          622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI  701 (892)
Q Consensus       622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i  701 (892)
                                                          .+++|+.|||++|++++..|..|.++++|+.|+ |++|++++..
T Consensus       205 ------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~  247 (440)
T 3zyj_A          205 ------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW-MIQSQIQVIE  247 (440)
T ss_dssp             ------------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE-CTTCCCCEEC
T ss_pred             ------------------------------------CCcccCEEECCCCccCccChhhhccCccCCEEE-CCCCceeEEC
Confidence                                                156789999999999988899999999999998 9999999999


Q ss_pred             chhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519          702 PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       702 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      |..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+...
T Consensus       248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            9999999999999999999998888889999999999999999986543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=3.9e-29  Score=296.25  Aligned_cols=433  Identities=12%  Similarity=0.018  Sum_probs=275.4

Q ss_pred             cccccCCCCCEEEcccCCCC---CcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCC-
Q 047519          230 KDLGEAKKILGMEICRNRTC---GKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTL-  305 (892)
Q Consensus       230 ~~l~~l~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-  305 (892)
                      ..+..+++|++|++++|...   +.+|...+..         ....++. ....+++|++|+|++|.+++..+.+++.. 
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~---------~~~~l~~-l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  136 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGY---------VTPWVTE-ISNNLRQLKSVHFRRMIVSDLDLDRLAKAR  136 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCB---------CHHHHHH-HHHHCTTCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEecCCcchhhccccccccccc---------chHHHHH-HHhhCCCCCeEEeeccEecHHHHHHHHHhc
Confidence            45567889999999887431   2222222110         0001111 23378889999999888877666666553 


Q ss_pred             C-CCcEEecCcccccccee--ecc-chhhhhhccCCCCCcCEEEccCCcCCcC----CCccccCCCCCCEEECcCCcCCC
Q 047519          306 Q-STVVLSTTEAEYMAITK--AVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGS----IPSSVYELENLILLRLPSNRLSG  377 (892)
Q Consensus       306 ~-~L~~L~l~~~~~n~l~~--~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~  377 (892)
                      + +|++|+++   +|....  .++ ..       .++++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       137 ~~~L~~L~L~---~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~  206 (592)
T 3ogk_B          137 ADDLETLKLD---KCSGFTTDGLLSIV-------THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK  206 (592)
T ss_dssp             GGGCCEEEEE---SCEEEEHHHHHHHH-------HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS
T ss_pred             cccCcEEECc---CCCCcCHHHHHHHH-------hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc
Confidence            3 48999988   665211  111 22       4678889999998887765    33345577888889998888862


Q ss_pred             ----ccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCC----CcchhhhCCCCccEEEccCCCC
Q 047519          378 ----TTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNIS----EFPDILRTLHQLQWFNLSKNRI  448 (892)
Q Consensus       378 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~Ls~n~l  448 (892)
                          .++ ..+.++++|++|++++|  .+.+ ++... .+++|++|+++.+...    ..+..+..+++|+.|+++++..
T Consensus       207 ~~~~~l~-~~~~~~~~L~~L~L~~~--~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  282 (592)
T 3ogk_B          207 ISPKDLE-TIARNCRSLVSVKVGDF--EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP  282 (592)
T ss_dssp             CCHHHHH-HHHHHCTTCCEEECSSC--BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT
T ss_pred             cCHHHHH-HHHhhCCCCcEEeccCc--cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch
Confidence                223 34567888888888888  4444 33333 6788888888754322    3334567778888888887543


Q ss_pred             CCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCc-cccccccCCCCCCEEEccC
Q 047519          449 HGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KISQKFVNSCNLTNLNLNG  527 (892)
Q Consensus       449 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~  527 (892)
                       +.+|..+..+  ++|++|++++|.+++.....       .+..+++|++|+++ +.+.+ .++..+..+++|++|++++
T Consensus       283 -~~l~~~~~~~--~~L~~L~Ls~~~l~~~~~~~-------~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          283 -NEMPILFPFA--AQIRKLDLLYALLETEDHCT-------LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             -TTGGGGGGGG--GGCCEEEETTCCCCHHHHHH-------HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             -hHHHHHHhhc--CCCcEEecCCCcCCHHHHHH-------HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence             3566666666  88888888888765432210       02233477777777 33333 3344445678888888883


Q ss_pred             -----------CCCCCC-CCccccCCCCCcEEEccCCCCCCCcchhccC-CCCCCEEEcc----CCcCCCC-----CCCC
Q 047519          528 -----------NRLEGP-LPLSLVNCHHLEVLDVGNNQINDNFPNWLEI-LPELQVLILR----SNRFWGP-----IGDN  585 (892)
Q Consensus       528 -----------n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~  585 (892)
                                 |.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++.     ++..
T Consensus       352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~  431 (592)
T 3ogk_B          352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL  431 (592)
T ss_dssp             CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred             CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence                       455532 2222445788888888888887766666654 7888888886    5566542     1111


Q ss_pred             CCCcCCCCccEEEcCCCC--CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhhe
Q 047519          586 TTIVPFPRFRIIDLSHNE--FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM  663 (892)
Q Consensus       586 ~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  663 (892)
                      +  ..+++|+.|++++|.  +++..+..                                           ....+++|+
T Consensus       432 ~--~~~~~L~~L~L~~~~~~l~~~~~~~-------------------------------------------~~~~~~~L~  466 (592)
T 3ogk_B          432 L--IGCKKLRRFAFYLRQGGLTDLGLSY-------------------------------------------IGQYSPNVR  466 (592)
T ss_dssp             H--HHCTTCCEEEEECCGGGCCHHHHHH-------------------------------------------HHHSCTTCC
T ss_pred             H--HhCCCCCEEEEecCCCCccHHHHHH-------------------------------------------HHHhCccce
Confidence            2  457788888887543  44222111                                           111256788


Q ss_pred             eeecCCCcCCC-CChhhhcCccccccccccCCCCCCCC-cchhccCCCCCCeeeCCCCcCCCCCcccc-CCCCCCCEEEC
Q 047519          664 TIDLSSNKFQG-GIPEVVGKLNLLKGLNNISHNNLTGD-IPSLLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNL  740 (892)
Q Consensus       664 ~LdLs~N~l~~-~~p~~~~~l~~L~~L~~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~l  740 (892)
                      .|++++|++++ .++..+.++++|+.|+ +++|++++. ++..+..+++|+.|+|++|+++......+ ..++.+....+
T Consensus       467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~-l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~  545 (592)
T 3ogk_B          467 WMLLGYVGESDEGLMEFSRGCPNLQKLE-MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI  545 (592)
T ss_dssp             EEEECSCCSSHHHHHHHHTCCTTCCEEE-EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEE
T ss_pred             EeeccCCCCCHHHHHHHHhcCcccCeee-ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEe
Confidence            88888888875 3455667888888898 999888754 44555678889999999998886543333 34666666655


Q ss_pred             CCC
Q 047519          741 SYN  743 (892)
Q Consensus       741 s~N  743 (892)
                      ..+
T Consensus       546 ~~~  548 (592)
T 3ogk_B          546 PSR  548 (592)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.3e-26  Score=250.19  Aligned_cols=201  Identities=17%  Similarity=0.236  Sum_probs=146.2

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc---------CC
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE---------IL  565 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~---------~l  565 (892)
                      +|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.         ++
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            4444444444444 44555566666666666666666 5566666666666666666666666665544         37


Q ss_pred             CCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEE
Q 047519          566 PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESII  645 (892)
Q Consensus       566 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (892)
                      ++|++|++++|+++ .+|..+  ..+++|++|++++|++++ +|..+ .                               
T Consensus       183 ~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~-l~~~l-~-------------------------------  226 (328)
T 4fcg_A          183 VNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSA-LGPAI-H-------------------------------  226 (328)
T ss_dssp             TTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCC-CCGGG-G-------------------------------
T ss_pred             CCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCc-Cchhh-c-------------------------------
Confidence            78888888888776 566554  677788888888888874 44332 1                               


Q ss_pred             EEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCC
Q 047519          646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHI  725 (892)
Q Consensus       646 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  725 (892)
                                  .+++|+.|++++|++.+.+|..++++++|+.|+ +++|++.+.+|..++++++|+.|+|++|++.+.+
T Consensus       227 ------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~-L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          227 ------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI-LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             ------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE-CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             ------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE-CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence                        156788888888888888888888888888888 8888888888888888888888888888888888


Q ss_pred             ccccCCCCCCCEEECCCCcCc
Q 047519          726 PTQLTSLKYLSVLNLSYNQFE  746 (892)
Q Consensus       726 p~~l~~l~~L~~L~ls~N~l~  746 (892)
                      |..+..+++|+.+++..|.+.
T Consensus       294 P~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CGGGGGSCTTCEEECCGGGSC
T ss_pred             cHHHhhccCceEEeCCHHHHH
Confidence            888888888888888877664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=5.9e-26  Score=242.29  Aligned_cols=234  Identities=19%  Similarity=0.175  Sum_probs=155.1

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCC
Q 047519          463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNC  541 (892)
Q Consensus       463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l  541 (892)
                      +|++|++++|.+++..+..+..+.        +|++|++++|.+++..|..|..+++|++|++++|. +.+..|..+..+
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l  104 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACR--------NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCT--------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CceEEEeeCCcCCccCHHHcccCC--------CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence            344444444444444333333333        55555555555555555666666777777777775 665556667777


Q ss_pred             CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519          542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH  621 (892)
Q Consensus       542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  621 (892)
                      ++|++|++++|++++..|..+..+++|++|++++|++++..+..+  ..+++|++|++++|++++..+.. +..      
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~------  175 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERA-FRG------  175 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTT-TTT------
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHH-hcC------
Confidence            777777777777777666677777777777777777766555444  66777778888877777433322 111      


Q ss_pred             ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc
Q 047519          622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI  701 (892)
Q Consensus       622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i  701 (892)
                                                           +++|+.|++++|++++..|..+.++++|+.|+ +++|++++..
T Consensus       176 -------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~  217 (285)
T 1ozn_A          176 -------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY-LFANNLSALP  217 (285)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCSCCC
T ss_pred             -------------------------------------ccccCEEECCCCcccccCHhHccCcccccEee-CCCCcCCcCC
Confidence                                                 56677888888888877788888888888887 8888888777


Q ss_pred             chhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC
Q 047519          702 PSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG  752 (892)
Q Consensus       702 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  752 (892)
                      |..+..+++|+.|+|++|.+....+.. .-...++.+..+.|.+.+..|..
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            777888888888888888887654421 11123445557788888888864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=253.96  Aligned_cols=252  Identities=17%  Similarity=0.159  Sum_probs=215.2

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519          463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH  542 (892)
Q Consensus       463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  542 (892)
                      ....++.+++.++.++.....           +++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.+++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~-----------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~  112 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIST-----------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA  112 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCT-----------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred             CCCEEEeCCCCcCcCCCCCCC-----------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence            355677777777765443222           778999999999988889999999999999999999988888999999


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519          543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG  622 (892)
Q Consensus       543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l  622 (892)
                      +|++|+|++|++++..+..|..+++|++|++++|++.+..+..+  ..+++|++|++++|+..+.+|...+.+       
T Consensus       113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------  183 (440)
T 3zyj_A          113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEGAFEG-------  183 (440)
T ss_dssp             SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT-------
T ss_pred             cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcchhhc-------
Confidence            99999999999998777789999999999999999987666555  889999999999976655666443321       


Q ss_pred             cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc
Q 047519          623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP  702 (892)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip  702 (892)
                                                          +++|+.|+|++|+++ .+| .+..+++|+.|+ |++|++++..|
T Consensus       184 ------------------------------------l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~-Ls~N~l~~~~~  224 (440)
T 3zyj_A          184 ------------------------------------LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD-LSGNHLSAIRP  224 (440)
T ss_dssp             ------------------------------------CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE-CTTSCCCEECT
T ss_pred             ------------------------------------ccccCeecCCCCcCc-ccc-ccCCCcccCEEE-CCCCccCccCh
Confidence                                                678999999999999 566 488999999999 99999999889


Q ss_pred             hhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCC
Q 047519          703 SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       703 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~  773 (892)
                      ..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+....+.+||+.|+|.
T Consensus       225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99999999999999999999999999999999999999999999655543 345667778899999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1e-24  Score=255.16  Aligned_cols=262  Identities=23%  Similarity=0.235  Sum_probs=138.2

Q ss_pred             CCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEc
Q 047519          364 NLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNL  443 (892)
Q Consensus       364 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L  443 (892)
                      +++.|++++|.++ .+| ..+.  ++|++|++++|.+  . .+|.  .+++|++|++++|+++.+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l--~-~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNL--T-SLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCC--S-CCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCC--C-CCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence            5778888888877 555 2332  6777777777733  2 2222  45666777777776666665   4566666666


Q ss_pred             cCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEE
Q 047519          444 SKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNL  523 (892)
Q Consensus       444 s~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  523 (892)
                      ++|.+++. |.   .+  ++|+.|++++|+++++++                                 .   +++|++|
T Consensus       109 s~N~l~~l-~~---~l--~~L~~L~L~~N~l~~lp~---------------------------------~---l~~L~~L  146 (622)
T 3g06_A          109 FSNPLTHL-PA---LP--SGLCKLWIFGNQLTSLPV---------------------------------L---PPGLQEL  146 (622)
T ss_dssp             CSCCCCCC-CC---CC--TTCCEEECCSSCCSCCCC---------------------------------C---CTTCCEE
T ss_pred             cCCcCCCC-CC---CC--CCcCEEECCCCCCCcCCC---------------------------------C---CCCCCEE
Confidence            66666642 22   12  556666666666554322                                 1   1344444


Q ss_pred             EccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCC
Q 047519          524 NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNE  603 (892)
Q Consensus       524 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  603 (892)
                      ++++|++++ +|.   .+++|+.|++++|++++ +|   ..+++|+.|++++|.+++ +|.     .+++|+.|++++|.
T Consensus       147 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~  212 (622)
T 3g06_A          147 SVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNR  212 (622)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSC
T ss_pred             ECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCc
Confidence            444444442 222   12344455555555444 23   233445555555555443 221     12445555555555


Q ss_pred             CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCc
Q 047519          604 FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL  683 (892)
Q Consensus       604 l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  683 (892)
                      ++ .+|..                                               +++|+.|++++|+|++ +|   ..+
T Consensus       213 l~-~l~~~-----------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          213 LT-SLPAL-----------------------------------------------PSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             CS-SCCCC-----------------------------------------------CTTCCEEECCSSCCSC-CC---CCC
T ss_pred             cc-ccCCC-----------------------------------------------CCCCCEEEccCCccCc-CC---CCC
Confidence            54 22211                                               2345555555555553 33   334


Q ss_pred             cccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519          684 NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       684 ~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      ++|+.|+ +++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++|.+|.
T Consensus       241 ~~L~~L~-Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          241 SELKELM-VSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TTCCEEE-CCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcCcEEE-CCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            5555555 6666665 3443   3455666666666665 5555566666666666666666655553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3e-26  Score=252.69  Aligned_cols=278  Identities=17%  Similarity=0.168  Sum_probs=228.8

Q ss_pred             CCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccc
Q 047519          434 TLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK  513 (892)
Q Consensus       434 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~  513 (892)
                      .++.....+.+++.++ .+|..+.    ++|++|++++|.+++..+..+..+.        +|++|++++|.+++..|..
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~--------~L~~L~L~~n~l~~~~~~~   95 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRITYISNSDLQRCV--------NLQALVLTSNGINTIEEDS   95 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCCCEECTTTTTTCT--------TCCEEECTTSCCCEECTTT
T ss_pred             CCCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcCcccCHHHhccCC--------CCCEEECCCCccCccCHhh
Confidence            3556667899999998 5666543    6899999999999988777777766        9999999999999888888


Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEEccCCc-CCCCCCCCCCCcCC
Q 047519          514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGDNTTIVPF  591 (892)
Q Consensus       514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l  591 (892)
                      |..+++|++|++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++|. +.+..+..+  ..+
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l  173 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGL  173 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTC
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCC
Confidence            9999999999999999996655568999999999999999987444 478899999999999995 555545555  889


Q ss_pred             CCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCc
Q 047519          592 PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNK  671 (892)
Q Consensus       592 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  671 (892)
                      ++|++|++++|++++..|..+ .+                                           +++|+.|++++|+
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~l-~~-------------------------------------------l~~L~~L~l~~n~  209 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKSL-KS-------------------------------------------IQNVSHLILHMKQ  209 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTTT-TT-------------------------------------------CSEEEEEEEECSC
T ss_pred             CCCCEEECCCCCcCccCHHHH-hc-------------------------------------------cccCCeecCCCCc
Confidence            999999999999997766543 11                                           6789999999999


Q ss_pred             CCCCChhh-hcCccccccccccCCCCCCCCcchhcc---CCCCCCeeeCCCCcCCC----CCccccCCCCCCCEEECCCC
Q 047519          672 FQGGIPEV-VGKLNLLKGLNNISHNNLTGDIPSLLR---NLTEVESLDLSSNMLVG----HIPTQLTSLKYLSVLNLSYN  743 (892)
Q Consensus       672 l~~~~p~~-~~~l~~L~~L~~Ls~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N  743 (892)
                      ++ .+|.. +..+++|+.|+ +++|++++..+..+.   ..+.++.++|++|.+++    .+|..+..+++|+.|++++|
T Consensus       210 l~-~~~~~~~~~~~~L~~L~-L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          210 HI-LLLEIFVDVTSSVECLE-LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             ST-THHHHHHHHTTTEEEEE-EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             cc-cchhhhhhhcccccEEE-CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            97 55554 55689999998 999999987665543   46778899999999886    47888999999999999999


Q ss_pred             cCcccCCCC--CCCCcccCCccCCCCCCCCCC
Q 047519          744 QFEGPIPQG--SQFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       744 ~l~g~iP~~--~~~~~~~~~~~~gN~~lc~~~  773 (892)
                      +++ .+|..  ..+..+....+.+|+..|.+|
T Consensus       288 ~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          288 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            999 67764  356677788889999888764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.2e-25  Score=254.32  Aligned_cols=252  Identities=17%  Similarity=0.131  Sum_probs=214.7

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519          464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHH  543 (892)
Q Consensus       464 L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  543 (892)
                      ...++.+++.++.++.. ++          +++++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++
T Consensus        56 ~~~v~c~~~~l~~iP~~-~~----------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQG-IP----------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             SCEEECCSSCCSSCCSC-CC----------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CcEEEECCCCcCccCCC-CC----------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            45677777777765432 22          27889999999999988999999999999999999999888889999999


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhccc
Q 047519          544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN  623 (892)
Q Consensus       544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~  623 (892)
                      |++|+|++|++++..+..|..+++|++|+|++|++.+..+..+  ..+++|++|++++|+..+.+|...+.+        
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------  194 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG--------  194 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------
Confidence            9999999999999777889999999999999999986655555  889999999999966655666443221        


Q ss_pred             CCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcch
Q 047519          624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPS  703 (892)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~  703 (892)
                                                         +++|+.|+|++|++++ +| .+..+++|+.|+ |++|++++..|.
T Consensus       195 -----------------------------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~-Ls~N~l~~~~~~  236 (452)
T 3zyi_A          195 -----------------------------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE-MSGNHFPEIRPG  236 (452)
T ss_dssp             -----------------------------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEE-CTTSCCSEECGG
T ss_pred             -----------------------------------CCCCCEEECCCCcccc-cc-cccccccccEEE-CcCCcCcccCcc
Confidence                                               6789999999999995 45 588999999999 999999999999


Q ss_pred             hccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCCCC
Q 047519          704 LLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGFPL  774 (892)
Q Consensus       704 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~~~  774 (892)
                      .|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|.. ..+..+....+.+||+-|++.+
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999999999999999999999999999999999999999655543 2455677788999999998753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.4e-28  Score=260.42  Aligned_cols=205  Identities=20%  Similarity=0.221  Sum_probs=149.2

Q ss_pred             cccEEECCCCccCccccccc--cCCCCCCEEEccCCCCCCCCCccccCC-----CCCcEEEccCCCCCCCcchhccCCCC
Q 047519          495 THKVLDMRMNNFNGKISQKF--VNSCNLTNLNLNGNRLEGPLPLSLVNC-----HHLEVLDVGNNQINDNFPNWLEILPE  567 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~  567 (892)
                      +|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++++..|..|+.+++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            45555555555555555554  6677777777777777765 6666655     77888888888887776677778888


Q ss_pred             CCEEEccCCcCCCCC--CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEE
Q 047519          568 LQVLILRSNRFWGPI--GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESII  645 (892)
Q Consensus       568 L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  645 (892)
                      |++|++++|++.+.+  +....+..+++|++|++++|++++. |..                                  
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~----------------------------------  219 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGV----------------------------------  219 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHH----------------------------------
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHH----------------------------------
Confidence            888888888776542  2222236678888888888888732 110                                  


Q ss_pred             EEEccchhhHHHhhhhheeeecCCCcCCCCCh-hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519          646 LTIKGIDIQIERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH  724 (892)
Q Consensus       646 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  724 (892)
                            ....+..+++|+.||+++|++++.+| ..+..+++|++|+ |++|+|+ .+|..+.  ++|+.|||++|+|++.
T Consensus       220 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~-Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          220 ------CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN-LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             ------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE-CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             ------HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE-CCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence                  01112225788899999999988775 4566788999998 9999998 7787776  8899999999999866


Q ss_pred             CccccCCCCCCCEEECCCCcCcc
Q 047519          725 IPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       725 ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                       |. +..+++|++|++++|++++
T Consensus       290 -p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 -PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hh-HhhCCCCCEEeccCCCCCC
Confidence             66 8899999999999999985

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=6.6e-25  Score=256.67  Aligned_cols=269  Identities=22%  Similarity=0.279  Sum_probs=176.9

Q ss_pred             CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519          339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL  418 (892)
Q Consensus       339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  418 (892)
                      .+++.|++++|.++ .+|..+.  ++|++|++++|.++ .+| .   .+++|++|+|++|++  .. +|.  .+++|++|
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp-~---~l~~L~~L~Ls~N~l--~~-lp~--~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP-A---LPPELRTLEVSGNQL--TS-LPV--LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCC-C---CCTTCCEEEECSCCC--SC-CCC--CCTTCCEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCC-C---cCCCCCEEEcCCCcC--Cc-CCC--CCCCCCEE
Confidence            46899999999999 7787775  89999999999998 566 2   679999999999954  32 443  68999999


Q ss_pred             EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccE
Q 047519          419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV  498 (892)
Q Consensus       419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~  498 (892)
                      ++++|.++.+|.   .+++|+.|++++|++++ +|..   +  ++|++|++++|++++... .+           .+|+.
T Consensus       107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l--~~L~~L~Ls~N~l~~l~~-~~-----------~~L~~  165 (622)
T 3g06_A          107 SIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---P--PGLQELSVSDNQLASLPA-LP-----------SELCK  165 (622)
T ss_dssp             EECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---C--TTCCEEECCSSCCSCCCC-CC-----------TTCCE
T ss_pred             ECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---C--CCCCEEECcCCcCCCcCC-cc-----------CCCCE
Confidence            999999999987   67899999999999985 5543   2  789999999988876432 11           14455


Q ss_pred             EECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519          499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF  578 (892)
Q Consensus       499 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  578 (892)
                      |++++|.+++ +|   ..+++|+.|++++|.++                        + +|.   .+++|+.|++++|.+
T Consensus       166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~------------------------~-l~~---~~~~L~~L~L~~N~l  213 (622)
T 3g06_A          166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLA------------------------S-LPT---LPSELYKLWAYNNRL  213 (622)
T ss_dssp             EECCSSCCSC-CC---CCCTTCCEEECCSSCCS------------------------C-CCC---CCTTCCEEECCSSCC
T ss_pred             EECCCCCCCC-Cc---ccCCCCcEEECCCCCCC------------------------C-CCC---ccchhhEEECcCCcc
Confidence            5555555553 22   22344455555555444                        3 222   124455555555554


Q ss_pred             CCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHh
Q 047519          579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERI  658 (892)
Q Consensus       579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (892)
                      +. +|.     .+++|+.|++++|++++ +|..                                               
T Consensus       214 ~~-l~~-----~~~~L~~L~Ls~N~L~~-lp~~-----------------------------------------------  239 (622)
T 3g06_A          214 TS-LPA-----LPSGLKELIVSGNRLTS-LPVL-----------------------------------------------  239 (622)
T ss_dssp             SS-CCC-----CCTTCCEEECCSSCCSC-CCCC-----------------------------------------------
T ss_pred             cc-cCC-----CCCCCCEEEccCCccCc-CCCC-----------------------------------------------
Confidence            32 221     12455666666665553 3311                                               


Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK  733 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  733 (892)
                      +++|+.|+|++|+|+ .+|.   .+++|+.|+ |++|+|+ .+|..|.++++|+.|+|++|.+++.+|..+..++
T Consensus       240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~-Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLPM---LPSGLLSLS-VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEE-CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCCc---ccccCcEEe-CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            344566666666666 3444   455666666 7777666 5566666777777777777777666666555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-27  Score=257.91  Aligned_cols=267  Identities=16%  Similarity=0.109  Sum_probs=171.9

Q ss_pred             ccEEEccCCCCCCcc-hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519          415 LFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN  493 (892)
Q Consensus       415 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~  493 (892)
                      ++..+++.+.+...+ ..+..+++|++|++++|.+++..|..+..+  ++|++|++++|.+++..+  +..+        
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~--~~~l--------   79 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESL--------   79 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEE--ETTC--------
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchh--hhhc--------
Confidence            344455555554333 344556678888888888887777777776  778888888877766543  3333        


Q ss_pred             CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      ++|++|++++|.+++..     ..++|++|++++|++++..+.   .+++|++|++++|++++..+..+..+++|++|++
T Consensus        80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            36777777777766432     235777777777777654332   3466777777777777765666666777777777


Q ss_pred             cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519          574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI  653 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (892)
                      ++|.+++..+..+ ...+++|++|++++|.+++. |...                                         
T Consensus       152 s~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~-~~~~-----------------------------------------  188 (317)
T 3o53_A          152 KLNEIDTVNFAEL-AASSDTLEHLNLQYNFIYDV-KGQV-----------------------------------------  188 (317)
T ss_dssp             TTSCCCEEEGGGG-GGGTTTCCEEECTTSCCCEE-ECCC-----------------------------------------
T ss_pred             CCCCCCcccHHHH-hhccCcCCEEECCCCcCccc-cccc-----------------------------------------
Confidence            7777765544433 12456777777777776643 2110                                         


Q ss_pred             hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCC-CCCccccCCC
Q 047519          654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLV-GHIPTQLTSL  732 (892)
Q Consensus       654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~l  732 (892)
                          .+++|+.|+|++|++++ +|..+..+++|+.|+ +++|+++ .+|..+..+++|+.|+|++|+++ +.+|..+..+
T Consensus       189 ----~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~-L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          189 ----VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS-LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             ----CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE-CTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             ----ccccCCEEECCCCcCCc-chhhhcccCcccEEE-CcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence                04567777777777773 444477777777776 7777777 46666777777777777777777 6666777777


Q ss_pred             CCCCEEECC-CCcCcccCCC
Q 047519          733 KYLSVLNLS-YNQFEGPIPQ  751 (892)
Q Consensus       733 ~~L~~L~ls-~N~l~g~iP~  751 (892)
                      +.|+.++++ .+.++|..|.
T Consensus       262 ~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          262 QRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHHHHHHHHSSSSC
T ss_pred             ccceEEECCCchhccCCchh
Confidence            777777777 4455555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=6.1e-27  Score=253.21  Aligned_cols=248  Identities=20%  Similarity=0.196  Sum_probs=179.5

Q ss_pred             CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCC-CCCchhhh-------hhCCCcccEEEccCCCCCCCCCCCC--
Q 047519          413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH-GRISSWMW-------DLGITALYYLDLSNNFLTNIEYFPP--  482 (892)
Q Consensus       413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~~~L~~L~Ls~n~l~~~~~~~~--  482 (892)
                      ++|+.|++++|.+ .+|..+...  |+.|++++|.+. ..+|..+.       .+  ++|++|++++|.+++..|..+  
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI--SGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT--SCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc--CCccEEEccCCcccchhHHHHHH
Confidence            3455555555555 555544433  667777777763 34454443       34  777777777777776666544  


Q ss_pred             CCCCeeecCCCCcccEEECCCCccCccccccccCC-----CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCC
Q 047519          483 TNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS-----CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDN  557 (892)
Q Consensus       483 ~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  557 (892)
                      ..+.        +|++|++++|.+++. |..+..+     ++|++|++++|++++..|..+..+++|++|++++|++.+.
T Consensus       118 ~~l~--------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          118 ATGP--------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCSC--------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             hcCC--------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            4444        777888888887766 6666655     7899999999999887778888899999999999988764


Q ss_pred             --cchhc--cCCCCCCEEEccCCcCCCC--CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccc
Q 047519          558 --FPNWL--EILPELQVLILRSNRFWGP--IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDY  631 (892)
Q Consensus       558 --~p~~~--~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~  631 (892)
                        .|..+  ..+++|++|++++|++++.  ++... +..+++|++|++++|++++..|...+..                
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----------------  251 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-AAARVQLQGLDLSHNSLRDAAGAPSCDW----------------  251 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-HHTTCCCSEEECTTSCCCSSCCCSCCCC----------------
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-HhcCCCCCEEECCCCcCCcccchhhhhh----------------
Confidence              23444  7888999999999988632  11111 1456889999999999987765332110                


Q ss_pred             cCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCC
Q 047519          632 MTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEV  711 (892)
Q Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L  711 (892)
                                                 +++|+.|+|++|+|+ .+|..+.  ++|+.|+ |++|+|++. |. +..+++|
T Consensus       252 ---------------------------l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~-Ls~N~l~~~-p~-~~~l~~L  298 (312)
T 1wwl_A          252 ---------------------------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD-LSYNRLDRN-PS-PDELPQV  298 (312)
T ss_dssp             ---------------------------CTTCCEEECTTSCCS-SCCSSCC--SEEEEEE-CCSSCCCSC-CC-TTTSCEE
T ss_pred             ---------------------------cCCCCEEECCCCccC-hhhhhcc--CCceEEE-CCCCCCCCC-hh-HhhCCCC
Confidence                                       567889999999998 7888776  8899998 999999966 66 8999999


Q ss_pred             CeeeCCCCcCCCC
Q 047519          712 ESLDLSSNMLVGH  724 (892)
Q Consensus       712 ~~L~Ls~N~l~~~  724 (892)
                      +.|+|++|++++.
T Consensus       299 ~~L~L~~N~l~~~  311 (312)
T 1wwl_A          299 GNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEECTTCTTTCC
T ss_pred             CEEeccCCCCCCC
Confidence            9999999999853

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=9e-26  Score=258.95  Aligned_cols=226  Identities=20%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             CcchhhhCCC----CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECC
Q 047519          427 EFPDILRTLH----QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMR  502 (892)
Q Consensus       427 ~lp~~l~~l~----~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~  502 (892)
                      .+|..+..+.    +|++|+|++|.+++..|..+..+  ++|++|++++|.+++..|  +..+.        +|++|+++
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~--l~~l~--------~L~~L~Ls   88 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLD--LESLS--------TLRTLDLN   88 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEE--CTTCT--------TCCEEECC
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcc--cccCC--------CCCEEEec
Confidence            4555554443    67777777777776666666665  666666666666665433  22222        55555555


Q ss_pred             CCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCC
Q 047519          503 MNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI  582 (892)
Q Consensus       503 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  582 (892)
                      +|.+++..+     .++|++|++++|.+++..+.   .+++|++|++++|.+++..|..+..                  
T Consensus        89 ~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------  142 (487)
T 3oja_A           89 NNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------  142 (487)
T ss_dssp             SSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG------------------
T ss_pred             CCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC------------------
Confidence            555543221     14455555555555433222   2344444444444444444444444                  


Q ss_pred             CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhh
Q 047519          583 GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIF  662 (892)
Q Consensus       583 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  662 (892)
                              +++|++|++++|.+++.+|..+...                                           ++.|
T Consensus       143 --------l~~L~~L~Ls~N~l~~~~~~~l~~~-------------------------------------------l~~L  171 (487)
T 3oja_A          143 --------RSRVQYLDLKLNEIDTVNFAELAAS-------------------------------------------SDTL  171 (487)
T ss_dssp             --------GSSEEEEECTTSCCCEEEGGGGGGG-------------------------------------------TTTC
T ss_pred             --------CCCCCEEECCCCCCCCcChHHHhhh-------------------------------------------CCcc
Confidence                    4445555555555544433322111                                           3344


Q ss_pred             eeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCC
Q 047519          663 MTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY  742 (892)
Q Consensus       663 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~  742 (892)
                      +.|+|++|.+++. |. ...+++|+.|+ |++|+|++. |..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++
T Consensus       172 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~-Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          172 EHLNLQYNFIYDV-KG-QVVFAKLKTLD-LSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CEEECTTSCCCEE-EC-CCCCTTCCEEE-CCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred             cEEecCCCccccc-cc-cccCCCCCEEE-CCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence            5555555555433 11 22355555555 555555532 2235555555555555555553 455555555555555555


Q ss_pred             CcCc
Q 047519          743 NQFE  746 (892)
Q Consensus       743 N~l~  746 (892)
                      |++.
T Consensus       247 N~l~  250 (487)
T 3oja_A          247 NGFH  250 (487)
T ss_dssp             CCBC
T ss_pred             CCCc
Confidence            5555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.7e-23  Score=222.15  Aligned_cols=210  Identities=21%  Similarity=0.193  Sum_probs=168.9

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      ++++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            56777777777777666677888888888888888887666678888888888888888888777788888888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCc-CCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV-LPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI  653 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (892)
                      +|.+.+..+..+  ..+++|++|++++|++++. +|..+ .                                       
T Consensus       109 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~~-~---------------------------------------  146 (276)
T 2z62_A          109 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYF-S---------------------------------------  146 (276)
T ss_dssp             TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGG-G---------------------------------------
T ss_pred             CCCccccCchhc--ccCCCCCEEECcCCccceecCchhh-c---------------------------------------
Confidence            888877666555  7788889999999888753 45432 1                                       


Q ss_pred             hHHHhhhhheeeecCCCcCCCCChhhhcCccccc----cccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCcccc
Q 047519          654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL  729 (892)
Q Consensus       654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~----~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  729 (892)
                          .+++|+.|++++|++++..+..+..+.+|+    .|+ +++|++++..+..+. ..+|+.|+|++|++++..+..|
T Consensus       147 ----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~-ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~  220 (276)
T 2z62_A          147 ----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF  220 (276)
T ss_dssp             ----GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE-CCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT
T ss_pred             ----cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee-cCCCcccccCccccC-CCcccEEECCCCceeecCHhHh
Confidence                156788899999999877777887777777    788 999999966555554 4589999999999997777778


Q ss_pred             CCCCCCCEEECCCCcCcccCCCC
Q 047519          730 TSLKYLSVLNLSYNQFEGPIPQG  752 (892)
Q Consensus       730 ~~l~~L~~L~ls~N~l~g~iP~~  752 (892)
                      ..+++|+.|++++|++++.+|.-
T Consensus       221 ~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          221 DRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TTCCSCCEEECCSSCBCCCTTTT
T ss_pred             cccccccEEEccCCcccccCCch
Confidence            99999999999999999988754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=9.1e-25  Score=250.58  Aligned_cols=217  Identities=21%  Similarity=0.164  Sum_probs=180.6

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..+     .++|++|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            67788888888887777888889999999999999986555  8889999999999999877332     3899999999


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|.+++..+.     .+++|+.|++++|.+++..|..+ +                                        
T Consensus       108 ~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~-~----------------------------------------  141 (487)
T 3oja_A          108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE-G----------------------------------------  141 (487)
T ss_dssp             SSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCG-G----------------------------------------
T ss_pred             CCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhh-c----------------------------------------
Confidence            9999876553     35789999999999998766442 2                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhc-CccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK  733 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~-~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  733 (892)
                         .+++|+.|+|++|.+++.+|..+. .+++|+.|+ |++|.|++..+  +..+++|+.|+|++|.+++. |..+..++
T Consensus       142 ---~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~-Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~  214 (487)
T 3oja_A          142 ---CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN-LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAA  214 (487)
T ss_dssp             ---GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE-CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGT
T ss_pred             ---CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe-cCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCC
Confidence               167899999999999998998886 799999999 99999996633  44699999999999999975 45599999


Q ss_pred             CCCEEECCCCcCcccCCCC-CCCCcccCCccCCCCCCCCC
Q 047519          734 YLSVLNLSYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGF  772 (892)
Q Consensus       734 ~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~  772 (892)
                      +|+.|++++|++++ +|.. ..+..+....+.||+..|++
T Consensus       215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            99999999999997 5543 34566777888999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=8.1e-27  Score=276.45  Aligned_cols=438  Identities=13%  Similarity=0.018  Sum_probs=257.9

Q ss_pred             cccccCCCCCEEEcccCCCCCcC---CccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCcccc-CC
Q 047519          230 KDLGEAKKILGMEICRNRTCGKT---MDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKS-TL  305 (892)
Q Consensus       230 ~~l~~l~~L~~L~L~~n~~~~~~---~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l  305 (892)
                      ..+..+++|++|++++|.....+   |...+         ......++. ....+++|++|++++|.+++..+..+. .+
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~---------~~~~~~l~~-l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  129 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWG---------GYVYPWIEA-MSSSYTWLEEIRLKRMVVTDDCLELIAKSF  129 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSC---------CBCHHHHHH-HHHHCTTCCEEEEESCBCCHHHHHHHHHHC
T ss_pred             HHHhhCCCceEEeccCCCchhhccccccccc---------chhhHHHHH-HHHhCCCCCeEEeeCcEEcHHHHHHHHHhC
Confidence            34567889999999987532211   11100         011111222 345788999999999998877666665 68


Q ss_pred             CCCcEEecCcccccc-ceee-cc-chhhhhhccCCCCCcCEEEccCCcCCcCCCcccc----CCCCCCEEECcCCc--CC
Q 047519          306 QSTVVLSTTEAEYMA-ITKA-VK-EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVY----ELENLILLRLPSNR--LS  376 (892)
Q Consensus       306 ~~L~~L~l~~~~~n~-l~~~-~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~L~~n~--l~  376 (892)
                      ++|++|+++   +|. +... ++ .+       .++++|++|++++|.+++..+..+.    .+++|++|++++|.  +.
T Consensus       130 ~~L~~L~L~---~~~~~~~~~l~~~~-------~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  199 (594)
T 2p1m_B          130 KNFKVLVLS---SCEGFSTDGLAAIA-------ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS  199 (594)
T ss_dssp             TTCCEEEEE---SCEEEEHHHHHHHH-------HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred             CCCcEEeCC---CcCCCCHHHHHHHH-------HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence            999999999   884 3322 33 33       5789999999999998776555444    66799999999986  32


Q ss_pred             CccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCC-------CCCcchhhhCCCCccEE-EccCCC
Q 047519          377 GTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACN-------ISEFPDILRTLHQLQWF-NLSKNR  447 (892)
Q Consensus       377 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~-------l~~lp~~l~~l~~L~~L-~Ls~n~  447 (892)
                      .......+..+++|++|++++|  ...+.++... .+++|++|+++.+.       +..++..+.++++|+.| .+.+..
T Consensus       200 ~~~l~~l~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~  277 (594)
T 2p1m_B          200 FSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV  277 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCTT--SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC
T ss_pred             HHHHHHHHHhCCCCcEEecCCC--CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc
Confidence            1111122345799999999988  3333344444 67889999876654       23455678888899888 444332


Q ss_pred             CCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc-ccccccCCCCCCEEEcc
Q 047519          448 IHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-ISQKFVNSCNLTNLNLN  526 (892)
Q Consensus       448 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  526 (892)
                      . +.++..+..+  ++|++|++++|.+++.....       .+..+++|+.|++++| +.+. ++.....+++|++|++.
T Consensus       278 ~-~~l~~~~~~~--~~L~~L~L~~~~l~~~~l~~-------~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          278 P-AYLPAVYSVC--SRLTTLNLSYATVQSYDLVK-------LLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             G-GGGGGGHHHH--TTCCEEECTTCCCCHHHHHH-------HHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             h-hhHHHHHHhh--CCCCEEEccCCCCCHHHHHH-------HHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence            2 2455555556  88888888888765432110       0122346777777766 3322 22223346778888773


Q ss_pred             C---------CCCCCCCCccc-cCCCCCcEEEccCCCCCCCcchhcc-CCCCCCEEEcc--C----CcCCCCCCCC-C--
Q 047519          527 G---------NRLEGPLPLSL-VNCHHLEVLDVGNNQINDNFPNWLE-ILPELQVLILR--S----NRFWGPIGDN-T--  586 (892)
Q Consensus       527 ~---------n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~~~~~-~--  586 (892)
                      +         +.+++.....+ ..+++|++|+++.|.+++..+..+. .+++|+.|+++  +    |.+++..... +  
T Consensus       347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~  426 (594)
T 2p1m_B          347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA  426 (594)
T ss_dssp             CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred             cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence            3         33432222222 2367777777777777665444444 46777777777  2    3332110000 0  


Q ss_pred             CCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeee
Q 047519          587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTID  666 (892)
Q Consensus       587 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  666 (892)
                      .+..+++|+.|++++ .+++..+..                                           ....+++|+.|+
T Consensus       427 l~~~~~~L~~L~L~~-~l~~~~~~~-------------------------------------------l~~~~~~L~~L~  462 (594)
T 2p1m_B          427 IVEHCKDLRRLSLSG-LLTDKVFEY-------------------------------------------IGTYAKKMEMLS  462 (594)
T ss_dssp             HHHHCTTCCEEECCS-SCCHHHHHH-------------------------------------------HHHHCTTCCEEE
T ss_pred             HHhhCCCccEEeecC-cccHHHHHH-------------------------------------------HHHhchhccEee
Confidence            013455666666655 333211111                                           011145677777


Q ss_pred             cCCCcCCCCChhhh-cCccccccccccCCCCCCCCcch-hccCCCCCCeeeCCCCcCCCCCcccc-CCCCCCCEEECCCC
Q 047519          667 LSSNKFQGGIPEVV-GKLNLLKGLNNISHNNLTGDIPS-LLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYN  743 (892)
Q Consensus       667 Ls~N~l~~~~p~~~-~~l~~L~~L~~Ls~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~L~ls~N  743 (892)
                      |++|.+++..+..+ ..+++|+.|+ |++|.+++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus       463 L~~~~i~~~~~~~l~~~~~~L~~L~-L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          463 VAFAGDSDLGMHHVLSGCDSLRKLE-IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             EESCCSSHHHHHHHHHHCTTCCEEE-EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             ccCCCCcHHHHHHHHhcCCCcCEEE-CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            77777765444444 5567777776 777777544333 33446777777777777643333333 34556655555554


Q ss_pred             cC
Q 047519          744 QF  745 (892)
Q Consensus       744 ~l  745 (892)
                      .-
T Consensus       542 ~~  543 (594)
T 2p1m_B          542 GA  543 (594)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.3e-24  Score=235.57  Aligned_cols=237  Identities=22%  Similarity=0.186  Sum_probs=146.1

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL  415 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  415 (892)
                      ..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+   +..+++|++|++++|++  .+..    ..++|
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l--~~l~----~~~~L  101 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV--QELL----VGPSI  101 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEE--EEEE----ECTTC
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcc--cccc----CCCCc
Confidence            456677777777777776666677777777777777777764433   66777777777777732  2211    12455


Q ss_pred             cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519          416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT  495 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~  495 (892)
                      ++|++++|.++.++.  ..+++|++|++++|++++..+..+..+  +                                +
T Consensus       102 ~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l--~--------------------------------~  145 (317)
T 3o53_A          102 ETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCR--S--------------------------------R  145 (317)
T ss_dssp             CEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGG--S--------------------------------S
T ss_pred             CEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhcc--C--------------------------------C
Confidence            555555555554432  123445555555555544333333333  3                                5


Q ss_pred             ccEEECCCCccCccccccc-cCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          496 HKVLDMRMNNFNGKISQKF-VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      |++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|+++
T Consensus       146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR  222 (317)
T ss_dssp             EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred             CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECc
Confidence            5555555555555545544 3567777777777777743 3 23347778888888888876 44457777888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCc-CcCCcchhhhhhhhhcccC
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT-GVLPTGYLDNFKAMMHGNN  624 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~l~~l~~  624 (892)
                      +|++++ +|..+  ..+++|+.|++++|+++ +.+| .++..++.+..+++
T Consensus       223 ~N~l~~-l~~~~--~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l  269 (317)
T 3o53_A          223 NNKLVL-IEKAL--RFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAK  269 (317)
T ss_dssp             TSCCCE-ECTTC--CCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHH
T ss_pred             CCcccc-hhhHh--hcCCCCCEEEccCCCccCcCHH-HHHhccccceEEEC
Confidence            888763 55554  67778888888888887 3333 44555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=5.4e-26  Score=269.40  Aligned_cols=439  Identities=12%  Similarity=0.032  Sum_probs=214.3

Q ss_pred             CCccccceEecCCCCeEEEEECCCCCCCCCCCCCCCccCCCCCCeEecCCCCCCCC-C-CCC------------cCcCCC
Q 047519           50 DCCSWDGVTCDTVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYS-E-ISS------------GFSQLR  115 (892)
Q Consensus        50 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~-~p~------------~~~~l~  115 (892)
                      -|++|.++...    ....++++...  +..+. ..+..+++|++|+|+++..... . .|.            ....++
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~--~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCY--AVSPA-TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTT--SSCHH-HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHhhhh----hceEEeecccc--ccCHH-HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            46689998322    23345554322  11111 1356788999999998753211 0 111            124577


Q ss_pred             CCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcc--hhhhhhcccCCCCCCCEEecCCccCccccccc-----
Q 047519          116 SLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDC--FQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKE-----  188 (892)
Q Consensus       116 ~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~--~p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-----  188 (892)
                      +|++|+|++|.+++..+..+.. .+++|++|+++++...+.  ++..+.    ++++|++|+|++|.+.+..+..     
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAA----TCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHH----HCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHH----hCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            8888888888777655544421 356666666665421111  334444    5566666666665544433221     


Q ss_pred             CCCCCCcccEEEccCCCCcCccCCh-hHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCccccCCCCcceecc
Q 047519          189 NWLQEESFIYLLLHVDDMEIASKSK-DEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQ  267 (892)
Q Consensus       189 ~~l~~~~L~~L~Ls~n~~~l~~~~p-~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~~  267 (892)
                      ..+  ++|++|++++|  .  +.+. ..+.            .                                     
T Consensus       181 ~~~--~~L~~L~l~~~--~--~~~~~~~l~------------~-------------------------------------  205 (594)
T 2p1m_B          181 DTY--TSLVSLNISCL--A--SEVSFSALE------------R-------------------------------------  205 (594)
T ss_dssp             TTC--CCCCEEECTTC--C--SCCCHHHHH------------H-------------------------------------
T ss_pred             hcC--CcCcEEEeccc--C--CcCCHHHHH------------H-------------------------------------
Confidence            233  45555555554  3  1111 0000            1                                     


Q ss_pred             cceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCcc----ccccceeeccchhhhhhccCCCCCcCE
Q 047519          268 SVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEA----EYMAITKAVKEAIWLQVFVRGRRHYAE  343 (892)
Q Consensus       268 ~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~----~~n~l~~~~p~l~~l~l~~~~l~~L~~  343 (892)
                               .+..+++|++|++++|...+.+|..+..+++|+.|+++.+    ..+.+.+..+.+       .++++|+.
T Consensus       206 ---------l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l-------~~~~~L~~  269 (594)
T 2p1m_B          206 ---------LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL-------SGCKELRC  269 (594)
T ss_dssp             ---------HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH-------HTCTTCCE
T ss_pred             ---------HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH-------hcCCCccc
Confidence                     1123344444444444221123344444444444443300    022222211144       55666666


Q ss_pred             E-EccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEcc
Q 047519          344 P-HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLS  421 (892)
Q Consensus       344 L-~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~  421 (892)
                      | .+..... +.++..+..+++|++|++++|.+++......+..+++|++|++++|  ......+... .+++|++|++.
T Consensus       270 Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          270 LSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             EECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence            6 2322211 2334444456677777777776554333233456677777777766  1111122112 35667777663


Q ss_pred             ---------CCCCC--CcchhhhCCCCccEEEccCCCCCCCCchhhh-hhCCCcccEEEccC------CCCCCCCCCCCC
Q 047519          422 ---------ACNIS--EFPDILRTLHQLQWFNLSKNRIHGRISSWMW-DLGITALYYLDLSN------NFLTNIEYFPPT  483 (892)
Q Consensus       422 ---------~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~Ls~------n~l~~~~~~~~~  483 (892)
                               .+.++  .+......+++|++|+++.|.+++.....+. .+  ++|+.|+++.      +.++....    
T Consensus       347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~--~~L~~L~L~~~~~~~~~~l~~~~~----  420 (594)
T 2p1m_B          347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR--PNMTRFRLCIIEPKAPDYLTLEPL----  420 (594)
T ss_dssp             CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC--TTCCEEEEEESSTTCCCTTTCCCT----
T ss_pred             cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC--CCcceeEeecccCCCcccccCCch----
Confidence                     23444  2223334578888888888887755544444 34  7788888772      22221100    


Q ss_pred             CCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccC-CCCCcEEEccCCCCCCCcchhc
Q 047519          484 NMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN-CHHLEVLDVGNNQINDNFPNWL  562 (892)
Q Consensus       484 ~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~  562 (892)
                                             ...++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++..+..+
T Consensus       421 -----------------------~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l  476 (594)
T 2p1m_B          421 -----------------------DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV  476 (594)
T ss_dssp             -----------------------HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred             -----------------------hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence                                   001122234455566666654 444333333333 5566666666666654433333


Q ss_pred             -cCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          563 -EILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       563 -~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                       ..+++|++|++++|.+++...... ...+++|++|++++|+++
T Consensus       477 ~~~~~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFGDKALLAN-ASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHCTTCCEEEEESCSCCHHHHHHT-GGGGGGSSEEEEESSCCB
T ss_pred             HhcCCCcCEEECcCCCCcHHHHHHH-HHhCCCCCEEeeeCCCCC
Confidence             446666666666666532222111 134566677777776663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.1e-22  Score=212.72  Aligned_cols=206  Identities=21%  Similarity=0.256  Sum_probs=161.6

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      ..+.++++++.++. +|..+.  +++++|++++|++++..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            34566666666663 444433  467888888888876666677888888888888888877666666778888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|++++..+..+  ..+++|++|++++|++++..|.. +.                                        
T Consensus        94 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~----------------------------------------  130 (270)
T 2o6q_A           94 DNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRV-FD----------------------------------------  130 (270)
T ss_dssp             SSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTT-TT----------------------------------------
T ss_pred             CCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHH-hC----------------------------------------
Confidence            888876655554  67788888888888887554432 21                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                         .+++|+.|+|++|++++..+..+..+++|+.|+ +++|++++..+..|.++++|+.|+|++|++++..+..|..+++
T Consensus       131 ---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (270)
T 2o6q_A          131 ---SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR-LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK  206 (270)
T ss_dssp             ---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---cCcCCCEEECCCCcCCccCHhHccCCcccceeE-ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence               156788899999999876666788999999998 9999999877788999999999999999999777777999999


Q ss_pred             CCEEECCCCcCcccCC
Q 047519          735 LSVLNLSYNQFEGPIP  750 (892)
Q Consensus       735 L~~L~ls~N~l~g~iP  750 (892)
                      |+.|++++|++.+..+
T Consensus       207 L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          207 LKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCEEECCSSCBCCSSS
T ss_pred             CCEEEecCCCeeCCCc
Confidence            9999999999987765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=1.5e-22  Score=214.78  Aligned_cols=211  Identities=19%  Similarity=0.180  Sum_probs=146.4

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519          463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH  542 (892)
Q Consensus       463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  542 (892)
                      +|++|++++|.+++..+..+..+.        +|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~--------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFP--------ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCT--------TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CccEEECCCCcccccCHhHhcccc--------CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            344444444444444333333333        555555555555555555666777777777777777766667777778


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCC-CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhc
Q 047519          543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMH  621 (892)
Q Consensus       543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~  621 (892)
                      +|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+  ..+++|++|++++|++++..+.. +..+..   
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~---  174 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQ---  174 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHT---
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHH-hhhhhh---
Confidence            888888888887776665677788888888888887663 45555  77888888888888888654432 332221   


Q ss_pred             ccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhhe-eeecCCCcCCCCChhhhcCccccccccccCCCCCCCC
Q 047519          622 GNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD  700 (892)
Q Consensus       622 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~  700 (892)
                                                           ++.+. .|++++|++++..+..+. ..+|+.|+ +++|++++.
T Consensus       175 -------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~-L~~n~l~~~  215 (276)
T 2z62_A          175 -------------------------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELA-LDTNQLKSV  215 (276)
T ss_dssp             -------------------------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEE-CCSSCCSCC
T ss_pred             -------------------------------------ccccceeeecCCCcccccCccccC-CCcccEEE-CCCCceeec
Confidence                                                 12222 799999999955554444 45899998 999999987


Q ss_pred             cchhccCCCCCCeeeCCCCcCCCCCc
Q 047519          701 IPSLLRNLTEVESLDLSSNMLVGHIP  726 (892)
Q Consensus       701 ip~~l~~l~~L~~L~Ls~N~l~~~ip  726 (892)
                      .+..|+++++|+.|+|++|++++..|
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CHhHhcccccccEEEccCCcccccCC
Confidence            77778999999999999999997654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.8e-22  Score=211.23  Aligned_cols=201  Identities=22%  Similarity=0.242  Sum_probs=148.6

Q ss_pred             CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      ++++.++++++.++. +|..+.  +.++.|++++|.+++..+..+..+++|++|++++|++++. +. ...+++|++|++
T Consensus        10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L   84 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDL   84 (290)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEEC
T ss_pred             CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEEC
Confidence            377888888888773 444443  5788888888888877677788888888888888888763 32 267788888888


Q ss_pred             cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519          574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI  653 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (892)
                      ++|+++ .+|..+  ..+++|++|++++|++++..|.. +..                                      
T Consensus        85 s~N~l~-~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~-~~~--------------------------------------  122 (290)
T 1p9a_G           85 SHNQLQ-SLPLLG--QTLPALTVLDVSFNRLTSLPLGA-LRG--------------------------------------  122 (290)
T ss_dssp             CSSCCS-SCCCCT--TTCTTCCEEECCSSCCCCCCSST-TTT--------------------------------------
T ss_pred             CCCcCC-cCchhh--ccCCCCCEEECCCCcCcccCHHH-HcC--------------------------------------
Confidence            888876 455544  67788888888888887544432 221                                      


Q ss_pred             hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519          654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK  733 (892)
Q Consensus       654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  733 (892)
                           +++|+.|+|++|++++..+..|..+++|+.|+ |++|+|++..+..|.++++|+.|+|++|+++ .+|..+..++
T Consensus       123 -----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~  195 (290)
T 1p9a_G          123 -----LGELQELYLKGNELKTLPPGLLTPTPKLEKLS-LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (290)
T ss_dssp             -----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             -----CCCCCEEECCCCCCCccChhhcccccCCCEEE-CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence                 56677888888888866666777888888887 8888888666666777888888888888887 6777777777


Q ss_pred             CCCEEECCCCcCccc
Q 047519          734 YLSVLNLSYNQFEGP  748 (892)
Q Consensus       734 ~L~~L~ls~N~l~g~  748 (892)
                      .|+.+++++|++.+.
T Consensus       196 ~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          196 LLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCSEEECCSCCBCCS
T ss_pred             cCCeEEeCCCCccCc
Confidence            888888888888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=6e-22  Score=209.46  Aligned_cols=160  Identities=24%  Similarity=0.236  Sum_probs=67.5

Q ss_pred             hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccc
Q 047519          432 LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS  511 (892)
Q Consensus       432 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~  511 (892)
                      +..+++|++|++++|.+.+. + .+..+  ++|++|++++|.+++..+..+..+.        +|++|++++|++++..+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~-~-~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~--------~L~~L~L~~n~l~~~~~  126 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI-S-ALKEL--TNLTYLILTGNQLQSLPNGVFDKLT--------NLKELVLVENQLQSLPD  126 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC-G-GGTTC--TTCCEEECTTSCCCCCCTTTTTTCT--------TCCEEECTTSCCCCCCT
T ss_pred             cccCCCCcEEECCCCCCCCc-h-hhcCC--CCCCEEECCCCccCccChhHhcCCc--------CCCEEECCCCcCCccCH
Confidence            44445555555555554431 1 23333  4444444444444433333333222        33444444444443333


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCC
Q 047519          512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF  591 (892)
Q Consensus       512 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  591 (892)
                      ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+
T Consensus       127 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l  204 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRL  204 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTC
T ss_pred             HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH--hCC
Confidence            334444444444444444443333334444444444444444444333334444444444444444443333322  334


Q ss_pred             CCccEEEcCCCCCc
Q 047519          592 PRFRIIDLSHNEFT  605 (892)
Q Consensus       592 ~~L~~L~Ls~N~l~  605 (892)
                      ++|++|++++|.+.
T Consensus       205 ~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          205 TSLQYIWLHDNPWD  218 (272)
T ss_dssp             TTCCEEECCSSCBC
T ss_pred             cCCCEEEccCCCcc
Confidence            44444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=5.8e-22  Score=213.96  Aligned_cols=205  Identities=21%  Similarity=0.200  Sum_probs=117.4

Q ss_pred             ccEEECCCCccCccccccc--cCCCCCCEEEccCCCCCCCCC----ccccCCCCCcEEEccCCCCCCCcchhccCCCCCC
Q 047519          496 HKVLDMRMNNFNGKISQKF--VNSCNLTNLNLNGNRLEGPLP----LSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ  569 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  569 (892)
                      |++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..+..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4555555555555444444  445555555555555544333    2223444555555555555544444455555555


Q ss_pred             EEEccCCcCCCC--CCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEE
Q 047519          570 VLILRSNRFWGP--IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILT  647 (892)
Q Consensus       570 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  647 (892)
                      +|++++|++.+.  ++....+..+++|++|++++|+++. +|.                                     
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~-------------------------------------  214 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTG-------------------------------------  214 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHH-------------------------------------
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHH-------------------------------------
Confidence            555555544331  1111111344455555555555431 110                                     


Q ss_pred             EccchhhHHHhhhhheeeecCCCcCCCCChhhhcCc---cccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519          648 IKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL---NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH  724 (892)
Q Consensus       648 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  724 (892)
                         ........+++|+.|||++|++++.+|..++.+   ++|++|+ |++|+|+ .+|..+.  ++|+.|||++|++++.
T Consensus       215 ---~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~-Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          215 ---VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN-LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             ---HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE-CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             ---HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE-CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence               001112336778888888888887777777766   5888887 8888888 6677664  7888888888888853


Q ss_pred             CccccCCCCCCCEEECCCCcCcc
Q 047519          725 IPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       725 ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                       |. +..+++|+.|++++|+++.
T Consensus       288 -~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 -PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -ch-hhhCCCccEEECcCCCCCC
Confidence             33 6677888888888888863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.2e-22  Score=210.65  Aligned_cols=200  Identities=22%  Similarity=0.229  Sum_probs=151.0

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +|+.|++++|.+...  ..+..+++|++|++++|.+++ + ..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            444455555544421  235667778888888887775 3 367778888888888888887766677788888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|++++..+..+  ..+++|++|++++|++++..|.. +..                                       
T Consensus       118 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~-~~~---------------------------------------  155 (272)
T 3rfs_A          118 ENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGV-FDK---------------------------------------  155 (272)
T ss_dssp             TSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT---------------------------------------
T ss_pred             CCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHH-hcc---------------------------------------
Confidence            888876666555  67788888888888887544422 211                                       


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                          +++|+.|++++|++++..|..++.+++|+.|+ +++|++++..|..|+.+++|+.|+|++|.+.+..       +.
T Consensus       156 ----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~  223 (272)
T 3rfs_A          156 ----LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR-LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PG  223 (272)
T ss_dssp             ----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TT
T ss_pred             ----CccCCEEECCCCCcCccCHHHhcCCccCCEEE-CCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cH
Confidence                56788888888888877777788899999998 9999999888888899999999999999887654       46


Q ss_pred             CCEEECCCCcCcccCCCC
Q 047519          735 LSVLNLSYNQFEGPIPQG  752 (892)
Q Consensus       735 L~~L~ls~N~l~g~iP~~  752 (892)
                      |+.|+++.|+++|.+|..
T Consensus       224 l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             THHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHHhCCCcccCc
Confidence            888899999999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.7e-21  Score=203.14  Aligned_cols=205  Identities=23%  Similarity=0.212  Sum_probs=161.9

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519          463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH  542 (892)
Q Consensus       463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  542 (892)
                      ..+.++++++.++.++. .++          +.++.|++++|++++..+..|..+++|++|++++|.++...+..|..++
T Consensus        17 ~~~~l~~~~~~l~~ip~-~~~----------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~   85 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-NIP----------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK   85 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-CCC----------TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT
T ss_pred             CCCEEEccCCCCCccCC-CCC----------CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC
Confidence            45566666666665432 222          1567777777777766666788888889999988888866666678888


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519          543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG  622 (892)
Q Consensus       543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l  622 (892)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..+  ..+++|++|++++|++++..+ ..+..       
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~~~-------  155 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPK-GVFDK-------  155 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT-------
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCH-hHccC-------
Confidence            99999999999888777778888999999999999887776665  788899999999999885433 32221       


Q ss_pred             cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc
Q 047519          623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP  702 (892)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip  702 (892)
                                                          +++|+.|++++|++++..+..|..+++|+.|+ +++|++++..+
T Consensus       156 ------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~  198 (270)
T 2o6q_A          156 ------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLK-LDNNQLKRVPE  198 (270)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSSCCSCCCT
T ss_pred             ------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEE-CCCCcCCcCCH
Confidence                                                67788999999999977777899999999998 99999998777


Q ss_pred             hhccCCCCCCeeeCCCCcCCCCC
Q 047519          703 SLLRNLTEVESLDLSSNMLVGHI  725 (892)
Q Consensus       703 ~~l~~l~~L~~L~Ls~N~l~~~i  725 (892)
                      ..|..+++|+.|+|++|.+....
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          199 GAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCSS
T ss_pred             HHhccccCCCEEEecCCCeeCCC
Confidence            78999999999999999987654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.4e-21  Score=208.25  Aligned_cols=205  Identities=24%  Similarity=0.255  Sum_probs=126.8

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCC
Q 047519          514 FVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPR  593 (892)
Q Consensus       514 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  593 (892)
                      +..+++++++++++|.++ .+|..+.  +++++|++++|++++..|..|..+++|++|++++|.+++..+.    ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence            345566677777777766 4454432  5667777777777666666666677777777777766543322    45666


Q ss_pred             ccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC
Q 047519          594 FRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ  673 (892)
Q Consensus       594 L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  673 (892)
                      |++|++++|+++ .+|..+ .                                           .++.|+.|++++|+++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~-~-------------------------------------------~l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLG-Q-------------------------------------------TLPALTVLDVSFNRLT  113 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCT-T-------------------------------------------TCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCC-cCchhh-c-------------------------------------------cCCCCCEEECCCCcCc
Confidence            777777777665 344321 1                                           1455666777777777


Q ss_pred             CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCC-
Q 047519          674 GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQG-  752 (892)
Q Consensus       674 ~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-  752 (892)
                      +..|..|.++++|+.|+ |++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+++ .+|.+ 
T Consensus       114 ~l~~~~~~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          114 SLPLGALRGLGELQELY-LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             CCCSSTTTTCTTCCEEE-CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ccCHHHHcCCCCCCEEE-CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence            55556666777777776 7777777666666666777777777777776555555666777777777777776 44543 


Q ss_pred             CCCCcccCCccCCCCCCCCC
Q 047519          753 SQFNTFRNDSYVGNSGLCGF  772 (892)
Q Consensus       753 ~~~~~~~~~~~~gN~~lc~~  772 (892)
                      .....+....+.|||+.|++
T Consensus       192 ~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTCCCSEEECCSCCBCCSG
T ss_pred             cccccCCeEEeCCCCccCcC
Confidence            22333445555666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.2e-21  Score=204.47  Aligned_cols=212  Identities=20%  Similarity=0.218  Sum_probs=156.3

Q ss_pred             CCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEE
Q 047519          519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID  598 (892)
Q Consensus       519 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  598 (892)
                      ..++++++++.++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..+..+  ..+++|++|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEE
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEE
Confidence            4567777777777 5555543  577888888888887777777788888888888888877666655  6778888888


Q ss_pred             cCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChh
Q 047519          599 LSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPE  678 (892)
Q Consensus       599 Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~  678 (892)
                      +++|++++..+.. +..                                           +++|+.|+|++|++++..+.
T Consensus        90 L~~n~l~~~~~~~-~~~-------------------------------------------l~~L~~L~L~~N~l~~~~~~  125 (251)
T 3m19_A           90 LANNQLASLPLGV-FDH-------------------------------------------LTQLDKLYLGGNQLKSLPSG  125 (251)
T ss_dssp             CTTSCCCCCCTTT-TTT-------------------------------------------CTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCcccccChhH-hcc-------------------------------------------cCCCCEEEcCCCcCCCcChh
Confidence            8888887544322 221                                           56788899999999877777


Q ss_pred             hhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCCCCcc
Q 047519          679 VVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTF  758 (892)
Q Consensus       679 ~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~  758 (892)
                      .+..+++|+.|+ |++|+|++..|..|+++++|+.|+|++|++++..|..|..+++|+.|++++|++++..+....+..+
T Consensus       126 ~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~  204 (251)
T 3m19_A          126 VFDRLTKLKELR-LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQW  204 (251)
T ss_dssp             TTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred             HhccCCcccEEE-CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence            788999999998 9999999877778999999999999999999888888999999999999999999875432222111


Q ss_pred             ------cCCccCCCCCCCCCCCCCCCCCC
Q 047519          759 ------RNDSYVGNSGLCGFPLLESCNID  781 (892)
Q Consensus       759 ------~~~~~~gN~~lc~~~~~~~c~~~  781 (892)
                            ......|+ .+|+.|....|..+
T Consensus       205 ~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          205 IRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             HHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             HHhcccceeeccCc-ccccCCCcCccCCC
Confidence                  11122343 36777777778765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.7e-23  Score=233.68  Aligned_cols=253  Identities=19%  Similarity=0.234  Sum_probs=154.9

Q ss_pred             CcchhhhCCCCccEEEccCCCCCCCCchh----hhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECC
Q 047519          427 EFPDILRTLHQLQWFNLSKNRIHGRISSW----MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMR  502 (892)
Q Consensus       427 ~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~  502 (892)
                      .++..+..+++|++|++++|.+.+..+..    +..+  ++|++|++++|.+.                           
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~~~~~---------------------------   73 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK--KDLEIAEFSDIFTG---------------------------   73 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC--TTCCEEECCSCCTT---------------------------
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC--CCccEEeCcccccC---------------------------
Confidence            56667777788888888888777554433    2233  56666666654332                           


Q ss_pred             CCccCcccccc-------ccCCCCCCEEEccCCCCCC----CCCccccCCCCCcEEEccCCCCCCCcchhcc----CC--
Q 047519          503 MNNFNGKISQK-------FVNSCNLTNLNLNGNRLEG----PLPLSLVNCHHLEVLDVGNNQINDNFPNWLE----IL--  565 (892)
Q Consensus       503 ~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----~l--  565 (892)
                        ++.+.+|..       +..+++|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+.    .+  
T Consensus        74 --~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~  151 (386)
T 2ca6_A           74 --RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV  151 (386)
T ss_dssp             --SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             --ccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhh
Confidence              122222322       3556666677777766665    2555666666777777777766543332222    22  


Q ss_pred             -------CCCCEEEccCCcCC-CCCCCC-CCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCC
Q 047519          566 -------PELQVLILRSNRFW-GPIGDN-TTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN  636 (892)
Q Consensus       566 -------~~L~~L~L~~N~l~-~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~  636 (892)
                             ++|++|++++|+++ +.++.. ..+..+++|++|++++|+++..   +    ...+.                
T Consensus       152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g----~~~l~----------------  208 (386)
T 2ca6_A          152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---G----IEHLL----------------  208 (386)
T ss_dssp             HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---H----HHHHH----------------
T ss_pred             hhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---H----HHHHH----------------
Confidence                   67777777777664 222210 0113556777777777766511   0    00000                


Q ss_pred             CCCccceEEEEEccchhhHHHhhhhheeeecCCCcCC----CCChhhhcCccccccccccCCCCCCCC----cchhccC-
Q 047519          637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQ----GGIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRN-  707 (892)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~~p~~~~~l~~L~~L~~Ls~N~l~~~----ip~~l~~-  707 (892)
                                      ......+++|+.|+|++|.++    +.+|..+..+++|+.|+ |++|++++.    +|..+.. 
T Consensus       209 ----------------~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~-L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          209 ----------------LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG-LNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             ----------------HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE-CTTCCCCHHHHHHHHHHHHTC
T ss_pred             ----------------HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE-CCCCCCchhhHHHHHHHHhhc
Confidence                            000112566777888888775    56777778888888887 888888765    5666633 


Q ss_pred             -CCCCCeeeCCCCcCCC----CCcccc-CCCCCCCEEECCCCcCcccCC
Q 047519          708 -LTEVESLDLSSNMLVG----HIPTQL-TSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       708 -l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~iP  750 (892)
                       +++|+.|+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence             7888888888888886    477776 557888888888888887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=2.1e-22  Score=222.50  Aligned_cols=156  Identities=19%  Similarity=0.165  Sum_probs=67.5

Q ss_pred             EccCCCCC-CcchhhhCCCCccEEEccCCCCCCCCc----hhhhhhCCC-cccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519          419 GLSACNIS-EFPDILRTLHQLQWFNLSKNRIHGRIS----SWMWDLGIT-ALYYLDLSNNFLTNIEYFPPTNMTQLNFDS  492 (892)
Q Consensus       419 ~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~  492 (892)
                      .++.|.++ .+|..+...++|++|++++|.+++..+    ..+..+  + +|++|++++|.+++..+..+..+    +..
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~l~~~~~~~l~~~----l~~   77 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT--PASVTSLNLSGNSLGFKNSDELVQI----LAA   77 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC--CTTCCEEECCSSCGGGSCHHHHHHH----HHT
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC--CCceeEEECcCCCCCHHHHHHHHHH----Hhc
Confidence            44444444 333333333345555555555554443    333333  3 45555555554443322111110    000


Q ss_pred             -CCcccEEECCCCccCcccccccc----CC-CCCCEEEccCCCCCCCCCccc----cC-CCCCcEEEccCCCCCCCcc--
Q 047519          493 -NLTHKVLDMRMNNFNGKISQKFV----NS-CNLTNLNLNGNRLEGPLPLSL----VN-CHHLEVLDVGNNQINDNFP--  559 (892)
Q Consensus       493 -~~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~L~~N~l~~~~p--  559 (892)
                       +++|++|++++|.+++..+..+.    .+ ++|++|++++|.+++..+..+    .. .++|++|+|++|++++..+  
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence             01445555555555444333222    22 455556666555554433322    22 2455555555555553222  


Q ss_pred             --hhccCCC-CCCEEEccCCcCCC
Q 047519          560 --NWLEILP-ELQVLILRSNRFWG  580 (892)
Q Consensus       560 --~~~~~l~-~L~~L~L~~N~l~~  580 (892)
                        ..+..++ +|++|+|++|++++
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHhcCCccccEeeecCCCCch
Confidence              2223333 55555555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.1e-22  Score=224.82  Aligned_cols=260  Identities=18%  Similarity=0.192  Sum_probs=197.2

Q ss_pred             EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCC----CCCCCCCeeecCCCC-cccEEECCCCccCccccccc
Q 047519          440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNL-THKVLDMRMNNFNGKISQKF  514 (892)
Q Consensus       440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~l~~~~-~L~~L~L~~n~l~~~~~~~~  514 (892)
                      +++++.|.+++.+|..+...  ++|++|++++|.+++..+    ..+.        .++ +|++|++++|.+++..+..+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~--------~~~~~L~~L~Ls~N~l~~~~~~~l   71 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIP--HGVTSLDLSLNNLYSISTVELIQAFA--------NTPASVTSLNLSGNSLGFKNSDEL   71 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHH--------TCCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ccccccccchHHHHHHHhCC--CCceEEEccCCCCChHHHHHHHHHHH--------hCCCceeEEECcCCCCCHHHHHHH
Confidence            57899999999888877665  679999999999987754    2222        223 68999999999998877777


Q ss_pred             cCC-----CCCCEEEccCCCCCCCCCcc----ccCC-CCCcEEEccCCCCCCCcchhc----cC-CCCCCEEEccCCcCC
Q 047519          515 VNS-----CNLTNLNLNGNRLEGPLPLS----LVNC-HHLEVLDVGNNQINDNFPNWL----EI-LPELQVLILRSNRFW  579 (892)
Q Consensus       515 ~~l-----~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~L~~N~l~~~~p~~~----~~-l~~L~~L~L~~N~l~  579 (892)
                      ..+     ++|++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+    .. .++|++|++++|.++
T Consensus        72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            664     89999999999999776664    4444 899999999999988766554    34 369999999999987


Q ss_pred             CCCCCCC--CCcCCC-CccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHH
Q 047519          580 GPIGDNT--TIVPFP-RFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE  656 (892)
Q Consensus       580 ~~~~~~~--~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (892)
                      +..+..+  .+..++ +|++|+|++|++++..+..+...+                                        
T Consensus       152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------  191 (362)
T 3goz_A          152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------  191 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------
T ss_pred             HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------
Confidence            4332211  012344 899999999999866554321111                                        


Q ss_pred             Hhh-hhheeeecCCCcCCCC----ChhhhcC-ccccccccccCCCCCCCCcc----hhccCCCCCCeeeCCCCcCCCCCc
Q 047519          657 RIL-TIFMTIDLSSNKFQGG----IPEVVGK-LNLLKGLNNISHNNLTGDIP----SLLRNLTEVESLDLSSNMLVGHIP  726 (892)
Q Consensus       657 ~~l-~~L~~LdLs~N~l~~~----~p~~~~~-l~~L~~L~~Ls~N~l~~~ip----~~l~~l~~L~~L~Ls~N~l~~~ip  726 (892)
                      ... ++|+.|||++|.+++.    ++..+.. .++|++|+ |++|++++..+    ..+..+++|+.|+|++|.+.+..+
T Consensus       192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~-Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~  270 (362)
T 3goz_A          192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN-LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK  270 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE-CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred             HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE-CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence            113 5899999999999864    5556655 45999998 99999997655    345778999999999999665443


Q ss_pred             -------cccCCCCCCCEEECCCCcCcccCC
Q 047519          727 -------TQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       727 -------~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                             ..+..+++|+.||+++|++.+..|
T Consensus       271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          271 EQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence                   367888999999999999986643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.2e-21  Score=209.34  Aligned_cols=207  Identities=20%  Similarity=0.168  Sum_probs=144.3

Q ss_pred             CcccEEEccCCCCCCCCCCCC--CCCCeeecCCCCcccEEECCCCccCcccc----ccccCCCCCCEEEccCCCCCCCCC
Q 047519          462 TALYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNGKIS----QKFVNSCNLTNLNLNGNRLEGPLP  535 (892)
Q Consensus       462 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~l~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p  535 (892)
                      ++|++|++++|.+++..|..+  ..+.        +|++|++++|.+++..+    ..+..+++|++|++++|++++..|
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~--------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  162 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGL--------ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC  162 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCB--------CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCC--------CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence            456666666666655555443  3333        66666666666665433    334567788888888888887777


Q ss_pred             ccccCCCCCcEEEccCCCCCCC--c--chhccCCCCCCEEEccCCcCCCCCCCCC-CCcCCCCccEEEcCCCCCcCcCCc
Q 047519          536 LSLVNCHHLEVLDVGNNQINDN--F--PNWLEILPELQVLILRSNRFWGPIGDNT-TIVPFPRFRIIDLSHNEFTGVLPT  610 (892)
Q Consensus       536 ~~l~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~  610 (892)
                      ..+..+++|++|+|++|++.+.  +  +..+..+++|++|++++|+++...+... .+..+++|++|||++|++++..|.
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            8888888888888888887652  1  2233578888888888888853211100 014568888889999988877675


Q ss_pred             chhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccccccc
Q 047519          611 GYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  690 (892)
Q Consensus       611 ~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~  690 (892)
                      .+.. +.                                        .+++|+.|+|++|+|+ .+|..+.  ++|+.|+
T Consensus       243 ~~~~-~~----------------------------------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~  278 (310)
T 4glp_A          243 SAPR-CM----------------------------------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD  278 (310)
T ss_dssp             CCSS-CC----------------------------------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred             hHHh-cc----------------------------------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence            4311 00                                        0367889999999998 6777765  7899998


Q ss_pred             ccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519          691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG  723 (892)
Q Consensus       691 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  723 (892)
                       |++|+|++. |. +..+++|+.|+|++|+++.
T Consensus       279 -Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          279 -LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             -CCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             -CCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence             999999964 44 6788999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=1.3e-20  Score=195.07  Aligned_cols=196  Identities=18%  Similarity=0.189  Sum_probs=137.1

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCCCCCcEEEccC-CCCCCCcchhccCCCCCCEEE
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNCHHLEVLDVGN-NQINDNFPNWLEILPELQVLI  572 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  572 (892)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            55666666666666555667777778888888776 7655555777778888888887 777776666777778888888


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCcc---EEEcCCC-CCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFR---IIDLSHN-EFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI  648 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (892)
                      +++|++++ +|. +  ..+++|+   +|++++| ++++..+ ..+.+                                 
T Consensus       112 l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~---------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMTSIPV-NAFQG---------------------------------  153 (239)
T ss_dssp             EEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCCEECT-TTTTT---------------------------------
T ss_pred             CCCCCCcc-ccc-c--ccccccccccEEECCCCcchhhcCc-ccccc---------------------------------
Confidence            88887765 444 3  5666666   8888888 7764333 22221                                 


Q ss_pred             ccchhhHHHhhhhhe-eeecCCCcCCCCChhhhcCccccccccccCCCC-CCCCcchhccCC-CCCCeeeCCCCcCCCCC
Q 047519          649 KGIDIQIERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN-LTGDIPSLLRNL-TEVESLDLSSNMLVGHI  725 (892)
Q Consensus       649 ~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~i  725 (892)
                                ++.|+ .|++++|+++ .+|......++|+.|+ +++|+ +++..+..|.++ ++|+.||+++|++++ +
T Consensus       154 ----------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~-L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l  220 (239)
T 2xwt_C          154 ----------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY-LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L  220 (239)
T ss_dssp             ----------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE-CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred             ----------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE-cCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence                      56677 8888888887 5555443337888887 88884 886666778888 888888888888874 4


Q ss_pred             ccccCCCCCCCEEECCCC
Q 047519          726 PTQLTSLKYLSVLNLSYN  743 (892)
Q Consensus       726 p~~l~~l~~L~~L~ls~N  743 (892)
                      |..  .+++|+.|+++++
T Consensus       221 ~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          221 PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCT--TCTTCSEEECTTC
T ss_pred             Chh--HhccCceeeccCc
Confidence            443  5667888888766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=7.6e-22  Score=215.84  Aligned_cols=253  Identities=17%  Similarity=0.177  Sum_probs=189.7

Q ss_pred             CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc-cccccc
Q 047519          437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-ISQKFV  515 (892)
Q Consensus       437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-~~~~~~  515 (892)
                      .++.++++++.+.   +..+..+..++++.|++++|.+.+..+.. ..+        ++|++|++++|.+++. ++..+.
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~--------~~L~~L~L~~~~l~~~~~~~~~~  115 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSP--------FRVQHMDLSNSVIEVSTLHGILS  115 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCC--------BCCCEEECTTCEECHHHHHHHHT
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccC--------CCCCEEEccCCCcCHHHHHHHHh
Confidence            4778888888775   33333322267888888888887765542 233        3889999999988866 777888


Q ss_pred             CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCC-CCCCC-cchhccCCCCCCEEEccCC-cCCCC-CCCCCCCcCC
Q 047519          516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNN-QINDN-FPNWLEILPELQVLILRSN-RFWGP-IGDNTTIVPF  591 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l  591 (892)
                      .+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+  ..+
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~l  193 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV--AHV  193 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH--HHS
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH--Hhc
Confidence            8999999999999998888888889999999999999 67753 6677888999999999999 87643 33333  667


Q ss_pred             C-CccEEEcCCCC--Cc-CcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeec
Q 047519          592 P-RFRIIDLSHNE--FT-GVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDL  667 (892)
Q Consensus       592 ~-~L~~L~Ls~N~--l~-~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  667 (892)
                      + +|++|++++|.  ++ +.+|.                                            ....+++|+.|++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~--------------------------------------------~~~~~~~L~~L~l  229 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLST--------------------------------------------LVRRCPNLVHLDL  229 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHH--------------------------------------------HHHHCTTCSEEEC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHH--------------------------------------------HHhhCCCCCEEeC
Confidence            8 99999999994  44 12221                                            1123678999999


Q ss_pred             CCCc-CCCCChhhhcCccccccccccCCCC-CCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC-CCCCEEECCCCc
Q 047519          668 SSNK-FQGGIPEVVGKLNLLKGLNNISHNN-LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQ  744 (892)
Q Consensus       668 s~N~-l~~~~p~~~~~l~~L~~L~~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l-~~L~~L~ls~N~  744 (892)
                      ++|. +++..+..+..+++|+.|+ +++|. ++......++++++|+.|++++| ++..   .+..+ ..|..|++++|+
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLS-LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEE-CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEee-CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence            9999 7778888999999999998 99995 33222236888999999999999 4432   23333 246777799999


Q ss_pred             CcccCCCC
Q 047519          745 FEGPIPQG  752 (892)
Q Consensus       745 l~g~iP~~  752 (892)
                      ++|..|..
T Consensus       305 l~~~~~~~  312 (336)
T 2ast_B          305 FTTIARPT  312 (336)
T ss_dssp             SCCTTCSS
T ss_pred             CccccCCc
Confidence            99988863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.4e-19  Score=188.79  Aligned_cols=182  Identities=18%  Similarity=0.165  Sum_probs=158.5

Q ss_pred             CCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519          413 PNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS  492 (892)
Q Consensus       413 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~  492 (892)
                      .+.++++++++.++.+|..+.  ++++.|++++|.+.+..+..+..+  ++|++|++++|.+++..+..+..+.      
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~------   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGL--TKLTWLNLDYNQLQTLSAGVFDDLT------   83 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTC--TTCCEEECTTSCCCCCCTTTTTTCT------
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCc--ccCCEEECCCCcCCccCHhHhccCC------
Confidence            356778888888888887554  689999999999988888778877  8999999999999988877777776      


Q ss_pred             CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEE
Q 047519          493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI  572 (892)
Q Consensus       493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  572 (892)
                        +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        84 --~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  161 (251)
T 3m19_A           84 --ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS  161 (251)
T ss_dssp             --TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             --cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence              889999999999988888889999999999999999977777789999999999999999997777899999999999


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL  608 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (892)
                      |++|++++..+..+  ..+++|+.|++++|++++..
T Consensus       162 L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          162 LSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCTTS
T ss_pred             CCCCcCCccCHHHH--hCCCCCCEEEeeCCceeCCc
Confidence            99999988777666  78999999999999998653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=7.2e-20  Score=197.01  Aligned_cols=190  Identities=18%  Similarity=0.262  Sum_probs=136.4

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +|+.|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|++++. + .+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence            44555555555543 22 356677777777777777743 33 77777788888888777763 3 57777788888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|++++..+    +..+++|++|++++|++++..+   +.                                        
T Consensus       116 ~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l~----------------------------------------  148 (308)
T 1h6u_A          116 STQITDVTP----LAGLSNLQVLYLDLNQITNISP---LA----------------------------------------  148 (308)
T ss_dssp             TSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---GG----------------------------------------
T ss_pred             CCCCCCchh----hcCCCCCCEEECCCCccCcCcc---cc----------------------------------------
Confidence            887765422    3677888888888888774432   11                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                         .+++|+.|++++|++++ ++. +..+++|+.|+ +++|++++..+  +..+++|+.|+|++|++++..|  +..+++
T Consensus       149 ---~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~-l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  218 (308)
T 1h6u_A          149 ---GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLK-ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN  218 (308)
T ss_dssp             ---GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE-CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred             ---CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEE-CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence               15678888888888885 443 88888888888 99998885544  7888899999999999885543  788889


Q ss_pred             CCEEECCCCcCcc
Q 047519          735 LSVLNLSYNQFEG  747 (892)
Q Consensus       735 L~~L~ls~N~l~g  747 (892)
                      |+.|++++|++++
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            9999999998875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=5.9e-21  Score=208.76  Aligned_cols=252  Identities=19%  Similarity=0.138  Sum_probs=153.1

Q ss_pred             CCcEEEccCCCCCcCCCccccCC--CCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcC-CCccc
Q 047519          283 KRRSITGYVFNFAGGPINWKSTL--QSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGS-IPSSV  359 (892)
Q Consensus       283 ~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~-~p~~l  359 (892)
                      .++.++++++.+.   +..+..+  ++++.|+++   +|.+.+..+.+       ..+++|++|++++|.+++. +|..+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~---~n~l~~~~~~~-------~~~~~L~~L~L~~~~l~~~~~~~~~  114 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCP---RSFMDQPLAEH-------FSPFRVQHMDLSNSVIEVSTLHGIL  114 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECT---TCEECSCCCSC-------CCCBCCCEEECTTCEECHHHHHHHH
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcC---Cccccccchhh-------ccCCCCCEEEccCCCcCHHHHHHHH
Confidence            3677888877665   3445555  677777777   77776666655       6677777777777777654 66667


Q ss_pred             cCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC-CCCCCccccCCC-CCCCccEEEccCC-CCC--CcchhhhC
Q 047519          360 YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN-RLSLSTKLKVNS-SFPNLFGLGLSAC-NIS--EFPDILRT  434 (892)
Q Consensus       360 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-~l~~L~~L~L~~n-~l~--~lp~~l~~  434 (892)
                      ..+++|++|++++|.+++..+ ..+..+++|++|++++| .+... .++... .+++|++|++++| .++  .++..+..
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  192 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  192 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             hhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence            777777777777777765555 56666777777777776 22100 122212 4555555555555 555  24445555


Q ss_pred             CC-CccEEEccCC--CCC-CCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCc-cCcc
Q 047519          435 LH-QLQWFNLSKN--RIH-GRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGK  509 (892)
Q Consensus       435 l~-~L~~L~Ls~n--~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~-l~~~  509 (892)
                      ++ +|++|++++|  .++ +.++..+..+  +                                +|+.|++++|. +++.
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~--~--------------------------------~L~~L~l~~~~~l~~~  238 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRC--P--------------------------------NLVHLDLSDSVMLKND  238 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHC--T--------------------------------TCSEEECTTCTTCCGG
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhC--C--------------------------------CCCEEeCCCCCcCCHH
Confidence            55 5555555555  233 2233333333  4                                45555555555 4445


Q ss_pred             ccccccCCCCCCEEEccCCC-CCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCC
Q 047519          510 ISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT  586 (892)
Q Consensus       510 ~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  586 (892)
                      .+..+..+++|++|++++|. +.......+..+++|++|++++| ++......+.  .+++.|++++|++++..|...
T Consensus       239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred             HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence            55667777888888888885 22221225677888888888888 5443222222  235556678888888877765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.81  E-value=2.2e-19  Score=185.93  Aligned_cols=78  Identities=23%  Similarity=0.244  Sum_probs=41.5

Q ss_pred             ccc-EEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCC-CCCcEEEccCCCCCCCcchhccCCCCCCEE
Q 047519          495 THK-VLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNC-HHLEVLDVGNNQINDNFPNWLEILPELQVL  571 (892)
Q Consensus       495 ~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  571 (892)
                      +|+ .|++++|.++...+..|.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++++. |..  .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCcee
Confidence            444 4455444444222222222 556666666663 654445556666 6666666666666653 322  45566666


Q ss_pred             EccCC
Q 047519          572 ILRSN  576 (892)
Q Consensus       572 ~L~~N  576 (892)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            66654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.9e-19  Score=207.84  Aligned_cols=186  Identities=24%  Similarity=0.304  Sum_probs=101.3

Q ss_pred             cccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCC
Q 047519          463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCH  542 (892)
Q Consensus       463 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  542 (892)
                      +++.|++++|.++++++..+   .        +|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~--------~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---P--------QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---T--------TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred             CccEEEeCCCCCCccCHhHc---C--------CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence            67777777777776332221   1        5566666666666 344   234566666666666664 444 433  


Q ss_pred             CCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcc
Q 047519          543 HLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHG  622 (892)
Q Consensus       543 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l  622 (892)
                      +|++|++++|++++ +|.   .+++|+.|++++|++++ +|.     .+++|++|+|++|++++ +|. +          
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l----------  178 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L----------  178 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C----------
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h----------
Confidence            66666666666665 443   45566666666666654 332     24556666666666654 442 1          


Q ss_pred             cCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccc-------ccccccCCC
Q 047519          623 NNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLL-------KGLNNISHN  695 (892)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L-------~~L~~Ls~N  695 (892)
                                                          .++|+.|+|++|+|+ .+|. +..  +|       +.|+ |++|
T Consensus       179 ------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~-Ls~N  217 (571)
T 3cvr_A          179 ------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFR-CREN  217 (571)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEE-CCSS
T ss_pred             ------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEe-cCCC
Confidence                                                123555666666655 4444 333  44       5555 5555


Q ss_pred             CCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519          696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS  731 (892)
Q Consensus       696 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  731 (892)
                      +|+ .+|..+.++++|+.|+|++|++++.+|..+..
T Consensus       218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            555 34555555555555555555555555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=5.1e-21  Score=213.50  Aligned_cols=96  Identities=18%  Similarity=0.190  Sum_probs=48.7

Q ss_pred             cccCCCCCCEEEccCCCCC----CCCCccccCCCCCcEEEccCCCCCCC----cchhcc--CCCCCCEEEccCCcCCC--
Q 047519          513 KFVNSCNLTNLNLNGNRLE----GPLPLSLVNCHHLEVLDVGNNQINDN----FPNWLE--ILPELQVLILRSNRFWG--  580 (892)
Q Consensus       513 ~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~--  580 (892)
                      .+..+++|++|+|++|.++    +.+|..+..+++|++|+|++|++++.    +|..+.  .+++|++|+|++|.+++  
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g  290 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA  290 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence            3444445555555555553    23444555555555555555555543    334442  25556666666665544  


Q ss_pred             --CCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519          581 --PIGDNTTIVPFPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       581 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (892)
                        .+|..+ ..++++|++|++++|++++..|
T Consensus       291 ~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          291 VRTLKTVI-DEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHH-HHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHH-HhcCCCceEEEccCCcCCcchh
Confidence              233221 0234666666666666665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2e-19  Score=197.39  Aligned_cols=239  Identities=18%  Similarity=0.115  Sum_probs=124.8

Q ss_pred             cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519          416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT  495 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~  495 (892)
                      ++++.++++++++|..+  .+++++|+|++|+|+...+..|..+  ++|++|+|++|++.                    
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l--~~L~~L~Ls~N~i~--------------------   67 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF--GDLEKIEISQNDVL--------------------   67 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTC--TTCCEEEEECCTTC--------------------
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCC--CCCCEEECcCCCCC--------------------
Confidence            34555555666665433  2345555555555553333334444  45555555554443                    


Q ss_pred             ccEEECCCCccCcccc-ccccCCCCCCE-EEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          496 HKVLDMRMNNFNGKIS-QKFVNSCNLTN-LNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                                  +.+| ..|.+++++++ +.+++|+++...|..|..+++|++|++++|++....+..+....++..|++
T Consensus        68 ------------~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           68 ------------EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             ------------CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             ------------CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence                        3332 23445555443 344456666555556666666666666666666544444445555666666


Q ss_pred             cCC-cCCCCCCCCCCCcCC-CCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccc
Q 047519          574 RSN-RFWGPIGDNTTIVPF-PRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGI  651 (892)
Q Consensus       574 ~~N-~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  651 (892)
                      .++ ++....+..+  ..+ ..+++|++++|+|+. +|...+.                                     
T Consensus       136 ~~~~~i~~l~~~~f--~~~~~~l~~L~L~~N~i~~-i~~~~f~-------------------------------------  175 (350)
T 4ay9_X          136 QDNINIHTIERNSF--VGLSFESVILWLNKNGIQE-IHNSAFN-------------------------------------  175 (350)
T ss_dssp             ESCTTCCEECTTSS--TTSBSSCEEEECCSSCCCE-ECTTSST-------------------------------------
T ss_pred             ccccccccccccch--hhcchhhhhhccccccccC-CChhhcc-------------------------------------
Confidence            543 3322222222  222 346667777777763 3322211                                     


Q ss_pred             hhhHHHhhhhheeeecCC-CcCCCCCh-hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCcccc
Q 047519          652 DIQIERILTIFMTIDLSS-NKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQL  729 (892)
Q Consensus       652 ~~~~~~~l~~L~~LdLs~-N~l~~~~p-~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  729 (892)
                             ...++.|++++ |.++ .+| ..|.++++|+.|+ +++|+|+...+..|.   +|+.|.+.++.--..+| .+
T Consensus       176 -------~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~Ld-Ls~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          176 -------GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILD-ISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             -------TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEE-CTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CT
T ss_pred             -------ccchhHHhhccCCccc-CCCHHHhccCcccchhh-cCCCCcCccChhhhc---cchHhhhccCCCcCcCC-Cc
Confidence                   33466677764 4444 444 4567777777776 777777744333333   34444433333333555 36


Q ss_pred             CCCCCCCEEECCCC
Q 047519          730 TSLKYLSVLNLSYN  743 (892)
Q Consensus       730 ~~l~~L~~L~ls~N  743 (892)
                      ..+++|+.++++++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            67777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=4.1e-19  Score=191.13  Aligned_cols=194  Identities=22%  Similarity=0.302  Sum_probs=112.4

Q ss_pred             cCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCcc
Q 047519          360 YELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQ  439 (892)
Q Consensus       360 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~  439 (892)
                      ..+++|++|++++|.++. ++  .+..+++|++|++++|                         .++.++. +..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~--~~~~l~~L~~L~L~~n-------------------------~i~~~~~-~~~l~~L~   88 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDN-------------------------QITDLAP-LKNLTKIT   88 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSS-------------------------CCCCCGG-GTTCCSCC
T ss_pred             HHcCCcCEEEeeCCCccC-ch--hhhccCCCCEEEccCC-------------------------cCCCChh-HccCCCCC
Confidence            345566666666666552 22  3455555555555555                         4444433 44455555


Q ss_pred             EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519          440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN  519 (892)
Q Consensus       440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  519 (892)
                      +|++++|.+.+. + .+..+  ++|++|++++|.+++..+  +..+        ++|++|++++|.+++..+  +..+++
T Consensus        89 ~L~L~~n~l~~~-~-~~~~l--~~L~~L~l~~n~l~~~~~--l~~l--------~~L~~L~l~~n~l~~~~~--l~~l~~  152 (308)
T 1h6u_A           89 ELELSGNPLKNV-S-AIAGL--QSIKTLDLTSTQITDVTP--LAGL--------SNLQVLYLDLNQITNISP--LAGLTN  152 (308)
T ss_dssp             EEECCSCCCSCC-G-GGTTC--TTCCEEECTTSCCCCCGG--GTTC--------TTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred             EEEccCCcCCCc-h-hhcCC--CCCCEEECCCCCCCCchh--hcCC--------CCCCEEECCCCccCcCcc--ccCCCC
Confidence            555555554432 2 23333  455555555555444321  2222        255566666666554433  566777


Q ss_pred             CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519          520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL  599 (892)
Q Consensus       520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  599 (892)
                      |++|++++|++++. +. +..+++|++|++++|++++..+  +..+++|+.|++++|++++..+  +  ..+++|+.|++
T Consensus       153 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~l  224 (308)
T 1h6u_A          153 LQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L--ANTSNLFIVTL  224 (308)
T ss_dssp             CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G--TTCTTCCEEEE
T ss_pred             ccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--c--cCCCCCCEEEc
Confidence            77777777777743 33 6777777777777777776433  6677777777777777765543  2  66777778888


Q ss_pred             CCCCCcC
Q 047519          600 SHNEFTG  606 (892)
Q Consensus       600 s~N~l~~  606 (892)
                      ++|++++
T Consensus       225 ~~N~i~~  231 (308)
T 1h6u_A          225 TNQTITN  231 (308)
T ss_dssp             EEEEEEC
T ss_pred             cCCeeec
Confidence            8777763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=5e-19  Score=194.27  Aligned_cols=241  Identities=16%  Similarity=0.156  Sum_probs=151.7

Q ss_pred             CEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcch-hhhCCCCccEEEccCCCCCCCCch-hhhhhCCCcccE-E
Q 047519          391 KWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISS-WMWDLGITALYY-L  467 (892)
Q Consensus       391 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~~~L~~-L  467 (892)
                      ++++-+++++  . .+|... .+++++|+|++|+|+.+|. .|.++++|++|+|++|++.+.+|. .|..+  +++.+ +
T Consensus        12 ~~v~C~~~~L--t-~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L--~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKV--T-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL--PKLHEIR   85 (350)
T ss_dssp             TEEEEESTTC--C-SCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC--TTCCEEE
T ss_pred             CEEEecCCCC--C-ccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc--hhhhhhh
Confidence            5677788733  3 344433 4689999999999999985 689999999999999999776664 34444  44433 3


Q ss_pred             EccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEE
Q 047519          468 DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVL  547 (892)
Q Consensus       468 ~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  547 (892)
                      .+..|+++                                ...|..|..+++|++|++++|++++..+..+....++..|
T Consensus        86 ~~~~N~l~--------------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l  133 (350)
T 4ay9_X           86 IEKANNLL--------------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  133 (350)
T ss_dssp             EEEETTCC--------------------------------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred             cccCCccc--------------------------------ccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence            33344444                                4445556666666777777776665555555555566666


Q ss_pred             EccC-CCCCCCcchhccCCC-CCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCC
Q 047519          548 DVGN-NQINDNFPNWLEILP-ELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN  625 (892)
Q Consensus       548 ~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~  625 (892)
                      ++.+ +++....+..|..+. .++.|++++|+++.. +...  ....+|+.+++++|+..+.+|...+.+          
T Consensus       134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~----------  200 (350)
T 4ay9_X          134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSA--FNGTQLDELNLSDNNNLEELPNDVFHG----------  200 (350)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTS--STTEEEEEEECTTCTTCCCCCTTTTTT----------
T ss_pred             hhccccccccccccchhhcchhhhhhccccccccCC-Chhh--ccccchhHHhhccCCcccCCCHHHhcc----------
Confidence            6654 455554444555543 567777777777543 3322  344567777777544444566543322          


Q ss_pred             CccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhc
Q 047519          626 SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLL  705 (892)
Q Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l  705 (892)
                                                       +++|+.|||++|+|+...+..+.+++.|+.++ +  ++++ .+|. +
T Consensus       201 ---------------------------------l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~-~--~~l~-~lP~-l  242 (350)
T 4ay9_X          201 ---------------------------------ASGPVILDISRTRIHSLPSYGLENLKKLRARS-T--YNLK-KLPT-L  242 (350)
T ss_dssp             ---------------------------------EECCSEEECTTSCCCCCCSSSCTTCCEEECTT-C--TTCC-CCCC-T
T ss_pred             ---------------------------------CcccchhhcCCCCcCccChhhhccchHhhhcc-C--CCcC-cCCC-c
Confidence                                             56677788888888744444455555555544 3  4444 5563 6


Q ss_pred             cCCCCCCeeeCCCCc
Q 047519          706 RNLTEVESLDLSSNM  720 (892)
Q Consensus       706 ~~l~~L~~L~Ls~N~  720 (892)
                      .++++|+.++++++.
T Consensus       243 ~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          243 EKLVALMEASLTYPS  257 (350)
T ss_dssp             TTCCSCCEEECSCHH
T ss_pred             hhCcChhhCcCCCCc
Confidence            778888888887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=1.2e-18  Score=176.03  Aligned_cols=109  Identities=20%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519          496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS  575 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  575 (892)
                      +++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            34444444444443334444555555555555555544344445555555555555555554444445555555555555


Q ss_pred             CcCCCCCCCCCCCcCCCCccEEEcCCCCCcC
Q 047519          576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG  606 (892)
Q Consensus       576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  606 (892)
                      |++++..+..+  ..+++|++|++++|++++
T Consensus       110 N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          110 NQLQSLPDGVF--DKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCCSC
T ss_pred             CcCcccCHhHh--ccCCcCCEEECCCCccce
Confidence            55544433333  445555555555555553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=2e-18  Score=174.51  Aligned_cols=181  Identities=16%  Similarity=0.145  Sum_probs=125.1

Q ss_pred             cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519          497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN  576 (892)
Q Consensus       497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  576 (892)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            445555555553 33332  347788888888887666666777788888888888887766666777788888888888


Q ss_pred             cCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHH
Q 047519          577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE  656 (892)
Q Consensus       577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  656 (892)
                      ++++..+..+  ..+++|++|++++|++++..+.. +..                                         
T Consensus        87 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~-----------------------------------------  122 (208)
T 2o6s_A           87 QLQSLPNGVF--DKLTQLKELALNTNQLQSLPDGV-FDK-----------------------------------------  122 (208)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-TTT-----------------------------------------
T ss_pred             cCCccCHhHh--cCccCCCEEEcCCCcCcccCHhH-hcc-----------------------------------------
Confidence            8776555444  67778888888888877543322 111                                         


Q ss_pred             HhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          657 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       657 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                        +++|+.|++++|++++..+..+..+++|+.|+ +++|.+.+.       +++|+.|+++.|+++|.+|.+++.++.
T Consensus       123 --l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          123 --LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW-LHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             --CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE-CCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             --CCcCCEEECCCCccceeCHHHhccCCCccEEE-ecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence              55677788888888766666677778888887 888877643       346777788888888888877776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=8.2e-19  Score=202.55  Aligned_cols=196  Identities=20%  Similarity=0.255  Sum_probs=127.0

Q ss_pred             CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccC
Q 047519          437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVN  516 (892)
Q Consensus       437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~  516 (892)
                      +|+.|++++|.+++ +|..+.    ++|++|++++|.++.++ .   .+        ++|++|++++|.+++ +|. +..
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip-~---~l--------~~L~~L~Ls~N~l~~-ip~-l~~  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP-E---LP--------ASLEYLDACDNRLST-LPE-LPA  120 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC-C---CC--------TTCCEEECCSSCCSC-CCC-CCT
T ss_pred             CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc-c---cc--------CCCCEEEccCCCCCC-cch-hhc
Confidence            67777777777775 554332    66777777777777433 1   12        267777777777776 555 544


Q ss_pred             CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccE
Q 047519          517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI  596 (892)
Q Consensus       517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  596 (892)
                        +|++|++++|++++ +|.   .+++|++|++++|++++ +|.   .+++|++|+|++|++++ +|. +  .  ++|++
T Consensus       121 --~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--~--~~L~~  184 (571)
T 3cvr_A          121 --SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--P--ESLEA  184 (571)
T ss_dssp             --TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C--C--TTCCE
T ss_pred             --CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h--h--CCCCE
Confidence              77777777777775 554   56777777777777776 454   46677777777777766 554 3  3  67777


Q ss_pred             EEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCC
Q 047519          597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI  676 (892)
Q Consensus       597 L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  676 (892)
                      |+|++|+|+ .+|. +..   .|                                    ....+.|+.|+|++|+|+ .+
T Consensus       185 L~Ls~N~L~-~lp~-~~~---~L------------------------------------~~~~~~L~~L~Ls~N~l~-~l  222 (571)
T 3cvr_A          185 LDVSTNLLE-SLPA-VPV---RN------------------------------------HHSEETEIFFRCRENRIT-HI  222 (571)
T ss_dssp             EECCSSCCS-SCCC-CC-----------------------------------------------CCEEEECCSSCCC-CC
T ss_pred             EECcCCCCC-chhh-HHH---hh------------------------------------hcccccceEEecCCCcce-ec
Confidence            777777777 5554 211   00                                    001334577777777777 56


Q ss_pred             hhhhcCccccccccccCCCCCCCCcchhccCCCC
Q 047519          677 PEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTE  710 (892)
Q Consensus       677 p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~  710 (892)
                      |..+..+++|+.|+ |++|+|++.+|..|..++.
T Consensus       223 p~~l~~l~~L~~L~-L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          223 PENILSLDPTCTII-LEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CGGGGGSCTTEEEE-CCSSSCCHHHHHHHHHHHH
T ss_pred             CHHHhcCCCCCEEE-eeCCcCCCcCHHHHHHhhc
Confidence            77777777777777 7777777777777766544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=7.3e-19  Score=179.10  Aligned_cols=158  Identities=24%  Similarity=0.287  Sum_probs=120.5

Q ss_pred             cEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccC
Q 047519          545 EVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNN  624 (892)
Q Consensus       545 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~  624 (892)
                      +++++++|.++. +|..+.  +.+++|++++|++++..+... +..+++|++|++++|++++..|..+ .+         
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~L~~N~i~~i~~~~~-~~---------   79 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGI-FKKLPQLRKINFSNNKITDIEEGAF-EG---------   79 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCC-GGGCTTCCEEECCSSCCCEECTTTT-TT---------
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhh-hccCCCCCEEECCCCcCCEECHHHh-CC---------
Confidence            355666665554 343332  345666666666655433221 2667777777777777775544322 11         


Q ss_pred             CCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchh
Q 047519          625 NSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSL  704 (892)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~  704 (892)
                                                        +++|+.|+|++|++++..|..|.++++|++|+ |++|+|++..|..
T Consensus        80 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~  124 (220)
T 2v70_A           80 ----------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLM-LRSNRITCVGNDS  124 (220)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE-CTTSCCCCBCTTS
T ss_pred             ----------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEE-CCCCcCCeECHhH
Confidence                                              56788888888888888888899999999998 9999999988999


Q ss_pred             ccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCC
Q 047519          705 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       705 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      |.++++|+.|+|++|++++..|..|..+++|+.|++++|++++.++.
T Consensus       125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999999999999999899999999999999999999987764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=3.7e-18  Score=173.87  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      +++|+.|+|++|+|++..+..|.++++|+.|+ |++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~-L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLL-LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCCCCCEEE-CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            45566666666666644445567788888888 88888888888888888999999999999988777788889999999


Q ss_pred             ECCCCcCcccCC
Q 047519          739 NLSYNQFEGPIP  750 (892)
Q Consensus       739 ~ls~N~l~g~iP  750 (892)
                      ++++|++.+..+
T Consensus       158 ~L~~N~~~c~c~  169 (220)
T 2v9t_B          158 HLAQNPFICDCH  169 (220)
T ss_dssp             ECCSSCEECSGG
T ss_pred             EeCCCCcCCCCc
Confidence            999999886543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=1.4e-17  Score=177.47  Aligned_cols=172  Identities=23%  Similarity=0.338  Sum_probs=134.1

Q ss_pred             cCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCc
Q 047519          515 VNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRF  594 (892)
Q Consensus       515 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  594 (892)
                      ..+++|++|++++|.+.+ ++ .+..+++|++|++++|++++..+  +..+++|+.|++++|++++. +. +  ..+++|
T Consensus        43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l--~~l~~L  114 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-SS-L--KDLKKL  114 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-GG-G--TTCTTC
T ss_pred             hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-hh-h--ccCCCC
Confidence            356678888888888774 33 47778888888888888877544  77888888888888887652 22 3  778888


Q ss_pred             cEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCC
Q 047519          595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG  674 (892)
Q Consensus       595 ~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  674 (892)
                      ++|++++|++++. + . +.                                           .+++|+.|++++|++++
T Consensus       115 ~~L~L~~n~i~~~-~-~-l~-------------------------------------------~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A          115 KSLSLEHNGISDI-N-G-LV-------------------------------------------HLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CEEECTTSCCCCC-G-G-GG-------------------------------------------GCTTCCEEECCSSCCCC
T ss_pred             CEEECCCCcCCCC-h-h-hc-------------------------------------------CCCCCCEEEccCCcCCc
Confidence            8888888888753 2 1 11                                           15678889999999885


Q ss_pred             CChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519          675 GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       675 ~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                      .  ..+..+++|+.|+ +++|++++..|  +..+++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus       149 ~--~~l~~l~~L~~L~-L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          149 I--TVLSRLTKLDTLS-LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C--GGGGGCTTCSEEE-CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             c--hhhccCCCCCEEE-ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            4  5788899999998 99999997655  8899999999999999985 45 48899999999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=8.8e-18  Score=185.12  Aligned_cols=178  Identities=25%  Similarity=0.274  Sum_probs=110.3

Q ss_pred             CEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc-CCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519          521 TNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL  599 (892)
Q Consensus       521 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  599 (892)
                      +.++++++.++ .+|..+.  +.++.|+|++|+|++..+..+. .+++|++|+|++|++++..+..+  ..+++|++|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence            45566666665 3444332  3456666666666665555555 66666666666666655554444  56666666666


Q ss_pred             CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519          600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV  679 (892)
Q Consensus       600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~  679 (892)
                      ++|++++..+.. +.+                                           +++|+.|+|++|+|++..|..
T Consensus        96 s~N~l~~~~~~~-~~~-------------------------------------------l~~L~~L~L~~N~i~~~~~~~  131 (361)
T 2xot_A           96 SSNHLHTLDEFL-FSD-------------------------------------------LQALEVLLLYNNHIVVVDRNA  131 (361)
T ss_dssp             CSSCCCEECTTT-TTT-------------------------------------------CTTCCEEECCSSCCCEECTTT
T ss_pred             CCCcCCcCCHHH-hCC-------------------------------------------CcCCCEEECCCCcccEECHHH
Confidence            666666433321 111                                           456667777777777666677


Q ss_pred             hcCccccccccccCCCCCCCCcchhc---cCCCCCCeeeCCCCcCCCCCccccCCCCC--CCEEECCCCcCccc
Q 047519          680 VGKLNLLKGLNNISHNNLTGDIPSLL---RNLTEVESLDLSSNMLVGHIPTQLTSLKY--LSVLNLSYNQFEGP  748 (892)
Q Consensus       680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~ls~N~l~g~  748 (892)
                      |.++++|+.|+ |++|+|++..+..|   ..+++|+.|||++|+|++..+..|..++.  |+.|++++|++.+.
T Consensus       132 ~~~l~~L~~L~-L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          132 FEDMAQLQKLY-LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             TTTCTTCCEEE-CCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             hCCcccCCEEE-CCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            77777777777 77777775444444   56777777777777777655566666665  37778888877754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=5e-17  Score=166.65  Aligned_cols=90  Identities=27%  Similarity=0.288  Sum_probs=73.7

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      +++|+.|+|++|+|++..+..+..+++|+.|+ |++|+|+ .+|..+..+++|+.|+|++|+|++..+..|..+++|+.|
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~-Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF-MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEe-ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            45566677777777655566677888888888 9999888 778888899999999999999997777788889999999


Q ss_pred             ECCCCcCcccCC
Q 047519          739 NLSYNQFEGPIP  750 (892)
Q Consensus       739 ~ls~N~l~g~iP  750 (892)
                      ++++|++++..+
T Consensus       165 ~l~~N~~~c~c~  176 (229)
T 3e6j_A          165 YLFGNPWDCECR  176 (229)
T ss_dssp             ECTTSCBCTTBG
T ss_pred             EeeCCCccCCcc
Confidence            999999988766

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.6e-17  Score=194.03  Aligned_cols=171  Identities=23%  Similarity=0.337  Sum_probs=98.7

Q ss_pred             CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519          516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR  595 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  595 (892)
                      .+++|+.|++++|.+.. +| .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+.+. + .+  ..+++|+
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l--~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SL--KDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TS--TTCTTCC
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hh--ccCCCCC
Confidence            44556666666666552 33 35556666666666666665433  55666666666666666442 2 22  5566666


Q ss_pred             EEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC
Q 047519          596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG  675 (892)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  675 (892)
                      .|+|++|++++. | . +.                                           .+++|+.|+|++|++++.
T Consensus       113 ~L~Ls~N~l~~l-~-~-l~-------------------------------------------~l~~L~~L~Ls~N~l~~l  146 (605)
T 1m9s_A          113 SLSLEHNGISDI-N-G-LV-------------------------------------------HLPQLESLYLGNNKITDI  146 (605)
T ss_dssp             EEECTTSCCCCC-G-G-GG-------------------------------------------GCTTCSEEECCSSCCCCC
T ss_pred             EEEecCCCCCCC-c-c-cc-------------------------------------------CCCccCEEECCCCccCCc
Confidence            666666666532 1 1 11                                           145566666666666643


Q ss_pred             ChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519          676 IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       676 ~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                        ..+..+++|+.|+ |++|+|++..|  +..+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++
T Consensus       147 --~~l~~l~~L~~L~-Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          147 --TVLSRLTKLDTLS-LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             --GGGGSCTTCSEEE-CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred             --hhhcccCCCCEEE-CcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence              4566666666666 66666665544  66666666666666666642 2 46666666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=8.9e-17  Score=163.60  Aligned_cols=116  Identities=16%  Similarity=0.136  Sum_probs=90.6

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence            55666666666666556667777788888888888887777778888888888888888888777888888888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcch
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGY  612 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  612 (892)
                      +|++++..|..+  ..+++|+.|++++|.+++..+..+
T Consensus       138 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~  173 (220)
T 2v70_A          138 DNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAW  173 (220)
T ss_dssp             TSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHH
T ss_pred             CCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHH
Confidence            888887777766  778888888888888887665443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=1.4e-16  Score=162.09  Aligned_cols=137  Identities=18%  Similarity=0.179  Sum_probs=103.2

Q ss_pred             CcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCC
Q 047519          462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC  541 (892)
Q Consensus       462 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  541 (892)
                      ++++.|++++|.++++.+..+..+.        +|++|++++|.+++..|..|..+++|++|+|++|++++..+..|..+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~--------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l  103 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYK--------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL  103 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCT--------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCC--------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence            3455555555555555544444444        66777777777776667778888888888888888886655667888


Q ss_pred             CCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519          542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL  608 (892)
Q Consensus       542 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (892)
                      ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++....
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSG
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCC
Confidence            888888888888888878888888888888888888887776655  77888999999999887543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=6.2e-17  Score=178.29  Aligned_cols=179  Identities=24%  Similarity=0.241  Sum_probs=110.6

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccccc-CCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519          465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV-NSCNLTNLNLNGNRLEGPLPLSLVNCHH  543 (892)
Q Consensus       465 ~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~  543 (892)
                      +.++++++.++.++. .+..          .++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..+++
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~----------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPS----------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN   89 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCT----------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEEEeCCCCcCccCc-cCCC----------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence            567777777766432 2221          456677777777766666665 6777777777777777655566777777


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhccc
Q 047519          544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGN  623 (892)
Q Consensus       544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~  623 (892)
                      |++|+|++|++++..+..|..+++|++|+|++|++++..+..+  ..+++|+.|+|++|+|++ +|...+..+       
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~-l~~~~~~~~-------  159 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISR-FPVELIKDG-------  159 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCS-CCGGGTC---------
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCe-eCHHHhcCc-------
Confidence            7777777777766555566677777777777777766555555  666777777777777663 333322100       


Q ss_pred             CCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccc--ccccccCCCCCC
Q 047519          624 NNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLL--KGLNNISHNNLT  698 (892)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L--~~L~~Ls~N~l~  698 (892)
                                                       ..+++|+.|||++|+|++..+..+..++.+  +.|+ |++|.+.
T Consensus       160 ---------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~-l~~N~~~  202 (361)
T 2xot_A          160 ---------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY-LHNNPLE  202 (361)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE-CCSSCEE
T ss_pred             ---------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE-ecCCCcc
Confidence                                             014556666666666665555555555552  5565 6666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=1.7e-16  Score=168.96  Aligned_cols=188  Identities=24%  Similarity=0.354  Sum_probs=102.1

Q ss_pred             CCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEcc
Q 047519          365 LILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLS  444 (892)
Q Consensus       365 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls  444 (892)
                      +..+.+..+.+++..+   +..+++|++|++++|.+  .. ++....+++|++|++++|+++.++. +..+++|++|+++
T Consensus        26 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i--~~-~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~   98 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDI--KS-VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCC--CC-CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HHHHHhcCCCcccccc---hhhcCcccEEEccCCCc--cc-ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence            3344555555554433   34567777777777733  22 2222256666666666666666655 6666666666666


Q ss_pred             CCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEE
Q 047519          445 KNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN  524 (892)
Q Consensus       445 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  524 (892)
                      +|.+++ ++. +..+  ++|++|++++|++++.                                  ..+..+++|++|+
T Consensus        99 ~n~l~~-~~~-l~~l--~~L~~L~L~~n~i~~~----------------------------------~~l~~l~~L~~L~  140 (291)
T 1h6t_A           99 ENKVKD-LSS-LKDL--KKLKSLSLEHNGISDI----------------------------------NGLVHLPQLESLY  140 (291)
T ss_dssp             SSCCCC-GGG-GTTC--TTCCEEECTTSCCCCC----------------------------------GGGGGCTTCCEEE
T ss_pred             CCcCCC-Chh-hccC--CCCCEEECCCCcCCCC----------------------------------hhhcCCCCCCEEE
Confidence            666654 222 4444  5555555555555442                                  2344455555555


Q ss_pred             ccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCC
Q 047519          525 LNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEF  604 (892)
Q Consensus       525 L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  604 (892)
                      +++|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|.+++. +. +  ..+++|+.|++++|++
T Consensus       141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~-l--~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RA-L--AGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GG-G--TTCTTCSEEEEEEEEE
T ss_pred             ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hh-h--ccCCCCCEEECcCCcc
Confidence            555555532  345555555555555555555333  55555555555555555432 21 2  4555556666665555


Q ss_pred             c
Q 047519          605 T  605 (892)
Q Consensus       605 ~  605 (892)
                      +
T Consensus       213 ~  213 (291)
T 1h6t_A          213 L  213 (291)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1.8e-16  Score=185.14  Aligned_cols=151  Identities=22%  Similarity=0.290  Sum_probs=87.9

Q ss_pred             hhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccc
Q 047519          432 LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS  511 (892)
Q Consensus       432 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~  511 (892)
                      +..+++|+.|+|++|.+.+..+  +..+  ++|+.|+|++|.+++..  .+..+        ++|+.|+|++|.+.+.  
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l--~~L~~L~Ls~N~l~~l~--~l~~l--------~~L~~L~Ls~N~l~~l--  124 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP--LTNL--KNLGWLFLDENKIKDLS--SLKDL--------KKLKSLSLEHNGISDI--  124 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG--GGGC--TTCCEEECCSSCCCCCT--TSTTC--------TTCCEEECTTSCCCCC--
T ss_pred             HccCCCCCEEEeeCCCCCCChh--hccC--CCCCEEECcCCCCCCCh--hhccC--------CCCCEEEecCCCCCCC--
Confidence            4445555555555555554333  3333  55555555555554421  22222        2556666666666542  


Q ss_pred             ccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCC
Q 047519          512 QKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPF  591 (892)
Q Consensus       512 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  591 (892)
                      ..+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|++++. + .+  ..+
T Consensus       125 ~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l--~~l  196 (605)
T 1m9s_A          125 NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-AL--AGL  196 (605)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GG--TTC
T ss_pred             ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HH--ccC
Confidence            2356666777777777777643  456667777777777777766544  66677777777777776553 2 22  566


Q ss_pred             CCccEEEcCCCCCcC
Q 047519          592 PRFRIIDLSHNEFTG  606 (892)
Q Consensus       592 ~~L~~L~Ls~N~l~~  606 (892)
                      ++|+.|+|++|++++
T Consensus       197 ~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          197 KNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCSEEECCSEEEEC
T ss_pred             CCCCEEEccCCcCcC
Confidence            777777777777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=3e-17  Score=163.27  Aligned_cols=156  Identities=19%  Similarity=0.287  Sum_probs=118.5

Q ss_pred             CEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519          569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI  648 (892)
Q Consensus       569 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (892)
                      +++++++|.+ +.+|..+    ..+|++|++++|++++..+...+..                                 
T Consensus        11 ~~l~~s~~~l-~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~---------------------------------   52 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDI----PLHTTELLLNDNELGRISSDGLFGR---------------------------------   52 (192)
T ss_dssp             TEEECTTSCC-SSCCSCC----CTTCSEEECCSCCCCSBCCSCSGGG---------------------------------
T ss_pred             CEEEcCCCCc-CcCccCC----CCCCCEEECCCCcCCccCCcccccc---------------------------------
Confidence            5667777766 3445433    2378888888888876555332221                                 


Q ss_pred             ccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc
Q 047519          649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ  728 (892)
Q Consensus       649 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  728 (892)
                                +++|+.|+|++|+|++..|..|.++++|++|+ |++|+|++..|..|+++++|++|+|++|++++.+|..
T Consensus        53 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  121 (192)
T 1w8a_A           53 ----------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQ-LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             ----------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE-CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             ----------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEE-CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence                      66788999999999988899999999999998 9999999888888999999999999999999999999


Q ss_pred             cCCCCCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCC
Q 047519          729 LTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP  773 (892)
Q Consensus       729 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~  773 (892)
                      |..+++|++|++++|+++|.+|.......+....+.++...|+.|
T Consensus       122 ~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             STTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             hhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999999999999999999887743211112233344555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=3.7e-16  Score=160.12  Aligned_cols=156  Identities=20%  Similarity=0.102  Sum_probs=99.0

Q ss_pred             ccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519          415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL  494 (892)
Q Consensus       415 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~  494 (892)
                      .+.++.+++.++.+|..+.  ++|++|++++|.+++..|..+..+  ++|++|++++|+++                   
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~N~l~-------------------   77 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSL--INLKELYLGSNQLG-------------------   77 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCC-------------------
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCc--cCCcEEECCCCCCC-------------------
Confidence            4456666666666665332  556666666666665555555544  55555555555444                   


Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                                   ...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++. +|..+..+++|++|+|+
T Consensus        78 -------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           78 -------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALD  143 (229)
T ss_dssp             -------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECC
T ss_pred             -------------CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECC
Confidence                         3333445566677777777777776555566777777777777777764 56667777777777777


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (892)
                      +|++++..+..+  ..+++|+.|++++|.+++..+
T Consensus       144 ~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          144 QNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTBG
T ss_pred             CCcCCccCHHHH--hCCCCCCEEEeeCCCccCCcc
Confidence            777765555444  667778888888887776544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.5e-17  Score=199.28  Aligned_cols=227  Identities=16%  Similarity=0.139  Sum_probs=93.9

Q ss_pred             CCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcccccccc
Q 047519          436 HQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV  515 (892)
Q Consensus       436 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~  515 (892)
                      +.++.|+|.+|.+... +.       ..|+.++|+.|.+.                      .+++..|.+. ..+..+.
T Consensus       173 ~~~~~l~L~~n~~~~~-~~-------~~l~~l~Ls~~~i~----------------------~~~~~~n~~~-~~~~~~~  221 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQ-------ALLQHKKLSQYSID----------------------EDDDIENRMV-MPKDSKY  221 (727)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccceEEeeCCCCCcc-hh-------hHhhcCccCccccc----------------------Ccccccccee-cChhhhc
Confidence            4566677777766542 22       33444555554433                      3344444444 4455666


Q ss_pred             CCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCcc
Q 047519          516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFR  595 (892)
Q Consensus       516 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  595 (892)
                      .++.|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|..+++|++|+|++|.|+ .+|..+  ..+++|+
T Consensus       222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~  296 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLK  296 (727)
T ss_dssp             CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCS
T ss_pred             cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCC
Confidence            6677777777777776 55655666777777777777776 46666777777777777777776 556555  6667777


Q ss_pred             EEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC
Q 047519          596 IIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG  675 (892)
Q Consensus       596 ~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  675 (892)
                      +|+|++|.|+ .+|..+ ++                                           +++|+.|+|++|.|++.
T Consensus       297 ~L~L~~N~l~-~lp~~~-~~-------------------------------------------l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          297 YFYFFDNMVT-TLPWEF-GN-------------------------------------------LCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             EEECCSSCCC-CCCSST-TS-------------------------------------------CTTCCCEECTTSCCCSH
T ss_pred             EEECCCCCCC-ccChhh-hc-------------------------------------------CCCccEEeCCCCccCCC
Confidence            7777777765 555442 21                                           45666777777777777


Q ss_pred             ChhhhcCcccc-ccccccCCCCCCCCcchhccCCCCCCeeeCCCC--------cCCCCCccccCCCCCCCEEECCCCcCc
Q 047519          676 IPEVVGKLNLL-KGLNNISHNNLTGDIPSLLRNLTEVESLDLSSN--------MLVGHIPTQLTSLKYLSVLNLSYNQFE  746 (892)
Q Consensus       676 ~p~~~~~l~~L-~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~l~~L~~L~ls~N~l~  746 (892)
                      +|..+..+... ..|+ |++|.++|.+|..      |+.|++++|        .+.+.++..+..+..+....+++|-+.
T Consensus       332 ~p~~~~~~~~~~~~l~-l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFY-LRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             ChHHHhhcchhhhHHh-hccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            77666554322 2355 7777777777653      445556665        444455555666777777788888776


Q ss_pred             ccCC
Q 047519          747 GPIP  750 (892)
Q Consensus       747 g~iP  750 (892)
                      +...
T Consensus       405 ~~~~  408 (727)
T 4b8c_D          405 QHYA  408 (727)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence            4443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.8e-19  Score=209.38  Aligned_cols=204  Identities=11%  Similarity=0.002  Sum_probs=121.0

Q ss_pred             cCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCccc-------------CCcchhhhhhcccCCCCCCCEEe-cC
Q 047519          112 SQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFA-------------FSDCFQLDVKTTFLHDDLEEEIY-MT  177 (892)
Q Consensus       112 ~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~-------------~~~~~p~~l~~~~~~l~~L~~L~-L~  177 (892)
                      ..+++|+.|+|++|.+. .+|..|+  +|++|+.|+++++.             ..+..|..++    ++++|+.|+ ++
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~--~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~----~l~~L~~L~~l~  418 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELE--SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ----YFSTLKAVDPMR  418 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHH--HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH----HHHHHHHHCGGG
T ss_pred             ccCccceeccCChhhHH-hhHHHHH--HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH----HHHhcccCcchh
Confidence            56778888888888775 7788887  88888888876643             2344455555    555555555 33


Q ss_pred             CccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCCCcCCcccc
Q 047519          178 QLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGL  257 (892)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~~~~~~~l~  257 (892)
                      .+.+            .+|+.+.+++|  .++...                      ...|++|++++|.+.+       
T Consensus       419 ~n~~------------~~L~~l~l~~n--~i~~l~----------------------~~~L~~L~Ls~n~l~~-------  455 (567)
T 1dce_A          419 AAYL------------DDLRSKFLLEN--SVLKME----------------------YADVRVLHLAHKDLTV-------  455 (567)
T ss_dssp             HHHH------------HHHHHHHHHHH--HHHHHH----------------------HTTCSEEECTTSCCSS-------
T ss_pred             hccc------------chhhhhhhhcc--cccccC----------------------ccCceEEEecCCCCCC-------
Confidence            3322            23333344444  222110                      0246667777665543       


Q ss_pred             CCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCC
Q 047519          258 LFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRG  337 (892)
Q Consensus       258 ~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~  337 (892)
                                     +|  .++.+++|++|+|++|.++ .+|..++.+++|+.|+++   +|.+++ +|.+       +.
T Consensus       456 ---------------lp--~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls---~N~l~~-lp~l-------~~  506 (567)
T 1dce_A          456 ---------------LC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQAS---DNALEN-VDGV-------AN  506 (567)
T ss_dssp             ---------------CC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC---SSCCCC-CGGG-------TT
T ss_pred             ---------------Cc--CccccccCcEeecCccccc-ccchhhhcCCCCCEEECC---CCCCCC-Cccc-------CC
Confidence                           12  2455666666777777666 566666666677777776   666654 4556       66


Q ss_pred             CCCcCEEEccCCcCCcCC-CccccCCCCCCEEECcCCcCCCccCh--hhcCCCCCCCEEE
Q 047519          338 RRHYAEPHFSSNQLSGSI-PSSVYELENLILLRLPSNRLSGTTEL--YDFAKLKNLKWLF  394 (892)
Q Consensus       338 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~  394 (892)
                      +++|++|++++|.+++.. |..++.+++|+.|+|++|.+++..+.  ..+..+++|+.|+
T Consensus       507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            666666666666666554 66666666666666666666644331  1122355666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.1e-16  Score=159.99  Aligned_cols=84  Identities=23%  Similarity=0.320  Sum_probs=57.6

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCC-CCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNN-LTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  737 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~-l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  737 (892)
                      +++|+.|++++|++++..|..++.+++|++|+ +++|+ ++ .+| .+.++++|+.|++++|++++ ++ .+..+++|++
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~-L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSID-LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE-CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEE-ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence            45566666666666666666777777777777 88777 44 555 57778888888888888875 33 6777788888


Q ss_pred             EECCCCcCcc
Q 047519          738 LNLSYNQFEG  747 (892)
Q Consensus       738 L~ls~N~l~g  747 (892)
                      |++++|++.+
T Consensus       186 L~l~~N~i~~  195 (197)
T 4ezg_A          186 LYAFSQTIGG  195 (197)
T ss_dssp             EEECBC----
T ss_pred             EEeeCcccCC
Confidence            8888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=8.3e-17  Score=168.67  Aligned_cols=168  Identities=20%  Similarity=0.226  Sum_probs=97.2

Q ss_pred             CCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEE
Q 047519          519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIID  598 (892)
Q Consensus       519 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  598 (892)
                      ++..+++++|.+++ ++ .+..+++|++|++++|+++. +| .+..+++|+.|++++|++++..+  +  ..+++|++|+
T Consensus        20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~   91 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEE
T ss_pred             HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEE
Confidence            34444455555542 22 34445555555555555544 22 34455555555555555544333  2  4555555555


Q ss_pred             cCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChh
Q 047519          599 LSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPE  678 (892)
Q Consensus       599 Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~  678 (892)
                      +++|++++ +|...                                              .+.|+.|++++|++++ +| 
T Consensus        92 L~~N~l~~-l~~~~----------------------------------------------~~~L~~L~L~~N~l~~-~~-  122 (263)
T 1xeu_A           92 VNRNRLKN-LNGIP----------------------------------------------SACLSRLFLDNNELRD-TD-  122 (263)
T ss_dssp             CCSSCCSC-CTTCC----------------------------------------------CSSCCEEECCSSCCSB-SG-
T ss_pred             CCCCccCC-cCccc----------------------------------------------cCcccEEEccCCccCC-Ch-
Confidence            55555553 22100                                              1245566666666663 33 


Q ss_pred             hhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCccc
Q 047519          679 VVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP  748 (892)
Q Consensus       679 ~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  748 (892)
                      .+..+++|+.|+ +++|++++. | .++.+++|+.|+|++|++++.  ..+..+++|+.|++++|++++.
T Consensus       123 ~l~~l~~L~~L~-Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          123 SLIHLKNLEILS-IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GGTTCTTCCEEE-CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hhcCcccccEEE-CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            466777777776 777777743 3 577777778888888877755  5677777888888888877754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=9.1e-19  Score=203.41  Aligned_cols=140  Identities=19%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCC-------------CCCCCchhhhhhCCCcccEEE-ccCCCCCC
Q 047519          411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNR-------------IHGRISSWMWDLGITALYYLD-LSNNFLTN  476 (892)
Q Consensus       411 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~~~L~~L~-Ls~n~l~~  476 (892)
                      ..++|+.|+|++|.++.+|..++.+++|+.|++++|.             +.+.+|..+..+  ++|+.|+ ++.|.+. 
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l--~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYLD-  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH--HHHHHHCGGGHHHHH-
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH--HhcccCcchhhcccc-
Confidence            4567777788888888888888888888888887664             445566666666  7777776 5554432 


Q ss_pred             CCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 047519          477 IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND  556 (892)
Q Consensus       477 ~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~  556 (892)
                                        .|..+.+++|.++...+.      .|+.|++++|.+++ +|. +..+++|+.|+|++|+|+ 
T Consensus       424 ------------------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-  476 (567)
T 1dce_A          424 ------------------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-  476 (567)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-
T ss_pred             ------------------hhhhhhhhcccccccCcc------CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-
Confidence                              334444444444432211      35555555555553 343 555555555555555555 


Q ss_pred             CcchhccCCCCCCEEEccCCcCCC
Q 047519          557 NFPNWLEILPELQVLILRSNRFWG  580 (892)
Q Consensus       557 ~~p~~~~~l~~L~~L~L~~N~l~~  580 (892)
                      .+|..++.+++|+.|+|++|++++
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             ccchhhhcCCCCCEEECCCCCCCC
Confidence            245455555555555555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2e-16  Score=165.79  Aligned_cols=168  Identities=21%  Similarity=0.262  Sum_probs=135.4

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      .+..+++++|.+++..  .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4455566666666433  4667889999999999988 455 68889999999999999988544  8899999999999


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|++++. |..   .. ++|+.|++++|++++. | . +.                                        
T Consensus        94 ~N~l~~l-~~~---~~-~~L~~L~L~~N~l~~~-~-~-l~----------------------------------------  125 (263)
T 1xeu_A           94 RNRLKNL-NGI---PS-ACLSRLFLDNNELRDT-D-S-LI----------------------------------------  125 (263)
T ss_dssp             SSCCSCC-TTC---CC-SSCCEEECCSSCCSBS-G-G-GT----------------------------------------
T ss_pred             CCccCCc-Ccc---cc-CcccEEEccCCccCCC-h-h-hc----------------------------------------
Confidence            9999763 332   22 8999999999999853 2 1 11                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGH  724 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  724 (892)
                         .+++|+.|++++|++++. | .++.+++|+.|+ +++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       126 ---~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~-L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          126 ---HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLD-LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ---TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEE-CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ---CcccccEEECCCCcCCCC-h-HHccCCCCCEEE-CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence               167899999999999954 4 689999999998 999999976  6789999999999999999865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=9.2e-16  Score=153.31  Aligned_cols=150  Identities=16%  Similarity=0.210  Sum_probs=70.5

Q ss_pred             CCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecC
Q 047519          412 FPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFD  491 (892)
Q Consensus       412 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~  491 (892)
                      +++|++|++++|.++.+| .+..+++|++|++++|.+..  +..+..+  ++|++|++++|.+++..+..+..+.     
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~-----  112 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGL--SNLERLRIMGKDVTSDKIPNLSGLT-----  112 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTC--TTCCEEEEECTTCBGGGSCCCTTCT-----
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcC--CCCCEEEeECCccCcccChhhcCCC-----
Confidence            445555555555555555 45666666666666665542  2234444  5555555555555543333333332     


Q ss_pred             CCCcccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCE
Q 047519          492 SNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQV  570 (892)
Q Consensus       492 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  570 (892)
                         +|++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.
T Consensus       113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~  185 (197)
T 4ezg_A          113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ  185 (197)
T ss_dssp             ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred             ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence               44444444444444444444444444444444444 32 222 34444444444444444443 11 3334444444


Q ss_pred             EEccCCcC
Q 047519          571 LILRSNRF  578 (892)
Q Consensus       571 L~L~~N~l  578 (892)
                      |++++|++
T Consensus       186 L~l~~N~i  193 (197)
T 4ezg_A          186 LYAFSQTI  193 (197)
T ss_dssp             EEECBC--
T ss_pred             EEeeCccc
Confidence            44444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.62  E-value=1.9e-16  Score=189.86  Aligned_cols=226  Identities=21%  Similarity=0.170  Sum_probs=116.6

Q ss_pred             CCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeec
Q 047519          411 SFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNF  490 (892)
Q Consensus       411 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l  490 (892)
                      ..+.++.|+|..|.+...+..     .|+.++|+.|.|.+.                +++.|.+. ..+..+..+.    
T Consensus       171 s~~~~~~l~L~~n~~~~~~~~-----~l~~l~Ls~~~i~~~----------------~~~~n~~~-~~~~~~~~l~----  224 (727)
T 4b8c_D          171 STPLTPKIELFANGKDEANQA-----LLQHKKLSQYSIDED----------------DDIENRMV-MPKDSKYDDQ----  224 (727)
T ss_dssp             -------------------------------------------------------------------------CCC----
T ss_pred             cCCccceEEeeCCCCCcchhh-----HhhcCccCcccccCc----------------ccccccee-cChhhhccCC----
Confidence            346788999999988876543     355666666665432                22233333 2333444444    


Q ss_pred             CCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCE
Q 047519          491 DSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQV  570 (892)
Q Consensus       491 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  570 (892)
                          .|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|+|+ .+|..|..+++|++
T Consensus       225 ----~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          225 ----LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY  297 (727)
T ss_dssp             ----CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred             ----CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence                7788888888887 56666778999999999999999 88999999999999999999999 57999999999999


Q ss_pred             EEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEcc
Q 047519          571 LILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKG  650 (892)
Q Consensus       571 L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (892)
                      |+|++|.++ .+|..+  ..+++|++|+|++|.|++.+|..+ ...                                  
T Consensus       298 L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~-~~~----------------------------------  339 (727)
T 4b8c_D          298 FYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL-TEK----------------------------------  339 (727)
T ss_dssp             EECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHH-HHH----------------------------------
T ss_pred             EECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHH-hhc----------------------------------
Confidence            999999996 677766  889999999999999998887543 211                                  


Q ss_pred             chhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCC--------CCCCCcchhccCCCCCCeeeCCCCcCC
Q 047519          651 IDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN--------NLTGDIPSLLRNLTEVESLDLSSNMLV  722 (892)
Q Consensus       651 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N--------~l~~~ip~~l~~l~~L~~L~Ls~N~l~  722 (892)
                              ......++|++|.+++.+|..+      +.|+ +++|        .|.+.++..+.++..++...+++|-+.
T Consensus       340 --------~~~~~~l~l~~N~l~~~~p~~l------~~l~-l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          340 --------SVTGLIFYLRDNRPEIPLPHER------RFIE-INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------HHHHHHHHHHHCCCCCCCCCC------------------------------------------------CCC
T ss_pred             --------chhhhHHhhccCcccCcCcccc------ceeE-eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence                    1112347788899988888644      4455 6666        555555566677777888888888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=9e-15  Score=145.33  Aligned_cols=114  Identities=21%  Similarity=0.231  Sum_probs=89.2

Q ss_pred             cccEEECCCCccCccccc-cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          495 THKVLDMRMNNFNGKISQ-KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      .+++|++++|.+++..+. .|..+++|++|++++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            456677777777655553 4777888888888888888777888888888888888888888877777888888888888


Q ss_pred             cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCc
Q 047519          574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPT  610 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  610 (892)
                      ++|++++..|..+  ..+++|++|++++|.+++..+.
T Consensus       110 ~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          110 YDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcc
Confidence            8888887777766  7788888888888888876554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=2.7e-15  Score=163.00  Aligned_cols=258  Identities=10%  Similarity=0.033  Sum_probs=156.0

Q ss_pred             CCCCcEEEccCCCCC--cCCCccccCCCCCcEEecCccccccceeecc--chhhhhhccCC--------CCCcCEEEccC
Q 047519          281 LDKRRSITGYVFNFA--GGPINWKSTLQSTVVLSTTEAEYMAITKAVK--EAIWLQVFVRG--------RRHYAEPHFSS  348 (892)
Q Consensus       281 l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--~l~~l~l~~~~--------l~~L~~L~Ls~  348 (892)
                      +++|++|+|++|++.  ...+..   ++.++.+.+.   .+    .+|  .|       .+        +++|++|++..
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~---~~----~I~~~aF-------~~~~~~~~~g~~~L~~l~L~~  110 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYM---AN----FVPAYAF-------SNVVNGVTKGKQTLEKVILSE  110 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEEC---TT----EECTTTT-------EEEETTEEEECTTCCC-CBCT
T ss_pred             hccCeEEecCcceeEEecCcccc---cccccccccc---cc----ccCHHHh-------cccccccccccCCCcEEECCc
Confidence            788999999999877  222211   2223344443   33    233  44       45        88999999988


Q ss_pred             CcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCC--CCCccccCCC-CCCCcc-EEEccCCC
Q 047519          349 NQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRL--SLSTKLKVNS-SFPNLF-GLGLSACN  424 (892)
Q Consensus       349 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~-~l~~L~-~L~L~~n~  424 (892)
                       .++...+.+|.++++|+.+++++|.++ .++...|..+.++..+.+..+..  .........+ .+.+|+ .+.+... 
T Consensus       111 -~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~-  187 (329)
T 3sb4_A          111 -KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM-  187 (329)
T ss_dssp             -TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT-
T ss_pred             -cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC-
Confidence             787677778889999999999999887 45557888877777776655310  0011111112 445555 4444332 


Q ss_pred             CCCcchhhh----CCCCccEEEccCCCCCCCCchhhh-hhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEE
Q 047519          425 ISEFPDILR----TLHQLQWFNLSKNRIHGRISSWMW-DLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVL  499 (892)
Q Consensus       425 l~~lp~~l~----~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L  499 (892)
                       ..++..+.    ...+++.+.+.++-.. .....+. .+  ++|+.+++++|+++.+....|..+.        +|+.+
T Consensus       188 -~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~--~~L~~l~L~~n~i~~I~~~aF~~~~--------~L~~l  255 (329)
T 3sb4_A          188 -GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYM--PNLVSLDISKTNATTIPDFTFAQKK--------YLLKI  255 (329)
T ss_dssp             -CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHC--TTCCEEECTTBCCCEECTTTTTTCT--------TCCEE
T ss_pred             -CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhc--CCCeEEECCCCCcceecHhhhhCCC--------CCCEE
Confidence             23333221    2455666666655221 1111121 23  7777777777777766666655544        66777


Q ss_pred             ECCCCccCccccccccCCCCCC-EEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEE
Q 047519          500 DMRMNNFNGKISQKFVNSCNLT-NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLI  572 (892)
Q Consensus       500 ~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  572 (892)
                      ++.+| +....+..|.++.+|+ .+++.+ .++...+.+|.+|++|+.+++++|+++.+.+..|.++++|+.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77766 5555556677777777 777766 55545556677777777777777777666666677777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=1.1e-14  Score=141.34  Aligned_cols=63  Identities=21%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             CCCcEEEccCCCCC-CCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519          542 HHLEVLDVGNNQIN-DNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL  608 (892)
Q Consensus       542 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (892)
                      ++|++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+  ..+++|++|++++|++++.+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~   87 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGL   87 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHH
Confidence            44555555555554 33444444555555555555555433  222  44555555555555555433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1e-14  Score=141.59  Aligned_cols=138  Identities=24%  Similarity=0.268  Sum_probs=117.4

Q ss_pred             CCCCCCEEEccCCcCC-CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccc
Q 047519          564 ILPELQVLILRSNRFW-GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYE  642 (892)
Q Consensus       564 ~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~  642 (892)
                      ..++|+.|++++|.++ +.+|..+  ..+++|++|++++|.+++. + . +.                            
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n~l~~~-~-~-~~----------------------------   68 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLISV-S-N-LP----------------------------   68 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESSCCCCC-S-S-CC----------------------------
T ss_pred             CcccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCCCCCCh-h-h-hc----------------------------
Confidence            4578999999999998 6777765  8889999999999999855 2 2 11                            


Q ss_pred             eEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCc-chhccCCCCCCeeeCCCCcC
Q 047519          643 SIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI-PSLLRNLTEVESLDLSSNML  721 (892)
Q Consensus       643 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l  721 (892)
                                     .+++|+.|++++|++++.+|..+..+++|+.|+ +++|++++.. +..+..+++|+.|++++|++
T Consensus        69 ---------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A           69 ---------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN-LSGNKLKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             ---------------CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE-CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             ---------------cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe-ccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence                           167899999999999988999999999999999 9999999643 37899999999999999999


Q ss_pred             CCCCc---cccCCCCCCCEEECCCCcCcccCCC
Q 047519          722 VGHIP---TQLTSLKYLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       722 ~~~ip---~~l~~l~~L~~L~ls~N~l~g~iP~  751 (892)
                      ++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       133 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          133 TNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             GTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             cchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            97665   58999999999999999987 4453

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=144.49  Aligned_cols=131  Identities=21%  Similarity=0.180  Sum_probs=106.0

Q ss_pred             CEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEE
Q 047519          569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTI  648 (892)
Q Consensus       569 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (892)
                      +++++++|.++ .+|..+    .++|++|++++|+++ .+|.. +.                                  
T Consensus        13 ~~l~~~~~~l~-~ip~~~----~~~l~~L~L~~n~i~-~ip~~-~~----------------------------------   51 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI----PRDVTELYLDGNQFT-LVPKE-LS----------------------------------   51 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC----CTTCCEEECCSSCCC-SCCGG-GG----------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCC----CCCCCEEECCCCcCc-hhHHH-hh----------------------------------
Confidence            45666666664 344332    257888888888887 55533 22                                  


Q ss_pred             ccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc
Q 047519          649 KGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ  728 (892)
Q Consensus       649 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  728 (892)
                               .+++|+.|+|++|+|++..|..|.++++|+.|+ |++|+|++..|..|.++++|+.|+|++|+|++..+..
T Consensus        52 ---------~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~-Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~  121 (193)
T 2wfh_A           52 ---------NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI-LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA  121 (193)
T ss_dssp             ---------GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             ---------cccCCCEEECCCCcCCEeCHhHccCCCCCCEEE-CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence                     166788999999999988888899999999998 9999999888889999999999999999999777778


Q ss_pred             cCCCCCCCEEECCCCcCcccCC
Q 047519          729 LTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       729 l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      |..+++|+.|++++|++.+..+
T Consensus       122 ~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          122 FNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             TTTCTTCCEEECCSSCEECSGG
T ss_pred             hhcCccccEEEeCCCCeecCCc
Confidence            9999999999999999987554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=6.6e-14  Score=137.14  Aligned_cols=92  Identities=26%  Similarity=0.290  Sum_probs=78.4

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      +++|+.|++++|++++..+..++.+++|+.|+ +++|+|++..+..|+++++|+.|+|++|++++..+..+..+++|++|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY-LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEE-CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence            56677888888888866666778899999998 99999998777788999999999999999997666667889999999


Q ss_pred             ECCCCcCcccCCC
Q 047519          739 NLSYNQFEGPIPQ  751 (892)
Q Consensus       739 ~ls~N~l~g~iP~  751 (892)
                      ++++|+++|.+|.
T Consensus       130 ~l~~N~~~~~~~~  142 (177)
T 2o6r_A          130 WLHTNPWDCSCPR  142 (177)
T ss_dssp             ECCSSCBCCCHHH
T ss_pred             EecCCCeeccCcc
Confidence            9999999988773

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=2.1e-14  Score=136.28  Aligned_cols=80  Identities=25%  Similarity=0.288  Sum_probs=36.7

Q ss_pred             hheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCC-cchhccCCCCCCeeeCCCCcCCCCCc---cccCCCCCCC
Q 047519          661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGD-IPSLLRNLTEVESLDLSSNMLVGHIP---TQLTSLKYLS  736 (892)
Q Consensus       661 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~-ip~~l~~l~~L~~L~Ls~N~l~~~ip---~~l~~l~~L~  736 (892)
                      .|+.|++++|++++.+|..++.+++|++|+ +++|++++. .|..++++++|+.|++++|++++..+   ..+..+++|+
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLN-LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEE-CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEE-CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            334444444444433444444444444454 555554432 22444555555555555555544333   3444455555


Q ss_pred             EEECC
Q 047519          737 VLNLS  741 (892)
Q Consensus       737 ~L~ls  741 (892)
                      .||++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            55543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=3.3e-13  Score=132.17  Aligned_cols=133  Identities=17%  Similarity=0.151  Sum_probs=106.7

Q ss_pred             ccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519          464 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHH  543 (892)
Q Consensus       464 L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  543 (892)
                      .+.+++++|.++..+...+.           +++.|++++|++++..+..|..+++|++|++++|++++..+..+..+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPS-----------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCccCCCCCCC-----------CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence            45666777766655432221           6678888888888766677788899999999999999776777889999


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519          544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (892)
                      |++|++++|++++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|++++..|
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            9999999999998777778899999999999999986655544  778999999999999987765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=1.8e-14  Score=156.53  Aligned_cols=201  Identities=11%  Similarity=0.113  Sum_probs=133.8

Q ss_pred             CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC----CCCCCCCCCCcCCC
Q 047519          517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF----WGPIGDNTTIVPFP  592 (892)
Q Consensus       517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~~~l~  592 (892)
                      +++|+.|+|.+ .++...+.+|.+|++|+.|++++|.+....+.+|.++.++..+.+..+..    ...  ....+..+.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i--~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW--EHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT--TTSCEEESC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc--ccccccccc
Confidence            88888888888 77756666788888888888888888777777777777777666655321    111  112224455


Q ss_pred             Ccc-EEEcCCCCCcCcCCcchhhh---hhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh-HHHhhhhheeeec
Q 047519          593 RFR-IIDLSHNEFTGVLPTGYLDN---FKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ-IERILTIFMTIDL  667 (892)
Q Consensus       593 ~L~-~L~Ls~N~l~~~~p~~~~~~---l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~LdL  667 (892)
                      .|+ .+++....   .++...+..   ...+..+...+.                    +...... +...+++|+.++|
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~--------------------l~~~~~~~l~~~~~~L~~l~L  233 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK--------------------LDNADFKLIRDYMPNLVSLDI  233 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC--------------------CCHHHHHHHHHHCTTCCEEEC
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeee--------------------ecHHHHHHHHHhcCCCeEEEC
Confidence            555 44444321   222222111   111222111110                    0001111 1223688999999


Q ss_pred             CCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCC-eeeCCCCcCCCCCccccCCCCCCCEEECCCCcCc
Q 047519          668 SSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVE-SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  746 (892)
Q Consensus       668 s~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  746 (892)
                      ++|+++...+..|.++.+|+.++ +++| ++..-+.+|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++
T Consensus       234 ~~n~i~~I~~~aF~~~~~L~~l~-l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQKKYLLKIK-LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTBCCCEECTTTTTTCTTCCEEE-CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCcceecHhhhhCCCCCCEEE-CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            99999966667799999999998 9998 8766778899999999 999998 787677789999999999999999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=3.3e-13  Score=133.92  Aligned_cols=134  Identities=19%  Similarity=0.137  Sum_probs=107.9

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCC
Q 047519          465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHL  544 (892)
Q Consensus       465 ~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  544 (892)
                      +.+++++|.++.++...+.           ++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPR-----------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCT-----------TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCcCCCCCCC-----------CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            4566666666654332211           6677888888887 566788899999999999999998878889999999


Q ss_pred             cEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcch
Q 047519          545 EVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGY  612 (892)
Q Consensus       545 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  612 (892)
                      ++|+|++|+|++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|.+.......+
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~  146 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQW  146 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHH
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHH
Confidence            999999999999888889999999999999999987666555  788999999999999986544333

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=1.6e-13  Score=130.25  Aligned_cols=128  Identities=27%  Similarity=0.304  Sum_probs=97.5

Q ss_pred             CCCCCcCEEEccCCcCC-cCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCC
Q 047519          336 RGRRHYAEPHFSSNQLS-GSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFP  413 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~  413 (892)
                      ...++|++|++++|.++ +.+|..+..+++|++|++++|.+++.   ..+..+++|++|++++|  .+.+.++... .++
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~   88 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN--RVSGGLEVLAEKCP   88 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS--CCCSCTHHHHHHCT
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC--cccchHHHHhhhCC
Confidence            45577888888888887 67787788888888888888888754   46778888888888888  4455455444 578


Q ss_pred             CccEEEccCCCCCCcc--hhhhCCCCccEEEccCCCCCCCCc---hhhhhhCCCcccEEEcc
Q 047519          414 NLFGLGLSACNISEFP--DILRTLHQLQWFNLSKNRIHGRIS---SWMWDLGITALYYLDLS  470 (892)
Q Consensus       414 ~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~~~L~~L~Ls  470 (892)
                      +|++|++++|.++.+|  ..+..+++|++|++++|.+++..+   ..+..+  ++|+.|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL--PQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC--TTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC--CCcccccCC
Confidence            8888888888888654  677888888888888888876555   456666  788888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=2.1e-13  Score=132.39  Aligned_cols=92  Identities=24%  Similarity=0.260  Sum_probs=85.1

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      .+.++.|+|++|+|++..|..|.++++|++|+ |++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~-Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLD-LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEE-CCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence            35688999999999988899999999999999 99999998888889999999999999999998877789999999999


Q ss_pred             ECCCCcCcccCCC
Q 047519          739 NLSYNQFEGPIPQ  751 (892)
Q Consensus       739 ~ls~N~l~g~iP~  751 (892)
                      ++++|++++..+.
T Consensus       108 ~L~~N~~~c~c~~  120 (170)
T 3g39_A          108 WLLNNPWDCACSD  120 (170)
T ss_dssp             ECCSSCBCTTBGG
T ss_pred             EeCCCCCCCCchh
Confidence            9999999987763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=6.9e-13  Score=129.16  Aligned_cols=91  Identities=25%  Similarity=0.235  Sum_probs=82.8

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      .+.|+.|+|++|+|++..|..|+++++|+.|+ |++|+|++..+..|.++++|+.|+|++|+|++..+..|..+++|++|
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLY-FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE-CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEE-CCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            35688999999999998899999999999999 99999998777778999999999999999997777679999999999


Q ss_pred             ECCCCcCcccCC
Q 047519          739 NLSYNQFEGPIP  750 (892)
Q Consensus       739 ~ls~N~l~g~iP  750 (892)
                      ++++|++++..+
T Consensus       111 ~L~~N~~~c~~~  122 (174)
T 2r9u_A          111 YLYNNPWDCECR  122 (174)
T ss_dssp             ECCSSCBCTTBG
T ss_pred             EeCCCCcccccc
Confidence            999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=2.3e-15  Score=150.49  Aligned_cols=132  Identities=22%  Similarity=0.211  Sum_probs=87.2

Q ss_pred             hccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCc
Q 047519          561 WLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNY  640 (892)
Q Consensus       561 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~  640 (892)
                      .+..+++|++|++++|.+++ +| .+  ..+++|++|++++|+++ .+|..+ .                          
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~--~~l~~L~~L~l~~n~l~-~l~~~~-~--------------------------   90 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIENLD-A--------------------------   90 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CH--HHHTTCCEEEEEEEEEC-SCSSHH-H--------------------------
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-cc--ccCCCCCEEECCCCCcc-cccchh-h--------------------------
Confidence            56666666666666666655 33 22  56667777777777766 344321 1                          


Q ss_pred             cceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc-hhccCCCCCCeeeCCCC
Q 047519          641 YESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP-SLLRNLTEVESLDLSSN  719 (892)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N  719 (892)
                                       .+++|+.|++++|++++ +| .+..+++|+.|+ +++|++++..+ ..+..+++|+.|++++|
T Consensus        91 -----------------~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~-l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           91 -----------------VADTLEELWISYNQIAS-LS-GIEKLVNLRVLY-MSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             -----------------HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE-ESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             -----------------cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE-CCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence                             15677778888887774 45 577777888887 88888874332 46777788888888888


Q ss_pred             cCCCCCccc----------cCCCCCCCEEECCCCcCc
Q 047519          720 MLVGHIPTQ----------LTSLKYLSVLNLSYNQFE  746 (892)
Q Consensus       720 ~l~~~ip~~----------l~~l~~L~~L~ls~N~l~  746 (892)
                      ++++.+|..          +..+++|+.||  +|+++
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            877665543          67777888776  56554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=6.3e-13  Score=129.96  Aligned_cols=63  Identities=16%  Similarity=0.170  Sum_probs=30.5

Q ss_pred             ccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCc
Q 047519          538 LVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       538 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  605 (892)
                      +..+++|++|++++|+++. +|......++|+.|++++|.+++.  ..+  ..+++|++|++++|+++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc
Confidence            3445555555555555554 232222222555555555555432  222  44555555555555555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=2.4e-11  Score=134.78  Aligned_cols=89  Identities=8%  Similarity=-0.013  Sum_probs=51.3

Q ss_pred             ccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCc
Q 047519          510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIV  589 (892)
Q Consensus       510 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  589 (892)
                      .+..|.++++|+.+++.+ .++.....+|.+|++|+.++|..| ++.+.+.+|.++ +|+.+.+.+|.+....+..+  .
T Consensus       292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~  366 (401)
T 4fdw_A          292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--Y  366 (401)
T ss_dssp             CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--C
T ss_pred             CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--c
Confidence            344566666677777663 355444556666777777777443 555455666666 67777777766544333333  4


Q ss_pred             CCC-CccEEEcCCCC
Q 047519          590 PFP-RFRIIDLSHNE  603 (892)
Q Consensus       590 ~l~-~L~~L~Ls~N~  603 (892)
                      .++ .++.|.+..+.
T Consensus       367 ~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          367 GFPDDITVIRVPAES  381 (401)
T ss_dssp             CSCTTCCEEEECGGG
T ss_pred             CCCCCccEEEeCHHH
Confidence            443 45566555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=4.6e-15  Score=148.33  Aligned_cols=156  Identities=20%  Similarity=0.237  Sum_probs=120.1

Q ss_pred             ccCCCCCCEEEccCCCCCCCCCc------cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCC
Q 047519          514 FVNSCNLTNLNLNGNRLEGPLPL------SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTT  587 (892)
Q Consensus       514 ~~~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  587 (892)
                      +.....++.++++.+.+++.+|.      .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+ 
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-
Confidence            33445666666666666666555      78888899999999998887 56 7888889999999999886 455443 


Q ss_pred             CcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeec
Q 047519          588 IVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDL  667 (892)
Q Consensus       588 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  667 (892)
                       ..+++|++|++++|++++ +| . +.                                           .+++|+.|++
T Consensus        90 -~~~~~L~~L~L~~N~l~~-l~-~-~~-------------------------------------------~l~~L~~L~l  122 (198)
T 1ds9_A           90 -AVADTLEELWISYNQIAS-LS-G-IE-------------------------------------------KLVNLRVLYM  122 (198)
T ss_dssp             -HHHHHCSEEEEEEEECCC-HH-H-HH-------------------------------------------HHHHSSEEEE
T ss_pred             -hcCCcCCEEECcCCcCCc-CC-c-cc-------------------------------------------cCCCCCEEEC
Confidence             556889999999999885 33 2 11                                           2778999999


Q ss_pred             CCCcCCCCCh-hhhcCccccccccccCCCCCCCCcchh----------ccCCCCCCeeeCCCCcCCC
Q 047519          668 SSNKFQGGIP-EVVGKLNLLKGLNNISHNNLTGDIPSL----------LRNLTEVESLDLSSNMLVG  723 (892)
Q Consensus       668 s~N~l~~~~p-~~~~~l~~L~~L~~Ls~N~l~~~ip~~----------l~~l~~L~~L~Ls~N~l~~  723 (892)
                      ++|++++..+ ..+..+++|++|+ +++|++++.+|..          +..+++|+.||  +|.++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~-l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLL-LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEE-ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEE-ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            9999984332 4789999999998 9999998777653          88999999998  777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=6.5e-11  Score=131.26  Aligned_cols=216  Identities=12%  Similarity=0.086  Sum_probs=120.7

Q ss_pred             cCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEE
Q 047519          341 YAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLG  419 (892)
Q Consensus       341 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~  419 (892)
                      |+.+.+.. .++...+.+|.++++|+.+++.+|.++ .++...|. ..+|+.+.+..+   +.......+ .+++|+.++
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT---CCEECTTTTTTCTTCCCEE
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc---hheehhhHhhCCCCCCEEe
Confidence            44444443 333333344444445555555444444 23323333 344555544432   111111112 444555555


Q ss_pred             ccCCCCCCcch-hhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCC-----CCCCCCCCCCCeeecCCC
Q 047519          420 LSACNISEFPD-ILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT-----NIEYFPPTNMTQLNFDSN  493 (892)
Q Consensus       420 L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~l~~~  493 (892)
                      +..+ ++.++. .|.+ .+|+.+.+. +.++......|..+  ++|+.+++.+|.+.     .+.+..|        .+|
T Consensus       233 l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c--~~L~~l~l~~~~~~~~~~~~I~~~aF--------~~c  299 (401)
T 4fdw_A          233 IPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYC--PELAEVTTYGSTFNDDPEAMIHPYCL--------EGC  299 (401)
T ss_dssp             CCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTC--TTCCEEEEESSCCCCCTTCEECTTTT--------TTC
T ss_pred             cCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCC--CCCCEEEeCCccccCCcccEECHHHh--------hCC
Confidence            5442 333332 3333 456666663 33433334445544  66666666655443     2222333        334


Q ss_pred             CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCC-CCCEEE
Q 047519          494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILP-ELQVLI  572 (892)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~  572 (892)
                      .+|+.+++. +.++......|.++.+|+.+.|..+ ++..-+.+|.+| +|+.+++.+|.+....+..|.+++ +++.|.
T Consensus       300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred             ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence            477778777 3466566678888899999999655 665666788899 899999999988877777787775 788898


Q ss_pred             ccCCcC
Q 047519          573 LRSNRF  578 (892)
Q Consensus       573 L~~N~l  578 (892)
                      +..+.+
T Consensus       377 vp~~~~  382 (401)
T 4fdw_A          377 VPAESV  382 (401)
T ss_dssp             ECGGGH
T ss_pred             eCHHHH
Confidence            877754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=2e-12  Score=126.34  Aligned_cols=91  Identities=21%  Similarity=0.157  Sum_probs=51.7

Q ss_pred             cccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcch--hccCCCCCCEEEccCCcCCCCCCCC--CCC
Q 047519          513 KFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGDN--TTI  588 (892)
Q Consensus       513 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~  588 (892)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|+++. +|.  .+..+++|+.|++++|+++. +|..  ..+
T Consensus        59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~  136 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVI  136 (176)
T ss_dssp             CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHH
T ss_pred             ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHH
Confidence            34455566666666666664333334566666666666666644 443  55666666666666666643 2321  002


Q ss_pred             cCCCCccEEEcCCCCCc
Q 047519          589 VPFPRFRIIDLSHNEFT  605 (892)
Q Consensus       589 ~~l~~L~~L~Ls~N~l~  605 (892)
                      ..+++|++||+++|.+.
T Consensus       137 ~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          137 YKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHCTTCSEETTEECCHH
T ss_pred             HHCCccceeCCCcCCHH
Confidence            55677777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.6e-11  Score=118.96  Aligned_cols=110  Identities=17%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      ..+.+++++|.++. +|..+.  ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            34677888887774 555443  688999999999998878888999999999999999998777778889999999999


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (892)
                      +|++++..+..+  ..+++|++|+|++|+++...+
T Consensus        87 ~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHh--cCCCCCCEEEeCCCCCCCCch
Confidence            999987766655  788999999999999986654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.25  E-value=1.2e-10  Score=129.62  Aligned_cols=217  Identities=12%  Similarity=0.127  Sum_probs=96.2

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCC
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPN  414 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~  414 (892)
                      .++.+|+++.+..+ ++.....+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+  - .......+ .+. 
T Consensus        68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l-~~i~~~aF~~~~-  140 (394)
T 4fs7_A           68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--L-KSIGVEAFKGCD-  140 (394)
T ss_dssp             TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--C-CEECTTTTTTCC-
T ss_pred             hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--e-eeecceeeeccc-
Confidence            55566666666432 44344455666666666666544 33 344356666666666555443  1 11111111 221 


Q ss_pred             ccEEEccCCCCCCc-chhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519          415 LFGLGLSACNISEF-PDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN  493 (892)
Q Consensus       415 L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~  493 (892)
                      +....+.. ....+ ...|.++++|+.+.+.++. .......|..+  .+|+.+.+..+ ++.+....+.+        |
T Consensus       141 ~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c--~~L~~i~l~~~-~~~I~~~~F~~--------~  207 (394)
T 4fs7_A          141 FKEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGC--GKLKSIKLPRN-LKIIRDYCFAE--------C  207 (394)
T ss_dssp             CSEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTC--TTCCBCCCCTT-CCEECTTTTTT--------C
T ss_pred             ccccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCC--CCceEEEcCCC-ceEeCchhhcc--------c
Confidence            22222111 11111 1345666666666665443 21223334444  56666655443 22222222222        2


Q ss_pred             CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      ..|+.+.+..+...  +...+....+|+.+.+... ++......+.++..|+.+.+..+.. ......|..+..++.+..
T Consensus       208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEE
T ss_pred             cccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceecc
Confidence            24444444333211  1122233445666655433 2223334455566666666655432 223344555555555555


Q ss_pred             cCC
Q 047519          574 RSN  576 (892)
Q Consensus       574 ~~N  576 (892)
                      ..+
T Consensus       284 ~~~  286 (394)
T 4fs7_A          284 GSV  286 (394)
T ss_dssp             CSS
T ss_pred             Cce
Confidence            443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=4e-11  Score=116.64  Aligned_cols=107  Identities=15%  Similarity=0.113  Sum_probs=87.3

Q ss_pred             cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519          497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN  576 (892)
Q Consensus       497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  576 (892)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56778887775 4555553  68899999999999887888899999999999999998866666788999999999999


Q ss_pred             cCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519          577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL  608 (892)
Q Consensus       577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (892)
                      ++++..+..+  ..+++|++|+|++|.+....
T Consensus        92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence            9987665545  78899999999999988543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.20  E-value=8.9e-10  Score=122.52  Aligned_cols=234  Identities=12%  Similarity=0.066  Sum_probs=123.2

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL  415 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  415 (892)
                      .++++|+.+.+..+. .......|.++++|+.+.+..+ ++ .++...|.++..|+.+.+..+..  . .........+|
T Consensus       159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~--~-i~~~~~~~~~l  232 (394)
T 4fs7_A          159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLY--Y-LGDFALSKTGV  232 (394)
T ss_dssp             TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCC--E-ECTTTTTTCCC
T ss_pred             cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCce--E-eehhhcccCCC
Confidence            445555555554332 2233344555555555555544 22 23334555566666555554411  0 01111134555


Q ss_pred             cEEEccCCCCCCcc-hhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519          416 FGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL  494 (892)
Q Consensus       416 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~  494 (892)
                      +.+.+... ++.+. ..+..+..|+.+.+..+... .....+..+  ..++.+....+.+...   .        +.+|.
T Consensus       233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~--~~l~~~~~~~~~i~~~---~--------F~~~~  297 (394)
T 4fs7_A          233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNC--SGLKKVIYGSVIVPEK---T--------FYGCS  297 (394)
T ss_dssp             CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTC--TTCCEEEECSSEECTT---T--------TTTCT
T ss_pred             ceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccc--cccceeccCceeeccc---c--------ccccc
Confidence            55555432 22222 34556666666666655332 223334444  5666665554332211   1        22333


Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +|+.+.+..+ ++......|.++.+|+.++|.++ ++..-..+|.+|++|+.+++..+ ++.+...+|.++++|+.+++.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            5666666543 44344556777778888888644 55444567788888888888766 665556678888888888886


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEE
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRII  597 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L  597 (892)
                      .+--  .+..  .+.++++|+.+
T Consensus       375 ~~~~--~~~~--~F~~c~~L~~I  393 (394)
T 4fs7_A          375 KRLE--QYRY--DFEDTTKFKWI  393 (394)
T ss_dssp             GGGG--GGGG--GBCTTCEEEEE
T ss_pred             CCCE--Ehhh--eecCCCCCcEE
Confidence            6521  1222  23666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=6.7e-11  Score=129.29  Aligned_cols=86  Identities=21%  Similarity=0.150  Sum_probs=43.2

Q ss_pred             hhheeeecCC-CcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          660 TIFMTIDLSS-NKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       660 ~~L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      ++|+.|+|++ |+|++..|..|+++++|+.|+ |++|+|++.+|..|+++++|+.|||++|+|++..|..|..++ |+.|
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~-l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLT-IVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEE-CCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEE-CCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            3455555553 555544444555555555554 555555554555555555555555555555543333344333 5555


Q ss_pred             ECCCCcCcc
Q 047519          739 NLSYNQFEG  747 (892)
Q Consensus       739 ~ls~N~l~g  747 (892)
                      +|++|++.+
T Consensus       109 ~l~~N~~~c  117 (347)
T 2ifg_A          109 VLSGNPLHC  117 (347)
T ss_dssp             ECCSSCCCC
T ss_pred             EeeCCCccC
Confidence            555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=1.3e-12  Score=143.55  Aligned_cols=87  Identities=17%  Similarity=0.246  Sum_probs=62.8

Q ss_pred             hhheeeecCCCcCCC----CChhhhcCccccccccccCCCCCCCC----cchhccCCCCCCeeeCCCCcCCCC----Ccc
Q 047519          660 TIFMTIDLSSNKFQG----GIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSSNMLVGH----IPT  727 (892)
Q Consensus       660 ~~L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~  727 (892)
                      +.|+.|+|++|.|+.    .++..+..+++|++|+ |++|+|++.    ++..+...++|+.|||++|.|+..    ++.
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~-Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS-LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEE-CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEe-CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            457777777777763    2444556777888887 888888743    356677778889999999988753    334


Q ss_pred             ccCCCCCCCEEECCCCcCcc
Q 047519          728 QLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       728 ~l~~l~~L~~L~ls~N~l~g  747 (892)
                      .+...++|++|||++|++++
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCH
T ss_pred             HHHhCCCCCEEeccCCCCCH
Confidence            45566889999999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.03  E-value=1.2e-11  Score=135.79  Aligned_cols=160  Identities=13%  Similarity=0.035  Sum_probs=91.7

Q ss_pred             CCCCcEEEccCCCCCcCCCcccc-----CCCCCcEEecCccccccceeecc-chhhhhhccCCCCCcCEEEccCCcCCcC
Q 047519          281 LDKRRSITGYVFNFAGGPINWKS-----TLQSTVVLSTTEAEYMAITKAVK-EAIWLQVFVRGRRHYAEPHFSSNQLSGS  354 (892)
Q Consensus       281 l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~~~~n~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n~l~~~  354 (892)
                      ++.|++|++++|.++......+.     ..++|++|+++   +|.++.... .+.      ..+++|++|+|++|.+++.
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls---~n~l~~~~~~~l~------~~L~~L~~L~Ls~n~l~~~  141 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA---SCQLDPAGLRTLL------PVFLRARKLGLQLNSLGPE  141 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT---TCCCCHHHHHHTH------HHHHTEEEEECCSSCCCHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec---CCCCCHHHHHHHH------HHHHhccHhhcCCCCCCHH
Confidence            45788999999888754333322     22678888888   777754322 110      2345678888888877654


Q ss_pred             CCccc-----cCCCCCCEEECcCCcCCCc----cChhhcCCCCCCCEEEcccCCCCCCcc--ccCCC-CCCCccEEEccC
Q 047519          355 IPSSV-----YELENLILLRLPSNRLSGT----TELYDFAKLKNLKWLFVSNNRLSLSTK--LKVNS-SFPNLFGLGLSA  422 (892)
Q Consensus       355 ~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~-~l~~L~~L~L~~  422 (892)
                      ....+     ...++|++|+|++|.++..    ++ ..+..+++|++|+|++|.+...+.  +.... ..++|++|+|++
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            43333     2456778888888777532    22 234566777777777774322111  01111 344566666666


Q ss_pred             CCCCC-----cchhhhCCCCccEEEccCCCCCC
Q 047519          423 CNISE-----FPDILRTLHQLQWFNLSKNRIHG  450 (892)
Q Consensus       423 n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~  450 (892)
                      |.++.     ++..+...++|++|+|++|.|++
T Consensus       221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          221 NGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            66652     23344445566666666666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=1.2e-09  Score=119.13  Aligned_cols=113  Identities=17%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             cEEECCCC-ccCccccccccCCCCCCEEEccC-CCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          497 KVLDMRMN-NFNGKISQKFVNSCNLTNLNLNG-NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       497 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      ..++.+++ .++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677776 6764 666 88888899999986 89987777888999999999999999998888888899999999999


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLD  614 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  614 (892)
                      +|+|++..+..+  ..++ |+.|+|++|.+.......++.
T Consensus        89 ~N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~  125 (347)
T 2ifg_A           89 FNALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQ  125 (347)
T ss_dssp             SSCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHH
T ss_pred             CCccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHH
Confidence            999987655544  4444 999999999998654433333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.94  E-value=6.6e-08  Score=107.32  Aligned_cols=111  Identities=7%  Similarity=-0.066  Sum_probs=61.2

Q ss_pred             cChhhhcCCC-CCcEEEccCCCCCcCCCccccCCCCCcEEecCcccccc---ceeecc--chhhhhhccCCCCCcCEEEc
Q 047519          273 VDSDYIGDLD-KRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMA---ITKAVK--EAIWLQVFVRGRRHYAEPHF  346 (892)
Q Consensus       273 ~p~~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~---l~~~~p--~l~~l~l~~~~l~~L~~L~L  346 (892)
                      |...++.++. .|+.+.+..+ ++..-..+|.++++|+.+.+.   .+.   ++ .+.  .|       .++.+|+.+.+
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~---~n~p~~l~-~Ig~~aF-------~~c~~L~~i~~  121 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQ---DNKPSCVK-KIGRQAF-------MFCSELTDIPI  121 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEG---GGCCCCCC-EECTTTT-------TTCTTCCBCGG
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeec---CCCCCeee-Eechhhc-------hhcccceeecc
Confidence            4443566664 4777777653 444445567777777777776   442   21 222  45       55666666655


Q ss_pred             cCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC
Q 047519          347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       347 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  398 (892)
                      ..+ ++......|..+.+|+.+.+..+. . .+....|..+.+|+.+.+..+
T Consensus       122 ~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          122 LDS-VTEIDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             GTT-CSEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT
T ss_pred             CCc-cceehhhhhhhhccccccccccee-e-eecccceecccccccccccce
Confidence            443 333344455666666666665432 2 233355666666666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.85  E-value=1.7e-07  Score=104.09  Aligned_cols=127  Identities=9%  Similarity=-0.002  Sum_probs=69.0

Q ss_pred             cccCCC-Ccceec--ccceeecChhhhcCCCCCcEEEccCCC---CCcCCCccccCCCCCcEEecCccccccceeecc--
Q 047519          255 VGLLFE-QDDTLG--QSVNGYVDSDYIGDLDKRRSITGYVFN---FAGGPINWKSTLQSTVVLSTTEAEYMAITKAVK--  326 (892)
Q Consensus       255 ~l~~l~-~L~~L~--~~~~~~~p~~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p--  326 (892)
                      +|.+++ .|+.+.  +.++ .|...++.++.+|+.+.+..+.   ++..-..+|..+.+|+.+.+.   .+ +. .++  
T Consensus        58 aF~~~~~~L~sI~iP~svt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~---~~-~~-~I~~~  131 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDTVT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL---DS-VT-EIDSE  131 (394)
T ss_dssp             TTTTCCSCCCEEEECTTCC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG---TT-CS-EECTT
T ss_pred             hccCCCCcCEEEEECCCee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccC---Cc-cc-eehhh
Confidence            444443 356555  3332 2333367777777777776543   332233456666677666654   32 22 222  


Q ss_pred             chhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccC
Q 047519          327 EAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       327 ~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  398 (892)
                      .+       ..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+....|.. .+|+.+.+..+
T Consensus       132 aF-------~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~  192 (394)
T 4gt6_A          132 AF-------HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAK  192 (394)
T ss_dssp             TT-------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTT
T ss_pred             hh-------hhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCc
Confidence            55       66777777777543 33344456667777777777654 32 333344543 45777766554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.62  E-value=3.5e-09  Score=115.07  Aligned_cols=16  Identities=13%  Similarity=0.353  Sum_probs=7.6

Q ss_pred             CCCCCCeeeCCCCcCC
Q 047519          707 NLTEVESLDLSSNMLV  722 (892)
Q Consensus       707 ~l~~L~~L~Ls~N~l~  722 (892)
                      .+++|+.|+|++|.++
T Consensus       305 ~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          305 KIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHTTCSEEECCSBBCC
T ss_pred             cCCcceEEECCCCcCC
Confidence            3444555555555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.59  E-value=1.1e-06  Score=96.75  Aligned_cols=37  Identities=5%  Similarity=0.046  Sum_probs=15.0

Q ss_pred             cccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          537 SLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       537 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      .+..+.+|+.+.+..+ +.......|.++..|+.+.+.
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp  248 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIP  248 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEEC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcC
Confidence            3444444554444332 222222334444444444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=2.1e-08  Score=108.88  Aligned_cols=164  Identities=21%  Similarity=0.249  Sum_probs=106.5

Q ss_pred             ccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhcc--CCCCCCEEEccC--CcCCCCC---
Q 047519          510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLE--ILPELQVLILRS--NRFWGPI---  582 (892)
Q Consensus       510 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~~---  582 (892)
                      +...+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+.......+.  .+|+|+.|+|+.  |...+..   
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3345567788999999887311 2333 33 78899999998888654444443  689999999863  2221111   


Q ss_pred             --CCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhh
Q 047519          583 --GDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILT  660 (892)
Q Consensus       583 --~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  660 (892)
                        ...+....+++|++|+|++|.+++..+..+..       .                                  ..++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-------a----------------------------------~~~~  279 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE-------S----------------------------------DILP  279 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH-------C----------------------------------SSGG
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh-------C----------------------------------ccCC
Confidence              01121135789999999999987433221110       0                                  0167


Q ss_pred             hheeeecCCCcCCCC----ChhhhcCccccccccccCCCCCCCCcchhccC-CCCCCeeeCCCCc
Q 047519          661 IFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNNISHNNLTGDIPSLLRN-LTEVESLDLSSNM  720 (892)
Q Consensus       661 ~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~-l~~L~~L~Ls~N~  720 (892)
                      .|+.|||+.|.+++.    ++..+..+++|+.|+ |++|.|+...-..+.. +  ...+|++.|+
T Consensus       280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~-L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN-MKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE-CCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCEEECCCCCCChHHHHHHHhhcccCCcceEEE-CCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            899999999999864    344456689999998 9999988554444443 2  3557887776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.46  E-value=1.5e-05  Score=87.65  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      .|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+....|.++.+|+.+.+.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            4555555433 33333445555666666666433 332334456666666666666666655555566666666666665


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCC
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHN  602 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  602 (892)
                      .+ ++..-...  |.++.+|+.+.+..+
T Consensus       319 ~~-l~~I~~~a--F~~C~~L~~i~ip~~  343 (379)
T 4h09_A          319 TA-LKTIQVYA--FKNCKALSTISYPKS  343 (379)
T ss_dssp             TT-CCEECTTT--TTTCTTCCCCCCCTT
T ss_pred             cc-ccEEHHHH--hhCCCCCCEEEECCc
Confidence            43 32221222  355666666666443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=2.1e-07  Score=95.76  Aligned_cols=90  Identities=24%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             hhhhee--eecCCCcCC---CCChhhhcCccccccccccCCCCCCC--CcchhccCCCCCCeeeCCCCcCCCCCccccCC
Q 047519          659 LTIFMT--IDLSSNKFQ---GGIPEVVGKLNLLKGLNNISHNNLTG--DIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS  731 (892)
Q Consensus       659 l~~L~~--LdLs~N~l~---~~~p~~~~~l~~L~~L~~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  731 (892)
                      .+.|..  ++++.|+..   +.++....+++.|+.|+ |++|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..
T Consensus       140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~-Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~  216 (267)
T 3rw6_A          140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLN-LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK  216 (267)
T ss_dssp             CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEE-CTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG
T ss_pred             CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEE-CCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh
Confidence            344554  778888543   22222335688999998 99999997  5567788999999999999999865  33444


Q ss_pred             CC--CCCEEECCCCcCcccCCC
Q 047519          732 LK--YLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       732 l~--~L~~L~ls~N~l~g~iP~  751 (892)
                      +.  .|+.|+|++|++++.+|.
T Consensus       217 l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             GTTSCCSEEECTTSTTGGGCSS
T ss_pred             cccCCcceEEccCCcCccccCc
Confidence            44  899999999999988874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.15  E-value=9.4e-07  Score=90.85  Aligned_cols=80  Identities=25%  Similarity=0.322  Sum_probs=66.9

Q ss_pred             HhhhhheeeecCCCcCCC--CChhhhcCccccccccccCCCCCCCCcchhccCCC--CCCeeeCCCCcCCCCCcc-----
Q 047519          657 RILTIFMTIDLSSNKFQG--GIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLT--EVESLDLSSNMLVGHIPT-----  727 (892)
Q Consensus       657 ~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip~-----  727 (892)
                      ..++.|+.|+|++|+|++  .+|..+..+++|+.|+ |++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.     
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~-Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN-LSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEE-CTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEE-CCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            347899999999999997  4567788999999999 999999965  3355555  999999999999987763     


Q ss_pred             --ccCCCCCCCEEE
Q 047519          728 --QLTSLKYLSVLN  739 (892)
Q Consensus       728 --~l~~l~~L~~L~  739 (892)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              367788999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=4.3e-07  Score=88.83  Aligned_cols=118  Identities=8%  Similarity=0.004  Sum_probs=76.9

Q ss_pred             ccCCCCCCeEecCCC-CCCCC---CCCCcCcCCCCCCeEeCCCCCCcc----ccCCCCCcccCCCCceecCCcccCCcch
Q 047519           86 LFFLPHIRKLNLAFN-DFNYS---EISSGFSQLRSLTLLNLSSSNFMG----SIPASIDLINVSRLSTNYLPIFAFSDCF  157 (892)
Q Consensus        86 l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~Ls~n~~~~----~~p~~l~~~~L~~L~~L~Ls~~~~~~~~  157 (892)
                      +...+.|++|+|++| .+...   .+...+...++|++|+|++|.+..    .+...+.  ..+.|++|+|++|.+...-
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--VNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--HCSSCCEEECCSSCCCHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--hCCCcCEEECcCCcCCHHH
Confidence            455677788888877 76542   133455667778888888887753    2333444  5567888888877655443


Q ss_pred             hhhhhcccCCCCCCCEEec--CCccCccccccc-----CCCCCCcccEEEccCCCCcCc
Q 047519          158 QLDVKTTFLHDDLEEEIYM--TQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIA  209 (892)
Q Consensus       158 p~~l~~~~~~l~~L~~L~L--~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~  209 (892)
                      ...+...++..+.|++|+|  ++|.+.......     ...  ++|++|+|++|  .+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n--~~L~~L~L~~n--~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN--TTLLKFGYHFT--QQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC--SSCCEEECCCS--SHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC--CCcCEEeccCC--CCC
Confidence            3334444447888888888  778876654322     445  78899999888  553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.08  E-value=9e-07  Score=86.54  Aligned_cols=124  Identities=10%  Similarity=-0.011  Sum_probs=90.6

Q ss_pred             CCcCcCCCCCCeEeCCCC-CCcc----ccCCCCCcccCCCCceecCCcccCCcchhhhhhcccCCCCCCCEEecCCccCc
Q 047519          108 SSGFSQLRSLTLLNLSSS-NFMG----SIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGF  182 (892)
Q Consensus       108 p~~~~~l~~L~~L~Ls~n-~~~~----~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~~~~~l~~L~~L~L~~~~~~  182 (892)
                      ...+...++|++|+|++| .+..    .+...+.  ..++|++|+|++|.+...-...++..++..++|++|+|++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            445778899999999999 8864    3445566  78899999999987655444444444448899999999999988


Q ss_pred             ccccc----c-CCCCCCcccEEEc--cCCCCcCccCChhHHHHhhhcccccccccccccCCCCCEEEcccCCCC
Q 047519          183 KVAEK----E-NWLQEESFIYLLL--HVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTC  249 (892)
Q Consensus       183 ~~~~~----~-~~l~~~~L~~L~L--s~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L~~L~L~~n~~~  249 (892)
                      +....    . ...  ++|++|+|  ++|  .+.......+.            ..+...+.|++|++++|.+.
T Consensus       107 ~~g~~~l~~~L~~n--~~L~~L~L~~~~N--~i~~~g~~~l~------------~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSN--TSLIELRIDNQSQ--PLGNNVEMEIA------------NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGC--SSCCEEECCCCSS--CCCHHHHHHHH------------HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhC--CCceEEEecCCCC--CCCHHHHHHHH------------HHHHhCCCcCEEeccCCCCC
Confidence            76432    2 455  78999999  888  77654322221            45667789999999998653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.49  E-value=2.5e-05  Score=74.35  Aligned_cols=34  Identities=3%  Similarity=-0.033  Sum_probs=14.3

Q ss_pred             CCCEEEccCCCCCCCCCccccCCCCCcEEEccCC
Q 047519          519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNN  552 (892)
Q Consensus       519 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N  552 (892)
                      .|+.||+++|.++..--..+.+|++|++|+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444443332233344444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.35  E-value=3.3e-05  Score=73.47  Aligned_cols=83  Identities=11%  Similarity=0.015  Sum_probs=65.6

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCC-CCCCCCccccCC----CCCcEEEccCCC-CCCCcchhccCCCCC
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNR-LEGPLPLSLVNC----HHLEVLDVGNNQ-INDNFPNWLEILPEL  568 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L  568 (892)
                      .|+.||++++.++...-..+..+++|++|+|++|. +++.--..+..+    ++|++|+|++|. |++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            79999999999988777778899999999999995 664433445553    479999999984 877555566778888


Q ss_pred             CEEEccCCc
Q 047519          569 QVLILRSNR  577 (892)
Q Consensus       569 ~~L~L~~N~  577 (892)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0032  Score=56.87  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=40.1

Q ss_pred             cccccCCCCCC-CCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcc
Q 047519          688 GLNNISHNNLT-GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  747 (892)
Q Consensus       688 ~L~~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  747 (892)
                      .++ -+++.++ ..+|..+.  ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus        12 ~v~-Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVD-CGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEE-CCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEE-eCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            454 6777775 34554332  357888888888886666677888888888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.45  E-value=0.00093  Score=64.74  Aligned_cols=11  Identities=18%  Similarity=0.190  Sum_probs=5.0

Q ss_pred             CCCccEEEccC
Q 047519          435 LHQLQWFNLSK  445 (892)
Q Consensus       435 l~~L~~L~Ls~  445 (892)
                      -+.|++|+|++
T Consensus        40 n~~L~~L~L~~   50 (197)
T 1pgv_A           40 DTDLKEVNINN   50 (197)
T ss_dssp             CSSCCEEECTT
T ss_pred             CCCccEEECCC
Confidence            34444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.25  E-value=0.0014  Score=63.38  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=26.9

Q ss_pred             CCCCcCEEEccCC-cCCcC----CCccccCCCCCCEEECcCCcCCCc----cChhhcCCCCCCCEEEcccCC
Q 047519          337 GRRHYAEPHFSSN-QLSGS----IPSSVYELENLILLRLPSNRLSGT----TELYDFAKLKNLKWLFVSNNR  399 (892)
Q Consensus       337 ~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~Ls~n~  399 (892)
                      +-+.|++|+|++| .+...    +.+.+..-+.|+.|+|++|.|...    +. ..+...+.|++|+|++|.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA-~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSB
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH-HHHhcCCccCeEecCCCc
Confidence            3344555555543 44321    223334444555555555555421    11 223334455555555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.94  E-value=0.0071  Score=54.60  Aligned_cols=58  Identities=22%  Similarity=0.259  Sum_probs=48.3

Q ss_pred             eeeecCCCcCC-CCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCC
Q 047519          663 MTIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVG  723 (892)
Q Consensus       663 ~~LdLs~N~l~-~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  723 (892)
                      ..+|.+++.++ ..+|..+.  .+|+.|+ |++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~-Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELV-LTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEE-CTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEE-CCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            37899999997 46665443  3688998 99999998778889999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	892
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 96.2 bits (238), Expect = 1e-21
 Identities = 66/384 (17%), Positives = 121/384 (31%), Gaps = 23/384 (5%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L   +   L    ++ T    D   L  +  L      +     +       NL  +  S
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 74

Query: 422 ACNISEFPDI--LRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEY 479
              +++   +  L  L  +   N     I    +             +   +        
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 480 FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLV 539
                 +    D +    +  ++  +F  +++     +   T   L+ +  +      L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 540 NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599
              +LE L   NNQI+D  P    IL  L  L L  N+         T+        +DL
Sbjct: 195 KLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI----GTLASLTNLTDLDL 248

Query: 600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL 659
           ++N+ + + P   L     +  G N    +  +  L +    E      +  DI     L
Sbjct: 249 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE--NQLEDISPISNL 306

Query: 660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSN 719
                + L  N      P  V  L  L+ L   ++N ++    S L NLT +  L    N
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLF-FANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 720 MLVGHIPTQLTSLKYLSVLNLSYN 743
            +    P  L +L  ++ L L+  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 3e-13
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 27/208 (12%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             ++NQ+S   P  +    NL  L L  N+L     +   A L NL  L ++NN++S   
Sbjct: 203 IATNNQISDITPLGILT--NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQIS--- 254

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            L   S    L  L L A  IS    +                      S + +L     
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL----- 309

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
            YL L  N +++I   P +++T+L        + L    N  +   S    N  N+  L+
Sbjct: 310 TYLTLYFNNISDIS--PVSSLTKL--------QRLFFANNKVSDVSS--LANLTNINWLS 357

Query: 525 LNGNRLEGPLPLSLVNCHHLEVLDVGNN 552
              N++    PL+  N   +  L + + 
Sbjct: 358 AGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 55/350 (15%), Positives = 110/350 (31%), Gaps = 67/350 (19%)

Query: 491 DSNLTHKV-LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDV 549
           D+ L  K+   +   N    +SQ  ++   +T L  +   ++    +     ++L  ++ 
Sbjct: 18  DTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGIKSIDGVE--YLNNLTQINF 73

Query: 550 GNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTI---------------VPFPRF 594
            NNQ+ D  P  L+ L +L  +++ +N+                           P    
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654
             ++        +     L    ++   +  +   D     N +      I + K  DI 
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 655 IERILTIFMTIDLSSNKFQGGIPEVVGK--------LNLLKGLNNI-----------SHN 695
           +   LT   ++  ++N+     P  +           N LK +  +           ++N
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 251

Query: 696 NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTS--------------------LKYL 735
            ++   P  L  LT++  L L +N +    P    +                    LK L
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 736 SVLNLSYNQFEGPIPQGS----QFNTFRNDSYVGNSGLCGFPLLESCNID 781
           + L L +N      P  S    Q   F N+     S L     +   +  
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAG 359

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 58/365 (15%), Positives = 117/365 (32%), Gaps = 31/365 (8%)

Query: 89  LPHIRKLNLAFNDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYL 148
           L  +  L          +   G   L +LT +N S++      P    L N+++L    +
Sbjct: 43  LDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILM 95

Query: 149 PIFAFSDCFQLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEI 208
                +D   L   T      L             +          + I  +  +  +  
Sbjct: 96  NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL-- 153

Query: 209 ASKSKDEIEKLKTQLNQEFEMKDLGEAKKILGMEICRNRTCGKTMDVGLLFEQDDTLGQS 268
                    +  +  NQ  ++K L     +  ++I  N+    ++   L     ++L  +
Sbjct: 154 ------TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL--TNLESLIAT 205

Query: 269 VNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTE-------AEYMAI 321
            N   D   +G L     ++               T  + + L+  +       +    +
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 265

Query: 322 TKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTEL 381
           T+    A  +          A  +   N+      S +  L+NL  L L  N +S  +  
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP- 324

Query: 382 YDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWF 441
              + L  L+ LF +NN++S  + L   ++  N+  L      IS+    L  L ++   
Sbjct: 325 --VSSLTKLQRLFFANNKVSDVSSL---ANLTNINWLSAGHNQISDLTP-LANLTRITQL 378

Query: 442 NLSKN 446
            L+  
Sbjct: 379 GLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-15
 Identities = 62/308 (20%), Positives = 89/308 (28%), Gaps = 53/308 (17%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           LDLS   L      P +    L     L    +   +NN  G I         L  L + 
Sbjct: 55  LDLSGLNLPKPYPIPSS----LANLPYLNFLYI-GGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
              + G +P  L     L  LD   N ++   P  +  LP L  +    NR  G I D+ 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIIL 646
                                   G        M  + N +         + N     + 
Sbjct: 170 ------------------------GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205

Query: 647 TIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLR 706
                        +   T  +   K           L+      ++ +N +         
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-------- 257

Query: 707 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGN 766
                           G +P  LT LK+L  LN+S+N   G IPQG     F   +Y  N
Sbjct: 258 ----------------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

Query: 767 SGLCGFPL 774
             LCG PL
Sbjct: 302 KCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.7 bits (161), Expect = 3e-12
 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 5   LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCC--SWDGVTCD-- 60
           LC+     ALLQ K+                  +   + SW    DCC  +W GV CD  
Sbjct: 2   LCNPQDKQALLQIKKDLG---------------NPTTLSSWLPTTDCCNRTWLGVLCDTD 46

Query: 61  TVAGHVIGLDLSCSWLHGNIPSNSSLFFLPHIRKLNLAFNDFNYSEISSGFSQLRSLTLL 120
           T    V  LDLS   L    P  SSL  LP++  L +   +     I    ++L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 121 NLSSSNFM 128
            ++ +N  
Sbjct: 107 YITHTNVS 114

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 9e-11
 Identities = 47/249 (18%), Positives = 68/249 (27%), Gaps = 16/249 (6%)

Query: 345 HFSSNQLSG--SIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSL 402
             S   L     IPSS+  L  L  L +              AKL  L +L++++  +S 
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 403 STKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGIT 462
           +    ++     +             P  + +L  L       NRI G I          
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

Query: 463 ALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV-------------LDMRMNNFNGK 509
                   N     I              S    +                    N    
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 510 ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQ 569
              K   S NL  L+L  NR+ G LP  L     L  L+V  N +    P     L    
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD 294

Query: 570 VLILRSNRF 578
           V    +N+ 
Sbjct: 295 VSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 330 WLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKN 389
           +    V   ++       +N++ G++P  + +L+ L  L +  N L G  E+     L+ 
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQR 292

Query: 390 LKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSAC 423
                 +NN                L G  L AC
Sbjct: 293 FDVSAYANN--------------KCLCGSPLPAC 312

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 50/259 (19%), Positives = 83/259 (32%), Gaps = 34/259 (13%)

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
            C+L  +  +   LE  +P  L       +LD+ NN+I +      + L  L  LIL +N
Sbjct: 9   QCHLRVVQCSDLGLEK-VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLN 636
           +            P  +   + LS N+    LP       + +    N            
Sbjct: 66  KISKISPG--AFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENE----------- 111

Query: 637 SSNYYESIILTIKGIDIQIERILTIFMTIDLSS--NKFQGGIPEVVGKLNLLKGLNNISH 694
                      I  +   +   L   + ++L +   K  G        +  L     I+ 
Sbjct: 112 -----------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIAD 159

Query: 695 NNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQ 754
            N+T     L  +LTE   L L  N +       L  L  L+ L LS+N           
Sbjct: 160 TNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 755 FNTFRNDSYVGNSGLCGFP 773
                 + ++ N+ L   P
Sbjct: 217 NTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 54/264 (20%), Positives = 96/264 (36%), Gaps = 21/264 (7%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
           S   L   +P  +    +  LL L +N+++   +  DF  LKNL  L + NN++S     
Sbjct: 18  SDLGLE-KVPKDLPP--DTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKIS-KISP 72

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
              +    L  L LS   + E P+ +    Q       +N I     S    L    +  
Sbjct: 73  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV--HENEITKVRKSVFNGLNQMIVVE 130

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           L  +    + IE      M +L++       +  +                 +LT L+L+
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-----------SLTELHLD 179

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNT 586
           GN++      SL   ++L  L +  N I+      L   P L+ L L +N+     G   
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 587 TIVPFPRFRIIDLSHNEFTGVLPT 610
                   +++ L +N  + +   
Sbjct: 240 D---HKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 55/307 (17%), Positives = 95/307 (30%), Gaps = 42/307 (13%)

Query: 462 TALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLT 521
                LDL NN +T I+     N+  L          L +  N  +      F     L 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLE 82

Query: 522 NLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 581
            L L+ N+L+    L       L+ L V  N+I     +    L ++ V+ L +N     
Sbjct: 83  RLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 582 IGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYY 641
             +N       +   I ++    T  +P G   +   +    N                 
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNK---------------- 182

Query: 642 ESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDI 701
                 I  +D    + L     + LS N         +     L+ L+   +NN    +
Sbjct: 183 ------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--NNNKLVKV 234

Query: 702 PSLLRNLTEVESLDLSSNML------VGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQF 755
           P  L +   ++ + L +N +          P   T     S ++L  N  +    Q S F
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

Query: 756 NTFRNDS 762
                 +
Sbjct: 295 RCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 45/305 (14%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
           +  S+  L  +    P +             +LD++ N         F N  NL  L L 
Sbjct: 15  VQCSDLGLEKVPKDLPPDTA-----------LLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQI---------------------NDNFPNWLEIL 565
            N++    P +      LE L +  NQ+                          +    L
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Query: 566 PELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN 625
            ++ V+ L +N       +N       +   I ++    T  +P G   +   +    N 
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNK 182

Query: 626 --SVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKL 683
              V+   +  LN+         +I  +D            + L++NK    +P  +   
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH 241

Query: 684 NLLKGLNNISHNNLTG------DIPSLLRNLTEVESLDLSSNMLVGH--IPTQLTSLKYL 735
             ++ +  + +NN++         P           + L SN +      P+    +   
Sbjct: 242 KYIQVV-YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 736 SVLNL 740
           + + L
Sbjct: 301 AAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 9/144 (6%)

Query: 344 PHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLS 403
              +   ++ +IP  +    +L  L L  N+++          L NL  L +S N +S +
Sbjct: 155 IRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSIS-A 209

Query: 404 TKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGI-- 461
                 ++ P+L  L L+   + + P  L     +Q   L  N I    S+     G   
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 462 --TALYYLDLSNNFLTNIEYFPPT 483
              +   + L +N +   E  P T
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 19/201 (9%), Positives = 58/201 (28%), Gaps = 34/201 (16%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
             +  + SG    +   ++ L  +R+    ++   +        +L  L +  N+++   
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGNKITKVD 187

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
              +                 +     L     L+  +L+ N++               +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV---PGGLADHKYI 244

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLN 524
             + L NN ++ I      +     +++                          + + ++
Sbjct: 245 QVVYLHNNNISAI---GSNDFCPPGYNTKKA-----------------------SYSGVS 278

Query: 525 LNGNRLE-GPLPLSLVNCHHL 544
           L  N ++   +  S   C ++
Sbjct: 279 LFSNPVQYWEIQPSTFRCVYV 299

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.5 bits (142), Expect = 8e-10
 Identities = 55/352 (15%), Positives = 109/352 (30%), Gaps = 36/352 (10%)

Query: 388 KNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNR 447
           +    L ++N  LS      +    P+L  L  S  +++E P++      L+   +  N 
Sbjct: 38  RQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN 89

Query: 448 IHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN 507
           +               L YL +SNN L  +     ++  ++    N + K L     +  
Sbjct: 90  LKALSDLPPL------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 508 GKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPE 567
              +            NL           S +       L + +    +N    L  L  
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 568 LQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSV 627
           L  L                        + D    +   +  +    +    +    + +
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262

Query: 628 EVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 687
             +      SSN   S+             +      +++S+NK    +P +  +L  L 
Sbjct: 263 PPNLYYLNASSNEIRSLC-----------DLPPSLEELNVSNNKLI-ELPALPPRLERL- 309

Query: 688 GLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 739
                S N+L  ++P L +NL +   L +  N L    P    S++ L + +
Sbjct: 310 ---IASFNHLA-EVPELPQNLKQ---LHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 382 YDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWF 441
                  +L+ L VSNN+L      ++ +  P L  L  S  +++E P++ + L QL   
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHLAEVPELPQNLKQL--- 329

Query: 442 NLSKNRI 448
           ++  N +
Sbjct: 330 HVEYNPL 336

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 38/222 (17%), Positives = 69/222 (31%), Gaps = 23/222 (10%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L N I +    + ++ T      A L  +  L      +   T ++      NL GL L 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              I++   +      L      +   +   +        +       S           
Sbjct: 72  DNQITDLAPL----KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQK---------FVNSCNLTNLNLNGNRLEG 532
            +N+  L  D N    +  +        +S             N   LT L  + N++  
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 533 PLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR 574
             PL+  +  +L  + + NNQI+D  P  L     L ++ L 
Sbjct: 188 ISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 31/209 (14%), Positives = 72/209 (34%), Gaps = 9/209 (4%)

Query: 345 HFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLST 404
               + ++ ++  +  +L+ +  L      +   T +     L NL  L + +N+++   
Sbjct: 25  AAGKSNVTDTVTQA--DLDGITTLSAFGTGV---TTIEGVQYLNNLIGLELKDNQITDLA 79

Query: 405 KLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITAL 464
            LK  +    L   G    N+S    +              +       S +  L +   
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIS--QKFVNSCNLTN 522
              ++S         +      Q++  + L +      +   + KIS      +  NL  
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIE 199

Query: 523 LNLNGNRLEGPLPLSLVNCHHLEVLDVGN 551
           ++L  N++    PL+  N  +L ++ + N
Sbjct: 200 VHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 482 PTNMTQLNFDSNLTHKV-LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVN 540
           PT +  +  D  L + + +    +N    ++Q  ++   +T L+  G  +     +    
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTIEGVQ--Y 61

Query: 541 CHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLS 600
            ++L  L++ +NQI D  P           L     +    I    +I            
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 601 HNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILT 660
                G+     L      +   +    +  +  L+  N   S +       +     LT
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLT 176

Query: 661 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLS 717
                    NK     P  +  L  L  ++ + +N ++   P  L N + +  + L+
Sbjct: 177 TLKA---DDNKISDISP--LASLPNLIEVH-LKNNQISDVSP--LANTSNLFIVTLT 225

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 5e-08
 Identities = 39/250 (15%), Positives = 71/250 (28%), Gaps = 28/250 (11%)

Query: 346 FSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTK 405
            +   L   +   +     +I  R P + +     L +      ++ + +SN+ + +ST 
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 406 LKVNSSFPNLFGLGLSACNIS-EFPDILRTLHQLQWFNLSK------------------- 445
             + S    L  L L    +S    + L     L   NLS                    
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 446 ---NRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMR 502
              N       +        A     ++   L+        +              LD+ 
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 503 MN-NFNGKISQKFVNSCNLTNLNLNG-NRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPN 560
            +        Q+F     L +L+L+    +     L L     L+ L V     +     
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 561 WLEILPELQV 570
             E LP LQ+
Sbjct: 244 LKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 26/284 (9%)

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKISQKFVNSCNLTNLNL 525
           LDL+   L       P    +L     L+  V+  R   +F  +   +  +   + +++L
Sbjct: 5   LDLTGKNL------HPDVTGRL-----LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL 53

Query: 526 NGNRLEG-PLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGD 584
           + + +E   L   L  C  L+ L +   +++D   N L     L  L L     +     
Sbjct: 54  SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 585 NTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESI 644
            T +    R   ++LS                 +      N          +  +     
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 645 ILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSL 704
              +  +D+               S   +    +   +LN L+ L+     ++  +    
Sbjct: 174 CPNLVHLDLSD-------------SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 705 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 748
           L  +  +++L +   +  G +     +L +L +    +     P
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 44/328 (13%), Positives = 80/328 (24%), Gaps = 64/328 (19%)

Query: 421 SACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYF 480
               +   P  +      Q   L  NRI    ++                N  +  +   
Sbjct: 19  PQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRAC----------RNLTILWLHSN 66

Query: 481 PPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-SQKFVNSCNLTNLNLNGNRLEGPLPLSLV 539
               +    F      + LD+  N     +    F     L  L+L+   L+   P    
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 540 NCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL 599
               L+ L + +N +     +    L  L  L L  NR                   + L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLL 184

Query: 600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL 659
             N    V P      F+ +       +  + ++ L +        L             
Sbjct: 185 HQNRVAHVHP----HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ------------ 228

Query: 660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSN 719
                + L+ N +                               L   L +      SS+
Sbjct: 229 ----YLRLNDNPWVCDC-----------------------RARPLWAWLQK---FRGSSS 258

Query: 720 MLVGHIPTQLTSLKYLSVLNLSYNQFEG 747
            +   +P     L    +  L+ N  +G
Sbjct: 259 EVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 41/289 (14%), Positives = 78/289 (26%), Gaps = 37/289 (12%)

Query: 412 FPNLFGLGLSACNISEFP-DILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLS 470
                 + L    IS  P    R    L    L  N +    ++    L +     L   
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-D 89

Query: 471 NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRL 530
           N  L +++      + +L          L +            F     L  L L  N L
Sbjct: 90  NAQLRSVDPATFHGLGRL--------HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 531 EGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVP 590
           +     +  +  +L  L +  N+I+         L  L  L+L  NR           + 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 591 FPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKG 650
                 +  ++           L   + +   +N         P                
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN---------PWVC------------- 239

Query: 651 IDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTG 699
            D +   +         SS++    +P+ +   +L      ++ N+L G
Sbjct: 240 -DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK----RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 33/237 (13%), Positives = 63/237 (26%), Gaps = 8/237 (3%)

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSH 601
              + + +  N+I+            L +L L SN          T +       +    
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS--D 89

Query: 602 NEFTGVLPTGYLDNFKAMM-----HGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIE 656
           N     +          +            +       L +  Y       ++ +     
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 657 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDL 716
           R L     + L  N+           L+ L     +  N +    P   R+L  + +L L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLD-RLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 717 SSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773
            +N L       L  L+ L  L L+ N +         +   +      +   C  P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 25/196 (12%), Positives = 56/196 (28%), Gaps = 15/196 (7%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
               I   L    ++      +   L ++  +  +N+ +     +      PN+  L L+
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQGI---QYLPNVTKLFLN 76

Query: 422 ACNI------SEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLT 475
              +      +   ++              +    +    +            L +    
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 476 NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLP 535
              Y     +T +   S LT        +N    I         L NL L+ N +     
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195

Query: 536 LSLVNCHHLEVLDVGN 551
           L+     +L+VL++ +
Sbjct: 196 LA--GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 9/211 (4%)

Query: 370 LPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFP 429
           L S  ++  T +               N +    T     +   ++  +  +  +I    
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 62

Query: 430 DILRTLHQLQWFNLSKNRIHGRI-----SSWMWDLGITALYYLDLSNNFLTNIEYFPPTN 484
            I + L  +    L+ N++          +  W            S   L  ++     +
Sbjct: 63  GI-QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH 121

Query: 485 MTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHL 544
               + +  +    L+      N       ++     +     +     +   L     L
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKL 180

Query: 545 EVLDVGNNQINDNFPNWLEILPELQVLILRS 575
           + L +  N I+D     L  L  L VL L S
Sbjct: 181 QNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 34/226 (15%), Positives = 63/226 (27%), Gaps = 40/226 (17%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
                NL    +   +  +    + ++ +   N+ I       ++ LP +  L L  N+ 
Sbjct: 25  ETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                      P    + +     +   V     L + K +   +     +  +  L   
Sbjct: 81  TDIK-------PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
              ES+ L    I           +      +     I                      
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-------------------- 173

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 744
                 L  LT++++L LS N +       L  LK L VL L  +Q
Sbjct: 174 ------LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF-SQ 210

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 15/122 (12%)

Query: 466 YLDLSNNFLTNIEYFPP-TNMTQLNFDSNL----------THKVLDMRMNNFNGKISQKF 514
            L L++  LT + +      +T L+   N              +  ++ ++   +     
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 515 VNSCNLTNLNLNGNRLEG-PLPLSLVNCHHLEVLDVGNNQIN--DNFPNWL-EILPELQV 570
            N   L  L L  NRL+       LV+C  L +L++  N +   +     L E+LP +  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 571 LI 572
           ++
Sbjct: 122 IL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 368 LRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE 427
           L L    L   T L    +L  +  L +S+NRL       +  +   L  L +   + + 
Sbjct: 3   LHLAHKDL---TVLCHLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNA 54

Query: 428 FPDIL--RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPP 482
             ++     L +LQ   L  NR+    +          L  L+L  N L   E    
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEEGIQE 110

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 595 RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ 654
           R++ L+H + T +     L      +  ++N +                        ++ 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTH-LDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 655 IERILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNNISHNNLTGD---IPSLLRNLTE 710
               L     + L +N+ Q     + +     L  L N+  N+L  +      L   L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL-NLQGNSLCQEEGIQERLAEMLPS 118

Query: 711 VESL 714
           V S+
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND 556
           +VL +   +    +         +T+L+L+ NRL    P +L     LEVL   +N + +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 557 NFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV 607
                       Q L+L +NR          +V  PR  +++L  N     
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 35/227 (15%), Positives = 61/227 (26%), Gaps = 51/227 (22%)

Query: 519 NLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF 578
           + T L+L+ N L      +L+    L  L++   ++     +    LP L  L L  N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL 89

Query: 579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSS 638
                   T+       +              G  +  +  + GN               
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT----------- 138

Query: 639 NYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLT 698
                                                +P  +          ++++NNLT
Sbjct: 139 -------------------------------------LPPGLLTPTPKLEKLSLANNNLT 161

Query: 699 GDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 745
                LL  L  +++L L  N L   IP        L    L  N +
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 37/222 (16%), Positives = 63/222 (28%), Gaps = 23/222 (10%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
               L+ ++P  +   ++  +L L  N L   +          L  L +        TKL
Sbjct: 18  DKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAE---LTKL 70

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
           +V+ + P L  L LS   +            L     +   +     S+     +     
Sbjct: 71  QVDGTLPVLGTLDLSHNQL----------QSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
             L       ++      +           + L +  NN     +       NL  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDN-----FPNWLE 563
            N L   +P      H L    +  N    N     F  WL+
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 384 FAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNL 443
            +K  +     +    L     L   +    L      +   +    I   + +L   NL
Sbjct: 16  MSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN---RRSSMAATLRIIEENIPELLSLNL 72

Query: 444 SKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM 503
           S NR++              L  L+LS N L +          +L+    L  + L +  
Sbjct: 73  SNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--------ELDKIKGLKLEELWLDG 124

Query: 504 NNFNGKISQKFVNSCNLTNL-----NLNGNRLEGPL 534
           N+ +     +      +         L+G+ L  P+
Sbjct: 125 NSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPI 160

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 26/163 (15%)

Query: 420 LSACNISEFPDILRTLH--QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNI 477
           L    + +   I+   +    Q  +L   R    + +            L+  ++    +
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA------QNIDVVLNRRSSMAATL 57

Query: 478 EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK--ISQKFVNSCNLTNLNLNGNRLEGPLP 535
                 N+ +L          L++  N       +S     + NL  LNL+GN L+    
Sbjct: 58  R-IIEENIPEL--------LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 536 LSLVNCHHLEVLDVGNNQINDNFPNW-------LEILPELQVL 571
           L  +    LE L +  N ++D F +         E  P+L  L
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 509 KISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPEL 568
           ++        + +   L+   L       LV  +   VL+  ++          E +PEL
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 569 QVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFT 605
             L L +NR +     ++ +   P  +I++LS NE  
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 497 KVLDMRMNNFNGK----ISQKFVNSCNLTNLNLNGNRLEGPLPLSLV-----NCHHLEVL 547
           +VL +   + +      ++   + + +L  L+L+ N L     L LV         LE L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 548 DVGNNQINDNFPNWLEIL----PELQVL 571
            + +   ++   + L+ L    P L+V+
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 8e-05
 Identities = 47/443 (10%), Positives = 107/443 (24%), Gaps = 42/443 (9%)

Query: 345 HFSSNQLSGS-IPSSVYELENLILLRLPSNRLS--GTTELYD-FAKLKNLKWLFVSNNRL 400
                +LS +     +  L+   ++RL    L+     ++         L  L + +N L
Sbjct: 8   DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 401 S------LSTKLKVNSSFPNLFGLGLSACNI--------------SEFPDILRTLHQLQW 440
                  +   L+  S    +  L L  C +                    L     L  
Sbjct: 68  GDVGVHCVLQGLQTPS--CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125

Query: 441 FNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLD 500
               +    G +        +   Y    + +              +    SN       
Sbjct: 126 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 185

Query: 501 MRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPN 560
           +R+     K S   + +  L +  +  +       +        E+    N   +     
Sbjct: 186 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 245

Query: 561 WLEILPELQV---LILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFK 617
               L         +          G             +         +   G     +
Sbjct: 246 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 305

Query: 618 AMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP 677
            ++        +   +   ++         +      +E  ++     D    +   G+ 
Sbjct: 306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 365

Query: 678 EVVGKLNLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSSNMLVGHIPTQLTS-- 731
           +    L +L     ++  +++      + + L     +  LDLS+N L      QL    
Sbjct: 366 QPGSVLRVL----WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 732 ---LKYLSVLNLSYNQFEGPIPQ 751
                 L  L L    +   +  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-04
 Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 11/127 (8%)

Query: 664 TIDLSSNKFQ-GGIPEVVGKLNLLKGLNNISHNNLTGD----IPSLLRNLTEVESLDLSS 718
           ++D+   +       E++  L   + +  +    LT      I S LR    +  L+L S
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVR-LDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 719 NMLVGHIPTQLTSL-----KYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFP 773
           N L       +          +  L+L      G              +           
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124

Query: 774 LLESCNI 780
                 +
Sbjct: 125 GDAGLQL 131

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 497 KVLDMRMNNFNGKISQKFVNSC-NLTNLNLNGNRLEG----PLPLSLVNCHHLEVLDVGN 551
           + LD++    +     + +        + L+   L       +  +L     L  L++ +
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 552 NQINDNFPNWL-----EILPELQVLILRSNRFW 579
           N++ D   + +         ++Q L L++    
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 18/139 (12%), Positives = 41/139 (29%), Gaps = 8/139 (5%)

Query: 389 NLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISE-----FPDILRTLHQLQWFNL 443
           +++ L +    LS +   ++         + L  C ++E         LR    L   NL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 444 SKNRIHGRISSWMWDL---GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLD 500
             N +       +          +  L L N  LT       ++  +        H   +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 501 MRMNNFNGKISQKFVNSCN 519
           +  +     + +  ++   
Sbjct: 123 LLGDAGLQLLCEGLLDPQC 141

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 517 SCNLTNLNLNGNRL-EGPLPLSLVNCHHLEVLDVGNNQIND----NFPNWLEILPELQVL 571
           S ++ +L++    L +      L      +V+ + +  + +    +  + L + P L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 572 ILRSNRF 578
            LRSN  
Sbjct: 61  NLRSNEL 67

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 9/117 (7%)

Query: 511 SQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQV 570
           + ++ N+     L+L G ++   +          + +D  +N+I     +   +L  L+ 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 571 LILRSNRFWGPIGDNTTIVPFP------RFRIIDLSHNEFTGVLPTGYLDNFKAMMH 621
           L++ +NR           +P           +++L   +    L +           
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 124

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 691 NISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 750
           ++    +   I +L   L + +++D S N +          L+ L  L ++ N+      
Sbjct: 24  DLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIGE 80

Query: 751 QGSQFNTFRNDSYVGNSGLCGFPLLESC 778
              Q      +  + N+ L     L+  
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPL 108

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 8/233 (3%)

Query: 517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN 576
            C+        +++   +P  L    +   L     ++            +L+ + +  N
Sbjct: 7   HCSNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNN----SVEVDYM 632
                I  +          I     N    + P  + +         +N     +   + 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 633 TPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNI 692
                    +           +   +   F ++ L  NK                   N+
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 693 SHNNLTGDIP-SLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 744
           S NN   ++P  +    +    LD+S   +       L +LK L   +    +
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 10/231 (4%)

Query: 347 SSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKL 406
             ++++  IPS +    N I LR    +L    +   F+   +L+ + +S N +    + 
Sbjct: 16  QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEA 71

Query: 407 KVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYY 466
            V S+ P L           E  + L  ++   + NL   +     ++ +  L      +
Sbjct: 72  DVFSNLPKLH------EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 467 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLN 526
                           T         +    +L +  N      +  F  +        +
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 527 GNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNR 577
            N LE              +LD+   +I+      LE L +L+     + +
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 37/350 (10%), Positives = 89/350 (25%), Gaps = 37/350 (10%)

Query: 399 RLSLSTK-LKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMW 457
           R S+  K LK+++         ++  +      +L     ++   LS N I    + W+ 
Sbjct: 2   RFSIEGKSLKLDA---------ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS 52

Query: 458 DL--GITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFV 515
           +       L   + S+ F   ++   P  +  L   + L    L     + N        
Sbjct: 53  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL-LQALLKCPKLHTVRLSDNAFGPTAQE 111

Query: 516 NSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS 575
              +  + +     L     L            +             +  P L+ +I   
Sbjct: 112 PLIDFLSKHTPLEHL----YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 167

Query: 576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPL 635
           NR                  +  +   +             + + +              
Sbjct: 168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY---------CQELK 218

Query: 636 NSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLN---- 690
                  +             +       + L+       G   VV   + L+ +     
Sbjct: 219 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 278

Query: 691 NISHNNLTGDIPSLL-----RNLTEVESLDLSSNMLVGHIPTQLTSLKYL 735
            + +N +  D    L       + ++  L+L+ N         +  ++ +
Sbjct: 279 RLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV 327

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 27/210 (12%)

Query: 362 LENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLS 421
           L   +   L    ++ T    D   L  +  L      +     +       NL  +  S
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI---KSIDGVEYLNNLTQINFS 70

Query: 422 ACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFP 481
              +++   +      +     +         + +            L+       +  P
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-------NLTGLTLFNNQITDIDP 123

Query: 482 PTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNC 541
             N+T LN     ++ + D+   +    + Q   +S  +T+L              L N 
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK------------PLANL 171

Query: 542 HHLEVLDVGNNQINDNFPNWLEILPELQVL 571
             LE LD+ +N+++D   + L  L  L+ L
Sbjct: 172 TTLERLDISSNKVSD--ISVLAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	892
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.32

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.8e-39  Score=349.72  Aligned_cols=292  Identities=23%  Similarity=0.326  Sum_probs=211.3

Q ss_pred             CCCHHHHHHHHHhhhcCccCCCCCCCccchhcccCCcCCCCCCCCCCcc--ccceEecCCC--CeEEEEECCCCCCCCC-
Q 047519            5 LCSHDQSSALLQFKQLFSFEQHSSSDCDEVYQQSRPKMMSWKEDADCCS--WDGVTCDTVA--GHVIGLDLSCSWLHGN-   79 (892)
Q Consensus         5 ~c~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~g~-   79 (892)
                      .|+++||+||++||+++.++               ..+++|..++|||.  |+||+|+..+  +||++|||++++++|. 
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~---------------~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~   66 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP---------------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC---------------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE
T ss_pred             CCCHHHHHHHHHHHHHCCCC---------------CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCC
Confidence            59999999999999999765               27999998899994  9999998753  4899999999999884 


Q ss_pred             -CCCCCCccCCCCCCeEecCC-CCCCCCCCCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcch
Q 047519           80 -IPSNSSLFFLPHIRKLNLAF-NDFNYSEISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCF  157 (892)
Q Consensus        80 -~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~  157 (892)
                       +|+  +++++++|++|||++ |.+.|. +|+.|+++++|++|+|++|++.+..|..+.  .+.+|++++++.+...+.+
T Consensus        67 ~lp~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~--~~~~L~~l~l~~N~~~~~~  141 (313)
T d1ogqa_          67 PIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTL  141 (313)
T ss_dssp             ECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGG--GCTTCCEEECCSSEEESCC
T ss_pred             CCCh--HHhcCccccccccccccccccc-cccccccccccchhhhcccccccccccccc--chhhhcccccccccccccC
Confidence             555  788888888888876 677776 888888888888888888888776666666  5555555555444434444


Q ss_pred             hhhhhcccCCCCCCCEEecCCccCcccccccCCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCC
Q 047519          158 QLDVKTTFLHDDLEEEIYMTQLDGFKVAEKENWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKK  237 (892)
Q Consensus       158 p~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~  237 (892)
                      |..+.    ++                         ++|+++++++|  .+.+.+|                ..+..+..
T Consensus       142 p~~l~----~l-------------------------~~L~~l~l~~n--~l~~~ip----------------~~~~~l~~  174 (313)
T d1ogqa_         142 PPSIS----SL-------------------------PNLVGITFDGN--RISGAIP----------------DSYGSFSK  174 (313)
T ss_dssp             CGGGG----GC-------------------------TTCCEEECCSS--CCEEECC----------------GGGGCCCT
T ss_pred             chhhc----cC-------------------------cccceeecccc--ccccccc----------------cccccccc
Confidence            44444    33                         44444444444  4444444                34444434


Q ss_pred             C-CEEEcccCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCcc
Q 047519          238 I-LGMEICRNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEA  316 (892)
Q Consensus       238 L-~~L~L~~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~  316 (892)
                      + +.+++++|                     .+.+..|. .+..+..+ .++++.+...+.+|..++.+++++.++++  
T Consensus       175 l~~~l~~~~n---------------------~l~~~~~~-~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~--  229 (313)
T d1ogqa_         175 LFTSMTISRN---------------------RLTGKIPP-TFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLA--  229 (313)
T ss_dssp             TCCEEECCSS---------------------EEEEECCG-GGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECC--
T ss_pred             cccccccccc---------------------cccccccc-cccccccc-ccccccccccccccccccccccccccccc--
Confidence            3 44555554                     34444444 55555443 57777777777777777788888888888  


Q ss_pred             ccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcc
Q 047519          317 EYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVS  396 (892)
Q Consensus       317 ~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls  396 (892)
                       +|.+.+.+|.+       ..+++|+.|++++|+++|.+|.+|+++++|++|+|++|+++|.+|  .+.++++|+.++++
T Consensus       230 -~~~l~~~~~~~-------~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP--~~~~L~~L~~l~l~  299 (313)
T d1ogqa_         230 -KNSLAFDLGKV-------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYA  299 (313)
T ss_dssp             -SSEECCBGGGC-------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGTC
T ss_pred             -ccccccccccc-------ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC--CcccCCCCCHHHhC
Confidence             88777777777       777888888888888888888888888888888888888887777  35677788888888


Q ss_pred             cC
Q 047519          397 NN  398 (892)
Q Consensus       397 ~n  398 (892)
                      +|
T Consensus       300 ~N  301 (313)
T d1ogqa_         300 NN  301 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            87

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=1e-30  Score=280.72  Aligned_cols=234  Identities=29%  Similarity=0.480  Sum_probs=195.8

Q ss_pred             cccEEECCC-CccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          495 THKVLDMRM-NNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       495 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      .|++|++++ |.++|.+|..++++++|++|+|++|++.+..+..+..++.|+.+++++|++.+.+|..+.++++++.+++
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeec
Confidence            455555554 5566677777888888888888888888777777888888888888888888888888888888888888


Q ss_pred             cCCcCCCCCCCCCCCcCCCCc-cEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519          574 RSNRFWGPIGDNTTIVPFPRF-RIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID  652 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (892)
                      ++|.+.+.+|..+  ..+..+ +.+++++|++++..|..+ .                                      
T Consensus       157 ~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~~-~--------------------------------------  195 (313)
T d1ogqa_         157 DGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-A--------------------------------------  195 (313)
T ss_dssp             CSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-G--------------------------------------
T ss_pred             ccccccccccccc--ccccccccccccccccccccccccc-c--------------------------------------
Confidence            8888888777765  556554 788888888887777542 1                                      


Q ss_pred             hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC
Q 047519          653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL  732 (892)
Q Consensus       653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  732 (892)
                            ......++++++.+.+.+|..++.+++|+.++ +++|.+++.+| .++.+++|+.|||++|+++|.+|.+|.++
T Consensus       196 ------~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L  267 (313)
T d1ogqa_         196 ------NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH-LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL  267 (313)
T ss_dssp             ------GCCCSEEECCSSEEEECCGGGCCTTSCCSEEE-CCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred             ------cccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccCccCeecccCChHHhCC
Confidence                  11234689999999999999999999999998 99999998766 58999999999999999999999999999


Q ss_pred             CCCCEEECCCCcCcccCCCCCCCCcccCCccCCCCCCCCCCCCCCC
Q 047519          733 KYLSVLNLSYNQFEGPIPQGSQFNTFRNDSYVGNSGLCGFPLLESC  778 (892)
Q Consensus       733 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~lc~~~~~~~c  778 (892)
                      ++|++|+|++|+|+|.||+.+.+..++..++.||+.+||.|+. .|
T Consensus       268 ~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            9999999999999999999888888999999999999999874 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.6e-25  Score=247.32  Aligned_cols=355  Identities=24%  Similarity=0.271  Sum_probs=217.9

Q ss_pred             ccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCccccCCCCCCEE
Q 047519          289 GYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSSVYELENLILL  368 (892)
Q Consensus       289 L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  368 (892)
                      ++.+.+++.+.  ...+.+|++|+++   ++.+.. ++.+       ..+++|++|++++|++++. | .++++++|++|
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~---~~~I~~-l~gl-------~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L   93 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQAD---RLGIKS-IDGV-------EYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDI   93 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECC---SSCCCC-CTTG-------GGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEE
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECC---CCCCCC-cccc-------ccCCCCCEEeCcCCcCCCC-c-cccCCcccccc
Confidence            34444444332  2345677777777   666642 3445       5677777777777777643 2 26777777777


Q ss_pred             ECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEEccCCCC
Q 047519          369 RLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFNLSKNRI  448 (892)
Q Consensus       369 ~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l  448 (892)
                      ++++|++.+..   .+..+++|+.|+++++  ...+.. .......+..+....|.+..+.... .....+........ 
T Consensus        94 ~L~~n~i~~i~---~l~~l~~L~~L~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-  165 (384)
T d2omza2          94 LMNNNQIADIT---PLANLTNLTGLTLFNN--QITDID-PLKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFGNQV-  165 (384)
T ss_dssp             ECCSSCCCCCG---GGTTCTTCCEEECCSS--CCCCCG-GGTTCTTCSEEEEEEEEECCCGGGT-TCTTCSEEEEEESC-
T ss_pred             ccccccccccc---cccccccccccccccc--cccccc-ccccccccccccccccccccccccc-cccccccccccccc-
Confidence            77777776432   2566777777777766  322221 1123445555555555544332211 11111111111111 


Q ss_pred             CCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCEEEccCC
Q 047519          449 HGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGN  528 (892)
Q Consensus       449 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  528 (892)
                        .....+...  ..........|.....  .....        +++++.+++++|.+++..|  +..+++|++|++++|
T Consensus       166 --~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~--------l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n  229 (384)
T d2omza2         166 --TDLKPLANL--TTLERLDISSNKVSDI--SVLAK--------LTNLESLIATNNQISDITP--LGILTNLDELSLNGN  229 (384)
T ss_dssp             --CCCGGGTTC--TTCCEEECCSSCCCCC--GGGGG--------CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             --chhhhhccc--cccccccccccccccc--ccccc--------ccccceeeccCCccCCCCc--ccccCCCCEEECCCC
Confidence              011112222  3333333433332221  11111        2366777777777776544  345567777777777


Q ss_pred             CCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519          529 RLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL  608 (892)
Q Consensus       529 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (892)
                      .+++ + ..+..+++|+.|++++|++++..+  +..+++|++|++++|++++..+    +..++.++.++++.|.+++..
T Consensus       230 ~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~~~  301 (384)
T d2omza2         230 QLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDIS  301 (384)
T ss_dssp             CCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCG
T ss_pred             CCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc----ccccccccccccccccccccc
Confidence            7773 3 356677777777777777776433  6667777777777777765433    255667777777777776421


Q ss_pred             CcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCcccccc
Q 047519          609 PTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG  688 (892)
Q Consensus       609 p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~  688 (892)
                      .                                              ...++.++.|++++|++++..  .+..+++|++
T Consensus       302 ~----------------------------------------------~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~  333 (384)
T d2omza2         302 P----------------------------------------------ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR  333 (384)
T ss_dssp             G----------------------------------------------GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCE
T ss_pred             c----------------------------------------------cchhcccCeEECCCCCCCCCc--ccccCCCCCE
Confidence            1                                              011677889999999999653  3888999999


Q ss_pred             ccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCC
Q 047519          689 LNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN  743 (892)
Q Consensus       689 L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  743 (892)
                      |+ +++|+|++ +| .|+++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       334 L~-L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LF-FANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EE-CCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EE-CCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            98 99999984 55 58999999999999999997655  899999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.2e-24  Score=240.29  Aligned_cols=342  Identities=22%  Similarity=0.283  Sum_probs=257.7

Q ss_pred             cCCCCCcEEEccCCCCCcCCCccccCCCCCcEEecCccccccceeeccchhhhhhccCCCCCcCEEEccCCcCCcCCCcc
Q 047519          279 GDLDKRRSITGYVFNFAGGPINWKSTLQSTVVLSTTEAEYMAITKAVKEAIWLQVFVRGRRHYAEPHFSSNQLSGSIPSS  358 (892)
Q Consensus       279 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~~n~l~~~~p~l~~l~l~~~~l~~L~~L~Ls~n~l~~~~p~~  358 (892)
                      ..+.+|++|+++++.++. + +.+..+++|++|+++   +|++++ +|.+       +++++|++|++++|.+.+..  .
T Consensus        41 ~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls---~N~l~~-l~~l-------~~L~~L~~L~L~~n~i~~i~--~  105 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFS---NNQLTD-ITPL-------KNLTKLVDILMNNNQIADIT--P  105 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECC---SSCCCC-CGGG-------TTCTTCCEEECCSSCCCCCG--G
T ss_pred             HHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCc---CCcCCC-Cccc-------cCCccccccccccccccccc--c
Confidence            456789999999999875 3 468889999999999   999875 4558       89999999999999998543  3


Q ss_pred             ccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCccEEEccCCCCCCcchhhhCCCC
Q 047519          359 VYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNLFGLGLSACNISEFPDILRTLHQ  437 (892)
Q Consensus       359 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l~~  437 (892)
                      ++.+++|+.|+++++.+++..+   ......+..+....|.+.  ....... .............   .+ ..+...+.
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~  176 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTIS--DISALSGLTSLQQLSFGNQVT---DL-KPLANLTT  176 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEEC--CCGGGTTCTTCSEEEEEESCC---CC-GGGTTCTT
T ss_pred             cccccccccccccccccccccc---cccccccccccccccccc--ccccccccccccccccccccc---hh-hhhccccc
Confidence            8899999999999999885533   456678888888887432  2211111 1222222222221   11 23445566


Q ss_pred             ccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCC
Q 047519          438 LQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNS  517 (892)
Q Consensus       438 L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l  517 (892)
                      ........|....  ...+..+  ++++.+++++|.+++..|..  .        +++|+.|++++|.++..  ..+..+
T Consensus       177 ~~~~~~~~~~~~~--~~~~~~l--~~~~~l~l~~n~i~~~~~~~--~--------~~~L~~L~l~~n~l~~~--~~l~~l  240 (384)
T d2omza2         177 LERLDISSNKVSD--ISVLAKL--TNLESLIATNNQISDITPLG--I--------LTNLDELSLNGNQLKDI--GTLASL  240 (384)
T ss_dssp             CCEEECCSSCCCC--CGGGGGC--TTCSEEECCSSCCCCCGGGG--G--------CTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ccccccccccccc--ccccccc--cccceeeccCCccCCCCccc--c--------cCCCCEEECCCCCCCCc--chhhcc
Confidence            6666666665542  3344555  88888999988888765421  1        23788888888888753  357788


Q ss_pred             CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEE
Q 047519          518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRII  597 (892)
Q Consensus       518 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  597 (892)
                      ++|+.|++++|.+++..  .+..+++|++|++++|++++..+  +..++.++.+.++.|.+.+..  .+  ..+++++.|
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~--~~~~~l~~L  312 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PI--SNLKNLTYL  312 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GG--GGCTTCSEE
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCCCc--ccccccccccccccccccccc--cc--chhcccCeE
Confidence            99999999999998644  37889999999999999987533  778999999999999987642  22  778999999


Q ss_pred             EcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCCh
Q 047519          598 DLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIP  677 (892)
Q Consensus       598 ~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  677 (892)
                      ++++|++++..|   +.                                           .+++|+.|++++|+++ .+|
T Consensus       313 ~ls~n~l~~l~~---l~-------------------------------------------~l~~L~~L~L~~n~l~-~l~  345 (384)
T d2omza2         313 TLYFNNISDISP---VS-------------------------------------------SLTKLQRLFFANNKVS-DVS  345 (384)
T ss_dssp             ECCSSCCSCCGG---GG-------------------------------------------GCTTCCEEECCSSCCC-CCG
T ss_pred             ECCCCCCCCCcc---cc-------------------------------------------cCCCCCEEECCCCCCC-CCh
Confidence            999999986533   11                                           1678999999999998 455


Q ss_pred             hhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCC
Q 047519          678 EVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSN  719 (892)
Q Consensus       678 ~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  719 (892)
                       .++++++|++|+ +++|+|++.+|  ++++++|++|+|++|
T Consensus       346 -~l~~l~~L~~L~-l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 -SLANLTNINWLS-AGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGGGCTTCCEEE-CCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -hHcCCCCCCEEE-CCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             699999999999 99999997765  899999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5e-23  Score=219.30  Aligned_cols=271  Identities=17%  Similarity=0.158  Sum_probs=193.2

Q ss_pred             ccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCC
Q 047519          415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNL  494 (892)
Q Consensus       415 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~  494 (892)
                      ++.++-++++++++|..+.  +++++|+|++|+|+...+..|..+  ++|++|++++|.+....|..+..++        
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l--~~L~~L~l~~n~~~~i~~~~f~~l~--------   79 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNL--KNLHTLILINNKISKISPGAFAPLV--------   79 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTC--TTCCEEECCSSCCCCBCTTTTTTCT--------
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcc--ccccccccccccccccchhhhhCCC--------
Confidence            4556666666777776542  567777777777775555566666  7777777777777777666666665        


Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCC--CcchhccCCCCCCEEE
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQIND--NFPNWLEILPELQVLI  572 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~  572 (892)
                      .|++|++++|+++. +|..+  ...++.|++.+|.+.+..+..+.....+..++...|....  ..+..+..+++|+.++
T Consensus        80 ~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          80 KLERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             TCCEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             ccCEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccc
Confidence            67777777777764 33332  3467778888888776666666777777788887775443  2345667778888888


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID  652 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (892)
                      +++|.+.. +|.    ..+++|+.|++++|.+++..+..+ .                                      
T Consensus       157 l~~n~l~~-l~~----~~~~~L~~L~l~~n~~~~~~~~~~-~--------------------------------------  192 (305)
T d1xkua_         157 IADTNITT-IPQ----GLPPSLTELHLDGNKITKVDAASL-K--------------------------------------  192 (305)
T ss_dssp             CCSSCCCS-CCS----SCCTTCSEEECTTSCCCEECTGGG-T--------------------------------------
T ss_pred             cccCCccc-cCc----ccCCccCEEECCCCcCCCCChhHh-h--------------------------------------
Confidence            88888753 333    235788888888888876665432 1                                      


Q ss_pred             hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc----
Q 047519          653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ----  728 (892)
Q Consensus       653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~----  728 (892)
                           .++.++.|++++|.+++..+..+.++++|++|+ |++|+|+ .+|+.|.++++|++|+|++|+|+..-+..    
T Consensus       193 -----~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~-L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         193 -----GLNNLAKLGLSFNSISAVDNGSLANTPHLRELH-LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             -----TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE-CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             -----ccccccccccccccccccccccccccccceeee-ccccccc-ccccccccccCCCEEECCCCccCccChhhccCc
Confidence                 155678888899988887788888889999998 9999998 67888888999999999999988543333    


Q ss_pred             --cCCCCCCCEEECCCCcCc-ccCCC
Q 047519          729 --LTSLKYLSVLNLSYNQFE-GPIPQ  751 (892)
Q Consensus       729 --l~~l~~L~~L~ls~N~l~-g~iP~  751 (892)
                        +..+.+|+.|++++|+++ +.+|.
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             chhcccCCCCEEECCCCcCccCcCCH
Confidence              345678899999999885 45543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.1e-22  Score=216.79  Aligned_cols=268  Identities=22%  Similarity=0.259  Sum_probs=220.6

Q ss_pred             CccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccC
Q 047519          437 QLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVN  516 (892)
Q Consensus       437 ~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~  516 (892)
                      ..+.+|-+++.++ .+|..+.    +++++|++++|+++.+.+..+.++.        +|++|++++|.+....|..|..
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~----~~l~~L~Ls~N~i~~l~~~~f~~l~--------~L~~L~l~~n~~~~i~~~~f~~   77 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP----PDTALLDLQNNKITEIKDGDFKNLK--------NLHTLILINNKISKISPGAFAP   77 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC----TTCCEEECCSSCCCCBCTTTTTTCT--------TCCEEECCSSCCCCBCTTTTTT
T ss_pred             cCCEEEecCCCCC-ccCCCCC----CCCCEEECcCCcCCCcChhHhhccc--------cccccccccccccccchhhhhC
Confidence            4677888888888 5666553    7899999999999988877777776        8999999999999888889999


Q ss_pred             CCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccE
Q 047519          517 SCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRI  596 (892)
Q Consensus       517 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  596 (892)
                      +++|++|++++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++...|...........+..+++|++
T Consensus        78 l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          78 LVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             CTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCc
Confidence            999999999999998 556543  46799999999999987777788888899999998876443333334477889999


Q ss_pred             EEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCC
Q 047519          597 IDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGI  676 (892)
Q Consensus       597 L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  676 (892)
                      +++++|.++ .+|...                                              +++|+.|++++|.+++..
T Consensus       155 l~l~~n~l~-~l~~~~----------------------------------------------~~~L~~L~l~~n~~~~~~  187 (305)
T d1xkua_         155 IRIADTNIT-TIPQGL----------------------------------------------PPSLTELHLDGNKITKVD  187 (305)
T ss_dssp             EECCSSCCC-SCCSSC----------------------------------------------CTTCSEEECTTSCCCEEC
T ss_pred             cccccCCcc-ccCccc----------------------------------------------CCccCEEECCCCcCCCCC
Confidence            999999887 344332                                              567899999999999999


Q ss_pred             hhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCC---
Q 047519          677 PEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGS---  753 (892)
Q Consensus       677 p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~---  753 (892)
                      +..+.+++.+++|+ +++|++++..|..|.++++|++|+|++|+|+ .+|.+|..+++|++|+|++|+|+ .|+...   
T Consensus       188 ~~~~~~~~~l~~L~-~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~  264 (305)
T d1xkua_         188 AASLKGLNNLAKLG-LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCP  264 (305)
T ss_dssp             TGGGTTCTTCCEEE-CCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSC
T ss_pred             hhHhhccccccccc-cccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChhhccC
Confidence            99999999999999 9999999888999999999999999999998 67899999999999999999998 455421   


Q ss_pred             -----CCCcccCCccCCCCCCC
Q 047519          754 -----QFNTFRNDSYVGNSGLC  770 (892)
Q Consensus       754 -----~~~~~~~~~~~gN~~lc  770 (892)
                           ...++....+.|||+-+
T Consensus       265 ~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCG
T ss_pred             cchhcccCCCCEEECCCCcCcc
Confidence                 12234445566777544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.6e-23  Score=217.86  Aligned_cols=179  Identities=19%  Similarity=0.124  Sum_probs=96.8

Q ss_pred             EEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcc
Q 047519          417 GLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH  496 (892)
Q Consensus       417 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L  496 (892)
                      .++.++++++++|..+.  +.+++|+|++|+|+...+..|..+  ++|++|++++|++..+.+..+..+.        .+
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l--~~L~~L~ls~n~l~~i~~~~~~~~~--------~~   82 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRAC--RNLTILWLHSNVLARIDAAAFTGLA--------LL   82 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTCT--------TC
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcc--ccccccccccccccccccccccccc--------cc
Confidence            34556666666665432  456777777777765444556555  6666666666666655554444333        44


Q ss_pred             cEEECC-CCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519          497 KVLDMR-MNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS  575 (892)
Q Consensus       497 ~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  575 (892)
                      ..++.. .+.++...+..|.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|+.|++++
T Consensus        83 ~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccccc
Confidence            444432 3344444445555555555555555555544444455555555555555555554444555555555555555


Q ss_pred             CcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCC
Q 047519          576 NRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLP  609 (892)
Q Consensus       576 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  609 (892)
                      |++.+..+..+  ..+++|+++++++|++++..|
T Consensus       163 N~l~~l~~~~f--~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         163 NRISSVPERAF--RGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             SCCCEECTTTT--TTCTTCCEEECCSSCCCEECT
T ss_pred             Ccccccchhhh--ccccccchhhhhhccccccCh
Confidence            55544434333  445555555555555554433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.6e-23  Score=216.40  Aligned_cols=210  Identities=20%  Similarity=0.161  Sum_probs=171.7

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEcc-CCCCCCCcchhccCCCCCCEEEc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVG-NNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      .+++|+|++|+|+...+..|.++++|++|++++|++.+..+..+..++.++.++.. .|.++...+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            56777777777776666678888888888888888887777777788888888765 55677766778888888888888


Q ss_pred             cCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchh
Q 047519          574 RSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDI  653 (892)
Q Consensus       574 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (892)
                      ++|.+....+..+  ...++|+.+++++|++++..+ ..+..                                      
T Consensus       113 ~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~i~~-~~f~~--------------------------------------  151 (284)
T d1ozna_         113 DRCGLQELGPGLF--RGLAALQYLYLQDNALQALPD-DTFRD--------------------------------------  151 (284)
T ss_dssp             TTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT-TTTTT--------------------------------------
T ss_pred             CCccccccccccc--chhcccchhhhccccccccCh-hHhcc--------------------------------------
Confidence            8888866655555  677888999999999885443 32221                                      


Q ss_pred             hHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCC
Q 047519          654 QIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLK  733 (892)
Q Consensus       654 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  733 (892)
                           .+.|+.|++++|++++..|..|.++++|+.++ +++|++++..|..|.++++|++||+++|++++..|..|..++
T Consensus       152 -----~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~-l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         152 -----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             -----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             -----ccchhhcccccCcccccchhhhccccccchhh-hhhccccccChhHhhhhhhccccccccccccccccccccccc
Confidence                 56688899999999988888899999999998 999999988899999999999999999999998889999999


Q ss_pred             CCCEEECCCCcCcccCCC
Q 047519          734 YLSVLNLSYNQFEGPIPQ  751 (892)
Q Consensus       734 ~L~~L~ls~N~l~g~iP~  751 (892)
                      +|++|++++|++.+..+.
T Consensus       226 ~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         226 ALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             TCCEEECCSSCEECSGGG
T ss_pred             ccCEEEecCCCCCCCccc
Confidence            999999999999987653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.1e-21  Score=199.65  Aligned_cols=200  Identities=22%  Similarity=0.230  Sum_probs=154.0

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      .+.+++.+++.++. +|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+|+. +| .++.+++|++|+|+
T Consensus        11 ~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            44556667766663 455443  467888888888876555677788888888888888875 33 35677888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|++++. +..+  ..+++|++|++++|.+.+..+..+ .                                        
T Consensus        86 ~N~l~~~-~~~~--~~l~~L~~L~l~~~~~~~~~~~~~-~----------------------------------------  121 (266)
T d1p9ag_          86 HNQLQSL-PLLG--QTLPALTVLDVSFNRLTSLPLGAL-R----------------------------------------  121 (266)
T ss_dssp             SSCCSSC-CCCT--TTCTTCCEEECCSSCCCCCCSSTT-T----------------------------------------
T ss_pred             ccccccc-cccc--ccccccccccccccccceeecccc-c----------------------------------------
Confidence            8887654 3333  677888888888888875433221 1                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                         .+.+++.|++++|.+++..+..+..++.|+.|+ +++|+|++..|..|+.+++|++|||++|+|+ .+|..+..+++
T Consensus       122 ---~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~-l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         122 ---GLGELQELYLKGNELKTLPPGLLTPTPKLEKLS-LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             ---TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             ---cccccccccccccccceeccccccccccchhcc-cccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence               156788899999999877777788899999998 9999999888888999999999999999999 88888889999


Q ss_pred             CCEEECCCCcCccc
Q 047519          735 LSVLNLSYNQFEGP  748 (892)
Q Consensus       735 L~~L~ls~N~l~g~  748 (892)
                      |+.|+|++|++.+.
T Consensus       197 L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         197 LPFAFLHGNPWLCN  210 (266)
T ss_dssp             CSEEECCSCCBCCS
T ss_pred             CCEEEecCCCCCCC
Confidence            99999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.2e-20  Score=190.62  Aligned_cols=201  Identities=22%  Similarity=0.222  Sum_probs=130.5

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCc
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNL  415 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  415 (892)
                      .+...+.+++.++++++ .+|+.+.  +++++|+|++|.|++ ++...|.++++|++|+|++|++  . .++....+++|
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l--~-~l~~~~~l~~L   79 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAEL--T-KLQVDGTLPVL   79 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCC--C-EEECCSCCTTC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCC-cCHHHhhccccccccccccccc--c-ccccccccccc
Confidence            45567778888888888 5676664  578999999999984 4447888899999999999844  2 23333356667


Q ss_pred             cEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCc
Q 047519          416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLT  495 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~  495 (892)
                      ++|++++|+++.++..+..+++|+.|++++|.+.+..+..+..+  .+++.|++++|.++.                   
T Consensus        80 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~l~~L~l~~n~l~~-------------------  138 (266)
T d1p9ag_          80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELKT-------------------  138 (266)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--TTCCEEECTTSCCCC-------------------
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccc--cccccccccccccce-------------------
Confidence            77777777766666666666666666666666665444444443  455555555554444                   


Q ss_pred             ccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccC
Q 047519          496 HKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRS  575 (892)
Q Consensus       496 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~  575 (892)
                                   ..+..+..+++++.+++++|++++..+..|..+++|++|+|++|+|+. +|..+..+++|+.|+|++
T Consensus       139 -------------l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         139 -------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             -------------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCS
T ss_pred             -------------eccccccccccchhcccccccccccCccccccccccceeecccCCCcc-cChhHCCCCCCCEEEecC
Confidence                         444445555566666666666665555556666666666666666663 555555666666666666


Q ss_pred             CcC
Q 047519          576 NRF  578 (892)
Q Consensus       576 N~l  578 (892)
                      |++
T Consensus       205 Np~  207 (266)
T d1p9ag_         205 NPW  207 (266)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=6.2e-18  Score=183.11  Aligned_cols=304  Identities=25%  Similarity=0.312  Sum_probs=178.3

Q ss_pred             CCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEE
Q 047519          339 RHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGL  418 (892)
Q Consensus       339 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  418 (892)
                      .++++|+|+++.++ .+|+.   .++|++|++++|+|+ .+| .   ...+|+.|++++|++......     .+.|++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp-~---~~~~L~~L~l~~n~l~~l~~l-----p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELP-E---LPQSLKSLLVDNNNLKALSDL-----PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCC-C---CCTTCCEEECCSSCCSCCCSC-----CTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccc-c---chhhhhhhhhhhcccchhhhh-----ccccccc
Confidence            35778888888887 56653   467888888888887 556 2   246788888888854322221     2468888


Q ss_pred             EccCCCCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccE
Q 047519          419 GLSACNISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKV  498 (892)
Q Consensus       419 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~  498 (892)
                      ++++|.++.+|. ++.+++|+.|+++++.+...... .     ..+..+.+..+.....  ..+..+        +.++.
T Consensus       104 ~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~-~-----~~l~~l~~~~~~~~~~--~~l~~l--------~~l~~  166 (353)
T d1jl5a_         104 GVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL-P-----PSLEFIAAGNNQLEEL--PELQNL--------PFLTA  166 (353)
T ss_dssp             ECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC-C-----TTCCEEECCSSCCSSC--CCCTTC--------TTCCE
T ss_pred             cccccccccccc-hhhhccceeeccccccccccccc-c-----ccccchhhcccccccc--cccccc--------cccee
Confidence            888888888775 56788888888888877643321 1     5566677666554432  122222        25667


Q ss_pred             EECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcC
Q 047519          499 LDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRF  578 (892)
Q Consensus       499 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  578 (892)
                      ++++.|.+.... .   .....+.+...++.+. .++ .+..++.|+.+++++|.... ++.   ...++..+.+.++.+
T Consensus       167 L~l~~n~~~~~~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         167 IYADNNSLKKLP-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYL  236 (353)
T ss_dssp             EECCSSCCSSCC-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCC
T ss_pred             cccccccccccc-c---cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---ccccccccccccccc
Confidence            777777665322 1   1223455566555554 333 34567777777777776654 232   345667777777766


Q ss_pred             CCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHh
Q 047519          579 WGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERI  658 (892)
Q Consensus       579 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (892)
                      ....      ...+.+...++..+.+.+....                                                
T Consensus       237 ~~~~------~~~~~l~~~~~~~~~~~~l~~l------------------------------------------------  262 (353)
T d1jl5a_         237 TDLP------ELPQSLTFLDVSENIFSGLSEL------------------------------------------------  262 (353)
T ss_dssp             SCCC------CCCTTCCEEECCSSCCSEESCC------------------------------------------------
T ss_pred             cccc------cccccccccccccccccccccc------------------------------------------------
Confidence            4321      1234556666666555422100                                                


Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      .......++..+.+.+.    ...+++|++|+ |++|+|+ .+|+.   +++|+.|+|++|+|+ .+|..   +++|++|
T Consensus       263 ~~~~~~~~~~~~~~~~~----~~~~~~L~~L~-Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L  329 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRSL----CDLPPSLEELN-VSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQL  329 (353)
T ss_dssp             CTTCCEEECCSSCCSEE----CCCCTTCCEEE-CCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred             cchhcccccccCccccc----cccCCCCCEEE-CCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEE
Confidence            11223444555544421    12345666776 7777776 45543   456667777777776 45542   3456677


Q ss_pred             ECCCCcCcccCCC
Q 047519          739 NLSYNQFEGPIPQ  751 (892)
Q Consensus       739 ~ls~N~l~g~iP~  751 (892)
                      ++++|+++ .+|.
T Consensus       330 ~L~~N~L~-~lp~  341 (353)
T d1jl5a_         330 HVEYNPLR-EFPD  341 (353)
T ss_dssp             ECCSSCCS-SCCC
T ss_pred             ECcCCcCC-CCCc
Confidence            77777766 4553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.1e-16  Score=173.18  Aligned_cols=297  Identities=23%  Similarity=0.265  Sum_probs=196.7

Q ss_pred             CCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCCCCCCccEEEccCCCCCCcchhhhCCCCccEEE
Q 047519          363 ENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNSSFPNLFGLGLSACNISEFPDILRTLHQLQWFN  442 (892)
Q Consensus       363 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  442 (892)
                      .++++|+|+++.++ .+| +   ..++|++|++++|++.   .+|.  .+.+|+.|++++|+++.++..   .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp-~---~~~~L~~L~Ls~N~l~---~lp~--~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLP-E---LPPHLESLVASCNSLT---ELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCC-S---CCTTCSEEECCSSCCS---SCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCC-C---CCCCCCEEECCCCCCc---cccc--chhhhhhhhhhhcccchhhhh---cccccccc
Confidence            46889999999987 566 2   3578999999999543   3343  256899999999988877642   24689999


Q ss_pred             ccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCCCCE
Q 047519          443 LSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCNLTN  522 (892)
Q Consensus       443 Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  522 (892)
                      +++|.+. .+|. +..+  ++|+.|++++|.+...... ..           .+..+.+..+...  ....+..++.++.
T Consensus       105 L~~n~l~-~lp~-~~~l--~~L~~L~l~~~~~~~~~~~-~~-----------~l~~l~~~~~~~~--~~~~l~~l~~l~~  166 (353)
T d1jl5a_         105 VSNNQLE-KLPE-LQNS--SFLKIIDVDNNSLKKLPDL-PP-----------SLEFIAAGNNQLE--ELPELQNLPFLTA  166 (353)
T ss_dssp             CCSSCCS-SCCC-CTTC--TTCCEEECCSSCCSCCCCC-CT-----------TCCEEECCSSCCS--SCCCCTTCTTCCE
T ss_pred             ccccccc-cccc-hhhh--ccceeeccccccccccccc-cc-----------cccchhhcccccc--cccccccccccee
Confidence            9999887 4454 3455  8899999988887755432 22           4555666555443  2344666778888


Q ss_pred             EEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCC
Q 047519          523 LNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHN  602 (892)
Q Consensus       523 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  602 (892)
                      +.+++|.... ++..   ....+.+...++.+.. ++ .+..++.|+.+++++|.... ++     ....++..+++.+|
T Consensus       167 L~l~~n~~~~-~~~~---~~~~~~l~~~~~~~~~-~~-~~~~l~~L~~l~l~~n~~~~-~~-----~~~~~l~~~~~~~~  234 (353)
T d1jl5a_         167 IYADNNSLKK-LPDL---PLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LP-----DLPPSLEALNVRDN  234 (353)
T ss_dssp             EECCSSCCSS-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC-----SCCTTCCEEECCSS
T ss_pred             cccccccccc-cccc---cccccccccccccccc-cc-cccccccccccccccccccc-cc-----cccccccccccccc
Confidence            8888887763 3322   2335566776666554 33 25567888888888887643 22     22356777788877


Q ss_pred             CCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcC
Q 047519          603 EFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGK  682 (892)
Q Consensus       603 ~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~  682 (892)
                      .+..... .                                               ...+...++..+.+.+     +..
T Consensus       235 ~~~~~~~-~-----------------------------------------------~~~l~~~~~~~~~~~~-----l~~  261 (353)
T d1jl5a_         235 YLTDLPE-L-----------------------------------------------PQSLTFLDVSENIFSG-----LSE  261 (353)
T ss_dssp             CCSCCCC-C-----------------------------------------------CTTCCEEECCSSCCSE-----ESC
T ss_pred             ccccccc-c-----------------------------------------------cccccccccccccccc-----ccc
Confidence            7763211 1                                               2345556666665542     111


Q ss_pred             c-cccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCCCCCCCCcccCC
Q 047519          683 L-NLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPQGSQFNTFRND  761 (892)
Q Consensus       683 l-~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~  761 (892)
                      + ......+ +..|.+.+. +   ..+++|++|+|++|+|+ .+|..   +++|+.|++++|+|+ .+|..  ..++...
T Consensus       262 l~~~~~~~~-~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~--~~~L~~L  329 (353)
T d1jl5a_         262 LPPNLYYLN-ASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL--PQNLKQL  329 (353)
T ss_dssp             CCTTCCEEE-CCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC--CTTCCEE
T ss_pred             ccchhcccc-cccCccccc-c---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc--cCCCCEE
Confidence            1 2233455 777777632 2   34688999999999999 67754   578999999999998 67753  3456666


Q ss_pred             ccCCCC
Q 047519          762 SYVGNS  767 (892)
Q Consensus       762 ~~~gN~  767 (892)
                      .+.+|+
T Consensus       330 ~L~~N~  335 (353)
T d1jl5a_         330 HVEYNP  335 (353)
T ss_dssp             ECCSSC
T ss_pred             ECcCCc
Confidence            777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.8e-19  Score=200.20  Aligned_cols=213  Identities=17%  Similarity=0.149  Sum_probs=123.3

Q ss_pred             ccEEECCCCccCcc----ccccccCCCCCCEEEccCCCCCC-----CCCccccCCCCCcEEEccCCCCCCCc----chhc
Q 047519          496 HKVLDMRMNNFNGK----ISQKFVNSCNLTNLNLNGNRLEG-----PLPLSLVNCHHLEVLDVGNNQINDNF----PNWL  562 (892)
Q Consensus       496 L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~  562 (892)
                      ...+++..+.+...    ....+...+.++.+++++|.+..     ..+........++.+++++|.+....    ...+
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l  279 (460)
T d1z7xw1         200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  279 (460)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccc
Confidence            34455555544321    11223345566777777766532     11223344566777777777665421    2233


Q ss_pred             cCCCCCCEEEccCCcCCCCCCCCC---CCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCC
Q 047519          563 EILPELQVLILRSNRFWGPIGDNT---TIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSN  639 (892)
Q Consensus       563 ~~l~~L~~L~L~~N~l~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~  639 (892)
                      ...+.++.+++++|.+.......+   .......|+.+++++|.++......    +                       
T Consensus       280 ~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~----l-----------------------  332 (460)
T d1z7xw1         280 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH----F-----------------------  332 (460)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH----H-----------------------
T ss_pred             cccccccccccccccccccccchhhccccccccccccccccccchhhhhhhh----c-----------------------
Confidence            456667777777776532111000   0012345677777777665221110    0                       


Q ss_pred             ccceEEEEEccchhhHHHhhhhheeeecCCCcCCCC----Chhhhc-CccccccccccCCCCCCCC----cchhccCCCC
Q 047519          640 YYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGG----IPEVVG-KLNLLKGLNNISHNNLTGD----IPSLLRNLTE  710 (892)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~-~l~~L~~L~~Ls~N~l~~~----ip~~l~~l~~  710 (892)
                                   ..+....++|+.|||++|++++.    ++..+. ..+.|++|+ |++|+|+..    +++.+...++
T Consensus       333 -------------~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~-Ls~n~i~~~~~~~l~~~l~~~~~  398 (460)
T d1z7xw1         333 -------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW-LADCDVSDSSCSSLAATLLANHS  398 (460)
T ss_dssp             -------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE-CTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             -------------ccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEE-CCCCCCChHHHHHHHHHHhcCCC
Confidence                         01122356789999999998743    334443 466799998 999999843    5566777899


Q ss_pred             CCeeeCCCCcCCCCCcccc----C-CCCCCCEEECCCCcCcccC
Q 047519          711 VESLDLSSNMLVGHIPTQL----T-SLKYLSVLNLSYNQFEGPI  749 (892)
Q Consensus       711 L~~L~Ls~N~l~~~ip~~l----~-~l~~L~~L~ls~N~l~g~i  749 (892)
                      |++|||++|+|+......|    . +...|+.|++.+|++....
T Consensus       399 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            9999999999975433332    2 3447999999999987543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.1e-16  Score=159.38  Aligned_cols=185  Identities=18%  Similarity=0.243  Sum_probs=124.2

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +|+.|++.+|.++..  ..+..+++|++|++++|++++..|  +..+++|+++++++|.++. ++ .+..+++|+.++++
T Consensus        42 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-cc-cccccccccccccc
Confidence            445555555555432  235566677777777777764332  6677777777777777665 22 36667777777777


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      ++...+..+.    ...+.++.+.++.+.+....+.   .                                        
T Consensus       116 ~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~---~----------------------------------------  148 (227)
T d1h6ua2         116 STQITDVTPL----AGLSNLQVLYLDLNQITNISPL---A----------------------------------------  148 (227)
T ss_dssp             TSCCCCCGGG----TTCTTCCEEECCSSCCCCCGGG---G----------------------------------------
T ss_pred             cccccccchh----ccccchhhhhchhhhhchhhhh---c----------------------------------------
Confidence            7766543321    4456677777777766533221   0                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  734 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  734 (892)
                         ..+.|+.|++++|.+++..  .++++++|+.|+ +++|++++ +|. ++++++|+.|+|++|++++ +| .+.++++
T Consensus       149 ---~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~-Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~  218 (227)
T d1h6ua2         149 ---GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLK-ADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VS-PLANTSN  218 (227)
T ss_dssp             ---GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE-CCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTT
T ss_pred             ---cccccccccccccccccch--hhcccccceecc-cCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Cc-ccccCCC
Confidence               1566788888888887433  378888999998 99999885 443 7888999999999999885 44 3888899


Q ss_pred             CCEEECCC
Q 047519          735 LSVLNLSY  742 (892)
Q Consensus       735 L~~L~ls~  742 (892)
                      |++|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99998863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=160.97  Aligned_cols=203  Identities=15%  Similarity=0.099  Sum_probs=132.6

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCC-CccccCCCCCcEEEccC-CCCCCCcchhccCCCCCCEEE
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPL-PLSLVNCHHLEVLDVGN-NQINDNFPNWLEILPELQVLI  572 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  572 (892)
                      ++++|++++|+++...+..|.++++|++|++++|.+...+ +..|.+++.++++++.. |.+....+..|.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4566666666666544556777778888888888776543 34567777788777654 566666667777788888888


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccch
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGID  652 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  652 (892)
                      +++|.+....+.. ....+..+..+..+++.+....+.. +..                                     
T Consensus       110 l~~~~l~~~~~~~-~~~~l~~l~~~~~~n~~l~~i~~~~-~~~-------------------------------------  150 (242)
T d1xwdc1         110 ISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNS-FVG-------------------------------------  150 (242)
T ss_dssp             EESCCCCSCCCCT-TTCBSSCEEEEEESCTTCCEECTTS-STT-------------------------------------
T ss_pred             cchhhhccccccc-ccccccccccccccccccccccccc-ccc-------------------------------------
Confidence            8888775433221 1234455666666666665322221 110                                     


Q ss_pred             hhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCC
Q 047519          653 IQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSL  732 (892)
Q Consensus       653 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  732 (892)
                           ....++.|++++|+++. ++.......+++.+.++++|+++...+..|.++++|++|||++|+|+...+..|.++
T Consensus       151 -----~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         151 -----LSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             -----SBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             -----ccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence                 02357788999999884 444444455555443378888985556678999999999999999985555567777


Q ss_pred             CCCCEEECCC
Q 047519          733 KYLSVLNLSY  742 (892)
Q Consensus       733 ~~L~~L~ls~  742 (892)
                      +.|+++++.+
T Consensus       225 ~~L~~l~~~~  234 (242)
T d1xwdc1         225 KKLRARSTYN  234 (242)
T ss_dssp             CEEESSSEES
T ss_pred             cccccCcCCC
Confidence            7777666543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.1e-19  Score=197.46  Aligned_cols=62  Identities=24%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             eEEEEECCCCCCCCCC-CCCCCccCCCCCCeEecCCCCCCCC---CCCCcCcCCCCCCeEeCCCCCCc
Q 047519           65 HVIGLDLSCSWLHGNI-PSNSSLFFLPHIRKLNLAFNDFNYS---EISSGFSQLRSLTLLNLSSSNFM  128 (892)
Q Consensus        65 ~v~~L~L~~~~l~g~~-~~~~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~Ls~n~~~  128 (892)
                      .+..||++++++++.- ..  -+..++++++|+|++|.++..   .++..+..+++|++|||++|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~--l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHH--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCChHHHHH--HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            3566666666665421 11  133456666666666665431   12344556666666666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3e-16  Score=156.00  Aligned_cols=180  Identities=22%  Similarity=0.315  Sum_probs=125.1

Q ss_pred             ECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCC
Q 047519          500 DMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW  579 (892)
Q Consensus       500 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  579 (892)
                      .+..+.+++.++.  ..+.+|++|++++|.+++. + .+..+++|++|++++|++++..  .++.+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            3344444443332  2345677788888777743 2 3677788888888888887743  2567788888888888776


Q ss_pred             CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhh
Q 047519          580 GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL  659 (892)
Q Consensus       580 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  659 (892)
                      + ++ .+  ..+++|+.|++++|.+.. ++ . +.                                           .+
T Consensus       104 ~-l~-~l--~~l~~L~~L~l~~~~~~~-~~-~-l~-------------------------------------------~l  133 (210)
T d1h6ta2         104 D-LS-SL--KDLKKLKSLSLEHNGISD-IN-G-LV-------------------------------------------HL  133 (210)
T ss_dssp             C-GG-GG--TTCTTCCEEECTTSCCCC-CG-G-GG-------------------------------------------GC
T ss_pred             c-cc-cc--cccccccccccccccccc-cc-c-cc-------------------------------------------cc
Confidence            4 23 22  667788888888887752 22 1 11                                           15


Q ss_pred             hhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEE
Q 047519          660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  739 (892)
Q Consensus       660 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  739 (892)
                      +.++.+++++|.+++  +..+..+++|+.++ +++|++++. +. ++++++|+.|+|++|+++ .+| .+.++++|++|+
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~-l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLS-LEDNQISDI-VP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLE  206 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEE-CCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEE
T ss_pred             ccccccccccccccc--cccccccccccccc-ccccccccc-cc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEE
Confidence            667788888888873  33567788889998 999999854 33 888999999999999987 455 588899999998


Q ss_pred             CCC
Q 047519          740 LSY  742 (892)
Q Consensus       740 ls~  742 (892)
                      |++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.8e-16  Score=156.12  Aligned_cols=204  Identities=21%  Similarity=0.290  Sum_probs=145.3

Q ss_pred             EEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccccccCCCC
Q 047519          440 WFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQKFVNSCN  519 (892)
Q Consensus       440 ~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  519 (892)
                      .++++.+++++.+  .+..+  .+|+.|++.+|.++...  .+..++        +|++|++++|.+++..|  +..+++
T Consensus        23 ~~~l~~~~~~d~~--~~~~l--~~L~~L~l~~~~i~~l~--~l~~l~--------~L~~L~ls~n~i~~~~~--l~~l~~   86 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADL--DGITTLSAFGTGVTTIE--GVQYLN--------NLIGLELKDNQITDLAP--LKNLTK   86 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHH--HTCCEEECTTSCCCCCT--TGGGCT--------TCCEEECCSSCCCCCGG--GTTCCS
T ss_pred             HHHhCCCCcCCcC--CHHHc--CCcCEEECCCCCCCcch--hHhcCC--------CCcEeecCCceeecccc--cccccc
Confidence            3455555555433  23344  66777777777666442  233333        77777777777765443  677888


Q ss_pred             CCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEc
Q 047519          520 LTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDL  599 (892)
Q Consensus       520 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  599 (892)
                      ++++++++|.++ .++ .+.++++|+.++++++...+..  .+...+.++.+.++++.+....+    +..+++|+.|++
T Consensus        87 l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l  158 (227)
T d1h6ua2          87 ITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSI  158 (227)
T ss_dssp             CCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEEC
T ss_pred             cccccccccccc-ccc-cccccccccccccccccccccc--hhccccchhhhhchhhhhchhhh----hccccccccccc
Confidence            888888888887 343 5778888999999888887643  35667888899998888765433    266788999999


Q ss_pred             CCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhh
Q 047519          600 SHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEV  679 (892)
Q Consensus       600 s~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~  679 (892)
                      ++|.+++..+   ++                                           .+++|+.|||++|++++ +|. 
T Consensus       159 ~~n~~~~~~~---l~-------------------------------------------~l~~L~~L~Ls~n~l~~-l~~-  190 (227)
T d1h6ua2         159 GNAQVSDLTP---LA-------------------------------------------NLSKLTTLKADDNKISD-ISP-  190 (227)
T ss_dssp             CSSCCCCCGG---GT-------------------------------------------TCTTCCEEECCSSCCCC-CGG-
T ss_pred             cccccccchh---hc-------------------------------------------ccccceecccCCCccCC-Chh-
Confidence            9998864322   11                                           15678899999999984 443 


Q ss_pred             hcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCC
Q 047519          680 VGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSS  718 (892)
Q Consensus       680 ~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  718 (892)
                      ++++++|++|+ |++|++++..|  ++++++|+.|+|++
T Consensus       191 l~~l~~L~~L~-Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVH-LKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEE-CTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEE-CcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            88899999998 99999995433  88999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=9.5e-16  Score=150.93  Aligned_cols=176  Identities=27%  Similarity=0.347  Sum_probs=116.6

Q ss_pred             ECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCC
Q 047519          500 DMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFW  579 (892)
Q Consensus       500 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  579 (892)
                      .++.+.+++.++  ...+.++++|++++|.++. + ..+..+++|++|++++|++++..|  ++++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            344444444332  2245567777777777763 3 246677778888888877776433  677777888888777765


Q ss_pred             CCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhh
Q 047519          580 GPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERIL  659 (892)
Q Consensus       580 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  659 (892)
                      ...+    +..++.|+.|++++|.+....+   +.                                           .+
T Consensus        98 ~~~~----l~~l~~L~~L~l~~~~~~~~~~---~~-------------------------------------------~l  127 (199)
T d2omxa2          98 DITP----LANLTNLTGLTLFNNQITDIDP---LK-------------------------------------------NL  127 (199)
T ss_dssp             CCGG----GTTCTTCSEEECCSSCCCCCGG---GT-------------------------------------------TC
T ss_pred             cccc----cccccccccccccccccccccc---cc-------------------------------------------hh
Confidence            4321    2667777888887777764321   11                                           15


Q ss_pred             hhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEE
Q 047519          660 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  738 (892)
Q Consensus       660 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  738 (892)
                      +.|+.|++++|++. .+| .+..+++|+.|+ +++|++++. + .++++++|++|++++|+++. +| .+..+++|+.|
T Consensus       128 ~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~-l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DIS-ALSGLTSLQQLN-FSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG-GGTTCTTCSEEE-CCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhc-ccc-cccccccccccc-cccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            56778888888776 343 477788888887 888888754 3 37788888888888888874 44 47777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=7.3e-16  Score=150.79  Aligned_cols=131  Identities=21%  Similarity=0.203  Sum_probs=92.6

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc-ccccccCCCCCCEEEccCCCCCCCCCccccCCCC
Q 047519          465 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-ISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHH  543 (892)
Q Consensus       465 ~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  543 (892)
                      +.++.++++++.++.. ++          +++++|+|++|+|++. .+..|.++++|++|++++|.+.+..+..+..+++
T Consensus        11 ~~v~Cs~~~L~~iP~~-lp----------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRD-IP----------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSSCCSC-CC----------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEEeCCCcCccCCC-CC----------CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc
Confidence            4566666666644322 21          1556677777777653 3455677778888888888888777777778888


Q ss_pred             CcEEEccCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcC
Q 047519          544 LEVLDVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVL  608 (892)
Q Consensus       544 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  608 (892)
                      |++|+|++|+|+...|.+|.++++|++|+|++|+|++..+..+  ..+++|++|+|++|.+....
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSG
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCccccccccccccccccc
Confidence            8888888888887767777788888888888888877666655  67778888888888776443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-15  Score=156.01  Aligned_cols=216  Identities=19%  Similarity=0.210  Sum_probs=123.1

Q ss_pred             CEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCC-C-CCCCccEEE
Q 047519          342 AEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVN-S-SFPNLFGLG  419 (892)
Q Consensus       342 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~-~l~~L~~L~  419 (892)
                      +.++.++.+++ .+|..+.  +++++|++++|.++ .++...|.++++|++|++++|  .....++.. + .+++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n--~~~~~i~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESC--TTCCEECSSSEESCTTCCEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccc--cccceeecccccccccccccc
Confidence            46666666666 5665543  46788888888876 445466777888888888887  444433332 2 667777776


Q ss_pred             ccC-CCCCCc-chhhhCCCCccEEEccCCCCCCCCchh-hhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcc
Q 047519          420 LSA-CNISEF-PDILRTLHQLQWFNLSKNRIHGRISSW-MWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH  496 (892)
Q Consensus       420 L~~-n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L  496 (892)
                      +.. |++..+ +..+..+++|+++++++|.+....+.. +..+  ..+..+...++.+....+..+..+.       ..+
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l--~~l~~~~~~n~~l~~i~~~~~~~~~-------~~l  155 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--QKVLLDIQDNINIHTIERNSFVGLS-------FES  155 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBS--SCEEEEEESCTTCCEECTTSSTTSB-------SSC
T ss_pred             ccccccccccccccccccccccccccchhhhcccccccccccc--ccccccccccccccccccccccccc-------ccc
Confidence            653 455533 356777888888888888776432221 2222  4555555556566555444443332       145


Q ss_pred             cEEECCCCccCccccccccCCCCCCEE-EccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEc
Q 047519          497 KVLDMRMNNFNGKISQKFVNSCNLTNL-NLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLIL  573 (892)
Q Consensus       497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  573 (892)
                      +.+++++|+++...+..+ ...+++++ .+++|+++...+..|.++++|++|+|++|+|+...+..|.++++|+.+++
T Consensus       156 ~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             EEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             eeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            556666666654333322 33344333 34555565333344566666666666666666543444555555554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.1e-15  Score=149.74  Aligned_cols=163  Identities=26%  Similarity=0.338  Sum_probs=118.5

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      +++.|++++|.++...  .+..+++|++|++++|++++. + .+..+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            4455555555554321  256677888888888888753 3 35778888888888888876 44 47778888888888


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|.+... + .+  ..++.++.+++++|.+++..+   ..                                        
T Consensus       121 ~~~~~~~-~-~l--~~l~~l~~l~~~~n~l~~~~~---~~----------------------------------------  153 (210)
T d1h6ta2         121 HNGISDI-N-GL--VHLPQLESLYLGNNKITDITV---LS----------------------------------------  153 (210)
T ss_dssp             TSCCCCC-G-GG--GGCTTCCEEECCSSCCCCCGG---GG----------------------------------------
T ss_pred             ccccccc-c-cc--ccccccccccccccccccccc---cc----------------------------------------
Confidence            8887532 2 22  677888888888888874321   11                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCC
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSS  718 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  718 (892)
                         .+++|+.+++++|++++ ++ .+.++++|+.|+ +++|+|+ .+| .|.++++|++|+|++
T Consensus       154 ---~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~-Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         154 ---RLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLY-LSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---GCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE-CCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ---ccccccccccccccccc-cc-cccCCCCCCEEE-CCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence               15678899999999985 44 388899999998 9999998 455 589999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=4.1e-16  Score=152.60  Aligned_cols=173  Identities=21%  Similarity=0.227  Sum_probs=131.5

Q ss_pred             ccEEEccCCCCCCcchhhhCCCCccEEEccCCCCCCCC-chhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCC
Q 047519          415 LFGLGLSACNISEFPDILRTLHQLQWFNLSKNRIHGRI-SSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSN  493 (892)
Q Consensus       415 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~  493 (892)
                      .+.++.++++++++|..+.  +++++|+|++|+|++.+ +..|..+  ++|+.|++++|.+...++..+..+.       
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l--~~L~~L~L~~N~i~~~~~~~~~~~~-------   78 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRL--PHLVKLELKRNQLTGIEPNAFEGAS-------   78 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGC--TTCCEEECCSSCCCCBCTTTTTTCT-------
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCC--ceEeeeecccccccccccccccccc-------
Confidence            4578888888888887553  67899999999997644 4556777  8899999999998888887777776       


Q ss_pred             CcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEEE
Q 047519          494 LTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVLI  572 (892)
Q Consensus       494 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~  572 (892)
                       .|++|++++|+++...+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+..... .++.  ..++.+.
T Consensus        79 -~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~  155 (192)
T d1w8aa_          79 -HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKS  155 (192)
T ss_dssp             -TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHC
T ss_pred             -ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhc
Confidence             88888888888888778888888899999999999887777788888889999998888876432 1221  2345556


Q ss_pred             ccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcC
Q 047519          573 LRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTG  606 (892)
Q Consensus       573 L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  606 (892)
                      +..+.++...|..     +..++.++|+.|.++-
T Consensus       156 l~~~~~~c~~p~~-----l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         156 LNGGAARCGAPSK-----VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             CSGGGCBBCSSTT-----TTTSBGGGSCTTTCCC
T ss_pred             ccCCCeEeCCChh-----hcCCEeeecCHhhCcC
Confidence            6667766555543     3556677888888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=1.3e-14  Score=142.59  Aligned_cols=159  Identities=28%  Similarity=0.316  Sum_probs=103.7

Q ss_pred             cccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEcc
Q 047519          495 THKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILR  574 (892)
Q Consensus       495 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  574 (892)
                      ++++|++++|.++..  ..+..+++|++|++++|++++..|  +.++++|++|++++|.+... + .+.++++|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-cccccccccccccc
Confidence            334444444444321  234556677777777777774322  67777777777777777653 3 36677777777777


Q ss_pred             CCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhh
Q 047519          575 SNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQ  654 (892)
Q Consensus       575 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  654 (892)
                      +|.+....+  +  ..+++|+.|++++|++.. +| . +.                                        
T Consensus       115 ~~~~~~~~~--~--~~l~~L~~L~l~~n~l~~-~~-~-l~----------------------------------------  147 (199)
T d2omxa2         115 NNQITDIDP--L--KNLTNLNRLELSSNTISD-IS-A-LS----------------------------------------  147 (199)
T ss_dssp             SSCCCCCGG--G--TTCTTCSEEECCSSCCCC-CG-G-GT----------------------------------------
T ss_pred             ccccccccc--c--chhhhhHHhhhhhhhhcc-cc-c-cc----------------------------------------
Confidence            777654322  2  567778888888887763 22 1 11                                        


Q ss_pred             HHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCee
Q 047519          655 IERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESL  714 (892)
Q Consensus       655 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L  714 (892)
                         .+++++.|++++|++++ ++ .++++++|+.|+ +++|++++ +| .++++++|++|
T Consensus       148 ---~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~-ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         148 ---GLTSLQQLNFSSNQVTD-LK-PLANLTTLERLD-ISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ---TCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE-CCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ---ccccccccccccccccC-Cc-cccCCCCCCEEE-CCCCCCCC-Cc-cccCCCCCCcC
Confidence               15567788888888874 33 377888888888 88888884 44 47788888775

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.1e-15  Score=155.05  Aligned_cols=253  Identities=15%  Similarity=0.170  Sum_probs=144.1

Q ss_pred             cEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCcc-ccccccCC
Q 047519          439 QWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-ISQKFVNS  517 (892)
Q Consensus       439 ~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~-~~~~~~~l  517 (892)
                      +.+|++++.+.......+..   .....+.++...+.......+. .        .+|++||++++.+++. +...+..+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~---~~~~~lrl~~~~~~~~~~~~~~-~--------~~L~~LdLs~~~i~~~~l~~l~~~c   70 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQPLAEHFS-P--------FRVQHMDLSNSVIEVSTLHGILSQC   70 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH---TTCSEEECTTCEECSCCCSCCC-C--------BCCCEEECTTCEECHHHHHHHHTTB
T ss_pred             CEEECCCCCCCchHHHHHHh---ccceEeeccccccccchhhhcc-C--------CCCCEEECCCCccCHHHHHHHHHhC
Confidence            36777777664222222221   2344555554443322211111 1        1677888887777643 34456677


Q ss_pred             CCCCEEEccCCCCCCCCCccccCCCCCcEEEccCC-CCCCC-cchhccCCCCCCEEEccCCc-CCCCCCCCCCCcCCCCc
Q 047519          518 CNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNN-QINDN-FPNWLEILPELQVLILRSNR-FWGPIGDNTTIVPFPRF  594 (892)
Q Consensus       518 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L  594 (892)
                      ++|++|++++|.+++..+..+..+++|++|++++| .+++. +......+++|++|+++++. ++............+.|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            88888888888877666677777888888888875 45432 12223457778888887753 22110000000223567


Q ss_pred             cEEEcCCCC--CcCcCCcchhhhhhhhhcccCCCccccccCCCCCCCccceEEEEEccchhhHHHhhhhheeeecCCC-c
Q 047519          595 RIIDLSHNE--FTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNSSNYYESIILTIKGIDIQIERILTIFMTIDLSSN-K  671 (892)
Q Consensus       595 ~~L~Ls~N~--l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N-~  671 (892)
                      +.|+++++.  ++..   .    +                                    ..+...+++|+.||+++| .
T Consensus       151 ~~L~l~~~~~~i~~~---~----l------------------------------------~~l~~~~~~L~~L~L~~~~~  187 (284)
T d2astb2         151 TQLNLSGYRKNLQKS---D----L------------------------------------STLVRRCPNLVHLDLSDSVM  187 (284)
T ss_dssp             CEEECCSCGGGSCHH---H----H------------------------------------HHHHHHCTTCSEEECTTCTT
T ss_pred             chhhhcccccccccc---c----c------------------------------------cccccccccccccccccccC
Confidence            777776542  2210   0    0                                    011223567888888875 4


Q ss_pred             CCCCChhhhcCccccccccccCC-CCCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519          672 FQGGIPEVVGKLNLLKGLNNISH-NNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       672 l~~~~p~~~~~l~~L~~L~~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      +++..+..+.++++|++|+ +++ +.+++.....++++++|+.|+++++--.+.++.....++.|   .+..+++++..|
T Consensus       188 itd~~~~~l~~~~~L~~L~-L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~  263 (284)
T d2astb2         188 LKNDCFQEFFQLNYLQHLS-LSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIAR  263 (284)
T ss_dssp             CCGGGGGGGGGCTTCCEEE-CTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTC
T ss_pred             CCchhhhhhcccCcCCEEE-CCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCC
Confidence            6766777778888888887 888 46776666677788888888888772222222222334444   456667765443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.8e-15  Score=152.11  Aligned_cols=61  Identities=8%  Similarity=-0.192  Sum_probs=34.6

Q ss_pred             cCCCCCcEEEccCC-CCCcCCCccccCCCCCcEEecCccccc-cceeecc-chhhhhhccCCCCCcCEEEccCC
Q 047519          279 GDLDKRRSITGYVF-NFAGGPINWKSTLQSTVVLSTTEAEYM-AITKAVK-EAIWLQVFVRGRRHYAEPHFSSN  349 (892)
Q Consensus       279 ~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~~~~n-~l~~~~p-~l~~l~l~~~~l~~L~~L~Ls~n  349 (892)
                      .++++|++|++++| .+++..+..+.++++|++|+++   +| .++.... .+       +++++|++|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~---~C~~i~~~~l~~L-------~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS---RCYDIIPETLLEL-------GEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT---TCTTCCGGGGGGG-------GGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECC---CCCCCChHHHHHH-------hcCCCCCEEeeeCC
Confidence            44566666666654 3454555556666666666666   54 3333332 45       55666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=9.6e-13  Score=117.60  Aligned_cols=85  Identities=29%  Similarity=0.365  Sum_probs=75.5

Q ss_pred             hhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCC-ccccCCCCCCCE
Q 047519          659 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSV  737 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~  737 (892)
                      ++.|++||+++|+|+ .+|..++.+++|+.|+ +++|+|++ +| .++++++|++|++++|+++... +..+..+++|++
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~-l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ-ASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE-CCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhcccccc-cccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            678999999999998 6788899999999999 99999994 55 4899999999999999998543 357899999999


Q ss_pred             EECCCCcCcc
Q 047519          738 LNLSYNQFEG  747 (892)
Q Consensus       738 L~ls~N~l~g  747 (892)
                      |++++|++++
T Consensus        95 L~l~~N~i~~  104 (124)
T d1dcea3          95 LNLQGNSLCQ  104 (124)
T ss_dssp             EECTTSGGGG
T ss_pred             EECCCCcCCc
Confidence            9999999984

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.34  E-value=3.5e-14  Score=152.65  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             hhhheeeecCCCcCCCC----ChhhhcCccccccccccCCCCCCCCcc----hhccC--CCCCCeeeCCCCcCCCC----
Q 047519          659 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNNISHNNLTGDIP----SLLRN--LTEVESLDLSSNMLVGH----  724 (892)
Q Consensus       659 l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~~Ls~N~l~~~ip----~~l~~--l~~L~~L~Ls~N~l~~~----  724 (892)
                      .+.|+.|+|++|.++..    +...+..++.|++|+ |++|.|++.-.    ..+..  .+.|++||+++|+|+..    
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~-Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG-LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE-CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhh-hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            34455555555555421    233445556666666 66666654322    22222  34577777777776532    


Q ss_pred             CccccC-CCCCCCEEECCCCcCc
Q 047519          725 IPTQLT-SLKYLSVLNLSYNQFE  746 (892)
Q Consensus       725 ip~~l~-~l~~L~~L~ls~N~l~  746 (892)
                      +...+. +++.|++|++++|++.
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHccCCCCCEEECCCCcCC
Confidence            222232 4567777777777775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.33  E-value=1.8e-13  Score=147.05  Aligned_cols=21  Identities=14%  Similarity=-0.002  Sum_probs=12.5

Q ss_pred             CCcCcCCCCCCeEeCCCCCCc
Q 047519          108 SSGFSQLRSLTLLNLSSSNFM  128 (892)
Q Consensus       108 p~~~~~l~~L~~L~Ls~n~~~  128 (892)
                      ...+.....|+.|+|++|.+.
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~   44 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIG   44 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEEC
T ss_pred             HHHHhhCCCCCEEECcCCcCC
Confidence            344555666666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.5e-12  Score=113.16  Aligned_cols=105  Identities=28%  Similarity=0.433  Sum_probs=80.9

Q ss_pred             cEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcchhccCCCCCCEEEccCC
Q 047519          497 KVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFPNWLEILPELQVLILRSN  576 (892)
Q Consensus       497 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N  576 (892)
                      ++|++++|+++. ++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|+|++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            467788888873 33 3778888999999999888 567778888899999999999887 34 4788889999999999


Q ss_pred             cCCCCCCCCCCCcCCCCccEEEcCCCCCcCc
Q 047519          577 RFWGPIGDNTTIVPFPRFRIIDLSHNEFTGV  607 (892)
Q Consensus       577 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  607 (892)
                      ++..... ...+..+++|++|++++|++++.
T Consensus        76 ~i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAA-IQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSST-TGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCC-chhhcCCCCCCEEECCCCcCCcC
Confidence            8865432 22237788899999999988743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.1e-12  Score=120.22  Aligned_cols=125  Identities=19%  Similarity=0.280  Sum_probs=74.3

Q ss_pred             CCCCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCcCCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCC
Q 047519          336 RGRRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNRLSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPN  414 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~  414 (892)
                      .+..++++|+|++|+|+ .++..+..+++|+.|++++|.|+ .++  .+..+++|++|++++|  .+....+... .+++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N--~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNN--RICRIGEGLDQALPD   88 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSS--CCCEECSCHHHHCTT
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccc--cccCCCccccccccc
Confidence            45556667777777766 34555556677777777777766 333  3566677777777777  3333222222 4666


Q ss_pred             ccEEEccCCCCCCcch--hhhCCCCccEEEccCCCCCCCC---chhhhhhCCCcccEEE
Q 047519          415 LFGLGLSACNISEFPD--ILRTLHQLQWFNLSKNRIHGRI---SSWMWDLGITALYYLD  468 (892)
Q Consensus       415 L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~~~L~~L~  468 (892)
                      |++|++++|+++.+++  .+..+++|++|++++|.++...   +..+..+  ++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~l--p~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV--PQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC--TTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHC--CCcCeeC
Confidence            7777777776665543  4666677777777777665322   1234444  6666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.9e-12  Score=120.48  Aligned_cols=109  Identities=19%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             hCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCCCCcccEEECCCCccCccccc
Q 047519          433 RTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKISQ  512 (892)
Q Consensus       433 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~~~~L~~L~L~~n~l~~~~~~  512 (892)
                      .+..++++|+|++|+|+. ++..+..+  ++|+.|++++|.++...  .+..+.        +|++|++++|+++...+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~-i~~~~~~l--~~L~~L~Ls~N~i~~l~--~~~~l~--------~L~~L~ls~N~i~~l~~~   81 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV-IENLGATL--DQFDAIDFSDNEIRKLD--GFPLLR--------RLKTLLVNNNRICRIGEG   81 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGT--TCCSEEECCSSCCCEEC--CCCCCS--------SCCEEECCSSCCCEECSC
T ss_pred             cCcCcCcEEECCCCCCCc-cCcccccc--ccCCEEECCCCCCCccC--CcccCc--------chhhhhcccccccCCCcc
Confidence            345556666666666653 34333334  55566666555554331  122222        444444444444433333


Q ss_pred             cccCCCCCCEEEccCCCCCCCCC--ccccCCCCCcEEEccCCCCC
Q 047519          513 KFVNSCNLTNLNLNGNRLEGPLP--LSLVNCHHLEVLDVGNNQIN  555 (892)
Q Consensus       513 ~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~  555 (892)
                      .+..+++|++|++++|+++. ++  ..+..+++|++|++++|.++
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            33344445555555554442 11  23344444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.2e-11  Score=110.87  Aligned_cols=108  Identities=21%  Similarity=0.147  Sum_probs=76.9

Q ss_pred             heeeecCCCcCCCCChhhhcCccccccccccCCC-CCCCCcchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEEC
Q 047519          662 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHN-NLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL  740 (892)
Q Consensus       662 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~l  740 (892)
                      .+.++.+++.+. .+|..+..+++|++|+ +++| .|+...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+|
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~-l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELY-IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEE-CCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeee-cCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            456777777777 5677777778888887 7655 477555667888888888888888888776777888888888888


Q ss_pred             CCCcCcccCCCC-CCCCcccCCccCCCCCCCCC
Q 047519          741 SYNQFEGPIPQG-SQFNTFRNDSYVGNSGLCGF  772 (892)
Q Consensus       741 s~N~l~g~iP~~-~~~~~~~~~~~~gN~~lc~~  772 (892)
                      ++|+|+ .+|.+ .....+....+.|||+-|++
T Consensus        88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          88 SFNALE-SLSWKTVQGLSLQELVLSGNPLHCSC  119 (156)
T ss_dssp             CSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             cCCCCc-ccChhhhccccccccccCCCcccCCc
Confidence            888887 44443 23334556667777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=1.7e-12  Score=126.66  Aligned_cols=130  Identities=22%  Similarity=0.221  Sum_probs=78.8

Q ss_pred             cchhccCCCCCCEEEccCCcCCCCCCCCCCCcCCCCccEEEcCCCCCcCcCCcchhhhhhhhhcccCCCccccccCCCCC
Q 047519          558 FPNWLEILPELQVLILRSNRFWGPIGDNTTIVPFPRFRIIDLSHNEFTGVLPTGYLDNFKAMMHGNNNSVEVDYMTPLNS  637 (892)
Q Consensus       558 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~l~~~~~~~~~~~~~~~  637 (892)
                      +|..+..+++|++|+|++|+++. ++ .+  ..+++|++|++++|+++ .+|.. .                        
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l--~~l~~L~~L~Ls~N~i~-~i~~~-~------------------------   89 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIENL-D------------------------   89 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CH--HHHTTCCEEECCEEEEC-SCSSH-H------------------------
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cc--cCCccccChhhcccccc-ccccc-c------------------------
Confidence            44556666666666666666643 22 22  55666777777777665 23311 0                        


Q ss_pred             CCccceEEEEEccchhhHHHhhhhheeeecCCCcCCCCChhhhcCccccccccccCCCCCCCCcc-hhccCCCCCCeeeC
Q 047519          638 SNYYESIILTIKGIDIQIERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNNISHNNLTGDIP-SLLRNLTEVESLDL  716 (892)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~~Ls~N~l~~~ip-~~l~~l~~L~~L~L  716 (892)
                                         ..++.|+.|++++|+++. + ..+..+++|+.|+ +++|+|+.... ..++++++|+.|+|
T Consensus        90 -------------------~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~-L~~N~i~~~~~~~~l~~l~~L~~L~L  147 (198)
T d1m9la_          90 -------------------AVADTLEELWISYNQIAS-L-SGIEKLVNLRVLY-MSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             -------------------HHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEE-ESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             -------------------cccccccccccccccccc-c-ccccccccccccc-cccchhccccccccccCCCccceeec
Confidence                               114567777777777773 3 3466777777777 77777773221 45677777777777


Q ss_pred             CCCcCCCCCccc----------cCCCCCCCEEE
Q 047519          717 SSNMLVGHIPTQ----------LTSLKYLSVLN  739 (892)
Q Consensus       717 s~N~l~~~ip~~----------l~~l~~L~~L~  739 (892)
                      ++|++....+..          +..+++|+.||
T Consensus       148 ~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777765433321          45567777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.9e-12  Score=123.96  Aligned_cols=127  Identities=26%  Similarity=0.292  Sum_probs=74.0

Q ss_pred             ccEEEccCC--CCCCcchhhhCCCCccEEEccCCCCCCCCchhhhhhCCCcccEEEccCCCCCCCCCCCCCCCCeeecCC
Q 047519          415 LFGLGLSAC--NISEFPDILRTLHQLQWFNLSKNRIHGRISSWMWDLGITALYYLDLSNNFLTNIEYFPPTNMTQLNFDS  492 (892)
Q Consensus       415 L~~L~L~~n--~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~l~~  492 (892)
                      ++.+++.+.  .++.+|..+..+++|++|+|++|+|+. ++ .+..+  ++|+.|++++|.++.+.+             
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l--~~L~~L~Ls~N~i~~i~~-------------   87 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGM--ENLRILSLGRNLIKKIEN-------------   87 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHH--TTCCEEECCEEEECSCSS-------------
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cc-cccCC--ccccChhhcccccccccc-------------
Confidence            444455443  355677788888888888888888874 33 36666  788888888877664321             


Q ss_pred             CCcccEEECCCCccCccccccccCCCCCCEEEccCCCCCCCCCccccCCCCCcEEEccCCCCCCCcc-hhccCCCCCCEE
Q 047519          493 NLTHKVLDMRMNNFNGKISQKFVNSCNLTNLNLNGNRLEGPLPLSLVNCHHLEVLDVGNNQINDNFP-NWLEILPELQVL  571 (892)
Q Consensus       493 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L  571 (892)
                                          .+..+++|+.|++++|+++. + ..+..+++|++|++++|+|+.... ..+..+++|+.|
T Consensus        88 --------------------~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          88 --------------------LDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             --------------------HHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             --------------------cccccccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCcccee
Confidence                                11122345555555555552 2 234455556666666666554211 345556666666


Q ss_pred             EccCCcCCC
Q 047519          572 ILRSNRFWG  580 (892)
Q Consensus       572 ~L~~N~l~~  580 (892)
                      ++++|++..
T Consensus       146 ~L~~N~l~~  154 (198)
T d1m9la_         146 LLAGNPLYN  154 (198)
T ss_dssp             EECSSHHHH
T ss_pred             ecCCCcccc
Confidence            666665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.4e-09  Score=99.37  Aligned_cols=108  Identities=21%  Similarity=0.117  Sum_probs=75.0

Q ss_pred             CCCcCEEEccCCcCCcCCCccccCCCCCCEEECcCCc-CCCccChhhcCCCCCCCEEEcccCCCCCCccccCCC-CCCCc
Q 047519          338 RRHYAEPHFSSNQLSGSIPSSVYELENLILLRLPSNR-LSGTTELYDFAKLKNLKWLFVSNNRLSLSTKLKVNS-SFPNL  415 (892)
Q Consensus       338 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L  415 (892)
                      +...+.++.+++.+. ..|..+..+++|++|++++|+ ++ .++...|.++++|+.|++++|  .+....+..+ .+++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N--~l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKS--GLRFVAPDAFHFTPRL   82 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSS--CCCEECTTGGGSCSCC
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeecc--ccCCcccccccccccc
Confidence            344556777777766 456667777888888886554 66 455467778888888888888  4444444444 67777


Q ss_pred             cEEEccCCCCCCcchhhhCCCCccEEEccCCCCC
Q 047519          416 FGLGLSACNISEFPDILRTLHQLQWFNLSKNRIH  449 (892)
Q Consensus       416 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~  449 (892)
                      ++|+|++|+++.+|.......+|+.|+|++|.+.
T Consensus        83 ~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cceeccCCCCcccChhhhccccccccccCCCccc
Confidence            7778877888777765555557888888888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-06  Score=81.07  Aligned_cols=82  Identities=24%  Similarity=0.193  Sum_probs=61.1

Q ss_pred             HhhhhheeeecCCCcCCCCC--hhhhcCccccccccccCCCCCCCCcchhccCCCCCCeeeCCCCcCCCCCccc------
Q 047519          657 RILTIFMTIDLSSNKFQGGI--PEVVGKLNLLKGLNNISHNNLTGDIPSLLRNLTEVESLDLSSNMLVGHIPTQ------  728 (892)
Q Consensus       657 ~~l~~L~~LdLs~N~l~~~~--p~~~~~l~~L~~L~~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~------  728 (892)
                      ..++.|++|||++|+|+..-  +..+..+++|+.|+ |++|+|+...+-.+.+...|+.|++++|.++......      
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~-Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN-LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC-CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc-cccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34778999999999998543  45577888999998 9999998544434445567889999999988665432      


Q ss_pred             -cCCCCCCCEEE
Q 047519          729 -LTSLKYLSVLN  739 (892)
Q Consensus       729 -l~~l~~L~~L~  739 (892)
                       +..+++|++||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence             56788888886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.5e-07  Score=84.99  Aligned_cols=74  Identities=22%  Similarity=0.195  Sum_probs=57.5

Q ss_pred             ChhhhcCccccccccccCCCCCCCC--cchhccCCCCCCeeeCCCCcCCCCCccccCCCCCCCEEECCCCcCcccCC
Q 047519          676 IPEVVGKLNLLKGLNNISHNNLTGD--IPSLLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  750 (892)
Q Consensus       676 ~p~~~~~l~~L~~L~~Ls~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP  750 (892)
                      ++..+..++.|++|+ |++|+|+..  ++..+..+++|+.|||++|+|+...+-.+.....|+.|++++|++++...
T Consensus        57 l~~~~~~~~~L~~L~-Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          57 LRIIEENIPELLSLN-LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHCTTCCCCC-CCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hHHHHHhCCCCCEee-CCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            344456788999998 999999954  34667889999999999999995544344455679999999999986554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.35  E-value=6.7e-05  Score=69.34  Aligned_cols=120  Identities=6%  Similarity=-0.037  Sum_probs=60.9

Q ss_pred             CCCCCCeEecCCC-CCCCCC---CCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhc
Q 047519           88 FLPHIRKLNLAFN-DFNYSE---ISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKT  163 (892)
Q Consensus        88 ~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~  163 (892)
                      +-++|++|+|+++ .++...   +-..+...++|++|+|++|.+...-...++                      ..+. 
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la----------------------~~L~-   69 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI----------------------ELIE-   69 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH----------------------HHHH-
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHh----------------------hhhh-
Confidence            3467788888764 354321   223456667777777777776532221111                      1222 


Q ss_pred             ccCCCCCCCEEecCCccCccccccc-----CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCCC
Q 047519          164 TFLHDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKKI  238 (892)
Q Consensus       164 ~~~~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~L  238 (892)
                         ..+.|++|+|++|.+.......     ...  ++|++|++++|  .+...-......+.         ..+...+.|
T Consensus        70 ---~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n--~sL~~L~l~~n--~~~~~g~~~~~~l~---------~~L~~n~sL  133 (167)
T d1pgva_          70 ---TSPSLRVLNVESNFLTPELLARLLRSTLVT--QSIVEFKADNQ--RQSVLGNQVEMDMM---------MAIEENESL  133 (167)
T ss_dssp             ---HCSSCCEEECCSSBCCHHHHHHHHHHTTTT--CCCSEEECCCC--SSCCCCHHHHHHHH---------HHHHHCSSC
T ss_pred             ---hcccccceeeehhhcchHHHHHHHHHHHhC--CcCCEEECCCC--cCCCccHHHHHHHH---------HHHHhCCCc
Confidence               4555666666666555433221     233  55666666665  43322121111111         344556677


Q ss_pred             CEEEcccC
Q 047519          239 LGMEICRN  246 (892)
Q Consensus       239 ~~L~L~~n  246 (892)
                      +.|+++.+
T Consensus       134 ~~l~l~~~  141 (167)
T d1pgva_         134 LRVGISFA  141 (167)
T ss_dssp             CEEECCCC
T ss_pred             cEeeCcCC
Confidence            77776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.19  E-value=0.00016  Score=66.66  Aligned_cols=63  Identities=13%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             CCCCCcCEEEccCC-cCCcC----CCccccCCCCCCEEECcCCcCCCccC---hhhcCCCCCCCEEEcccC
Q 047519          336 RGRRHYAEPHFSSN-QLSGS----IPSSVYELENLILLRLPSNRLSGTTE---LYDFAKLKNLKWLFVSNN  398 (892)
Q Consensus       336 ~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~Ls~n  398 (892)
                      .+.++|++|+|+++ .++..    +...+...+.|++|+|++|.+.....   ...+...+.|++|+|++|
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence            44566677777653 34321    22234455566666666665542110   012233445555555555

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.40  E-value=0.00072  Score=62.03  Aligned_cols=117  Identities=7%  Similarity=0.016  Sum_probs=58.1

Q ss_pred             CCCCCCeEecCC-CCCCCCC---CCCcCcCCCCCCeEeCCCCCCccccCCCCCcccCCCCceecCCcccCCcchhhhhhc
Q 047519           88 FLPHIRKLNLAF-NDFNYSE---ISSGFSQLRSLTLLNLSSSNFMGSIPASIDLINVSRLSTNYLPIFAFSDCFQLDVKT  163 (892)
Q Consensus        88 ~l~~L~~L~Ls~-n~l~~~~---~p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~~~L~~L~~L~Ls~~~~~~~~p~~l~~  163 (892)
                      +-+.|++|+|++ +.++...   +-.++...++|++|+|++|.+...                          ....++.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~--------------------------~~~~L~~   68 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP--------------------------VAFALAE   68 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH--------------------------HHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHH--------------------------HHHHHHH
Confidence            345666777765 3343321   223344566666666666665432                          1112222


Q ss_pred             ccCCCCCCCEEecCCccCccccccc-----CCCCCCcccEEEcc--CCCCcCccCChhHHHHhhhcccccccccccccCC
Q 047519          164 TFLHDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLH--VDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAK  236 (892)
Q Consensus       164 ~~~~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls--~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~  236 (892)
                      .++..+.++.+++++|.+.......     ...  ++|+.++|+  +|  .+...   ....+.         ..+.+.+
T Consensus        69 ~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~--~~L~~l~L~l~~n--~i~~~---~~~~La---------~~L~~n~  132 (166)
T d1io0a_          69 MLKVNNTLKSLNVESNFISGSGILALVEALQSN--TSLIELRIDNQSQ--PLGNN---VEMEIA---------NMLEKNT  132 (166)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC--SSCCEEECCCCSS--CCCHH---HHHHHH---------HHHHHCS
T ss_pred             HHhhcccchhhhhccccccchhHHHHHHHHHhC--ccccEEeeccCCC--cCcHH---HHHHHH---------HHHHhCC
Confidence            2225566666666666554433211     334  566655554  33  34321   111111         4455677


Q ss_pred             CCCEEEcccC
Q 047519          237 KILGMEICRN  246 (892)
Q Consensus       237 ~L~~L~L~~n  246 (892)
                      +|+.|+++.+
T Consensus       133 ~L~~L~l~~~  142 (166)
T d1io0a_         133 TLLKFGYHFT  142 (166)
T ss_dssp             SCCEEECCCS
T ss_pred             CcCEEeCcCC
Confidence            7888877665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.32  E-value=0.00056  Score=62.81  Aligned_cols=97  Identities=6%  Similarity=-0.016  Sum_probs=61.4

Q ss_pred             cccCCCCCCCEEecCCccCccccccc-----CCCCCCcccEEEccCCCCcCccCChhHHHHhhhcccccccccccccCCC
Q 047519          163 TTFLHDDLEEEIYMTQLDGFKVAEKE-----NWLQEESFIYLLLHVDDMEIASKSKDEIEKLKTQLNQEFEMKDLGEAKK  237 (892)
Q Consensus       163 ~~~~~l~~L~~L~L~~~~~~~~~~~~-----~~l~~~~L~~L~Ls~n~~~l~~~~p~~i~~l~~~~~~~~p~~~l~~l~~  237 (892)
                      .+++..++|++|++++|.+.......     ...  ++++.+++++|  .+...   ++..+.         ..+...+.
T Consensus        40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~--~~l~~l~l~~~--~~~~~---g~~~l~---------~~l~~~~~  103 (166)
T d1io0a_          40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN--NTLKSLNVESN--FISGS---GILALV---------EALQSNTS  103 (166)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC--SSCCEEECCSS--CCCHH---HHHHHH---------HGGGGCSS
T ss_pred             HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhc--ccchhhhhccc--cccch---hHHHHH---------HHHHhCcc
Confidence            34448889999999999876654332     455  88999999988  66533   222222         56777888


Q ss_pred             CCEEEcc--cCCCCCcCCccccCCCCcceecccceeecChhhhcCCCCCcEEEccCCC
Q 047519          238 ILGMEIC--RNRTCGKTMDVGLLFEQDDTLGQSVNGYVDSDYIGDLDKRRSITGYVFN  293 (892)
Q Consensus       238 L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~~~~~~~~p~~~l~~l~~L~~L~L~~n~  293 (892)
                      |+.++|.  +|.+....                 ...+.. .+...+.|++|++..+.
T Consensus       104 L~~l~L~l~~n~i~~~~-----------------~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         104 LIELRIDNQSQPLGNNV-----------------EMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CCEEECCCCSSCCCHHH-----------------HHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             ccEEeeccCCCcCcHHH-----------------HHHHHH-HHHhCCCcCEEeCcCCC
Confidence            8887665  34332211                 112233 56677888888887654