Citrus Sinensis ID: 047520

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVGASCKRRDIL
Secondary Structure (PSIPRED)
cEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccHHHcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHcccHHHcccc
Coil and Loop (DISEMBL)
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLrkqgydgasniQGEFNAIVAVAKKHDQINSFFNVIANVINVVGasckrrdil
Flexible Loop (DISEMBL)
mvvalryadkngyvfERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVvgasckrrdil
Low Complexity Region (SEG)
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQInsffnvianvinvvgasCKRRDIL
Disordered region (IsUnstruct)
**VALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVGASC******
Disordered Region (DISOPRED)
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVGASCKRRDIL
Disordered Region (DISEMBL)
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVGASCKRRDIL
Disordered Region (DISPRO)
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVGASCK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVAVAKKHDQINSFFNVIANVINVVGASCKRRDIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
224126313	788	predicted protein [Populus trichocarpa]	1.0	0.129	0.496	2e-27
357490617	892	Zinc finger MYM-type protein [Medicago t	1.0	0.114	0.480	2e-26
15233987	664	uncharacterized protein [Arabidopsis tha	0.980	0.150	0.542	1e-25
15221982	769	TTF-type zinc finger protein with HAT di	0.980	0.130	0.48	1e-24
8954063	811	Contains similarity to a transposable el	0.980	0.123	0.48	2e-24
357439181	665	hypothetical protein MTR_1g040620 [Medic	1.0	0.153	0.488	5e-24
15230070	536	General transcription factor 2-related z	0.980	0.186	0.464	3e-23
15230069	505	General transcription factor 2-related z	0.980	0.198	0.456	2e-22
11994527	571	unnamed protein product [Arabidopsis tha	0.921	0.164	0.504	5e-22
15222347	496	General transcription factor 2-related z	0.980	0.201	0.456	1e-21

>gi|224126313|ref|XP_002319808.1| predicted protein [Populus trichocarpa] gi|222858184|gb|EEE95731.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 25/127 (19%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V LRY D NG++ ERF+G +HV  TTA SLK A++ LFSK+GLSISRLR QGYDGASN
Sbjct: 298 MAVVLRYVDNNGHIIERFLGIQHVRDTTASSLKAAIEALFSKHGLSISRLRGQGYDGASN 357

Query: 61  IQGEFNA-------------------------IVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++GEFN                          +VAV KKH+++   FN I+++IN+VGAS
Sbjct: 358 MRGEFNGLKALILNSNPSAYYVHCFAHRLQLTLVAVTKKHNEVGDVFNFISSIINIVGAS 417

Query: 96  CKRRDIL 102
           CKR +++
Sbjct: 418 CKRMEVI 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490617|ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago truncatula] gi|355516931|gb|AES98554.1| Zinc finger MYM-type protein [Medicago truncatula]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 25/127 (19%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           MVV LRY +K G + ERF+G  HVT TTA+SLK A+D+LF K+ L+ SR+R QGYDGASN
Sbjct: 401 MVVVLRYVNKYGCIVERFLGIVHVTTTTAMSLKIAIDELFCKHSLTTSRIRGQGYDGASN 460

Query: 61  IQGEFN-------------------------AIVAVAKKHDQINSFFNVIANVINVVGAS 95
           +QG+F+                         A++A+A+ H Q+NS F+VI+ + NVVG S
Sbjct: 461 MQGQFSGLKTLILRENPCAFYVHCFAHQLQLALIAIARDHLQVNSLFSVISTLTNVVGGS 520

Query: 96  CKRRDIL 102
           CKR D+L
Sbjct: 521 CKRTDML 527

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233987|ref|NP_192704.1| uncharacterized protein [Arabidopsis thaliana] gi|4538896|emb|CAB39633.1| putative protein [Arabidopsis thaliana] gi|7267661|emb|CAB78089.1| putative protein [Arabidopsis thaliana] gi|332657378|gb|AEE82778.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 5/105 (4%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR QGYDGASN
Sbjct: 244 MTVVFRFVDKYGVVKERFIGVIHVKETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASN 303

Query: 61  IQGEFNAIVA-----VAKKHDQINSFFNVIANVINVVGASCKRRD 100
           ++GEFN + +     +AKKH ++  FF++I+ ++NVVGASC R+D
Sbjct: 304 MKGEFNGLRSLILKEIAKKHVEVGEFFDMISVLLNVVGASCTRKD 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221982|ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana]

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 25/125 (20%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR QGYDGASN
Sbjct: 280 MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASN 339

Query: 61  IQGEFNA-------------------------IVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++GEFN                          ++AVAKKH ++  FF +I+ ++NVVGAS
Sbjct: 340 MKGEFNGLRSLILKESSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGAS 399

Query: 96  CKRRD 100
           CKR+D
Sbjct: 400 CKRKD 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954063|gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for transposase from Ipomoea purpurea gb|4063769 and is a member of the transmembrane 4 family PF|00335 [Arabidopsis thaliana]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 25/125 (20%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR QGYDGASN
Sbjct: 322 MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASN 381

Query: 61  IQGEFNA-------------------------IVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++GEFN                          ++AVAKKH ++  FF +I+ ++NVVGAS
Sbjct: 382 MKGEFNGLRSLILKESSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGAS 441

Query: 96  CKRRD 100
           CKR+D
Sbjct: 442 CKRKD 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439181|ref|XP_003589867.1| hypothetical protein MTR_1g040620 [Medicago truncatula] gi|355478915|gb|AES60118.1| hypothetical protein MTR_1g040620 [Medicago truncatula]

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 25/127 (19%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V LRY DK G+V +RF+G  HV  TT+ISLK  L+ +F+ Y LS SR+R QGYDGASN
Sbjct: 302 MAVVLRYVDKKGHVIKRFLGVVHVENTTSISLKVELESMFANYNLSWSRVRGQGYDGASN 361

Query: 61  IQGEFN-------------------------AIVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++GEFN                         A+VAVA+K D I  FF  + NV N+VG S
Sbjct: 362 MRGEFNGLKSLILKENKFAFYVHCFAHQLQLALVAVARKLDDIAWFFMAVNNVSNMVGGS 421

Query: 96  CKRRDIL 102
           CKRRD+L
Sbjct: 422 CKRRDML 428

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230070|ref|NP_189621.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332644086|gb|AEE77607.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 25/125 (20%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR +GYDGASN
Sbjct: 47  MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASN 106

Query: 61  IQGEFNA-------------------------IVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++G+FN                          ++AVAKKH ++  FF +I+ ++NVVGAS
Sbjct: 107 MKGKFNGLRSLILKENSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGAS 166

Query: 96  CKRRD 100
           CKR+D
Sbjct: 167 CKRKD 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230069|ref|NP_189620.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332644085|gb|AEE77606.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 25/125 (20%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR +GYDGASN
Sbjct: 148 MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASN 207

Query: 61  IQGEFNA-------------------------IVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++G+FN                          ++AVAKKH ++  FF +I+ ++NVVGA 
Sbjct: 208 MKGKFNGLRSLILKENSSAYYVHCFAHQLQLVVMAVAKKHVEVGEFFYMISVLLNVVGAF 267

Query: 96  CKRRD 100
           CKR+D
Sbjct: 268 CKRKD 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994527|dbj|BAB02591.1| unnamed protein product [Arabidopsis thaliana]

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/119 (50%), Positives = 74/119 (62%), Gaps = 25/119 (21%)

Query: 7   YADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN 66
           + DK+G V ERFIG  HV  T   SLK A+D LF+K GLSI +LR QGYDGASN++GEFN
Sbjct: 219 FVDKHGTVKERFIGLIHVKKTFFASLKCAIDSLFAKLGLSIKQLRGQGYDGASNMKGEFN 278

Query: 67  A-------------------------IVAVAKKHDQINSFFNVIANVINVVGASCKRRD 100
                                     +VAVAKKH +I  FF++I+ +INVVGASCKR+D
Sbjct: 279 GLRSLILRENSSAYYIHCFAHQLQLVVVAVAKKHFEIGDFFDMISVLINVVGASCKRKD 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222347|ref|NP_174954.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332193792|gb|AEE31913.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 25/125 (20%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V  R+ DK+G V ERFIG  HV  T++ SLK A+D LF+K GLS+ +LR QGYDGA+N
Sbjct: 105 MAVVFRFVDKHGTVKERFIGLIHVKETSSASLKCAIDSLFAKRGLSMKQLRGQGYDGANN 164

Query: 61  IQGEFN-------------------------AIVAVAKKHDQINSFFNVIANVINVVGAS 95
           ++GEFN                          +VAVAKK  ++  FF++I+ ++NVVGAS
Sbjct: 165 MKGEFNWLRSLILRENSSAYYIHCFAHQLQLVVVAVAKKQFEVGDFFDMISALLNVVGAS 224

Query: 96  CKRRD 100
           CK +D
Sbjct: 225 CKGKD 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
TAIR|locus:2202165	769	AT1G19260 [Arabidopsis thalian	0.725	0.096	0.567	4.8e-19
TAIR|locus:2829839	505	AT3G29763 "AT3G29763" [Arabido	0.745	0.150	0.526	7.3e-19
TAIR|locus:2829849	536	AT3G29765 [Arabidopsis thalian	0.745	0.141	0.526	7.4e-19
TAIR|locus:2118430	664	AT4G09660 [Arabidopsis thalian	0.980	0.150	0.457	4.2e-18
TAIR|locus:4515102803	592	AT2G06541 [Arabidopsis thalian	0.666	0.114	0.558	9.8e-17
TAIR|locus:2033523	496	AT1G41920 "AT1G41920" [Arabido	0.647	0.133	0.590	2.5e-16
TAIR|locus:2036700	206	AT1G42710 "AT1G42710" [Arabido	0.578	0.286	0.559	3.1e-12
TAIR|locus:5019474775	393	AT3G31402 "AT3G31402" [Arabido	0.558	0.145	0.543	2e-11
TAIR|locus:2093847	522	AT3G29450 "AT3G29450" [Arabido	0.372	0.072	0.684	3.1e-11
UNIPROTKB|E1BC73	1130	ZMYM1 "Uncharacterized protein	0.725	0.065	0.324	0.0001

TAIR|locus:2202165 AT1G19260 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
 Identities = 42/74 (56%), Positives = 55/74 (74%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
             M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR QGYDGASN
Sbjct:   280 MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASN 339

Query:    61 IQGEFNAIVAVAKK 74
             ++GEFN + ++  K
Sbjct:   340 MKGEFNGLRSLILK 353

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2829839 AT3G29763 "AT3G29763" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.3e-19, Sum P(2) = 7.3e-19
 Identities = 40/76 (52%), Positives = 56/76 (73%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
             M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR +GYDGASN
Sbjct:   148 MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASN 207

Query:    61 IQGEFNAIVAVAKKHD 76
             ++G+FN + ++  K +
Sbjct:   208 MKGKFNGLRSLILKEN 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2829849 AT3G29765 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.4e-19, Sum P(2) = 7.4e-19
 Identities = 40/76 (52%), Positives = 56/76 (73%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
             M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR +GYDGASN
Sbjct:    47 MAVVFRFVDKYGVVKERFIGVIHVQETSSLSLKSAIDSLFAKYGLSLKKLRGKGYDGASN 106

Query:    61 IQGEFNAIVAVAKKHD 76
             ++G+FN + ++  K +
Sbjct:   107 MKGKFNGLRSLILKEN 122

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118430 AT4G09660 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 48/105 (45%), Positives = 64/105 (60%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
             M V  R+ DK G V ERFIG  HV  T+++SLK A+D LF+KYGLS+ +LR QGYDGASN
Sbjct:   244 MTVVFRFVDKYGVVKERFIGVIHVKETSSLSLKSAIDSLFAKYGLSLKKLRGQGYDGASN 303

Query:    61 IQGEFNAIVA-----VAKKHDQIXXXXXXXXXXXXXXXXXCKRRD 100
             ++GEFN + +     +AKKH ++                 C R+D
Sbjct:   304 MKGEFNGLRSLILKEIAKKHVEVGEFFDMISVLLNVVGASCTRKD 348

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102803 AT2G06541 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
             MVV  R+ DK+  V ERFIG  HV  T +  LK A+D LF+K+GLSI ++R Q YDGASN
Sbjct:   213 MVVVFRFVDKHATVKERFIGLIHVKETFSAFLKCAIDSLFAKHGLSIKQIRGQDYDGASN 272

Query:    61 IQGEFNAI 68
             ++GEFN +
Sbjct:   273 MKGEFNGL 280

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2033523 AT1G41920 "AT1G41920" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
             M V  R+ DK+G V ERFIG  HV  T++ SLK A+D LF+K GLS+ +LR QGYDGA+N
Sbjct:   105 MAVVFRFVDKHGTVKERFIGLIHVKETSSASLKCAIDSLFAKRGLSMKQLRGQGYDGANN 164

Query:    61 IQGEFN 66
             ++GEFN
Sbjct:   165 MKGEFN 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036700 AT1G42710 "AT1G42710" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/59 (55%), Positives = 42/59 (71%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGAS 59
             M V  R+ DK+G V ERFI   HV  T++ S+K A+D LF+KYGLS+  +R QGYDGAS
Sbjct:   122 MAVVFRFVDKSGTVKERFIEVVHVKETSSASVKSAIDDLFAKYGLSLKTVRGQGYDGAS 180

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474775 AT3G31402 "AT3G31402" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query:     1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDG 57
             M +  R+ DK+G V ERF+   HV  T+AISLK A+D LF+KY L+I + R QGYDG
Sbjct:   115 MTLVFRFFDKSGIVKERFLSIIHVKETSAISLKSAIDDLFAKYRLNIKKGRGQGYDG 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093847 AT3G29450 "AT3G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query:    31 SLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAI 68
             SLK A+D LF+K GLSI +LR QGYDGASN++GEFN +
Sbjct:   194 SLKCAIDSLFAKLGLSIKQLRGQGYDGASNMKGEFNGL 231

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BC73 ZMYM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 0.00010, P = 0.00010
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query:     3 VALRYADKNG---YVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGAS 59
             V +RY  K      + ERF+GF  V   T  SL  ++     + G+ ++++R Q YD  S
Sbjct:   651 VCVRYPQKTSKAVLIKERFLGFIDVEEMTGTSLHRSIKAYLQQIGVDLNKIRGQAYDSTS 710

Query:    60 NIQGEFNAIVAVAKKHD 76
             N +G+   I A  KK +
Sbjct:   711 NWKGKLKKIAAEFKKEE 727

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130851 hypothetical protein (788 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	102
pfam14291	179	pfam14291, DUF4371, Domain of unknown function (DU	1e-28

>gnl|CDD|222655 pfam14291, DUF4371, Domain of unknown function (DUF4371)

 Score =  101 bits (253), Expect = 1e-28
 Identities = 40/66 (60%), Positives = 52/66 (78%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN 60
           M V LRY DK G V ERF+G  HV  TT+++LK A+D L +K+GLS+S++R QGYDGASN
Sbjct: 113 MAVVLRYVDKKGQVKERFLGVVHVEETTSLTLKSAIDSLLAKHGLSLSKVRGQGYDGASN 172

Query: 61  IQGEFN 66
           ++GEFN
Sbjct: 173 MKGEFN 178

Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF14291	235	DUF4371: Domain of unknown function (DUF4371)	99.91
KOG1121	641	consensus Tam3-transposase (Ac family) [Replicatio	97.61
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	96.97

>PF14291 DUF4371: Domain of unknown function (DUF4371)

Probab=99.91  E-value=3.7e-25  Score=151.69  Aligned_cols=66  Identities=45%  Similarity=0.739  Sum_probs=64.1

Q ss_pred             CEEEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh
Q 047520            1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN   66 (102)
Q Consensus         1 l~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~   66 (102)
                      |+++||||++++.++|+||+|++++++||++|++.|++.|+++|||+++|+||+|||||+|+|+++
T Consensus       169 l~i~vRyv~~~~~i~E~Fl~f~~~~~~ta~~l~~~i~~~L~~~~l~~~~~~gq~yDgas~M~G~~~  234 (235)
T PF14291_consen  169 LSICVRYVDKDGKIKERFLGFVELEDTTAESLFNAIKDVLEKLGLDLSNCRGQCYDGASNMSGKHN  234 (235)
T ss_pred             hhheeeeeccCcceeeeeeeeeccCCccHHHHHHHHHHHHHHcCCCHHHcCcccccChHhheeccC
Confidence            689999999888999999999999999999999999999999999999999999999999999986

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]

Probab=97.61  E-value=0.00036  Score=53.80  Aligned_cols=99  Identities=15%  Similarity=0.309  Sum_probs=71.9

Q ss_pred             CEEEEEEEcCCCeEEEEeeeeEEcCCCChHHHHHHHHHHHHhcCCCccceeeeeecCCcc-----------------ccc
Q 047520            1 MVVALRYADKNGYVFERFIGFKHVTCTTAISLKEALDQLFSKYGLSISRLRKQGYDGASN-----------------IQG   63 (102)
Q Consensus         1 l~i~vryv~~~~~i~e~fl~~~~~~~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~-----------------m~g   63 (102)
                      +++..||+|.+|+++..+++|.-.+.++++.|+..+...+.+|+|. .++...+.|++..                 +.|
T Consensus       184 ~~~t~h~id~~~~l~~~il~~~~~~~~~~~~i~~~~~~~~~~~~i~-~kv~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~  262 (641)
T KOG1121|consen  184 MVLTAHYIDRDWELHNKILSFCIPPPHLGKALASVLNECLLEWGIE-KKVFSITVDNVNVSNIETLRDHLKSSNALLLLG  262 (641)
T ss_pred             EEEEEEEeccchHhhhheeeeecCCcchHHHHHHHHHHHHHhhChh-heEEEEeecccchhHHHHhhHHHhhcccceecc
Confidence            4688999999999999999999555799999999999999999998 7888899999221                 001


Q ss_pred             chh-------HHHHHHhhc--hhHHHHHHHHHHHHHHhhccchhhh
Q 047520           64 EFN-------AIVAVAKKH--DQINSFFNVIANVINVVGASCKRRD  100 (102)
Q Consensus        64 ~~~-------~v~~~~~~~--~~~~~~~~~~~~~~~~f~~S~kr~~  100 (102)
                      +..       .+...++..  ......+..+++.+.++..|..++.
T Consensus       263 ~~~~~~C~~~~~~~~v~~~l~~~~~~~l~~ir~~v~~vk~s~~~~~  308 (641)
T KOG1121|consen  263 KFFHVRCFAHILNLIVQEGLKEEFSSLLEKLRESVKYVKSSESRES  308 (641)
T ss_pred             eeeeeehhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Confidence            110       111111111  3455666778888888888877654

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=96.97  E-value=0.0015  Score=42.31  Aligned_cols=53  Identities=23%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             EEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchhHHHH
Q 047520           16 ERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFNAIVA   70 (102)
Q Consensus        16 e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~~v~~   70 (102)
                      .-|+.-++..  .+||+.|++.+.+.+++.|  .+|++.+.+|++++|.+.-..+.+
T Consensus        60 ~~Flksvd~s~~~~~a~~l~~ll~~vIeeVG--~~nVvqVVTDn~~~~~~a~~~L~~  114 (153)
T PF04937_consen   60 TVFLKSVDASSIIKTAEYLFELLDEVIEEVG--EENVVQVVTDNASNMKKAGKLLME  114 (153)
T ss_pred             cEEEEEEecccccccHHHHHHHHHHHHHHhh--hhhhhHHhccCchhHHHHHHHHHh
Confidence            4567777775  4899999999999999987  469999999999999887664443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2bw3_A	534	Transposase; DNA recombination, transposition; 2.0	99.63

>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B

Probab=99.63  E-value=1.8e-15  Score=111.90  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=85.8

Q ss_pred             CEEEEEEEcCCCeEEEEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh------------
Q 047520            1 MVVALRYADKNGYVFERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN------------   66 (102)
Q Consensus         1 l~i~vryv~~~~~i~e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~------------   66 (102)
                      |++++||+ +++++++++|+|.+++  ++||+.|++.|.+++++|||+..++++..+|||+||.|..+            
T Consensus       117 l~i~v~~i-~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~~~i~C~~H~l  195 (534)
T 2bw3_A          117 LGVTLHYH-ENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLL  195 (534)
T ss_dssp             EEEEEEEE-ETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTSEEEECHHHHH
T ss_pred             eEEEEEEe-eCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcCcccccHHHHH
Confidence            57999999 4789999999999998  59999999999999999999866678888899999988754            


Q ss_pred             --HHHHHHhhchhHHHHHHHHHHHHHHhhccchhh
Q 047520           67 --AIVAVAKKHDQINSFFNVIANVINVVGASCKRR   99 (102)
Q Consensus        67 --~v~~~~~~~~~~~~~~~~~~~~~~~f~~S~kr~   99 (102)
                        ++++.++..+.+..+++.++++++||++|+.|.
T Consensus       196 nLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~~~  230 (534)
T 2bw3_A          196 SNVLENSFEETPELNMPILACKNIVKYFKKANLQH  230 (534)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHhhH
Confidence              445556667788999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d2bw3a2	447	c.55.3.12 (A:163-609) Transposase Hermes, catalyti	2e-08

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score = 47.7 bits (112), Expect = 2e-08
 Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 17/118 (14%)

Query: 1   MVVALRYADKNGYVFERFIGFKHVTC--TTAISLKEALDQLFSKYGLSISRLRKQGYDGA 58
           + V L Y + N  + +  +G K +    +TA ++ + L  +FS++ +      K   D  
Sbjct: 30  LGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRG 88

Query: 59  SNIQGEFNAIVAV--------------AKKHDQINSFFNVIANVINVVGASCKRRDIL 102
           +N+       + +               ++  ++N       N++     +  +  + 
Sbjct: 89  ANVVKSLANNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANLQHRLR 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d2bw3a2	447	Transposase Hermes, catalytic domain {House fly (M	99.81

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=99.81  E-value=7.7e-20  Score=128.36  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=91.2

Q ss_pred             CEEEEEEEcCCCeEEEEeeeeEEcC--CCChHHHHHHHHHHHHhcCCCccceeeeeecCCcccccchh------------
Q 047520            1 MVVALRYADKNGYVFERFIGFKHVT--CTTAISLKEALDQLFSKYGLSISRLRKQGYDGASNIQGEFN------------   66 (102)
Q Consensus         1 l~i~vryv~~~~~i~e~fl~~~~~~--~~ta~~i~~~i~~~l~~~~L~~~~~~g~~~Dgas~m~g~~~------------   66 (102)
                      |+|++||++ ++.++|++|+|.+++  ++||++|++.|.+++++|||+.++++|++||||+||.|...            
T Consensus        30 l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~~~~D~a~n~~~~~~~~~~i~C~aH~L  108 (447)
T d2bw3a2          30 LGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLL  108 (447)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTSEEEECHHHHH
T ss_pred             EEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEEEEcCCcHhhHHHhhccccccchhhhh
Confidence            589999998 578999999999985  58999999999999999999999999999999999998866            


Q ss_pred             --HHHHHHhhchhHHHHHHHHHHHHHHhhccchhhhc
Q 047520           67 --AIVAVAKKHDQINSFFNVIANVINVVGASCKRRDI  101 (102)
Q Consensus        67 --~v~~~~~~~~~~~~~~~~~~~~~~~f~~S~kr~~~  101 (102)
                        ++.+.++..+.+.++++.++++++||+.|++|.+.
T Consensus       109 nl~v~d~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~  145 (447)
T d2bw3a2         109 SNVLENSFEETPELNMPILACKNIVKYFKKANLQHRL  145 (447)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence              56677788899999999999999999999988754