Citrus Sinensis ID: 047525

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MERKDDGGLHKSIKRNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVVEDRNN
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccccccccHHHHHHHHHHccccEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccEEEcccHHHHHHHccccccccccccccccEEEEcccccccEEEEEEEEcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHcccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccEHHHHHHHHHHHccHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccHHHHHHEEEccccccccccEEEccEEEEEcccccEEEEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcEEEEEcccccccccccccHHHHHEEEEcccHHHccccccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
merkddgglhksikrngegeanfrncnhekELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNIthmqshpwkekmnsyskdvqnsknessgqnfvgkgdefGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYltgkeslkQDYETRNWFLPTLFGQIVANvsgvstidrsdieisiYVPLYDGLAKHWYLAIMNIKDKtadiwdslpnseiepnhrQEIVKQNLHALDLVLFRDiafnfpsdwyfadfdilypnnvpiqpngndcgLYVMKFmetpcellfptykslpnvdWSILAVVEDRNN
Flexible Loop (DISEMBL)
merkddgglhksikrngegeanfrncNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSknessgqnfvgkgdeFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSgvstidrsdIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLfptykslpnvdWSILAVVEDRNN
Low Complexity Region (SEG)
MERKDDGGLHKSIKRNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVVEDRNN
Disordered region (IsUnstruct)
**************************************MDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITH*******************************KGDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPN**I***HRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVV*****
Disordered Region (DISOPRED)
*****************************************MTFNLAAVR*************YALVQKMYSVVEAL*******************************************VKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVVED***
Disordered Region (DISEMBL)
*********HKSIKRNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQS**********************GQNFVGKGDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVVEDRNN
Disordered Region (DISPRO)
**********K********EANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKE************************GDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVVEDR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERKDDGGLHKSIKRNGEGEANFRNCNHEKELTKLNEKMDGMTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNITHMQSHPWKEKMNSYSKDVQNSKNESSGQNFVGKGDEFGVKIAEIKDKIEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSILAVVEDRNN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q09353	697	Sentrin-specific protease	yes	no	0.438	0.213	0.24	0.0001

>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 26/175 (14%)

Query: 161 KIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIY------ 214
           +II+ Y + +  + +    Y     F    +  IV+   G +++ R   ++ I+      
Sbjct: 520 EIINFYLQLICDRSNGDSKYPKIYAFNTFFYSNIVSK--GYASVKRWTRKVDIFAFDIVL 577

Query: 215 VPLYDGLAKHWYLAIMNIKDKTADIWDSL--PNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
           VP++ G+  HW +A++++ +K  + +DSL   N+ + P  R  +  ++L        +  
Sbjct: 578 VPVHLGM--HWCMAVIDMGEKKIEFYDSLYDGNTAVLPALRGYLEAESLDK------KKT 629

Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFP--TYKSLP 325
           A NF S W           ++P Q NG+DCG++  +F E       P  T K++P
Sbjct: 630 AMNF-SGWTIQQM-----TDIPRQQNGSDCGVFSCQFGEWASRRTTPRFTQKNMP 678

Protease that deconjugates smo-1 from targeted proteins and may catalyze the processing of smo-1 to its mature form.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224132816	191	predicted protein [Populus trichocarpa]	0.314	0.560	0.385	6e-14
224115366	191	predicted protein [Populus trichocarpa]	0.314	0.560	0.385	1e-13
357483793	501	hypothetical protein MTR_5g022270 [Medic	0.4	0.271	0.277	2e-07
357471053	206	hypothetical protein MTR_4g040020 [Medic	0.367	0.606	0.268	2e-06
324505501	820	Sentrin-specific protease, partial [Asca	0.517	0.214	0.234	8e-05
38346808	393	OSJNBa0088A01.15 [Oryza sativa Japonica	0.379	0.328	0.296	0.0002
195393912	899	GJ18697 [Drosophila virilis] gi|19415010	0.388	0.146	0.280	0.0003

>gi|224132816|ref|XP_002327887.1| predicted protein [Populus trichocarpa] gi|222837296|gb|EEE75675.1| predicted protein [Populus trichocarpa]

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)

Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
           +YVP++D   +H+YL ++++K +  +IWDSL  S      ++  +   L  LD++   DI
Sbjct: 16  MYVPVFDKERRHFYLFVLHMKKQVVEIWDSLAKSSGSSVDKR--LPNMLAILDILFEDDI 73

Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTY 321
             N+P  W FA F +    NVP Q NG DCG+YV+KFM  P E   P +
Sbjct: 74  QQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEATQPDF 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115366|ref|XP_002332178.1| predicted protein [Populus trichocarpa] gi|222832426|gb|EEE70903.1| predicted protein [Populus trichocarpa]

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
           +YVP++D   +H YL ++++K +  +IWDSL  S      ++  +   L  LD++   DI
Sbjct: 16  MYVPVFDKERRHLYLFVLHMKKQVVEIWDSLAKSSGSSVDKR--LPNMLAILDILFEDDI 73

Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTY 321
             N+P  W FA F +    NVP Q NG DCG+YV+KFM  P E   P +
Sbjct: 74  QQNYPDGWSFASFSVDRSPNVPQQTNGYDCGVYVIKFMLAPEEATQPDF 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483793|ref|XP_003612183.1| hypothetical protein MTR_5g022270 [Medicago truncatula] gi|355513518|gb|AES95141.1| hypothetical protein MTR_5g022270 [Medicago truncatula]

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 12/148 (8%)

Query: 174 ESLKQDYETRNWFLPTLFGQI----------VANVSGVSTIDRSDIEISIYVPLYDGLAK 223
           +SL +    R W+LPT F QI          V  +     I +      I+VP+ D    
Sbjct: 214 DSLSKTNPRRVWYLPTSFAQIALGCRHTPQEVRKIFQKDFIPKVQSPSKIFVPINDQ-GV 272

Query: 224 HWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFA 283
           HWYL +++  ++   + DSLP  E     ++E++K  +   +++    +  N  S    +
Sbjct: 273 HWYLMVVDFSERKLVVLDSLPCLERNYIRQREVLKLGIFIEEILSIDSVVDNVDSTNSLS 332

Query: 284 DFDILYPNNVPIQPNG-NDCGLYVMKFM 310
           +F ++ P  +P Q  G NDCG++V K+M
Sbjct: 333 NFCLISPRALPTQRTGSNDCGVWVAKWM 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471053|ref|XP_003605811.1| hypothetical protein MTR_4g040020 [Medicago truncatula] gi|355506866|gb|AES88008.1| hypothetical protein MTR_4g040020 [Medicago truncatula]

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 13/138 (9%)

Query: 185 WFLPTLFGQIVANVSGVSTIDRSDIE-----------ISIYVPLYDGLAKHWYLAIMNIK 233
           W+LPT F Q V          R + +             I++P+ D    HWYL ++++ 
Sbjct: 11  WYLPTSFAQYVLGCRHTPQEVRKNFQKDFMPKEDHSVTKIFIPVNDQ-GVHWYLMVVDVM 69

Query: 234 DKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNV 293
           ++   + DSLP  E     R+E++K  +   +++    +     S    ++F I+ P ++
Sbjct: 70  ERKMVLLDSLPCPERNYLRRREVLKLGIFIEEMLSNDYVVHGVDSSISISNFCIIQPRSL 129

Query: 294 PIQPNG-NDCGLYVMKFM 310
           P Q  G NDCG++V K+M
Sbjct: 130 PTQRIGSNDCGVWVAKWM 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324505501|gb|ADY42363.1| Sentrin-specific protease, partial [Ascaris suum]

 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 29/205 (14%)

Query: 116 GDEFGVKIAEIKDK---IEDTCDENLSLKNLFAYRKLKENQIFHNVVKKIISCYAEYLTG 172
            DE  V I  I D+   +++     L+ K+L   R L  + +   V+   ++   E    
Sbjct: 611 SDEADVLIERIWDRKLPLDERISAELTRKDLMTLRGL--DWLNDEVINFYMNLICERARN 668

Query: 173 KESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIY------VPLYDGLAKHWY 226
             SL + Y    +F P+L G+      G  ++ R   ++ I+      +P++  L  HW 
Sbjct: 669 DPSLPKVYAFTTFFYPSLLGK------GYQSVRRWTRKVDIFEFDILLLPIH--LGAHWC 720

Query: 227 LAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFD 286
           LA+++  +K  D +DS+              +Q L AL   L  ++     + +    + 
Sbjct: 721 LAVIDFPNKRIDYYDSMGGEN----------RQCLSALANYLGEEMVDKKQTRFDLTGWK 770

Query: 287 ILYPNNVPIQPNGNDCGLYVMKFME 311
           ++  +++P Q NG+DCG++  KF E
Sbjct: 771 LVTRDDIPQQMNGSDCGMFTCKFAE 795

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|38346808|emb|CAD41375.2| OSJNBa0088A01.15 [Oryza sativa Japonica Group]

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 16/145 (11%)

Query: 189 TLFGQIVANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSE- 247
           T FG +  + SG S     +I   ++ P+     +HW+L ++++KD++    DSL   E 
Sbjct: 227 TNFGMVQKSFSGASLARPIEICDMLFFPILH--LRHWFLFVVDLKDESFVFIDSLFEEEE 284

Query: 248 -IEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYV 306
             + N R  ++ +       +++R      P +  FA F I+YP   P Q N  DCG++ 
Sbjct: 285 DYQYNARCRLISKFS-----IVWRKFVPEHPIN--FASFKIIYPPR-PRQTNRLDCGIFT 336

Query: 307 MKFMET--PCELLFPTY--KSLPNV 327
           +KFME   P  LL   +  K +PN+
Sbjct: 337 LKFMEIWRPRVLLTNQFSQKDIPNI 361

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195393912|ref|XP_002055596.1| GJ18697 [Drosophila virilis] gi|194150106|gb|EDW65797.1| GJ18697 [Drosophila virilis]

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 32/164 (19%)

Query: 161 KIISCYAEYLTGKESLKQD-----YETRNWFLPTLFGQIVANVSGVSTIDRSDIEISIY- 214
           ++I+ Y   LT +   K+      Y    +F+P L         G S + R   ++ I+ 
Sbjct: 722 EVINFYMNLLTDRSQRKEGKLPSVYAMNTFFVPRLLQ------GGYSNVKRWTRKVDIFS 775

Query: 215 -----VPLYDGLAKHWYLAIMNIKDKTADIWDSL--PNSEIEPNHRQEIVKQNLHALDLV 267
                VP++     HW +AI+++K+KT   +DS+  PNSE+            L+AL+  
Sbjct: 776 KDIIPVPVHVSNV-HWCMAIIHMKNKTIRYYDSMGKPNSEV------------LNALENY 822

Query: 268 LFRDIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
           L  +        +  +DF I    NVP Q NG+DCG++   F E
Sbjct: 823 LHEESLDKRKKPFDTSDFTIENVQNVPHQTNGSDCGVFSCMFAE 866

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!
3rd Layer	3.4.22.68	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0064012001 hypothetical protein (191 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	3e-14
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	7e-06

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQN--LHALDLVLFR 270
           IY+P+     KHW L I+N+  KT  I DSL +      H + + K+   +  +   L  
Sbjct: 86  IYIPINWD-GKHWVLLIINLPKKTITILDSLISL-----HTEAVKKRIRPIDNMLPYLMS 139

Query: 271 DIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
           +       D     F+I     VP QPN  DCG YV+KF+E
Sbjct: 140 EALKKEQDDPDLTPFEIKRLTKVPQQPNSGDCGPYVLKFIE 180

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 34/108 (31%)

Query: 213 IYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
           I++P+   ++ HW+LAI++   K    +DSL N+                        D 
Sbjct: 456 IFIPIN--ISYHWFLAIIDNPKKNILYFDSLANTH-----------------------DP 490

Query: 273 AFNFPSDWYFA---------DFDILYPNNVPIQPNGNDCGLYVMKFME 311
              F   +                +    VP Q NG+DCG++V  F+ 
Sbjct: 491 VLEFLRSYLLDEYKIQHDKDPQIKMKHCKVPQQRNGSDCGVFVCMFIR 538

Length = 578

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	100.0
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.94
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.9
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	99.09
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	95.61
PRK11836	403	deubiquitinase; Provisional	94.82
PRK14848	317	deubiquitinase SseL; Provisional	94.27
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	93.35

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-43  Score=352.03  Aligned_cols=177  Identities=23%  Similarity=0.380  Sum_probs=156.5

Q ss_pred             hhcccCCCCCccccCchhHHHHHHHHHHcC----CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEE
Q 047525          144 FAYRKLKENQIFHNVVKKIISCYAEYLTGK----ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVP  216 (340)
Q Consensus       144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~----~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIP  216 (340)
                      -++++|.|+.|||   |+||||||+||.++    +.+|++|+||||||++|...||++|+   ++++||++|+   ||||
T Consensus       323 ~dl~tl~~~~WLN---DevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~~gy~~VkRWTk~v~if~~d~---i~vP  396 (511)
T KOG0778|consen  323 KDLQTLRPGNWLN---DEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVGRGYAGVKRWTKKVDIFDKDI---IFVP  396 (511)
T ss_pred             HHHhhccCccchh---HHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhhcchHHHHhHhhccCccccce---eEee
Confidence            3579999999999   99999999999976    23788999999999999999999998   7799999996   9999


Q ss_pred             eecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCC
Q 047525          217 LYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQ  296 (340)
Q Consensus       217 IN~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ  296 (340)
                      ||.  +.||+|+|||.++++|.|||||++.......   +|.+||..+. +.+      ....++++.|++....++|||
T Consensus       397 IH~--~vHW~l~vid~r~k~i~y~DS~~~~~nr~~~---aL~~Yl~~E~-~~k------~~~~~d~s~w~~~~~~~iP~Q  464 (511)
T KOG0778|consen  397 IHL--GVHWCLAVIDLREKTIEYYDSLGGGPNRICD---ALAKYLQDES-RDK------SKKDFDVSGWTIEFVQNIPQQ  464 (511)
T ss_pred             eec--CceEEEEEEEcccceEEEeeccCCCCcchHH---HHHHHHHHHH-hhh------hcCCCCccchhhhhhhccccc
Confidence            999  6999999999999999999999977666656   8889998876 222      356788899999888899999


Q ss_pred             CCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhhh
Q 047525          297 PNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVEDR  338 (340)
Q Consensus       297 ~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~~  338 (340)
                      .||+|||||+|+|+++.....+.+|+  |||.||.+|+.++.+.
T Consensus       465 ~Ng~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR~~m~~eI~~~  508 (511)
T KOG0778|consen  465 RNGSDCGMFVCKYADYISRDVPLTFTQQDMPYFRKKMAKEILHL  508 (511)
T ss_pred             cCCCccceEEeeechhhccCCCcccChhhhHHHHHHHHHHHHhh
Confidence            99999999999999976566677887  9999999999988653

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=1.4e-38  Score=316.72  Aligned_cols=176  Identities=20%  Similarity=0.285  Sum_probs=144.8

Q ss_pred             hhcccCCCCCccccCchhHHHHHHHHHHcC----C-CCCCcceeeccccchhccc----cccCcc-----cc--ccCCcC
Q 047525          144 FAYRKLKENQIFHNVVKKIISCYAEYLTGK----E-SLKQDYETRNWFLPTLFGQ----IVANVS-----GV--STIDRS  207 (340)
Q Consensus       144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~----~-~~~kv~~fnsfF~~~L~~~----g~~~vk-----k~--~dlf~k  207 (340)
                      .++.+|.||+|||   |+||||||+||.++    + ..+++|+||||||++|...    +|.+|+     ++  +++|++
T Consensus       293 ~DL~~L~Pg~WLN---DeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~~~ygY~~VrRWTk~kKigv~Lfs~  369 (490)
T PLN03189        293 EILRCLKPGAWLN---DEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKLGYHLIDC  369 (490)
T ss_pred             HHhhccCCCCccC---HHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcCCcCChHHHHHHhhhcccccccccC
Confidence            3578999999999   99999999999864    2 2468999999999999875    688886     22  478999


Q ss_pred             CCCceEEEEeecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccee
Q 047525          208 DIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDI  287 (340)
Q Consensus       208 d~~~~IfIPIN~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i  287 (340)
                      |+   ||||||.  +.||+|+|||+++++|.|||||++.+.....   .|++|+..+.   .+    ..+..++.+.|..
T Consensus       370 D~---IFIPIh~--n~HWsLaVId~k~k~I~yyDSLgg~~~~vL~---~L~rYL~~E~---kd----K~g~d~D~s~W~~  434 (490)
T PLN03189        370 DK---IFVPIHQ--EIHWTLAVINKKDQKFQYLDSLKGRDPKILD---ALAKYYVDEV---KD----KSEKDIDVSSWEQ  434 (490)
T ss_pred             ce---EEeeeec--CCeeEEEEEEcCCCeEEEEeCCCCCCHHHHH---HHHHHHHHHH---hh----hcCCCcchhccee
Confidence            95   9999999  5999999999999999999999998766554   7888886554   11    1355677888987


Q ss_pred             eCCCCcCCCCCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525          288 LYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       288 ~~p~~vPqQ~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      ..+.++|||.||+|||||||+||+......+..|+  |||.+|.+|+..|-.
T Consensus       435 ~~~~~vPQQ~NG~DCGVFVL~yAE~~SrG~~LtFSQeDMp~fRrRma~EIl~  486 (490)
T PLN03189        435 EFVEDLPEQKNGYDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEILR  486 (490)
T ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCcChhhhHHHHHHHHHHHHH
Confidence            76677999999999999999999954333445687  999999999987753

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-37  Score=305.67  Aligned_cols=173  Identities=21%  Similarity=0.286  Sum_probs=142.7

Q ss_pred             hhhcccCCCCCccccCchhHHHHHHHHHHcCC----CCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEE
Q 047525          143 LFAYRKLKENQIFHNVVKKIISCYAEYLTGKE----SLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYV  215 (340)
Q Consensus       143 ~~~~~sL~pg~wLNd~vD~IInfYl~~L~~~~----~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfI  215 (340)
                      ..|+++|.+|+|||   |+||||||+||..+.    ..++||+||||||++|.+.||++|+   ++++||++++   |||
T Consensus       385 ~~D~~~L~~~~wLN---DtIIdFy~k~ls~~sk~~s~~~~vh~FnTFFYT~LsrrGy~gVrrW~kk~dif~~k~---I~i  458 (578)
T COG5160         385 NQDFKRLRNGDWLN---DTIIDFYMKLLSKISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTDIFSKKY---IFI  458 (578)
T ss_pred             hHhhhhhccccchh---hHHHHHHHHHHHHhccCcccccceEEeehhhHHHHHHHHhHHHHHHHhccCccccce---EEE
Confidence            45689999999999   999999999998652    2678999999999999999999998   7789999996   999


Q ss_pred             EeecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCC
Q 047525          216 PLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPI  295 (340)
Q Consensus       216 PIN~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPq  295 (340)
                      |||.  ..||+|+|||.+++.|.|||||++.+..+..   .|+.|+..+.    +..       .+.+.|....-.++||
T Consensus       459 PIni--~~HW~l~II~~~~~~i~~~DSLan~~~~v~~---~L~~Y~ldE~----k~~-------~~k~~~~~~~~~~vPq  522 (578)
T COG5160         459 PINI--SYHWFLAIIDNPKKNILYFDSLANTHDPVLE---FLRSYLLDEY----KIQ-------HDKDPQIKMKHCKVPQ  522 (578)
T ss_pred             Eecc--cceEEEEEeecCcceeEEecccccCcHHHHH---HHHHHHHHHH----hcc-------cCCchhhhhhcCCCCC
Confidence            9999  5999999999999999999999999877666   7777765442    211       1222232233456999


Q ss_pred             CCCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525          296 QPNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       296 Q~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      |.||+|||||||+|++...+-.+.+|+  |+|++|+.|++.+.+
T Consensus       523 Q~Ng~DCGV~vc~~~~~~~~~~p~~f~~nd~~r~Rk~m~h~i~~  566 (578)
T COG5160         523 QRNGSDCGVFVCMFIRYFLENPPEQFSKNDRPRARKNMAHTIKD  566 (578)
T ss_pred             CCCCCccceEEEEeeeecccCChhhcCccchHHHHHHHHHHHHH
Confidence            999999999999999964444456777  999999999998764

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.94  E-value=7.3e-28  Score=217.54  Aligned_cols=169  Identities=27%  Similarity=0.369  Sum_probs=113.4

Q ss_pred             CccccCchhHHHHHHHHHHcC-----CCCCCcceeeccccchhc--------------------cccccCcc---ccc--
Q 047525          153 QIFHNVVKKIISCYAEYLTGK-----ESLKQDYETRNWFLPTLF--------------------GQIVANVS---GVS--  202 (340)
Q Consensus       153 ~wLNd~vD~IInfYl~~L~~~-----~~~~kv~~fnsfF~~~L~--------------------~~g~~~vk---k~~--  202 (340)
                      +|||   |+|||||+++|..+     ...+++++++|+|++.+.                    ...+.++.   +..  
T Consensus         1 ~wLn---d~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (216)
T PF02902_consen    1 EWLN---DSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNK   77 (216)
T ss_dssp             --EE---HHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCT
T ss_pred             CcCC---HHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhcccc
Confidence            5899   99999999999722     225689999999999998                    22222222   333  


Q ss_pred             -cCCcCCCCceEEEEeecCCCCceEEEEEEeCCCceEEecCCCCCCC--CcccHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 047525          203 -TIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEI--EPNHRQEIVKQNLHALDLVLFRDIAFNFPSD  279 (340)
Q Consensus       203 -dlf~kd~~~~IfIPIN~~~~~HW~L~VId~~~~~I~~~DSL~~~~~--~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~  279 (340)
                       +++++++   ||+|||.+ +.||+|+||+++.++|.+||||++...  ........+..+|.... . ..     ....
T Consensus        78 ~~l~~~~~---i~iPin~~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~-~-~~-----~~~~  146 (216)
T PF02902_consen   78 KNLFDKDY---IFIPININ-NNHWVLLVIDLPKKRIYVYDSLGSSNNDKRYKRVIENIIPFLKREY-K-KK-----EGRD  146 (216)
T ss_dssp             STGGGSSE---EEEEEEET-TTEEEEEEEETTTTEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHH-H-HH-----HSSC
T ss_pred             ccccccCE---EEEEEech-hhccceeEEcccccEEEEEeccccccccccchhhhhhhhhhhhhcc-c-cc-----cccc
Confidence             8899995   99999996 799999999999999999999999876  01111113333332211 1 11     1223


Q ss_pred             CccccceeeCCCCcCCCCCCCchHHHHHHHccccccccCCC----CC--CCCcccHHHHHHH
Q 047525          280 WYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPT----YK--SLPNVDWSILAVV  335 (340)
Q Consensus       280 ~~~~~~~i~~p~~vPqQ~N~~DCGVFVl~fae~~~~~l~~~----F~--dip~iR~~i~~~~  335 (340)
                      ++.+.|....+..+|||.|++|||||||+||+.........    +.  ++..+|.+++..+
T Consensus       147 ~~~~~~~~~~~~~~pqQ~n~~dCGv~vl~~~~~~~~~~~~~~~~~l~~~~i~~~r~~~a~~~  208 (216)
T PF02902_consen  147 PDKSPFKIVRPPNVPQQPNGYDCGVYVLKFMECLLEGPSFDFSQELTEEDIKNFRKKLAVDL  208 (216)
T ss_dssp             T-TTTCEEEEECTS-SSSSSSCHHHHHHHHHHHHHCTHHSTGCCSBTGHHHHHHHHHHHH--
T ss_pred             cccceeeecccccccCCCCCCCcHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHhhc
Confidence            35567877777779999999999999999999322111111    44  8999999998654

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.90  E-value=4.5e-24  Score=192.91  Aligned_cols=165  Identities=20%  Similarity=0.247  Sum_probs=106.9

Q ss_pred             hcccCCCCCccccCchhHHHHHHHHHHcCC--CCCCcceee---ccccchhcc-ccccCccccccCCcCCCCceEEEEee
Q 047525          145 AYRKLKENQIFHNVVKKIISCYAEYLTGKE--SLKQDYETR---NWFLPTLFG-QIVANVSGVSTIDRSDIEISIYVPLY  218 (340)
Q Consensus       145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~~--~~~kv~~fn---sfF~~~L~~-~g~~~vkk~~dlf~kd~~~~IfIPIN  218 (340)
                      |.+.|+|+.|||   |.+|+||.+||..+.  +.+..++++   +||...... +....+....++.+|++   ||+|||
T Consensus        23 DVdlL~~p~wln---D~~I~F~~e~l~~~~~~s~~~~~ll~P~~t~~l~~~~~~~e~~~~~~pl~l~~k~~---iflpiN   96 (223)
T KOG3246|consen   23 DVDLLQPPEWLN---DRLIDFYYEYLEHRRSRSEPDLHLLRPSLTFFLRHAPNPEEIAMVLDPLDLNDKDF---IFLPIN   96 (223)
T ss_pred             hhhhcCCCchhh---hhHHHHHHHHHHHhhcccCcchhccCHHHHHHHHhCCCcHHHHHhcChhhcCCCce---EEEEec
Confidence            357799999999   889999999999652  233332222   122221111 11222224558999997   999999


Q ss_pred             cC-------CCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCC
Q 047525          219 DG-------LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPN  291 (340)
Q Consensus       219 ~~-------~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~  291 (340)
                      ++       ||+||+|+|+..++.+.+||||+.+.+.....  .++++.=..   + .++        +.     ...+.
T Consensus        97 Dn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~--~l~~kl~~l---l-~~~--------~~-----~~~~~  157 (223)
T KOG3246|consen   97 DNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKDAK--SLMKKLRAL---L-KKK--------FA-----KRVEC  157 (223)
T ss_pred             CCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHHHH--HHHHHHHHH---H-hhh--------hh-----hcccc
Confidence            97       56899999999999999999999998876554  233322111   1 111        11     01155


Q ss_pred             CcCCCCCCCchHHHHHHHccc-----cccccCCCCC-CCCcccHHHHHH
Q 047525          292 NVPIQPNGNDCGLYVMKFMET-----PCELLFPTYK-SLPNVDWSILAV  334 (340)
Q Consensus       292 ~vPqQ~N~~DCGVFVl~fae~-----~~~~l~~~F~-dip~iR~~i~~~  334 (340)
                      .+|||.||||||+|||.+++.     .++.....+. +-|.++..+..+
T Consensus       158 ~~~qQqNgyDCG~hV~~~t~~l~~~~~~~~~~~~~~~~~~~~i~~lr~~  206 (223)
T KOG3246|consen  158 KCLQQQNGYDCGLHVCCNTRVLAERLLRCPYATSSQLLVVDLIKALREE  206 (223)
T ss_pred             cChhhhcCCchhHHHHHHHHHHHHHHhccccccccchhhHHHHHHHHHH
Confidence            699999999999999999983     2233334444 444444444433

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=9.3e-11  Score=122.63  Aligned_cols=156  Identities=21%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             hhhhhcccCCCCCccccCchhHHHHHHHHHHcC--C---CCCCcceeeccccchhccc---cccC---------cc---c
Q 047525          141 KNLFAYRKLKENQIFHNVVKKIISCYAEYLTGK--E---SLKQDYETRNWFLPTLFGQ---IVAN---------VS---G  200 (340)
Q Consensus       141 ~~~~~~~sL~pg~wLNd~vD~IInfYl~~L~~~--~---~~~kv~~fnsfF~~~L~~~---g~~~---------vk---k  200 (340)
                      .+.-|+.+|++|.+|+   |.|++||++|+...  +   ..+..|+|++|||..+.+.   +...         ++   +
T Consensus       355 v~~~Dl~cl~~~e~L~---d~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~  431 (595)
T KOG0779|consen  355 VNNNDLVCLEEGEFLN---DTIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTR  431 (595)
T ss_pred             eeccchhhccccchhh---hhhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeeee
Confidence            3455678999999999   77799999999854  1   1456899999999988652   1111         11   5


Q ss_pred             cccCCcCCCCceEEEEeecCCCCceEEEEEEeCCC------ceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhc-c
Q 047525          201 VSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDK------TADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI-A  273 (340)
Q Consensus       201 ~~dlf~kd~~~~IfIPIN~~~~~HW~L~VId~~~~------~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~-~  273 (340)
                      ..|+|.+++   |++|+|.  ..||.|++++.+..      .....+++.........  ..+...+...    +... +
T Consensus       432 ~~d~~~k~y---i~~P~~E--~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~  500 (595)
T KOG0779|consen  432 HFDLFNKDY---VFVPTHE--RFHWKLAIICNPDLETETPRPRLELLILKLSADFPIV--ENILDFMKVA----SIYNNE  500 (595)
T ss_pred             cccccccee---EEecCch--HhhhhccccccCccccCccccchhhhhhccccccchh--hhhhhhhhhc----ccccCc
Confidence            679999996   9999999  49999999998753      33344444444332222  1222222111    1110 0


Q ss_pred             cCCCCCCc--ccccee------eCCCCcCCCCCCCchHHHHHHHcc
Q 047525          274 FNFPSDWY--FADFDI------LYPNNVPIQPNGNDCGLYVMKFME  311 (340)
Q Consensus       274 ~~~~~~~~--~~~~~i------~~p~~vPqQ~N~~DCGVFVl~fae  311 (340)
                      .....+..  ..-++.      .... .|||.|..|||+|++.|++
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~~s~~v~-~p~q~n~~dcG~~~~~~v~  545 (595)
T KOG0779|consen  501 LIVTEDLELEEELPRRLPRGKSETVR-EPQQNNDVDCGSFVLEFVE  545 (595)
T ss_pred             ccccccccccccccccCccccccccc-ccCccCcccchhhHHHHHH
Confidence            00000000  000110      0112 3899999999999999998

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.61  E-value=0.025  Score=56.21  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             eEEEEeecCCCCceEEEEEEeCCCceEEecCCCCC
Q 047525          212 SIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNS  246 (340)
Q Consensus       212 ~IfIPIN~~~~~HW~L~VId~~~~~I~~~DSL~~~  246 (340)
                      ++.+|.+.  ..||.++|+|-+++-+.+|||-|..
T Consensus       233 yvmFgfcY--~~Hwkc~IfDk~~~~v~FydSgG~~  265 (423)
T PF03290_consen  233 YVMFGFCY--MSHWKCCIFDKEKKIVYFYDSGGNI  265 (423)
T ss_pred             EEEeeeee--hhcceEEEEeccccEEEEEcCCCCC
Confidence            59999999  5999999999999999999998864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PRK11836 deubiquitinase; Provisional

Probab=94.82  E-value=0.047  Score=52.64  Aligned_cols=42  Identities=17%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             cCCcCCCCceEEEEeecCCCCceEEEEEE--------eCCCceEEecCCCCCCCC
Q 047525          203 TIDRSDIEISIYVPLYDGLAKHWYLAIMN--------IKDKTADIWDSLPNSEIE  249 (340)
Q Consensus       203 dlf~kd~~~~IfIPIN~~~~~HW~L~VId--------~~~~~I~~~DSL~~~~~~  249 (340)
                      .+|-++.   =+||||.  |.||.|+++.        .++.+.++|.|+..-+..
T Consensus       215 ~~~~k~~---elFpINt--g~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d  264 (403)
T PRK11836        215 PSWPKEV---QLFPINT--GGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHD  264 (403)
T ss_pred             CCCcccc---eEEEecC--CCcEEEEEeHHhhhcccccceeEEEEEecHhhhccc
Confidence            6677775   8999997  7999999873        234455678888765443

>PRK14848 deubiquitinase SseL; Provisional

Probab=94.27  E-value=0.067  Score=50.64  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=42.7

Q ss_pred             EEEEeecCCCCceEEEEEEe--CCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCC
Q 047525          213 IYVPLYDGLAKHWYLAIMNI--KDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYP  290 (340)
Q Consensus       213 IfIPIN~~~~~HW~L~VId~--~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p  290 (340)
                      =+||||.  |.||.|++..-  .+.+.++|.|++.-+..      .+++.+...    +  .+   +  .. .+-.+...
T Consensus       191 evF~INt--g~HWil~~~~Ki~~kiKC~iFNs~~~l~eN------s~~~ii~~a----k--~a---g--~~-~e~di~fI  250 (317)
T PRK14848        191 EVFLINT--GDHWLLCLFYKLAEKIKCLIFNTYYDLNEN------TKQEIIEAA----K--IA---G--IS-ENEDVNFI  250 (317)
T ss_pred             eEEEecC--CCcEEEEEhHHhhhhceEEEeecHhhhhhh------HHHHHHHHH----H--hh---C--cc-cCCceEEe
Confidence            3599998  79999998732  23344678888765422      222222211    1  10   1  00 01111222


Q ss_pred             CCcCCCCCCCchHHHHHHHcc
Q 047525          291 NNVPIQPNGNDCGLYVMKFME  311 (340)
Q Consensus       291 ~~vPqQ~N~~DCGVFVl~fae  311 (340)
                      ..--||.=..-||.|||.+++
T Consensus       251 e~nLQqnVpngCGlFv~~aIq  271 (317)
T PRK14848        251 ETNLQNNVPNGCGLFCYHTIQ  271 (317)
T ss_pred             ehhhhhhCCCcchHHHHHHHH
Confidence            212344447889999999987

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.35  E-value=0.059  Score=48.25  Aligned_cols=85  Identities=16%  Similarity=0.289  Sum_probs=39.7

Q ss_pred             eecC----CCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCC
Q 047525          217 LYDG----LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNN  292 (340)
Q Consensus       217 IN~~----~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~  292 (340)
                      ||..    ||.||.-...|++..+++.+|.+|-+..+      +.+-|-..-+-+.+++. -....+-   -.+++....
T Consensus        24 VNT~~retGGvHWlA~Aw~P~s~t~YmFDPfGfsd~~------L~qiY~FeYe~llrRSA-L~~~~dR---Cv~Lvkstq   93 (183)
T PF00770_consen   24 VNTGGRETGGVHWLAFAWDPRSRTFYMFDPFGFSDQK------LKQIYQFEYEGLLRRSA-LSSTPDR---CVTLVKSTQ   93 (183)
T ss_dssp             EESS-TTT--S-EEEEEEETTTTEEEEE-TT---HHH------HHHHH----HHHHHHHH-HHH-TTS---EEEEEEE-E
T ss_pred             EecCCcccCceeEEEEEecCCcceEEEeCCCCCCHHH------HHHHHhhhHHHHHHHHh-hcCCCCc---eEEEEeccc
Confidence            5654    68999999999999999999999987432      22222111111112211 0000111   123344444


Q ss_pred             cCCCCCCCchHHHHHHHcc
Q 047525          293 VPIQPNGNDCGLYVMKFME  311 (340)
Q Consensus       293 vPqQ~N~~DCGVFVl~fae  311 (340)
                      .-|=+++--||+|.|.|..
T Consensus        94 tVQ~p~SaaCGLFC~lFL~  112 (183)
T PF00770_consen   94 TVQCPCSAACGLFCCLFLH  112 (183)
T ss_dssp             E-S-TT---HHHHHHHHHH
T ss_pred             eeeccCchhHHHHHHHHHH
Confidence            5556689999999999886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	1e-09
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	3e-09
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	5e-09
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	1e-06
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 24/187 (12%), Positives = 61/187 (32%), Gaps = 32/187 (17%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSG------VSTIDRSDIEISIYV 215
            +  Y + L  +    +       F  +    ++++            +   DI   +++
Sbjct: 9   HLRAYTDDLA-RRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDIPPIVFL 67

Query: 216 PLYDGLAKHWYLAIMNIKDKTADI---WDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDI 272
           P+    A HW L +++ ++K A     +DS+   + +  +  ++   +L           
Sbjct: 68  PINQPNA-HWSLLVVDRRNKDAVAAYHYDSMAQKDPQQRYLADMAAYHL----------- 115

Query: 273 AFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPTYKSLPNVDWSIL 332
                      D+   +   + IQ +G   G +V+  +E     +             + 
Sbjct: 116 ---------GLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYA-GGRDLT 165

Query: 333 AVVEDRN 339
            +  DR 
Sbjct: 166 DIEPDRG 172

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 55.6 bits (133), Expect = 3e-09
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 19/157 (12%)

Query: 161 KIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEISI------Y 214
           +II+ Y   L   E  K+          T F   +   +G   + R   ++ +       
Sbjct: 63  EIINFYMNML--MERSKEKGLPSVHAFNTFFFTKLKT-AGYQAVKRWTKKVDVFSVDILL 119

Query: 215 VPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAF 274
           VP++ G+  HW LA+++ + K    +DS+       N    I+ Q L      + +    
Sbjct: 120 VPIHLGV--HWCLAVVDFRKKNITYYDSMGGI---NNEACRILLQYLK--QESIDKKRKE 172

Query: 275 NFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
              + W            +P Q NG+DCG++  K+ +
Sbjct: 173 FDTNGW---QLFSKKSQEIPQQMNGSDCGMFACKYAD 206

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEI--SIYVPLYD 219
           II  + +Y+  ++S        ++F   L  +    V       ++ I+    I+ P+  
Sbjct: 53  IIEFFMKYI--EKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINL 110

Query: 220 GLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSD 279
             + HW L I+++K KT    DSL N     +              L   +         
Sbjct: 111 NQS-HWALGIIDLKKKTIGYVDSLSNGPNAMSFAI-----------LTDLQKYVMEESKH 158

Query: 280 WYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
               DFD+++ +  P QPNG DCG+YV     
Sbjct: 159 TIGEDFDLIHLDC-PQQPNGYDCGIYVCMNTL 189

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 161 KIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVA--NVSGVSTIDRSDIEIS---IYV 215
           ++I+ Y   L   E  K+          T F   +       V    +         I V
Sbjct: 51  EVINFYMNLL--VERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILV 108

Query: 216 PLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFN 275
           P++  +  HW L +++++ K     DS+       +   EI+ Q L   D    +  +  
Sbjct: 109 PIHRKV--HWSLVVIDLRKKCLKYLDSMGQK---GHRICEILLQYLQ--DESKTKRNSDL 161

Query: 276 FPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
              +W       + P+ +P Q NG+DCG++  K+ +
Sbjct: 162 NLLEW---THHSMKPHEIPQQLNGSDCGMFTCKYAD 194

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 32/170 (18%), Positives = 51/170 (30%), Gaps = 30/170 (17%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDR--SDIEIS----IYV 215
           II    EY     S   D      F+     Q +   S  + I      +++     +++
Sbjct: 31  IIGFAFEYF--ANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFL 88

Query: 216 PLYDGLA-----KHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFR 270
            + D         HW L +      +   +DS   S    +   + V + L A       
Sbjct: 89  AINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRS---NSVHAKQVAEKLEAF------ 139

Query: 271 DIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFMETPCELLFPT 320
                   D              P Q N  DCG+YV+   E  C+  F  
Sbjct: 140 ---LGRKGDKLA-----FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 41/288 (14%), Positives = 83/288 (28%), Gaps = 72/288 (25%)

Query: 42  MTFNLAAVRYELGELKRNNLDSYALVQKMYSVVEALEHNIT-----HMQSHPWKEKMNSY 96
           M F     +Y+  ++     D++        V +  +  ++     H+            
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 97  SKDVQNSKNESSGQNFVGKGDEFGVKIAEIKDKIEDTCDENLSLKNLFAY---RKLKENQ 153
                 SK E   Q FV +      K   +   I+    +   +  ++     R   +NQ
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 154 IF--HNV-----VKKIISCY-----AEYLT-------GKESLK----QDYETRNWFLPTL 190
           +F  +NV       K+         A+ +        GK  +       Y+ +       
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---- 180

Query: 191 FGQIV-ANVSGVSTIDRSDIEISIYVPLYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIE 249
             +I   N+        + +E+         L K  Y    N        W S  +    
Sbjct: 181 DFKIFWLNL-KNCNSPETVLEM---------LQKLLYQIDPN--------WTSRSDHSSN 222

Query: 250 PNHRQEIVKQNL----------HALDLVLFRDIAFNFPSDWYFADFDI 287
              R   ++  L          + L LVL  ++     +   +  F++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL-LVL-LNVQ----NAKAWNAFNL 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	100.0
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	100.0
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	100.0
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.98
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.96
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	95.63

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=100.00  E-value=1.4e-37  Score=286.13  Aligned_cols=175  Identities=20%  Similarity=0.314  Sum_probs=143.8

Q ss_pred             hcccCCCCCccccCchhHHHHHHHHHHcC---CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEEee
Q 047525          145 AYRKLKENQIFHNVVKKIISCYAEYLTGK---ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVPLY  218 (340)
Q Consensus       145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~---~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIPIN  218 (340)
                      ++.+|+||+|||   |+|||||++||.++   ...+++|+|+||||++|...+|.+++   +.+++|++++   ||||||
T Consensus        38 Dl~~L~~~~wLN---D~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~---i~iPin  111 (226)
T 1th0_A           38 DIQTLKNYHWLN---DEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEI---ILVPIH  111 (226)
T ss_dssp             HHGGGSTTCCCC---HHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSE---EEEEEE
T ss_pred             HHhhcCCCCccC---hHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCE---EEEeEE
Confidence            578999999999   99999999999854   23578999999999999988888776   6789999995   999999


Q ss_pred             cCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceee--CCCCcCCC
Q 047525          219 DGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDIL--YPNNVPIQ  296 (340)
Q Consensus       219 ~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~--~p~~vPqQ  296 (340)
                      .  +.||+|+|||.++++|.|||||++.+.....   .+++|+..+.   +.+    .+..++.+.|++.  .+.++|||
T Consensus       112 ~--~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~---~l~~~l~~e~---~~k----~~~~~~~~~w~~~~~~~~~~PqQ  179 (226)
T 1th0_A          112 R--KVHWSLVVIDLRKKCLKYLDSMGQKGHRICE---ILLQYLQDES---KTK----RNSDLNLLEWTHHSMKPHEIPQQ  179 (226)
T ss_dssp             E--TTEEEEEEEETTTTEEEEECTTCCCCHHHHH---HHHHHHHHHH---HHH----TSCCCCGGGCEEEECCTTTSCCC
T ss_pred             e--CcEEEEEEEEcCCCceEEEcCCCCCchHHHH---HHHHHHHHHH---HHh----cCCCCCcccceeccccCCCCCCC
Confidence            9  6999999999999999999999998654443   6777776543   221    2445666788864  34569999


Q ss_pred             CCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525          297 PNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       297 ~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      .||+|||||||+||+......+.+|+  |||.+|++|+..+-.
T Consensus       180 ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~  222 (226)
T 1th0_A          180 LNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH  222 (226)
T ss_dssp             CSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHh
Confidence            99999999999999954444456787  999999999988754

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=100.00  E-value=1.7e-37  Score=287.78  Aligned_cols=176  Identities=19%  Similarity=0.315  Sum_probs=143.6

Q ss_pred             hhcccCCCCCccccCchhHHHHHHHHHHcC---CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEEe
Q 047525          144 FAYRKLKENQIFHNVVKKIISCYAEYLTGK---ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVPL  217 (340)
Q Consensus       144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~---~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIPI  217 (340)
                      .++.+|+||+|||   |+|||||++||.++   +..+++|+|+||||++|...||..++   +.+++|++++   |||||
T Consensus        49 ~Dl~~L~~~~wLN---D~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~---i~iPi  122 (238)
T 2xph_A           49 KDIQTLNHLNWLN---DEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDI---LLVPI  122 (238)
T ss_dssp             HHHHTTSTTCCCC---HHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSE---EEEEE
T ss_pred             HHHhhcCCCCccC---HHHHHHHHHHHHHhhhhcCCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCE---EEEcc
Confidence            3578999999999   99999999999854   23578999999999999888877775   6789999995   99999


Q ss_pred             ecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceee--CCCCcCC
Q 047525          218 YDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDIL--YPNNVPI  295 (340)
Q Consensus       218 N~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~--~p~~vPq  295 (340)
                      |.  +.||+|+|||.++++|.|||||++.+.....   .+.+||..+.   ..+    .+..++...|++.  .+.++||
T Consensus       123 n~--~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~---~l~~~L~~e~---~~k----~~~~~~~~~w~~~~~~~~~~Pq  190 (238)
T 2xph_A          123 HL--GVHWCLAVVDFRKKNITYYDSMGGINNEACR---ILLQYLKQES---IDK----KRKEFDTNGWQLFSKKSQEIPQ  190 (238)
T ss_dssp             EE--TTEEEEEEEETTTTEEEEECTTCCCCHHHHH---HHHHHHHHHH---HHH----HCSCCCCTTCEEEECCSSSSCC
T ss_pred             cC--CCceEEEEEEcccceEEEeecccCCCHHHHH---HHHHHHHHHH---HHh----cCCCcCcccceecccCCCCCCC
Confidence            99  6999999999999999999999988755444   6677776543   111    1345666788864  3556999


Q ss_pred             CCCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525          296 QPNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       296 Q~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      |.||+|||||||+||+......+.+|+  |||.+|++|+..+-+
T Consensus       191 Q~Ng~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~  234 (238)
T 2xph_A          191 QMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILH  234 (238)
T ss_dssp             CSBGGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHh
Confidence            999999999999999954444455787  999999999987754

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=100.00  E-value=2.8e-35  Score=269.99  Aligned_cols=171  Identities=22%  Similarity=0.335  Sum_probs=133.4

Q ss_pred             hcccCCCCCccccCchhHHHHHHHHHHcCCCCCCcceeeccccchhccccccCcc-----ccccCCcCCCCceEEEEeec
Q 047525          145 AYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVS-----GVSTIDRSDIEISIYVPLYD  219 (340)
Q Consensus       145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~~~~~kv~~fnsfF~~~L~~~g~~~vk-----k~~dlf~kd~~~~IfIPIN~  219 (340)
                      ++.+|+||+|||   |+|||||++||.+.  .+++++|+||||++|...||.+++     +.+++|++++   ||||||.
T Consensus        39 Dl~~L~~~~wLN---D~vI~fy~~~l~~~--~~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~~---i~iPin~  110 (221)
T 1euv_A           39 DFKTLAPRRWLN---DTIIEFFMKYIEKS--TPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDK---IFTPINL  110 (221)
T ss_dssp             HHGGGSTTCCCB---HHHHHHHHHHHHHH--STTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSE---EEEEEEE
T ss_pred             HHhhhcCCCCCC---HHHHHHHHHHHHhc--CCCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCCE---EEEEEEc
Confidence            578999999999   99999999999865  368999999999999988888885     2569999995   9999999


Q ss_pred             CCCCceEEEEEEeCCCceEEecCCCCCCCCcc-cHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCCC
Q 047525          220 GLAKHWYLAIMNIKDKTADIWDSLPNSEIEPN-HRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPN  298 (340)
Q Consensus       220 ~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~-~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~N  298 (340)
                      + +.||+|+|||+++++|.|||||++...... .....+++|+..+.   ++    ..+     ..|++..+ ++|||.|
T Consensus       111 ~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~---~~----~~~-----~~~~~~~~-~~PqQ~N  176 (221)
T 1euv_A          111 N-QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEES---KH----TIG-----EDFDLIHL-DCPQQPN  176 (221)
T ss_dssp             T-TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHHT---TS----SSC-----TTCEEEEE-CCCCCSS
T ss_pred             C-CCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH---HH----hcC-----CCceEeec-CCCCCCC
Confidence            6 699999999999999999999987543211 11124555554321   11    112     23444444 5999999


Q ss_pred             CCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525          299 GNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       299 ~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      |+|||||||+||+......+.+|+  |||.+|++|+..+..
T Consensus       177 ~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~  217 (221)
T 1euv_A          177 GYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT  217 (221)
T ss_dssp             SSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHh
Confidence            999999999999954433445788  999999999988754

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=281.85  Aligned_cols=176  Identities=23%  Similarity=0.322  Sum_probs=136.6

Q ss_pred             hcccCCCCCccccCchhHHHHHHHHHH-cCCC---CCCcceeeccccchhccc----------------cccCcc---cc
Q 047525          145 AYRKLKENQIFHNVVKKIISCYAEYLT-GKES---LKQDYETRNWFLPTLFGQ----------------IVANVS---GV  201 (340)
Q Consensus       145 ~~~sL~pg~wLNd~vD~IInfYl~~L~-~~~~---~~kv~~fnsfF~~~L~~~----------------g~~~vk---k~  201 (340)
                      ++.+|.|++|||   |+|||||++||. ++..   .+++|+||||||++|...                +|.+|+   ++
T Consensus        39 Dl~~L~~~~wLN---D~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrk  115 (323)
T 3eay_A           39 DLECLEEGEFLN---DVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRH  115 (323)
T ss_dssp             HHHTTSTTCCCC---HHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTT
T ss_pred             HHHhhCCCCCcC---HHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhh
Confidence            468999999999   999999999996 3422   358999999999999753                467776   77


Q ss_pred             ccCCcCCCCceEEEEeecCCCCceEEEEEEeCC-----------------------------------------------
Q 047525          202 STIDRSDIEISIYVPLYDGLAKHWYLAIMNIKD-----------------------------------------------  234 (340)
Q Consensus       202 ~dlf~kd~~~~IfIPIN~~~~~HW~L~VId~~~-----------------------------------------------  234 (340)
                      ++||++|+   ||||||.  +.||+|+|||++.                                               
T Consensus       116 vdlf~kD~---I~IPIn~--~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  190 (323)
T 3eay_A          116 INIFNKDY---IFVPVNE--SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQ  190 (323)
T ss_dssp             CCGGGCSE---EEEEEEE--TTEEEEEEEECTTCSSCBCC----------------------------------------
T ss_pred             cccccCCE---EEEecCC--CCceEEEEEecCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999996   9999999  5999999999873                                               


Q ss_pred             ---------------CceEEecCCCCCC-CCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCCC
Q 047525          235 ---------------KTADIWDSLPNSE-IEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPN  298 (340)
Q Consensus       235 ---------------~~I~~~DSL~~~~-~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~N  298 (340)
                                     +||.|||||++.. ....   ..|+.||..+.-. ++    .....++...|....|. +|+|.|
T Consensus       191 ~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~---~~Lr~YL~~E~~~-k~----~~~~~f~~~~~~~~~~~-~P~Q~N  261 (323)
T 3eay_A          191 STESNMSVPKKMCKRPCILILDSLKAASVQNTV---QNLREYLEVEWEV-KL----KTHRQFSKTNMVDLCPK-VPKQDN  261 (323)
T ss_dssp             ---------CCCCBCSEEEEECSSCCSSHHHHH---HHHHHHHHHHHHH-HH----SSCCCCCTTTSCEECCB-CCCCCS
T ss_pred             ccccccccccccCCCCeEEEEECCCCCCcchHH---HHHHHHHHHHHHh-hc----CCCcCCCHhHceeccCC-CCCcCC
Confidence                           2799999999964 3333   4889999877521 21    12445666778777776 999999


Q ss_pred             CCchHHHHHHHcccccccc----------CCCCC--CCCcccHHHHHHHhh
Q 047525          299 GNDCGLYVMKFMETPCELL----------FPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       299 ~~DCGVFVl~fae~~~~~l----------~~~F~--dip~iR~~i~~~~~~  337 (340)
                      ++|||||||+||+..+...          ...|.  +|...|..|+.++.+
T Consensus       262 ~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~  312 (323)
T 3eay_A          262 SSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILK  312 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999322222          12454  677888888888764

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.98  E-value=1.9e-33  Score=255.96  Aligned_cols=168  Identities=17%  Similarity=0.251  Sum_probs=124.3

Q ss_pred             hcccCCCCCccccCchhHHHHHHHHHHcCC---CCCCcceee---ccccchhccccccCcc---ccccCCcCCCCceEEE
Q 047525          145 AYRKLKENQIFHNVVKKIISCYAEYLTGKE---SLKQDYETR---NWFLPTLFGQIVANVS---GVSTIDRSDIEISIYV  215 (340)
Q Consensus       145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~~---~~~kv~~fn---sfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfI  215 (340)
                      ++.+|+|++|||   |+|||||++||.++.   ..+++++++   ||||..+..  ++.++   +.++++++++   |||
T Consensus        17 Dl~~L~~~~wLN---D~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~~--~~~v~~~~~~~~l~~~~~---i~i   88 (212)
T 2bkr_A           17 DVSLLDPPSWLN---DHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSN--PAEIAMFLEPLDLPNKRV---VFL   88 (212)
T ss_dssp             HHHTTSTTSCCB---HHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCC--HHHHHHHHGGGTGGGCSE---EEE
T ss_pred             HHhhcCCCCCcC---HHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCCC--HHHHHHHhcccccccCCE---EEE
Confidence            578999999999   999999999999762   246799999   999966643  34444   6779999995   999


Q ss_pred             EeecC-----CCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCC
Q 047525          216 PLYDG-----LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYP  290 (340)
Q Consensus       216 PIN~~-----~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p  290 (340)
                      |||.+     ++.||+|+||+.++++|.|||||++.+.....   .+...|.  .++ ..        .+.  .|.+..+
T Consensus        89 PIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~~~---~l~~~l~--~~l-~~--------~~~--~~~~~~~  152 (212)
T 2bkr_A           89 AINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAK---QVAEKLE--AFL-GR--------KGD--KLAFVEE  152 (212)
T ss_dssp             EEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHH---HHHHHHH--HHH-SC--------TTC--CCCEEEC
T ss_pred             EEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHHHH---HHHHHHH--HHh-CC--------ccc--cceEeEC
Confidence            99962     37999999999999999999999987544322   2222222  222 11        111  2333334


Q ss_pred             CCcCCCCCCCchHHHHHHHccccc-ccc-------CCCCC--CCCcccHHHHHHHhh
Q 047525          291 NNVPIQPNGNDCGLYVMKFMETPC-ELL-------FPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       291 ~~vPqQ~N~~DCGVFVl~fae~~~-~~l-------~~~F~--dip~iR~~i~~~~~~  337 (340)
                       ++|||.||+|||||||+||+... ..+       ...|+  +|+.+|..|++++.+
T Consensus       153 -~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~  208 (212)
T 2bkr_A          153 -KAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             -CCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence             59999999999999999999322 111       12455  899999999999875

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.96  E-value=2e-30  Score=232.30  Aligned_cols=160  Identities=14%  Similarity=0.149  Sum_probs=107.2

Q ss_pred             CCCccccCchhHHHHHHHHHHcCCC---C-CCcceeec---cccchhccccccCccccccCCc-CCCCceEEEEeecCCC
Q 047525          151 ENQIFHNVVKKIISCYAEYLTGKES---L-KQDYETRN---WFLPTLFGQIVANVSGVSTIDR-SDIEISIYVPLYDGLA  222 (340)
Q Consensus       151 pg~wLNd~vD~IInfYl~~L~~~~~---~-~kv~~fns---fF~~~L~~~g~~~vkk~~dlf~-kd~~~~IfIPIN~~~~  222 (340)
                      .|+|||   |+|||||++||.++..   . .+++++++   ||+......++..+.+..+.++ +++   ||||||.+ +
T Consensus         1 ~~~WLN---D~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---i~iPin~~-~   73 (186)
T 2oix_A            1 ATSWLL---DGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDIPPI---VFLPINQP-N   73 (186)
T ss_dssp             -CCCCC---HHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTSCSE---EEEEEEET-T
T ss_pred             CCCCcC---hHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccccCE---EEEEEeCC-C
Confidence            378999   9999999999996521   1 34888884   5554444344555554445555 885   99999995 7


Q ss_pred             CceEEEEEEeCCCce---EEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCCCC
Q 047525          223 KHWYLAIMNIKDKTA---DIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQPNG  299 (340)
Q Consensus       223 ~HW~L~VId~~~~~I---~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~N~  299 (340)
                      .||+|+||+.+++++   .|||||++.+.. ..   .+...+.  .++         +...  ..  +. +.++|||.||
T Consensus        74 ~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~-~~---~l~~~l~--~~l---------~~~~--~~--~~-~~~~PqQ~Ng  133 (186)
T 2oix_A           74 AHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ-QR---YLADMAA--YHL---------GLDY--QQ--TH-EMPIAIQSDG  133 (186)
T ss_dssp             TEEEEEEEECSSTTSCEEEEECCCSSCCHH-HH---HHHHHHH--HHT---------TCCG--GG--CE-EECBCCCC--
T ss_pred             CccEEEEEECCCCeeeeeEEEcCCCCCCHH-HH---HHHHHHH--HHh---------CCCc--cc--cc-cCCCCCCCCC
Confidence            999999999999999   999999985422 11   1222211  112         1111  11  12 2359999999


Q ss_pred             CchHHHHHHHccccccc-------cCCCCC--CCCcccHHHHHHHhh
Q 047525          300 NDCGLYVMKFMETPCEL-------LFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       300 ~DCGVFVl~fae~~~~~-------l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      +|||||||+||+..+..       ....|+  +|...|..|++++++
T Consensus       134 ~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~  180 (186)
T 2oix_A          134 YSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQ  180 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHh
Confidence            99999999999932211       112344  899999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	2e-09
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	4e-07
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	7e-06
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	7e-05

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 17/152 (11%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDRSDIEIS--IYVPLYD 219
           II  + +Y+  ++S        ++F   L  +    V       ++ I+    I+ P+  
Sbjct: 53  IIEFFMKYI--EKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINL 110

Query: 220 GLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSD 279
               HW L I+++K KT    DSL N          +    L  L   +  +       D
Sbjct: 111 N-QSHWALGIIDLKKKTIGYVDSLSN------GPNAMSFAILTDLQKYVMEESKHTIGED 163

Query: 280 WYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
           +           + P QPNG DCG+YV     
Sbjct: 164 FDL------IHLDCPQQPNGYDCGIYVCMNTL 189

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQIV--ANVSGVSTIDRSDIEIS---IYVP 216
           +I+ Y   L   E  K+          T F   +       V    +         I VP
Sbjct: 52  VINFYMNLL--VERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVP 109

Query: 217 LYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNF 276
           ++     HW L +++++ K     DS+            I +  L  L          N 
Sbjct: 110 IHRK--VHWSLVVIDLRKKCLKYLDSMGQ------KGHRICEILLQYLQDESKTK--RNS 159

Query: 277 PSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
             +        + P+ +P Q NG+DCG++  K+ +
Sbjct: 160 DLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYAD 194

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQ--IVANVSGVSTIDRSDIEIS---IYVP 216
           II+ Y   L   E  K+          T F      A    V    +     S   + VP
Sbjct: 52  IINFYMNML--MERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVP 109

Query: 217 LYDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNF 276
           ++ G+  HW LA+++ + K    +DS+          + +++           ++     
Sbjct: 110 IHLGV--HWCLAVVDFRKKNITYYDSMGGIN--NEACRILLQYLKQESIDKKRKEFDT-- 163

Query: 277 PSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
            + W            +P Q NG+D G++  K+ +
Sbjct: 164 -NGW---QLFSKKSQEIPQQMNGSDAGMFACKYAD 194

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 30/161 (18%)

Query: 162 IISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVSGVSTIDR--SDIEIS----IYV 215
           II    EY     S   D      F+     Q +   S  + I      +++     +++
Sbjct: 31  IIGFAFEYF--ANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFL 88

Query: 216 PLYDGLA-----KHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFR 270
            + D         HW L +      +   +DS   S     H +++ ++    L      
Sbjct: 89  AINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSN--SVHAKQVAEKLEAFLG----- 141

Query: 271 DIAFNFPSDWYFADFDILYPNNVPIQPNGNDCGLYVMKFME 311
                        D         P Q N  DCG+YV+   E
Sbjct: 142 ----------RKGDKLAFVEEKAPAQQNSYDCGMYVICNTE 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	100.0
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	100.0
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.97
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.95
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	92.37

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-34  Score=259.09  Aligned_cols=172  Identities=22%  Similarity=0.331  Sum_probs=131.2

Q ss_pred             hhcccCCCCCccccCchhHHHHHHHHHHcCCCCCCcceeeccccchhccccccCcc-----ccccCCcCCCCceEEEEee
Q 047525          144 FAYRKLKENQIFHNVVKKIISCYAEYLTGKESLKQDYETRNWFLPTLFGQIVANVS-----GVSTIDRSDIEISIYVPLY  218 (340)
Q Consensus       144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~~~~~kv~~fnsfF~~~L~~~g~~~vk-----k~~dlf~kd~~~~IfIPIN  218 (340)
                      .++++|.||+|||   |+|||||++||.++  .++++.++|||++.+...++..++     +..+++++++   ||||||
T Consensus        38 ~Dl~~L~~~~WLn---D~iIn~y~~~l~~~--~~~~~~~~s~f~~~l~~~~~~~~~~w~~~~~~~~~~~~~---i~iPin  109 (221)
T d1euva_          38 RDFKTLAPRRWLN---DTIIEFFMKYIEKS--TPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDK---IFTPIN  109 (221)
T ss_dssp             HHHGGGSTTCCCB---HHHHHHHHHHHHHH--STTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSE---EEEEEE
T ss_pred             HHHhhcCCCcccC---cHHHHHHHHHHHhc--CCCeEEeccHHHHhHhhhchHHHHHHHHhcccchhhcce---eEeeEe
Confidence            3478999999999   99999999999866  367899999999999998888875     4568999995   999999


Q ss_pred             cCCCCceEEEEEEeCCCceEEecCCCCCCCCccc-HHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCCcCCCC
Q 047525          219 DGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNH-RQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNNVPIQP  297 (340)
Q Consensus       219 ~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~-~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~vPqQ~  297 (340)
                      .+ +.||+|+||++++++|.+||||++....... ....+++++..+    .+   ....     ..|.+.. .++|||.
T Consensus       110 ~~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~~----~~---~~~~-----~~~~~~~-~~~PqQ~  175 (221)
T d1euva_         110 LN-QSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEE----SK---HTIG-----EDFDLIH-LDCPQQP  175 (221)
T ss_dssp             ET-TTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHHHHHHHHHHHH----TT---SSSC-----TTCEEEE-ECCCCCS
T ss_pred             cc-cceEEEEEeeccccceeeeccccCCCcHHHHHHHHHHHHHHHHH----HH---hhcC-----CCCeeee-ccCCCCC
Confidence            86 7999999999999999999999987654332 011222222211    11   0111     2344443 3599999


Q ss_pred             CCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhh
Q 047525          298 NGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       298 N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~  337 (340)
                      |++|||||||+||+......+.+|+  |||.+|+.|+..+-.
T Consensus       176 N~~DCGvfvl~~~~~~~~~~~~~~~q~d~~~~R~~i~~~il~  217 (221)
T d1euva_         176 NGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILT  217 (221)
T ss_dssp             SSSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999943333345677  999999999988754

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=252.86  Aligned_cols=177  Identities=20%  Similarity=0.308  Sum_probs=137.8

Q ss_pred             hhcccCCCCCccccCchhHHHHHHHHHHcC---CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEEe
Q 047525          144 FAYRKLKENQIFHNVVKKIISCYAEYLTGK---ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVPL  217 (340)
Q Consensus       144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~---~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIPI  217 (340)
                      -++++|+|++|||   |+|||||+++|.++   ...++++++++||++.+...++..++   +..+++++++   ||+||
T Consensus        37 ~Dl~~L~~~~WLn---D~iI~~y~~~l~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~l~~~~~---i~iPi  110 (226)
T d1th0a_          37 GDIQTLKNYHWLN---DEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEI---ILVPI  110 (226)
T ss_dssp             HHHGGGSTTCCCC---HHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSE---EEEEE
T ss_pred             HHHHhcCCCcccc---cHHHHHHHHHHHHhhhhccCCceEEecHHHHHHHhhccHHHHHHHHhccCcccCCE---EEEeE
Confidence            3578999999999   99999999999854   22467899999999999988888776   5679999995   99999


Q ss_pred             ecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccce--eeCCCCcCC
Q 047525          218 YDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFD--ILYPNNVPI  295 (340)
Q Consensus       218 N~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~--i~~p~~vPq  295 (340)
                      |.  +.||+|+||++++++|.+|||+++.+.....   .+..++..+... .      .........|+  ...+..+||
T Consensus       111 n~--~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~---~i~~~l~~~~~~-~------~~~~~~~~~~~~~~~~~~~~pq  178 (226)
T d1th0a_         111 HR--KVHWSLVVIDLRKKCLKYLDSMGQKGHRICE---ILLQYLQDESKT-K------RNSDLNLLEWTHHSMKPHEIPQ  178 (226)
T ss_dssp             EE--TTEEEEEEEETTTTEEEEECTTCCCCHHHHH---HHHHHHHHHHHH-H------TSCCCCGGGCEEEECCTTTSCC
T ss_pred             Ec--CCceEEEEEEeccceEEEeccccCCChHHHH---HHHHHHHHHHHH-h------hCCCcCcccceeeeeccCCCCC
Confidence            99  5999999999999999999999988655444   555565443211 1      12233333443  345667999


Q ss_pred             CCCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhhh
Q 047525          296 QPNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVEDR  338 (340)
Q Consensus       296 Q~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~~  338 (340)
                      |.||+|||||||+||+......+.+|+  ||+.+|.+|+..+-.+
T Consensus       179 Q~N~~DCGvfvl~~~~~~~~~~~~~~tq~di~~~R~~i~~el~~~  223 (226)
T d1th0a_         179 QLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQ  223 (226)
T ss_dssp             CCSSSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999953333344676  9999999999876543

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-32  Score=246.39  Aligned_cols=177  Identities=19%  Similarity=0.294  Sum_probs=136.9

Q ss_pred             hhcccCCCCCccccCchhHHHHHHHHHHcC---CCCCCcceeeccccchhccccccCcc---ccccCCcCCCCceEEEEe
Q 047525          144 FAYRKLKENQIFHNVVKKIISCYAEYLTGK---ESLKQDYETRNWFLPTLFGQIVANVS---GVSTIDRSDIEISIYVPL  217 (340)
Q Consensus       144 ~~~~sL~pg~wLNd~vD~IInfYl~~L~~~---~~~~kv~~fnsfF~~~L~~~g~~~vk---k~~dlf~kd~~~~IfIPI  217 (340)
                      .|+++|.|++|||   |+|||||+++|.++   ...+++++++|+|+..+...++..++   +..+++++++   |||||
T Consensus        37 ~Dl~~L~~~~wLn---d~iI~~y~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---I~iPi  110 (225)
T d2iy1a1          37 KDIQTLNHLNWLN---DEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDI---LLVPI  110 (225)
T ss_dssp             HHHHTTSTTCCCB---HHHHHHHHHHHHHHTTSTTSCCEEECCTTHHHHHHHSCGGGTGGGGTTCCGGGSSE---EEEEE
T ss_pred             HHHHHhcCCcchh---hHHHHHHHHHHHHHhhhhccCceEEeccHHHhhhcccCHHHHHHHHhccccccCCE---EEEEE
Confidence            3578999999999   99999999999854   22457899999999998887777776   5668999995   99999


Q ss_pred             ecCCCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccee--eCCCCcCC
Q 047525          218 YDGLAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDI--LYPNNVPI  295 (340)
Q Consensus       218 N~~~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i--~~p~~vPq  295 (340)
                      |.  +.||+|+||+++.++|.+||||++.+.....   .+..++.... . ..     ....++...|+.  ..+.++||
T Consensus       111 n~--~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~---~i~~~l~~~~-~-~~-----~~~~~~~~~~~~~~~~~~~~pq  178 (225)
T d2iy1a1         111 HL--GVHWCLAVVDFRKKNITYYDSMGGINNEACR---ILLQYLKQES-I-DK-----KRKEFDTNGWQLFSKKSQEIPQ  178 (225)
T ss_dssp             EC--SSCEEEEEEETTTTEEEEECTTCCCCHHHHH---HHHHHHHHHH-H-HH-----HSSCCCCTTCEEEECCTTTSCC
T ss_pred             eC--CCCEEEEEEEeccceEEEEecCCCCchHHHH---HHHHHHHHHH-H-Hh-----ccCccCcccceecccccccCCC
Confidence            98  6999999999999999999999998765544   4444544322 1 11     123344556654  34557999


Q ss_pred             CCCCCchHHHHHHHccccccccCCCCC--CCCcccHHHHHHHhhh
Q 047525          296 QPNGNDCGLYVMKFMETPCELLFPTYK--SLPNVDWSILAVVEDR  338 (340)
Q Consensus       296 Q~N~~DCGVFVl~fae~~~~~l~~~F~--dip~iR~~i~~~~~~~  338 (340)
                      |.||+|||||||+||+......+.+|+  ||+.+|+.|+..|..+
T Consensus       179 Q~Ng~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~~~  223 (225)
T d2iy1a1         179 QMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR  223 (225)
T ss_dssp             CCSSSTHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhC
Confidence            999999999999999943222233566  9999999999988765

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-29  Score=225.12  Aligned_cols=170  Identities=16%  Similarity=0.214  Sum_probs=118.4

Q ss_pred             hcccCCCCCccccCchhHHHHHHHHHHcCC---CCCCcceeeccccchhcc-ccccCcc---ccccCCcCCCCceEEEEe
Q 047525          145 AYRKLKENQIFHNVVKKIISCYAEYLTGKE---SLKQDYETRNWFLPTLFG-QIVANVS---GVSTIDRSDIEISIYVPL  217 (340)
Q Consensus       145 ~~~sL~pg~wLNd~vD~IInfYl~~L~~~~---~~~kv~~fnsfF~~~L~~-~g~~~vk---k~~dlf~kd~~~~IfIPI  217 (340)
                      |+++|+||+|||   |+|||||++||..+.   ....+++++++++..+.. .++..++   +..+++++++   ||+||
T Consensus        17 D~~~L~~~~WLN---D~iId~y~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ifiPI   90 (212)
T d2bkra1          17 DVSLLDPPSWLN---DHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRV---VFLAI   90 (212)
T ss_dssp             HHHTTSTTSCCB---HHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCCCHHHHHHHHGGGTGGGCSE---EEEEE
T ss_pred             HHhhcCCCCCcC---HHHHHHHHHHHHHhhhccccCcEEEEChHHHHHHhccccHHHHHHHHhccChhhccE---EEEec
Confidence            578999999999   999999999998652   134577777766655543 2233333   5668999995   99999


Q ss_pred             ecC-----CCCceEEEEEEeCCCceEEecCCCCCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCCCccccceeeCCCC
Q 047525          218 YDG-----LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNHRQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDILYPNN  292 (340)
Q Consensus       218 N~~-----~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~  292 (340)
                      |.+     +|.||+|+||+++.++|++|||+++.+.....   .+...+...  + ..     ..     ..+.+..+ .
T Consensus        91 n~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~---~~~~~l~~~--~-~~-----~~-----~~~~~~~~-~  153 (212)
T d2bkra1          91 NDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAK---QVAEKLEAF--L-GR-----KG-----DKLAFVEE-K  153 (212)
T ss_dssp             ECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHHHH---HHHHHHHHH--H-SC-----TT-----CCCCEEEC-C
T ss_pred             ccccccccCcceeeeeeeccccceEEEecCCCcCCHHHHH---HHHHHHHHH--h-cc-----cc-----Cceeeeec-c
Confidence            964     26899999999999999999999987654433   233333211  1 10     11     12233333 4


Q ss_pred             cCCCCCCCchHHHHHHHcccccc-ccCC-------CCC--CCCcccHHHHHHHhh
Q 047525          293 VPIQPNGNDCGLYVMKFMETPCE-LLFP-------TYK--SLPNVDWSILAVVED  337 (340)
Q Consensus       293 vPqQ~N~~DCGVFVl~fae~~~~-~l~~-------~F~--dip~iR~~i~~~~~~  337 (340)
                      +|+|.||+|||||||+||+.... ....       .++  +|+.+|..|+.++..
T Consensus       154 ~p~Q~N~~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~l~~lI~~  208 (212)
T d2bkra1         154 APAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             CCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCChHHHHHHHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999983221 1111       133  788999999988864

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=92.37  E-value=0.024  Score=48.07  Aligned_cols=80  Identities=16%  Similarity=0.323  Sum_probs=50.2

Q ss_pred             eecC----CCCceEEEEEEeCCCceEEecCCCCCCCCccc-----HHHHHHHHHHHHHHHhhhhcccCCCCCCcccccee
Q 047525          217 LYDG----LAKHWYLAIMNIKDKTADIWDSLPNSEIEPNH-----RQEIVKQNLHALDLVLFRDIAFNFPSDWYFADFDI  287 (340)
Q Consensus       217 IN~~----~~~HW~L~VId~~~~~I~~~DSL~~~~~~~~~-----~~~~lk~~L~~~~~l~~~~~~~~~~~~~~~~~~~i  287 (340)
                      ||..    ||.||.-...++...+++++|.+|-+..+-..     ...+|++-     .+..       ..+-   -.++
T Consensus        42 VNT~~retGG~HWlA~Aw~P~s~t~Y~FDPfGfsd~~L~q~Y~FeY~~llkRS-----AL~~-------spdR---Cvtl  106 (203)
T d1nlna_          42 VNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRS-----AIAS-------SPDR---CITL  106 (203)
T ss_dssp             EESSCTTTCCCCEEEEEEETTTTEEEEECTTCCCHHHHHHHHCCCCHHHHHHH-----HHHH-------CTTS---EEEE
T ss_pred             EecCCcccCceeeEEeEecCCcCeEEEECCCCCCHHHHHHHhhhhHHHHHHHH-----hhcC-------CCCc---eEEE
Confidence            6654    68999999999999999999999987432110     01133321     0100       0011   1233


Q ss_pred             eCCCCcCCCCCCCchHHHHHHHcc
Q 047525          288 LYPNNVPIQPNGNDCGLYVMKFME  311 (340)
Q Consensus       288 ~~p~~vPqQ~N~~DCGVFVl~fae  311 (340)
                      +.....-|=+++--||+|.|.|..
T Consensus       107 vkstq~VQcp~SaaCGLFC~lFL~  130 (203)
T d1nlna_         107 EKSTQSVQGPNSAACGLFCCMFLH  130 (203)
T ss_dssp             EEECEECSCTTCCCHHHHHHHHHH
T ss_pred             EeccceecCCCchhHHHHHHHHHH
Confidence            444445566789999999999886