Citrus Sinensis ID: 047538

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MAKEEEKKVREIEDQNDVESENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG
Secondary Structure (PSIPRED)
ccHHHHcccccccccccccccccccccEEEEEEEEccEEEEEccccccccccccccccccccEEEEEEEEEEEccEEEEEEEEccccccEEEEEEccccccccEEEEcccccEEEEEEEcccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccccccccccccHHHHHEEEEEcccEEEEEccccccccccccHccccccccEEEEEEEEEcccEEEEEEEccccccEEEEccccccccccEEEEEccccEEEEEEEccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
MAKEEEKKVReiedqndveseneeTEAIEFVLFQVSECyvylipprksaasyradewnvnKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLrkgelhpvepvidssrYFVLRIEENIGGRLRHAFIgigfrerteaYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHlknkssgrvKSKFFEQGlndlslddkgnrkepviclkplppppaplspataarmspsnspqkfslegsskdaspdstkedskeqhspespntedipdddfgdfqaag
Flexible Loop (DISEMBL)
makeeekkvreiedqndveseneetEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIikledkstgELYARAFlrkgelhpvepvidssrYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHlhlknkssgrvkSKFFEQGlndlslddkgnRKEPVICLKPLPPPPAPLSPATAARMSPSnspqkfslegsskdaspdstkedskeqhspespntedipdddFGDFQAAG
Low Complexity Region (SEG)
MAKEEEKKVREIEDQNDVESENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQGLNDLSLDDKGNRKEPVICLKplppppaplspataaRMSPSNSPQKFSLEGSSKDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG
Disordered region (IsUnstruct)
**************************AIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYL*******************************************************************************************************************************************
Disordered Region (DISOPRED)
**************************AIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMK*************************KEGETLH***************************************************************************************************DDFGDFQAA*
Disordered Region (DISEMBL)
************************TEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKK*************AVDYSLKEGETLHLHLKNKSSGRVKSKFFEQGLNDLSLDDKGNRKEPVICLKPLPPPPAP************************************************DIPDDDFGDFQAAG
Disordered Region (DISPRO)
***********************ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEE********SAVDYSLKEGETLHLHLKN*******************************CLKPL********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q5E9Q4	266	Adaptin ear-binding coat-	yes	no	0.805	0.887	0.358	1e-33
Q8NC96	275	Adaptin ear-binding coat-	yes	no	0.846	0.901	0.352	3e-33
Q3T093	275	Adaptin ear-binding coat-	no	no	0.621	0.661	0.4	4e-33
Q681Q7	272	Uncharacterized protein A	no	no	0.549	0.591	0.441	7e-33
Q6P756	263	Adaptin ear-binding coat-	yes	no	0.812	0.904	0.350	8e-33
Q9CR95	275	Adaptin ear-binding coat-	yes	no	0.839	0.894	0.342	1e-32
P69682	277	Adaptin ear-binding coat-	yes	no	0.627	0.664	0.394	1e-32
Q5R630	275	Adaptin ear-binding coat-	yes	no	0.846	0.901	0.352	2e-32
Q9NVZ3	263	Adaptin ear-binding coat-	no	no	0.556	0.619	0.415	3e-32
Q9D1J1	266	Adaptin ear-binding coat-	no	no	0.825	0.909	0.348	1e-31

>sp|Q5E9Q4|NECP2_BOVIN Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/276 (35%), Positives = 147/276 (53%), Gaps = 40/276 (14%)

Query: 23  EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
           EE E  E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLE
Sbjct: 2   EEAE-YESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLE 60

Query: 83  DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
           D+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+D
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFD 117

Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHL-----KNKSSGRVKS 197
           F  AL DH K++ ++    +  Q       +D S KEG+T+ L++     K+ ++G  ++
Sbjct: 118 FNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIASMKKKDGAAGTPRA 177

Query: 198 KFFEQGLNDLSLDDKGNRKEPVICLKPLPPPP----APLSPATAARMSPSNSPQKFSLEG 253
           +    G   LSL               LPPPP    A L+P +   +S   S  + ++  
Sbjct: 178 RPTSTG--GLSL---------------LPPPPGAKTAALAPLSGEHLSVGGSVVQPAVSP 220

Query: 254 SSKDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDF 289
           SS  A+       S  Q  P +  T DI    +GDF
Sbjct: 221 SSGGAT------VSWPQPKPATTATADI----WGDF 246

Involved in endocytosis.
Bos taurus (taxid: 9913)

>sp|Q8NC96|NECP1_HUMAN Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 19/267 (7%)

Query: 29  EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
           E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct: 8   ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGE 67

Query: 89  LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
           L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct: 68  LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124

Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSKFFEQGLN 205
           DH K++ ++    +  Q+  +   +D   KEG+T+ L   ++ NK  G  K +    G  
Sbjct: 125 DHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRTARGGGL 184

Query: 206 DLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDSTKE 265
            L     G +         +PPP +  S A +  ++P   P K +  GS  D   D    
Sbjct: 185 SLLPPPPGGKVT-------IPPPSS--SVAISNHVTPPPIP-KSNHGGSDADILLD---L 231

Query: 266 DSKEQHSPESPNTEDIPDDDFGDFQAA 292
           DS    +  +P    + +D +GDF  A
Sbjct: 232 DSPAPVTTPAPTPVSVSNDLWGDFSTA 258

Involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q3T093|NECP1_BOVIN Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 23/205 (11%)

Query: 29  EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
           E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct: 8   ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGE 67

Query: 89  LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
           L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct: 68  LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFSDRGDAFDFNVSLQ 124

Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLN 205
           DH K++ ++    +  Q+  S   +D   KEG+T+ L + N   K  G  K K    G  
Sbjct: 125 DHFKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPK--TAGTG 182

Query: 206 DLSLDDKGNRKEPVICLKPLPPPPA 230
            LSL               LPPPP 
Sbjct: 183 GLSL---------------LPPPPG 192

Involved in endocytosis.

Bos taurus (taxid: 9913)

>sp|Q681Q7|Y1390_ARATH Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 9/170 (5%)

Query: 27  AIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKST 86
             E  L  V E  VY IPPR ++  Y+  EW  +   W G L+VVS  + C I+LED ++
Sbjct: 11  TFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNS 70

Query: 87  GELYARAFLRKGEL-HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQA 145
           G+L+A  F+  G   + VEP +DSSRYFVLRI++   GR ++AFIG+GF ER EA+DF  
Sbjct: 71  GDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDD---GRGKYAFIGLGFAERNEAFDFNV 127

Query: 146 ALHDHMKYLDKKKTAE-----EMEQQFQSTSAVDYSLKEGETLHLHLKNK 190
           AL DH KY+ ++K  E     E +       AV++ LKEGET+ +++K K
Sbjct: 128 ALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPK 177

Arabidopsis thaliana (taxid: 3702)

>sp|Q6P756|NECP2_RAT Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2

 Score =  140 bits (354), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/271 (35%), Positives = 138/271 (50%), Gaps = 33/271 (12%)

Query: 23  EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
           EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLE
Sbjct: 2   EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLE 60

Query: 83  DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
           D+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+D
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFD 117

Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQ 202
           F  AL DH K++ ++    +  Q       +D   KEG+T+ +++ N     ++ K    
Sbjct: 118 FNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKINIAN-----MRKKEGAA 172

Query: 203 GLNDLSLDDKGNRKEPVICLKPLPPPPA----PLSPATAARMSPSNSPQKFSLEGSSKDA 258
           G         G        L  LPPPP      L P +  + S  +  Q  S  G + + 
Sbjct: 173 GAPRTRPASAGG-------LSLLPPPPGGKMSTLIPPSGEQFSGGSLVQPVSGSGGATEL 225

Query: 259 SPDSTKEDSKEQHSPESPNTEDIPDDDFGDF 289
            P         Q  P +  T DI    +GDF
Sbjct: 226 WP---------QSKPAAAATADI----WGDF 243

Involved in endocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9CR95|NECP1_MOUSE Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 135/269 (50%), Gaps = 23/269 (8%)

Query: 29  EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
           E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct: 8   ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67

Query: 89  LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
           L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct: 68  LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124

Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGR-VKSKFFEQGLNDL 207
           DH K++ ++    +  Q+  +   +D   KEG+T+ L + N ++ +   SK    G   L
Sbjct: 125 DHFKWVKQETEISKESQEMDNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPRASGTGGL 184

Query: 208 SLDDKGNRKEPVICLKPLPPPPAP----LSPATAARMSPSNSPQKFSLEGSSKDASPDST 263
           SL               LPPPP        P+++  +S   +P          + S    
Sbjct: 185 SL---------------LPPPPGGKVTIPPPSSSVAISNHVTPPPIPKSNHGGNDSDILL 229

Query: 264 KEDSKEQHSPESPNTEDIPDDDFGDFQAA 292
             DS    S  +P      +D +GDF  A
Sbjct: 230 DLDSPAPVSTSAPAPVSTSNDLWGDFSTA 258

Involved in endocytosis.

Mus musculus (taxid: 10090)

>sp|P69682|NECP1_RAT Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 113/203 (55%), Gaps = 19/203 (9%)

Query: 29  EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
           E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct: 8   ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67

Query: 89  LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
           L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct: 68  LFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124

Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGR-VKSKFFEQGLNDL 207
           DH K++ ++    +  Q+  S   +D   KEG+T+ L + N ++ +   SK    G   L
Sbjct: 125 DHFKWVKQETEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPRASGTGGL 184

Query: 208 SLDDKGNRKEPVICLKPLPPPPA 230
           SL               LPPPP 
Sbjct: 185 SL---------------LPPPPG 192

Involved in endocytosis.

Rattus norvegicus (taxid: 10116)

>sp|Q5R630|NECP1_PONAB Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 138/267 (51%), Gaps = 19/267 (7%)

Query: 29  EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
           E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct: 8   ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGE 67

Query: 89  LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
           L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct: 68  LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124

Query: 149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSKFFEQGLN 205
           DH K++ ++    +  Q+  +   +D   KEG+T+ L   ++ NK  G  K +    G  
Sbjct: 125 DHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGASKPRTARGGGL 184

Query: 206 DLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDSTKE 265
            L     G +         +PPP +  S A +  ++P   P K +  GS  D   D    
Sbjct: 185 SLLPPPPGGKVT-------IPPPSS--SVAISNHVTPPPIP-KSNHGGSDADILLD---L 231

Query: 266 DSKEQHSPESPNTEDIPDDDFGDFQAA 292
           DS    +  +P      +D +GDF  A
Sbjct: 232 DSPAPVTTPAPTPVSASNDLWGDFSTA 258

Involved in endocytosis.

Pongo abelii (taxid: 9601)

>sp|Q9NVZ3|NECP2_HUMAN Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 102/166 (61%), Gaps = 3/166 (1%)

Query: 24  ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLED 83
           E    E VL    + +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED
Sbjct: 2   EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLED 61

Query: 84  KSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDF 143
           +++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+DF
Sbjct: 62  RTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFDF 118

Query: 144 QAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 189
             AL DH K++ ++    +  Q       +D   KEG+T+ L++ N
Sbjct: 119 NVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIAN 164

Involved in endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9D1J1|NECP2_MOUSE Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 141/270 (52%), Gaps = 28/270 (10%)

Query: 23  EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
           EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLE
Sbjct: 2   EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLE 60

Query: 83  DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
           D+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIG+GF +R +A+D
Sbjct: 61  DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGLGFGDRGDAFD 117

Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQ 202
           F  AL DH K++ ++    +  Q       +D   K+G+T+ +++ N     ++ K    
Sbjct: 118 FNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIAN-----MRKKEGAA 172

Query: 203 GLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASPDS 262
           G         G        L  LPPPP   S   +  + PS   ++ S+ GS    +  S
Sbjct: 173 GTPRARPTSAGG-------LSLLPPPPGGKS---STVIPPSG--EQLSVGGSLVQPAVVS 220

Query: 263 TKEDSKE---QHSPESPNTEDIPDDDFGDF 289
               + E   Q  P +  T DI    +GDF
Sbjct: 221 GSGGATELWPQSKPAAAATADI----WGDF 246

Involved in endocytosis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
255568289	546	Adaptin ear-binding coat-associated prot	0.962	0.516	0.777	1e-117
224145256	283	predicted protein [Populus trichocarpa]	0.928	0.961	0.772	1e-116
224135849	284	predicted protein [Populus trichocarpa]	0.941	0.971	0.762	1e-114
356543898	288	PREDICTED: adaptin ear-binding coat-asso	0.928	0.944	0.766	1e-110
359485436	499	PREDICTED: uncharacterized protein LOC10	0.924	0.543	0.770	1e-109
302143403	287	unnamed protein product [Vitis vinifera]	0.924	0.944	0.770	1e-108
359806921	286	uncharacterized protein LOC100813301 [Gl	0.921	0.944	0.733	1e-101
343172180	283	adaptin ear-binding coat-associated prot	0.877	0.908	0.702	5e-98
343172178	283	adaptin ear-binding coat-associated prot	0.877	0.908	0.702	6e-98
297820692	297	hypothetical protein ARALYDRAFT_486311 [	0.931	0.919	0.699	1e-97

>gi|255568289|ref|XP_002525119.1| Adaptin ear-binding coat-associated protein, putative [Ricinus communis] gi|223535578|gb|EEF37246.1| Adaptin ear-binding coat-associated protein, putative [Ricinus communis]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/283 (77%), Positives = 246/283 (86%), Gaps = 1/283 (0%)

Query: 11  EIEDQNDVESENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKV 70
           E++D ND E E EETEAIE VLF VSECYVYLIPPRKSAAS RADEWNVNKWAWEGMLKV
Sbjct: 265 EVKDLNDQEKETEETEAIELVLFHVSECYVYLIPPRKSAASCRADEWNVNKWAWEGMLKV 324

Query: 71  VSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFI 130
           +SKGEECIIKLEDK+TGELYARAFLR GE HPVEPVIDSSRYFVLRIEENIGGRLRHAFI
Sbjct: 325 ISKGEECIIKLEDKTTGELYARAFLRDGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFI 384

Query: 131 GIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNK 190
           GIGFRERTEAYDFQAALHDHMKYL+KKKTAEEMEQ FQ TS VDYSLKEGETL L +KNK
Sbjct: 385 GIGFRERTEAYDFQAALHDHMKYLNKKKTAEEMEQHFQKTSTVDYSLKEGETLVLQIKNK 444

Query: 191 SSGRVKSKFFEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFS 250
           S   +KSK  +QGLN+LSL++KG +KE ++ +K  PPPPAP+SP T+ R  PS+ P K S
Sbjct: 445 SGSGMKSKILDQGLNNLSLEEKGEQKELILGIKLPPPPPAPVSPVTSPRF-PSDLPPKIS 503

Query: 251 LEGSSKDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
           L+G+S D SP   KE++KEQHSP++ +T+DIPDDDFGDFQAAG
Sbjct: 504 LDGTSIDNSPRLRKEEAKEQHSPDNESTQDIPDDDFGDFQAAG 546

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145256|ref|XP_002325579.1| predicted protein [Populus trichocarpa] gi|222862454|gb|EEE99960.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/273 (77%), Positives = 246/273 (90%), Gaps = 1/273 (0%)

Query: 21  ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
           E+EETEAIE +L+QVSECYVY+IPPRKSAASYRADEW+VNKWAWEG LKV+SKGEECII+
Sbjct: 12  ESEETEAIELILYQVSECYVYVIPPRKSAASYRADEWDVNKWAWEGTLKVISKGEECIIR 71

Query: 81  LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 140
           LEDK+TGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA
Sbjct: 72  LEDKTTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 131

Query: 141 YDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFF 200
           YDFQAALHDHMKYLDKKKTAEEMEQ FQ TS+VDYSLKEGETL L +KNK  G VKSKFF
Sbjct: 132 YDFQAALHDHMKYLDKKKTAEEMEQHFQETSSVDYSLKEGETLVLQMKNKPRGSVKSKFF 191

Query: 201 EQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASP 260
           EQGLN+LSL+ K + KEP++ ++  PPPPAP SPAT+ ++SPSN P K +L+G+S + SP
Sbjct: 192 EQGLNNLSLEGKSDGKEPLLSIR-PPPPPAPPSPATSVQISPSNLPPKITLDGNSTEKSP 250

Query: 261 DSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
           +  K+++++QH P++ +++DI DDDFGDFQAAG
Sbjct: 251 NLAKDEAEQQHFPDNESSQDIQDDDFGDFQAAG 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135849|ref|XP_002327319.1| predicted protein [Populus trichocarpa] gi|222835689|gb|EEE74124.1| predicted protein [Populus trichocarpa]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/278 (76%), Positives = 249/278 (89%), Gaps = 2/278 (0%)

Query: 16  NDVESENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGE 75
           ND+ESE  ETEAIE +LFQVSECYVY+IPPRKSAASYRADEW+VNKWAWEG LKV+SKGE
Sbjct: 9   NDIESE--ETEAIELILFQVSECYVYMIPPRKSAASYRADEWDVNKWAWEGTLKVISKGE 66

Query: 76  ECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFR 135
           ECII+LEDK+TGELYARAFLR G+LHPVEPV+DSSRYFVLRIEENIGGRLRHAFIGIGFR
Sbjct: 67  ECIIRLEDKTTGELYARAFLRNGDLHPVEPVLDSSRYFVLRIEENIGGRLRHAFIGIGFR 126

Query: 136 ERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRV 195
           ER EAYDFQAALHDHMKYLDKKKTAEEM+Q FQ+TS+VDYSLKEGET+ L +KNK  G V
Sbjct: 127 ERAEAYDFQAALHDHMKYLDKKKTAEEMDQHFQTTSSVDYSLKEGETIVLQIKNKPRGSV 186

Query: 196 KSKFFEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSS 255
           KSK FEQGLN+LSL++  +RKEP++ ++P PPPPAPLSPAT+ + SPSN P K +LEG+S
Sbjct: 187 KSKIFEQGLNNLSLEENSDRKEPLLSIRPPPPPPAPLSPATSVQNSPSNLPPKITLEGTS 246

Query: 256 KDASPDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
            + SP  TK+++++QH P++ +++DI DDDFGDFQAAG
Sbjct: 247 TEKSPYLTKDEAEQQHFPDNESSQDIQDDDFGDFQAAG 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543898|ref|XP_003540395.1| PREDICTED: adaptin ear-binding coat-associated protein 2-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/274 (76%), Positives = 235/274 (85%), Gaps = 2/274 (0%)

Query: 21  ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
           E+E+ E IE VLFQV ECYVY+IPPRKSAASYRADEW+VNKWAWEG+LKV SKGEECIIK
Sbjct: 16  ESEDAEPIELVLFQVPECYVYIIPPRKSAASYRADEWDVNKWAWEGILKVTSKGEECIIK 75

Query: 81  LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 140
           LEDKSTGELYARAFLR GE HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA
Sbjct: 76  LEDKSTGELYARAFLRNGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 135

Query: 141 YDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLK-NKSSGRVKSKF 199
           YDFQAALHDHMKYL+KKKTAEEMEQ +Q TS+VDYSLKEGETL L +K NKS   VKSKF
Sbjct: 136 YDFQAALHDHMKYLNKKKTAEEMEQHYQQTSSVDYSLKEGETLVLQIKTNKSGSSVKSKF 195

Query: 200 FEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDAS 259
           FE GLN  S ++K   KE +  +K  PPPPAPLSP  AA+ SP+NSP K SLE +SK  +
Sbjct: 196 FELGLNK-SPEEKNGGKESIPSIKLPPPPPAPLSPVFAAQKSPTNSPTKLSLEKTSKVET 254

Query: 260 PDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
           P + KED++ ++SPE+ +TED+PDDDFGDFQAAG
Sbjct: 255 PKTVKEDTEHENSPENRSTEDVPDDDFGDFQAAG 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485436|ref|XP_002280009.2| PREDICTED: uncharacterized protein LOC100245387 [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/274 (77%), Positives = 232/274 (84%), Gaps = 3/274 (1%)

Query: 21  ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
           ++EETEA+E +LFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEG LKVVSKGEECIIK
Sbjct: 228 DSEETEAVELILFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGTLKVVSKGEECIIK 287

Query: 81  LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 140
           LEDK TGELYARAFLR GE HPVEPVIDSSRYFVLRIEENIGGRLRHAFIG+GFRER EA
Sbjct: 288 LEDKKTGELYARAFLRNGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGLGFRERPEA 347

Query: 141 YDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFF 200
           YDFQAALHDHMKYL+KKKTAEEMEQ +Q  S+VDYSLK+GETL L +KNKS   VKSKFF
Sbjct: 348 YDFQAALHDHMKYLNKKKTAEEMEQHYQKASSVDYSLKDGETLVLQIKNKSGHGVKSKFF 407

Query: 201 E-QGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDAS 259
           E Q +N+LSL++K N+KEP IC+KP PPPP PLSPA     SPSN    F+LEG+SKD +
Sbjct: 408 EQQSMNNLSLEEKTNQKEP-ICIKPPPPPPGPLSPAAKGPNSPSNWVPNFNLEGTSKDEA 466

Query: 260 PDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
            DS +E SKE  S E    +D PDDDFGDFQ AG
Sbjct: 467 QDSIRE-SKEPPSLEKQGPQDTPDDDFGDFQTAG 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143403|emb|CBI21964.3| unnamed protein product [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/274 (77%), Positives = 232/274 (84%), Gaps = 3/274 (1%)

Query: 21  ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
           ++EETEA+E +LFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEG LKVVSKGEECIIK
Sbjct: 16  DSEETEAVELILFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGTLKVVSKGEECIIK 75

Query: 81  LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 140
           LEDK TGELYARAFLR GE HPVEPVIDSSRYFVLRIEENIGGRLRHAFIG+GFRER EA
Sbjct: 76  LEDKKTGELYARAFLRNGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGLGFRERPEA 135

Query: 141 YDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFF 200
           YDFQAALHDHMKYL+KKKTAEEMEQ +Q  S+VDYSLK+GETL L +KNKS   VKSKFF
Sbjct: 136 YDFQAALHDHMKYLNKKKTAEEMEQHYQKASSVDYSLKDGETLVLQIKNKSGHGVKSKFF 195

Query: 201 E-QGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDAS 259
           E Q +N+LSL++K N+KEP IC+KP PPPP PLSPA     SPSN    F+LEG+SKD +
Sbjct: 196 EQQSMNNLSLEEKTNQKEP-ICIKPPPPPPGPLSPAAKGPNSPSNWVPNFNLEGTSKDEA 254

Query: 260 PDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
            DS +E SKE  S E    +D PDDDFGDFQ AG
Sbjct: 255 QDSIRE-SKEPPSLEKQGPQDTPDDDFGDFQTAG 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806921|ref|NP_001241579.1| uncharacterized protein LOC100813301 [Glycine max] gi|255648333|gb|ACU24618.1| unknown [Glycine max]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/274 (73%), Positives = 226/274 (82%), Gaps = 4/274 (1%)

Query: 21  ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
           E+E+ E IE VLFQV ECYVY+IPPR +AASYRADEW+VNKWAWEG+LKV SKGEECIIK
Sbjct: 16  ESEDAEPIELVLFQVPECYVYIIPPRMTAASYRADEWDVNKWAWEGILKVTSKGEECIIK 75

Query: 81  LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 140
           LEDKSTGELYARAFLR GE HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA
Sbjct: 76  LEDKSTGELYARAFLRNGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 135

Query: 141 YDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLK-NKSSGRVKSKF 199
           YDFQAALHDHMKYL+KKKTAEEMEQ +Q TS+VDYSLKEGETL L +K NKS   VKSKF
Sbjct: 136 YDFQAALHDHMKYLNKKKTAEEMEQHYQQTSSVDYSLKEGETLVLQIKTNKSGSSVKSKF 195

Query: 200 FEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDAS 259
           FE GLN  S ++K   KE +  +K L PPPAPLSP    + SP+NSP   SLE ++   +
Sbjct: 196 FELGLNK-SPEEKNGGKESIPSIK-LSPPPAPLSPVFGTQKSPTNSPTNLSLEKTNIVET 253

Query: 260 PDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
           P + K D++ + SPE  +TED+ DDDFGDFQAAG
Sbjct: 254 PKTVK-DTEPEDSPEKQSTEDVLDDDFGDFQAAG 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172180|gb|AEL98794.1| adaptin ear-binding coat-associated protein, partial [Silene latifolia]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 194/276 (70%), Positives = 222/276 (80%), Gaps = 19/276 (6%)

Query: 23  EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
           E+T+ IE +LFQV ECYVY+IPPRK+AASYRADEW+VNKWAWEG+LKVVSKGEECII+LE
Sbjct: 21  EDTDPIELILFQVPECYVYIIPPRKTAASYRADEWDVNKWAWEGVLKVVSKGEECIIRLE 80

Query: 83  DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
           DKSTGELYARAFLRKGE HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD
Sbjct: 81  DKSTGELYARAFLRKGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 140

Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQ 202
           FQAALHDHMKYLDKKKTAEEMEQQFQ++SAVDYSLK+GETL L LKNK+ G VK+K  EQ
Sbjct: 141 FQAALHDHMKYLDKKKTAEEMEQQFQNSSAVDYSLKDGETLVLQLKNKTGGNVKTKSIEQ 200

Query: 203 GLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAAR-MSPSNSPQKFSLEGSSKDASPD 261
           G++ +SL +K    EP++ +KP PPPP  LSP +     SP+ SP+K             
Sbjct: 201 GVSSISLSEKSKPNEPLLAIKPPPPPPPTLSPTSPRTPTSPNFSPEK------------- 247

Query: 262 STKEDSKEQHSPE-----SPNTEDIPDDDFGDFQAA 292
           S  ED +E   P      S ++E++ DDDFGDFQAA
Sbjct: 248 SVDEDREETQKPNSSAKESKSSEEVADDDFGDFQAA 283

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172178|gb|AEL98793.1| adaptin ear-binding coat-associated protein, partial [Silene latifolia]

 Score =  363 bits (931), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/276 (70%), Positives = 222/276 (80%), Gaps = 19/276 (6%)

Query: 23  EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
           E+T+ IE +LFQV ECYVY+IPPRK+AASYRADEW+VNKWAWEG+LKVVSKGEECIIKLE
Sbjct: 21  EDTDPIELILFQVPECYVYIIPPRKTAASYRADEWDVNKWAWEGVLKVVSKGEECIIKLE 80

Query: 83  DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
           DKSTGELYARAFLRKG+ HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD
Sbjct: 81  DKSTGELYARAFLRKGDPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 140

Query: 143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFFEQ 202
           FQAALHDHMKYLDKKKTAEEMEQQFQ++SAVDYSLK+GETL L LKNK+ G VK+K  EQ
Sbjct: 141 FQAALHDHMKYLDKKKTAEEMEQQFQNSSAVDYSLKDGETLVLQLKNKTGGNVKTKSIEQ 200

Query: 203 GLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAAR-MSPSNSPQKFSLEGSSKDASPD 261
           G++ +SL +K    EP++ +KP PPPP  LSP +     SP+ SP+K             
Sbjct: 201 GVSSISLSEKSKPNEPLLAIKPPPPPPPTLSPTSPRTPTSPNFSPEK------------- 247

Query: 262 STKEDSKEQHSPE-----SPNTEDIPDDDFGDFQAA 292
           S  ED +E   P      S ++E++ DDDFGDFQAA
Sbjct: 248 SVDEDREETQKPNSSAKESKSSEEVADDDFGDFQAA 283

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820692|ref|XP_002878229.1| hypothetical protein ARALYDRAFT_486311 [Arabidopsis lyrata subsp. lyrata] gi|297324067|gb|EFH54488.1| hypothetical protein ARALYDRAFT_486311 [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/276 (69%), Positives = 224/276 (81%), Gaps = 3/276 (1%)

Query: 21  ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
           +NEE EAIE VLFQV ECYVYLIPPRK+AASYRADEW+VNKWAWEG LKVVSKGEECIIK
Sbjct: 22  DNEEREAIEIVLFQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIK 81

Query: 81  LEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEA 140
           L DK+TGELYA+AFLR+GELHPVE VIDSSRYFVLR+EE I GR+RHAFIG+GFRERTEA
Sbjct: 82  LVDKTTGELYAQAFLREGELHPVEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEA 141

Query: 141 YDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSSGRVKSKFF 200
           YDFQAALHDHMKYL+KKKTAEEMEQ FQ+TS+VDYSLK+GET+ L LKN+S    KSK  
Sbjct: 142 YDFQAALHDHMKYLNKKKTAEEMEQHFQNTSSVDYSLKDGETIVLQLKNRSDKDSKSKTV 201

Query: 201 EQGLNDLSLDDKGNRKEPV-ICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDAS 259
           E+ L +LSL+DKG   E     + P PPPP PLSP T A+ SPSN P   SL+ SS+   
Sbjct: 202 EKSLGNLSLEDKGKSIETTIPSIIPPPPPPGPLSPVTTAQKSPSNLPPSISLQRSSEQQD 261

Query: 260 PDSTKEDSKEQHSPESPN--TEDIPDDDFGDFQAAG 293
            D+ +E+ +++   ++ +   ED PDDDFGDFQAAG
Sbjct: 262 LDTKREEEEKKEDLKANDGGVEDAPDDDFGDFQAAG 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2076461	302	AT3G58600 "AT3G58600" [Arabido	0.979	0.950	0.640	6.3e-92
DICTYBASE|DDB_G0281235	329	DDB_G0281235 "Adaptin ear-bind	0.546	0.486	0.419	7.3e-38
TAIR|locus:2024208	272	ABCI18 "AT1G03900" [Arabidopsi	0.569	0.613	0.448	7.4e-34
ZFIN|ZDB-GENE-050522-67	260	necap2 "NECAP endocytosis asso	0.569	0.642	0.419	1.5e-33
UNIPROTKB|Q8NC96	275	NECAP1 "Adaptin ear-binding co	0.569	0.607	0.410	2.6e-32
UNIPROTKB|Q3T093	275	NECAP1 "Adaptin ear-binding co	0.600	0.64	0.418	1.4e-30
UNIPROTKB|F1NN78	266	NECAP2 "Uncharacterized protei	0.546	0.601	0.436	2.3e-30
UNIPROTKB|F1SUS2	280	NECAP2 "Uncharacterized protei	0.556	0.582	0.427	2.3e-30
RGD|1306053	277	Necap1 "NECAP endocytosis asso	0.600	0.635	0.413	3.8e-30
RGD|735063	263	Necap2 "NECAP endocytosis asso	0.556	0.619	0.425	3.8e-30

TAIR|locus:2076461 AT3G58600 "AT3G58600" [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 189/295 (64%), Positives = 219/295 (74%)

Query:     4 EEEKKVREIEDQNDVESENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWA 63
             EE+KK     D  +V+ +NEE EAIE  LFQV ECYVYLIPPRK+AASYRADEW+VNKWA
Sbjct:    11 EEDKK--SSTDPVNVD-DNEEREAIEIALFQVPECYVYLIPPRKTAASYRADEWDVNKWA 67

Query:    64 WEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGG 123
             WEG LKVVSKGEECIIKL DK+TGELYA+AFLR+GELHPVE VIDSSRYFVLR+EE I G
Sbjct:    68 WEGALKVVSKGEECIIKLVDKTTGELYAQAFLREGELHPVEAVIDSSRYFVLRVEEKIDG 127

Query:   124 RLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETL 183
             R+RHAFIG+GFRERTEAYDFQAALHDHMKYL+KKKTAEEMEQ +Q+TS+VDYSLKEGET+
Sbjct:   128 RVRHAFIGLGFRERTEAYDFQAALHDHMKYLNKKKTAEEMEQHYQNTSSVDYSLKEGETI 187

Query:   184 HLHLKNKSSGRVKSKFFEQGLNDLSLDDKGNRKEPVI-CLKXXXXXXXXXXXXXXXRMSP 242
              L LKN+S    KSK  E+ L +LSL+DKG   E  I  +                + SP
Sbjct:   188 VLQLKNRSDKDSKSKTVEKSLGNLSLEDKGKSIETTIPSIILPPPPPGPLSPVTTAQKSP 247

Query:   243 SNSPQKFSLEGSSK----DASPDSTKEDSKEQHSPESPNTEDIPDDDFGDFQAAG 293
             S+ P   SL+ SS+    D   +  +E+ KE    +    ED PDDDFGDFQAAG
Sbjct:   248 SSLPPSLSLQRSSEQQDLDTKREEEEEEKKEDLKAKDGGVEDAPDDDFGDFQAAG 302

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006897 "endocytosis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0281235 DDB_G0281235 "Adaptin ear-binding coat-associated protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 378 (138.1 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 70/167 (41%), Positives = 108/167 (64%)

Query:    26 EAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKS 85
             E  E  L    EC++Y IPPR SA+ Y+A +W+ + + W G L +V++GE C+I+ ED +
Sbjct:     3 EDYEQTLLVKKECFIYRIPPRPSASGYKAQDWDPSSFIWTGRLVIVARGENCVIRFEDPN 62

Query:    86 TGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQA 145
              GE++A+      + + VEPV+DSSRYFV+RI++   G  RHAF+G+GF +R +A++F A
Sbjct:    63 NGEIFAQCPF---DQNSVEPVVDSSRYFVIRIKD---GE-RHAFVGMGFTDRDDAFEFNA 115

Query:   146 ALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKNKSS 192
              L DH  Y+  KK  E   + +++    DYSLK G+T+H+  K  +S
Sbjct:   116 TLQDHQNYIKNKKDIEIQRRNYENEPKKDYSLKTGQTIHIPFKAPTS 162

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

TAIR|locus:2024208 ABCI18 "AT1G03900" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 79/176 (44%), Positives = 109/176 (61%)

Query:    21 ENEETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIK 80
             E EE E  E  L  V E  VY IPPR ++  Y+  EW  +   W G L+VVS  + C I+
Sbjct:     5 EEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIR 64

Query:    81 LEDKSTGELYARAFLRKGEL-HPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTE 139
             LED ++G+L+A  F+  G   + VEP +DSSRYFVLRI++   GR ++AFIG+GF ER E
Sbjct:    65 LEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDD---GRGKYAFIGLGFAERNE 121

Query:   140 AYDFQAALHDHMKYLDKKKTAE-----EMEQQFQSTSAVDYSLKEGETLHLHLKNK 190
             A+DF  AL DH KY+ ++K  E     E +       AV++ LKEGET+ +++K K
Sbjct:   122 AFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPK 177

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006897 "endocytosis" evidence=IEA

GO:0006858 "extracellular transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

ZFIN|ZDB-GENE-050522-67 necap2 "NECAP endocytosis associated 2" [Danio rerio (taxid:7955)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 73/174 (41%), Positives = 112/174 (64%)

Query:    29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
             E VL   +E +VY IPPR S   YRA +W +++ AW G +K+++KG+   IKLED++TGE
Sbjct:    10 ESVLCVKAEVHVYRIPPRSSNRGYRAADWKLDEPAWSGRMKIIAKGKTAYIKLEDRNTGE 69

Query:    89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
             L+A+A + +     VE V+DSSRYFV+RIE+  G   RHAFIG+GF +R +++DF  AL 
Sbjct:    70 LFAQAAVEQYPSSVVEAVVDSSRYFVIRIEDGNG---RHAFIGLGFADRGDSFDFNVALQ 126

Query:   149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHL----KNKSSGRVKSK 198
             DH K++ ++      E    S   +D   KEG+T+ +++    K +S G ++S+
Sbjct:   127 DHFKWVKQESDLARQEAVQDSVPKLDLGFKEGQTIKINIGNMKKKESGGPLRSR 180

GO:0016020 "membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q8NC96 NECAP1 "Adaptin ear-binding coat-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 71/173 (41%), Positives = 104/173 (60%)

Query:    29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
             E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct:     8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGE 67

Query:    89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
             L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct:    68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124

Query:   149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHL---HLKNKSSGRVKSK 198
             DH K++ ++    +  Q+  +   +D   KEG+T+ L   ++ NK  G  K +
Sbjct:   125 DHFKWVKQESEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPR 177

GO:0015031 "protein transport" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q3T093 NECAP1 "Adaptin ear-binding coat-associated protein 1" [Bos taurus (taxid:9913)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 77/184 (41%), Positives = 107/184 (58%)

Query:    29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
             E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct:     8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGE 67

Query:    89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
             L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct:    68 LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFSDRGDAFDFNVSLQ 124

Query:   149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLN 205
             DH K++ ++    +  Q+  S   +D   KEG+T+ L + N   K  G  K K    G  
Sbjct:   125 DHFKWVKQESEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPK--TAGTG 182

Query:   206 DLSL 209
              LSL
Sbjct:   183 GLSL 186

GO:0005886 "plasma membrane" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1NN78 NECAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 72/165 (43%), Positives = 105/165 (63%)

Query:    26 EAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKS 85
             E  E VL      +VY +PPR S   YR+ EW +++ AW G L++ +KG+   IKLEDK+
Sbjct:     3 EDYEAVLCVKPAVHVYRVPPRASNRGYRSAEWQLDQPAWSGRLRITAKGKTAFIKLEDKT 62

Query:    86 TGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQA 145
             +GEL+A+A + +     VE V DSSRYFVLRIE+  G   R AFIG+GF +R +A+DF  
Sbjct:    63 SGELFAQAPVEQFPGIAVESVTDSSRYFVLRIEDGNG---RRAFIGVGFVDRGDAFDFNV 119

Query:   146 ALHDHMKYL-DKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 189
             AL DH K++  + + A++ E   Q+   +D   KEG+T+ L++ N
Sbjct:   120 ALQDHFKWVRQQNELAKQSENPDQAPK-LDLGFKEGQTIKLNIAN 163

GO:0006897 "endocytosis" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA

UNIPROTKB|F1SUS2 NECAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 71/166 (42%), Positives = 103/166 (62%)

Query:    24 ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLED 83
             E    E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLED
Sbjct:     3 EEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLED 62

Query:    84 KSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDF 143
             +++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+DF
Sbjct:    63 RTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFDF 119

Query:   144 QAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 189
               AL DH K++ ++    +  Q       +D S KEG+T+ L++ N
Sbjct:   120 NVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIAN 165

GO:0030125 "clathrin vesicle coat" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

RGD|1306053 Necap1 "NECAP endocytosis associated 1" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 76/184 (41%), Positives = 107/184 (58%)

Query:    29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
             E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct:     8 ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67

Query:    89 LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
             L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct:    68 LFAQAPVEQYPGIAVETVADSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124

Query:   149 DHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN---KSSGRVKSKFFEQGLN 205
             DH K++ ++    +  Q+  S   +D   KEG+T+ L + N   K  G  K +    G  
Sbjct:   125 DHFKWVKQETEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPR--ASGTG 182

Query:   206 DLSL 209
              LSL
Sbjct:   183 GLSL 186

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA;ISO

GO:0006897 "endocytosis" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=IEA;ISO

RGD|735063 Necap2 "NECAP endocytosis associated 2" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 71/167 (42%), Positives = 105/167 (62%)

Query:    23 EETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLE 82
             EE+E  E VL    E +VY IPPR +   YRA EW +++ +W G L++ +KG+   IKLE
Sbjct:     2 EESE-YESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLE 60

Query:    83 DKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYD 142
             D+++GEL+A+A + +     VE V DSSRYFV+RIE+  G   R AFIGIGF +R +A+D
Sbjct:    61 DRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNG---RRAFIGIGFGDRGDAFD 117

Query:   143 FQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 189
             F  AL DH K++ ++    +  Q       +D   KEG+T+ +++ N
Sbjct:   118 FNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKEGQTIKINIAN 164

GO:0005622 "intracellular" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R630	NECP1_PONAB	No assigned EC number	0.3520	0.8464	0.9018	yes	no
Q6P756	NECP2_RAT	No assigned EC number	0.3505	0.8122	0.9049	yes	no
Q8NC96	NECP1_HUMAN	No assigned EC number	0.3520	0.8464	0.9018	yes	no
Q9CR95	NECP1_MOUSE	No assigned EC number	0.3420	0.8395	0.8945	yes	no
Q5E9Q4	NECP2_BOVIN	No assigned EC number	0.3586	0.8054	0.8872	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIX2238 hypothetical protein (283 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
cd13228	120	cd13228, PHear_NECAP, NECAP (adaptin-ear-binding c	1e-67
pfam07933	158	pfam07933, DUF1681, Protein of unknown function (D	6e-59
cd00900	88	cd00900, PH-like, Pleckstrin homology-like domain	0.001

>gnl|CDD|241382 cd13228, PHear_NECAP, NECAP (adaptin-ear-binding coat-associated protein) Plextrin Homology (PH) fold with ear-like function (PHear) domain

 Score =  205 bits (525), Expect = 1e-67
 Identities = 70/122 (57%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 31  VLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELY 90
           VL    E YVY IPPR SA  YRA +W + K  W G L+VV+KGE+C I+LED +TGEL+
Sbjct: 2   VLLVKPEVYVYRIPPRASARGYRAADWGLEKPLWTGRLRVVAKGEKCEIRLEDPNTGELF 61

Query: 91  ARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDH 150
           A+  +       VEPV+DSSRYFVLR+E+  G   RHAFIGIGFRER++A+DF  AL DH
Sbjct: 62  AQCPVDVDPGTAVEPVVDSSRYFVLRVEDGSG---RHAFIGIGFRERSDAFDFNVALQDH 118

Query: 151 MK 152
            K
Sbjct: 119 FK 120

NECAPs are alpha-ear-binding proteins that enrich on clathrin-coated vesicles (CCVs). NECAP 1 is expressed in brain and non-neuronal tissues and cells while NECAP 2 is ubiquitously expressed. The PH-like domain of NECAPs is a protein-binding interface that mimics the FxDxF motif binding properties of the alpha-ear and is called PHear (PH fold with ear-like function) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|219649 pfam07933, DUF1681, Protein of unknown function (DUF1681)

 Score =  185 bits (471), Expect = 6e-59
 Identities = 74/163 (45%), Positives = 102/163 (62%), Gaps = 5/163 (3%)

Query: 27  AIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKST 86
            IE VLF   E +VY IPPR S+  YRA +W +++  W G L+VV KG+   I LED ST
Sbjct: 1   EIERVLFVKPEVHVYKIPPRSSSKGYRAADWKLDEPIWTGRLRVVEKGDRVSIVLEDPST 60

Query: 87  GELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAA 146
           GEL+A+A         VEPV+DSSRYFV+R++       R AFIGIGF +R++A+DF  A
Sbjct: 61  GELFAQAPYDSYNA--VEPVLDSSRYFVIRVQ---DPTGRKAFIGIGFEDRSDAFDFNVA 115

Query: 147 LHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLHLHLKN 189
           L DH K++  +    + ++   S   +D SLKEGET+ ++L  
Sbjct: 116 LQDHFKWVKNESEPSKQKESNDSEPKLDLSLKEGETITINLGG 158

This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function. Length = 158

>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 63  AWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIG 122
              G L + S      + L DK    L  +  +            DS R  VLR+++   
Sbjct: 15  RGRGTLFITSNR----LILRDKQDDRLKLKIPISDIVKVNPSRASDSDRALVLRLKD--- 67

Query: 123 GRLRHAFIGIGFRERTEAYDFQAA 146
              +   +G  F+ + EA   +AA
Sbjct: 68  ---KRESLGFSFKSKEEAVLIKAA 88

The PH-like family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG2500	253	consensus Uncharacterized conserved protein [Funct	100.0
PF07933	160	DUF1681: Protein of unknown function (DUF1681); In	100.0
cd00835	122	RanBD Ran-binding domain. Ran-binding domain; This	93.29
PF00638	122	Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is	85.89
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	81.36

>KOG2500 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-87  Score=608.57  Aligned_cols=249  Identities=44%  Similarity=0.722  Sum_probs=202.9

Q ss_pred             cccceeeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeCCeeEEEEeeCCcccceeeeeccCCCCCCe
Q 047538           24 ETEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPV  103 (293)
Q Consensus        24 ~~d~iE~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG~~~~IkLED~~TGeLFA~cP~~~~~~~aV  103 (293)
                      +.++||+||||+++||||+||||+|++||||+||++++|+||||||||++|+.|+|||||++||+|||+||++.+++++|
T Consensus         2 e~~~yE~vL~v~pev~VY~IPPr~t~~gyra~eW~l~~~~WtGrlrvvakg~~~~ikLeD~tsg~LfA~c~id~~~~~av   81 (253)
T KOG2500|consen    2 EEEAYESVLFVKPEVFVYKIPPRATSRGYRAGEWNLDKPAWTGRLRVVAKGERCEIKLEDKTSGELFAQCPIDEGPGNAV   81 (253)
T ss_pred             ccccceeEEEecccEEEEECCCcccCCCccccccccCCccccceeEEEEcCcEEEEEeccCCchhhhhhCcccCCCCccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEcccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhhhhhhHHHHHhhhcCCCCCCCcCCCCceE
Q 047538          104 EPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETL  183 (293)
Q Consensus       104 E~ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~~~k~aee~~~~~~~~p~~DySLKEGETI  183 (293)
                      |+|+||||||||||+|   |+||||||||||+||+||||||||||||+||+++++++++++++++..|++||+|||||||
T Consensus        82 Eav~DSSRYFViRv~d---gngr~AFiGlGF~eR~dafDfnvaLqDHfkyv~~~~e~ek~eq~~d~~pslDlgFKEGeTI  158 (253)
T KOG2500|consen   82 EAVSDSSRYFVIRVED---GNGRHAFIGLGFGERGDAFDFNVALQDHFKYVKRQKEAEKQEQHYDAGPSLDLGFKEGETI  158 (253)
T ss_pred             eeecccceEEEEEEeC---CCccEEEEeecccccccccchhhhHHHHHHHHHHHHHHHhhhcccCCCccccccccCCcEE
Confidence            9999999999999996   6679999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCC---CCCCCccccccccCCCCCCccccCCCCCCccccCCCCCCCCCCCcchhcCCCCCCCCCCCCCCCCCCCCCC
Q 047538          184 HLHLKN---KSSGRVKSKFFEQGLNDLSLDDKGNRKEPVICLKPLPPPPAPLSPATAARMSPSNSPQKFSLEGSSKDASP  260 (293)
Q Consensus       184 ~Ini~~---k~g~~~~s~~~~~g~~~~s~~~~~~~~~~~~~~~lpppp~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (293)
                      +|||+|   ++|.-..+++.... +.|++-.-  +. ...+..|||||  |..|+++.+.||++.|   ....++...+.
T Consensus       159 kinikn~tkk~g~~s~pr~~~gk-~gl~llPP--Pp-ggt~~ilPPP~--p~a~v~t~~~Spg~sp---~~~p~s~~sDl  229 (253)
T KOG2500|consen  159 KINIKNITKKKGAASWPRTGPGK-GGLGLLPP--PP-GGTSIILPPPP--PLAPVTTAQSSPGSSP---APQPSSALSDL  229 (253)
T ss_pred             EEEeeccccccccccccccCCCC-CcccccCC--CC-CCcccccCCCC--CCCccceeccCCCCCC---CCCCCcccccc
Confidence            999995   45655555543322 33333111  11 11355555554  7788888888888632   22222222233


Q ss_pred             CCCccCccCCCCCCCCCCCCCCCCCcccc
Q 047538          261 DSTKEDSKEQHSPESPNTEDIPDDDFGDF  289 (293)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (293)
                      ....+.+.     .++..|-.++|+|++|
T Consensus       230 w~d~~~As-----~s~~~q~~~~~nwvqF  253 (253)
T KOG2500|consen  230 WTDFEEAS-----GSKKSQTAPSDNWVQF  253 (253)
T ss_pred             cccccccc-----cccccccCCCCCcccC
Confidence            33332222     3445566889999998

>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex

Probab=100.00  E-value=1.1e-78  Score=526.40  Aligned_cols=158  Identities=56%  Similarity=0.939  Sum_probs=89.5

Q ss_pred             ceeeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeCCee--EEEEeeCCcccceeeeeccCCCCCCee
Q 047538           27 AIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEEC--IIKLEDKSTGELYARAFLRKGELHPVE  104 (293)
Q Consensus        27 ~iE~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG~~~--~IkLED~~TGeLFA~cP~~~~~~~aVE  104 (293)
                      +||+|||++++||||+|||++|++||||++|++++|||||||||+++|+.|  .|+|||++||+|||+|||+.+  .+||
T Consensus         1 ~ie~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~--~~VE   78 (160)
T PF07933_consen    1 AIERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDY--AAVE   78 (160)
T ss_dssp             --S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS----EE
T ss_pred             CeeEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCC--CceE
Confidence            599999999999999999999999999999999999999999999999999  999999999999999999975  7999


Q ss_pred             EcccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhhhhhhHHHHHhhhcCCCCCCCcCCCCceEE
Q 047538          105 PVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKKKTAEEMEQQFQSTSAVDYSLKEGETLH  184 (293)
Q Consensus       105 ~ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~~~k~aee~~~~~~~~p~~DySLKEGETI~  184 (293)
                      +|+||||||||||+|+ +|  |||||||||+||+||||||||||||+||++++++.+++..+.+..|++||||||||||+
T Consensus        79 ~v~DSSRYFvlRv~d~-~G--r~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~~~~~~~~~~~p~~D~sLKeGetI~  155 (160)
T PF07933_consen   79 PVIDSSRYFVLRVQDP-SG--RHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEAEEQSQAAESQPKKDYSLKEGETIK  155 (160)
T ss_dssp             E-TT--S-EEEEEEET-TT--EEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-----------------------------
T ss_pred             EeecccceEEEEEEcC-CC--cEEEEEEeeccccccccHHHHHHHHHHHhhchhhhhhhhcccCCCCccCCcCCCCCEEE
Confidence            9999999999999997 45  89999999999999999999999999999998887777666778899999999999999


Q ss_pred             EecCC
Q 047538          185 LHLKN  189 (293)
Q Consensus       185 Ini~~  189 (293)
                      |||++
T Consensus       156 ini~g  160 (160)
T PF07933_consen  156 INIGG  160 (160)
T ss_dssp             -----
T ss_pred             EecCC
Confidence            99974

This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.

>cd00835 RanBD Ran-binding domain

Probab=93.29  E-value=2.5  Score=34.68  Aligned_cols=110  Identities=18%  Similarity=0.255  Sum_probs=78.4

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeCC--eeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGE--ECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG~--~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||.++ |-+|+.=+-       ..+|..   -=.|-|+|....+  .+.|.+-...+|.|...+++..  ...+.+.
T Consensus        10 E~~if~~r-~KLy~~~~~-------~~~Wke---rG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~--~~~~~~~   76 (122)
T cd00835          10 EEVIFSVR-AKLYRFDDE-------TKEWKE---RGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVP--GMKLQPM   76 (122)
T ss_pred             cEEEEEEE-eEEEEEcCC-------CCCCee---ceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecC--CcEEeec
Confidence            55667665 666664211       457852   3389999988754  5667777778999999999984  3556777


Q ss_pred             ccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHH
Q 047538          107 IDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHM  151 (293)
Q Consensus       107 iDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~  151 (293)
                      --|.+++++-..|..++.+......|-|..=.+|=.|.-+++++.
T Consensus        77 ~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~  121 (122)
T cd00835          77 GNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAK  121 (122)
T ss_pred             CCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence            656778877777765433467888999988788888888888764

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.

>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm

Probab=85.89  E-value=17  Score=29.39  Aligned_cols=111  Identities=19%  Similarity=0.293  Sum_probs=74.7

Q ss_pred             eeeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeC--CeeEEEEeeCCcccceeeeeccCCCCCCeeE
Q 047538           28 IEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKG--EECIIKLEDKSTGELYARAFLRKGELHPVEP  105 (293)
Q Consensus        28 iE~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG--~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~  105 (293)
                      =|.+||..+ |-+|+.=.-.       ..|.   -.=+|.|||....  ..+.|.+-...+|.|...+++...  ..+.+
T Consensus         8 ~E~~l~~~r-~Kl~~~~~~~-------~~W~---erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~--m~~~~   74 (122)
T PF00638_consen    8 DEEILFEVR-AKLYRFDKED-------KEWK---ERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKG--MKLKP   74 (122)
T ss_dssp             SEEEEEEEE-EEEEEEETTT-------TEEE---EEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TT--C-EEE
T ss_pred             CcEEEEEEE-EEEEEEeCCC-------CCcc---ccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCC--ceecc
Confidence            366888877 8888873211       4663   2448999999875  467788887789999999998843  45777


Q ss_pred             cccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHH
Q 047538          106 VIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHM  151 (293)
Q Consensus       106 ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~  151 (293)
                      .-.|.+.++.-..|-.++.+....+=|=|..=.+|=.|.-+++++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~  120 (122)
T PF00638_consen   75 MKGSEKSLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAK  120 (122)
T ss_dssp             STTTTTEEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred             cccCCcEEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHh
Confidence            7777666555434433333467888888888777888888877764

Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=81.36  E-value=16  Score=29.51  Aligned_cols=92  Identities=15%  Similarity=0.233  Sum_probs=65.0

Q ss_pred             eEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEe--CCeeEEEEeeCCcccceeeeeccCCCCCCeeEcccccceeEE
Q 047538           38 CYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSK--GEECIIKLEDKSTGELYARAFLRKGELHPVEPVIDSSRYFVL  115 (293)
Q Consensus        38 V~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvek--G~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~ViDSSRYFVL  115 (293)
                      +.||..-|.+       ..|.... -..|.|.++..  +....|++.|..++.+-=.|.+..    -++---++.-|+.-
T Consensus         9 a~v~~~~~~~-------~~W~~~~-~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~----~~~y~~~~~~Fh~w   76 (104)
T cd00837           9 AQVYTADPST-------GKWVPAS-GGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYK----GLKYTQATPFFHQW   76 (104)
T ss_pred             EEEEEECCCC-------CceEECC-CCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecC----CcEEeecCCeEEEE
Confidence            6677775543       2575322 36799999974  445779999988777766666654    25556677777777


Q ss_pred             EEEeCCCCceeeEEEeeeeccCcccchhHHHHhH
Q 047538          116 RIEENIGGRLRHAFIGIGFRERTEAYDFQAALHD  149 (293)
Q Consensus       116 RV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD  149 (293)
                      +..        ...+||.|.+-.||-.|.-++++
T Consensus        77 ~~~--------~~~~GL~F~se~eA~~F~~~v~~  102 (104)
T cd00837          77 EDD--------NCVYGLNFASEEEAAQFRKKVLE  102 (104)
T ss_pred             EcC--------CcEEEEeeCCHHHHHHHHHHHHh
Confidence            655        24799999999999999877654

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
1tqz_A	133	Solution Structure Of Necap1 Protein Length = 133		1e-26

>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein Length = 133

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 29  EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGE 88
           E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +GE
Sbjct: 8   ESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGE 67
Query: 89  LYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALH 148
           L+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L 
Sbjct: 68  LFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSLQ 124
Query: 149 DHMKYL 154
           DH K++
Sbjct: 125 DHFKWV 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	9e-58

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11 Length = 133

 Score =  180 bits (459), Expect = 9e-58
 Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 3/130 (2%)

Query: 28  IEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTG 87
            E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK +G
Sbjct: 7   YESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSG 66

Query: 88  ELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAAL 147
           EL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  +L
Sbjct: 67  ELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNVSL 123

Query: 148 HDHMKYLDKK 157
            DH K++ ++
Sbjct: 124 QDHFKWVKQE 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
1tqz_A	133	Necap1; endocytosis, structural genomics, endocyto	100.0
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	94.73
1qc6_A	130	EVH1 domain from ENA/VAsp-like protein; AN incompl	94.54
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	91.79
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	90.2
3m1i_B	191	RAN-specific GTPase-activating protein 1; heat rep	80.05

>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11

Probab=100.00  E-value=5.9e-70  Score=459.12  Aligned_cols=130  Identities=45%  Similarity=0.773  Sum_probs=124.6

Q ss_pred             ccceeeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeCCeeEEEEeeCCcccceeeeeccCCCCCCee
Q 047538           25 TEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVE  104 (293)
Q Consensus        25 ~d~iE~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG~~~~IkLED~~TGeLFA~cP~~~~~~~aVE  104 (293)
                      +++||+|||++++||||+|||++|++||||+||++++|||||||||+++|+.|.|+|||++||+|||+|||+.+++++||
T Consensus         4 ~~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE   83 (133)
T 1tqz_A            4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVE   83 (133)
T ss_dssp             SCCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEE
T ss_pred             ccceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCcccCCCCcceE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             EcccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhhhh
Q 047538          105 PVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKK  157 (293)
Q Consensus       105 ~ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~~~  157 (293)
                      +|+||||||||||+|+   +||||||||||+||+||||||||||||+|||+++
T Consensus        84 ~v~DSSRYFVlRv~d~---~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~~~~~  133 (133)
T 1tqz_A           84 TVTDSSRYFVIRIQDG---TGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE  133 (133)
T ss_dssp             ECTTCCSCEEEEEEET---TTEEEEEEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             EeecCcCeEEEEEECC---CCcEEEEeeeecccccccchHHHHHHHHHHHhcC
Confidence            9999999999999984   3489999999999999999999999999999863

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*

Probab=94.73  E-value=0.39  Score=42.56  Aligned_cols=118  Identities=15%  Similarity=0.289  Sum_probs=86.7

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEe--CCeeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSK--GEECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvek--G~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||.++ |-+|+.-+-..     ...|.-   -=+|.|||...  ...+.|.+--..+|.|.+.++|..  ...+.+.
T Consensus        45 Ee~lf~~R-aKLf~f~~d~~-----~~~WKE---RGvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~--~m~~~~~  113 (201)
T 1k5d_B           45 EEELFKMR-AKLFRFASEND-----LPEWKE---RGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITP--MMELKPN  113 (201)
T ss_dssp             CCCSEEEE-EEEEEECCTTS-----SCCEEE---EEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCS--SCCCCBC
T ss_pred             ceEEEEEe-eeEEEeccccc-----CCCccc---cceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecC--Cceeeec
Confidence            66778776 77888744322     235642   33899999975  245667777677899999999984  3456777


Q ss_pred             ccccceeEEEE-EeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhhhh
Q 047538          107 IDSSRYFVLRI-EENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKK  157 (293)
Q Consensus       107 iDSSRYFVLRV-~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~~~  157 (293)
                      .-|.|.||.-+ .|..+|...-..+-|=|..=.+|=.|..+++++.+.++..
T Consensus       114 ~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~~  165 (201)
T 1k5d_B          114 AGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEER  165 (201)
T ss_dssp             SSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHhh
Confidence            77889898876 7766665456778888988888999999999999887654

>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4

Probab=94.54  E-value=0.11  Score=42.51  Aligned_cols=105  Identities=13%  Similarity=0.207  Sum_probs=72.1

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeE-----EEEEEEeCCeeEEEEeeC--CcccceeeeeccCCCCC
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEG-----MLKVVSKGEECIIKLEDK--STGELYARAFLRKGELH  101 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTG-----RLRVvekG~~~~IkLED~--~TGeLFA~cP~~~~~~~  101 (293)
                      |.+|+..+ ++||.+=|.+.       .|.   +.-+|     ++.|......-.+||.|.  .++.+-..|.+..+   
T Consensus         3 E~~i~~~~-A~V~~~d~~~~-------~W~---~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~---   68 (130)
T 1qc6_A            3 EQSICQAR-ASVMVYDDTSK-------KWV---PIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKG---   68 (130)
T ss_dssp             CEEEEEEE-EEEEEEETTTT-------EEE---ECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTT---
T ss_pred             ceeEEEEE-EEEEEECCCCC-------cee---ECCCCceeeeEEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeCC---
Confidence            56666554 44555544321       385   34467     778888766778999986  57777778877643   


Q ss_pred             CeeEcccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhhh
Q 047538          102 PVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDK  156 (293)
Q Consensus       102 aVE~ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~~  156 (293)
                       .+-.-++.+|..-+..        ...+||.|.+-.||--|.-++++..+.+.+
T Consensus        69 -~~y~~~~~~Fh~w~~~--------~~~~GL~F~se~eA~~F~~~~~~al~~~~~  114 (130)
T 1qc6_A           69 -LKYNQATPTFHQWRDA--------RQVYGLNFASKEEATTFSNAMLFALNIMNS  114 (130)
T ss_dssp             -CEEEEEETTEEEEECS--------SCEEEEEESCHHHHHHHHHHHHHHHHHTC-
T ss_pred             -cEEeccCCeeEEEEcC--------CEEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence             3444488888887432        369999999999999999999888776654

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3

Probab=91.79  E-value=1.8  Score=35.34  Aligned_cols=111  Identities=15%  Similarity=0.224  Sum_probs=81.5

Q ss_pred             eeeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEe--CCeeEEEEeeCCcccceeeeeccCCCCCCeeE
Q 047538           28 IEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSK--GEECIIKLEDKSTGELYARAFLRKGELHPVEP  105 (293)
Q Consensus        28 iE~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvek--G~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~  105 (293)
                      =|.+||..+ |-+|+.=+-       ..+|..   -=+|.|||...  ...+.|.+-...+|.|.+.+++..+  ..+.+
T Consensus        20 ~E~~lf~~r-aKL~~~~~~-------~~~Wke---rG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~--m~~~~   86 (134)
T 1rrp_B           20 DEEEFFCNR-AKLFRFDVE-------SKEWKE---RGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPD--MKLTP   86 (134)
T ss_dssp             SEEEEEEEE-EEEEEECSS-------SSCEEE---EEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCSS--CCCBC
T ss_pred             CeEEEEEEE-EEEEEEccc-------CCCccc---CcEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecCC--ceEee
Confidence            356777766 677776321       235742   33899999874  3456677776679999999999853  55777


Q ss_pred             cccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHH
Q 047538          106 VIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHM  151 (293)
Q Consensus       106 ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~  151 (293)
                      ...|.|.|+.-..|..++.+....+.|=|..-.+|=.|..++.++.
T Consensus        87 ~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~  132 (134)
T 1rrp_B           87 NAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ  132 (134)
T ss_dssp             STTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHHh
Confidence            7788899998888765554567789999999889999998887764

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3

Probab=90.20  E-value=6.5  Score=31.91  Aligned_cols=113  Identities=14%  Similarity=0.258  Sum_probs=81.8

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeC--CeeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKG--EECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG--~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||.++ |-+|+.=.-       ..+|.   .-=+|.|||...-  ..+.|.+--..++.|.+.+++..  ...+.+.
T Consensus         7 E~~l~~~r-aKL~~~~~~-------~~~Wk---ERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~--~m~~~~~   73 (130)
T 1xke_A            7 EKVLYSQR-VKLFRFDAE-------VSQWK---ERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT--TMNLKPL   73 (130)
T ss_dssp             EEEEEEEE-EEEEEEETT-------TTEEE---EEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCT--TSCEEEC
T ss_pred             eEEEEEEE-EEEEEEcCC-------CCCcc---cCcEEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCC--CcEEeec
Confidence            56777766 556655221       13564   2337999999753  45666676667899999999984  3567777


Q ss_pred             ccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhh
Q 047538          107 IDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYL  154 (293)
Q Consensus       107 iDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l  154 (293)
                      .-|-|-|+....|..+|.+.-....|=|..=.+|=.|..++.++.+.+
T Consensus        74 ~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~  121 (130)
T 1xke_A           74 SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL  121 (130)
T ss_dssp             TTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence            777888888777766554567888999998889999999999887654

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}

Probab=80.05  E-value=26  Score=30.85  Aligned_cols=113  Identities=19%  Similarity=0.271  Sum_probs=79.4

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeC--CeeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKG--EECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG--~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||.++ |-+|+.=.-       ...|.-   -=+|-|||....  ..+.|.+--..+|.|.+..+|..  ...+.+.
T Consensus        73 Ee~lf~~R-aKLf~f~~~-------~~~WKE---RGvG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~--~m~~~~~  139 (191)
T 3m1i_B           73 EEVLYKVR-AKLFRFDAD-------AKEWKE---RGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAP--EYTLKPN  139 (191)
T ss_dssp             EEEEEEEE-EEEEEEETT-------TTEEEE---EEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCT--TCCCBCC
T ss_pred             eeeeeEEe-eEEEEEecC-------CCCccc---eeEEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCC--CcEEeEC
Confidence            56777765 777776321       134641   237889998863  34666666667899999999884  3457777


Q ss_pred             ccccceeEEEE-EeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhh
Q 047538          107 IDSSRYFVLRI-EENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYL  154 (293)
Q Consensus       107 iDSSRYFVLRV-~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l  154 (293)
                      .-|-|.||.-+ .|-..|...--.+-|=|..=..|=.|.-++.++++.+
T Consensus       140 ~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~n  188 (191)
T 3m1i_B          140 VGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEIN  188 (191)
T ss_dssp             TTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence            66778888775 5655564345677888988888999999999887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1tqza1	133	b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [	8e-62

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  189 bits (483), Expect = 8e-62
 Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 3/132 (2%)

Query: 26  EAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKS 85
              E VL    +  VY IPPR S   YRA +W +++  W G L++ SKG+   IKLEDK 
Sbjct: 5   LEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKV 64

Query: 86  TGELYARAFLRKGELHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQA 145
           +GEL+A+A + +     VE V DSSRYFV+RI++  G   R AFIGIGF +R +A+DF  
Sbjct: 65  SGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTG---RSAFIGIGFTDRGDAFDFNV 121

Query: 146 ALHDHMKYLDKK 157
           +L DH K++ ++
Sbjct: 122 SLQDHFKWVKQE 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1tqza1	133	Necap1 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1rrpb_	134	Nuclear pore complex protein Nup358 {Human (Homo s	91.14
d1xkea1	118	Ran-binding protein 2 {Human (Homo sapiens) [TaxId	90.77
d1k5db_	146	Ran-binding protein 1, Ranbp1 {Human (Homo sapiens	88.2

>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Necap1 N-terminal domain-like
domain: Necap1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-70  Score=459.64  Aligned_cols=130  Identities=46%  Similarity=0.799  Sum_probs=125.0

Q ss_pred             ccceeeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeCCeeEEEEeeCCcccceeeeeccCCCCCCee
Q 047538           25 TEAIEFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGEECIIKLEDKSTGELYARAFLRKGELHPVE  104 (293)
Q Consensus        25 ~d~iE~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG~~~~IkLED~~TGeLFA~cP~~~~~~~aVE  104 (293)
                      +++||+|||++++||||+|||++|++||||+||++++|+|||||||+++|+.|.|+|||++||+|||+|||+.+++++||
T Consensus         4 e~~~E~vL~v~~ev~VYkIPP~~s~~GyrAadW~~~~~~wtgrlrv~~~g~~~~I~LeD~~tgeLFA~~P~~~~~~~aVE   83 (133)
T d1tqza1           4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVE   83 (133)
T ss_dssp             SCCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEE
T ss_pred             hhceeEEeEEcceEEEEecCCCCCcCcEecCcCCCCCcceEEEEEEEEeCCeEEEEEecCCCcceEEeCccCCCCCcceE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EcccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhhhh
Q 047538          105 PVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLDKK  157 (293)
Q Consensus       105 ~ViDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~~~  157 (293)
                      +|+||||||||||+|+ +|  |||||||||+||+||||||||||||+|||+++
T Consensus        84 ~v~DSSRYFvlRv~d~-~G--r~AfiGiGF~dR~dAFDFnvaLqDh~k~~k~~  133 (133)
T d1tqza1          84 TVTDSSRYFVIRIQDG-TG--RSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE  133 (133)
T ss_dssp             ECTTCCSCEEEEEEET-TT--EEEEEEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred             EeccCcceEEEEEECC-CC--cEEEEEeeecccCcccchhhHHHHHHHHHhcC
Confidence            9999999999999985 34  89999999999999999999999999999863

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=1.6  Score=33.30  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=80.5

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeC--CeeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKG--EECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG--~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||.++ |-+|+.=+-  +     ..|.   .-=.|.|+|....  ..+.|.+-...+|.+-+.+.+..  ...+++.
T Consensus        21 E~~if~~r-~KL~~~~~~--~-----~~Wk---erGvG~lkil~~~~t~~~RlvmR~d~~~kv~lN~~i~~--~~~~~~~   87 (134)
T d1rrpb_          21 EEEFFCNR-AKLFRFDVE--S-----KEWK---ERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP--DMKLTPN   87 (134)
T ss_dssp             EEEEEEEE-EEEEEECSS--S-----SCEE---EEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS--SCCCBCS
T ss_pred             cEEEEEEe-eEEEEEcCC--C-----Ccee---eeeEEEEEEEEcCCCCcEEEEEEEcCCCcEEEEEEECC--CcEEeec
Confidence            57788775 677776221  1     2474   2337999998863  45667777767899999999884  4568888


Q ss_pred             ccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHH
Q 047538          107 IDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHM  151 (293)
Q Consensus       107 iDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~  151 (293)
                      ..+.|.++....|..++.++--.+.|=|..=.+|=.|.-+++++.
T Consensus        88 ~~~~~~~~~~~~d~~~~~~k~~~~~lrfk~~e~a~~f~~~~~eak  132 (134)
T d1rrpb_          88 AGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQ  132 (134)
T ss_dssp             TTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             CCCceEEEEEeeccCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence            889998888888765555556778898988888888888887764

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=2.4  Score=31.62  Aligned_cols=114  Identities=14%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeCC--eeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKGE--ECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG~--~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||.++ |-+|+.=+-  +     .+|.   --=.|.|+|....+  .+.|.+-...+|.+-..+++..  ...+.+.
T Consensus         1 E~~lf~~r-aKLy~~~~~--~-----~~Wk---erG~G~lkilk~~~~~~~RlvmR~d~~~kv~lN~~i~~--~~~~~~~   67 (118)
T d1xkea1           1 EKVLYSQR-VKLFRFDAE--V-----SQWK---ERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT--TMNLKPL   67 (118)
T ss_dssp             EEEEEEEE-EEEEEEETT--T-----TEEE---EEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCT--TSCEEEC
T ss_pred             CccEEEEE-EEEEEEeCC--C-----CChh---HhceeEEEEEEeCCCCcEEEEEEECCCCcEEEEeEEcC--CCccccc
Confidence            56778766 667765221  1     2475   23379999988643  4666666667899999999884  3457888


Q ss_pred             ccccceeEEEEEeCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhh
Q 047538          107 IDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLD  155 (293)
Q Consensus       107 iDSSRYFVLRV~D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~  155 (293)
                      -.+.+.|+.-..|-.++.+.-....|=|.+-.+|=.|.-+++++.+.|+
T Consensus        68 ~~~~~~~~~~~~d~~~~~~~~~~~~lrfk~~e~a~~f~~~~~eak~~l~  116 (118)
T d1xkea1          68 SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLL  116 (118)
T ss_dssp             TTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence            8888888877776555555678889999999999999999999988764

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=4.6  Score=31.26  Aligned_cols=116  Identities=16%  Similarity=0.275  Sum_probs=82.5

Q ss_pred             eeEEEeecceEEEEcCCCCCCCccccCCCCCCCceeeEEEEEEEeC--CeeEEEEeeCCcccceeeeeccCCCCCCeeEc
Q 047538           29 EFVLFQVSECYVYLIPPRKSAASYRADEWNVNKWAWEGMLKVVSKG--EECIIKLEDKSTGELYARAFLRKGELHPVEPV  106 (293)
Q Consensus        29 E~VL~v~~eV~VYkIPPr~S~~GYrAadW~~~~piWTGRLRVvekG--~~~~IkLED~~TGeLFA~cP~~~~~~~aVE~V  106 (293)
                      |.+||..+ |-+|+.=+-.     ...+|.   -.=.|.|+|....  ..+.|.+-...+|.+.+.+++..  +..+.+.
T Consensus        24 E~~lf~~r-~Kl~~f~~~~-----~~~~Wk---erGvG~lkilk~k~t~~~RllmR~d~~~kv~lN~~i~~--~m~~~~~   92 (146)
T d1k5db_          24 EEELFKMR-AKLFRFASEN-----DLPEWK---ERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITP--MMELKPN   92 (146)
T ss_dssp             CCCSEEEE-EEEEEECCTT-----SSCCEE---EEEEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCS--SCCCCBC
T ss_pred             ceEEEEEe-eEEEEEcccC-----CCCCcc---ceeEEEEEEEEcCCCCeEEEEEEEcCCCcEEEEeEecC--Cceeccc
Confidence            45667665 7788763221     124675   2347999998754  35666777777899999999884  4567888


Q ss_pred             ccccceeEEEEE-eCCCCceeeEEEeeeeccCcccchhHHHHhHHHHhhh
Q 047538          107 IDSSRYFVLRIE-ENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLD  155 (293)
Q Consensus       107 iDSSRYFVLRV~-D~~~G~gR~AfIGiGF~ERsdAFDFnVALQD~~K~l~  155 (293)
                      .++++.++..+. |..++.+.--...|=|..=.+|=.|.-+|+++.+-++
T Consensus        93 ~~~~~~~~~~~~~d~~~~~~k~~~~~irfk~~e~a~~f~~~~~e~k~~~~  142 (146)
T d1k5db_          93 AGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIE  142 (146)
T ss_dssp             SSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceeEEEEecCCCccCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence            899998887664 4333444667788889888889999999998877654