Citrus Sinensis ID: 047549
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C7S5 | 1095 | Tyrosine-sulfated glycope | yes | no | 0.832 | 0.364 | 0.455 | 7e-98 | |
| Q9SHI3 | 729 | Receptor-like protein 2 O | no | no | 0.945 | 0.621 | 0.413 | 8e-94 | |
| Q9FN37 | 1036 | Phytosulfokine receptor 2 | no | no | 0.956 | 0.442 | 0.327 | 7e-57 | |
| Q9ZVR7 | 1008 | Phytosulfokine receptor 1 | no | no | 0.977 | 0.464 | 0.327 | 4e-56 | |
| Q8LPB4 | 1021 | Phytosulfokine receptor 1 | N/A | no | 0.912 | 0.428 | 0.324 | 2e-53 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.937 | 0.382 | 0.299 | 1e-35 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.784 | 0.385 | 0.299 | 2e-32 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.918 | 0.435 | 0.285 | 3e-32 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.791 | 0.302 | 0.308 | 2e-31 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.941 | 0.397 | 0.288 | 2e-31 |
| >sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 358 bits (918), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 193/424 (45%), Positives = 268/424 (63%), Gaps = 25/424 (5%)
Query: 77 HLCHLNLSHNHL-----SFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
+L N+S+N SF+ + P L+ LDFS+N F G L L S+L RAGF
Sbjct: 199 NLTSFNVSNNSFTGSIPSFMCTASPQLTKLDFSYNDFSG--DLSQELSRCSRLSVLRAGF 256
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NIG 175
+ LSG IP ++ LE + LPVN+LSG I NG+ LT L +IG
Sbjct: 257 NNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNHIEGEIPKDIG 316
Query: 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
KL+ L SL+LH N+L G +P L NCT L+ LNLR+N G LSA +FS +L +DLG
Sbjct: 317 KLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQSLSILDLG 376
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIG 295
NN+FTG FP T+ SC +TA+R +GNK+ QISP +L L S+S+ + ++N ++N+TGA+
Sbjct: 377 NNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNLTGALS 436
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLK 355
IL GCK L L++ K F+ E +P N+ + S F +L + GIG C + G+IP WL KL+
Sbjct: 437 ILQGCKKLSTLIMAKNFYDETVP-SNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLIKLQ 495
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415
+++V+DL N+ G IPGWLG +P+LFY+DLS N ++GE PKE L AL Q+A + +
Sbjct: 496 RVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQLRALMSQKAYDATE 555
Query: 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSL 475
N L+LP+FV NQQYN+L SLPP IY++ N L G+IP+E+G + LH+L+L
Sbjct: 556 RNYLELPVFVNPNNVT-TNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLG 614
Query: 476 NNFS 479
NNFS
Sbjct: 615 NNFS 618
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Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1 | Back alignment and function description |
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Score = 344 bits (883), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 202/488 (41%), Positives = 292/488 (59%), Gaps = 35/488 (7%)
Query: 15 IDQETLLSLNFNASNP--PLNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFT 72
+DQ +L+L++N+ N PL +F + + I+ ++ L LR S+Y
Sbjct: 138 LDQLMILNLSYNSFNGELPLEQAFGNESNRFFSIQT---LDLSSNLLEGEILRSSVY-LQ 193
Query: 73 GKLTHLCHLNLSHNHL-----SFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127
G + +L N+S+N SF+ S P LS LDFS+N F GH + LG +L
Sbjct: 194 GTI-NLISFNVSNNSFTGPIPSFMCRSSPQLSKLDFSYNDFSGH--ISQELGRCLRLTVL 250
Query: 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL--------------- 172
+AGF+ LSG IP ++ + LE + LP NQL+G I N + L L
Sbjct: 251 QAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIP 310
Query: 173 -NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 231
+IG L++L+SL+LH N+++G +P L NCT L+ LNLR+N G L+ FS L +L
Sbjct: 311 MDIGNLSSLRSLQLHINNINGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKV 370
Query: 232 IDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
+DLGNN+FTG+ P + SC LTAIR +GNK+ +ISP +L L S+S++ +++N L+NIT
Sbjct: 371 LDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNIT 430
Query: 292 GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWL 351
GA+ IL GC+ L L+L K F+ E +P + +S F L + G+G C ++G+IP WL
Sbjct: 431 GALSILQGCRKLSTLILAKNFYDETVPSKEDF-LSPDGFPKLRIFGVGACRLRGEIPAWL 489
Query: 352 GKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411
L K++V+DL N+ G IPGWLG +P+LFY+DLS N ++GE PKE L AL Q+
Sbjct: 490 INLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLDLSDNLLTGELPKELFQLRALMSQKI- 548
Query: 412 NRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVL 471
+ N L+LP+F+ NQQYNKL+S PP IY+R N L GSIP+E+G + LH+L
Sbjct: 549 --TENNYLELPIFLNPNNVT-TNQQYNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHIL 605
Query: 472 DLSLNNFS 479
+L NN S
Sbjct: 606 ELLGNNLS 613
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1 | Back alignment and function description |
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Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 189/577 (32%), Positives = 272/577 (47%), Gaps = 119/577 (20%)
Query: 6 ASLDQACNQIDQETLLSLNFNASNPPL--NWSFSTDCCLWEGIKC---DSEAQVTHLWLP 60
+S+ Q C+ D L L N + +W + CC W+G+ C D +VT L LP
Sbjct: 13 SSVSQPCHPNDLSALRELAGALKNKSVTESWLNGSRCCEWDGVFCEGSDVSGRVTKLVLP 72
Query: 61 DRGLRGSIYPFTGKLT------------------------HLCHLNLSHNHLSFLSPSV- 95
++GL G I G+LT L L+LSHN LS V
Sbjct: 73 EKGLEGVISKSLGELTELRVLDLSRNQLKGEVPAEISKLEQLQVLDLSHNLLSGSVLGVV 132
Query: 96 --------------------------PFLSILDFSHNYFRG--HCQLPS----------- 116
P L +L+ S+N F G H +L S
Sbjct: 133 SGLKLIQSLNISSNSLSGKLSDVGVFPGLVMLNVSNNLFEGEIHPELCSSSGGIQVLDLS 192
Query: 117 ---------GLGNFSK-LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGV 166
GL N SK +Q + L+G +PD + + LE +SL N LSG +S +
Sbjct: 193 MNRLVGNLDGLYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNL 252
Query: 167 VNLTSLN----------------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLR 210
NL+ L G L L+ L + +N SG P L C+ L L+LR
Sbjct: 253 SNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLR 312
Query: 211 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPT 270
N+ G ++ NF+ +L +DL +N+F+G P +L C + + L+ N+ +I T
Sbjct: 313 NNSLSGSIN-LNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDT 371
Query: 271 ILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF 330
L S+ +LS++NN+ + + + +L C+NL L+L K F E IP N +T F
Sbjct: 372 FKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIP--NNVT----GF 425
Query: 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390
NL +L +GNC ++GQIP+WL KKL+VLDL N G IP W+G M +LFYID S N+
Sbjct: 426 DNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKMESLFYIDFSNNT 485
Query: 391 ISGEFPKEFCGLPALALQEAKN--RADGNQLQL------PLFVPETKCALYNQQYNKLFS 442
++G P +A+ E KN R +G Q+ PL+V K + YN++
Sbjct: 486 LTGAIP--------VAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSS-NGLPYNQVSR 536
Query: 443 LPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
PP+IYL NN LNG+I EIG + LH+LDLS NNF+
Sbjct: 537 FPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFT 573
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Phytosulfokine receptor with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4 | Back alignment and function description |
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Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 181/552 (32%), Positives = 255/552 (46%), Gaps = 84/552 (15%)
Query: 1 FLSRFASLDQACNQIDQETLLSLNFNASNPPLNW---SFSTDCCLWEGIKCDSE--AQVT 55
F S + C+ D E L + P W S STDCC W GI C+S +V
Sbjct: 20 FYSSESQTTSRCHPHDLEALRDFIAHLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVI 79
Query: 56 HLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP---------------------- 93
L L ++ L G + GKL + LNLS N + P
Sbjct: 80 RLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKDSIPLSIFNLKNLQTLDLSSNDLSGG 139
Query: 94 -----SVPFLSILDFSHNYFRGHCQLPSGL------------------GNFSK------- 123
++P L D S N F G LPS + GNF+
Sbjct: 140 IPTSINLPALQSFDLSSNKFNG--SLPSHICHNSTQIRVVKLAVNYFAGNFTSGFGKCVL 197
Query: 124 LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN---------- 173
L+ G + L+G+IP+D+ L + + N+LSG++S + NL+SL
Sbjct: 198 LEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLSGSLSREIRNLSSLVRLDVSWNLFS 257
Query: 174 ------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
+L LK TN G +P+ L N +L LNLR N+ G L N + +
Sbjct: 258 GEIPDVFDELPQLKFFLGQTNGFIGGIPKSLANSPSLNLLNLRNNSLSGRL-MLNCTAMI 316
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
L+++DLG N F G P L C L + L+ N Q+ + S+SY S++N++L
Sbjct: 317 ALNSLDLGTNRFNGRLPENLPDCKRLKNVNLARNTFHGQVPESFKNFESLSYFSLSNSSL 376
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347
+NI+ A+GIL CKNL L+L F EA+PD+ SS F+ L VL + NC + G +
Sbjct: 377 ANISSALGILQHCKNLTTLVLTLNFHGEALPDD-----SSLHFEKLKVLVVANCRLTGSM 431
Query: 348 PTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407
P WL +LQ+LDL N++TG IP W+G+ LFY+DLS NS +GE PK L +L
Sbjct: 432 PRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNNSFTGEIPKSLTKLESLTS 491
Query: 408 QEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMF 467
+ + P F+ + A QYN++F PP I L +N L+G I E GN+
Sbjct: 492 RNIS--VNEPSPDFPFFMKRNESA-RALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKK 548
Query: 468 LHVLDLSLNNFS 479
LHV DL N S
Sbjct: 549 LHVFDLKWNALS 560
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Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1 | Back alignment and function description |
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Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 169/521 (32%), Positives = 249/521 (47%), Gaps = 84/521 (16%)
Query: 35 SFSTDCCLWEGIKCDS-----------EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNL 83
SFS++CC W GI C S +V L L R L G + KL L LNL
Sbjct: 58 SFSSNCCDWVGISCKSSVSLGLDDVNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNL 117
Query: 84 SHNHLS-FLSPSVPFLS---ILDFSHNYFRG---------------------HCQLPSGL 118
+HN LS ++ S+ LS +LD S N F G H +P+ L
Sbjct: 118 THNSLSGSIAASLLNLSNLEVLDLSSNDFSGLFPSLINLPSLRVLNVYENSFHGLIPASL 177
Query: 119 -GNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNI--- 174
N +++ +Y GSIP + +S+E + L N LSG+I + L++L++
Sbjct: 178 CNNLPRIREIDLAMNYFDGSIPVGIGNCSSVEYLGLASNNLSGSIPQELFQLSNLSVLAL 237
Query: 175 -------------GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSA- 220
GKL+NL L + +N SG +P + L + + N F G++
Sbjct: 238 QNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSNLFNGEMPRS 297
Query: 221 ----------------------YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRL 258
N S + NL ++DL +N+F+GS P L +C+ L I
Sbjct: 298 LSNSRSISLLSLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINF 357
Query: 259 SGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP 318
+ K QI + S++ LS +N+++ NI+ A+ IL C+NL+ L+L F E +P
Sbjct: 358 AKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELP 417
Query: 319 DENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM 378
++ S F+NL VL I +C+++G +P WL LQ+LDL NQ++G IP WLG++
Sbjct: 418 -----SVPSLQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSL 472
Query: 379 PNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYN 438
+LFY+DLS N+ GE P L +L +E N + P F + A QYN
Sbjct: 473 NSLFYLDLSNNTFIGEIPHSLTSLQSLVSKE--NAVEEPSPDFPFFKKKNTNA-GGLQYN 529
Query: 439 KLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ S PP I L N LNGSI E G++ LHVL+L NN S
Sbjct: 530 QPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLS 570
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Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis. Daucus carota (taxid: 4039) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
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Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 225/498 (45%), Gaps = 49/498 (9%)
Query: 18 ETLLSLNFNASNPPL----NWSF--STDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPF 71
E L S SN PL +W+ S C W GI CDS V + L ++ L G + P
Sbjct: 32 EALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGHVVSVSLLEKQLEGVLSPA 91
Query: 72 TGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127
LT+L L+L+ N + P+ + L+ L NYF G +PSG+ +
Sbjct: 92 IANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSG--SIPSGIWELKNIFYL 149
Query: 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL--------------- 172
+ LSG +P+++ +SL I N L+G I + +L L
Sbjct: 150 DLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIP 209
Query: 173 -NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 231
+IG LANL L L N L+G +P+ N NL +L L N GD+ A +L
Sbjct: 210 VSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPA-EIGNCSSLVQ 268
Query: 232 IDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN-I 290
++L +N TG P L + + L A+R+ NK+ I ++ L +++L ++ N+L I
Sbjct: 269 LELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPI 328
Query: 291 TGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTW 350
+ IG L ++L +L L F P S +NL VL +G I G++P
Sbjct: 329 SEEIGFL---ESLEVLTLHSNNFTGEFPQ------SITNLRNLTVLTVGFNNISGELPAD 379
Query: 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410
LG L L+ L N +TGPIP + N L +DLS+N ++GE P+ F + +
Sbjct: 380 LGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIG 439
Query: 411 KNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAI---------YLRNNGLNGSIPIE 461
+N G ++ +F L N +L P I + N L G IP E
Sbjct: 440 RNHFTG-EIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPRE 498
Query: 462 IGNVMFLHVLDLSLNNFS 479
IGN+ L++L L N F+
Sbjct: 499 IGNLKDLNILYLHSNGFT 516
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 199/464 (42%), Gaps = 88/464 (18%)
Query: 33 NW--SFSTDCCLWEGIKCDSEA-QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS 89
+W S S+D C+W G+ C++ V L L D L G I P G L L ++L N LS
Sbjct: 46 DWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLS 105
Query: 90 FLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLE 149
Q+P +G+ S LQ F+ LSG IP +S LE
Sbjct: 106 ----------------------GQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLE 143
Query: 150 DISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209
+ L NQL G I + + ++ NLK L L N LSG +P+ + L L L
Sbjct: 144 QLILKNNQLIGPIPS--------TLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGL 195
Query: 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISP 269
R NN G++S + L L D+ NN+ TGS P T+ +C + LS N++ +I P
Sbjct: 196 RGNNLVGNISP-DLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEI-P 253
Query: 270 TILALVSVSYLSINNNNLS-NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSY 328
+ + V+ LS+ N LS I IG++
Sbjct: 254 FDIGFLQVATLSLQGNQLSGKIPSVIGLM------------------------------- 282
Query: 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSY 388
Q L VL + + G IP LG L + L L SN++TG IP LGNM L Y++L+
Sbjct: 283 --QALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELND 340
Query: 389 NSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYN-------------- 434
N ++G P E L L N N L+ P+ + C N
Sbjct: 341 NHLTGHIPPELGKLTDLFDLNVAN----NDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIP 396
Query: 435 QQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478
+ + KL S+ + L +N + G IP+E+ + L LDLS N
Sbjct: 397 RAFQKLESM-TYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKI 439
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 142/498 (28%), Positives = 228/498 (45%), Gaps = 58/498 (11%)
Query: 13 NQIDQETLLSLNFNASNPPL----NWSFSTDCCLWEGIKCDSE-AQVTHLWLPDRGLRGS 67
++ D++ LL S +W+ S C W+G+ C + +VTHL L L G
Sbjct: 22 DETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGV 81
Query: 68 IYPFTGKLTHLCHLNLSHNHLSFLSPSVP-------FLSILDFSHNYFRGHCQLPSGLGN 120
I P G L+ L L+L N F ++P L LD NY RG +P GL N
Sbjct: 82 ISPSIGNLSFLVSLDLYEN---FFGGTIPQEVGQLSRLEYLDMGINYLRG--PIPLGLYN 136
Query: 121 FSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL-------- 172
S+L R + L GS+P ++ + +L ++L N + G + + NLT L
Sbjct: 137 CSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHN 196
Query: 173 --------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFS 224
++ +L + SL+L N+ SG P L N ++L L + N+F G L
Sbjct: 197 NLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGI 256
Query: 225 TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINN 284
L NL + ++G N FTGS P TL++ L + ++ N + I PT + ++ L ++
Sbjct: 257 LLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSI-PTFGNVPNLKLLFLHT 315
Query: 285 NNLSNITGA----IGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGN 340
N+L + + + L C L L + + +P I+I++ + + LV L +G
Sbjct: 316 NSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLP----ISIANLSAK-LVTLDLGG 370
Query: 341 CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 400
I G IP +G L LQ L L N ++GP+P LG + NL Y+ L N +SG P
Sbjct: 371 TLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIG 430
Query: 401 GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPI 460
+ L + N +G + +P + L +++ +N LNG+IP+
Sbjct: 431 NMTMLETLDLSN--NGFEGIVPTSLGNCSHLL-------------ELWIGDNKLNGTIPL 475
Query: 461 EIGNVMFLHVLDLSLNNF 478
EI + L LD+S N+
Sbjct: 476 EIMKIQQLLRLDMSGNSL 493
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 200/447 (44%), Gaps = 68/447 (15%)
Query: 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP-SVPFLSILDFSHNYF-R 109
++T+L+L + L G++ LT+L L HN+L P + FL L+ + Y R
Sbjct: 385 VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENR 444
Query: 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNL 169
++P +GN ++LQ + LSG IP + L + L N+L G I + N
Sbjct: 445 FSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNC 504
Query: 170 TSLNIGKLAN----------------LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN 213
+ + LA+ L+ ++ NSL G LP L+N NL +N N
Sbjct: 505 HQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNK 564
Query: 214 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA 273
F G +S S+ + + D+ N F G PL L L +RL N+ +I T
Sbjct: 565 FNGSISPLCGSSSY--LSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGK 622
Query: 274 LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333
+ +S L I+ N+LS G I + +G LCK H
Sbjct: 623 ISELSLLDISRNSLS---GIIPVELG--------LCKKLTH------------------- 652
Query: 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393
+ + N + G IPTWLGKL L L L SN+ G +P + ++ N+ + L NS++G
Sbjct: 653 --IDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNG 710
Query: 394 EFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNG 453
P+E L AL A N + NQL PL P T L +KLF L L N
Sbjct: 711 SIPQEIGNLQAL---NALNLEE-NQLSGPL--PSTIGKL-----SKLFEL----RLSRNA 755
Query: 454 LNGSIPIEIGNVMFLH-VLDLSLNNFS 479
L G IP+EIG + L LDLS NNF+
Sbjct: 756 LTGEIPVEIGQLQDLQSALDLSYNNFT 782
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 153/531 (28%), Positives = 229/531 (43%), Gaps = 80/531 (15%)
Query: 1 FLSRFASL----DQACNQIDQETLLSLNFNASNPPL-NWSFSTDC--CLWEGIKCDSEAQ 53
FL +A L D++ +ID T LN + L +W ST C W G+ C + +
Sbjct: 11 FLVIYAPLVSYADESQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGC-TNHR 69
Query: 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS-----VPFLSILDFSHNYF 108
VT + LP L G I L L L+L N + P+ LS+ +N
Sbjct: 70 VTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVF-LQYNSL 128
Query: 109 RGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV- 167
G +LP + N + L+ F + LSG IP V +SL+ + + N SG I +G+
Sbjct: 129 SG--KLPPAMRNLTSLEVFNVAGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLAN 184
Query: 168 ------------NLTSLNIGKLANLKSLK---LHTNSLSGFLPQFLMNCTNLITLNLRIN 212
LT L NL+SL+ L N L G LP + NC++L+ L+ N
Sbjct: 185 LTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASEN 244
Query: 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL 272
G + A + L L + L NNNF+G+ P +L LT ++L N + + P
Sbjct: 245 EIGGVIPAA-YGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETT 303
Query: 273 A--LVSVSYLSINNNNLSNITGAIGI----LMGCKNLRMLLLCKIFFHEAIPD------- 319
A + L + N I+G + ++ KNL + +F E PD
Sbjct: 304 ANCRTGLQVLDLQENR---ISGRFPLWLTNILSLKNLDVS--GNLFSGEIPPDIGNLKRL 358
Query: 320 ----------ENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
+I + +L VL +KGQIP +LG +K L+VL LG N +G
Sbjct: 359 EELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSG 418
Query: 370 PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA-LQEAKNRADGNQLQLPLFVPET 428
+P + N+ L ++L N+++G FP E L +L+ L + NR G VP +
Sbjct: 419 YVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGA-------VPVS 471
Query: 429 KCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
L N + + L NG +G IP +GN+ L LDLS N S
Sbjct: 472 ISNLSNLSF---------LNLSGNGFSGEIPASVGNLFKLTALDLSKQNMS 513
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| 359482434 | 1280 | PREDICTED: tyrosine-sulfated glycopeptid | 0.830 | 0.310 | 0.540 | 1e-115 | |
| 219718185 | 1085 | receptor kinase [Gossypium barbadense] | 0.983 | 0.434 | 0.450 | 1e-112 | |
| 255537393 | 1087 | Leucine-rich repeat receptor protein kin | 0.828 | 0.365 | 0.531 | 1e-106 | |
| 224138536 | 1092 | predicted protein [Populus trichocarpa] | 0.830 | 0.364 | 0.531 | 1e-105 | |
| 224074123 | 1050 | predicted protein [Populus trichocarpa] | 0.841 | 0.383 | 0.518 | 1e-104 | |
| 358248614 | 1065 | tyrosine-sulfated glycopeptide receptor | 0.822 | 0.369 | 0.510 | 1e-103 | |
| 356520190 | 1103 | PREDICTED: tyrosine-sulfated glycopeptid | 0.822 | 0.357 | 0.504 | 1e-101 | |
| 297841971 | 1096 | hypothetical protein ARALYDRAFT_476358 [ | 0.979 | 0.427 | 0.426 | 1e-100 | |
| 449436222 | 1095 | PREDICTED: tyrosine-sulfated glycopeptid | 0.795 | 0.347 | 0.487 | 3e-96 | |
| 15218425 | 1095 | Tyrosine-sulfated glycopeptide receptor | 0.832 | 0.364 | 0.455 | 5e-96 |
| >gi|359482434|ref|XP_002270860.2| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/424 (54%), Positives = 296/424 (69%), Gaps = 26/424 (6%)
Query: 77 HLCHLNLSHNHLSFLSPS-----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
+L + N+S+N + PS P + ++DFS+N F G ++P GLG+ SKL+ RAGF
Sbjct: 394 NLTNFNVSNNSFTDSIPSDICRNSPLVRLMDFSYNKFSG--RVPLGLGDCSKLEVLRAGF 451
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NIG 175
+ LSG IP+D+ +AA+L +ISLPVN LSG IS+ +VNL++L ++G
Sbjct: 452 NSLSGLIPEDIYSAAALREISLPVNSLSGPISDAIVNLSNLTVLELYSNQLIGNLPKDMG 511
Query: 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
KL LK L LH N L+G LP LMNCT L TLNLR+N F GD+S FSTL L T+DLG
Sbjct: 512 KLFYLKRLLLHINKLTGPLPASLMNCTKLTTLNLRVNLFEGDISVIKFSTLQELSTLDLG 571
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIG 295
+NNFTG+ P++L SC LTA+RL+ N++E QI P ILAL S+S+LSI+ NNL+NITGAI
Sbjct: 572 DNNFTGNLPVSLYSCKSLTAVRLANNRLEGQILPDILALQSLSFLSISKNNLTNITGAIR 631
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLK 355
+LMGC+NL ++L + FF+E +PD++ I + S FQ L VLG+G C GQ+PTWL KL
Sbjct: 632 MLMGCRNLSTVILTQNFFNERLPDDDSI-LDSNGFQRLQVLGLGGCRFTGQVPTWLAKLS 690
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415
KL+VLDL NQITG IPGWLG +P+LFYIDLS N ISGEFPKE LP L +EA D
Sbjct: 691 KLEVLDLSLNQITGSIPGWLGTLPSLFYIDLSSNLISGEFPKEIIRLPRLTSEEAATEVD 750
Query: 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSL 475
+ L+LP+FV N QY +L +LPPAIYLRNN L+G+IP EIG + F+H+LDLS
Sbjct: 751 QSYLELPVFVMPNNAT--NLQYKQLSNLPPAIYLRNNSLSGNIPTEIGQLKFIHILDLSY 808
Query: 476 NNFS 479
NNFS
Sbjct: 809 NNFS 812
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219718185|gb|ACL35341.1| receptor kinase [Gossypium barbadense] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 261/579 (45%), Positives = 333/579 (57%), Gaps = 108/579 (18%)
Query: 5 FASLDQA-CNQIDQETLLSLNFNASNP---PLNWSFSTDCCLWEGIKCD--SEAQVTHLW 58
FAS QA C+Q D+ LL+ + N + P PLNW+ +TDCC WEG+ CD +V+ LW
Sbjct: 39 FASPSQAACDQNDRVFLLAFHSNITAPSSSPLNWTTTTDCCFWEGVGCDGPDSGRVSRLW 98
Query: 59 LPDRGLRG-----------------SIYPFTG--------KLTHLCHLNLSHN------H 87
LP RGL G S FTG L HL L+LS+N
Sbjct: 99 LPSRGLTGHLSTSLLNLTLLTHLNFSHNRFTGFLPSGFFSSLNHLQVLDLSYNSLYGELS 158
Query: 88 LSFLSP---SVPFLSILDFSHNYFRGHC-----------------------QLPSGLGNF 121
L F+S S+ + LD S N+F G Q+PS +
Sbjct: 159 LDFISDYNNSLSPIQTLDLSSNHFSGTIRSNSVLQAVNLTIFNVSNNTLTGQVPSWICIN 218
Query: 122 SKLQTFRAGFSYLSGSIPD------------------------DVSAAASLEDISLPVNQ 157
+ L ++ L G IP D+ + +SLE +SLP+N
Sbjct: 219 TSLTILDLSYNKLDGKIPTGLDKCSKLQIFRAGFNNLSGTLPADIYSVSSLEQLSLPLNH 278
Query: 158 LSGAISNGVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMNC 201
SG I + +V L L +IG+L+ L+ L LH N+ +G+LP LM+C
Sbjct: 279 FSGGIRDAIVQLDKLTILELFSNEFEGPIPKDIGQLSKLEQLLLHINNFTGYLPPSLMSC 338
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
TNL+TLNLR+N+ GDLSA+NFSTL L+T+DL NNNFTG+ PL+L SC LTA+RL+ N
Sbjct: 339 TNLVTLNLRVNHLEGDLSAFNFSTLQRLNTLDLSNNNFTGTLPLSLYSCKSLTAVRLASN 398
Query: 262 KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP-DE 320
++E QISP ILAL S+S+LSI+ N L+NITGAI IL KNL L+L K F +EAIP DE
Sbjct: 399 QLEGQISPAILALRSLSFLSISTNKLTNITGAIRILKEVKNLTTLILTKNFMNEAIPNDE 458
Query: 321 NQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPN 380
N I FQNL +L +G C GQ+P WL KLK L+VLDL N+I+G IP WLG++ N
Sbjct: 459 N---IIGEGFQNLQILALGGCNFTGQVPRWLAKLKNLEVLDLSQNRISGLIPSWLGSLSN 515
Query: 381 LFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKL 440
LFYIDLS N ISGEFPKE L ALA QE+ N+ D + L+LP+FV A Q YN+L
Sbjct: 516 LFYIDLSANLISGEFPKELTSLWALATQESNNQVDRSYLELPVFVMPNN-ATSQQLYNQL 574
Query: 441 FSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
SLPPAIYLRNN L+G+IP IG + FLHVLDLS N+FS
Sbjct: 575 SSLPPAIYLRNNNLSGNIPEAIGQLRFLHVLDLSQNDFS 613
|
Source: Gossypium barbadense Species: Gossypium barbadense Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537393|ref|XP_002509763.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis] gi|223549662|gb|EEF51150.1| Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/425 (53%), Positives = 287/425 (67%), Gaps = 28/425 (6%)
Query: 77 HLCHLNLSHNHLSFLSPS----VPF--LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
+L N+S+N + PS V F +SILDFS+N F G +P G+G S L+ F AG
Sbjct: 201 NLSSFNVSNNSFTGQIPSNICTVSFSSMSILDFSYNDFSG--SIPFGIGKCSNLRIFSAG 258
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NI 174
F+ LSG+IPDD+ A LE +SLP+N LSG IS+ +VNL +L +I
Sbjct: 259 FNNLSGTIPDDIYKAVLLEQLSLPLNYLSGTISDSLVNLNNLRIFDLYSNNLTGLIPKDI 318
Query: 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
GKL+ L+ L+LH N+L+G LP LMNCT L+TLNLR+N G+L A++FS L L +DL
Sbjct: 319 GKLSKLEQLQLHINNLTGTLPASLMNCTKLVTLNLRVNLLEGELEAFDFSKLLQLSILDL 378
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
GNNNF G+ P L +C L A+RL+ N++ QI P I AL S+S+LS+++NNL+N+TGAI
Sbjct: 379 GNNNFKGNLPTKLYACKSLKAVRLAYNQLGGQILPEIQALESLSFLSVSSNNLTNLTGAI 438
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
I+MGCKNL L+L F +E IPD I S FQNL VL +G + GQ+PTWL KL
Sbjct: 439 QIMMGCKNLTTLILSVNFMNETIPDGG--IIDSNGFQNLQVLALGASGLSGQVPTWLAKL 496
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414
K L+VLDL N+ITG IP WLGN+P+LFY+DLS N +SGEFPKE GLP LA Q AK
Sbjct: 497 KNLEVLDLSLNRITGLIPSWLGNLPSLFYVDLSRNFLSGEFPKELAGLPTLAFQGAKELI 556
Query: 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLS 474
D + L LP+F + A Y QQYN+L +LPPAIYL NN L+G IPIEIG + FLHVLDLS
Sbjct: 557 DRSYLPLPVFA-QPNNATY-QQYNQLSNLPPAIYLGNNHLSGDIPIEIGQLKFLHVLDLS 614
Query: 475 LNNFS 479
NNFS
Sbjct: 615 NNNFS 619
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138536|ref|XP_002326627.1| predicted protein [Populus trichocarpa] gi|222833949|gb|EEE72426.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/425 (53%), Positives = 284/425 (66%), Gaps = 27/425 (6%)
Query: 77 HLCHLNLSHNHLSFLSPS------VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
+L LN+S+N + PS ++LDFS+N F G+ L G G SKL+ FRAG
Sbjct: 205 NLTRLNVSNNSFAGQIPSNICNISSGSTTLLDFSNNDFSGN--LTPGFGECSKLEIFRAG 262
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NI 174
F+ LSG IPDD+ A SL SLPVNQLSG IS+ VVNLTSL +I
Sbjct: 263 FNNLSGMIPDDLYKATSLVHFSLPVNQLSGQISDAVVNLTSLRVLELYSNQLGGRIPRDI 322
Query: 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
GKL+ L+ L LH NSL+G LP LMNCTNL+ LN+R+N G+LS +FSTL NL T+DL
Sbjct: 323 GKLSKLEQLLLHINSLTGPLPPSLMNCTNLVKLNMRVNFLAGNLSDSDFSTLRNLSTLDL 382
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
GNN FTG+FP +L SC L A+RL+ N+IE QI P ILAL S+S+LSI+ NNL+NITGAI
Sbjct: 383 GNNKFTGTFPTSLYSCTSLVAVRLASNQIEGQILPDILALRSLSFLSISANNLTNITGAI 442
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
ILMGCK+L L+L E I D+ T+ S FQNL VL +G C++ GQ+P+WL +
Sbjct: 443 RILMGCKSLSTLILSNNTMSEGILDDGN-TLDSTGFQNLQVLALGRCKLSGQVPSWLANI 501
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414
LQV+DL NQI G IPGWL N+ +LFY+DLS N +SGEFP + GL L QE +
Sbjct: 502 SSLQVIDLSYNQIRGSIPGWLDNLSSLFYLDLSNNLLSGEFPLKLTGLRTLTSQEVIKQL 561
Query: 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLS 474
D + L+LP+FV T N QYN+L +LPPAIYL NN L+G+IP++IG + FLHVLDLS
Sbjct: 562 DRSYLELPVFVMPTNAT--NLQYNQLSNLPPAIYLGNNNLSGNIPVQIGQLNFLHVLDLS 619
Query: 475 LNNFS 479
N FS
Sbjct: 620 DNRFS 624
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074123|ref|XP_002304261.1| predicted protein [Populus trichocarpa] gi|222841693|gb|EEE79240.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 228/440 (51%), Positives = 288/440 (65%), Gaps = 37/440 (8%)
Query: 71 FTGKLTH----------LCHLNLSHNHLSFLSPS-----VPF-LSILDFSHNYFRGHCQL 114
F G+L+H L LN+S+N + PS P +++LDFS N F G+ L
Sbjct: 147 FDGELSHSNSFLRAAWNLTRLNVSNNSFTGQIPSNVCQISPVSITLLDFSSNDFSGN--L 204
Query: 115 PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL-- 172
LG SKL+ FRAGF+ LSG IPDD+ A SL SLPVN LSG +S+ VVNLT+L
Sbjct: 205 TPELGECSKLEIFRAGFNNLSGMIPDDLYKATSLVHFSLPVNYLSGPVSDAVVNLTNLKV 264
Query: 173 --------------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDL 218
+IGKL+ L+ L LH NSL+G LP LMNCT+L+ LNLR+N G+L
Sbjct: 265 LELYSNKFSGRIPRDIGKLSKLEQLLLHINSLAGPLPPSLMNCTHLVKLNLRVNFLAGNL 324
Query: 219 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278
S +FSTL L T+DLGNNNF G FP +L SC L A+RL+ N+IE QISP I AL S+S
Sbjct: 325 SDLDFSTLPKLTTLDLGNNNFAGIFPTSLYSCTSLVAVRLASNQIEGQISPDITALKSLS 384
Query: 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGI 338
+LSI+ NNL+NITGAI ILMGCK+L L+L E I D+ T+ S FQNL VL +
Sbjct: 385 FLSISANNLTNITGAIRILMGCKSLTALILSNNTMSEGILDDGN-TLDSTGFQNLQVLAL 443
Query: 339 GNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKE 398
G C++ GQ+P+WL + LQV+DL NQI G IP WLG++ +LFY+DLS N +SG FP E
Sbjct: 444 GRCKLSGQVPSWLASITSLQVIDLSYNQIRGSIPRWLGDLSSLFYLDLSNNLLSGGFPLE 503
Query: 399 FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSI 458
GL AL QEA R + + L+LP+FV T N QYN+L SLPPAIYL+NN L+G+I
Sbjct: 504 LAGLRALTSQEAVKRVERSYLELPVFVKPTNAT--NLQYNQLSSLPPAIYLKNNNLSGNI 561
Query: 459 PIEIGNVMFLHVLDLSLNNF 478
P++IG + FLHVLDLS N F
Sbjct: 562 PVQIGQLKFLHVLDLSDNRF 581
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248614|ref|NP_001239911.1| tyrosine-sulfated glycopeptide receptor 1-like precursor [Glycine max] gi|223452476|gb|ACM89565.1| leucine-rich repeat receptor-like kinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 217/425 (51%), Positives = 277/425 (65%), Gaps = 31/425 (7%)
Query: 81 LNLSHNHLSFLSPSVPF----------LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
LN+S+N L+ P+ F L LD+S N F G Q GLG SKL+ FRAG
Sbjct: 177 LNVSNNSLTGHIPTSLFCINDHNNSSSLRFLDYSSNEFDGAIQ--PGLGACSKLEKFRAG 234
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NI 174
F++LSG IP D+ A SL +ISLP+N+L+G I +G+V L++L +I
Sbjct: 235 FNFLSGPIPSDLFHAVSLTEISLPLNRLTGTIGDGIVGLSNLTVLELYSNHFTGSIPHDI 294
Query: 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
G+L+ L+ L LH N+L+G +PQ LMNC NL+ LNLR+N G+LSA+NFS L T+DL
Sbjct: 295 GELSKLERLLLHVNNLTGTMPQSLMNCVNLVVLNLRVNVLEGNLSAFNFSGFLRLTTLDL 354
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
GNN+FTG P TL +C L+A+RL+ NK+E +ISP IL L S+S+LSI+ N L N+TGA+
Sbjct: 355 GNNHFTGVLPPTLYACKSLSAVRLASNKLEGEISPKILELESLSFLSISTNKLRNVTGAL 414
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
IL G KNL L+L K FF+E IP + I I FQ L VLG G C GQIP WL KL
Sbjct: 415 RILRGLKNLSTLMLSKNFFNEMIPQDVNI-IEPDGFQKLQVLGFGGCNFTGQIPGWLAKL 473
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414
KKL+VLDL NQI+GPIP WLG + LFY+DLS N ++G FP E LPALA Q+A ++
Sbjct: 474 KKLEVLDLSFNQISGPIPPWLGKLSQLFYMDLSVNLLTGVFPVELTELPALASQQANDKV 533
Query: 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLS 474
+ +LP+F +L QYN+L LPPAIYL +N LNGSIPIEIG + LH LDL
Sbjct: 534 ERTYFELPVFANANNVSLL--QYNQLSGLPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLK 591
Query: 475 LNNFS 479
NNFS
Sbjct: 592 KNNFS 596
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520190|ref|XP_003528747.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 214/424 (50%), Positives = 276/424 (65%), Gaps = 30/424 (7%)
Query: 81 LNLSHNHLSFLSPSVPF---------LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
LN+S+N L+ P+ F L LD+S N F G Q GLG SKL+ F+AGF
Sbjct: 216 LNVSNNSLTGHIPTSLFCVNDHNSSSLRFLDYSSNEFDGAIQ--PGLGACSKLEKFKAGF 273
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NIG 175
++LSG IP D+ A SL +ISLP+N+L+G I++G+V LT+L +IG
Sbjct: 274 NFLSGPIPSDLFDAVSLTEISLPLNRLTGTIADGIVGLTNLTVLELYSNHFTGSIPHDIG 333
Query: 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
+L+ L+ L LH N+L+G +P L+NC NL+ LNLR+N G+LSA+NFS L T+DLG
Sbjct: 334 ELSKLERLLLHVNNLTGTMPPSLINCVNLVVLNLRVNLLEGNLSAFNFSRFLGLTTLDLG 393
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIG 295
NN+FTG P TL +C L+A+RL+ NK+E +ISP IL L S+S+LSI+ N L N+TGA+
Sbjct: 394 NNHFTGVLPPTLYACKSLSAVRLASNKLEGEISPKILELESLSFLSISTNKLRNVTGALR 453
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLK 355
IL G KNL L+L FF+E IP + I I FQ L VLG G C GQIP WL KLK
Sbjct: 454 ILRGLKNLSTLMLSMNFFNEMIPQDVNI-IEPDGFQKLQVLGFGGCNFTGQIPGWLVKLK 512
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415
KL+ LDL NQI+GPIP WLG +P LFY+DLS N ++G FP E LPALA Q+A ++ +
Sbjct: 513 KLEALDLSFNQISGPIPLWLGTLPQLFYMDLSVNLLTGVFPVELTELPALASQQANDKVE 572
Query: 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSL 475
+LP+F +L QYN+L LPPAIYL +N LNGSIPIEIG + LH LDL
Sbjct: 573 RTYFELPVFANANNVSLL--QYNQLSGLPPAIYLGSNHLNGSIPIEIGKLKVLHQLDLKK 630
Query: 476 NNFS 479
NNFS
Sbjct: 631 NNFS 634
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841971|ref|XP_002888867.1| hypothetical protein ARALYDRAFT_476358 [Arabidopsis lyrata subsp. lyrata] gi|297334708|gb|EFH65126.1| hypothetical protein ARALYDRAFT_476358 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 219/513 (42%), Positives = 306/513 (59%), Gaps = 44/513 (8%)
Query: 2 LSRFASLDQACNQI------------DQETLLSLNFNA--SNPPLNWSFSTDCCLWEGIK 47
L R + LD + N++ DQ +L L++N+ PL SF GI
Sbjct: 115 LRRLSRLDLSHNRLSGPLPPDFLSALDQLLVLDLSYNSFKGELPLQQSFGNGS---NGIF 171
Query: 48 CDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHL-----SFLSPSVPFLSILD 102
++ L L GS+ F +L N+S+N SF+ + P L+ LD
Sbjct: 172 PIQTVDLSSNLLEGEILDGSV--FLEGAFNLTSFNVSNNSFTGPNPSFMCTTSPQLTKLD 229
Query: 103 FSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAI 162
FS+N F G +L LG S+L RAGF+ LSG IP ++ LE + LPVN+LSG I
Sbjct: 230 FSYNDFSG--ELSQELGRCSRLSVLRAGFNNLSGEIPKEIYKLPELEQLFLPVNRLSGKI 287
Query: 163 SNGVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLIT 206
+G+ LT L +IGKL+ L SL+LH N+L+GF+P L NCTNL+
Sbjct: 288 DDGITRLTKLTLLELYFNHLEGEIPNDIGKLSKLSSLQLHINNLTGFIPVSLANCTNLVK 347
Query: 207 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266
LNLR+N G+LSA +FS +L +DLGNN+FTG FP T+ SC +TA+R +GNK+ Q
Sbjct: 348 LNLRVNKLGGNLSAIDFSQFQSLSILDLGNNSFTGEFPSTVYSCKTMTAMRFAGNKLTGQ 407
Query: 267 ISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITIS 326
ISP +L L S+S+ + ++N ++N+TGA+ IL GCK L L++ K F+ E +P E +
Sbjct: 408 ISPQVLELESLSFFTFSDNQMTNLTGALRILQGCKKLSTLIMAKNFYDETVPSEIDF-LD 466
Query: 327 SYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDL 386
S F +L + GIG C +KG+IP WL KL++++V+DL N++ G IPGWLG +P+LFY+DL
Sbjct: 467 SDGFPSLQIFGIGACRLKGEIPAWLIKLQRVEVMDLSMNRLVGSIPGWLGTLPDLFYLDL 526
Query: 387 SYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA 446
S N ++GE PKE L AL Q+A + N L+LP+FV NQQYN+L SLPP
Sbjct: 527 SDNLLTGELPKELFQLRALMSQKAYYATERNYLELPVFVNPNNVT-TNQQYNQLSSLPPT 585
Query: 447 IYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
IY+R N L GSIP+E+G + LH+L+L NNFS
Sbjct: 586 IYIRRNNLTGSIPVEVGQLKVLHILELLSNNFS 618
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436222|ref|XP_004135892.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Cucumis sativus] gi|449491098|ref|XP_004158799.1| PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 196/402 (48%), Positives = 271/402 (67%), Gaps = 21/402 (5%)
Query: 94 SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISL 153
S+ + +LDFS+N F G +P GL L+ FRAGF+ L+G IP D+ +L+++SL
Sbjct: 230 SISSVRLLDFSNNGFGGG--IPQGLEKCHNLEVFRAGFNSLTGPIPSDLYNVLTLKELSL 287
Query: 154 PVNQLSGAISNGVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQF 197
VN SG I +G+VNLT+L +IGKL+NL+ L LH N+L+G LP
Sbjct: 288 HVNHFSGNIGDGIVNLTNLRILELFSNSLIGPIPTDIGKLSNLEQLSLHINNLTGSLPPS 347
Query: 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257
LMNCTNL LNLR+N +GDLS NFS L L T+DLGNN FTG+ P TL SC L A+R
Sbjct: 348 LMNCTNLTLLNLRVNKLQGDLSNVNFSRLVGLTTLDLGNNMFTGNIPSTLYSCKSLKAVR 407
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
L+ N++ +I+ I AL S+S++S++ NNL+N++GA+ LMGCKNL L++ + EA+
Sbjct: 408 LASNQLSGEITHEIAALQSLSFISVSKNNLTNLSGALRNLMGCKNLGTLVMSGSYVGEAL 467
Query: 318 PDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN 377
PDE+ I + + FQN+ L IG ++ G++P+W+ KL+ L+VLDL N++ G IP WLG+
Sbjct: 468 PDEDMI-VDANTFQNIQALAIGASQLTGKVPSWIQKLRSLEVLDLSFNRLVGSIPEWLGD 526
Query: 378 MPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY 437
P+LFYIDLS N ISG+FP + C L AL Q+ + A + L LP+FV + NQQY
Sbjct: 527 FPSLFYIDLSNNRISGKFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPSNAT--NQQY 584
Query: 438 NKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
N+L SLPPAIYL NN ++G IP+EIG + F+H+LDLS N+FS
Sbjct: 585 NQLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFS 626
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218425|ref|NP_177374.1| Tyrosine-sulfated glycopeptide receptor 1 [Arabidopsis thaliana] gi|75333482|sp|Q9C7S5.1|PSYR1_ARATH RecName: Full=Tyrosine-sulfated glycopeptide receptor 1 gi|12323670|gb|AAG51803.1|AC067754_19 leucine-rich receptor-like protein kinase, putative; 84911-81624 [Arabidopsis thaliana] gi|19423988|gb|AAL87278.1| putative leucine-rich receptor protein kinase [Arabidopsis thaliana] gi|22136976|gb|AAM91717.1| putative leucine-rich receptor protein kinase [Arabidopsis thaliana] gi|110738213|dbj|BAF01036.1| putative leucine-rich receptor-like protein kinase [Arabidopsis thaliana] gi|224589479|gb|ACN59273.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332197179|gb|AEE35300.1| Tyrosine-sulfated glycopeptide receptor 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 193/424 (45%), Positives = 268/424 (63%), Gaps = 25/424 (5%)
Query: 77 HLCHLNLSHNHL-----SFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
+L N+S+N SF+ + P L+ LDFS+N F G L L S+L RAGF
Sbjct: 199 NLTSFNVSNNSFTGSIPSFMCTASPQLTKLDFSYNDFSG--DLSQELSRCSRLSVLRAGF 256
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NIG 175
+ LSG IP ++ LE + LPVN+LSG I NG+ LT L +IG
Sbjct: 257 NNLSGEIPKEIYNLPELEQLFLPVNRLSGKIDNGITRLTKLTLLELYSNHIEGEIPKDIG 316
Query: 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
KL+ L SL+LH N+L G +P L NCT L+ LNLR+N G LSA +FS +L +DLG
Sbjct: 317 KLSKLSSLQLHVNNLMGSIPVSLANCTKLVKLNLRVNQLGGTLSAIDFSRFQSLSILDLG 376
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIG 295
NN+FTG FP T+ SC +TA+R +GNK+ QISP +L L S+S+ + ++N ++N+TGA+
Sbjct: 377 NNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESLSFFTFSDNKMTNLTGALS 436
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLK 355
IL GCK L L++ K F+ E +P N+ + S F +L + GIG C + G+IP WL KL+
Sbjct: 437 ILQGCKKLSTLIMAKNFYDETVP-SNKDFLRSDGFPSLQIFGIGACRLTGEIPAWLIKLQ 495
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415
+++V+DL N+ G IPGWLG +P+LFY+DLS N ++GE PKE L AL Q+A + +
Sbjct: 496 RVEVMDLSMNRFVGTIPGWLGTLPDLFYLDLSDNFLTGELPKELFQLRALMSQKAYDATE 555
Query: 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSL 475
N L+LP+FV NQQYN+L SLPP IY++ N L G+IP+E+G + LH+L+L
Sbjct: 556 RNYLELPVFVNPNNVT-TNQQYNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLG 614
Query: 476 NNFS 479
NNFS
Sbjct: 615 NNFS 618
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| TAIR|locus:2207056 | 1095 | PSY1R "PSY1 receptor" [Arabido | 0.780 | 0.341 | 0.439 | 1.5e-98 | |
| TAIR|locus:2020402 | 729 | RLP2 "AT1G17240" [Arabidopsis | 0.774 | 0.508 | 0.416 | 1.5e-91 | |
| TAIR|locus:2020382 | 756 | RLP3 "AT1G17250" [Arabidopsis | 0.780 | 0.494 | 0.441 | 2.9e-80 | |
| TAIR|locus:2154709 | 1036 | PSKR2 "phytosylfokine-alpha re | 0.766 | 0.354 | 0.336 | 5e-47 | |
| TAIR|locus:2051628 | 1008 | PSKR1 "phytosulfokin receptor | 0.757 | 0.360 | 0.338 | 1.2e-46 | |
| TAIR|locus:2154344 | 1135 | AT5G48940 [Arabidopsis thalian | 0.705 | 0.297 | 0.295 | 2.7e-28 | |
| TAIR|locus:2205005 | 1019 | RLP7 "AT1G47890" [Arabidopsis | 0.720 | 0.338 | 0.292 | 2.8e-27 | |
| TAIR|locus:2020457 | 1166 | BRL1 "BRI1 like" [Arabidopsis | 0.594 | 0.244 | 0.274 | 8.1e-26 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.736 | 0.309 | 0.295 | 2.3e-25 | |
| TAIR|locus:2129246 | 891 | RLP50 "receptor like protein 5 | 0.736 | 0.396 | 0.280 | 3.3e-25 |
| TAIR|locus:2207056 PSY1R "PSY1 receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 1.5e-98, Sum P(3) = 1.5e-98
Identities = 173/394 (43%), Positives = 234/394 (59%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA 161
DFS+N F G L L S+L RAGF+ LSG IP ++ LE + LPVN+LSG
Sbjct: 229 DFSYNDFSG--DLSQELSRCSRLSVLRAGFNNLSGEIPKEIYNLPELEQLFLPVNRLSGK 286
Query: 162 ISNGVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXX 205
I NG+ LT L +IGKL+ L SL+LH N+L G +P L
Sbjct: 287 IDNGITRLTKLTLLELYSNHIEGEIPKDIGKLSKLSSLQLHVNNLMGSIPVSLANCTKLV 346
Query: 206 XXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265
G LSA +FS +L +DLGNN+FTG FP T+ SC +TA+R +GNK+
Sbjct: 347 KLNLRVNQLGGTLSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTG 406
Query: 266 QISPTILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITI 325
QISP +L L S+S+ TGA+ IL GCK L L++ K F+ E +P N+ +
Sbjct: 407 QISPQVLELESLSFFTFSDNKMTNLTGALSILQGCKKLSTLIMAKNFYDETVPS-NKDFL 465
Query: 326 SSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYID 385
S F +L + GIG C + G+IP WL KL++++V+DL N+ G IPGWLG +P+LFY+D
Sbjct: 466 RSDGFPSLQIFGIGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTIPGWLGTLPDLFYLD 525
Query: 386 LSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP 445
LS N ++GE PKE L AL Q+A + + N L+LP+FV NQQYN+L SLPP
Sbjct: 526 LSDNFLTGELPKELFQLRALMSQKAYDATERNYLELPVFVNPNNVTT-NQQYNQLSSLPP 584
Query: 446 AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
IY++ N L G+IP+E+G + LH+L+L NNFS
Sbjct: 585 TIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFS 618
|
|
| TAIR|locus:2020402 RLP2 "AT1G17240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 164/394 (41%), Positives = 229/394 (58%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA 161
DFS+N F GH + LG +L +AGF+ LSG IP ++ + LE + LP NQL+G
Sbjct: 227 DFSYNDFSGH--ISQELGRCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQLTGK 284
Query: 162 ISNGVVNL---TSL-------------NIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXX 205
I N + L TSL +IG L++L+SL+LH N+++G +P L
Sbjct: 285 IDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCTKLV 344
Query: 206 XXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265
G L+ FS L +L +DLGNN+FTG+ P + SC LTAIR +GNK+
Sbjct: 345 KLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTG 404
Query: 266 QISPTILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITI 325
+ISP +L L S+S+ TGA+ IL GC+ L L+L K F+ E +P + +
Sbjct: 405 EISPQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKEDF-L 463
Query: 326 SSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYID 385
S F L + G+G C ++G+IP WL L K++V+DL N+ G IPGWLG +P+LFY+D
Sbjct: 464 SPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWLGTLPDLFYLD 523
Query: 386 LSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP 445
LS N ++GE PKE L AL Q+ + N L+LP+F+ NQQYNKL+S PP
Sbjct: 524 LSDNLLTGELPKELFQLRALMSQKI---TENNYLELPIFLNPNNVTT-NQQYNKLYSFPP 579
Query: 446 AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
IY+R N L GSIP+E+G + LH+L+L NN S
Sbjct: 580 TIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLS 613
|
|
| TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 174/394 (44%), Positives = 235/394 (59%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA 161
DFS+N F G+ +P GLG KL +AGF+ +SG IP D+ + LE + LPVN LSG
Sbjct: 233 DFSYNDFTGN--IPQGLGRCLKLSVLQAGFNNISGEIPSDIYNLSELEQLFLPVNHLSGK 290
Query: 162 ISNGVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXX 205
I++ + +LT L +IG+L+ L+SL+LH N+++G +P L
Sbjct: 291 INDDITHLTKLKSLELYSNHLGGEIPMDIGQLSRLQSLQLHINNITGTVPPSLANCTNLV 350
Query: 206 XXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265
G LS +FS +L +DLGNN+F+G FP + SC L+A+R + NK+
Sbjct: 351 KLNLRLNRLEGTLSELDFSRFQSLSILDLGNNSFSGDFPWRVHSCKSLSAMRFASNKLTG 410
Query: 266 QISPTILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITI 325
QISP +L L S+S TGA+GIL GC+NL LL+ K F++E P + + I
Sbjct: 411 QISPHVLELESLSILSLSDNKLMNITGALGILQGCRNLSTLLIGKNFYNETFPSDKDL-I 469
Query: 326 SSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYID 385
SS F NL + G ++G+IP WL KLK L V+DL NQ+ G IPGWLG P+LFYID
Sbjct: 470 SSDGFPNLQIFASGGSGLRGEIPAWLIKLKSLAVIDLSHNQLVGSIPGWLGTFPHLFYID 529
Query: 386 LSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP 445
LS N +SGE PK+ L AL Q+A + + N L+LP+FV + QQYN+LFSLPP
Sbjct: 530 LSENLLSGELPKDLFQLKALMSQKAYDATERNYLKLPVFVSPNNVTTH-QQYNQLFSLPP 588
Query: 446 AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
IY+R N L GSIPIE+G + LHVL+LS N S
Sbjct: 589 GIYIRRNNLKGSIPIEVGQLKVLHVLELSHNYLS 622
|
|
| TAIR|locus:2154709 PSKR2 "phytosylfokine-alpha receptor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 5.0e-47, P = 5.0e-47
Identities = 133/395 (33%), Positives = 191/395 (48%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSK-LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG 160
D S N G+ GL N SK +Q + L+G +PD + + LE +SL N LSG
Sbjct: 190 DLSMNRLVGNLD---GLYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSG 246
Query: 161 AISNGVVNLTSLN----------------IGKLANLKSLKLHTNSLSGFLPQFLMXXXXX 204
+S + NL+ L G L L+ L + +N SG P L
Sbjct: 247 ELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKL 306
Query: 205 XXXXXXXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIE 264
G ++ NF+ +L +DL +N+F+G P +L C + + L+ N+
Sbjct: 307 RVLDLRNNSLSGSINL-NFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFR 365
Query: 265 EQISPTILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT 324
+I T L S+ + + + +L C+NL L+L K F E IP N +T
Sbjct: 366 GKIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIP--NNVT 423
Query: 325 ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYI 384
F NL +L +GNC ++GQIP+WL KKL+VLDL N G IP W+G M +LFYI
Sbjct: 424 ----GFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPHWIGKMESLFYI 479
Query: 385 DLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP 444
D S N+++G P L L + +PL+V K + YN++ P
Sbjct: 480 DFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSS-NGLPYNQVSRFP 538
Query: 445 PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
P+IYL NN LNG+I EIG + LH+LDLS NNF+
Sbjct: 539 PSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFT 573
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| TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-46, P = 1.2e-46
Identities = 132/390 (33%), Positives = 189/390 (48%)
Query: 106 NYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNG 165
NYF G+ SG G L+ G + L+G+IP+D+ L + + N+LSG++S
Sbjct: 182 NYFAGN--FTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLSGSLSRE 239
Query: 166 VVNLTSL-------NI--GKLAN----LKSLKL---HTNSLSGFLPQFLMXXXXXXXXXX 209
+ NL+SL N+ G++ + L LK TN G +P+ L
Sbjct: 240 IRNLSSLVRLDVSWNLFSGEIPDVFDELPQLKFFLGQTNGFIGGIPKSLANSPSLNLLNL 299
Query: 210 XXXXFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISP 269
G L N + + L+++DLG N F G P L C L + L+ N Q+
Sbjct: 300 RNNSLSGRLML-NCTAMIALNSLDLGTNRFNGRLPENLPDCKRLKNVNLARNTFHGQVPE 358
Query: 270 TILALVSVSYXXXXXXXXXXXTGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA 329
+ S+SY + A+GIL CKNL L+L F EA+PD+ SS
Sbjct: 359 SFKNFESLSYFSLSNSSLANISSALGILQHCKNLTTLVLTLNFHGEALPDD-----SSLH 413
Query: 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
F+ L VL + NC + G +P WL +LQ+LDL N++TG IP W+G+ LFY+DLS N
Sbjct: 414 FEKLKVLVVANCRLTGSMPRWLSSSNELQLLDLSWNRLTGAIPSWIGDFKALFYLDLSNN 473
Query: 390 SISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYL 449
S +GE PK L +L + + P F+ + A QYN++F PP I L
Sbjct: 474 SFTGEIPKSLTKLESLTSRNIS--VNEPSPDFPFFMKRNESARA-LQYNQIFGFPPTIEL 530
Query: 450 RNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+N L+G I E GN+ LHV DL N S
Sbjct: 531 GHNNLSGPIWEEFGNLKKLHVFDLKWNALS 560
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| TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 114/386 (29%), Positives = 170/386 (44%)
Query: 114 LPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN 173
LP LG SKLQ+ + LSG IP ++ + L ++ L N LSG +
Sbjct: 243 LPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPK--------E 294
Query: 174 IGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTID 233
+GKL NL+ + L N+L G +P+ + F G + +F L NL +
Sbjct: 295 LGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPK-SFGNLSNLQELM 353
Query: 234 LGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYXXXXXXXXXXXTGA 293
L +NN TGS P L++C L ++ N+I I P I L ++ G
Sbjct: 354 LSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLE---GN 410
Query: 294 I-GILMGCKNLRMLLLCKIFFHEAIP-------DENQITISSYAFQNLVVLGIGNC---- 341
I L GC+NL+ L L + + ++P + ++ + S A ++ L IGNC
Sbjct: 411 IPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLV 470
Query: 342 -------EIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394
I G+IP +G L+ L LDL N ++GP+P + N L ++LS N++ G
Sbjct: 471 RLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGY 530
Query: 395 FPKEFCGLPAL-ALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNG 453
P L L L + N G +P++ L SL I L N
Sbjct: 531 LPLSLSSLTKLQVLDVSSNDLTGK-------IPDS--------LGHLISLNRLI-LSKNS 574
Query: 454 LNGSIPIEIGNVMFLHVLDLSLNNFS 479
NG IP +G+ L +LDLS NN S
Sbjct: 575 FNGEIPSSLGHCTNLQLLDLSSNNIS 600
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| TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 111/380 (29%), Positives = 158/380 (41%)
Query: 114 LPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN 173
+P + + L + SY SG IP + + L +SL N L G I + +
Sbjct: 315 IPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPS--------S 366
Query: 174 IGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYNFSTLHNLHTID 233
IG L L + + N LSG LP L F G L + S L L
Sbjct: 367 IGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPP-SISQLSKLKFFF 425
Query: 234 LGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS-PTILALVSV-SYXXXXXXXXXXXT 291
+N F G+ L LT I LS N++ + + I L ++ ++
Sbjct: 426 ADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRP 485
Query: 292 GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWL 351
+ + K L L + +I I N IT S + NL L + +C I P ++
Sbjct: 486 LDLNVFSSLKQLGTLYISRI----PISTTN-IT-SDFP-SNLEYLSLRSCNIT-DFPEFI 537
Query: 352 GKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411
K + LQ+LDL +N+I G +P WL MP L +DLS NS+SG F P L
Sbjct: 538 RKGRNLQILDLSNNKIKGQVPDWLWRMPTLNSVDLSNNSLSG-FHVSVKASPESQLTSVD 596
Query: 412 NRADGNQLQLPLFVPETKCALYNQQYNKLFS--LPPAIY---------LRNNGLNGSIPI 460
N Q PLF+P +K Y N F+ +P +I L NN LNGS+P
Sbjct: 597 --LSSNAFQGPLFLP-SKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPW 653
Query: 461 EIGNVMF-LHVLDLSLNNFS 479
+ +M L LDL N+ S
Sbjct: 654 CLETLMSSLSDLDLRNNSLS 673
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| TAIR|locus:2020457 BRL1 "BRI1 like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 8.1e-26, Sum P(3) = 8.1e-26
Identities = 85/310 (27%), Positives = 144/310 (46%)
Query: 104 SHNYFRGHCQLPSGLGNFSK-LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAI 162
+HN G ++P L K L + SG +P +A L++++L N LSG
Sbjct: 285 AHNRLSG--EIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDF 342
Query: 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGDLSAYN 222
N VV+ K+ + L + N++SG +P L F G++ +
Sbjct: 343 LNTVVS-------KITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPS-G 394
Query: 223 FSTLHN---LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279
F +L + L I + NN +G+ P+ L C L I LS N++ I I L ++S
Sbjct: 395 FCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLS- 453
Query: 280 XXXXXXXXXXXTGAI--GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337
TG I G+ + NL L+L +IP+ +IS N++ +
Sbjct: 454 --DLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE----SISRCT--NMIWIS 505
Query: 338 IGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397
+ + + G+IP+ +G L KL +L LG+N ++G +P LGN +L ++DL+ N+++G+ P
Sbjct: 506 LSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPG 565
Query: 398 EFCGLPALAL 407
E L +
Sbjct: 566 ELASQAGLVM 575
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| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 117/396 (29%), Positives = 168/396 (42%)
Query: 114 LPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN 173
LPS LG KL+T + +SG IP D+ + L D+ L N LSG+I + LT L
Sbjct: 242 LPSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLE 301
Query: 174 ----------------IGKLANLKSLKLHTNSLSGFLPQFLMXXXXXXXXXXXXXXFRGD 217
IG +NLK + L N LSG +P + F G
Sbjct: 302 QLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS 361
Query: 218 LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277
+ S +L + L N +G P L + LT N++E I P L
Sbjct: 362 IPT-TISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPP---GLADC 417
Query: 278 SYXXXXXXXXXXXTGAI--GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335
+ TG I G+ M +NL LLL IP E I + + +LV
Sbjct: 418 TDLQALDLSRNSLTGTIPSGLFM-LRNLTKLLLISNSLSGFIPQE----IGNCS--SLVR 470
Query: 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395
L +G I G+IP+ +G LKK+ LD SN++ G +P +G+ L IDLS NS+ G
Sbjct: 471 LRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSL 530
Query: 396 PKEFCGLPAL-ALQEAKNRADGN-QLQLPLFVPETKCALYNQQYNKLFSLPPAIY----- 448
P L L L + N+ G L V K L ++ S+P ++
Sbjct: 531 PNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSG--SIPTSLGMCSGL 588
Query: 449 ----LRNNGLNGSIPIEIGNVMFLHV-LDLSLNNFS 479
L +N L+G IP E+G++ L + L+LS N +
Sbjct: 589 QLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLT 624
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| TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 281 (104.0 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 112/399 (28%), Positives = 174/399 (43%)
Query: 102 DFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS-- 159
D S NYF G +LP +GN L+ G IP + + ++L D+ + N+ +
Sbjct: 208 DLSWNYFTG--ELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSE 265
Query: 160 GAISNGVVN-LTSLNIGKLANLKSLK---LHTNSLSGFLPQFLMXXXXXXXXXXXXXXFR 215
G S +N LT + L NL SL L +N LP + F
Sbjct: 266 GPDSMSSLNRLTDFQL-MLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFS 324
Query: 216 GDLSAYNFSTLHNLHTIDLGNNNFTGSFPL-TLTSCMFLTAIRLSGNKIEEQISPTILAL 274
G + + F L +L +DLG N+F+G + ++S L + + N I I +IL L
Sbjct: 325 GTIPSSLFM-LPSLIKLDLGTNDFSGPLKIGNISSPSNLQELYIGENNINGPIPRSILKL 383
Query: 275 VSVSYXXXXXXXXXXXTGAI---GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQ 331
V +S TG I I + K+LR L L I + I+ S +
Sbjct: 384 VGLS----ALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLN--------ISSSHHLPS 431
Query: 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391
+++ L + +C I Q P +L L LD+ +NQI G +P WL +P L Y++++ N+
Sbjct: 432 HMMHLILSSCNIS-QFPKFLENQTSLYHLDISANQIEGQVPEWLWRLPTLRYVNIAQNAF 490
Query: 392 SGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPET-KCALYNQQYNKLFSLPPA---- 446
SGE P + + N+ G ++P V E L N ++ S+PP
Sbjct: 491 SGELT--MLPNPIYSFIASDNKFSG---EIPRAVCEIGTLVLSNNNFSG--SIPPCFEIS 543
Query: 447 ------IYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
++LRNN L+G IP E + +L LD+ N S
Sbjct: 544 NKTLSILHLRNNSLSGVIPEESLHG-YLRSLDVGSNRLS 581
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00033978001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1078 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 479 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-39 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 7e-31 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-17 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-08 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.001 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.001 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-39
Identities = 146/483 (30%), Positives = 222/483 (45%), Gaps = 90/483 (18%)
Query: 17 QETLLSLNFNAS-NPPL----NWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPF 71
+E L L+F +S N PL NW+ S D CLW+GI C++ ++V + L + + G I
Sbjct: 29 EELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA 88
Query: 72 TGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQLPSGLGNFSKLQT 126
+L ++ +NLS+N LS P F L L+ S+N F G G+ L+T
Sbjct: 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG----SIPRGSIPNLET 144
Query: 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLH 186
+ LSG IP+D+ + +SL+ + L N L G I N + NLTSL L L
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF--------LTLA 196
Query: 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT 246
+N L G +P+ L +L + L NN G++ Y L +L+ +DL NN TG P +
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSS 255
Query: 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRML 306
L + L + L NK+ I P+I +L + L +++N+LS G I L+
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS---GEIPELV-------- 304
Query: 307 LLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366
QNL +L + + G+IP L L +LQVL L SN+
Sbjct: 305 ---------------------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 367 ITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVP 426
+G IP LG NL +DLS N+++GE P+ C + GN +L LF
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-------------SSGNLFKLILFS- 389
Query: 427 ETKCALYNQQYNKLFS-LPPA---------IYLRNNGLNGSIPIEIGNVMFLHVLDLSLN 476
N L +P + + L++N +G +P E + ++ LD+S N
Sbjct: 390 -----------NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438
Query: 477 NFS 479
N
Sbjct: 439 NLQ 441
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 7e-31
Identities = 106/362 (29%), Positives = 164/362 (45%), Gaps = 32/362 (8%)
Query: 64 LRGSIYPFTGKLTHLCHLNLSHNHLSF-LSPSVPFLSILDF---SHNYFRGHCQLPSGLG 119
L G I G LT L HL+L +N+L+ + S+ L L + N G +P +
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIF 281
Query: 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL------- 172
+ KL + + LSG IP+ V +LE + L N +G I + +L L
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341
Query: 173 ---------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
N+GK NL L L TN+L+G +P+ L + NL L L N+ G++ +
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SL 400
Query: 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSIN 283
+L + L +N+F+G P T + + +S N ++ +I+ + S+ LS+
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460
Query: 284 NNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343
N G + G K L L L + F A+P + L+ L + ++
Sbjct: 461 RNKFF---GGLPDSFGSKRLENLDLSRNQFSGAVPR------KLGSLSELMQLKLSENKL 511
Query: 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP 403
G+IP L KKL LDL NQ++G IP MP L +DLS N +SGE PK +
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571
Query: 404 AL 405
+L
Sbjct: 572 SL 573
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 4e-17
Identities = 90/338 (26%), Positives = 143/338 (42%), Gaps = 34/338 (10%)
Query: 56 HLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF----LSILDFSHNYFRGH 111
+L+L L G I P L L L+LS N LS P + L IL N F G
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG- 322
Query: 112 CQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV---N 168
++P L + +LQ + + SG IP ++ +L + L N L+G I G+ N
Sbjct: 323 -KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381
Query: 169 LTSL-------------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR 215
L L ++G +L+ ++L NS SG LP + L++ NN +
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441
Query: 216 GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV 275
G +++ + + +L + L N F G P + S L + LS N+ + + +L
Sbjct: 442 GRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLS 499
Query: 276 SVSYLSINNNNLSNITGAI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334
+ L ++ N LS G I L CK L L L IP S L
Sbjct: 500 ELMQLKLSENKLS---GEIPDELSSCKKLVSLDLSHNQLSGQIPA------SFSEMPVLS 550
Query: 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372
L + ++ G+IP LG ++ L +++ N + G +P
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 17/227 (7%)
Query: 48 CDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDF 103
C S + L L L G I G L + L N S PS +P + LD
Sbjct: 377 CSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435
Query: 104 SHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAIS 163
S+N +G ++ S + LQ + G +PD + LE++ L NQ SGA+
Sbjct: 436 SNNNLQG--RINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVP 492
Query: 164 NGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
+G L+ L LKL N LSG +P L +C L++L+L N G + A +F
Sbjct: 493 RK--------LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SF 543
Query: 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPT 270
S + L +DL N +G P L + L + +S N + + T
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395
LG+ N ++G IP + KL+ LQ ++L N I G IP LG++ +L +DLSYNS +G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 396 PKEFCGLPAL 405
P+ L +L
Sbjct: 483 PESLGQLTSL 492
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query: 31 PLNWSFSTDCCL-----WEGIKC--DSEAQ---VTHLWLPDRGLRGSIYPFTGKLTHLCH 80
PL + ++ D C+ W G C DS + L L ++GLRG I KL HL
Sbjct: 387 PLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446
Query: 81 LNLSHNHLSFLSP----SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG 136
+NLS N + P S+ L +LD S+N F G +P LG + L+ + LSG
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGNSLSG 504
Query: 137 SIPDDVSA 144
+P +
Sbjct: 505 RVPAALGG 512
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSY 388
++L + + I+G IP LG + L+VLDL N G IP LG + +L ++L+
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 389 NSISGEFPKEFCGLP 403
NS+SG P G
Sbjct: 500 NSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-07
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391
NL L + N + L L+VLDL N +T P +P+L +DLS N++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 134 LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193
L G IP+D+S L+ I+L N + G I ++G + +L+ L L NS +G
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIP--------PSLGSITSLEVLDLSYNSFNGS 481
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSA 220
+P+ L T+L LNL N+ G + A
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156
F+ L + RG +P+ + LQ+ + + G+IP + + SLE + L N
Sbjct: 419 FIDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN 476
Query: 157 QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP 195
+G+I ++G+L +L+ L L+ NSLSG +P
Sbjct: 477 SFNGSIPE--------SLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L+ LDL +N++T G +PNL +DLS N+++ P+ F GLP+L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSL 50
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 207 LNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266
L L RG + + S L +L +I+L N+ G+ P +L S L + LS N
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 267 ISPTILALVSVSYLSINNNNLS-NITGAIG 295
I ++ L S+ L++N N+LS + A+G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 17/205 (8%)
Query: 202 TNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG 260
+ L++L+L + L N L L ++DL N + L LT++ L
Sbjct: 67 SRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDN 125
Query: 261 NKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRM-----------LLLC 309
N I + L ++ L +++N + ++ + L KNL + L
Sbjct: 126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185
Query: 310 KIFFHEAIPDEN--QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQI 367
+ + + L L + N I ++ + L LK L L+L +N++
Sbjct: 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244
Query: 368 TGPIPGWLGNMPNLFYIDLSYNSIS 392
+P +GN+ NL +DLS N IS
Sbjct: 245 E-DLPESIGNLSNLETLDLSNNQIS 268
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 183 LKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 242
L L L GF+P + +L ++NL N+ RG++ + ++ +L +DL N+F GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS 481
Query: 243 FPLTLTSCMFLTAIRLSGN 261
P +L L + L+GN
Sbjct: 482 IPESLGQLTSLRILNLNGN 500
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 33/148 (22%), Positives = 47/148 (31%), Gaps = 56/148 (37%)
Query: 232 IDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
+ L N G P ++ L +I LSGN I I P+ L +IT
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS----------------LGSIT 466
Query: 292 GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWL 351
L VL + G IP L
Sbjct: 467 S----------------------------------------LEVLDLSYNSFNGSIPESL 486
Query: 352 GKLKKLQVLDLGSNQITGPIPGWLGNMP 379
G+L L++L+L N ++G +P LG
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 59/254 (23%), Positives = 86/254 (33%), Gaps = 57/254 (22%)
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSA--YNFSTLHNLHTIDLGNNNFTGSFPLTLTSC- 250
L Q L L L+L N D + +L + L NNN G L L +
Sbjct: 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKL-NNNGLGDRGLRLLAKG 131
Query: 251 -----MFLTAIRLSGNKIE----EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCK 301
L + L N++E E ++ + A + L++ NN + G GI
Sbjct: 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI----GDAGIR---- 183
Query: 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK----GQIPTWLGKLKKL 357
L + NL VL + N + + L LK L
Sbjct: 184 -----ALAEGLKA---------------NCNLEVLDLNNNGLTDEGASALAETLASLKSL 223
Query: 358 QVLDLGSNQITGPI-----PGWLGNMPNLFYIDLSYNSISG-------EFPKEFCGLPAL 405
+VL+LG N +T L +L + LS N I+ E E L L
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283
Query: 406 ALQEAKNRADGNQL 419
L+ K +G QL
Sbjct: 284 DLRGNKFGEEGAQL 297
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.72 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.65 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.63 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.47 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.25 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.19 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.17 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.15 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.12 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.11 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.11 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.11 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.1 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.05 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.02 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.01 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.98 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.89 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.76 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.73 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.7 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.66 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.65 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.48 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.45 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.39 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.32 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.22 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.12 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.98 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.94 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.94 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.81 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.77 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.64 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.63 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.61 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.57 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.53 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.38 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.27 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.2 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.76 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.51 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.84 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.22 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.1 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.76 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 92.94 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.5 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 89.89 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.8 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.8 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.22 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.43 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.29 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.29 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.85 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 86.44 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 83.25 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 82.28 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=440.29 Aligned_cols=457 Identities=29% Similarity=0.443 Sum_probs=266.2
Q ss_pred ChhhHHHHHHhHhcCCCCC---CCCCCCCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCC
Q 047549 13 NQIDQETLLSLNFNASNPP---LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS 89 (479)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~---~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~ 89 (479)
.++|+.|+++||+.+.++. ..|....+||.|.||+|+..++|+.|+++++++++.++..+..+++|++|++++|++.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 4578899999999986543 6798788999999999998889999999999999998889999999999999999887
Q ss_pred CcCC-----CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCc
Q 047549 90 FLSP-----SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISN 164 (479)
Q Consensus 90 ~~~~-----~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 164 (479)
+..| ..++|++|++++|.+++ .+|. +.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTG--SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCcccc--ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 6443 23677777777777654 3332 2345555555555555545555555555555555555555544444
Q ss_pred cccccCCC----------------CCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCC
Q 047549 165 GVVNLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228 (479)
Q Consensus 165 ~~~~l~~l----------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 228 (479)
.+.+++.+ .+.++++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.++. .+..+++
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~ 261 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKN 261 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCC
Confidence 33222111 133455566666666666655566666666666666666665544443 4555666
Q ss_pred CcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEc
Q 047549 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308 (479)
Q Consensus 229 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l 308 (479)
|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+..... ..+..+++|+.|++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L 339 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQL 339 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEEC
Confidence 6666666666655555555556666666666666655555555566666666666665543211 23445556666666
Q ss_pred cCccccccCCCCcccc------------------ccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccc
Q 047549 309 CKIFFHEAIPDENQIT------------------ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370 (479)
Q Consensus 309 ~~n~~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (479)
++|.+.+.+|...... .....+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 6665555444322200 0000223344444444444444445555555555555555555555
Q ss_pred cCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCC-C-----
Q 047549 371 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSL-P----- 444 (479)
Q Consensus 371 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~-~----- 444 (479)
.|..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|...+. .+......+++.+++++|+++.. |
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG--LPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee--cCcccccccceEEECcCCccCCccChhhhh
Confidence 555555566666666666666655555555555666555554432211 12222334455555555555422 1
Q ss_pred ----CeEEccCCcccccCChhhhcccccCeeeCCCCCC
Q 047549 445 ----PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 445 ----~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
..|++++|++.+.+|..+.++++|++|++++|++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 1244444444444444444444444444444443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=388.32 Aligned_cols=412 Identities=29% Similarity=0.394 Sum_probs=261.2
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
++++|++++|.+.+.+|..++.+++|++|++++|.+.+..|.. ++|++|++++|.+.+ .+|..++++++|++|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC--cCChHHcCcCCccEEE
Confidence 4555555555555555666666666666666666665544332 566666666666654 4566666666666666
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
+++|.+.+.+|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..|..+..+++|+.|+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChh--------HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 6666666666666666666677776666666655554 44567777777777777777777777777777777
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+.+.++. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 291 Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 291 LSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 777777765554 5667777777777777777777777777777777777777777767777777777777777777665
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCcccc------------------ccccccCCccEEEeeCCcceecCchh
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT------------------ISSYAFQNLVVLGIGNCEIKGQIPTW 350 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~------------------~~~~~~~~L~~L~l~~n~l~~~~~~~ 350 (479)
...+ ..+..+++|+.|++++|.+.+.+|...... .....+++|+.|++++|.+.+.++..
T Consensus 370 ~~~p--~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 370 GEIP--EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred eeCC--hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 3211 223334444444444444444433322100 00013445555555555555555555
Q ss_pred hcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccc
Q 047549 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKC 430 (479)
Q Consensus 351 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l 430 (479)
+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++..|..|.++++|+.+++++|......+ ..+....+|
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L 525 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKL 525 (968)
T ss_pred hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hHHcCccCC
Confidence 5555555555555555555555433 23566677777777776777777777777777776654433221 233445667
Q ss_pred cccccccccccCC-C---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 431 ALYNQQYNKLFSL-P---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 431 ~~~~l~~n~l~~~-~---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+.+++++|.+++. | ..|++++|++++.+|..+.++++|+.|++++|+++
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 7788888877653 2 25788888888888888888888888888888763
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=280.21 Aligned_cols=346 Identities=20% Similarity=0.223 Sum_probs=276.4
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
...+.|++++|.+...-+..+-++++|+++++..|.++.+|... ..|+.|+|.+|.++. .-.+.+.-++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~s--v~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISS--VTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccc--ccHHHHHhHhhhhhhh
Confidence 35678999999998887888899999999999999888776433 579999999998874 2234677788999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
|+.|.|+......|..-.++++|+|+.|.++...... |..+.+|..|.|+.|.++...+..|..+++|+.|+
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--------F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--------FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccccccc--------ccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 9999988444446777788999999999888654443 56677888999999999977777788899999999
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+..|.+. .+....|.++++|+.|.+.+|.+...-...|..+.+++.|+|..|.++..-.+++.+++.|+.|++++|.|.
T Consensus 228 LnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 228 LNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred cccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 9999886 444457888899999999999888666777888889999999999988887888888899999999999888
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
.+.. .....+++|+.|++++|.++...+..+. .+..|++|.+++|.+...-...|..+++|++|||++|.+.
T Consensus 307 rih~--d~WsftqkL~~LdLs~N~i~~l~~~sf~------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 307 RIHI--DSWSFTQKLKELDLSSNRITRLDEGSFR------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred eeec--chhhhcccceeEeccccccccCChhHHH------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 6654 4556678899999998888776555444 5678888888888888555567888888889999888887
Q ss_pred cccC---cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCC
Q 047549 369 GPIP---GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADG 416 (479)
Q Consensus 369 ~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 416 (479)
..+. ..|..+++|+.|++.+|++..+...+|.+++.|+.|++.+|...
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 5544 34677888888899888888667778888888888777665543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=272.91 Aligned_cols=362 Identities=22% Similarity=0.251 Sum_probs=234.3
Q ss_pred CCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEE
Q 047549 77 HLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDIS 152 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 152 (479)
.-++|++++|.+...-+. .++|+++++.+|.++ .+|....-..+|++|+|..|.|+..-.+++..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt---~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT---RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh---hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 456688888877655332 377777777777777 5676666666777777777777755556677777777777
Q ss_pred CCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEE
Q 047549 153 LPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232 (479)
Q Consensus 153 l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 232 (479)
||.|.++.....+ |..-.++++|+|++|.|+..-...|..+.+|..|.++.|.++ .+|...|..+++|+.|
T Consensus 156 LSrN~is~i~~~s--------fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 156 LSRNLISEIPKPS--------FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhchhhcccCCC--------CCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhh
Confidence 7777776543332 344466777777777777666667777777777777777776 6666677777777777
Q ss_pred EccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcc
Q 047549 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF 312 (479)
Q Consensus 233 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~ 312 (479)
++..|.+.-.---.|..+++|+.|.+..|++.......|..+.+++.|+|..|+++.+.. ..+-++..|+.|++++|.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhh
Confidence 777777763323456677777777777777777666677777777777777777765543 445566677777777776
Q ss_pred ccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 313 FHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+....+..+. ..++|+.|++++|+++...+..|..+..|++|.|++|++...-...|..+++|+.|||++|.++
T Consensus 305 I~rih~d~Ws------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 305 IQRIHIDSWS------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred hheeecchhh------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 6655444443 3466777777777777555666666777777777777776555556666777777777777766
Q ss_pred ccCCc---cccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccC
Q 047549 393 GEFPK---EFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLH 469 (479)
Q Consensus 393 ~~~p~---~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~ 469 (479)
..+-+ .|.++++|+.|.+.+|....+ +-.+|.+...|+ .|||.+|.+...-|..|.++ .|+
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE--------------~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALE--------------HLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeec-chhhhccCcccc--------------eecCCCCcceeecccccccc-hhh
Confidence 55432 355566665544443322211 112222222221 35666676665666666666 666
Q ss_pred eeeCC
Q 047549 470 VLDLS 474 (479)
Q Consensus 470 ~L~ls 474 (479)
.|-++
T Consensus 443 ~Lv~n 447 (873)
T KOG4194|consen 443 ELVMN 447 (873)
T ss_pred hhhhc
Confidence 66554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-35 Score=261.88 Aligned_cols=397 Identities=27% Similarity=0.343 Sum_probs=253.6
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.++.+++.++++. ..|++++.+..++.++.++|.+...++.. .+++.++.++|.+. .+|+.++.+..++.++.
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~---el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK---ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee---ecCchHHHHhhhhhhhc
Confidence 4566666666665 45666666666777777777666655444 56667777777766 56667777777777777
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
..|++. ..|..+..+.++..+++.+|.+....|.. -+|+.|++++...|.++ .+|..++.+.+|..|++
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~---------i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENH---------IAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYL 213 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHH---------HHHHHHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence 777776 56666666777777777777766544443 23778888888888777 57788888888888999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCcc-CcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
..|++. .+| .|..+..|++++++.|.++ .+|.. .+++.++..||++.|++.. .|+.++.+.+|.+||+++|.++
T Consensus 214 ~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 214 RRNKIR-FLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred hhcccc-cCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc
Confidence 999887 666 5778888888888888887 55544 4478888888888888876 6777888888888888888888
Q ss_pred CCCCccccccCCCCCcEEEccCcccccc-----------------------CC---CC--------ccccc-cccccCCc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEA-----------------------IP---DE--------NQITI-SSYAFQNL 333 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----------------------~~---~~--------~~~~~-~~~~~~~L 333 (479)
..|. .++++ .|+.|.+.+|.+... .+ +. ....+ ......+.
T Consensus 289 ~Lp~---sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 289 SLPY---SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred cCCc---ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 7764 45566 777777777764110 00 00 00000 00011233
Q ss_pred cEEEeeCCcceecCchh-hcC--CCCCCEEeCCCCccc-----------------------cccCcccCCCCCCcEEEcc
Q 047549 334 VVLGIGNCEIKGQIPTW-LGK--LKKLQVLDLGSNQIT-----------------------GPIPGWLGNMPNLFYIDLS 387 (479)
Q Consensus 334 ~~L~l~~n~l~~~~~~~-l~~--l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~ 387 (479)
+.|++++-+++ .+|+. |.. -.-.+.+++++|++. +.+|..++.+++|+.|+++
T Consensus 365 kiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 365 KILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 44555554444 22322 211 111344444444432 1344445556666666666
Q ss_pred CCcccccCCccccCCccccccccccccCCCCcccCccccccccc-ccccccccccCCCC----------eEEccCCcccc
Q 047549 388 YNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCA-LYNQQYNKLFSLPP----------AIYLRNNGLNG 456 (479)
Q Consensus 388 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~n~l~~~~~----------~l~ls~n~l~~ 456 (479)
+|.+. .+|..+..+..|+.++++.|-... .|.+....+.. .+--++|++..++. .||+.+|.+.
T Consensus 444 NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~---lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq- 518 (565)
T KOG0472|consen 444 NNLLN-DLPEEMGSLVRLQTLNLSFNRFRM---LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ- 518 (565)
T ss_pred cchhh-hcchhhhhhhhhheeccccccccc---chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-
Confidence 66665 566666666666666665553221 22222222221 12223355555543 4899999999
Q ss_pred cCChhhhcccccCeeeCCCCCCC
Q 047549 457 SIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 457 ~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.+|+.++++.+|++|++++|+|+
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhhccccceeEEEecCCccC
Confidence 99999999999999999999984
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-33 Score=261.02 Aligned_cols=307 Identities=22% Similarity=0.339 Sum_probs=197.3
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcC---CCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLS---PSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.++++-|.|...++. .+|+.++.+.+|++|.+++|++..+. ...|.||.+++.+|++... .+|..+.++..|..|
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIFRLKDLTIL 108 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhcccccceee
Confidence 345666666666654 46777777777777777777765443 3447777777777777543 567777777777777
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCee
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITL 207 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 207 (479)
|++.|++. ..|..+...+++-+|+||+|.+. .+|..+ |.++..|-.|+|++|.+. .+|..+..+..|+.|
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~l-------finLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSL-------FINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchH-------HHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 77777777 66777777777777777777766 344443 445666777777777777 456666777777777
Q ss_pred eccCCcCccccCccccCCCCCCcEEEccCCccc-ccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 208 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT-GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
++++|.+. ...-..+..+++|++|.+++.+-+ .-+|..+..+.+|..+|++.|.+.. .|+.+..+++|+.|+|++|+
T Consensus 179 ~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCc
Confidence 77777664 222223344566667777665433 2466667777777777777777654 56777777777777777777
Q ss_pred CCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 287 l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
++.+.. ... .+.+|++|+++.|+++ .+|+.+.+++.|+.|.+.+|+
T Consensus 257 iteL~~---~~~------------------------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 257 ITELNM---TEG------------------------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred eeeeec---cHH------------------------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence 764432 111 3345666666666665 556666666666666666665
Q ss_pred cc-cccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 367 IT-GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 367 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
+. ..+|..++.+.+|+.+...+|.+. ..|+.++.|..|+
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 54 235555666666666666666665 5666666666554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-31 Score=252.92 Aligned_cols=312 Identities=25% Similarity=0.330 Sum_probs=252.0
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCC--CcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS--FLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.+.+|.+.+|++.. +...+..++.||.++++.|++. |+++.. ..|+.||||+|+++ ..|..+...+++-+|
T Consensus 56 kLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~---EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR---EVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh---hcchhhhhhcCcEEE
Confidence 68899999999873 4567889999999999999886 455554 78999999999999 789999999999999
Q ss_pred EccccccccCCCcc-CCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCe
Q 047549 128 RAGFSYLSGSIPDD-VSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLIT 206 (479)
Q Consensus 128 ~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 206 (479)
++++|+|. .+|.. |.+++.|-.|+||+|++...+|. +.++..|++|.|++|.+...-...+..+++|+.
T Consensus 132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ---------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ---------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred EcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH---------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 99999999 66654 67899999999999999865554 456789999999999887544444556677888
Q ss_pred eeccCCcCc-cccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCC
Q 047549 207 LNLRINNFR-GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNN 285 (479)
Q Consensus 207 L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (479)
|.+++.+-+ ..+|. .+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|+++.. .-......+|++|+++.|
T Consensus 202 Lhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhcccccchhhcCCC-chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccc
Confidence 889887755 34665 7888999999999999998 8899999999999999999999874 344566789999999999
Q ss_pred CCCCCCCccccccCCCCCcEEEccCcccccc-CCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCC
Q 047549 286 NLSNITGAIGILMGCKNLRMLLLCKIFFHEA-IPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGS 364 (479)
Q Consensus 286 ~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 364 (479)
+++.+|. +++.+++|+.|.+.+|.++-. +|..+. .+.+|+++..++|.+. ..|+.+..|..|+.|.|+.
T Consensus 279 QLt~LP~---avcKL~kL~kLy~n~NkL~FeGiPSGIG------KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 279 QLTVLPD---AVCKLTKLTKLYANNNKLTFEGIPSGIG------KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhccchH---HHhhhHHHHHHHhccCcccccCCccchh------hhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 9998774 567778888888888876532 333332 5567777777777776 6777888888888888888
Q ss_pred CccccccCcccCCCCCCcEEEccCCccc
Q 047549 365 NQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 365 n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
|++. .+|+.+.-++.|+.||+..|.--
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCc
Confidence 8877 67777777888888888877544
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-33 Score=249.01 Aligned_cols=394 Identities=21% Similarity=0.276 Sum_probs=310.5
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.+..+.+++|.+. .+.+.+.++..|.+|++++|++...++.. ..+..++.++|.+. .+|+.+..+..+.++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls---~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS---ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh---hccHHHhhhhhhhhhhc
Confidence 4778899999876 45677889999999999999999988876 67889999999999 79999999999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
++|.+. .+++.++.+..++.++..+|+++.. |++ +..+.++..+++.+|+++...|..+. ++.|+.++.
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~--------~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQISSL-PED--------MVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDC 190 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccccC-chH--------HHHHHHHHHhhccccchhhCCHHHHH-HHHHHhccc
Confidence 999999 8888999999999999999999854 444 34567888999999999966555555 999999999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
..|.+. .+|. .++.+.+|..|++.+|++. ..| .|..|..|+++.++.|.+.....+...+++++..||+..|++++
T Consensus 191 ~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 191 NSNLLE-TLPP-ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred chhhhh-cCCh-hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 999886 7886 7899999999999999998 677 78999999999999999987666666799999999999999998
Q ss_pred CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec-----------------------
Q 047549 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ----------------------- 346 (479)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------------------- 346 (479)
+|.. ++.+++|++||+++|.+++-.+.. . .+ .|+.|-+.||.+...
T Consensus 267 ~Pde---~clLrsL~rLDlSNN~is~Lp~sL-g------nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 267 VPDE---ICLLRSLERLDLSNNDISSLPYSL-G------NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred CchH---HHHhhhhhhhcccCCccccCCccc-c------cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 8854 556788999999999998754432 1 33 677777777765411
Q ss_pred ---------------Cch---hhcCCCCCCEEeCCCCccccccCcccCCCC--CCcEEEccCCcccc-------------
Q 047549 347 ---------------IPT---WLGKLKKLQVLDLGSNQITGPIPGWLGNMP--NLFYIDLSYNSISG------------- 393 (479)
Q Consensus 347 ---------------~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~------------- 393 (479)
.+. ......+.+.|++++-+++..+.+.|..-. -.+..+++.|++..
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 001 112235678899998888843333333221 14555566555541
Q ss_pred ----------cCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCe---------EEccCCcc
Q 047549 394 ----------EFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA---------IYLRNNGL 454 (479)
Q Consensus 394 ----------~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~---------l~ls~n~l 454 (479)
.+|..++.+++|..++++||.-.... . .+.....+|.+|+++|+|..+|+. +-.++|++
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-~-e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-E-EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhhhcc-h-hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence 44556777888999999988766443 2 223344589999999999998873 44577999
Q ss_pred cccCChhhhcccccCeeeCCCCCC
Q 047549 455 NGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 455 ~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
...-|+++.++.+|++||+.+|.+
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred cccChHHhhhhhhcceeccCCCch
Confidence 966777799999999999999976
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-29 Score=248.89 Aligned_cols=361 Identities=22% Similarity=0.266 Sum_probs=249.7
Q ss_pred EEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcc
Q 047549 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130 (479)
Q Consensus 54 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~ 130 (479)
+++|++++|.+. ..|..+..+.+|+.|.++.|.|...+... .+|++++|.+|.+. .+|..+..+.+|+.|+++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~---~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ---SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh---cCchhHHhhhcccccccc
Confidence 888999988865 56888888899999999999888877554 78999999999888 788899999999999999
Q ss_pred ccccccCCCccCCCCCCCCEEECCCC-------------------cccccCCccccccCCCCCCCCCCCCEEEccCCcCc
Q 047549 131 FSYLSGSIPDDVSAAASLEDISLPVN-------------------QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191 (479)
Q Consensus 131 ~n~~~~~~~~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~ 191 (479)
+|.+. .+|..+..+..++.+..++| .+.+.++..+..+ .. .|+|.+|.+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l--------~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL--------TH--QLDLRYNEME 191 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh--------he--eeecccchhh
Confidence 99887 56666655555555555555 3333333222222 21 2555555444
Q ss_pred cccchh-----------------hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 192 GFLPQF-----------------LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 192 ~~~~~~-----------------l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
...... --.-++++.|+.+.|.++ .+. .-....+|++++++.|+++ .+|.++..+.+|+
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLD--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce-eec--cccccccceeeecchhhhh-cchHHHHhcccce
Confidence 110000 012356667777777765 221 1123457888888888887 5678888888888
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccc-----------
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQI----------- 323 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----------- 323 (479)
.++..+|.++. .|..+....+|+.+++.+|.+..++. ...+.+.|++|++..|.+....+..+.+
T Consensus 268 ~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~---~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 268 ALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPP---FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred EecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCC---cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence 88888888854 56667777777888877777776653 3455677777777777664322211111
Q ss_pred --------cccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccC
Q 047549 324 --------TISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395 (479)
Q Consensus 324 --------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 395 (479)
......++.|+.|++.+|.+++.....+.+.++|+.|+|++|++.......+.++..|++|+||+|+++ .+
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL 422 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence 011123456888999999999887778999999999999999998555567888999999999999999 88
Q ss_pred CccccCCccccccccccccCCCCcccCccccccccccccccccccc
Q 047549 396 PKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLF 441 (479)
Q Consensus 396 p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~ 441 (479)
|++..++..|+.+.+-+|... ..|.+....+++.+|++.|+|+
T Consensus 423 p~tva~~~~L~tL~ahsN~l~---~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLL---SFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCcee---echhhhhcCcceEEecccchhh
Confidence 899999999998887655432 2334445555555555555543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-27 Score=230.91 Aligned_cols=380 Identities=22% Similarity=0.258 Sum_probs=258.1
Q ss_pred EECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 57 LWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 57 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
+|++.++++ .+|..+.....+..|+++.|-+...|-.+ -.|+.||+++|++. ..|..+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~---~fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS---SFPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc---cCCchhhhHHHHhhcccchh
Confidence 455666654 45666655556778888877665533221 34888888888887 57888888889999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.+. ..|.....+.+|+++.|.+|.+. ..|.+ +..+++|++|+++.|++. .+|..+..++.++.+.+++|
T Consensus 79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~--------~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPAS--------ISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hHh-hCchhhhhhhcchhheeccchhh-cCchh--------HHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcc
Confidence 888 67777888889999999888876 34443 456788899999999888 57888888888888888888
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.... .++... ++.+++..|.+.+.++.....++. .+++++|.+.. -.+..+.+|+.+....|++..+..
T Consensus 148 ~~~~-----~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~ 216 (1081)
T KOG0618|consen 148 EKIQ-----RLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEI 216 (1081)
T ss_pred hhhh-----hhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEe
Confidence 3221 222222 788888888888777777777666 78999998762 346677888888888888875432
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
..++++.|+.+.|.++...+. ....+|+++++++|++. .+|+|+..+.+|+.+...+|+++ .+|
T Consensus 217 ------~g~~l~~L~a~~n~l~~~~~~--------p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp 280 (1081)
T KOG0618|consen 217 ------SGPSLTALYADHNPLTTLDVH--------PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALP 280 (1081)
T ss_pred ------cCcchheeeeccCcceeeccc--------cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhH
Confidence 346788888888887743332 24467888888888888 56688888888888888888885 555
Q ss_pred cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCccc----------------------Ccc--cccc
Q 047549 373 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQL----------------------PLF--VPET 428 (479)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~----------------------~~~--~~~~ 428 (479)
..+....+|+.|++.+|.+. .+|....+++.|+.|++..|........ +.+ ....
T Consensus 281 ~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 55556666666666666666 4555555566666666554433332221 111 0112
Q ss_pred cccccccccccccC--CC--------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 429 KCALYNQQYNKLFS--LP--------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 429 ~l~~~~l~~n~l~~--~~--------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|+.+++.+|.|+. +| +.|++++|++...-...+.++..|+.|+||+|+|+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 23444445555542 11 13677777777333345666777777777777664
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=218.53 Aligned_cols=331 Identities=21% Similarity=0.228 Sum_probs=235.5
Q ss_pred CCCEEEEECCCCCccc--cccccccCCCCCCeeecCCCcCC------CcCC-CC----CCCCEEEcCCcccccCCCCCCc
Q 047549 51 EAQVTHLWLPDRGLRG--SIYPFTGKLTHLCHLNLSHNHLS------FLSP-SV----PFLSILDFSHNYFRGHCQLPSG 117 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~--~~~~~l~~l~~L~~L~L~~n~l~------~~~~-~~----~~L~~L~L~~n~l~~~~~l~~~ 117 (479)
..+++.+.+.-..+.. ..+.++..+++|+.|.+..+... ...| .+ ++|+.|++.++.+. .+|..
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~---~lP~~ 607 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR---CMPSN 607 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC---CCCCc
Confidence 3456666554333321 23456788999999999766432 1112 12 57999999999887 68887
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+ ...+|+.|+++++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..
T Consensus 608 f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---------ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 608 F-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD---------LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred C-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc---------cccCCcccEEEecCCCCccccchh
Confidence 7 4688999999999988 6778888899999999998764445553 456889999999998766678889
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.....+|. .+ ++++|+.|++++|.....+|.. .++|+.|++++|.+.. +|..+ .+++|
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L 749 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENL 749 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-ccccc
Confidence 99999999999998765446764 23 6889999999998765455542 4678999999998865 44433 56788
Q ss_pred CEEEccCCCCCCCCCcc-----ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhc
Q 047549 278 SYLSINNNNLSNITGAI-----GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~-----~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 352 (479)
++|.+.++....+.... .....+++|+.|++++|.....+|..+. .+++|+.|++++|...+.+|...
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~------~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ------NLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh------CCCCCCEEECCCCCCcCeeCCCC-
Confidence 88888764432221111 1122346788888888876666665443 67788888888876544666554
Q ss_pred CCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 353 KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
.+++|+.|++++|.....+|.. ..+|++|++++|.++ .+|.++..+++|+.+++.++
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 6788888888887655445442 357888888888887 67778888888887776654
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=201.92 Aligned_cols=260 Identities=20% Similarity=0.237 Sum_probs=156.5
Q ss_pred EEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccc
Q 047549 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133 (479)
Q Consensus 54 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~ 133 (479)
-..|++++++++ .+|+.+. ++|+.|++.+|+++.++...++|++|++++|.++ .+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt---sLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT---SLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC---cccCc---ccccceeeccCCc
Confidence 457899999988 5677665 4899999999999887766688888888888887 45542 3577888888888
Q ss_pred cccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc
Q 047549 134 LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN 213 (479)
Q Consensus 134 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 213 (479)
+. .+|.. ..+|+.|++++|+++.. |. .+++|+.|++++|++++ +|.. ...|+.|++++|.
T Consensus 274 L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~-----------~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~ 333 (788)
T PRK15387 274 LT-HLPAL---PSGLCKLWIFGNQLTSL-PV-----------LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQ 333 (788)
T ss_pred hh-hhhhc---hhhcCEEECcCCccccc-cc-----------cccccceeECCCCcccc-CCCC---cccccccccccCc
Confidence 77 45542 24677788888877632 22 13567778888777774 3332 2356677777777
Q ss_pred CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCc
Q 047549 214 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGA 293 (479)
Q Consensus 214 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (479)
+. .+|. ...+|++|++++|+++ .+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|..
T Consensus 334 L~-~LP~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l 400 (788)
T PRK15387 334 LT-SLPT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL 400 (788)
T ss_pred cc-cccc----cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc
Confidence 75 4442 1246777777777776 34432 2456666666666664 3322 23566666666666644421
Q ss_pred cccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 294 IGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 294 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
.++|+.|++++|.+.. +|. .+.+|+.|++++|+++ .+|..+..++.|+.|++++|++.+..+
T Consensus 401 ------~s~L~~LdLS~N~Lss-IP~---------l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 ------PSELKELMVSGNRLTS-LPM---------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred ------ccCCCEEEccCCcCCC-CCc---------chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 1345555555554432 221 1123444455555444 344444444455555555555444333
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-24 Score=194.12 Aligned_cols=350 Identities=21% Similarity=0.199 Sum_probs=210.4
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEc-CCcccccCCCCCC-cCCCCCCC
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDF-SHNYFRGHCQLPS-GLGNFSKL 124 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L-~~n~l~~~~~l~~-~~~~l~~L 124 (479)
....+.|+|..|.|+...+.+++.+++||+|||++|+|+.+.|.. ++|.+|-+ ++|.|+ .+|. .|+.+..+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~---~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT---DLPKGAFGGLSSL 142 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh---hhhhhHhhhHHHH
Confidence 346899999999999988899999999999999999999987765 55555555 448888 5666 57778888
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCC----------------------------CCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------------------NIGK 176 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l----------------------------~~~~ 176 (479)
+.|.+.-|++.-...+.|..++++..|.+.+|.+.......+..+..+ .+++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 888888887775556667777777777777776654332232222111 0000
Q ss_pred CCC----------------------CCEE---EccCCcCcccc-chhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 177 LAN----------------------LKSL---KLHTNSLSGFL-PQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 177 ~~~----------------------L~~L---~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
... ++.+ ..+.+...... ...|..+++|++|++++|+++ .+...+|.....++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQ 301 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhh
Confidence 000 0000 00111111111 234667778888888888877 55556777777888
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCC--------------CCcccc
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI--------------TGAIGI 296 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------~~~~~~ 296 (479)
+|++..|++...-...|..+..|+.|++++|+|+...|.+|..+.+|.+|++-.|.+.=- ......
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 888888877766566677777788888888888777777777777777777776655300 000011
Q ss_pred ccCCCCCcEEEccCcccc---ccCCCCcccccccc---ccCCcc-EEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 297 LMGCKNLRMLLLCKIFFH---EAIPDENQITISSY---AFQNLV-VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 297 l~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~~~---~~~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
.+....++.+.++...+. ...|++.....+.. .++-+. +...++..++ .+|..+. ..-+++++.+|.++
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~- 457 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT- 457 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-
Confidence 222334555555544332 22333222111111 111121 2223333333 3333322 23456677777776
Q ss_pred ccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 370 PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 370 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
.+|.. .+.+| .+|+++|+++...-..|.++++|..+.++
T Consensus 458 ~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlils 496 (498)
T KOG4237|consen 458 SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILS 496 (498)
T ss_pred ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEe
Confidence 45544 44566 77777777775556667777777666554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=209.00 Aligned_cols=330 Identities=18% Similarity=0.201 Sum_probs=190.9
Q ss_pred CCCEEEEECCCCC------ccccccccccCCC-CCCeeecCCCcCCCcCCCC--CCCCEEEcCCcccccCCCCCCcCCCC
Q 047549 51 EAQVTHLWLPDRG------LRGSIYPFTGKLT-HLCHLNLSHNHLSFLSPSV--PFLSILDFSHNYFRGHCQLPSGLGNF 121 (479)
Q Consensus 51 ~~~l~~L~l~~~~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~--~~L~~L~L~~n~l~~~~~l~~~~~~l 121 (479)
..+++.|.+..+. +...+|+.+..++ +|+.|.+.++.++..+..+ .+|++|++++|.+. .+|..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~---~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE---KLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc---ccccccccC
Confidence 4466666664432 2334566666654 5899999888887777655 78899999998887 677788888
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcC
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNC 201 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 201 (479)
++|+.++++++.....+|. +..+++|++|++++|.....+|.. +..+++|+.|++++|..-..+|..+ .+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s--------i~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS--------IQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh--------hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 8899999988764446664 777888999999887655566654 4557788888888764433555544 67
Q ss_pred CCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcc-------cccChhhhhcc
Q 047549 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKI-------EEQISPTILAL 274 (479)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~~~~l 274 (479)
++|+.|++++|.....+|. ...+|++|++++|.+. .+|..+ .+++|++|.+.++.. ....+..+...
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 7888888887764434432 2456777888777765 455433 345555555544221 11111112223
Q ss_pred CCCCEEEccCCCC-CCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcC
Q 047549 275 VSVSYLSINNNNL-SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK 353 (479)
Q Consensus 275 ~~L~~L~L~~n~l-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 353 (479)
++|+.|++++|.. ..+| ..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|..
T Consensus 778 ~sL~~L~Ls~n~~l~~lP---~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~~--- 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELP---SSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPDI--- 844 (1153)
T ss_pred ccchheeCCCCCCccccC---hhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcccccccc---
Confidence 4555555555532 2222 224455555555555544333333321 2345555555555433233321
Q ss_pred CCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 354 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
.++|+.|++++|.+. .+|..+..+++|+.|++++|+--..+|..+..++.|+.++++++
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 234555555555554 34555555555555555553222234444445555544444433
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=197.50 Aligned_cols=267 Identities=18% Similarity=0.253 Sum_probs=187.8
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++.. |..
T Consensus 201 ~~~~~LdLs~~~Lt---sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsL-P~l---------- 260 (788)
T PRK15387 201 NGNAVLNVGESGLT---TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSL-PVL---------- 260 (788)
T ss_pred CCCcEEEcCCCCCC---cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcc-cCc----------
Confidence 35667888888887 6777665 47888888888888 56642 57888888888888743 321
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.++|+.|++++|.++. +|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ...|+.
T Consensus 261 -p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~ 326 (788)
T PRK15387 261 -PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCK 326 (788)
T ss_pred -ccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccc
Confidence 3578888888888874 3432 256788888888887 5553 24678888888888873 4432 245778
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
|++++|.++. +|. ...+|+.|++++|+++.+|.. .++|+.|++++|.+.. +|. ...+|+.
T Consensus 327 L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~~-LP~---------l~~~L~~ 386 (788)
T PRK15387 327 LWAYNNQLTS-LPT---LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLTS-LPA---------LPSGLKE 386 (788)
T ss_pred cccccCcccc-ccc---cccccceEecCCCccCCCCCC------Ccccceehhhcccccc-Ccc---------cccccce
Confidence 8888888876 333 124788888888888876642 2467778888887764 342 2346888
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccC
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 415 (479)
|++++|++++ +|.. .++|+.|++++|++.. +|.. ..+|+.|++++|+++ .+|..+.+++.|+.
T Consensus 387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~-------- 449 (788)
T PRK15387 387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETT-------- 449 (788)
T ss_pred EEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCe--------
Confidence 8888888873 4432 3568888888888873 5543 246778888888887 67777777776643
Q ss_pred CCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhc
Q 047549 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGN 464 (479)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~ 464 (479)
|++++|++++.++..+.+
T Consensus 450 -------------------------------LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 450 -------------------------------VNLEGNPLSERTLQALRE 467 (788)
T ss_pred -------------------------------EECCCCCCCchHHHHHHH
Confidence 788888888887776644
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-24 Score=191.13 Aligned_cols=286 Identities=20% Similarity=0.235 Sum_probs=191.6
Q ss_pred cCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCC-CcccccCC
Q 047549 87 HLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV-NQLSGAIS 163 (479)
Q Consensus 87 ~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~ 163 (479)
.++.+|... +.-..+.|..|+|+ .+|+ +|+.+++|+.|||+.|.|+.+-|++|.+++.|.+|.+.+ |+++....
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcc---cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344444444 45566777777776 5665 688899999999999999988888999998888877766 78875444
Q ss_pred ccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccc---
Q 047549 164 NGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT--- 240 (479)
Q Consensus 164 ~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--- 240 (479)
.. |+++..++-|.+.-|++.....+.|..++++..|.+.+|.+. .+....|..+..++.+.+..|.+.
T Consensus 134 ~~--------F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 134 GA--------FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hH--------hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc
Confidence 43 667788888888888888888888999999999999999887 666667888888999988888732
Q ss_pred ---------ccCCccCcCCCCCCEEEccCCcccccChhhhhcc-CCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC
Q 047549 241 ---------GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL-VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310 (479)
Q Consensus 241 ---------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~ 310 (479)
...|..++.........+.+.++..+.+..|... .++.. .++....-..+.....|..+++|+.|++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS-RLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH-hhccccCcCCcChHHHHhhcccceEeccCC
Confidence 1122223333333333444444544444443322 11111 111111111112224467777777777777
Q ss_pred ccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 311 IFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 311 n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
|.+++.-+..+. +...+++|++..|++...-...|.++..|++|+|.+|+|+-..|..|..+.+|.+|++-.|.
T Consensus 284 N~i~~i~~~aFe------~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 NKITRIEDGAFE------GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred Cccchhhhhhhc------chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 777766555444 56677788888887775455667777888888888888877777777777788888877665
Q ss_pred c
Q 047549 391 I 391 (479)
Q Consensus 391 l 391 (479)
+
T Consensus 358 ~ 358 (498)
T KOG4237|consen 358 F 358 (498)
T ss_pred c
Confidence 5
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=189.14 Aligned_cols=332 Identities=16% Similarity=0.230 Sum_probs=207.9
Q ss_pred ccccChhhHHHHHHhHhcCCCCC------CCCCCCCCCcccee----------------EEeCCCCCEEEEECCCCCccc
Q 047549 9 DQACNQIDQETLLSLNFNASNPP------LNWSFSTDCCLWEG----------------IKCDSEAQVTHLWLPDRGLRG 66 (479)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~------~~w~~~~~~c~w~~----------------v~c~~~~~l~~L~l~~~~l~~ 66 (479)
++...+++...+.++.+.+..|+ ..|...+++|.-+. |.|. .+.|+++.+.+.....
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~-~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG-GKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC-CCcccccccccccccc
Confidence 33455678888888888887775 44988889997654 3443 3446666665532211
Q ss_pred cc--cccccCCCCCCeeecCCCcCCCcCC------------CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 67 SI--YPFTGKLTHLCHLNLSHNHLSFLSP------------SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 67 ~~--~~~l~~l~~L~~L~L~~n~l~~~~~------------~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
.. +....++... .=+-..+.-.+..+ ...+...|+++++.++ .+|..+. +.|+.|++++|
T Consensus 136 ~~~~~~~~~~~~~~-w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt---sLP~~Ip--~~L~~L~Ls~N 209 (754)
T PRK15370 136 SASGSKDAVNYELI-WSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT---TIPACIP--EQITTLILDNN 209 (754)
T ss_pred cCCCCCChhhHHHH-HHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC---cCCcccc--cCCcEEEecCC
Confidence 10 0000000000 00000000000000 0045677888887777 5665543 46788888888
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
+++ .+|..+. .+|++|++++|.++. +|..+ .+.|+.|++++|.++ .+|..+. ++|+.|++++|
T Consensus 210 ~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l----------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 210 ELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL----------PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCC-cCChhhc--cCCCEEECCCCcccc-CChhh----------hccccEEECcCCccC-cCChhHh--CCCCEEECcCC
Confidence 887 5665543 478888888887763 34322 246788888888887 4555553 47888888888
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.+. .+|. .+ .++|+.|++++|+++ .+|..+. ++|+.|++++|.++.. |..+ .++|+.|++++|.++.++.
T Consensus 273 ~L~-~LP~-~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~LP~ 342 (754)
T PRK15370 273 KIS-CLPE-NL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTSLPA 342 (754)
T ss_pred ccC-cccc-cc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCccccCCh
Confidence 887 5554 22 247888888888887 4554332 4678888888888763 3332 2578888888888887664
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
.+ .++|+.|++++|.+.. +|.. ..++|++|++++|+++ .+|..+. ..|+.|++++|++. .+|
T Consensus 343 ~l-----~~sL~~L~Ls~N~L~~-LP~~--------lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 343 SL-----PPELQVLDVSKNQITV-LPET--------LPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred hh-----cCcccEEECCCCCCCc-CChh--------hcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCc
Confidence 32 2678888888887763 3331 2357888999998888 4565554 36888889999887 444
Q ss_pred c----ccCCCCCCcEEEccCCccc
Q 047549 373 G----WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 373 ~----~~~~l~~L~~L~L~~N~l~ 392 (479)
. .+...+++..|++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 4 3344578888999999887
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-20 Score=187.66 Aligned_cols=215 Identities=23% Similarity=0.363 Sum_probs=135.6
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLG 119 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~ 119 (479)
+.+.-..|. ..+.+.|++++++++. +|..+. ++|+.|++++|.++.++... ++|++|++++|.++ .+|..+.
T Consensus 168 a~~r~~~Cl-~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt---sLP~~l~ 240 (754)
T PRK15370 168 AVQRMRDCL-KNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT---SIPATLP 240 (754)
T ss_pred HHHHHHhhc-ccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc---cCChhhh
Confidence 334434554 3457889999888874 465553 47889999999888776544 67888888888887 5666443
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
..|+.|++++|.+. .+|..+. .+|+.|++++|+++. +|..+ .++|+.|++++|+++. +|..+.
T Consensus 241 --~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l----------~~sL~~L~Ls~N~Lt~-LP~~lp 303 (754)
T PRK15370 241 --DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL----------PEELRYLSVYDNSIRT-LPAHLP 303 (754)
T ss_pred --ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc----------CCCCcEEECCCCcccc-Ccccch
Confidence 46888888888877 6666553 467888888887773 44432 2467777888777774 343332
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCE
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (479)
+.|+.|++++|.+. .+|. .+ .++|+.|++++|.++ .+|..+ .++|+.|++++|.++. +|..+ .++|+.
T Consensus 304 --~sL~~L~Ls~N~Lt-~LP~-~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~ 371 (754)
T PRK15370 304 --SGITHLNVQSNSLT-ALPE-TL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITV-LPETL--PPTITT 371 (754)
T ss_pred --hhHHHHHhcCCccc-cCCc-cc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCc-CChhh--cCCcCE
Confidence 35667777777766 3442 11 246666677766665 344433 2456666666666653 33333 245666
Q ss_pred EEccCCCCCCCC
Q 047549 280 LSINNNNLSNIT 291 (479)
Q Consensus 280 L~L~~n~l~~~~ 291 (479)
|++++|.++.+|
T Consensus 372 LdLs~N~Lt~LP 383 (754)
T PRK15370 372 LDVSRNALTNLP 383 (754)
T ss_pred EECCCCcCCCCC
Confidence 666666655444
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-19 Score=170.09 Aligned_cols=267 Identities=22% Similarity=0.242 Sum_probs=130.8
Q ss_pred CCCCCcEEEcccccccc----CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc
Q 047549 120 NFSKLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP 195 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~ 195 (479)
.+..|+.++++++.++. .++..+...+.+++++++++.+.+ .+..+..+. ..+..+++|++|++++|.+....+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHH-HHHHhcCceeEEEccCCCCChhHH
Confidence 34445555555555432 123333444555555555554431 011110000 013345566666666666654444
Q ss_pred hhhhcCCC---CCeeeccCCcCccc----cCccccCCC-CCCcEEEccCCccccc----CCccCcCCCCCCEEEccCCcc
Q 047549 196 QFLMNCTN---LITLNLRINNFRGD----LSAYNFSTL-HNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSGNKI 263 (479)
Q Consensus 196 ~~l~~l~~---L~~L~l~~n~l~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l 263 (479)
..+..+.+ |+.|++++|.+.+. +. ..+..+ ++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~-~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLA-KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHH-HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 44444443 66666666655411 11 123344 5666666666666521 233344556677777777766
Q ss_pred ccc----ChhhhhccCCCCEEEccCCCCCCCCC--ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEE
Q 047549 264 EEQ----ISPTILALVSVSYLSINNNNLSNITG--AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337 (479)
Q Consensus 264 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~ 337 (479)
++. .+..+..+++|+.|++++|.+++... ....+..+++|++|++++|.+.+.........+. ...+.|++|+
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~ 256 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL-SPNISLLTLS 256 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh-ccCCCceEEE
Confidence 532 12233444567777777766653211 1123445566666666666554311111100000 0125677777
Q ss_pred eeCCccee----cCchhhcCCCCCCEEeCCCCccccc----cCcccCCC-CCCcEEEccCCc
Q 047549 338 IGNCEIKG----QIPTWLGKLKKLQVLDLGSNQITGP----IPGWLGNM-PNLFYIDLSYNS 390 (479)
Q Consensus 338 l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l-~~L~~L~L~~N~ 390 (479)
+++|.+++ .+...+..+++|+.+++++|.+.+. ....+... +.|+++++.+|.
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 77776652 1233445556677777777776633 22333334 566667666654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-19 Score=167.55 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=41.2
Q ss_pred EEccccccc-cCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcc------ccchhhh
Q 047549 127 FRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG------FLPQFLM 199 (479)
Q Consensus 127 L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~------~~~~~l~ 199 (479)
|+|+.+.++ ......+..+.+|++++++++.++......+... +...+.+++++++++.+.+ .++..+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~----l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA----LRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH----HhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 455555554 2333334455566777776666543211111110 2334556666666655541 1223344
Q ss_pred cCCCCCeeeccCCcCc
Q 047549 200 NCTNLITLNLRINNFR 215 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~ 215 (479)
.+++|+.|++++|.+.
T Consensus 79 ~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 79 KGCGLQELDLSDNALG 94 (319)
T ss_pred hcCceeEEEccCCCCC
Confidence 4556666666655554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-18 Score=138.27 Aligned_cols=159 Identities=27% Similarity=0.484 Sum_probs=99.9
Q ss_pred CCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEE
Q 047549 75 LTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDI 151 (479)
Q Consensus 75 l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 151 (479)
+.+++.|.+++|.++.++|.. .+|+.|++++|++. .+|..++.+++|++|+++.|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444444444444444433 44444555555554 56667777777777777777776 667777777777777
Q ss_pred ECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 152 SLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 152 ~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
++.+|.+... .|.. |-.|..|+.|++++|.+. .+|..++++++|+.|.++.|.+. .+|. .++.+..|+
T Consensus 108 dltynnl~e~~lpgn--------ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpk-eig~lt~lr 176 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGN--------FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPK-EIGDLTRLR 176 (264)
T ss_pred hccccccccccCCcc--------hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcH-HHHHHHHHH
Confidence 7777766543 3332 334566777777777776 56666777777777777777765 5564 566677777
Q ss_pred EEEccCCcccccCCccCcC
Q 047549 231 TIDLGNNNFTGSFPLTLTS 249 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~ 249 (479)
+|.+.+|+++ .+|..++.
T Consensus 177 elhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHhcccceee-ecChhhhh
Confidence 7777777776 55544443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-18 Score=136.34 Aligned_cols=156 Identities=30% Similarity=0.432 Sum_probs=139.7
Q ss_pred CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 50 SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 50 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++.|.+++|.++ .+|+.++.+.+|+.|++.+|++...++.. ++|+.|++.-|.+. .+|..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~---~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN---ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh---cCccccCCCchhhh
Confidence 3568999999999997 67899999999999999999999988765 89999999999998 79999999999999
Q ss_pred EEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 127 FRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 127 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
||+.+|++.. .+|..|..+..|+.|++++|.+....|+ ++++++|+.|.+.+|.+- .+|..++.+++|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d---------vg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD---------VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh---------hhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999999864 7888899999999999999998855443 677899999999999887 5899999999999
Q ss_pred eeeccCCcCccccCc
Q 047549 206 TLNLRINNFRGDLSA 220 (479)
Q Consensus 206 ~L~l~~n~l~~~~~~ 220 (479)
+|.+.+|.++ .+|.
T Consensus 177 elhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPP 190 (264)
T ss_pred HHhcccceee-ecCh
Confidence 9999999998 5654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=138.89 Aligned_cols=130 Identities=31% Similarity=0.500 Sum_probs=87.9
Q ss_pred ccccChhhHHHHHHhHhcCCCCC-CCCCCCCCCc-----cceeEEeCCC-----CCEEEEECCCCCccccccccccCCCC
Q 047549 9 DQACNQIDQETLLSLNFNASNPP-LNWSFSTDCC-----LWEGIKCDSE-----AQVTHLWLPDRGLRGSIYPFTGKLTH 77 (479)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~-~~w~~~~~~c-----~w~~v~c~~~-----~~l~~L~l~~~~l~~~~~~~l~~l~~ 77 (479)
..+..++|..+|..+|+.+..+. .+|. + |+| .|.||.|... ..++.|+|+++.+.|.+|+.++.+++
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~-g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWN-G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCC-C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 33456778999999999987654 4896 4 344 6999999521 25999999999999999999999999
Q ss_pred CCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccC
Q 047549 78 LCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDV 142 (479)
Q Consensus 78 L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 142 (479)
|+.|+|++|.+.+..|.. ++|++|++++|.+++ .+|..++++++|++|++++|.+.+.+|..+
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 999999999887644321 444444444444443 344444444444444444444444444443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-13 Score=121.38 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCCCCEEEccCCcCccccchh----hhcCCCCCeeeccCCcCccccCcc-------------ccCCCCCCcEEEccCCc
Q 047549 176 KLANLKSLKLHTNSLSGFLPQF----LMNCTNLITLNLRINNFRGDLSAY-------------NFSTLHNLHTIDLGNNN 238 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~l~~L~~L~l~~n~ 238 (479)
.+++|++++||+|.+....+.. +..+..|+.|+|.+|.+. ..... -...-+.|+++...+|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4456666666666554332222 344566666666666553 11110 12334566666666666
Q ss_pred cccc----CCccCcCCCCCCEEEccCCccccc----ChhhhhccCCCCEEEccCCCCC
Q 047549 239 FTGS----FPLTLTSCMFLTAIRLSGNKIEEQ----ISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 239 l~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+... +...+...+.|+.+.++.|.|... ....+..+++|+.|||..|.++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 5421 223344455666666666655432 1234455566666666666554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-13 Score=126.91 Aligned_cols=194 Identities=26% Similarity=0.372 Sum_probs=146.4
Q ss_pred cCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCC
Q 047549 73 GKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLE 149 (479)
Q Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 149 (479)
..+..-...|++.|++..++..+ .+|+.+.+.+|.+. .+|..+.++..|..++++.|+++ .+|..++.++ |+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r---~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR---TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce---ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 34555677888999888877655 67888899999888 78888999999999999999988 7787777664 78
Q ss_pred EEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCC
Q 047549 150 DISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL 229 (479)
Q Consensus 150 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 229 (479)
.|.+++|+++ .+|+. ++..+.|..|+.+.|.+. .+|..++++.+|+.|.++.|++. .+|. .+.. =.|
T Consensus 147 vli~sNNkl~-~lp~~--------ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~~-LpL 213 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEE--------IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELCS-LPL 213 (722)
T ss_pred eEEEecCccc-cCCcc--------cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHhC-Cce
Confidence 8888888887 44544 345678888888888887 46777888888888888888886 6665 3443 347
Q ss_pred cEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhc---cCCCCEEEccCCC
Q 047549 230 HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA---LVSVSYLSINNNN 286 (479)
Q Consensus 230 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~ 286 (479)
..||++.|++. .+|..|.+|+.|++|.|.+|.++. .|..++. ..=.++|+..-++
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 78888888888 788888888889999998888876 3333322 1223566666553
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-13 Score=125.13 Aligned_cols=174 Identities=26% Similarity=0.482 Sum_probs=118.5
Q ss_pred CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcE
Q 047549 226 LHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRM 305 (479)
Q Consensus 226 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~ 305 (479)
+..-...+++.|++. .+|..+..+..|+.+.++.|.+.. +|..++++..|.+++|+.|++...|..+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS~lp~~lC---------- 141 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLSHLPDGLC---------- 141 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhhcCChhhh----------
Confidence 444455677777776 677777777777777777777765 66777777778888888877776553211
Q ss_pred EEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEE
Q 047549 306 LLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYID 385 (479)
Q Consensus 306 L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 385 (479)
.+ -|+.|-+++|+++ .+|+.++...+|..||.+.|.+. .+|..+..+.+|+.|+
T Consensus 142 -----------------------~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 142 -----------------------DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred -----------------------cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 11 2666777777776 56666677777777777777776 5666677777777777
Q ss_pred ccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcc
Q 047549 386 LSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNV 465 (479)
Q Consensus 386 L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~ 465 (479)
++.|++. .+|+..+.++-. .||+|.|+++ .+|..|.+|
T Consensus 196 vrRn~l~-~lp~El~~LpLi----------------------------------------~lDfScNkis-~iPv~fr~m 233 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSLPLI----------------------------------------RLDFSCNKIS-YLPVDFRKM 233 (722)
T ss_pred Hhhhhhh-hCCHHHhCCcee----------------------------------------eeecccCcee-ecchhhhhh
Confidence 7777777 555555433322 2677777777 777777777
Q ss_pred cccCeeeCCCCCCC
Q 047549 466 MFLHVLDLSLNNFS 479 (479)
Q Consensus 466 ~~L~~L~ls~N~l~ 479 (479)
+.|++|-|.+|.|+
T Consensus 234 ~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQ 247 (722)
T ss_pred hhheeeeeccCCCC
Confidence 77777777777763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-12 Score=115.20 Aligned_cols=218 Identities=20% Similarity=0.174 Sum_probs=127.0
Q ss_pred CCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc--cchhhhcCCCCCeeeccCCcCccccCc
Q 047549 143 SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF--LPQFLMNCTNLITLNLRINNFRGDLSA 220 (479)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~ 220 (479)
+++.+|+++.+.++.+.....+. ....+++++.|+|++|-++.. +......+|+|+.|+++.|.+......
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~-------~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEE-------YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCccccccchhh-------hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 45666777777666554322211 134567777777777766543 334456678888888888877532222
Q ss_pred cccCCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccC
Q 047549 221 YNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMG 299 (479)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 299 (479)
..-..+++|+.|.++.|.++.. +...+..+|+|+.|++.+|............+..|+.|||++|.+.+++ .....+.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~ 269 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-QGYKVGT 269 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-ccccccc
Confidence 2223567777888887777531 2223455677788888877533323333445667778888888776554 2344566
Q ss_pred CCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec-CchhhcCCCCCCEEeCCCCccc
Q 047549 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ-IPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 300 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
++.|+.|+++.+.+...-............+++|++|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 67777777777665543221111111123567788888888877521 1123445566677776666665
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-12 Score=116.74 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=93.6
Q ss_pred CCCCCCCcEEEcccccccc--CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc-c
Q 047549 118 LGNFSKLQTFRAGFSYLSG--SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF-L 194 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~ 194 (479)
...|++++.||++.|-+.. .+......+++|+.|+++.|++........ -..+++|+.|.++.|.++.. +
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-------~~~l~~lK~L~l~~CGls~k~V 214 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-------TLLLSHLKQLVLNSCGLSWKDV 214 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-------hhhhhhhheEEeccCCCCHHHH
Confidence 3345555555555554331 111122345555555555555442211111 11345556666666655522 2
Q ss_pred chhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccC-CccCcCCCCCCEEEccCCcccccC-hhh--
Q 047549 195 PQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF-PLTLTSCMFLTAIRLSGNKIEEQI-SPT-- 270 (479)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~-~~~-- 270 (479)
...+..+|+|+.|++..|... .+.......+..|++|+|++|.+...- -.....++.|..|+++.+.+..+- |+.
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s 293 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES 293 (505)
T ss_pred HHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc
Confidence 223345566666666666321 111122334455666666666554221 123455566666666666554432 111
Q ss_pred ---hhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCC
Q 047549 271 ---ILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP 318 (479)
Q Consensus 271 ---~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (479)
...+++|++|++..|++..++. ...+..+++|+.|.+..|.++..-.
T Consensus 294 ~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hhhhcccccceeeecccCccccccc-cchhhccchhhhhhccccccccccc
Confidence 2345667777777777755432 2344455666666666666654433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-10 Score=114.82 Aligned_cols=178 Identities=30% Similarity=0.447 Sum_probs=80.4
Q ss_pred CCCcEEEccccccccCCCccCCCCC-CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAA-SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
+.++.|++.++.++ .++....... +|++|++++|.+.... . .+..+++|+.|++++|+++. ++.....
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~-~--------~~~~l~~L~~L~l~~N~l~~-l~~~~~~ 184 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP-S--------PLRNLPNLKNLDLSFNDLSD-LPKLLSN 184 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchhhhh-h--------hhhccccccccccCCchhhh-hhhhhhh
Confidence 44444444444444 3333333332 4444444444444221 0 02334455555555555442 2332334
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
.+.|+.|++++|++. .++. .......|+++.+++|++. ..+..+..+.++..+.+.+|++.. .+..++.++++++|
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L 260 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETL 260 (394)
T ss_pred hhhhhheeccCCccc-cCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhcccccccee
Confidence 445555555555554 3332 1122333555555555322 233344444555555555554433 13444455555555
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCC
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP 318 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (479)
++++|.++.++. +....+++.|+++++.+....+
T Consensus 261 ~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 261 DLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccccccccc----ccccCccCEEeccCccccccch
Confidence 555555554432 4445555555555555554443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-10 Score=112.97 Aligned_cols=193 Identities=27% Similarity=0.386 Sum_probs=122.2
Q ss_pred eeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCC-CCcEEEccccccccCCCccCCCCCCCCEEECCC
Q 047549 80 HLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFS-KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 80 ~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
.+++..+++....... +.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~---~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT---DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc---cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4666666653322221 45777777777777 5666666663 7777777777776 5555667777777777777
Q ss_pred CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEcc
Q 047549 156 NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 156 n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (479)
|++....+. .+..+.|+.|++++|+++ .+|........|+++.+++|.+. ..+. .+..+.++..+.+.
T Consensus 173 N~l~~l~~~---------~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~ 240 (394)
T COG4886 173 NDLSDLPKL---------LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELS 240 (394)
T ss_pred chhhhhhhh---------hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccC
Confidence 777644332 114567777777777777 34554445556777777777433 2221 45666677777777
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCC
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 291 (479)
+|++. ..+..+..++++++|++++|.++...+ +....+++.+++++|.+....
T Consensus 241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 241 NNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred Cceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 77665 335556666777777777777766443 666777777777777766443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-11 Score=107.62 Aligned_cols=135 Identities=20% Similarity=0.228 Sum_probs=104.5
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..++.|+++|+++|.|+ .+.++..-.|+++.|++++|.+. .+. .+..+++|+.||+++|.++ .+..+-..+-+++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34577889999999888 56777777899999999999887 444 4777899999999999887 4444445677889
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccC
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (479)
+|.+++|.+.. ...+..+-+|..||+.+|++..+.. ...++++|.|+++.+.+|.+.+..
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence 99999998854 2457778889999999999886643 356778888888888887776543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.7e-12 Score=112.76 Aligned_cols=242 Identities=19% Similarity=0.263 Sum_probs=160.1
Q ss_pred CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC---cCccccc-------hhhhcCCCCCeeeccCCcC
Q 047549 145 AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN---SLSGFLP-------QFLMNCTNLITLNLRINNF 214 (479)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n---~l~~~~~-------~~l~~l~~L~~L~l~~n~l 214 (479)
...++.+++++|.+.......+++. +...++|+..++++- .....+| ..+-.+++|+++++|+|.+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~----L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKV----LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHH----HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4455566666665543333222221 333445555555532 1111233 3455778999999999988
Q ss_pred ccccCc---cccCCCCCCcEEEccCCccccc-------------CCccCcCCCCCCEEEccCCcccccC----hhhhhcc
Q 047549 215 RGDLSA---YNFSTLHNLHTIDLGNNNFTGS-------------FPLTLTSCMFLTAIRLSGNKIEEQI----SPTILAL 274 (479)
Q Consensus 215 ~~~~~~---~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l 274 (479)
....+. ..+..+..|++|++.+|.+.-. ...-....+.|+.+....|++.... ...|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 632221 2356789999999999987421 1122345678999999999986543 3456667
Q ss_pred CCCCEEEccCCCCCC--CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc----
Q 047549 275 VSVSYLSINNNNLSN--ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP---- 348 (479)
Q Consensus 275 ~~L~~L~L~~n~l~~--~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---- 348 (479)
+.|+.+.++.|.+.. +......+..|++|+.|++..|-++......... ....+++|+.+++++|.+...-.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak--aL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK--ALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH--HhcccchheeecccccccccccHHHHH
Confidence 899999999998863 2223367889999999999999887543322221 12356789999999998875432
Q ss_pred hhh-cCCCCCCEEeCCCCccccc----cCcccCCCCCCcEEEccCCccc
Q 047549 349 TWL-GKLKKLQVLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 349 ~~l-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
..+ ...+.|+.+.+.+|.|+.. +..++...+.|..|+|++|++.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 233 3468999999999998732 3345566889999999999994
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-10 Score=95.94 Aligned_cols=107 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred CCCCCcEEEccccccccCCCccCC-CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVS-AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFL 198 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l 198 (479)
+..++++|++++|.|+ .+. .+. .+.+|+.|++++|.++.... +..++.|++|++++|.++.. ...+
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~----------l~~L~~L~~L~L~~N~I~~i-~~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEG----------LPGLPRLKTLDLSNNRISSI-SEGL 83 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT--------------TT--EEE--SS---S--CHHH
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccC----------ccChhhhhhcccCCCCCCcc-ccch
Confidence 4445667777777666 332 343 45666677777666653211 34456666666666666643 2223
Q ss_pred -hcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCccc
Q 047549 199 -MNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 199 -~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~ 240 (479)
..+++|+.|++++|++. .+.. ..+..+++|++|++.+|+++
T Consensus 84 ~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence 34666666666666665 2211 12334444444444444443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-10 Score=115.09 Aligned_cols=80 Identities=36% Similarity=0.596 Sum_probs=65.4
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+.++++|+.++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888764433
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-10 Score=95.19 Aligned_cols=105 Identities=30% Similarity=0.339 Sum_probs=27.8
Q ss_pred CCCeeeccCCcCccccCccccC-CCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFS-TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLS 281 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 281 (479)
++++|++++|.++ .+. .++ .+.+|+.|++++|.++. +. .+..++.|++|++++|.++...+.....+++|+.|.
T Consensus 20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4555555555554 332 222 34556666666666552 22 345556666666666666553322223466666666
Q ss_pred ccCCCCCCCCCccccccCCCCCcEEEccCccc
Q 047549 282 INNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 282 L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (479)
+++|++.++.. +..+..+++|+.|++.+|.+
T Consensus 95 L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNE-LEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCC-CGGGGG-TT--EEE-TT-GG
T ss_pred CcCCcCCChHH-hHHHHcCCCcceeeccCCcc
Confidence 66666665532 23444455555555544444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-11 Score=103.88 Aligned_cols=217 Identities=20% Similarity=0.159 Sum_probs=127.3
Q ss_pred CEEEEECCCCC--------ccccccccccCCCCCCeeecCCCc---CCCcCCCCCCCCEEEcCCcccccCC-CCCCcCCC
Q 047549 53 QVTHLWLPDRG--------LRGSIYPFTGKLTHLCHLNLSHNH---LSFLSPSVPFLSILDFSHNYFRGHC-QLPSGLGN 120 (479)
Q Consensus 53 ~l~~L~l~~~~--------l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~~~L~~L~L~~n~l~~~~-~l~~~~~~ 120 (479)
+++.|.+++.. +...+|-.+..+++|+.+.++++. |.++...-|.|.++...+..+.... -+|.
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe---- 258 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPE---- 258 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccch----
Confidence 56677665532 123345566778899999998874 4444444478888888776554211 1111
Q ss_pred CCCCcEEEcccc---ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 121 FSKLQTFRAGFS---YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 121 l~~L~~L~l~~n---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
.. ..|..+. -.+|..-..+.....|+++++++|.++... ++ ..-.|+++.|++++|.++.. ..
T Consensus 259 -~~--~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-ES--------vKL~Pkir~L~lS~N~i~~v--~n 324 (490)
T KOG1259|consen 259 -TI--LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-ES--------VKLAPKLRRLILSQNRIRTV--QN 324 (490)
T ss_pred -hh--hcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-hh--------hhhccceeEEeccccceeee--hh
Confidence 11 1111111 111122222223345677777777666322 22 23357777777777777632 33
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccC-hhhhhccCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQI-SPTILALVS 276 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~ 276 (479)
+..+++|+.|++++|.++ .+.. .-..+.++++|.+++|.+... ..+..+-+|..||+++|.|.... ...+++++.
T Consensus 325 La~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred hhhcccceEeecccchhH-hhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 666777788888877776 3332 334567777788887777522 23555667778888888776532 245677788
Q ss_pred CCEEEccCCCCCCCC
Q 047549 277 VSYLSINNNNLSNIT 291 (479)
Q Consensus 277 L~~L~L~~n~l~~~~ 291 (479)
|+.+.+.+|.+..++
T Consensus 401 LE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 401 LETLRLTGNPLAGSV 415 (490)
T ss_pred HHHHhhcCCCccccc
Confidence 888888888777554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-09 Score=74.94 Aligned_cols=61 Identities=36% Similarity=0.559 Sum_probs=50.9
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 391 (479)
++|++|++++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888866667888888888888888888877778888888888888888875
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-09 Score=107.90 Aligned_cols=196 Identities=30% Similarity=0.333 Sum_probs=89.5
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+..++.+.+..|.+.. .-..+..+.+++.+++.+|.+. .+.. .+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hccc-chhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444455555555552 2223445556666666666655 2321 1445566666666666655332 23444456666
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
++++|.++.. ..+..+..|+.+++++|.++.+... . ...+..++.+.+.+|.+....... ....+..+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~--------~~~~l~~~ 213 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLD--------LLKKLVLL 213 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccchH--------HHHHHHHh
Confidence 6666655442 2233355555666666655544321 0 234445555555554433221110 11223333
Q ss_pred EeeCCcceecCchhhcCCCC--CCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKK--LQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++..|.++..- .+..+.. |+.+++++|++. ..+..+..+..+..|++..|++.
T Consensus 214 ~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 44444444211 1122222 455555555554 22233444455555555555544
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-09 Score=106.28 Aligned_cols=246 Identities=25% Similarity=0.296 Sum_probs=141.6
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.+..++.+.++.|.+. .+-..+..+.+|+.+++.+|.+...... +..+++|++|++++|.|+.. ..+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~---------l~~~~~L~~L~ls~N~I~~i--~~l~ 137 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENL---------LSSLVNLQVLDLSFNKITKL--EGLS 137 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccc---------hhhhhcchheeccccccccc--cchh
Confidence 4566666777777776 3334466777888888888877643321 34467778888888877743 2345
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCcc-CcCCCCCCEEEccCCcccccChhhhhccCCCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 278 (479)
.++.|+.|++.+|.+. .+. .+..++.|+.+++++|.++..-+ . ...+.+++.+.+.+|.+... ..+..+..+.
T Consensus 138 ~l~~L~~L~l~~N~i~-~~~--~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~ 211 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLIS-DIS--GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLV 211 (414)
T ss_pred hccchhhheeccCcch-hcc--CCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHH
Confidence 5666777778777776 343 34457777777777777763322 1 45667777777777776543 2233344444
Q ss_pred EEEccCCCCCCCCCccccccCCC--CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCK--NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKK 356 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 356 (479)
.+++..|.++.+.+. .... .|+.+++++|++.... ... ..+..+..+++.+|++... ..+.....
T Consensus 212 ~~~l~~n~i~~~~~l----~~~~~~~L~~l~l~~n~i~~~~-~~~------~~~~~l~~l~~~~n~~~~~--~~~~~~~~ 278 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGL----NELVMLHLRELYLSGNRISRSP-EGL------ENLKNLPVLDLSSNRISNL--EGLERLPK 278 (414)
T ss_pred HhhcccccceeccCc----ccchhHHHHHHhcccCcccccc-ccc------cccccccccchhhcccccc--ccccccch
Confidence 556666666644331 1222 2666666666654321 000 1345566666666666521 22344455
Q ss_pred CCEEeCCCCccccc---cCcc-cCCCCCCcEEEccCCcccccCC
Q 047549 357 LQVLDLGSNQITGP---IPGW-LGNMPNLFYIDLSYNSISGEFP 396 (479)
Q Consensus 357 L~~L~Ls~n~l~~~---~~~~-~~~l~~L~~L~L~~N~l~~~~p 396 (479)
+..+....|.+... .... ....+.+..+.+..|.+....+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred HHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 55566666655421 1111 3445666667777666664443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-08 Score=69.76 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=26.1
Q ss_pred CCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
+|++|++++|+++...+..|..+++|++|++++|.++.+.+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333344444444444444444444444444444444444444443
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-08 Score=104.08 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=37.7
Q ss_pred CCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcc
Q 047549 142 VSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAY 221 (479)
Q Consensus 142 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (479)
|..++.|++||+++|.-.+..|..+ +.+-+|++|+++++.+. .+|..+.++..|.+|++..+.....++ .
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I--------~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~ 636 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSI--------GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-G 636 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHH--------hhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-c
Confidence 3445555555555544333444432 22344455555555544 344555555555555554443321221 1
Q ss_pred ccCCCCCCcEEEccC
Q 047549 222 NFSTLHNLHTIDLGN 236 (479)
Q Consensus 222 ~~~~l~~L~~L~l~~ 236 (479)
....+.+|++|.+..
T Consensus 637 i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhcccccEEEeec
Confidence 223344555554433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-08 Score=106.78 Aligned_cols=125 Identities=18% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCCCeeecCCCcCCCcCCCC--CCCCEEEcCCcc--cccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 76 THLCHLNLSHNHLSFLSPSV--PFLSILDFSHNY--FRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~--~~L~~L~L~~n~--l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
...|.+.+-+|.+....... +.|++|-+..|. +. .++. .|..++.|++||+++|.--+.+|..++++-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~---~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL---EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhh---hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 44555555555544333222 456666666654 22 2222 3455666666666665544466666666666666
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
|++++..+. .+|.+ +++++.|.+|++..+.....++.....+++|++|.+...
T Consensus 600 L~L~~t~I~-~LP~~--------l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSG--------LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchH--------HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 666666555 33443 334556666666655443334555555666666665443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-09 Score=92.63 Aligned_cols=109 Identities=21% Similarity=0.182 Sum_probs=56.6
Q ss_pred CCCCCCeeecCCCcCCCcCCC------CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCC
Q 047549 74 KLTHLCHLNLSHNHLSFLSPS------VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAAS 147 (479)
Q Consensus 74 ~l~~L~~L~L~~n~l~~~~~~------~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 147 (479)
...-++.|.+.++.|...... ...++.+||.+|.++....+...+.++|.|++|+++.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 333444555555544432211 15566666666666544444455567777777777777766332211134556
Q ss_pred CCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCc
Q 047549 148 LEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189 (479)
Q Consensus 148 L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~ 189 (479)
|++|.+.+..+......++ +..+|.+++|+++.|+
T Consensus 123 l~~lVLNgT~L~w~~~~s~-------l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSS-------LDDLPKVTELHMSDNS 157 (418)
T ss_pred eEEEEEcCCCCChhhhhhh-------hhcchhhhhhhhccch
Confidence 6666666655543322221 3345555555555553
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-09 Score=90.56 Aligned_cols=168 Identities=18% Similarity=0.156 Sum_probs=90.9
Q ss_pred CCCCCCCCEEEccCCcCccccchhh----hcCCCCCeeeccCCcCccccCccc-------------cCCCCCCcEEEccC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFL----MNCTNLITLNLRINNFRGDLSAYN-------------FSTLHNLHTIDLGN 236 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~-------------~~~l~~L~~L~l~~ 236 (479)
+.+||+|+..+|++|.+....|..+ +.-+.|..|.+++|.+. .+.... ..+-|.|+++...+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3456666666666666654444333 34556667777766653 222111 13456788888888
Q ss_pred CcccccCCc-----cCcCCCCCCEEEccCCcccccC-----hhhhhccCCCCEEEccCCCCCCCCCcc--ccccCCCCCc
Q 047549 237 NNFTGSFPL-----TLTSCMFLTAIRLSGNKIEEQI-----SPTILALVSVSYLSINNNNLSNITGAI--GILMGCKNLR 304 (479)
Q Consensus 237 n~l~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~l~~~~~L~ 304 (479)
|++.. .+. .+..-..|+.+.+.+|.|.... ...+..+.+|+.||++.|.++.-...+ .+++.++.|+
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 87752 221 1222257888888888775431 122345678888888888776332211 3445556666
Q ss_pred EEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 305 MLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 305 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.|.+..|.+.........-.+.....++|..|...+|.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 666666655443322222122222344555555555544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-09 Score=96.43 Aligned_cols=128 Identities=20% Similarity=0.178 Sum_probs=73.7
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC--------CCCCEEEcCCcccccCCCCCCcCCCCCCC
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV--------PFLSILDFSHNYFRGHCQLPSGLGNFSKL 124 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~L~~L~L~~n~l~~~~~l~~~~~~l~~L 124 (479)
.=+.+|+.+-++. |..++.+..=..+.++.-+..-..|.+ ..|++|||++..++.. .+-..++.|.+|
T Consensus 137 lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~s-tl~~iLs~C~kL 212 (419)
T KOG2120|consen 137 LWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVS-TLHGILSQCSKL 212 (419)
T ss_pred ceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHH-HHHHHHHHHHhh
Confidence 3577888776654 445555444333333332222112211 4688888888877531 233345677888
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCC-cccccCCccccccCCCCCCCCCCCCEEEccCCcCc
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVN-QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~ 191 (479)
+.|.+.++.+.+.+...+++..+|+.++++.+ .++. .++. +-+..++.|..|+++.|.+.
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~---n~~~----ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE---NALQ----LLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeeccccccccch---hHHH----HHHHhhhhHhhcCchHhhcc
Confidence 88888888887777777777778888887765 2221 1110 01345566666666666544
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-09 Score=102.43 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
.|.+.+.++|.+. .+..++.-++.|++|+|+.|++... +.+..+++|++||+++|.+.-..--+ -..
T Consensus 165 ~L~~a~fsyN~L~---~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~--------~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLV---LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLS--------MVG 231 (1096)
T ss_pred hHhhhhcchhhHH---hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccc--------hhh
Confidence 4566666666665 3444555566666777777766532 25566666777777766655221111 122
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcc
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 239 (479)
+. |+.|.+++|.++. -..+.++.+|+.||+++|-+.+.-.-..+..+..|+.|+|.||++
T Consensus 232 c~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 232 CK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 22 6666666666652 234556666666666666554321111233445566666666665
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-08 Score=90.45 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=37.7
Q ss_pred CCccEEEeeCCcce--ec-CchhhcCCCCCCEEeCCCCccc-cccCcccCCCCCCcEEEccCCcccccCCcc---ccCCc
Q 047549 331 QNLVVLGIGNCEIK--GQ-IPTWLGKLKKLQVLDLGSNQIT-GPIPGWLGNMPNLFYIDLSYNSISGEFPKE---FCGLP 403 (479)
Q Consensus 331 ~~L~~L~l~~n~l~--~~-~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~ 403 (479)
++|..|+++|+.-. .. +..-...+++|..|||++|... ...-..|-+++.|++|.++.|- +++|+. +...+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCc
Confidence 45555555554321 11 1112234566666666655432 2222234455566666665542 233332 34455
Q ss_pred ccccccccccc
Q 047549 404 ALALQEAKNRA 414 (479)
Q Consensus 404 ~L~~l~~~~~~ 414 (479)
+|.+|+..+..
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 56655554443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-07 Score=83.11 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=43.1
Q ss_pred CCCCCEEEccCCcCccc--cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc-CCccCcCCCCC
Q 047549 177 LANLKSLKLHTNSLSGF--LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCMFL 253 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L 253 (479)
.+.+++++|.+|.++.. +...+.++|.|+.|+++.|++...+.... ....+|++|-+.+..+... ....+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44566666666666532 33334566666666666666654333211 2445666666665544321 12223444555
Q ss_pred CEEEccCC
Q 047549 254 TAIRLSGN 261 (479)
Q Consensus 254 ~~L~l~~n 261 (479)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555555
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.6e-08 Score=97.13 Aligned_cols=205 Identities=20% Similarity=0.177 Sum_probs=106.8
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCC-CCCCEEECCCC--cccccCCccccccCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAA-ASLEDISLPVN--QLSGAISNGVVNLTSL 172 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n--~l~~~~~~~~~~l~~l 172 (479)
++++.|.+-+-.-.+- .-|-.+..+..|++|.++++.+.. ...+..+ .+|++|.-.+. .+...+....+.+..
T Consensus 84 qkt~~lkl~~~pa~~p-t~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~n- 159 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDP-TEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISN- 159 (1096)
T ss_pred hhheeeeecccCCCCC-CCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccccc-
Confidence 4555555555443321 225567778899999999988762 1112111 23444432211 000001111111000
Q ss_pred CCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCC
Q 047549 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252 (479)
Q Consensus 173 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 252 (479)
-.....|...+.+.|.++ .+..++.-++.++.|+++.|+++ ... .+..+++|++|||+.|.++ .+|..-..-..
T Consensus 160 -s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 160 -SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK 233 (1096)
T ss_pred -chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhc-cccccchhhhh
Confidence 001234455555666665 44555666677777777777766 333 4566677777777777766 44432111123
Q ss_pred CCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccc
Q 047549 253 LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 253 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (479)
|+.|.+++|.++.. ..+.++.+|+-||+++|-+.+... ...+..+..|+.|++.+|.+
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcc
Confidence 77777777766543 335566677777777776654322 23344555666666666654
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-06 Score=53.69 Aligned_cols=36 Identities=36% Similarity=0.855 Sum_probs=27.3
Q ss_pred hhhHHHHHHhHhcCCCCC----CCCCCC--CCCccceeEEeC
Q 047549 14 QIDQETLLSLNFNASNPP----LNWSFS--TDCCLWEGIKCD 49 (479)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~----~~w~~~--~~~c~w~~v~c~ 49 (479)
++|+++|++||.++..++ .+|..+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 578999999999999532 899986 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-07 Score=78.60 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=91.5
Q ss_pred CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCc---cc-------cchhhhcCCCCCeeeccCCcC
Q 047549 145 AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS---GF-------LPQFLMNCTNLITLNLRINNF 214 (479)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~---~~-------~~~~l~~l~~L~~L~l~~n~l 214 (479)
+..+..+++|+|.+.......+++. +.+-.+|+..++++-... .. +..++.+||+|+..+++.|.+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~----ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNV----IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHH----HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4556666666666554443333332 334455666555543211 11 234556789999999999988
Q ss_pred ccccCc---cccCCCCCCcEEEccCCccccc----CCc---------cCcCCCCCCEEEccCCcccccChhh----hhcc
Q 047549 215 RGDLSA---YNFSTLHNLHTIDLGNNNFTGS----FPL---------TLTSCMFLTAIRLSGNKIEEQISPT----ILAL 274 (479)
Q Consensus 215 ~~~~~~---~~~~~l~~L~~L~l~~n~l~~~----~~~---------~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l 274 (479)
....+. ..++....|.+|.+.+|.+--. +.. -...-|.|+.+....|++....... +..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 644443 2356678889999988876311 111 1234467888888887775432221 2222
Q ss_pred CCCCEEEccCCCCCCCCCc---cccccCCCCCcEEEccCcccc
Q 047549 275 VSVSYLSINNNNLSNITGA---IGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 275 ~~L~~L~L~~n~l~~~~~~---~~~l~~~~~L~~L~l~~n~~~ 314 (479)
.+|+.+.+..|.|..-.-. ...+..+.+|+.|++..|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 4677777777777621000 012334455555555555444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.2e-07 Score=69.94 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=48.8
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
.|...++++|.+....+......+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 4555666666666333332334456667777777776 45555667777777777777776 556665556666665555
Q ss_pred ccc
Q 047549 412 NRA 414 (479)
Q Consensus 412 ~~~ 414 (479)
++.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.7e-06 Score=51.49 Aligned_cols=36 Identities=53% Similarity=0.706 Sum_probs=18.5
Q ss_pred CCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 356 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555555
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-07 Score=71.46 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=55.5
Q ss_pred ccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCc
Q 047549 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
.++.++.|++++|.+. .+|..+..++.|+.++++.|.+. ..|..+..+.++-+|+..+|.+. .+|.
T Consensus 75 kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 75 KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 4567888999999998 67878999999999999999998 67777777899999999999887 4443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.1e-05 Score=49.71 Aligned_cols=38 Identities=34% Similarity=0.558 Sum_probs=31.7
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
++|++|++++|+++ .+|..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 46899999999999 566679999999999999999984
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.5e-05 Score=62.92 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=28.3
Q ss_pred CcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcc
Q 047549 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF 312 (479)
Q Consensus 247 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~ 312 (479)
|..++.|.+|.+..|.|+.+.|..-..+++|..|.+.+|.+..+.+ +..+..||+|++|.+-+|.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCccceeeecCCc
Confidence 3334444444444444444433333334444555555544443321 2334444455555444443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=62.92 Aligned_cols=103 Identities=24% Similarity=0.266 Sum_probs=60.8
Q ss_pred CCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc--cccCcccc
Q 047549 146 ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR--GDLSAYNF 223 (479)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~ 223 (479)
.+...+++++|.+.... .|..++.|.+|.+.+|.|+.+-|.--.-+++|..|.+.+|.+. |++. .+
T Consensus 42 d~~d~iDLtdNdl~~l~----------~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pL 109 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD----------NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--PL 109 (233)
T ss_pred cccceecccccchhhcc----------cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc--hh
Confidence 45566777777655221 1455677777777777777655554455667777777777765 2222 34
Q ss_pred CCCCCCcEEEccCCcccccC---CccCcCCCCCCEEEccC
Q 047549 224 STLHNLHTIDLGNNNFTGSF---PLTLTSCMFLTAIRLSG 260 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~ 260 (479)
..+|+|++|.+-+|+++..- ...+..+++|+.||+++
T Consensus 110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 55667777777777665321 11234455666666554
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.2e-05 Score=81.13 Aligned_cols=139 Identities=21% Similarity=0.239 Sum_probs=84.4
Q ss_pred CCCcEEEcccccc-ccCCCccCC-CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 122 SKLQTFRAGFSYL-SGSIPDDVS-AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 122 ~~L~~L~l~~n~~-~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.+|++|++++... ....+..++ .+|.|+.|.+++-.+.... +..+ ...+|+|..||+++++++.. ..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~l----c~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQL----CASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHH----hhccCccceeecCCCCccCc--HHHh
Confidence 4677777766442 112222232 3677888877775554322 1111 45678888888888888743 6677
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccC--C----ccCcCCCCCCEEEccCCcccccChh
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF--P----LTLTSCMFLTAIRLSGNKIEEQISP 269 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~----~~~~~~~~L~~L~l~~n~l~~~~~~ 269 (479)
.+++|+.|.+.+-.+...-.-..+-.+++|+.||+|..+..... . +.-..+|+|+.||.+++.+.+...+
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 88888888887766652111123556888888888876543211 1 1123467888888888877665443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=67.11 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=15.2
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCC
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSN 365 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 365 (479)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 35555555555543 2332222 35555555544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=66.86 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=25.1
Q ss_pred CCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
++|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 68999999999876 3454433 689999998764
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=4.3e-05 Score=78.97 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=15.3
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 237 (479)
++|+|..||+++.+++ .+ .+++.+++|+.|.+.+-
T Consensus 171 sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMRNL 205 (699)
T ss_pred ccCccceeecCCCCcc-Cc--HHHhccccHHHHhccCC
Confidence 3444444444444443 22 13444444444444433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=1.3e-06 Score=81.17 Aligned_cols=280 Identities=19% Similarity=0.144 Sum_probs=123.7
Q ss_pred CCCeeecCCCcCCCcCC------CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc-ccccCCCc-cCCCCCCC
Q 047549 77 HLCHLNLSHNHLSFLSP------SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS-YLSGSIPD-DVSAAASL 148 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~------~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n-~~~~~~~~-~~~~l~~L 148 (479)
.|+.|.+++++-.+..+ ..|++++|++.++........-..-..|++|+++++..+ .++...-+ .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777664433322 126677776666642111011111235777777777773 33332222 22356777
Q ss_pred CEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhh----hcCCCCCeeeccCCcCccccCc-cc
Q 047549 149 EDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFL----MNCTNLITLNLRINNFRGDLSA-YN 222 (479)
Q Consensus 149 ~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~-~~ 222 (479)
++++++++. +++ .++.. .+.+...++.+.+++|.=. ..+.+ ..+..+.++++..+....+... ..
T Consensus 219 ~~lNlSwc~qi~~---~gv~~----~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 219 KYLNLSWCPQISG---NGVQA----LQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHhhhccCchhhc---CcchH----Hhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 777777763 332 11111 0234445555555554211 11111 2334445555444422101110 01
Q ss_pred cCCCCCCcEEEccCCcccc-cCCcc-CcCCCCCCEEEccCCc-ccccChhhh-hccCCCCEEEccCCCCCCCCCcccccc
Q 047549 223 FSTLHNLHTIDLGNNNFTG-SFPLT-LTSCMFLTAIRLSGNK-IEEQISPTI-LALVSVSYLSINNNNLSNITGAIGILM 298 (479)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~-~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~ 298 (479)
-..+..|+.++.+++...+ ..-.. -.++.+|+.+.+.+++ ++..-...+ .++..|+.+++..+...........-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 1234566666666553321 11111 2345667777766664 222222222 234566666666654433222223334
Q ss_pred CCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcce-ecCchhhcCCCCCCEEeCCCCc
Q 047549 299 GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK-GQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 299 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
+++.|+.+.++.+....... .........+...++.+.++++... +..-+.+..+++|+.+++-+++
T Consensus 370 ~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhh-hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 55666666665544332210 0001111123445555555555443 1222334455555555555543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00068 Score=54.76 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=37.5
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 253 (479)
|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +. .++...|..++.++.+.+.. .+.......+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444442 233333344444545555555443 32 33334455554555555543 2221223334445555
Q ss_pred CEEEccCCcccccChhhhhccCCCCEEEcc
Q 047549 254 TAIRLSGNKIEEQISPTILALVSVSYLSIN 283 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (479)
+.+++..+ +.......|.++ .++.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 333333344444 55555544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=7.6e-05 Score=65.58 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=37.7
Q ss_pred ccccccCCCCCCeeecCCCcCCCc--CCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccc
Q 047549 68 IYPFTGKLTHLCHLNLSHNHLSFL--SPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLS 135 (479)
Q Consensus 68 ~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~ 135 (479)
+......+..|+.|++.+..++.+ .|.+++|++|.++.|.+...+.++....++++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444444555666666666666544 34446666666666633222244444455566666666666654
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=52.27 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=37.8
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 253 (479)
|..+++|+.+.+.++ +.......|..++.++.+.+.. .+. .++...|..+++++.+.+..+ +...-...+..+ +|
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 344445555555443 4333344455555566666644 222 333345555666666666543 332333445554 66
Q ss_pred CEEEccCCcccccChhhhhccCCC
Q 047549 254 TAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+.+.+.. .+..+....|.++++|
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEE-TT-B-SS----GGG-----
T ss_pred eEEEECC-CccEECCccccccccC
Confidence 6666654 3334444555555444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00056 Score=60.23 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=16.9
Q ss_pred cCCCCCeeeccCC--cCccccCccccCCCCCCcEEEccCCccc
Q 047549 200 NCTNLITLNLRIN--NFRGDLSAYNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 200 ~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (479)
.+++|++|.++.| ...+.++. ....+++|+++++++|+++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence 3445555555555 22222221 1223345555555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=6e-05 Score=70.36 Aligned_cols=281 Identities=14% Similarity=0.086 Sum_probs=149.4
Q ss_pred CCcEEEcccccccc--CCCccCCCCCCCCEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCC-cCccccch-h
Q 047549 123 KLQTFRAGFSYLSG--SIPDDVSAAASLEDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGFLPQ-F 197 (479)
Q Consensus 123 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~~~~-~ 197 (479)
.|+.|.++++.-.+ .+-.....++++++|.+.++. ++...-..+ -..+++|+++++..| .++..... -
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl-------a~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL-------ARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH-------HHhcchhhhhhhcccchhHHHHHHHH
Confidence 57777787765432 122223467888888777764 221111111 134778888888774 55544333 2
Q ss_pred hhcCCCCCeeeccCCcCc-cccCccccCCCCCCcEEEccCCcccc--cCCccCcCCCCCCEEEccCCc-ccccChh-hhh
Q 047549 198 LMNCTNLITLNLRINNFR-GDLSAYNFSTLHNLHTIDLGNNNFTG--SFPLTLTSCMFLTAIRLSGNK-IEEQISP-TIL 272 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~ 272 (479)
...+++|++++++.+.-. +.--...+.+++.++.+...++.-.+ .+-..-+.+.-+..+++..+. ++..... .-.
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 356788888888877532 21001133455556666555542111 011112334445566655542 3332211 123
Q ss_pred ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec--Cchh
Q 047549 273 ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ--IPTW 350 (479)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~ 350 (479)
.+..|+.++.+++.-.+.......-.++++|+.+.+..+...+..... .-...++.|+.+++..+..... +...
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft----~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT----MLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh----hhhcCChhhhhhcccccceehhhhHhhh
Confidence 456778888777543221111123346788888888777532221111 0112456788888887765421 2222
Q ss_pred hcCCCCCCEEeCCCCcccccc-----CcccCCCCCCcEEEccCCcccc-cCCccccCCcccccccccccc
Q 047549 351 LGKLKKLQVLDLGSNQITGPI-----PGWLGNMPNLFYIDLSYNSISG-EFPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 351 l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~~~~~~ 414 (479)
-.+++.|+.+.+++|...... ...-..+..|..+.+++++.+. ..-+....++.|+.+++....
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 346788888888887654221 2223446678888888876652 233445667777776665443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.00011 Score=64.96 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=56.1
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccCh-hhhhccCCCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS-PTILALVSVS 278 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ 278 (479)
.+.+.++|++.++.++ ++. ....++.|+.|.|+-|+|+.. ..+..|++|++|.|+.|.|..... ..+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3556778888888876 443 346778888888888888744 346778888888888887765321 2345666777
Q ss_pred EEEccCCC
Q 047549 279 YLSINNNN 286 (479)
Q Consensus 279 ~L~L~~n~ 286 (479)
.|.|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 77776664
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.00016 Score=64.05 Aligned_cols=80 Identities=29% Similarity=0.317 Sum_probs=50.7
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcccccCCc-----cCc
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPL-----TLT 248 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~ 248 (479)
.+|+.|++|.|+-|+|+.. ..+..|++|++|+|..|.|. ++.. ..+.++++|+.|+|..|.-.+..+. .+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 4567777777777777632 34566777777777777765 3322 2456777777777777766554432 244
Q ss_pred CCCCCCEEE
Q 047549 249 SCMFLTAIR 257 (479)
Q Consensus 249 ~~~~L~~L~ 257 (479)
.+|+|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666665
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0039 Score=32.67 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=12.1
Q ss_pred CCcEEEccCCcccccCCccccC
Q 047549 380 NLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 380 ~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 45544544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0033 Score=63.51 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCCCCEEEccCC-cCccc-cchhhhcCCCCCeeeccCC-cCcccc---CccccCCCCCCcEEEccCCc-ccccCCccCc-
Q 047549 177 LANLKSLKLHTN-SLSGF-LPQFLMNCTNLITLNLRIN-NFRGDL---SAYNFSTLHNLHTIDLGNNN-FTGSFPLTLT- 248 (479)
Q Consensus 177 ~~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~- 248 (479)
++.|+.+.+.++ .++.. .......+++|+.|+++.+ ...... .......+++|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666666555 22211 2233445666666666652 111000 01122344566666666655 3332222222
Q ss_pred CCCCCCEEEccCCc-ccccChh-hhhccCCCCEEEccCCCC
Q 047549 249 SCMFLTAIRLSGNK-IEEQISP-TILALVSVSYLSINNNNL 287 (479)
Q Consensus 249 ~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l 287 (479)
.+++|+.|.+.++. ++...-. ....++.|+.|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666655554 3332222 223456666666666544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.002 Score=65.04 Aligned_cols=130 Identities=25% Similarity=0.232 Sum_probs=71.5
Q ss_pred cCCCCCCeeecCCCc-CCC--c---CCCCCCCCEEEcCCc-cc-ccCC-CCCCcCCCCCCCcEEEccccc-cccCCCccC
Q 047549 73 GKLTHLCHLNLSHNH-LSF--L---SPSVPFLSILDFSHN-YF-RGHC-QLPSGLGNFSKLQTFRAGFSY-LSGSIPDDV 142 (479)
Q Consensus 73 ~~l~~L~~L~L~~n~-l~~--~---~~~~~~L~~L~L~~n-~l-~~~~-~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~ 142 (479)
..++.|+.|.+..+. +.. . ....+.|+.|+++++ .. .... ........+++|+.++++++. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888887663 332 1 122278888888873 11 1100 111233456788888888877 554333333
Q ss_pred C-CCCCCCEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCCcCc-cc-cchhhhcCCCCCeeec
Q 047549 143 S-AAASLEDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS-GF-LPQFLMNCTNLITLNL 209 (479)
Q Consensus 143 ~-~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~-~~-~~~~l~~l~~L~~L~l 209 (479)
. .+++|++|.+..+. ++.. ++..+ ...++.|++|+++++... .. +......+++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~---gl~~i----~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE---GLVSI----AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchh---HHHHH----HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 3 27788888876665 3422 22221 345677888888877442 11 2222344666655443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.017 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=8.4
Q ss_pred ccEEEeeCCcceecCchhh
Q 047549 333 LVVLGIGNCEIKGQIPTWL 351 (479)
Q Consensus 333 L~~L~l~~n~l~~~~~~~l 351 (479)
|++|++++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 344333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.0008 Score=66.69 Aligned_cols=188 Identities=20% Similarity=0.163 Sum_probs=107.4
Q ss_pred CCeeeccCCcCcccc---CccccCCCCCCcEEEccCCcccccC----CccCcCC-CCCCEEEccCCcccccC----hhhh
Q 047549 204 LITLNLRINNFRGDL---SAYNFSTLHNLHTIDLGNNNFTGSF----PLTLTSC-MFLTAIRLSGNKIEEQI----SPTI 271 (479)
Q Consensus 204 L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~l~~n~l~~~~----~~~~ 271 (479)
+..+.+.+|.+...- -...+...+.|+.|++++|.+.+.- ...+... +.+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667778888775211 1124566778888888888876421 1223333 55677777777776542 3445
Q ss_pred hccCCCCEEEccCCCCCCCCC--cccc----ccCCCCCcEEEccCccccccCCCCccccccccccCC-ccEEEeeCCcce
Q 047549 272 LALVSVSYLSINNNNLSNITG--AIGI----LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQN-LVVLGIGNCEIK 344 (479)
Q Consensus 272 ~~l~~L~~L~L~~n~l~~~~~--~~~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~ 344 (479)
.....++.++++.|.+..... .... +....+++.|.+.++.++..........+ ...+. +..+++..|++.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l--~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL--ASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH--hccchhhHHHHHHhcCcc
Confidence 556778888888887752211 1112 22456677777777765532211111111 12223 555777777766
Q ss_pred ec----CchhhcCC-CCCCEEeCCCCccccc----cCcccCCCCCCcEEEccCCcccc
Q 047549 345 GQ----IPTWLGKL-KKLQVLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 345 ~~----~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
+. ....+..+ ..+++++++.|.+++. +...+..++.++++.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 43 22334444 5667777777777643 23445556677777777777763
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.086 Score=25.50 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=4.5
Q ss_pred CCCEEEcCCcccc
Q 047549 97 FLSILDFSHNYFR 109 (479)
Q Consensus 97 ~L~~L~L~~n~l~ 109 (479)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
|
... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.0029 Score=62.79 Aligned_cols=211 Identities=22% Similarity=0.197 Sum_probs=135.2
Q ss_pred CCEEEccCCcCccc----cchhhhcCCCCCeeeccCCcCccccC---ccccCCC-CCCcEEEccCCccccc----CCccC
Q 047549 180 LKSLKLHTNSLSGF----LPQFLMNCTNLITLNLRINNFRGDLS---AYNFSTL-HNLHTIDLGNNNFTGS----FPLTL 247 (479)
Q Consensus 180 L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~l-~~L~~L~l~~n~l~~~----~~~~~ 247 (479)
+..+.+.+|.+... +...+...+.|+.|+++.|.+.+.-. ...+... +.+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56677777776643 34455678899999999999872210 0122232 5677888888887643 44556
Q ss_pred cCCCCCCEEEccCCccccc----Chhhhh----ccCCCCEEEccCCCCCCCCCc--cccccCCCC-CcEEEccCcccccc
Q 047549 248 TSCMFLTAIRLSGNKIEEQ----ISPTIL----ALVSVSYLSINNNNLSNITGA--IGILMGCKN-LRMLLLCKIFFHEA 316 (479)
Q Consensus 248 ~~~~~L~~L~l~~n~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~~~~--~~~l~~~~~-L~~L~l~~n~~~~~ 316 (479)
...+.++.++++.|.+... .+..+. ...++++|.+.++.++..... ...+...+. ++.+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 6678899999999987421 233333 467899999999988743211 134455555 77799999987754
Q ss_pred CCCCcccccccccc-CCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccccC----cccCCCCCCcEEEcc
Q 047549 317 IPDENQITISSYAF-QNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIP----GWLGNMPNLFYIDLS 387 (479)
Q Consensus 317 ~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~ 387 (479)
......-.. ... +.++.++++.|.+++. +...+..++.++++.+++|.+.+.-. ........+..+-+.
T Consensus 249 g~~~L~~~l--~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 249 GVEKLLPCL--SVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred HHHHHHHHh--cccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 111111000 122 5679999999999864 44566778899999999999875321 223334455666666
Q ss_pred CCccc
Q 047549 388 YNSIS 392 (479)
Q Consensus 388 ~N~l~ 392 (479)
+++..
T Consensus 327 ~~~~~ 331 (478)
T KOG4308|consen 327 GTGKG 331 (478)
T ss_pred ccCcc
Confidence 55443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.25 Score=26.85 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=11.8
Q ss_pred CCCcEEEccCCcccccCCccc
Q 047549 379 PNLFYIDLSYNSISGEFPKEF 399 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~ 399 (479)
++|++|+|++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.25 Score=26.85 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=11.8
Q ss_pred CCCcEEEccCCcccccCCccc
Q 047549 379 PNLFYIDLSYNSISGEFPKEF 399 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~ 399 (479)
++|++|+|++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.0099 Score=51.59 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=48.8
Q ss_pred ccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCC
Q 047549 72 TGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASL 148 (479)
Q Consensus 72 l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 148 (479)
+..+...+.||++.|++......+ ..+..|+++.|.+. .+|..++....++++++..|..+ ..|.++...+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~---~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK---FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh---hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 344445555555555544333222 34445555555555 56666666666667777666666 566666666777
Q ss_pred CEEECCCCccc
Q 047549 149 EDISLPVNQLS 159 (479)
Q Consensus 149 ~~L~l~~n~l~ 159 (479)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 76666666543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.013 Score=50.88 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=40.7
Q ss_pred ccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
.+...+.||++.|++. .+-..|+.++.+..|+++.|++. ..|..+.+...+..+++..|..+ ..|.++...+.++.
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 3445555666655554 22333444555556666666555 45555555555555555555555 55555555555544
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.5 Score=25.63 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=11.4
Q ss_pred CCCCEEeCCCCccccccCc
Q 047549 355 KKLQVLDLGSNQITGPIPG 373 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~ 373 (479)
++|+.|+|++|++....+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776643333
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.5 Score=25.63 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=11.4
Q ss_pred CCCCEEeCCCCccccccCc
Q 047549 355 KKLQVLDLGSNQITGPIPG 373 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~ 373 (479)
++|+.|+|++|++....+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776643333
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.85 E-value=0.078 Score=45.21 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=48.1
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcC------CCcCCCCCCCCEEEcCCcc-cccCCCCCCcCCCCCCCc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHL------SFLSPSVPFLSILDFSHNY-FRGHCQLPSGLGNFSKLQ 125 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l------~~~~~~~~~L~~L~L~~n~-l~~~~~l~~~~~~l~~L~ 125 (479)
-|+.+|=+++.+.+.--+.+..++.++.|.+.++.- ..+....++|+.|++++|. |+. .--..+.++++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~--~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD--GGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech--hHHHHHHHhhhhH
Confidence 478888899888877777888888888888887742 2223334667777777663 332 1112344555555
Q ss_pred EEEccc
Q 047549 126 TFRAGF 131 (479)
Q Consensus 126 ~L~l~~ 131 (479)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555443
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=86.44 E-value=0.31 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=8.2
Q ss_pred CCCCEEEccCCcccccC
Q 047549 251 MFLTAIRLSGNKIEEQI 267 (479)
Q Consensus 251 ~~L~~L~l~~n~l~~~~ 267 (479)
++|++|++++|.++...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45566666666655433
|
... |
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=83.25 E-value=5.4 Score=38.97 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=16.6
Q ss_pred ccEEEeeCCcceecCc---hhhcCCCCCCEEeCCCCccc
Q 047549 333 LVVLGIGNCEIKGQIP---TWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 333 L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~Ls~n~l~ 368 (479)
+..+.++.|.+....- ..+..-+.+.+|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 4445555554442211 12233455666666666554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.28 E-value=0.3 Score=41.78 Aligned_cols=81 Identities=19% Similarity=0.120 Sum_probs=55.9
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccccc-Cccc-CCCCCCcEEEccCC-cccccCCccccCCcccccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPI-PGWL-GNMPNLFYIDLSYN-SISGEFPKEFCGLPALALQ 408 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l 408 (479)
.++.+|.+++.+..+--+.+..++.++.|.+.+|.-.+.. -+.+ ...++|+.|+|++| +||..--.++..+++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4788888998888766677888888889988888643221 0111 13578999999977 4665445566777777776
Q ss_pred cccc
Q 047549 409 EAKN 412 (479)
Q Consensus 409 ~~~~ 412 (479)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 479 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-18 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 5e-18 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-06 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 7e-74
Identities = 123/482 (25%), Positives = 190/482 (39%), Gaps = 47/482 (9%)
Query: 11 ACNQIDQETLLSL--NFNASNPPLNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLR--- 65
+ L+S N +WS + + C ++G+ C +VT + L + L
Sbjct: 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRD-DKVTSIDLSSKPLNVGF 66
Query: 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLS---ILDFSHNYFRGHCQLPSGLGNFS 122
++ LT L L LS++H++ + LD S N G + LG+ S
Sbjct: 67 SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126
Query: 123 KLQTFRAGFSYLSGSIPDDVSAA-ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLK 181
L+ + L SLE + L N +SGA G V LK
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS-----DGCGELK 181
Query: 182 SLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 241
L + N +SG + + C NL L++ NNF + L +D+ N +G
Sbjct: 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSG 237
Query: 242 SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI--GILMG 299
F +++C L + +S N+ I P L S+ YLS+ N TG I +
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKF---TGEIPDFLSGA 292
Query: 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT-WLGKLKKLQ 358
C L L L F+ A+P S L L + + G++P L K++ L+
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPF----FGS--CSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 359 VLDLGSNQITGPIPGWLGNM-PNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGN 417
VLDL N+ +G +P L N+ +L +DLS N+ SG C P LQE N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL--YLQNN 404
Query: 418 QLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNN 477
+ P T ++L N L+G+IP +G++ L L L LN
Sbjct: 405 GFTGKI--PPTLSNCSELVS---------LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 478 FS 479
Sbjct: 454 LE 455
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 5e-67
Identities = 115/441 (26%), Positives = 177/441 (40%), Gaps = 37/441 (8%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF--LSILDFSHNYFRGHC 112
HL + L G T L LN+S N P +P L L + N F G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG-- 283
Query: 113 QLPSGL-GNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTS 171
++P L G L ++ G++P + + LE ++L N SG +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT----- 338
Query: 172 LNIGKLANLKSLKLHTNSLSGFLPQFLMNCT-NLITLNLRINNFRGDL-SAYNFSTLHNL 229
+ K+ LK L L N SG LP+ L N + +L+TL+L NNF G + + + L
Sbjct: 339 --LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 230 HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289
+ L NN FTG P TL++C L ++ LS N + I ++ +L + L + N L
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE- 455
Query: 290 ITGAI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP 348
G I LM K L L+L IP +S+ NL + + N + G+IP
Sbjct: 456 --GEIPQELMYVKTLETLILDFNDLTGEIPSG----LSN--CTNLNWISLSNNRLTGEIP 507
Query: 349 TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408
W+G+L+ L +L L +N +G IP LG+ +L ++DL+ N +G P
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK--- 564
Query: 409 EAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA----------IYLRNNGLNGSI 458
A N G + K + + + + G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 459 PIEIGNVMFLHVLDLSLNNFS 479
N + LD+S N S
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLS 645
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 3e-58
Identities = 108/434 (24%), Positives = 161/434 (37%), Gaps = 70/434 (16%)
Query: 55 THLWLPDRGLRGSIYPFT-GKLTHLCHLNLSHNHLS-----FLSPSVPFLSILDFSHNYF 108
L L G + T K+ L L+LS N S L+ L LD S N F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 109 RGHCQLPSGLGNFSK--LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGV 166
G + L K LQ + +G IP +S + L + L N LSG I +
Sbjct: 381 SG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-- 436
Query: 167 VNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL 226
++G L+ L+ LKL N L G +PQ LM L TL L N+ G++ + S
Sbjct: 437 ------SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNC 489
Query: 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286
NL+ I L NN TG P + L ++LS N I + S+ +L +N N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 287 LS-NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKG 345
+ I A+ + F I + + E +G
Sbjct: 550 FNGTIPAAMFKQS-------GKIAANFIAGKRYVY----IKNDGMKKECHGAGNLLEFQG 598
Query: 346 QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L +L ++ S G N ++ ++D+SYN +SG PKE +P L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 406 ALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNV 465
+ L +N ++GSIP E+G++
Sbjct: 659 F---------------------------------------ILNLGHNDISGSIPDEVGDL 679
Query: 466 MFLHVLDLSLNNFS 479
L++LDLS N
Sbjct: 680 RGLNILDLSSNKLD 693
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 4e-51
Identities = 87/376 (23%), Positives = 143/376 (38%), Gaps = 38/376 (10%)
Query: 55 THLWLPDRGLRGSIYPFTGKLT-HLCHLNLSHNHLS------FLSPSVPFLSILDFSHNY 107
L L G + L+ L L+LS N+ S L L +N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 108 FRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV 167
F G ++P L N S+L + F+YLSG+IP + + + L D+ L +N L G I ++
Sbjct: 406 FTG--KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 168 NLTSL----------------NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRI 211
+ +L + NL + L N L+G +P+++ NL L L
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 212 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTI 271
N+F G++ A +L +DL N F G+ P + ++ N I + I
Sbjct: 524 NSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYI 578
Query: 272 LALVSVSYLSINNNNLSNITGAIGILMG-CKNLRMLLLCKIFFHEAIPDENQITISSYAF 330
N L G + + +
Sbjct: 579 KNDGMKKECHGAGNLL-EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN------N 631
Query: 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390
+++ L + + G IP +G + L +L+LG N I+G IP +G++ L +DLS N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 391 ISGEFPKEFCGLPALA 406
+ G P+ L L
Sbjct: 692 LDGRIPQAMSALTMLT 707
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-44
Identities = 100/358 (27%), Positives = 157/358 (43%), Gaps = 41/358 (11%)
Query: 64 LRGSIYPFTGK--LTHLCHLNLSHNHLS-FLSPSV---PFLSILDFSHNYFRGHCQLPSG 117
G I P + L L L +N + + P++ L L S NY G +PS
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--TIPSS 437
Query: 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN---- 173
LG+ SKL+ + + L G IP ++ +LE + L N L+G I +G+ N T+LN
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 174 ------------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAY 221
IG+L NL LKL NS SG +P L +C +LI L+L N F G +
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP-- 555
Query: 222 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE--QISPTILALVSVSY 279
+ + + + N G + + + +GN +E S + L + +
Sbjct: 556 --AAMFKQ-SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612
Query: 280 LSINNNNLS-NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGI 338
+I + + + ++ L + IP E I S L +L +
Sbjct: 613 CNITSRVYGGHTSPTFDNN---GSMMFLDMSYNMLSGYIPKE----IGS--MPYLFILNL 663
Query: 339 GNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFP 396
G+ +I G IP +G L+ L +LDL SN++ G IP + + L IDLS N++SG P
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 14/137 (10%)
Query: 64 LRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLG 119
+G +L+ N++ + + LD S+N G+ +P +G
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY--IPKEIG 653
Query: 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLAN 179
+ L G + +SGSIPD+V L + L N+L G I + LT L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT------ 707
Query: 180 LKSLKLHTNSLSGFLPQ 196
+ L N+LSG +P+
Sbjct: 708 --EIDLSNNNLSGPIPE 722
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 54/164 (32%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHC 112
+ R G P + L++S+N
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM------------------------- 643
Query: 113 QLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL 172
LSG IP ++ + L ++L N +SG+I +
Sbjct: 644 ---------------------LSGYIPKEIGSMPYLFILNLGHNDISGSIPD-------- 674
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG 216
+G L L L L +N L G +PQ + T L ++L NN G
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 4e-45
Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 37/308 (12%)
Query: 10 QACNQIDQETLLSLNFNASNPPL--NWSFSTDCC--LWEGIKCDSEAQ---VTHLWLPDR 62
+ CN D++ LL + + NP +W +TDCC W G+ CD++ Q V +L L
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 63 GLRGS--IYPFTGKLTHLCHLNLSH-NHLS-FLSPSV---PFLSILDFSHNYFRGHCQLP 115
L I L +L L + N+L + P++ L L +H G +P
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIP 118
Query: 116 SGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-- 173
L L T ++ LSG++P +S+ +L I+ N++SGAI + + + L
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 174 ---------------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDL 218
L NL + L N L G + N ++L N+ DL
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 219 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278
NL+ +DL NN G+ P LT FL ++ +S N + +I P L
Sbjct: 238 G--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFD 294
Query: 279 YLSINNNN 286
+ NN
Sbjct: 295 VSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 7e-34
Identities = 62/310 (20%), Positives = 107/310 (34%), Gaps = 76/310 (24%)
Query: 173 NIGKLANLKSLKLHTNSLSG--FLPQFLMNCTNLITLNLR-INNFRGDLSAYNFSTLHNL 229
+ + +L L +L +P L N L L + INN G + + L L
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQL 103
Query: 230 HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289
H + + + N +G+ P L+ L + S N + + P+I +L ++ ++ + N +S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS- 162
Query: 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT 349
GAI G + L + I + G+IP
Sbjct: 163 --GAIPDSYG--SFSKLF--------------------------TSMTISRNRLTGKIPP 192
Query: 350 WLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409
L L +DL N + G G+ N I L+ NS++ + + L
Sbjct: 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG-- 248
Query: 410 AKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLH 469
+ LRNN + G++P + + FLH
Sbjct: 249 -------------------------------------LDLRNNRIYGTLPQGLTQLKFLH 271
Query: 470 VLDLSLNNFS 479
L++S NN
Sbjct: 272 SLNVSFNNLC 281
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 9e-30
Identities = 54/260 (20%), Positives = 87/260 (33%), Gaps = 66/260 (25%)
Query: 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKI--EEQISPTILALVSVSYLSINNNNLS 288
T D N + G T T + + LSG + I ++ L +++L I N
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-- 87
Query: 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP 348
N+ G I P I+ L L I + + G IP
Sbjct: 88 NLVGPI-----------------------PPA----IAK--LTQLHYLYITHTNVSGAIP 118
Query: 349 TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408
+L ++K L LD N ++G +P + ++PNL I N ISG P + L
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-- 176
Query: 409 EAKNRADGNQLQLPLFVPETKCALYNQQYNKLF-SLPPAI--------YLRNNGLNGSIP 459
+ + N+L +PP L N L G
Sbjct: 177 --------TSMTI--------------SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214
Query: 460 IEIGNVMFLHVLDLSLNNFS 479
+ G+ + L+ N+ +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLA 234
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-42
Identities = 80/552 (14%), Positives = 140/552 (25%), Gaps = 110/552 (19%)
Query: 19 TLLSLNFNASNPPLNWSFSTDCCLW---EGIKCDSEAQVTHLWLPDRGLRGSIYP----- 70
S N + LNW+F+ + +W G+ D+ +VT L L G +G +
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346
Query: 71 --------------------------------------------FTGKLTHLCHLNLSHN 86
F L +L +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406
Query: 87 HLSFLSP--SVPFLSILDFSHNYFRGH----CQLPSGLGNFSKLQTFRAGFSYLSGSIPD 140
++ + S + + + +KLQ S +
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI- 465
Query: 141 DVSAAASLEDISLPVNQLSGAISNGVVNLTSL----------------NIGKLANLKSLK 184
A ED + + NL L + L L+SL
Sbjct: 466 ----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521
Query: 185 LHTNSLSGF---------LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
+ N L + + NN ++ + + L +D
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAI 294
+N + + LT ++L N+IEE I A V L ++N L I
Sbjct: 582 HNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
+ + ++ Y N + + EI+
Sbjct: 639 NA-KSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696
Query: 355 KKLQVLDLGSNQIT-------GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407
+ + L +N +T P G N L IDL +N ++ +F L
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755
Query: 408 QEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMF 467
N P + F + N + P I
Sbjct: 756 SNM--DVSYNCFS---SFPTQPLNSSQLKA---FGIRHQRDAEGNRILRQWPTGITTCPS 807
Query: 468 LHVLDLSLNNFS 479
L L + N+
Sbjct: 808 LIQLQIGSNDIR 819
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 5e-35
Identities = 62/440 (14%), Positives = 135/440 (30%), Gaps = 93/440 (21%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPF-----------------------LSILDFSHNYFR 109
+LT L + +++ ++ + +V + L+ ++ +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504
Query: 110 GHCQLPSGLGNFSKLQTFRAGFSYLSG---------SIPDDVSAAASLEDISLPVNQLSG 160
QLP L + +LQ+ + + DD ++ + N L
Sbjct: 505 T--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 161 AISNGV----VNLTSLN-----------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205
++ V L L+ G L LKL N + F +
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622
Query: 206 TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG-----SFPLTLTSCMFLTAIRLSG 260
L N + + +N +++ + ++D N S + + + + LS
Sbjct: 623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682
Query: 261 NKIEEQISPTILALVSVSYLSINNNNLSNI-----TGAIGILMGCKNLRMLLLCKIFFHE 315
N+I++ + +S + ++NN +++I G L + L
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL------- 735
Query: 316 AIPDENQIT-----ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDL------GS 364
N++T + L + + PT +L+ +
Sbjct: 736 ---RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791
Query: 365 NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFC-GLPALALQEAKNRADGNQLQ--- 420
N+I P + P+L + + N I + ++ L L + N
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIA-------DNPNISID 843
Query: 421 LPLFVPETKCALYNQQYNKL 440
+ P + +Y Y+K
Sbjct: 844 VTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 66/373 (17%), Positives = 117/373 (31%), Gaps = 53/373 (14%)
Query: 60 PDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQL 114
+ + + + +N+L S L +LD HN R L
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HL 588
Query: 115 PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAAS-LEDISLPVNQLSGAISNGVVNLTSLN 173
+ G KL + ++ + IP+D A +E + N+L N
Sbjct: 589 EA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-------IPNIFN 639
Query: 174 IGKLANLKSLKLHTNSLSG-----FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228
+ + S+ N + N T+ L N + F+T
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSP 698
Query: 229 LHTIDLGNNNFT-------GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA--LVSVSY 279
+ TI L NN T + LT I L NK+ +S A L +S
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSN 757
Query: 280 LSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISS----YAFQNLVV 335
+ ++ N S+ L+ + H+ + N+I +L+
Sbjct: 758 MDVSYNCFSSFPTQPL---NSSQLKAFGIR----HQRDAEGNRILRQWPTGITTCPSLIQ 810
Query: 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395
L IG+ +I+ + L +L +LD+ N + L Y+
Sbjct: 811 LQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ--- 864
Query: 396 PKEFCGLPALALQ 408
+ G AL ++
Sbjct: 865 --DIRGCDALGIE 875
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 25/224 (11%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHC 112
+ + L ++ + + + LS+N ++ + +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-------------- 719
Query: 113 QLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAA--SLEDISLPVNQLSGAISNGVVNLT 170
N L T F+ L+ S+ DD A L ++ + N S +N +
Sbjct: 720 -KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776
Query: 171 SLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230
L N + P + C +LI L + N+ + + L+
Sbjct: 777 QLK--AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND----IRKVDEKLTPQLY 830
Query: 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274
+D+ +N ++ + L +K ++ L +
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 5e-42
Identities = 84/441 (19%), Positives = 147/441 (33%), Gaps = 57/441 (12%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
T++ LNL+HN L L + L+ LD N P L+
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL--EPELCQKLPMLKVLNLQ 81
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
+ LS + +L ++ L N + +N K NL +L L N L
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN--------PFVKQKNLITLDLSHNGL 133
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN--LHTIDLGNNNFTGSFPLTLT 248
S + NL L L N + L + N L ++L +N P
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Query: 249 SCMFLTAIRLSGNKIEEQISPTI---LALVSVSYLSINNNNLSNITGAIGILMGCKNLRM 305
+ L + L+ ++ ++ + LA S+ LS++N+ LS + + + NL M
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 306 LLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLD 361
L L N + + + +F L + I+ L L ++ L+
Sbjct: 253 LDL----------SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302
Query: 362 LGSN---------QITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL-ALQEAK 411
L + + + L ++++ N I G F GL L L +
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 412 NRADGNQLQLPLFVPETKCALY--NQQYNKLFSLPP----------AIYLRNNGLNGSIP 459
+ L FV L+ N NK+ + + L N + +
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 460 I-EIGNVMFLHVLDLSLNNFS 479
E + + + LS N +
Sbjct: 423 GQEWRGLENIFEIYLSYNKYL 443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 8e-41
Identities = 92/474 (19%), Positives = 158/474 (33%), Gaps = 69/474 (14%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV------PFLSILDFSHN 106
+ L L GL + +L +L L LS+N + L L L+ S N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 107 YFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAA---SLEDISLPVNQLSGAIS 163
+ P +L L S+ + + S+ ++SL +QLS +
Sbjct: 182 QIKEFS--PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 164 NGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
+ L K NL L L N+L+ L L NN + L +++
Sbjct: 240 TTFLGL------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSL 292
Query: 224 STLHNLHTIDLGNNNFTGSF---------PLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274
L N+ ++L + S + L + + N I S L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 275 VSVSYLSINNNNLSNITGAIGILMGCKN--LRMLLLCKIFFHEAIPDENQIT-ISSYAFQ 331
+++ YLS++N+ S T + + L +L L +N+I+ I S AF
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL----------TKNKISKIESDAFS 402
Query: 332 ---NLVVLGIGNCEIKGQIPTW-LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLS 387
+L VL +G EI ++ L+ + + L N+ +P+L + L
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462
Query: 388 YNSISG--EFPKEFCGLPAL----------------ALQEAKN----RADGNQLQLPLFV 425
++ P F L L L+ + N L
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA--RLW 520
Query: 426 PETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
L L + L +NG + ++ L ++DL LNN +
Sbjct: 521 KHANPGGPIYFLKGLSHL-HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-39
Identities = 62/364 (17%), Positives = 121/364 (33%), Gaps = 21/364 (5%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRG 110
T L L L L L + L +N++ L + L+ ++ +
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 111 HCQL-------PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAIS 163
L L+ + + G + + +L+ +SL + S
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL--- 367
Query: 164 NGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
+ + + L L L N +S +L L+L +N +L+ +
Sbjct: 368 -RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIE--EQISPTILALVSVSYLS 281
L N+ I L N + + L + L ++ + L +++ L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 282 INNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSY--AFQNLVVLGIG 339
++NNN++NI +L G + L +L L N + +L +L +
Sbjct: 487 LSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 340 NCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEF 399
+ L +L+++DLG N + N +L ++L N I+ K F
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Query: 400 CGLP 403
Sbjct: 605 GPAF 608
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 5e-39
Identities = 97/442 (21%), Positives = 157/442 (35%), Gaps = 53/442 (11%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128
KL L LNL HN LS LS L+ L N + + L T
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLD 127
Query: 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
+ LS + +L+++ L N++ S L+I ++LK L+L +N
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE------ELDIFANSSLKKLELSSN 181
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN--LHTIDLGNNNFTGSFPLT 246
+ F P L L L L+ L N + + L N+ + + T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 247 LTSCMF--LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLR 304
+ LT + LS N + + + L + Y + NN+ ++ L G N+R
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS--HSLHGLFNVR 299
Query: 305 MLLLCKIFFHEAIPDENQITISSYAFQN---LVVLGIGNCEIKGQIPTWLGKLKKLQVLD 361
L L + F ++I + I ++FQ L L + + +I G L L+ L
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 362 LGSN--QITGPIPGWLGNMPN--LFYIDLSYNSISGEFPKEFCGLPALA---LQEAKNRA 414
L ++ + ++ + L ++L+ N IS F L L L
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG------ 413
Query: 415 DGNQLQLPLFVPETKCALYNQQY-----NKLFSLPP----------AIYLRNNGLNG--S 457
N++ L + L N NK L + LR L S
Sbjct: 414 -LNEIGQEL-TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471
Query: 458 IPIEIGNVMFLHVLDLSLNNFS 479
P + L +LDLS NN +
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIA 493
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-38
Identities = 84/407 (20%), Positives = 151/407 (37%), Gaps = 57/407 (14%)
Query: 81 LNLSHNHLSFLSPSVP-FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIP 139
+ SH L+ + +P +++L+ +HN R + +S+L + GF+ +S P
Sbjct: 9 ADCSHLKLTQVPDDLPTNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEP 66
Query: 140 DDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199
+ KL LK L L N LS +
Sbjct: 67 E--------------------------------LCQKLPMLKVLNLQHNELSQLSDKTFA 94
Query: 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLS 259
CTNL L+L N+ + + F NL T+DL +N + + T L + LS
Sbjct: 95 FCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153
Query: 260 GNKIEEQISPTI--LALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
NKI+ S + A S+ L +++N + + G L L L + ++
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEF--SPGCFHAIGRLFGLFLNNVQLGPSL 211
Query: 318 PDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLK--KLQVLDLGSNQITGPIPGWL 375
++ + +++ ++ L + N ++ T LK L +LDL N +
Sbjct: 212 TEKLCLELANT---SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 376 GNMPNLFYIDLSYNSISGEFPKEFCGLPALA---LQEAKNRADGNQLQLPLFVPETKCAL 432
+P L Y L YN+I F GL + L+ + + + LP + L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Query: 433 YNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
++ + + +N + G ++ L L LS + S
Sbjct: 329 KCLEH---------LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-26
Identities = 63/354 (17%), Positives = 108/354 (30%), Gaps = 46/354 (12%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNF--SKLQT 126
L L HLN+ N + + ++ L L S+++ + S L
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLH 186
+ +S D S LE + L +N++ ++ L N+ + L
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE-------WRGLENIFEIYLS 438
Query: 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNFSTLHNLHTIDLGNNNFTGSFPL 245
N +L L LR + D S F L NL +DL NNN
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 246 TLTSCMFLTAIRLSGNKIEE--------QISPTILALVSVSYLSINNNNLSNITGAIGIL 297
L L + L N + + L + L++ +N I +
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV--EVF 556
Query: 298 MGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGK 353
L+++ L N + + + F +L L + I G
Sbjct: 557 KDLFELKIIDL----------GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 354 -LKKLQVLDLGSNQITGPIP--GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPA 404
+ L LD+ N W N +I+ ++ +I C P
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVN-----WINETHTNIPELSSHYLCNTPP 655
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 48/269 (17%), Positives = 91/269 (33%), Gaps = 55/269 (20%)
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
+ D + T P L + +T + L+ N++ + ++ L + N +
Sbjct: 5 SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEI 343
S + + L++L L N+++ +S F NL L + + I
Sbjct: 62 SKLEP--ELCQKLPMLKVLNL----------QHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP 403
+ K K L LDL N ++ G + NL + LS N I +E
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 404 ALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA----------IYLRNNG 453
+L++ L+L N++ P ++L N
Sbjct: 170 NSSLKK---------LEL--------------SSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 454 LNGSIPIEIGNVMF---LHVLDLSLNNFS 479
L S+ ++ + + L LS + S
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLS 235
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 43/221 (19%), Positives = 65/221 (29%), Gaps = 56/221 (25%)
Query: 275 VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAF--- 330
VS ++ L+ + + N+ +L L NQ+ + + F
Sbjct: 4 VSHEVADCSHLKLTQVPDDLP-----TNITVLNL----------THNQLRRLPAANFTRY 48
Query: 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390
L L +G I P KL L+VL+L N+++ NL + L NS
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 391 ISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA---- 446
I F L L L +N L S
Sbjct: 109 IQKIKNNPFVKQKNL-----------ITLDL--------------SHNGLSSTKLGTQVQ 143
Query: 447 ------IYLRNNGLNGSIPIEIGNV--MFLHVLDLSLNNFS 479
+ L NN + E+ L L+LS N
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 4e-40
Identities = 76/485 (15%), Positives = 150/485 (30%), Gaps = 89/485 (18%)
Query: 22 SLNFNASNPPLNWSFSTDCCLW---EGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHL 78
S + P NW+F+ + +W G+ +S +VT L L G G + G+LT L
Sbjct: 48 SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107
Query: 79 CHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSI 138
L L + P G+ + + + +
Sbjct: 108 EVLALGSHGEKVNERL------------------FGPKGISANMSDEQKQKMRMHYQKTF 149
Query: 139 PDDVSAAA--SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
D L + + +I + +N+++ + +
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT--------QIGQLSNNITF-VSK 200
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
+M T L + + F + + + L + LT +
Sbjct: 201 AVMRLTKLRQFYMGNSPFVA------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254
Query: 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEA 316
+ ++ + AL + +++ N + E
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISG------------------------EQ 290
Query: 317 IPDENQITISSYAFQNLVVLGIGNCEIK-GQIPTWLGKLKKLQVLDLGSNQITGPIPGWL 375
+ D+ Q + + + ++ IG +K + T L K+KKL +L+ NQ+ G +P
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-F 349
Query: 376 GNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQL-QLPLFVPETKCAL-- 432
G+ L ++L+YN I+ P FCG ++ N+L +P ++
Sbjct: 350 GSEIKLASLNLAYNQITE-IPANFCGFTE-QVENL--SFAHNKLKYIPNIFDAKSVSVMS 405
Query: 433 -----YNQ----QYNKLFSLPPAI---------YLRNNGLNGSIPIEIGNVMFLHVLDLS 474
YN+ L P L NN ++ L ++L
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465
Query: 475 LNNFS 479
N +
Sbjct: 466 GNMLT 470
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-36
Identities = 52/370 (14%), Positives = 107/370 (28%), Gaps = 59/370 (15%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQL 114
T + + + + F L + +N++ N L
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL------------- 298
Query: 115 PSGLGNFSKLQTFRAGFSYL-SGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN 173
+ K+Q G++ L + + + L + NQL G +
Sbjct: 299 -ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--------- 348
Query: 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 233
G L SL L N ++ F + L+ N + + ++ ++ + ID
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408
Query: 234 LGNNNFTG-------SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286
N T + +++I LS N+I + +S +++ N
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468
Query: 287 LSNI-----TGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-----ISSYAFQNLVVL 336
L+ I L + L N++T + LV +
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDL----------RFNKLTKLSDDFRATTLPYLVGI 518
Query: 337 GIGNCEIKGQIPTWLGKLKKLQVLDLG------SNQITGPIPGWLGNMPNLFYIDLSYNS 390
+ PT L+ + N+ P + P+L + + N
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 391 ISGEFPKEFC 400
I + ++
Sbjct: 578 IR-KVNEKIT 586
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 70/441 (15%), Positives = 121/441 (27%), Gaps = 98/441 (22%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132
+LT L + ++ + + + Y + + N L
Sbjct: 203 MRLTKLRQFYMGNSPFV---AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259
Query: 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV-----------NLTSLN-------- 173
+P + A ++ I++ N+ + +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 174 ------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
+ K+ L L+ N L G LP F + L +LNL N + A
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITE-IPANFCGFTE 377
Query: 228 NLHTIDLGNNNFTG-SFPLTLTSCMFLTAIRLSGNKIE-------EQISPTILALVSVSY 279
+ + +N S ++AI S N+I + + PT ++VS
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 280 LSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIG 339
++++NN +S + L + L N +T I
Sbjct: 438 INLSNNQISKFPK--ELFSTGSPLSSINL----------MGNMLT------------EIP 473
Query: 340 NCEIKGQIPTWLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYIDLSYNSISGEFPKE 398
L +DL N++T +P L IDLSYNS S FP +
Sbjct: 474 K-NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531
Query: 399 FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSI 458
L K F + + N
Sbjct: 532 PLNSSTL---------------------------------KGFGIRNQRDAQGNRTLREW 558
Query: 459 PIEIGNVMFLHVLDLSLNNFS 479
P I L L + N+
Sbjct: 559 PEGITLCPSLTQLQIGSNDIR 579
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 5e-36
Identities = 61/363 (16%), Positives = 113/363 (31%), Gaps = 35/363 (9%)
Query: 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSP------SVPFLSILDFSHNYFRGHCQLPSGLG 119
I P LN + ++ L + F
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLAN 179
+++ Y + + L+++ L LS + +G+V L+
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS--------T 302
Query: 180 LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
LK L L N N +L L+++ N R +L L NL +DL +++
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 240 TGS--FPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGIL 297
S L L + L ++ LS N+ + + L + L A
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQSPF 421
Query: 298 MGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKG---QIPTW 350
L++L L + + S F L L + Q
Sbjct: 422 QNLHLLKVLNL----------SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410
L L +L++L L ++ ++ + ++DLS+N ++ + L + L A
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531
Query: 411 KNR 413
N
Sbjct: 532 SNH 534
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 8e-35
Identities = 68/428 (15%), Positives = 127/428 (29%), Gaps = 58/428 (13%)
Query: 80 HLNLSHNHLSFLSPSVP-FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSI 138
N + L+ + ++P L+FS N + L +
Sbjct: 16 TYNCENLGLNEIPGTLPNSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 139 PDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN----------------IGKLANLKS 182
D + L+ + L N L + +L + L+S
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 183 LKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG-NNNFTG 241
L L +N +S L L+ + N LS + S+L + L N N
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIA 192
Query: 242 SFPLTLTSCMFLTAIRLSGNKIEEQISPTI--LALVSVSYLSINNNNLSNITGAIGILMG 299
++ G + I + + S+ + + + +I+ A+ +
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 300 CKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQN---LVVLGIGNCEIKGQIPTWLGKLK 355
++ + L ++ ISS F L L + + ++P+ L L
Sbjct: 253 EMSVESINL----------QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGLPALA---LQEAK 411
L+ L L +N+ N P+L ++ + N+ E L L L
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS--- 358
Query: 412 NRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVL 471
+ ++ L N + L SL L N L +L
Sbjct: 359 ----HDDIE---TSDCCNLQLRNL--SHLQSL----NLSYNEPLSLKTEAFKECPQLELL 405
Query: 472 DLSLNNFS 479
DL+
Sbjct: 406 DLAFTRLK 413
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 9e-34
Identities = 83/443 (18%), Positives = 146/443 (32%), Gaps = 55/443 (12%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF----LSILDFSHNYFRG 110
HL+ G+ + L L L NH+S + F L +LDF +N
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 111 HCQLPSGLGNFSKLQTFRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNL 169
+ + + + I +A + ++ Q I G+ N
Sbjct: 168 LS--KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225
Query: 170 TSLNIGKLANLKSLKLHTNSLSGFLPQFLMNC--TNLITLNLRINNFRGDLSAYNFSTLH 227
T + +L P ++ ++NL+ + F +S+ F
Sbjct: 226 T------IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFS 278
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
L +DL + + P L L + LS NK E + S+++LSI N
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT---ISSYAFQNLV---VLGIGNC 341
G G L +NLR L L + I + +NL L +
Sbjct: 338 RLELGT-GCLENLENLRELDL----------SHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 342 EIKGQIPTWLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 400
E + +L++LDL ++ N+ L ++LS++ + + F
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 401 GLPALA---LQEAKNRADGNQLQ-LPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNG 456
GLPAL LQ GN + + L + + L L+
Sbjct: 447 GLPALQHLNLQ-------GNHFPKGNIQKTNSLQTLGRLEI---------LVLSFCDLSS 490
Query: 457 SIPIEIGNVMFLHVLDLSLNNFS 479
++ ++ +DLS N +
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLT 513
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-33
Identities = 74/430 (17%), Positives = 131/430 (30%), Gaps = 72/430 (16%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
L L L+ N L F++ + L L F L N L++ G
Sbjct: 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLG 137
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
+++S L+ + N + + +L SL L+ N +
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA------TNLSLNLNGNDI 191
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGD-LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 249
+G + + +LN ST+ +L + + P
Sbjct: 192 AG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 250 C--MFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLL 307
M + +I L + S T + L + +LS + + G L+ L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV---GLSTLKKLV 307
Query: 308 LCKIFFHEAIPDENQIT-ISSYAFQN---LVVLGIGNCEIKGQIPTW-LGKLKKLQVLDL 362
L N+ + + N L L I + ++ T L L+ L+ LDL
Sbjct: 308 L----------SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 363 GSNQIT--GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQ 420
+ I L N+ +L ++LSYN + F P L L
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-----------ELLD 406
Query: 421 LPLFVPETKCALYNQQYNKLFSLPP-----------AIYLRNNGLNGSIPIEIGNVMFLH 469
L + +L + L ++ L+ S + L
Sbjct: 407 L--------------AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 470 VLDLSLNNFS 479
L+L N+F
Sbjct: 453 HLNLQGNHFP 462
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-29
Identities = 66/347 (19%), Positives = 114/347 (32%), Gaps = 64/347 (18%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
+ +NL ++ +S + L LD + + +LPSGL S L+
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVL 308
Query: 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV----NLTSLNIG---------- 175
+ S SL +S+ N + G + NL L++
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368
Query: 176 -----KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230
L++L+SL L N + C L L+L + + F LH L
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIE---EQISPTILALVSVSYLSINNNNL 287
++L ++ S L + L GN Q + ++ L + L ++ +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQ 346
S+I K + + L N++T S A +L
Sbjct: 489 SSIDQ--HAFTSLKMMNHVDL----------SHNRLTSSSIEALSHL------------- 523
Query: 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393
K L+L SN I+ +P L + I+L N +
Sbjct: 524 ---------KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 14/169 (8%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTF 127
L L LNLSH+ L S + P L L+ N+F + L +L+
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481
Query: 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187
F LS ++ + + L N+L+ + + +L + L L +
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI---------YLNLAS 532
Query: 188 NSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236
N +S LP L + T+NLR N S F + + L +
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLED 581
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-34
Identities = 86/441 (19%), Positives = 144/441 (32%), Gaps = 52/441 (11%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFR 109
L + L G L L LN++HN + F L LD S N +
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 110 GHCQLPSGLGNFSKLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGAISNG 165
+ L ++ LS I L ++L N S +
Sbjct: 163 SIY--CTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219
Query: 166 VV-NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN--NFRGDLSAYN 222
+ L L + +L + + +L F L NL R+ ++ D
Sbjct: 220 CIQGLAGLEVHRLVLGEF--RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSI 282
F+ L N+ + L + + + L K + + L L S+ L+
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPT---LKLKSLKRLTF 332
Query: 283 NNNNLSNITGAIGILMGCKNLRMLLL--CKIFFHEAIPDENQITISSYAFQNLVVLGIGN 340
+N N + +L L L + F S + +L L +
Sbjct: 333 TSNKGGNAFS----EVDLPSLEFLDLSRNGLSFKGCCSQ------SDFGTTSLKYLDLSF 382
Query: 341 CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP-GWLGNMPNLFYIDLSYNSISGEFPKEF 399
+ + + L++L+ LD + + ++ NL Y+D+S+ F F
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 400 CGLPAL-ALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSI 458
GL +L L + GN Q F+P+ L N L L L L
Sbjct: 442 NGLSSLEVL-----KMAGNSFQE-NFLPDIFTELRN-----LTFL----DLSQCQLEQLS 486
Query: 459 PIEIGNVMFLHVLDLSLNNFS 479
P ++ L VL++S NNF
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFF 507
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 66/439 (15%), Positives = 123/439 (28%), Gaps = 58/439 (13%)
Query: 82 NLSHNHLSFLSPSVPF-LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPD 140
+ + ++PF LD S N R +F +LQ +
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 141 DVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200
+ + L + L N + L+ +L+ L +L+ + +
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLS--------SLQKLVAVETNLASLENFPIGH 122
Query: 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC----MFLTAI 256
L LN+ N + FS L NL +DL +N + L + ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEA 316
LS N + I P + + L++ NN S + + G L + L F
Sbjct: 183 DLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEFR-- 238
Query: 317 IPDENQITISSYAFQNLVVLGIGNCEIK------GQIPTWLGKLKKLQVLDLGSNQITGP 370
+ N A + L L I + I L + L S I
Sbjct: 239 -NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 371 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA---------------D 415
+++L + L L K
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 416 GNQLQLPLFVPETKCALYNQQY-----NKLFSLPPAI---------YLRNNGLNGSIPIE 461
N L ++ + +Y N + ++ +++ L
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 462 I-GNVMFLHVLDLSLNNFS 479
+ ++ L LD+S +
Sbjct: 416 VFLSLRNLIYLDISHTHTR 434
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-33
Identities = 74/444 (16%), Positives = 130/444 (29%), Gaps = 77/444 (17%)
Query: 64 LRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLG 119
++ L+HL L L+ N + L+ L L +G
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIG 121
Query: 120 NFSKLQTFRAGFSYL-SGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLA 178
+ L+ + + S +P+ S +LE + L N++ + L + + L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL- 180
Query: 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 238
SL L N ++ P L L LR N ++ L L L
Sbjct: 181 ---SLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 239 FTGSFPL------TLTSCMFLTAIRLSGNKIE---EQISPTILALVSVSYLSINNNNLSN 289
F L L LT ++ + I L +VS S+ + +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIP 348
+ + L L + + ++L L + KG
Sbjct: 297 VKD----FSYNFGWQHLEL----------VNCKFGQFPTLKLKSLKRLTFTS--NKGGNA 340
Query: 349 TWLGKLKKLQVLDLGSNQIT--GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406
L L+ LDL N ++ G +L Y+DLS+N + F GL L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL- 398
Query: 407 LQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA-----------IYLRNNGLN 455
L Q++ L + + + +
Sbjct: 399 ----------EHLDF--------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 456 GSIPIEIGNVMFLHVLDLSLNNFS 479
+ + L VL ++ N+F
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQ 458
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-32
Identities = 70/370 (18%), Positives = 112/370 (30%), Gaps = 51/370 (13%)
Query: 67 SIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQL----PSG 117
I P K L L L +N S L + FR L S
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 118 LGNFSKLQTFRAGFSYLSGS---IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNI 174
L L +YL I D + ++ SL + +
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER----------VKDF 300
Query: 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
+ L+L F L + L + + N A++ L +L +DL
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN------AFSEVDLPSLEFLDL 354
Query: 235 GNN--NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292
N +F G + L + LS N + +S L L + +L ++NL ++
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDE--------------NQIT--ISSYAFQ---NL 333
+ + +NL L + A N F NL
Sbjct: 414 -FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393
L + C+++ PT L LQVL++ N + +L +D S N I
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 394 EFPKEFCGLP 403
+E P
Sbjct: 533 SKKQELQHFP 542
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-30
Identities = 60/345 (17%), Positives = 116/345 (33%), Gaps = 36/345 (10%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPF--LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
LT++ +L + + L+ + F L + +L
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLT----- 331
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
F+ G SLE + L N LS S + +LK L L N +
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSF------KGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC 250
FL L L+ + +N + F +L NL +D+ + + +F
Sbjct: 386 ITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 251 MFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309
L ++++GN +E P I L ++++L ++ L ++ +L++L +
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNM- 501
Query: 310 KIFFHEAIPDENQIT-ISSYAFQN---LVVLGIGNCEIKGQIPTWLGKL-KKLQVLDLGS 364
N + ++ ++ L VL I L L L+L
Sbjct: 502 ---------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 365 NQITG--PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407
N +L + + + + + P + G+P L+L
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 52/316 (16%), Positives = 92/316 (29%), Gaps = 42/316 (13%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV--PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132
L L L + N V P L LD S N + L+ F+
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG 192
+ + + LE + + L V L NL L +
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-------FLSLRNLIYLDISHTHTRV 435
Query: 193 FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252
++L L + N+F+ + F+ L NL +DL P S
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 253 LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT-GAIGILMGCKNLRMLLLCKI 311
L + +S N + L S+ L + N++ + +L L L
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNL--- 550
Query: 312 FFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPI 371
+N CE + +L +K + L + ++
Sbjct: 551 -------TQNDFA--------------CTCEHQS----FLQWIKDQRQLLVEVERMECAT 585
Query: 372 PGWLGNMPNLFYIDLS 387
P MP + ++++
Sbjct: 586 PSDKQGMP-VLSLNIT 600
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 69/359 (19%), Positives = 130/359 (36%), Gaps = 52/359 (14%)
Query: 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFR 109
A+ L + + +L + L ++ ++ + + L L+ + N
Sbjct: 22 AEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT 79
Query: 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAIS-NGVVN 168
S L N KL + + +L ++ L + +S +
Sbjct: 80 D----ISPLSNLVKLTNLY--IGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTK 133
Query: 169 LTSLN------------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG 216
+ SLN + + L L + + + P + N T+L +L+L N
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE- 190
Query: 217 DLSAYNFSTLHNLHTIDLGNNNFTGSFPL-TLTSCMFLTAIRLSGNKIEEQISPTILALV 275
D+S ++L +LH N T P+ +T L ++++ NKI + + L
Sbjct: 191 DIS--PLASLTSLHYFTAYVNQITDITPVANMTR---LNSLKIGNNKITD--LSPLANLS 243
Query: 276 SVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYA-FQNL 333
+++L I N +S+I + L+ML + NQI+ IS L
Sbjct: 244 QLTWLEIGTNQISDINA----VKDLTKLKMLNV----------GSNQISDISVLNNLSQL 289
Query: 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
L + N ++ + +G L L L L N IT P L ++ + D + I
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 77/337 (22%), Positives = 139/337 (41%), Gaps = 48/337 (14%)
Query: 74 KLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
L L ++ + + ++ L + G+ + L+
Sbjct: 20 DLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVAS----IQGIEYLTNLEYLNLNG 75
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
+ ++ P +S L ++ + N+++ IS + L NL+ L L+ +++S
Sbjct: 76 NQITDISP--LSNLVKLTNLYIGTNKITD-IS---------ALQNLTNLRELYLNEDNIS 123
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSC 250
P L N T + +LNL N+ DLS S + L+ + + + P+ LT
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTPIANLTD- 178
Query: 251 MFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310
L ++ L+ N+IE+ ISP + +L S+ Y + N +++IT + L L +
Sbjct: 179 --LYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKI-- 228
Query: 311 IFFHEAIPDENQITISSY--AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368
N+IT S L L IG +I I + L KL++L++GSNQI+
Sbjct: 229 --------GNNKITDLSPLANLSQLTWLEIGTNQISD-INA-VKDLTKLKMLNVGSNQIS 278
Query: 369 GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L N+ L + L+ N + E + GL L
Sbjct: 279 DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 74/357 (20%), Positives = 131/357 (36%), Gaps = 77/357 (21%)
Query: 146 ASLEDISLPVNQLSGAIS-NGVVNLTSLN-----------IGKLANLKSLKLHTNSLSGF 193
A L ++ ++ + ++T L I L NL+ L L+ N ++
Sbjct: 22 AEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDI 81
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMF 252
P L N L L + N D+SA L NL + L +N + PL LT
Sbjct: 82 SP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISPLANLTK--- 133
Query: 253 LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF 312
+ ++ L N +SP + + ++YL++ + + ++T + +L L L
Sbjct: 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSL---- 184
Query: 313 FHEAIPDENQITISS--YAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370
+ NQI S + +L +I P + + +L L +G+N+IT
Sbjct: 185 ------NYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL 236
Query: 371 IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKC 430
P L N+ L ++++ N IS L L L +
Sbjct: 237 SP--LANLSQLTWLEIGTNQISD--INAVKDLTKL-----------KMLNV--------- 272
Query: 431 ALYNQQYNKLFSLPP--------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
N++ + +++L NN L IG + L L LS N+ +
Sbjct: 273 -----GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 52/310 (16%), Positives = 105/310 (33%), Gaps = 65/310 (20%)
Query: 180 LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
+L ++ P + I L+ + + L ++ + +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56
Query: 240 TGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMG 299
+ L + L+GN+I + ISP + LV ++ L I N +++I+ L
Sbjct: 57 ASIQG--IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDISA----LQN 108
Query: 300 CKNLRMLLLCKIFFHEAIPDENQITISSY--AFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357
NLR L L +E+ I+ S + L +G + L + L
Sbjct: 109 LTNLRELYL----------NEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGL 157
Query: 358 QVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGN 417
L + +++ P + N+ +L+ + L+YN I L +L +
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSL-----------H 202
Query: 418 QLQLPLFVPETKCALYNQQYNKLFSLPP--------AIYLRNNGLNGSIPIEIGNVMFLH 469
N++ + P ++ + NN + P + N+ L
Sbjct: 203 YFTA--------------YVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLT 246
Query: 470 VLDLSLNNFS 479
L++ N S
Sbjct: 247 WLEIGTNQIS 256
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 28/228 (12%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRG 110
++ L L + P +T L +L ++ + + ++P ++ L L ++N
Sbjct: 133 KMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED 191
Query: 111 HCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAIS-NGVVNL 169
S L + + L F A + ++ P V+ L + + N+++ + L
Sbjct: 192 ----ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQL 245
Query: 170 TSLN-----------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDL 218
T L + L LK L + +N +S L N + L +L L NN G+
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLN-NNQLGNE 302
Query: 219 SAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEE 265
L NL T+ L N+ T PL L+ + + + I++
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRPLASLSK---MDSADFANQVIKK 347
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-30
Identities = 74/435 (17%), Positives = 127/435 (29%), Gaps = 78/435 (17%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV--------PFLSILDFSHNYFRGHCQLPSGLGNFSKL 124
LT+L H++LS+N++ ++ + LD S N + KL
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID---FIQDQAFQGIKL 206
Query: 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLK 184
++ S +I + L V++L NL + L +
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLA----GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262
Query: 185 LHTNSLSGF-----LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
+ L+ N+ ++L + + + ++ +
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQL 319
Query: 240 TGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMG 299
L L L ++ L+ NK IS +AL S+SYL ++ N LS +G
Sbjct: 320 KQFPTLDLPF---LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQ---NLVVLGIGNCEIKGQIPTW-LGKLK 355
+LR L L N I S F L L + +K L+
Sbjct: 375 TNSLRHLDLS----------FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGLPALALQEAKNRA 414
KL LD+ G + +L + ++ NS F L
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL--------- 475
Query: 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAI----------YLRNNGLNGSIPIEIGN 464
L L +L + + + +N L
Sbjct: 476 --TFLDL--------------SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 465 VMFLHVLDLSLNNFS 479
+ L LD S N
Sbjct: 520 LYSLSTLDCSFNRIE 534
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 8e-27
Identities = 60/363 (16%), Positives = 103/363 (28%), Gaps = 34/363 (9%)
Query: 67 SIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQL----PSG 117
I + L L L N S L + F+ L PS
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 118 LGNFSKLQTFRAGFSY--LSGSIPDDVSAAASLEDISLPVNQLSGAISN----------- 164
+ + +Y A++ +SL +
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314
Query: 165 GVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNF 223
L L LKSL L N S + +L L+L N +Y+
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSD 372
Query: 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSI 282
++L +DL N L + + ++ + L + YL I
Sbjct: 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 283 NNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCE 342
+ N GI +G +L L + F + NL L + C+
Sbjct: 432 SYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSN-----VFANTTNLTFLDLSKCQ 484
Query: 343 IKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402
++ L +LQ+L++ N + + +L +D S+N I
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544
Query: 403 PAL 405
+L
Sbjct: 545 KSL 547
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-26
Identities = 52/321 (16%), Positives = 105/321 (32%), Gaps = 49/321 (15%)
Query: 75 LTHLCHLNLSHNHLSFLSPSVPF--LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132
L ++ ++L+ + +L L + Q P+ + L++ +
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK---QFPTL--DLPFLKSLT--LT 336
Query: 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG 192
GSI A SL + L N LS S + +L+ L L N
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSF------SGCCSYSDLGTNSLRHLDLSFNGAII 390
Query: 193 FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252
+ M L L+ + + + F +L L +D+ N F
Sbjct: 391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 253 LTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
L ++++GN ++ + A ++++L ++ L I+ G+ L++L +
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW--GVFDTLHRLQLLNM--- 504
Query: 312 FFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPI 371
N + + +L L LD N+I
Sbjct: 505 -------SHNNLL--------------------FLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 372 PGWLGNMPNLFYIDLSYNSIS 392
+L + +L+ NS++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-25
Identities = 69/455 (15%), Positives = 125/455 (27%), Gaps = 60/455 (13%)
Query: 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSPSVP-FLSILDFSHNYFRGHCQLPSGLGNFSKL 124
GS+ P + ++ LS + +P +D S N + NFS+L
Sbjct: 2 GSLNPCIEVVPNI-TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKI--LKSYSFSNFSEL 58
Query: 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLK 184
Q + L ++ L N + + + L +L++L
Sbjct: 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--------FSPGSFSGLTSLENLV 110
Query: 185 LHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP 244
L+ + L LN+ N FS L NL +DL N
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 245 LTLTS----CMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGC 300
L ++ +S N I + I + + L++ N S+ L
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMK-TCLQNL 228
Query: 301 KNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNC-----EIKGQIPTWLGKL 354
L + L DE + + L + I L
Sbjct: 229 AGLHVHRLI----LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 355 KKLQVLDLGSNQITGPIPGW-------------------LGNMPNLFYIDLSYNSISGEF 395
+ + L I ++P L + L+ N S F
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF 344
Query: 396 PKEFCGLPALA-LQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAI------- 447
LP+L+ L ++N + + + +N +
Sbjct: 345 K--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402
Query: 448 --YLRNNGLNGSIPIE-IGNVMFLHVLDLSLNNFS 479
+++ L ++ L LD+S N
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128
L L +L++S+ + + L+ L + N F+ + L + N + L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLD 479
Query: 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
L L+ +++ N L L S + +L +L +L N
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF--------LDSSHYNQLYSLSTLDCSFN 531
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236
+ +L NL N+ F L N
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVN 579
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 92/440 (20%), Positives = 158/440 (35%), Gaps = 69/440 (15%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRG 110
QVT L G+ L +L +N S+N L+ ++P ++ L + ++N
Sbjct: 47 QVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 111 HCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAIS-NGVVNL 169
+ L N + L + ++ P + +L + L N +S + +G+ +L
Sbjct: 105 ----ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSL 158
Query: 170 TSLN----------IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLS 219
L+ + L L+ L + +N +S L TNL +L N D++
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT 215
Query: 220 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279
L NL + L N TL S LT + L+ N+I + L ++
Sbjct: 216 --PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTE 269
Query: 280 LSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSY--AFQNLVVLG 337
L + N +SNI+ L G L L L +ENQ+ S +NL L
Sbjct: 270 LKLGANQISNISP----LAGLTALTNLEL----------NENQLEDISPISNLKNLTYLT 315
Query: 338 IGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397
+ I P + L KLQ L +N+++ L N+ N+ ++ +N IS
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD--LT 369
Query: 398 EFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGS 457
L + L + + Y S+P + L
Sbjct: 370 PLANLTRITQ---------------LGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--I 412
Query: 458 IPIEIGNVMFLHVLDLSLNN 477
P I + D++ N
Sbjct: 413 APATISDGGSYTEPDITWNL 432
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 78/336 (23%), Positives = 122/336 (36%), Gaps = 50/336 (14%)
Query: 74 KLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
L L +++ + ++ L + G+ + L
Sbjct: 22 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS----IDGVEYLNNLTQINFSN 77
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
+ L+ P + L DI + NQ++ + L NL L L N ++
Sbjct: 78 NQLTDITP--LKNLTKLVDILMNNNQIADIT----------PLANLTNLTGLTLFNNQIT 125
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
P L N TNL L L N D+S S L +L + GN + L +
Sbjct: 126 DIDP--LKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLSFGNQV---TDLKPLANLT 177
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
L + +S NK+ + + L ++ L NN +S+IT L NL L L
Sbjct: 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSL--- 228
Query: 312 FFHEAIPDENQIT-ISSYA-FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
+ NQ+ I + A NL L + N +I P L L KL L LG+NQI+
Sbjct: 229 -------NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 370 PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
P L + L ++L+ N + L L
Sbjct: 280 ISP--LAGLTALTNLELNENQLED--ISPISNLKNL 311
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 57/289 (19%), Positives = 96/289 (33%), Gaps = 70/289 (24%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSG 260
+ IT + IN D + L LG N T + T L +T ++
Sbjct: 5 SATITQDTPINQIFTD------TALAEKMKTVLGKTNVTDTVSQTDLDQ---VTTLQADR 55
Query: 261 NKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320
I+ I + L +++ ++ +NN L++IT L L +L+ +
Sbjct: 56 LGIKS-IDG-VEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILM----------NN 99
Query: 321 NQITISSY--AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM 378
NQI + NL L + N +I P L L L L+L SN I+ L +
Sbjct: 100 NQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGL 155
Query: 379 PNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYN 438
+L + K L L +L + N
Sbjct: 156 TSLQQLSFGNQVTD---LKPLANLTTL-----------ERLDI--------------SSN 187
Query: 439 KLFSLPP--------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
K+ + ++ NN ++ P +G + L L L+ N
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 21/170 (12%)
Query: 73 GKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
LT L +L L+ N L +SP ++ L+ L N S + + +KLQ
Sbjct: 284 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFY 339
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
+ +S ++ ++ +S NQ+S + L + L L+ +
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAGHNQISDLT----------PLANLTRITQLGLNDQAW 387
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 240
+ + N+ N N ++ S + D+ N +
Sbjct: 388 TNAPVNYK---ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 66/327 (20%), Positives = 119/327 (36%), Gaps = 35/327 (10%)
Query: 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAG 130
T L+L N + L+ P L L+ + N + G N L+T
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLR 88
Query: 131 FSYLSGSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
+ L IP V + ++L + + N++ + + + L NLKSL++ N
Sbjct: 89 SNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ-------DLYNLKSLEVGDND 139
Query: 190 LSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 249
L + +L L L N + S LH L + L + N +
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198
Query: 250 CMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309
L + +S + ++P L ++++ LSI + NL+ + + LR L L
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHLVYLRFLNL- 255
Query: 310 KIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSN 365
N I+ I L + + ++ P L L+VL++ N
Sbjct: 256 ---------SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 366 QITGPIPGWLGNMPNLFYIDLSYNSIS 392
Q+T ++ NL + L N ++
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 5e-20
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 19/243 (7%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
++ G + L L N + + +L L L N + F+ L
Sbjct: 22 RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNN 286
NL T+ L +N T LT + +S NKI + + L ++ L + +N+
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDND 139
Query: 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCE 342
L I+ G +L L L ++ +T I + A L+VL + +
Sbjct: 140 LVYISH--RAFSGLNSLEQLTL----------EKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Query: 343 IKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402
I +L +L+VL++ + NL + +++ +++ L
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247
Query: 403 PAL 405
L
Sbjct: 248 VYL 250
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 62/345 (17%), Positives = 119/345 (34%), Gaps = 50/345 (14%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRA 129
L + + ++ + L ++ + +L+ + ++ + +Q
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYM 100
Query: 130 GFSYLSGSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
GF+ + +P V L + L N LS ++ G+ L +L + N
Sbjct: 101 GFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGI-------FHNTPKLTTLSMSNN 151
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT 248
+L T+L L L N L+ + S + +L ++ N + TL
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLS-----TLA 202
Query: 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308
+ + + S N I + V ++ L + +NNL++ L+ L + L
Sbjct: 203 IPIAVEELDASHNSI-NVVRGP--VNVELTILKLQHNNLTD----TAWLLNYPGLVEVDL 255
Query: 309 CKIFFHEAIPDENQIT-ISSYAF---QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGS 364
N++ I + F Q L L I N + + + + L+VLDL
Sbjct: 256 ----------SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304
Query: 365 NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409
N + + L + L +NSI L L L
Sbjct: 305 NHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 52/327 (15%), Positives = 102/327 (31%), Gaps = 71/327 (21%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128
+ L + N + +L P V P L++L N LP G+ F
Sbjct: 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS---SLPRGI--FHNTP--- 141
Query: 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
L +S+ N L + +L++L+L +N
Sbjct: 142 ------------------KLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSN 175
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT 248
L+ + +L N+ N + + +D +N+
Sbjct: 176 RLTHVDLSLI---PSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRGPVNV 226
Query: 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308
LT ++L N + + + +L + + ++ N L I + + L L +
Sbjct: 227 E---LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQRLERLYI 279
Query: 309 CKIFFHEAIPDENQITISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSN 365
N++ + Q L VL + + + + + +L+ L L N
Sbjct: 280 ----------SNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328
Query: 366 QITGPIPGWLGNMPNLFYIDLSYNSIS 392
I + L L + LS+N
Sbjct: 329 SIV-TLK--LSTHHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 53/329 (16%), Positives = 107/329 (32%), Gaps = 61/329 (18%)
Query: 80 HLNLSHNHLSFLSPSVPF--LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGS 137
H+++ + F + I+ F ++ R +LP+ L +
Sbjct: 27 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR---KLPAAL--LDSFR------------ 69
Query: 138 IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197
+E ++L Q+ + + ++ L + N++ P
Sbjct: 70 ---------QVELLNLNDLQIE--------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257
N L L L N+ L F L T+ + NNN T + L ++
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
LS N++ + +++ S+ + +++ N LS + I + L
Sbjct: 172 LSSNRLTH-VDLSLIP--SLFHANVSYNLLSTLAIPI-------AVEELDA--------- 212
Query: 318 PDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLG 376
N I + L +L + + + WL L +DL N++ +
Sbjct: 213 -SHNSINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 377 NMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
M L + +S N + +P L
Sbjct: 270 KMQRLERLYISNNRLV-ALNLYGQPIPTL 297
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 63/374 (16%), Positives = 114/374 (30%), Gaps = 85/374 (22%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
I ++ D+ + + + + G ++T L N K + +++
Sbjct: 12 CIDSNLQYDCVFYDVHI--DMQTQDVYFGFEDIT------LNNQKIVTFKNSTMRKLPAA 63
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
L + + LNL ++ Y F+ H + + +G N P + LT +
Sbjct: 64 LLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 257 RLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315
L N + + I ++ LS++NNNL I +L+ L L
Sbjct: 123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQL------- 172
Query: 316 AIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP-- 372
N++T + +L + + + L ++ LD N I +
Sbjct: 173 ---SSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGP 223
Query: 373 ------------------GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414
WL N P L +DLSYN + F + L
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL--------- 274
Query: 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAI---------YLRNNGLNGSIPIEIGNV 465
+L + N+L +L L +N L +
Sbjct: 275 --ERLYI--------------SNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317
Query: 466 MFLHVLDLSLNNFS 479
L L L N+
Sbjct: 318 DRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 19/126 (15%)
Query: 70 PFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQ 125
+ L ++LS+N L + L L S+N L L+
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLK 298
Query: 126 TFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKL 185
++L + + LE++ L N + +L + LK+L L
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-----------IVTLKLSTHHTLKNLTL 346
Query: 186 HTNSLS 191
N
Sbjct: 347 SHNDWD 352
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 48/353 (13%), Positives = 101/353 (28%), Gaps = 55/353 (15%)
Query: 136 GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP 195
GS ++ E++ G L L+ + +
Sbjct: 2 GSSHHHHHHSSGRENLYF----------QGSTALRPY-HDVLSQWQRHYNADRNRWH-SA 49
Query: 196 QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255
N N + +T ++L + FP L
Sbjct: 50 WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108
Query: 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315
+ + + E + T+ + L++ N L + +I LR L +
Sbjct: 109 MTIDAAGLME-LPDTMQQFAGLETLTLARNPLRALPASIA---SLNRLRELSIRACPELT 164
Query: 316 AIPDE---NQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372
+P+ + NL L + I+ +P + L+ L+ L + ++ ++ +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG 222
Query: 373 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCAL 432
+ ++P L +DL + +P F G L L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL------------------------KRL 258
Query: 433 YNQQYNKLFSLPPAI---------YLRNNGLNGSIPIEIGNVMFLHVLDLSLN 476
+ + L +LP I LR +P I + ++ + +
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 3e-20
Identities = 47/326 (14%), Positives = 93/326 (28%), Gaps = 41/326 (12%)
Query: 114 LPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN 173
L + + + + + + + + L L
Sbjct: 28 YHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRALKATAD-------LLE 76
Query: 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 233
+L+L + L P ++L + + +L L T+
Sbjct: 77 DATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLT 133
Query: 234 LGNNNFTGSFPLTLTSCMFLTAIRLSG-NKIEE--------QISPTILALVSVSYLSINN 284
L N + P ++ S L + + ++ E S LV++ L +
Sbjct: 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 285 NNLSNITGAIGILMGCKNLRMLLL--CKIFFHEAIPDENQITISSYAFQNLVVLGIGNCE 342
+ ++ +I L +NL+ L + + A+ I L L + C
Sbjct: 193 TGIRSLPASIANL---QNLKSLKIRNSPL---SALGPA----IHH--LPKLEELDLRGCT 240
Query: 343 IKGQIPTWLGKLKKLQVLDL-GSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401
P G L+ L L + + +P + + L +DL P
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 402 LPALALQEAKNRADGNQLQ-LPLFVP 426
LPA + Q P+ P
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 9e-19
Identities = 66/351 (18%), Positives = 112/351 (31%), Gaps = 36/351 (10%)
Query: 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQ 125
GS + + +L + + L P LS +N R N + Q
Sbjct: 2 GSSHHHHHHSSGRENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQ 59
Query: 126 TFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL--NIGKLANLKSL 183
L + D + A ++L +L L +L++L+ +
Sbjct: 60 IETRTGRALK-ATADLLEDATQPGRVAL---ELRSV------PLPQFPDQAFRLSHLQHM 109
Query: 184 KLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 243
+ L LP + L TL L N R L A + ++L+ L + +
Sbjct: 110 TIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPA-SIASLNRLRELSIRACPELTEL 166
Query: 244 PLTLTSCMF---------LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
P L S L ++RL I + +I L ++ L I N+ LS + AI
Sbjct: 167 PEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAI 225
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
L L L P L L + +C +P + +L
Sbjct: 226 H---HLPKLEELDLRGCTALRNYPPI----FGG--RAPLKRLILKDCSNLLTLPLDIHRL 276
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+L+ LDL +P + +P I + + + PA
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 17/205 (8%)
Query: 276 SVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335
+S + N N + N ++ +A D + V
Sbjct: 31 VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL-KATADL----LEDATQPGRVA 85
Query: 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEF 395
L + + + Q P +L LQ + + + + +P + L + L+ N +
Sbjct: 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-AL 142
Query: 396 PKEFCGLPALALQEAKNRADGNQLQ-LPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGL 454
P L L + +L LP + T + +Q L SL L G+
Sbjct: 143 PASIASLNRL---RELSIRACPELTELPEPLASTDASGEHQGLVNLQSL----RLEWTGI 195
Query: 455 NGSIPIEIGNVMFLHVLDLSLNNFS 479
S+P I N+ L L + + S
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSPLS 219
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 9e-10
Identities = 27/159 (16%), Positives = 47/159 (29%), Gaps = 18/159 (11%)
Query: 59 LPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLP 115
LP+ L +L L L + L S+ L L ++ L
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS---ALG 222
Query: 116 SGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL--N 173
+ + KL+ + P A L+ + L NL +L +
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL----------KDCSNLLTLPLD 272
Query: 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212
I +L L+ L L LP + + + +
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 85/439 (19%), Positives = 135/439 (30%), Gaps = 56/439 (12%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
L L LS N++ ++ S L +L+ Y N L+ G
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLG 81
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
S + PD L ++ L LS A+ L L L L L N +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV------LKDGYFRNLKALTRLDLSKNQI 135
Query: 191 SGF-LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH--NLHTIDLGNNNFTGSFPLTL 247
L +L +++ N + + L L L N+ +
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194
Query: 248 TSC------MFLTAIRLSGNKIEEQISPTILALVSVS------------YLSINNNNLSN 289
C M L + +SGN I+ +S S +N+ +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKG 345
+ ++R L L + ++S F+ +L VL + +I
Sbjct: 255 PDQNTFAGLARSSVRHLDLSH----------GFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 346 QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L LQVL+L N + +P + YIDL N I+ + F L L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364
Query: 406 ALQEAKNRADGNQLQ-LPLFVPETKCALYNQQYNKLFSLPPA---IYLRNNGLNG-SIPI 460
N L + L + L + I+L N L I
Sbjct: 365 QTL----DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 461 EIGNVMFLHVLDLSLNNFS 479
+ V L +L L+ N FS
Sbjct: 421 FLLRVPHLQILILNQNRFS 439
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 71/417 (17%), Positives = 129/417 (30%), Gaps = 68/417 (16%)
Query: 81 LNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAGFSYLSGSIP 139
+L+ + + L S NY R + + +LQ G Y +I
Sbjct: 9 AFYRFCNLTQVPQVLNTTERLLLSFNYIR---TVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 140 DDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFL--PQ 196
+ +L + L +++ L L +L L+L+ LS +
Sbjct: 66 KEAFRNLPNLRILDLGSSKIY--------FLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF--LT 254
+ N L L+L N R +F L++L +ID +N L L+
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177
Query: 255 AIRLSGNKIEEQISPTILAL------VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308
L+ N + ++S + + L ++ N + K+ L+
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 309 CKIFFHEAIPDENQIT-ISSYAFQ-----NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDL 362
A + I F ++ L + + + LK L+VL+L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 363 GSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLP 422
N+I + NL ++LSYN + + F GLP + + L
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV-----------AYIDL- 345
Query: 423 LFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
Q N + + + + L LDL N +
Sbjct: 346 -------------QKNHIAIIQDQTF--------------KFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 3e-21
Identities = 70/392 (17%), Positives = 122/392 (31%), Gaps = 85/392 (21%)
Query: 70 PFTGKLTHLCHLNLSHNHLSFLSP------SVPFLSILDFSHNYFRGHCQLPSGL----- 118
P GKL L ++ S N + + LS + N + G
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 119 -----------GNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV 167
GN + + +S S + A + + + N
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 168 NLTSLNI------------------GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209
L ++ L +LK L L N ++ + NL LNL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISP 269
N +L + NF L + IDL N+ T L + L N +
Sbjct: 322 SYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----- 375
Query: 270 TILALVSVSYLSINNNNLSNIT-------------------GAIGILMGCKNLRMLLLCK 310
TI + S+ + ++ N L + + L+ +L++L+L
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL-- 433
Query: 311 IFFHEAIPDENQITISSYAF-----QNLVVLGIGNCEIKGQIPTWL-----GKLKKLQVL 360
++N+ + S +L L +G ++ T L L LQVL
Sbjct: 434 --------NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485
Query: 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
L N + PG ++ L + L+ N ++
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 6e-19
Identities = 55/358 (15%), Positives = 103/358 (28%), Gaps = 74/358 (20%)
Query: 162 ISNGVVNLTSLNIGK----LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGD 217
+ N+ + L + L L N + L L L
Sbjct: 4 FDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 218 LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE-QISPTILA-LV 275
+ F L NL +DLG++ P L +RL + + + L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 276 SVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ--- 331
+++ L ++ N + ++ +L+ + NQI + + +
Sbjct: 124 ALTRLDLSKNQIRSLYLH-PSFGKLNSLKSIDF----------SSNQIFLVCEHELEPLQ 172
Query: 332 --NLVVLGIGNCEIKGQIPTWLGKLKK------LQVLDLGSNQITGPIPG---------- 373
L + + ++ GK L++LD+ N T I G
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232
Query: 374 --WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCA 431
L ++ +++I F GL +++ L L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH---------LDL---------- 273
Query: 432 LYNQQYNKLFSLPPA----------IYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ +FSL + L N +N + L VL+LS N
Sbjct: 274 ----SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-24
Identities = 58/335 (17%), Positives = 107/335 (31%), Gaps = 61/335 (18%)
Query: 75 LTHLCHLNLSHNHLSFLSPSVP-FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133
LN+ + L+ L +P ++ L N LP+ L+T +
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT---SLPALPPE---LRTLEVSGNQ 92
Query: 134 LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193
L+ S+P L S P+ L S L L + N L+
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTHLPALPS---------------GLCKLWIFGNQLT-S 135
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253
LP L + ++ + S L + NN T S P+ + L
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPS--------ELCKLWAYNNQLT-SLPMLPSG---L 183
Query: 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313
+ +S N++ + L L NN L+++ L+ L++
Sbjct: 184 QELSVSDNQLAS-LPTLPSELYK---LWAYNNRLTSLPALPS------GLKELIV----- 228
Query: 314 HEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPG 373
N++T L L + + +P L L + NQ+T +P
Sbjct: 229 -----SGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLTR-LPE 278
Query: 374 WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408
L ++ + ++L N +S + + +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 6e-19
Identities = 57/319 (17%), Positives = 103/319 (32%), Gaps = 60/319 (18%)
Query: 169 LTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228
+ + L + + L+ LP L ++ TL + NN L +
Sbjct: 31 VQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLP----ALPPE 82
Query: 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288
L T+++ N T S P+ + L+ + S + L I N L+
Sbjct: 83 LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT 134
Query: 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP 348
++ L+ L + +NQ+ L L N ++ +P
Sbjct: 135 SLPVLPP------GLQELSV----------SDNQLASLPALPSELCKLWAYNNQLT-SLP 177
Query: 349 TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408
L++L + NQ+ +P + L N ++ P GL L +
Sbjct: 178 MLPSGLQEL---SVSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLPALPSGLKELIV- 228
Query: 409 EAKNRADGNQLQLPLFVPETKCALY--NQQYNKLFSLPPAI------YLRNNGLNGSIPI 460
GN+L +P L N+L SLP + N L +P
Sbjct: 229 ------SGNRLT---SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPE 278
Query: 461 EIGNVMFLHVLDLSLNNFS 479
+ ++ ++L N S
Sbjct: 279 SLIHLSSETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 6e-16
Identities = 45/221 (20%), Positives = 73/221 (33%), Gaps = 31/221 (14%)
Query: 75 LTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYL 134
+ LC L + N L+ L P L L S N LP+ KL + + L
Sbjct: 120 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA---SLPALPSELCKLWAYNNQLTSL 176
Query: 135 SGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK---------LANLKSLKL 185
L+++S+ NQL+ ++ L L + LK L +
Sbjct: 177 PMLPS-------GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIV 228
Query: 186 HTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL 245
N L+ LP + L L + N L L ++ + N T P
Sbjct: 229 SGNRLTS-LPVLP---SELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPE 278
Query: 246 TLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286
+L T + L GN + E+ + + S +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITS-APGYSGPII 318
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 7e-15
Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 37/231 (16%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132
L L + HL L L L N LP +L +
Sbjct: 101 PGLLELSIFSNPLTHLPALPSG---LCKLWIFGNQLT---SLPVLPPGLQELSVSDNQLA 154
Query: 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK---------LANLKSL 183
L + L + NQL+ ++ L L++ + L L
Sbjct: 155 SLPALP-------SELCKLWAYNNQLT-SLPMLPSGLQELSVSDNQLASLPTLPSELYKL 206
Query: 184 KLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 243
+ N L+ LP LI R+ + L + + N T S
Sbjct: 207 WAYNNRLT-SLPALPSGLKELIVSGNRLTSL--------PVLPSELKELMVSGNRLT-SL 256
Query: 244 PLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
P+ + L ++ + N++ + +++ L S + +++ N LS T
Sbjct: 257 PMLPSG---LLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQA 303
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-24
Identities = 67/357 (18%), Positives = 113/357 (31%), Gaps = 47/357 (13%)
Query: 67 SIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQLPS----- 116
I P K L L L +N S L + FR L
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 117 --GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGV--VNLTSL 172
GL N + + A Y I D + ++ SL + + + L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHL 309
Query: 173 NI----------GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAY 221
+ KL +LK L +N ++ +L L+L N +
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 222 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYL 280
+ +L +DL N + L + + +++ ++ L ++ YL
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT--ISSYAFQ---NLVV 335
I++ + GI G +L +L + N F NL
Sbjct: 427 DISHTHTRVAF--NGIFNGLSSLEVLKM----------AGNSFQENFLPDIFTELRNLTF 474
Query: 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
L + C+++ PT L LQVL++ SNQ+ G + +L I L N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 3e-21
Identities = 73/434 (16%), Positives = 129/434 (29%), Gaps = 77/434 (17%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFR 128
L+HL L L+ N + L+ L L L + +G+ L+
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELN 130
Query: 129 AGFSYL-SGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187
+ + S +P+ S +LE + L N++ + L + + L SL L
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL----SLDLSL 186
Query: 188 NSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL------GNNNFTG 241
N ++ P L L LR N ++ L L L N
Sbjct: 187 NPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 242 SFPLTLTSCMFLTAIRLSGNKIE---EQISPTILALVSVSYLSINNNNLSNITGAIGILM 298
L LT ++ + I L +VS S+ + + +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD----FS 301
Query: 299 GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358
+ L L F + + ++L L + + L L+
Sbjct: 302 YNFGWQHLELVNCKFGQ---------FPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 350
Query: 359 VLDLGSNQIT--GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADG 416
LDL N ++ G +L Y+DLS+N + F GL L
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE---------- 399
Query: 417 NQLQLPLFVPETKCALYNQQYNKLFSLPPA-----------IYLRNNGLNGSIPIEIGNV 465
L Q++ L + + + + + +
Sbjct: 400 -HLDF--------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 466 MFLHVLDLSLNNFS 479
L VL ++ N+F
Sbjct: 445 SSLEVLKMAGNSFQ 458
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 8e-21
Identities = 81/461 (17%), Positives = 135/461 (29%), Gaps = 92/461 (19%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFR 109
L + L G L L LN++HN + F L LD S N +
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 110 GHCQLPSGLGNFSKLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGAISNG 165
+ L ++ LS I L ++L N S +
Sbjct: 163 SIY--CTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219
Query: 166 VV-NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN--NFRGDLSAYN 222
+ L L + +L + + +L F L NL R+ ++ D
Sbjct: 220 CIQGLAGLEVHRLVLGEFR--NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 223 FSTLHNLHTIDLGNNNFTGSFP---------LTLTSCMF----------LTAIRLSGNKI 263
F+ L N+ + L + L L +C F L + + NK
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337
Query: 264 EEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQI 323
+ + + L S+ +L ++ N LS G +L+ L L N +
Sbjct: 338 GN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL----------SFNGV 385
Query: 324 TISSYAF---QNLVVLGIGNCEIKGQIPTW-LGKLKKLQVLDLGSNQITGPIPGWLGNMP 379
S F + L L + +K L+ L LD+ G +
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 380 NLFYIDLSYNSISGEFPKE-FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYN 438
+L + ++ NS F + F L L L L
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNL-----------TFLDL--------------SQC 480
Query: 439 KLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+L L P ++ L VL+++ N
Sbjct: 481 QLEQLSPTA--------------FNSLSSLQVLNMASNQLK 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 58/308 (18%), Positives = 94/308 (30%), Gaps = 45/308 (14%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
+ L+L N R L +Y+F + L +DL S L+ + L+GN
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 262 KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDEN 321
I+ L S+ L NL+++ + K L+ L + N
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNV----------AHN 134
Query: 322 QIT--ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQV----LDLGSNQITGPIP 372
I F NL L + + +I+ T L L ++ + LDL N + I
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQ 193
Query: 373 GWLGNMPNLFYIDLSYNSISGEFPKEFC----GLPALALQEAKNRADGNQLQLPLFVPET 428
L + L N S K GL L + R +GN + E
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 429 KCALY----NQQYNKLFSLPPA-----------IYLRNNGLNGSIPIEIGNVM--FLHVL 471
C L Y + L + + + N L ++
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELV 312
Query: 472 DLSLNNFS 479
+ F
Sbjct: 313 NCKFGQFP 320
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 12/177 (6%)
Query: 74 KLTHLCHLNLSHNHLSFLS---PSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
T L +L+LS N + +S + L LDF H+ + S + L
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDIS 429
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
++ + + +SLE + + N + +L NL L L L
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQL 482
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTL 247
P + ++L LN+ N + + F L +L I L N + S P
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 67 SIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQLPSG-LGN 120
++ L L HL+ H++L +S F L LD SH + R +G
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV---AFNGIFNG 443
Query: 121 FSKLQTFRAGFSYLSGSIPDDVSAA-ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLAN 179
S L+ + + + D+ +L + L QL +S L++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA-------FNSLSS 495
Query: 180 LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGD 217
L+ L + +N L T+L + L N +
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-24
Identities = 63/345 (18%), Positives = 109/345 (31%), Gaps = 70/345 (20%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128
+ LNL+ + + + L N R LP + F +
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHV--FQNVP--- 123
Query: 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
L + L N LS ++ G+ L +L + N
Sbjct: 124 ------------------LLTVLVLERNDLS-SLPRGI-------FHNTPKLTTLSMSNN 157
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT 248
+L T+L L L N L+ + S + +L ++ N + TL
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLS-----TLA 208
Query: 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308
+ + + S N I + V ++ L + +NNL++ L+ L + L
Sbjct: 209 IPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTD----TAWLLNYPGLVEVDL 261
Query: 309 CKIFFHEAIPDENQIT-ISSYAF---QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGS 364
N++ I + F Q L L I N + + + + L+VLDL
Sbjct: 262 ----------SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310
Query: 365 NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409
N + + L + L +NSI L L L
Sbjct: 311 NHLLH-VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 2e-21
Identities = 65/412 (15%), Positives = 128/412 (31%), Gaps = 98/412 (23%)
Query: 80 HLNLSHNHLSFLSPSVPF--LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGS 137
H+++ + F + I+ F ++ R +LP+ L +
Sbjct: 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR---KLPAAL--LDSFR------------ 75
Query: 138 IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197
+E ++L Q+ + + ++ L + N++ P
Sbjct: 76 ---------QVELLNLNDLQIE--------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257
N L L L N+ L F L T+ + NNN T + L ++
Sbjct: 119 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
LS N++ + +++ S+ + +++ N LS + I + L
Sbjct: 178 LSSNRLTH-VDLSLIP--SLFHANVSYNLLSTLAIPI-------AVEELDA--------- 218
Query: 318 PDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLG 376
N I + L +L + + + WL L +DL N++ +
Sbjct: 219 -SHNSINVVRGPVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFV 275
Query: 377 NMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQ 436
M L + +S N + +P L L L
Sbjct: 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLK-----------VLDL--------------S 309
Query: 437 YNKLFSLPPAI---------YLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+N L + YL +N + +++ L L LS N++
Sbjct: 310 HNHLLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 5e-20
Identities = 52/327 (15%), Positives = 102/327 (31%), Gaps = 71/327 (21%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128
+ L + N + +L P V P L++L N LP G+ F
Sbjct: 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS---SLPRGI--FHNTP--- 147
Query: 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
L +S+ N L + +L++L+L +N
Sbjct: 148 ------------------KLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSN 181
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT 248
L+ + +L N+ N + + +D +N+
Sbjct: 182 RLTHVDLSLI---PSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRGPVNV 232
Query: 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308
LT ++L N + + + +L + + ++ N L I + + L L +
Sbjct: 233 E---LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQRLERLYI 285
Query: 309 CKIFFHEAIPDENQITISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSN 365
N++ + Q L VL + + + + + +L+ L L N
Sbjct: 286 ----------SNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334
Query: 366 QITGPIPGWLGNMPNLFYIDLSYNSIS 392
I + L L + LS+N
Sbjct: 335 SIV-TLK--LSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 52/324 (16%), Positives = 104/324 (32%), Gaps = 46/324 (14%)
Query: 172 LNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 231
N+ + + + + + N + + + R L A + +
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVEL 79
Query: 232 IDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNI 290
++L + + + + N I + P + + ++ L + N+LS++
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSL 138
Query: 291 TGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKGQ 346
GI L L + N + I FQ +L L + + +
Sbjct: 139 PR--GIFHNTPKLTTLSM----------SNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 185
Query: 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406
+ L + L ++ N ++ L + +D S+NSI+ L L
Sbjct: 186 VD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILK 238
Query: 407 LQEAKNRADGNQL-QLPLFVPETKCALYNQQYNKLFSLPPAI----------YLRNNGLN 455
LQ N L + + YN+L + Y+ NN L
Sbjct: 239 LQ-------HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 456 GSIPIEIGNVMFLHVLDLSLNNFS 479
++ + + L VLDLS N+
Sbjct: 292 -ALNLYGQPIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 15/106 (14%), Positives = 35/106 (33%)
Query: 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQV 359
NL+ + + + N ++ N ++ L +++++
Sbjct: 20 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79
Query: 360 LDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L+L QI + + + +N+I P F +P L
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 19/126 (15%)
Query: 70 PFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQ 125
+ L ++LS+N L + L L S+N L L+
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLK 304
Query: 126 TFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKL 185
++L + + LE++ L N + +L + LK+L L
Sbjct: 305 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-----------IVTLKLSTHHTLKNLTL 352
Query: 186 HTNSLS 191
N
Sbjct: 353 SHNDWD 358
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 87/412 (21%), Positives = 128/412 (31%), Gaps = 79/412 (19%)
Query: 75 LTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYL 134
L L++ LS L P L L S N +LP + L L
Sbjct: 70 DRQAHELELNNLGLSSLPELPPHLESLVASCNSLT---ELPELPQSLKSLLVDNNNLKAL 126
Query: 135 SGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL-NIGKLANLKSLKLHTNSLSGF 193
S P LE + + NQ L L + + LK + + NSL
Sbjct: 127 SDLPP-------LLEYLGVSNNQ-----------LEKLPELQNSSFLKIIDVDNNSLK-K 167
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253
LP +L + N +L L L I NN+ P S L
Sbjct: 168 LPDLP---PSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYADNNSLK-KLPDLPLS---L 217
Query: 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313
+I N +EE P + L ++ + +NN L + +L L +
Sbjct: 218 ESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLPDLPP------SLEALNV----- 264
Query: 314 HEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPG 373
+N +T Q+L L + + L L+ SN+I +
Sbjct: 265 -----RDNYLTDLPELPQSLTFLDVSENIFS-GLSELPPNLYY---LNASSNEIRS-LC- 313
Query: 374 WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALY 433
P+L +++S N + E P L L N L VPE L
Sbjct: 314 --DLPPSLEELNVSNNKLI-ELPALPPRLERLIA-------SFNHLA---EVPELPQNLK 360
Query: 434 --NQQYNKLFSLPPAIY----LRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ +YN L P LR N +P N L L + N
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN---LKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 72/424 (16%), Positives = 131/424 (30%), Gaps = 79/424 (18%)
Query: 75 LTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYL 134
HL L S N L+ L L L +N + LP L+ + L
Sbjct: 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQL 143
Query: 135 SGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-----------IGKLANLKSL 183
+P ++ ++ L+ I + N L + + +L + + L L ++
Sbjct: 144 E-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAI 200
Query: 184 KLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF 243
NSL LP ++ +++ N + L L TI NN +
Sbjct: 201 YADNNSLK-KLPDLPLSLESIVAGNNILEELP------ELQNLPFLTTIYADNNLLK-TL 252
Query: 244 PLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303
P S L + E S+++L ++ N S ++ NL
Sbjct: 253 PDLPPSLEALNVRDNYLTDLPELPQ-------SLTFLDVSENIFSGLSELPP------NL 299
Query: 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLG 363
L N+I +L L + N ++ ++P +L++ L
Sbjct: 300 YYLNA----------SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIAS 345
Query: 364 SNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPL 423
N + +P NL + + YN + EFP + L + + L
Sbjct: 346 FNHLAE-VPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM--------NSHLA--- 389
Query: 424 FVPETKCALY--NQQYNKLFSLPPAI------YLRNNGLNGSIPIEIGNVMFLHVLDLSL 475
VPE L + + N L P + + + L
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Query: 476 NNFS 479
++
Sbjct: 450 HHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 5e-19
Identities = 64/380 (16%), Positives = 125/380 (32%), Gaps = 67/380 (17%)
Query: 113 QLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSL 172
++P N + +S + P + E + V++L + L
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAP-----PGNGEQREMAVSRLRDCLDR---QAHEL 76
Query: 173 NIGK---------LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
+ +L+SL NSL+ LP+ + +L+ N +
Sbjct: 77 ELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-------- 127
Query: 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSIN 283
L + + NN P L + FL I + N +++ + +L +++
Sbjct: 128 DLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLE---FIAAG 181
Query: 284 NNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343
NN L + L L + D N + +L + GN +
Sbjct: 182 NNQLEELPE----LQNLPFLTAIYA----------DNNSLKKLPDLPLSLESIVAGNNIL 227
Query: 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP 403
+ ++P L L L + +N + +P +L +++ N ++ + P+ L
Sbjct: 228 E-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLT-DLPELPQSLT 280
Query: 404 ALALQEAKNRADGNQLQLPLFVPE-TKCALYNQQYNKLFSLPPAI---YLRNNGLNGSIP 459
L + E L P + + L LPP++ + NN L +P
Sbjct: 281 FLDVSENIFS------GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 333
Query: 460 IEIGNVMFLHVLDLSLNNFS 479
L L S N+ +
Sbjct: 334 ALPPR---LERLIASFNHLA 350
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 4e-18
Identities = 57/350 (16%), Positives = 106/350 (30%), Gaps = 74/350 (21%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132
+ L +++ +N L L P L + +N +LP L N L A +
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE---ELPE-LQNLPFLTAIYADNN 205
Query: 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-IGKLANLKSLKLHTNSLS 191
L +PD SLE I N L L + L L ++ N L
Sbjct: 206 SLK-KLPDLPL---SLESIVAGNNI-----------LEELPELQNLPFLTTIYADNNLLK 250
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
LP + L + + + +L +D+ N F+ +
Sbjct: 251 T-LPDLPPSLEALNVRDNYLTDLP--------ELPQSLTFLDVSENIFS-GLSELPPN-- 298
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
L + S N+I + +L L+++NN L + L L+
Sbjct: 299 -LYYLNASSNEIRS-LCDLPPSLEE---LNVSNNKLIELPALPP------RLERLIA--- 344
Query: 312 FFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLK---------------- 355
N + QNL L + ++ + P ++
Sbjct: 345 -------SFNHLAEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQ 396
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L+ L + +N + P ++ +L ++ + + L
Sbjct: 397 NLKQLHVETNPLRE-FPDIPESVEDL---RMNSERVVDPYEFAHETTDKL 442
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 58/323 (17%), Positives = 99/323 (30%), Gaps = 58/323 (17%)
Query: 70 PFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
P L L + +N L L L + +N +LP L N L T A
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE---ELPE-LQNLPFLTTIYA 244
Query: 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
+ L ++PD SLE +++ N L+ +L L +L L + N
Sbjct: 245 DNNLLK-TLPDLPP---SLEALNVRDNYLT--------DLPEL----PQSLTFLDVSENI 288
Query: 190 LSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 249
SG L + N L + I + +L +++ NN P
Sbjct: 289 FSG-LSELPPNLYYLNASSNEIRSL--------CDLPPSLEELNVSNNKLI-ELPALPPR 338
Query: 250 CMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309
L + S N + E + L L + N L ++LRM
Sbjct: 339 ---LERLIASFNHLAE-VPELPQNLKQ---LHVEYNPLREFPDIPE---SVEDLRMN--- 385
Query: 310 KIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
+ + QNL L + ++ + P ++ L + S ++
Sbjct: 386 -----------SHLAEVPELPQNLKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVD 430
Query: 370 PIPGWLGNMPNLFYIDLSYNSIS 392
P L ++
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 41/240 (17%), Positives = 76/240 (31%), Gaps = 36/240 (15%)
Query: 70 PFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
P L L + +N L L P L L+ NY LP + + L
Sbjct: 231 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT---DLPELPQSLTFLDVSEN 287
Query: 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK---------LANL 180
FS LS P +L ++ N++ ++ + +L LN+ L
Sbjct: 288 IFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPPRL 339
Query: 181 KSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNF------RGDLSAYNFST-----LHNL 229
+ L N L+ +P+ N L + F DL + NL
Sbjct: 340 ERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398
Query: 230 HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289
+ + N FP S + +R++ ++ + + +++ +
Sbjct: 399 KQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 5e-22
Identities = 68/437 (15%), Positives = 139/437 (31%), Gaps = 55/437 (12%)
Query: 78 LCHLNLSHNHLSFLSPSVP-FLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAGFSYLS 135
+ + + + + LD S N + G L + LQ S ++
Sbjct: 7 SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT---YIGHGDLRACANLQVLILKSSRIN 63
Query: 136 GSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF- 193
+I D + SLE + L N LS +L+S G L++LK L L N
Sbjct: 64 -TIEGDAFYSLGSLEHLDLSDNHLS--------SLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253
+ N TNL TL + ++ +F+ L +L+ +++ + +L S +
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174
Query: 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI-TGAIGILMGCKNLRMLLLCKIF 312
+ L ++ + L SV YL + + NL+ + + ++ L
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234
Query: 313 FHEAIPDENQITISSYAFQNLVVLGIGNCEIKG---------QIPTWLGKLK--KLQVLD 361
+ N++ L + +C + G + + LGK++ ++ L
Sbjct: 235 LTD--ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 362 LGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL-ALQEAKNRADGNQLQ 420
+ + + + + I + + + L +L L N +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL-----DLSENLMV 347
Query: 421 LPLFVPETKCALYNQ------QYNKLFSLPPA------------IYLRNNGLNGSIPIEI 462
+ N L S+ + + N + +P
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406
Query: 463 GNVMFLHVLDLSLNNFS 479
+ L+LS
Sbjct: 407 QWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 55/358 (15%), Positives = 114/358 (31%), Gaps = 40/358 (11%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF------------LSI 100
+ HL L + F L+ + +L L +L+ S
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232
Query: 101 LDFSHNYFRGHCQLPSGLGNFSKLQTFR---AGFSYLSGSIPDDVSAAASLEDISLPVNQ 157
+ F +L + S+++ G + S D VS +E +++
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292
Query: 158 LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR-- 215
+ + S L +K + + + + F + +L L+L N
Sbjct: 293 IP---QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 216 GDLSAYNFSTLHNLHTIDLGNNNFT--GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA 273
++ +L T+ L N+ L + LT++ +S N + +
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW 408
Query: 274 LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333
+ +L++++ + + I + L +L + N + S L
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCI-----PQTLEVLDV----------SNNNLDSFSLFLPRL 453
Query: 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391
L I ++K +P L V+ + NQ+ G + +L I L N
Sbjct: 454 QELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 75/445 (16%), Positives = 136/445 (30%), Gaps = 69/445 (15%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
L L HL+LS NHLS LS S L L+ N ++ + S N + LQT R
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRI 130
Query: 130 GFSYLSGSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
G I + SL ++ + L + + + ++ L LH +
Sbjct: 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQS-------LKSIRDIHHLTLHLS 182
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRG----------DLSAYNFSTLHNLHTIDLGNNN 238
+ L F +++ L LR N S D N
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 239 FTGSF-------PLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
+ C + ++ + + V++ L I L
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 292 GAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKGQI 347
+ + ++ + + + +++ + Q +L L + + +
Sbjct: 303 S--TVYSLLEKVKRITV----------ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 348 ---PTWLGKLKKLQVLDLGSNQIT--GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402
G LQ L L N + L + NL +D+S N+ P
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409
Query: 403 PALA-LQEAKNRADGNQLQ-LPLFVPETKCALYNQQYNKLFSLPP------AIYLRNNGL 454
+ L ++ + +P+T L N L S +Y+ N L
Sbjct: 410 EKMRFL-----NLSSTGIRVVKTCIPQTLEVLDVS-NNNLDSFSLFLPRLQELYISRNKL 463
Query: 455 NGSIPIEIGNVMFLHVLDLSLNNFS 479
++P + L V+ +S N
Sbjct: 464 K-TLP-DASLFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-19
Identities = 71/438 (16%), Positives = 131/438 (29%), Gaps = 55/438 (12%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127
G L+ L +LNL N L + F L L + + + L
Sbjct: 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNEL 153
Query: 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187
L + + + ++L +++ + + L+S+ +L + +
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213
Query: 188 NSLSGFLPQFLMNCTNLITLNLRINNFRG---------DLSAYNFSTLHNLHTIDLGNNN 238
+ L M L +F +LS F D +
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273
Query: 239 FTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILM 298
L + + + + + +S L V +++ N+ + +
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC--SFSQ 331
Query: 299 GCKNLRMLLLCKIFFHEAIPDENQIT-------ISSYAFQNLVVLGIGNCEIK--GQIPT 349
K+L L L EN + A+ +L L + ++ +
Sbjct: 332 HLKSLEFLDL----------SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 350 WLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409
L LK L LD+ N P+P + +++LS I L L +
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS- 439
Query: 410 AKNRADGNQLQ-LPLFVPETKCALYNQQYNKLFSLPPA--------IYLRNNGLNGSIPI 460
N L LF+P + LY NKL +LP A + + N L
Sbjct: 440 ------NNNLDSFSLFLPRLQ-ELY-ISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDG 491
Query: 461 EIGNVMFLHVLDLSLNNF 478
+ L + L N +
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 71 FTGKLTHLCHLNLSHNHLSFLSPSV------PFLSILDFSHNYFRGHCQLPSGLGNFSKL 124
G L L LS NHL + + L+ LD S N F +P K+
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PMPDSCQWPEKM 412
Query: 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNI---------- 174
+ + + + + +LE + + N L + S + L L I
Sbjct: 413 RFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPD 468
Query: 175 -GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
L +K+ N L T+L + L N + ++
Sbjct: 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 1e-21
Identities = 62/433 (14%), Positives = 141/433 (32%), Gaps = 52/433 (12%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYF 108
+ + D L+ ++ ++ L+LS N LS +S + L +L+ S N
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 109 RGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVN 168
L + S L+T L+ + ++ S+E + N +
Sbjct: 71 YE----TLDLESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI---------- 111
Query: 169 LTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228
+ ++ + K++ L N ++ + + L+L++N A ++
Sbjct: 112 -SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIR---LSGNKIEEQISPTILALVSVSYLSINNN 285
L ++L N + + ++ LS NK+ + P + V+++S+ NN
Sbjct: 171 LEHLNLQYNFIY-----DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224
Query: 286 NLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISS---YAFQNLVVLGIGNCE 342
L I A+ +NL L N + + +N V +
Sbjct: 225 KLVLIEKALRFS---QNLEHFDL----------RGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 343 IKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402
+K + + G+ + + L + + S G +
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331
Query: 403 PALALQEAKNRADGNQLQL---PLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIP 459
++ + A Q + + + + Q+ L + L+G++
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391
Query: 460 IEIGNVMFLHVLD 472
+G + H +
Sbjct: 392 QAVGQIELQHATE 404
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 3e-20
Identities = 49/274 (17%), Positives = 88/274 (32%), Gaps = 40/274 (14%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
+I + + + + L A+++ + N+K L L N LS
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW--------NVKELDLSGNPLSQISAA 52
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
L T L LNL N + +L L T+DL NN L + +
Sbjct: 53 DLAPFTKLELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104
Query: 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEA 316
+ N I +S + + + NN ++ + ++ L L
Sbjct: 105 HAANNNISR-VSCSRGQ--GKKNIYLANNKITMLRD--LDEGCRSRVQYLDL-------- 151
Query: 317 IPDENQIT-ISSYAF----QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPI 371
N+I ++ L L + I + + KL+ LDL SN++ +
Sbjct: 152 --KLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF-M 206
Query: 372 PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+ + +I L N + K L
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 5e-19
Identities = 62/414 (14%), Positives = 122/414 (29%), Gaps = 82/414 (19%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
++ + L S+ + LD S N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN------------------------ 44
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
LS D++ LE ++L N L + + L+ L++L L+ N +
Sbjct: 45 --PLSQISAADLAPFTKLELLNLSSNVLYETLD----------LESLSTLRTLDLNNNYV 92
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC 250
L+ ++ TL+ NN +S + S I L NN T L
Sbjct: 93 QE-----LLVGPSIETLHAANNN----ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143
Query: 251 MFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309
+ + L N+I+ + A ++ +L++ N + ++ G + L+ L L
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDL- 198
Query: 310 KIFFHEAIPDENQITISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366
N++ FQ + + + N ++ I L + L+ DL N
Sbjct: 199 ---------SSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 367 I-TGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFV 425
G + + + + +E C +P L +
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG------HYGAYCCEDLPAP 302
Query: 426 PETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ ++ + L S + E N +D +
Sbjct: 303 FADRLIALKRKEHALLSGQ-------GSETERLECERENQARQREIDALKEQYR 349
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 52/298 (17%), Positives = 88/298 (29%), Gaps = 61/298 (20%)
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253
+ + N + ++ + A + N+ +DL N + L L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFF 313
+ LS N + E + + +L ++ L +NNN + + ++ L
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV-------GPSIETLHA----- 106
Query: 314 HEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372
N I+ +S Q + + L +N+IT
Sbjct: 107 -----ANNNISRVSCSRGQGK------------------------KNIYLANNKITMLRD 137
Query: 373 GWLGNMPNLFYIDLSYNSISG-EFPKEFCGLPALALQEAKNRADGNQLQ-LPLFVPETKC 430
G + Y+DL N I F + L N + + V K
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----EHLNLQYNFIYDVKGQVVFAKL 193
Query: 431 ALYNQQYNKLFSLPPAI---------YLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ NKL + P LRNN L I + L DL N F
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 58/318 (18%), Positives = 105/318 (33%), Gaps = 68/318 (21%)
Query: 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236
K K+ +SL L + N+ L+L N +SA + + L ++L +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 237 NNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIG 295
N + L L++ L + L+ N ++E +L S+ L NNN+S ++ + G
Sbjct: 68 NVLYETLDLESLST---LRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRG 119
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAF---QNLVVLGIGNCEIKG-QIPTW 350
+ + + L N+IT + + L + EI
Sbjct: 120 -----QGKKNIYL----------ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410
L+ L+L N I + G + L +DLS N ++ EF +
Sbjct: 165 AASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGV----- 216
Query: 411 KNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAI---------YLRNNGLNGSIPIE 461
+ L + NKL + A+ LR NG + +
Sbjct: 217 ------TWISL--------------RNNKLVLIEKALRFSQNLEHFDLRGNGFH-CGTLR 255
Query: 462 IGNVMFLHVLDLSLNNFS 479
V ++
Sbjct: 256 DFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 47/274 (17%), Positives = 85/274 (31%), Gaps = 42/274 (15%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISN---GVVNLTSLN-------------IGKLANL 180
+I + + + + L A+++ N+ L+ + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 181 KSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 240
+ L L +N L L L + + L TL+L N + ++ T+ NNN +
Sbjct: 61 ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112
Query: 241 GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGC 300
I L+ NKI V YL + N + + A +
Sbjct: 113 RVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASS 168
Query: 301 KNLRMLLLCKIFFHEAIPDENQIT-ISSYAF-QNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358
L L L N I + L L + + ++ + +
Sbjct: 169 DTLEHLNL----------QYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217
Query: 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
+ L +N++ I L NL + DL N
Sbjct: 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-19
Identities = 46/263 (17%), Positives = 98/263 (37%), Gaps = 36/263 (13%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYF 108
+ + D L+ ++ ++ L+LS N LS +S + L +L+ S N
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 109 RGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVN 168
+ L + S L+T L+ + ++ S+E + N +
Sbjct: 71 Y---ETLD-LESLSTLRTL-----DLNNNYVQELLVGPSIETLHAANNNI---------- 111
Query: 169 LTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228
+ ++ + K++ L N ++ + + L+L++N A ++
Sbjct: 112 -SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIR---LSGNKIEEQISPTILALVSVSYLSINNN 285
L ++L N + + ++ LS NK+ + P + V+++S+ NN
Sbjct: 171 LEHLNLQYNFIY-----DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN 224
Query: 286 NLSNITGAIGILMGCKNLRMLLL 308
L I A+ +NL L
Sbjct: 225 KLVLIEKALR---FSQNLEHFDL 244
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 46/283 (16%), Positives = 83/283 (29%), Gaps = 64/283 (22%)
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSI 282
+ + +++ + S + + LSGN + + + + + L++
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 283 NNNNLSNITG---------------AIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-IS 326
++N L + L+ ++ L N I+ +S
Sbjct: 66 SSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHA----------ANNNISRVS 115
Query: 327 SYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYID 385
Q + + N +I G ++Q LDL N+I + L +++
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175
Query: 386 LSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP 445
L YN I + + L L L NKL + P
Sbjct: 176 LQYNFIY-DVKGQVV-FAKL-----------KTLDL--------------SSNKLAFMGP 208
Query: 446 AI---------YLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
LRNN L I + L DL N F
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 24/227 (10%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAG 130
+ L+ ++N++S +S S + ++N L G S++Q
Sbjct: 96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT---MLRDLDEGCRSRVQYLDLK 152
Query: 131 FSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGV--VNLTSLN------------IG 175
+ + + + +++ +LE ++L N + + V L +L+
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLAFMGPEFQ 211
Query: 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
A + + L N L + + L NL +LR N F FS + T+
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA-- 268
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSI 282
C T E+ +P L+++ +
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 4e-21
Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 20/243 (8%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR-GDLSAYNFSTL 226
LTS+ G ++ L+L +N L T L L+L N + +
Sbjct: 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNN 285
+L +DL N + L + + +++ ++ L ++ YL I++
Sbjct: 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 286 NLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQI--TISSYAFQ---NLVVLGIGN 340
+ GI G +L +L + N F NL L +
Sbjct: 137 HTRVAF--NGIFNGLSSLEVLKM----------AGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 341 CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 400
C+++ PT L LQVL++ N + +L +D S N I +E
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 401 GLP 403
P
Sbjct: 245 HFP 247
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF--PLTLTSCMFLTAIRLS 259
++ L L N + L F L L + L +N + + L + LS
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 260 GNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPD 319
N + +S L L + +L ++NL + + + +NL L +
Sbjct: 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDI----------S 134
Query: 320 ENQIT-ISSYAFQNLVVLGI----GNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGW 374
+ F L L + GN + +P +L+ L LDL Q+ P
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194
Query: 375 LGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
++ +L +++S+N+ + L +L
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 57/324 (17%), Positives = 103/324 (31%), Gaps = 89/324 (27%)
Query: 72 TGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
TG + L L N L L V F KL
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGV-------------------------FDKLT------ 52
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
L +SL N LS S + +LK L L N +
Sbjct: 53 ---------------QLTKLSLSSNGLS------FKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
+ + L L+ + +N + F +L NL +D+ + + +F
Sbjct: 92 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 252 FLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310
L ++++GN +E P I L ++++L ++ L ++ +L++L +
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNM-- 206
Query: 311 IFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
N + ++ ++ L LQVLD N I
Sbjct: 207 --------SHNNFFSLDTFPYKC---------------------LNSLQVLDYSLNHIMT 237
Query: 370 PIPGWLGNMP-NLFYIDLSYNSIS 392
L + P +L +++L+ N +
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 49/240 (20%), Positives = 81/240 (33%), Gaps = 18/240 (7%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
L + + L L N ++ N NL TL L N +S F+ L
Sbjct: 42 GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLV 100
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNN 286
L + L N + L +R+ N+I + + ++ L + + + N
Sbjct: 101 KLERLYLSKNQLKELPEKMPKT---LQELRVHENEITK-VRKSVFNGLNQMIVVELGTNP 156
Query: 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKG 345
L + G G K L + + + IT I +L L + +I
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRI----------ADTNITTIPQGLPPSLTELHLDGNKITK 206
Query: 346 QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L L L L L N I+ G L N P+L + L+ N + + P +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 62/344 (18%), Positives = 110/344 (31%), Gaps = 88/344 (25%)
Query: 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
L+L +N ++ + L L +N ++ G F+ L
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS---KISPGA--FAPLV------ 100
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
LE + L NQ L L L+ L++H N ++
Sbjct: 101 ---------------KLERLYLSKNQ-----------LKELPEKMPKTLQELRVHENEIT 134
Query: 192 GFLPQFLMNCTNLITLNLRINNFR-GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC 250
+I + L N + + F + L I + + N T S
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS- 193
Query: 251 MFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309
LT + L GNKI + + L L +++ L ++ N++S + G L +LR L L
Sbjct: 194 --LTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDN--GSLANTPHLRELHL- 247
Query: 310 KIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
+ N++ ++P L K +QV+ L +N I+
Sbjct: 248 ---------NNNKLV---------------------KVPGGLADHKYIQVVYLHNNNISA 277
Query: 370 ------PIPGWLGNMPNLFYIDLSYNSISGEF--PKEFCGLPAL 405
PG+ + + L N + P F +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 61/284 (21%), Positives = 102/284 (35%), Gaps = 65/284 (22%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
+ L+L+ N ++ +F L NLHT+ L NN + P + L + LS N
Sbjct: 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 262 KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDEN 321
+++E + + ++ L ++ N ++ + + G + ++ L N
Sbjct: 111 QLKE-LPEKMPK--TLQELRVHENEITKVRK--SVFNGLNQMIVVEL----------GTN 155
Query: 322 QIT---ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWL 375
+ I + AFQ L + I + I IP L L L L N+IT L
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASL 212
Query: 376 GNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQ 435
+ NL + LS+NSIS P L +L L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHL-----------RELHL-------------- 247
Query: 436 QYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
NKL +P + + ++ V+ L NN S
Sbjct: 248 NNNKLVKVPGGLA---------------DHKYIQVVYLHNNNIS 276
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-20
Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 23/232 (9%)
Query: 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN 238
+ LS +PQ + +N LNL NN + + A F LH+L + LG N+
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110
Query: 239 FTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGIL 297
L + L N + I L + L + NN + +I
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPS--YAF 167
Query: 298 MGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGK 353
+L L L + ++ IS AF+ NL L +G C IK +P L
Sbjct: 168 NRVPSLMRLDL---------GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTP 216
Query: 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L L+ L++ N PG + +L + + + +S F GL +L
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 47/261 (18%), Positives = 84/261 (32%), Gaps = 32/261 (12%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
+P + + + ++L N + + + L +L+ L+L NS+
Sbjct: 68 EVPQGIPS--NTRYLNLMENNIQ--------MIQADTFRHLHHLEVLQLGRNSIRQIEVG 117
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
+L TL L N + + F L L + L NN L +
Sbjct: 118 AFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176
Query: 257 RLSG-NKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFH 314
L K+E IS L ++ YL++ N+ ++ L L L +
Sbjct: 177 DLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDMPN----LTPLVGLEELEM------ 225
Query: 315 EAIPDENQIT-ISSYAFQNLV---VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370
N I +F L L + N ++ L L L+L N ++
Sbjct: 226 ----SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 371 IPGWLGNMPNLFYIDLSYNSI 391
+ L + L +N
Sbjct: 282 PHDLFTPLRYLVELHLHHNPW 302
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-20
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 20/209 (9%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
TN LNL N + + +F L +L + L N+ L + L N
Sbjct: 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 262 KIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320
++ I L + L + NN + +I +LR L L +
Sbjct: 123 RLTT-IPNGAFVYLSKLKELWLRNNPIESI--PSYAFNRIPSLRRLDL---------GEL 170
Query: 321 NQIT-ISSYAFQ---NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLG 376
+++ IS AF+ NL L + C ++ +IP L L KL LDL N ++ PG
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 377 NMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+ +L + + + I F L +L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 3e-18
Identities = 53/261 (20%), Positives = 88/261 (33%), Gaps = 32/261 (12%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
+PD +S + ++L NQ+ + + L +L+ L+L N +
Sbjct: 57 EVPDGIST--NTRLLNLHENQIQ--------IIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
NL TL L N + F L L + L NN L +
Sbjct: 107 AFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165
Query: 257 RLSG-NKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFH 314
L ++ IS L ++ YL++ NL I L L L L
Sbjct: 166 DLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREIPN----LTPLIKLDELDL------ 214
Query: 315 EAIPDENQIT-ISSYAFQNLV---VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370
N ++ I +FQ L+ L + +I+ L+ L ++L N +T
Sbjct: 215 ----SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 371 IPGWLGNMPNLFYIDLSYNSI 391
+ +L I L +N
Sbjct: 271 PHDLFTPLHHLERIHLHHNPW 291
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 89.0 bits (220), Expect = 5e-19
Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 31/236 (13%)
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232
A L S++ + ++ + ++ + + L N+ +
Sbjct: 16 PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKL 70
Query: 233 DLGNNNFTGSFPL-TLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
L N T PL L + L + L NKI++ +S + L + LS+ +N +S+I
Sbjct: 71 FLNGNKLTDIKPLTNLKN---LGWLFLDENKIKD-LSS-LKDLKKLKSLSLEHNGISDIN 125
Query: 292 GAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYA-FQNLVVLGIGNCEIKGQIPT 349
G L+ L L L N+IT I+ + L L + + +I +P
Sbjct: 126 G----LVHLPQLESLYL----------GNNKITDITVLSRLTKLDTLSLEDNQISDIVP- 170
Query: 350 WLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L L KLQ L L N I+ L + NL ++L + L
Sbjct: 171 -LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 5e-17
Identities = 49/241 (20%), Positives = 85/241 (35%), Gaps = 31/241 (12%)
Query: 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYN 222
V + + N +L ++ + + + + Q + N+ L L N D+
Sbjct: 30 KKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIK--P 82
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLS 281
+ L NL + L N L L L ++ L N I + I+ ++ L + L
Sbjct: 83 LTNLKNLGWLFLDENKIKDLSSLKDLKK---LKSLSLEHNGISD-ING-LVHLPQLESLY 137
Query: 282 INNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYA-FQNLVVLGIG 339
+ NN +++IT L L L L ++NQI+ I A L L +
Sbjct: 138 LGNNKITDITV----LSRLTKLDTLSL----------EDNQISDIVPLAGLTKLQNLYLS 183
Query: 340 NCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEF 399
I + L LK L VL+L S + N+ + + S+
Sbjct: 184 KNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241
Query: 400 C 400
Sbjct: 242 D 242
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 3e-14
Identities = 59/326 (18%), Positives = 106/326 (32%), Gaps = 70/326 (21%)
Query: 74 KLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
NL ++ + + + +++ + +Q G
Sbjct: 19 AFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-------------DIKSVQ----GI 61
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
YL ++ + L N+L+ I + L NL L L N +
Sbjct: 62 QYLP-----------NVTKLFLNGNKLTD-IK---------PLTNLKNLGWLFLDENKIK 100
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL-TLTSC 250
L + L +L+L N D++ L L ++ LGNN T L LT
Sbjct: 101 DL--SSLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDITVLSRLTK- 154
Query: 251 MFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310
L + L N+I + I P + L + L ++ N++S++ L G KNL +L L
Sbjct: 155 --LDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELF- 205
Query: 311 IFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
+ NLVV +K + + D +
Sbjct: 206 ---------SQECLNKPINHQSNLVVP----NTVKNTDGSLVTPEIISDDGDYEKPNVKW 252
Query: 370 PIPGWLGNMPNLFYIDLSYNSISGEF 395
+P + + +FY ++ F
Sbjct: 253 HLPEFTNEVSFIFYQPVTIGKAKARF 278
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 1e-10
Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 29/239 (12%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRG 110
+ + + ++ S+ L ++ L L+ N L+ + P ++ L L N
Sbjct: 44 SIDQIIANNSDIK-SVQGI-QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN---- 97
Query: 111 HCQLP--SGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVN 168
++ S L + KL++ + +S I + + LE + L N+++ +
Sbjct: 98 --KIKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--------D 145
Query: 169 LTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228
+T L+ +L L +L L N +S L T L L L N+ DL + L N
Sbjct: 146 ITVLS--RLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS-DLR--ALAGLKN 198
Query: 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
L ++L + ++ + ++ + + + + +
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-18
Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 53/322 (16%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPS-VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
KLT L L + N+++ L S L+ L N L + +KL
Sbjct: 61 EKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT---NLD--VTPLTKLTYLNCDT 115
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
+ L+ DVS L ++ N LT +++ L L H N
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNT-----------LTEIDVSHNTQLTELDCHLNKKI 161
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
L + T L TL+ N ++ + S L+ ++ NN T L L +
Sbjct: 162 TKLD--VTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNCDTNNITK---LDLNQNI 212
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
LT + S NK+ + L ++Y + N L+ + + L L
Sbjct: 213 QLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHC--- 261
Query: 312 FFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370
+ + I L+ C ++ + +L +LD + IT
Sbjct: 262 -------IQTDLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-E 311
Query: 371 IPGWLGNMPNLFYIDLSYNSIS 392
+ L P L Y+ L+ ++
Sbjct: 312 LD--LSQNPKLVYLYLNNTELT 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 55/333 (16%), Positives = 102/333 (30%), Gaps = 48/333 (14%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPS-VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
LT L +LN N L+ L S P L+ L+ + N ++ + + ++L
Sbjct: 103 TPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---EID--VSHNTQLTELD--C 155
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNL----------TSLNIGKLANLK 181
DV+ L + N+++ + L T L++ + L
Sbjct: 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLT 215
Query: 182 SLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 241
L +N L+ + T L + +N L+ + STL L T+ +
Sbjct: 216 FLDCSSNKLTEI---DVTPLTQLTYFDCSVNP----LTELDVSTLSKLTTLHCIQTDLLE 268
Query: 242 SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCK 301
+ LT L + G + + + + L ++ + L
Sbjct: 269 ---IDLTHNTQLIYFQAEGCRKIK--ELDVTHNTQLYLLDCQAAGITELD-----LSQNP 318
Query: 302 NLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360
L L L + ++T + L L N I+ + +GK+ L
Sbjct: 319 KLVYLYL----------NNTELTELDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNN 366
Query: 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393
Q L N + G
Sbjct: 367 FEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 59/330 (17%), Positives = 105/330 (31%), Gaps = 59/330 (17%)
Query: 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYN 222
+ + +++ +LA L SL H +S++ + T L L NN ++ +
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN----ITTLD 80
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSI 282
S NL + +N T L +T LT + NK+ + ++YL+
Sbjct: 81 LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNC 134
Query: 283 NNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP------------DENQIT-ISSYA 329
N L+ I + L L + N+IT +
Sbjct: 135 ARNTLTEID-----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQ 189
Query: 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
+ L L I ++ L + +L LD SN++T I + + L Y D S N
Sbjct: 190 NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243
Query: 390 SISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYL 449
++ L L L L IY
Sbjct: 244 PLTELDVSTLSKLTTLHC-------IQTDL----------------LEIDLTHNTQLIYF 280
Query: 450 RNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ G +++ + L++LD +
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 30/216 (13%)
Query: 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237
N S + L +L+ ++ D++ L L + +N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSN 74
Query: 238 NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGIL 297
N T L L+ LT + NK+ + + L ++YL+ + N L+ + +
Sbjct: 75 NITT---LDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLD-----V 123
Query: 298 MGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKK 356
L L N +T I L L + ++ + +
Sbjct: 124 SQNPLLTYLNC----------ARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQ 171
Query: 357 LQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
L LD N+IT + + L ++ N+I+
Sbjct: 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 26/179 (14%)
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
N + + ++ LT++ + I + I L ++ L +NN+
Sbjct: 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI 76
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQ 346
+ + L NL L D N++T + L L ++ +
Sbjct: 77 TTLD-----LSQNTNLTYLAC----------DSNKLTNLDVTPLTKLTYLNCDTNKLT-K 120
Query: 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
+ + + L L+ N +T I + + L +D N + L
Sbjct: 121 LD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQL 172
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 37/235 (15%)
Query: 253 LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF 312
+ + +++ + + L +++ L +N++++++TG + L L+
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG----IEKLTGLTKLIC---- 71
Query: 313 FHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPI 371
N IT + NL L + ++ + + L KL L+ +N++T +
Sbjct: 72 ------TSNNITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KL 121
Query: 372 PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCA 431
+ P L Y++ + N+++ + L + ++ P+T+
Sbjct: 122 D--VSQNPLLTYLNCARNTLT---EIDVSHNTQL---TELDCHLNKKITKLDVTPQTQLT 173
Query: 432 LYNQQYNKLFSLPPA-------IYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ +NK+ L + + N + +++ + L LD S N +
Sbjct: 174 TLDCSFNKITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT 225
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 63/351 (17%), Positives = 107/351 (30%), Gaps = 67/351 (19%)
Query: 77 HLCHLNLSHNHLSFLSPSVP-FLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAGFSYL 134
HL + S L + + ++LD +N +L L + +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKI 90
Query: 135 SGSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193
S I + S L+ + + N L + ++L L++H N +
Sbjct: 91 S-KIHEKAFSPLRKLQKLYISKNHL-----------VEIPPNLPSSLVELRIHDNRIRKV 138
Query: 194 LPQFLMNCTNLITLNLRINNFRGD-LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252
N+ + + N F L L+ + + TG +
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET--- 194
Query: 253 LTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
L + L NKI+ I L + L + +N + I G L LR L L
Sbjct: 195 LNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIEN--GSLSFLPTLRELHL--- 248
Query: 312 FFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG-- 369
D N+++ ++P L LK LQV+ L +N IT
Sbjct: 249 -------DNNKLS---------------------RVPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 370 ----PIPGWLGNMPNLFYIDLSYNSISGEF--PKEFCGLPAL-ALQEAKNR 413
G+ I L N + P F + A+Q +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 55/283 (19%), Positives = 96/283 (33%), Gaps = 64/283 (22%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
+ L+L+ N+ +L +F L +L+ + L NN + + L + +S N
Sbjct: 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 262 KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDEN 321
+ E I P + + S+ L I++N + + G+ G +N+ + + N
Sbjct: 113 HLVE-IPPNLPS--SLVELRIHDNRIRKVPK--GVFSGLRNMNCIEM----------GGN 157
Query: 322 QIT---ISSYAFQ--NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLG 376
+ AF L L I ++ IP + L L L N+I L
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLL 214
Query: 377 NMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQ 436
L+ + L +N I LP L +L L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTL-----------RELHL--------------D 249
Query: 437 YNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
NKL +P + ++ L V+ L NN +
Sbjct: 250 NNKLSRVPAGLP---------------DLKLLQVVYLHTNNIT 277
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 49/255 (19%), Positives = 93/255 (36%), Gaps = 46/255 (18%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
++P + A + + I L N++S ++ + + NL L LH+N L+
Sbjct: 25 AVPVGIPA--ASQRIFLHGNRIS--------HVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256
L L+L N + F L LHT+ L P L +
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 257 RLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315
L N ++ + L ++++L ++ N +S++ G +L LLL
Sbjct: 135 YLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLL------- 184
Query: 316 AIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGW 374
+N++ + +AF++ L +L L L +N ++
Sbjct: 185 ---HQNRVAHVHPHAFRD---------------------LGRLMTLYLFANNLSALPTEA 220
Query: 375 LGNMPNLFYIDLSYN 389
L + L Y+ L+ N
Sbjct: 221 LAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-15
Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 36/206 (17%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
+ L N + A +F NL + L +N T L + LS N
Sbjct: 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 262 KIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320
+ P L + L ++ L + G+ G L+ L L +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYL----------QD 138
Query: 321 NQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMP 379
N + + F++L L L L N+I+ +
Sbjct: 139 NALQALPDDTFRDLG---------------------NLTHLFLHGNRISSVPERAFRGLH 177
Query: 380 NLFYIDLSYNSISGEFPKEFCGLPAL 405
+L + L N ++ P F L L
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRL 203
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 46/219 (21%), Positives = 70/219 (31%), Gaps = 42/219 (19%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
+L L L N L+ + + L LD S N ++L++
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN---------------AQLRSVDPA 99
Query: 131 -FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
F L L + L L + G+ LA L+ L L N+
Sbjct: 100 TFHGLG-----------RLHTLHLDRCGLQ-ELGPGL-------FRGLAALQYLYLQDNA 140
Query: 190 LSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTS 249
L + NL L L N + F LH+L + L N P
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 250 CMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNL 287
L + L N + + LA L ++ YL +N+N
Sbjct: 200 LGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 45/189 (23%), Positives = 67/189 (35%), Gaps = 33/189 (17%)
Query: 53 QVTHLWLPDRGLRGSIYP--FTGKLTHLCHLNLSHN-HLSFLSPSV----PFLSILDFSH 105
+T LWL L I FTG L L L+LS N L + P+ L L
Sbjct: 57 NLTILWLHSNVLA-RIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114
Query: 106 NYFRGHCQLPSG-LGNFSKLQTFRAGFSYLSGSIPDDV-SAAASLEDISLPVNQLSGAIS 163
+ +L G + LQ + L ++PDD +L + L N++S ++
Sbjct: 115 CGLQ---ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVP 169
Query: 164 NGV----VNLTSLNIG-------------KLANLKSLKLHTNSLSGFLPQFLMNCTNLIT 206
+L L + L L +L L N+LS + L L
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229
Query: 207 LNLRINNFR 215
L L N +
Sbjct: 230 LRLNDNPWV 238
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 46/310 (14%), Positives = 94/310 (30%), Gaps = 35/310 (11%)
Query: 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237
A++ + L NS++ +L L + + F L +L + L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 238 NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL--ALVSVSYLSINNNNLSNITGAIG 295
F L + L+ ++ + L S+ L + +NN+ I A
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-S 148
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
+ + +L L N++ I N T L +L
Sbjct: 149 FFLNMRRFHVLDL----------TFNKVKSICEEDLLNFQGKHF----------TLL-RL 187
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL----ALQEA 410
+ + D+ + G ++ +DLS N K F A +L +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 411 KNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEI-GNVMFLH 469
+ G+ F + + + + L + + ++ + + L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTC----DLSKSKIF-ALLKSVFSHFTDLE 302
Query: 470 VLDLSLNNFS 479
L L+ N +
Sbjct: 303 QLTLAQNEIN 312
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 65/383 (16%), Positives = 102/383 (26%), Gaps = 94/383 (24%)
Query: 53 QVTHLWLPDRGLRGSIYPFT-GKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNY 107
+ L + + I T L+ L L L +N L L +L +
Sbjct: 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114
Query: 108 FRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVV 167
G L F L SLE + L N +
Sbjct: 115 LDGAV-LSGNF--FKPLT---------------------SLEMLVLRDNNIKKIQPASFF 150
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT--NLITLNLRIN-------NFRGDL 218
+ L L N + + L+N + L L + G
Sbjct: 151 L-------NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 219 SAYNFSTLHNLHTIDLGNNNFTGSFP---LTLTSCMFLTAIRLSGNKIEEQISPTI---- 271
N ++ T+DL N F S + + ++ LS +
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 272 --------LALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQI 323
L V ++ + + + + +L L L +N+I
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLK--SVFSHFTDLEQLTL----------AQNEI 311
Query: 324 T-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLF 382
I AF L L L+L N + N+ L
Sbjct: 312 NKIDDNAFWGLT---------------------HLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 383 YIDLSYNSISGEFPKEFCGLPAL 405
+DLSYN I + F GLP L
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNL 373
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 59/350 (16%), Positives = 110/350 (31%), Gaps = 50/350 (14%)
Query: 76 THLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLS 135
H+ +++LS N ++ L+ + LQ +
Sbjct: 30 AHVNYVDLSLNSIAELNETS----------------------FSRLQDLQFLKVEQQTPG 67
Query: 136 GSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL-SGF 193
I ++ +SL + L NQ + G N LANL+ L L +L
Sbjct: 68 LVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFN-------GLANLEVLTLTQCNLDGAV 119
Query: 194 LPQ-FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----------GS 242
L F T+L L LR NN + A F + H +DL N
Sbjct: 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 243 FPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI-TGAIGILMGCK 301
TL +T ++ + + S++ L ++ N +
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 302 NLRMLLLCKIFFHEAIPDENQIT-ISSYAFQ-----NLVVLGIGNCEIKGQIPTWLGKLK 355
++ L+L + + ++ F+ + + +I + +
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299
Query: 356 KLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L+ L L N+I + +L ++LS N + + F L L
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 41/219 (18%), Positives = 68/219 (31%), Gaps = 36/219 (16%)
Query: 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF-------LSILDFSHNY 107
T + + L K T + L+LS N F + L S++Y
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250
Query: 108 FRGHCQLPSGLGNFSKLQTFRAGFSYLS---------GSIPDDV-SAAASLEDISLPVNQ 157
G + + S + ++ V S LE ++L N+
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 158 LSGAISNGV----VNLTSLNIG-------------KLANLKSLKLHTNSLSGFLPQFLMN 200
++ I + +L LN+ L L+ L L N + Q +
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369
Query: 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
NL L L N + + F L +L I L N +
Sbjct: 370 LPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 18/148 (12%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSVPF----LSILDFSHNYFRGHCQLPSG-LGNFSKLQTFR 128
+ + + +LS + + L SV L L + N ++ + L
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN---KIDDNAFWGLTHLLKLN 329
Query: 129 AGFSYLSGSIPDDV-SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187
++L SI + LE + L N + A+ + L NLK L L T
Sbjct: 330 LSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL-------GLPNLKELALDT 380
Query: 188 NSLSGFLPQFLMNCTNLITLNLRINNFR 215
N L T+L + L N +
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 66/436 (15%), Positives = 129/436 (29%), Gaps = 76/436 (17%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
L+ L L LSHN + L V L LD SHN +LQ
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN----------------RLQ---- 113
Query: 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
+I ASL + L N G L L L L
Sbjct: 114 -------NISCCP--MASLRHLDLSFNDFDVLPVCKE-------FGNLTKLTFLGLSAAK 157
Query: 190 LSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL-----GNNNFTGSFP 244
+ +L + ++ + +L +T L N+ F+
Sbjct: 158 FRQLDLLPV---AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214
Query: 245 LTLTSCMFLTAIRLSGNKIEEQISPTILA----LVSVSYLSINNNNLS-NITGAIGILMG 299
+++ + L + N Q T L+ ++ +++ + + + +
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274
Query: 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQV 359
+ + L + + E D + T S A ++L++ + N ++ +
Sbjct: 275 PRPVEYLNIYNLTITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333
Query: 360 LDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQL 419
L + + + +++ + N + + L L + N L
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR----NGL 389
Query: 420 Q-LP----LFVPETKCALYNQQYNKL--------FSLPPAI---YLRNNGLNGSIPIEIG 463
+ + + + N L + +I L +N L GS+ +
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL- 448
Query: 464 NVMFLHVLDLSLNNFS 479
+ VLDL N
Sbjct: 449 -PPKVKVLDLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 55/370 (14%), Positives = 112/370 (30%), Gaps = 58/370 (15%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPS---------GLGNFSK 123
G LT L L LS + L + + + N +
Sbjct: 143 GNLTKLTFLGLSAAKFR----QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198
Query: 124 LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQ-----------------------LSG 160
L S S + V+A L+ ++ +N L
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258
Query: 161 AISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSA 220
+ ++ ++ L ++ +++ + + + +L I + + +
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318
Query: 221 YN----FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS 276
++ +S ++ L ++ + S T + + N + + L
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378
Query: 277 VSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE---------------N 321
+ L + N L N + +L L + + D N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 322 QITISSYA--FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMP 379
+T S + + VL + N I IP + L+ LQ L++ SNQ+ G +
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497
Query: 380 NLFYIDLSYN 389
+L YI L N
Sbjct: 498 SLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 63/374 (16%), Positives = 114/374 (30%), Gaps = 57/374 (15%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPF-----LSILDFSHNYFR------------------ 109
+ L HL+LS N L F L+ L S FR
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177
Query: 110 -GHCQLPSG------LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAI 162
+ G + N + L S S + V+A L+ ++ +N +
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237
Query: 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG----DL 218
++ + L N+ + T + LN+ +
Sbjct: 238 LMTFLSELTRGP-TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296
Query: 219 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278
Y+ + L +L + N F S + + LS + + S +
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356
Query: 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT---ISSYAFQNLVV 335
+L+ N ++ K L+ L+L + N + + +N+
Sbjct: 357 FLNFTQNVFTDSV--FQGCSTLKRLQTLILQR----------NGLKNFFKVALMTKNMSS 404
Query: 336 LGIGNCEIK----GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391
L + + + + VL+L SN +TG + L P + +DL N I
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462
Query: 392 SGEFPKEFCGLPAL 405
PK+ L AL
Sbjct: 463 M-SIPKDVTHLQAL 475
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 28/171 (16%), Positives = 51/171 (29%), Gaps = 16/171 (9%)
Query: 49 DSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYF 108
S + T L S++ L L L L N L +
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409
Query: 109 RGHCQLPSGLGNF-----SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAIS 163
L S + + + L+GS+ + ++ + L N++ +I
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIP 466
Query: 164 NGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNF 214
V +L L+ L + +N L T+L + L N +
Sbjct: 467 KDVTHLQ--------ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 57/355 (16%), Positives = 101/355 (28%), Gaps = 49/355 (13%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG----------- 216
NLT + K+L L NS+S + + L L L N R
Sbjct: 42 NLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101
Query: 217 ---------DLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-----LTSCMFLTAIRLSGNK 262
L + + +L +DL N+F P+ LT LT + LS K
Sbjct: 102 LEYLDVSHNRLQNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTK---LTFLGLSAAK 157
Query: 263 IEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRM-LLLCKIFFHEAIPDEN 321
Q+ +A + +S + ++ + G L + L+ + +
Sbjct: 158 F-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 322 QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN---M 378
+ N+ L NC+ + L + L + L + T L
Sbjct: 217 VNALGHLQLSNI-KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 379 PNLFYIDLSYNSISGEFPKEFCGLPALALQEAK-NRADGNQLQLP------LFVPETKCA 431
+ Y+++ +I+ +E AL+ +F
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 432 LYNQQYNKLFSLPPAI-------YLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
L + + P N S+ + L L L N
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 5e-15
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 29/235 (12%)
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232
+ A L S++ + ++ + ++ + + L N+ +
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKL 73
Query: 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292
L N T PL + L + L NK+++ +S + L + LS+ +N +S+I G
Sbjct: 74 FLNGNKLTDIKPLA--NLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNGISDING 129
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYA-FQNLVVLGIGNCEIKGQIPTW 350
L+ L L L N+IT I+ + L L + + +I +P
Sbjct: 130 ----LVHLPQLESLYL----------GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-- 173
Query: 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L L KLQ L L N I+ L + NL ++L + L
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 46/221 (20%), Positives = 79/221 (35%), Gaps = 27/221 (12%)
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232
+L ++ + + + + Q + N+ L L N D+ + L NL +
Sbjct: 41 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIK--PLANLKNLGWL 95
Query: 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292
L N L L ++ L N I + I+ ++ L + L + NN +++IT
Sbjct: 96 FLDENKVKDLSSLK--DLKKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKITDITV 151
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYA-FQNLVVLGIGNCEIKGQIPTW 350
L L L L ++NQI+ I A L L + I
Sbjct: 152 ----LSRLTKLDTLSL----------EDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-- 195
Query: 351 LGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391
L LK L VL+L S + N+ + + S+
Sbjct: 196 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 25/220 (11%)
Query: 74 KLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
+L + + +++ + + +P ++ L + N L N L
Sbjct: 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD----IKPLANLKNLGWLFLDE 99
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
+ + + + L+ +SL N +S ++ + L L+SL L N ++
Sbjct: 100 NKVK-DL-SSLKDLKKLKSLSLEHNGIS--------DIN--GLVHLPQLESLYLGNNKIT 147
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
L T L TL+L N D+ + L L + L N+ + L
Sbjct: 148 DI--TVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLK 200
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
L + L + + LV + + + +L
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 45/219 (20%)
Query: 74 KLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
L +L L L N + LS + L L HN +GL + +L++
Sbjct: 88 NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS----DINGLVHLPQLESL---- 139
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
YL + + DI+ + +L L +L L N +S
Sbjct: 140 -YLGNN---------KITDIT--------------------VLSRLTKLDTLSLEDNQIS 169
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
L T L L L N+ DL + L NL ++L + ++ +
Sbjct: 170 DI--VPLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 224
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI 290
++ + + + + + +N
Sbjct: 225 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 6e-15
Identities = 43/240 (17%), Positives = 75/240 (31%), Gaps = 32/240 (13%)
Query: 70 PFTGKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128
+ L L+ +LS L ++ P +++L+ + N LP + L
Sbjct: 53 LKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI---SLPELPASLEYLDACD 109
Query: 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG---------KLAN 179
S L SL+ + + NQL+ + L +N +
Sbjct: 110 NRLSTLPELPA-------SLKHLDVDNNQLT-MLPELPALLEYINADNNQLTMLPELPTS 161
Query: 180 LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT----IDLG 235
L+ L + N L+ FLP+ +L L++ N L A H+
Sbjct: 162 LEVLSVRNNQLT-FLPELP---ESLEALDVS-TNLLESLPA-VPVRNHHSEETEIFFRCR 215
Query: 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIG 295
N T P + S I L N + +I ++ + S G
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 6e-14
Identities = 52/308 (16%), Positives = 94/308 (30%), Gaps = 69/308 (22%)
Query: 172 LNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 231
L I +L + N++SG + L N +S ++
Sbjct: 5 LPINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63
Query: 232 IDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
+ L N + S P L +T + ++ N + + +L YL +N LS +
Sbjct: 64 LQLNRLNLS-SLPDNLPPQ--ITVLEITQNALIS-LPELPASL---EYLDACDNRLSTLP 116
Query: 292 GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWL 351
+L+ L + D NQ+T+ L + N ++ +P
Sbjct: 117 ELPA------SLKHLDV----------DNNQLTMLPELPALLEYINADNNQLT-MLPELP 159
Query: 352 GKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411
L +VL + +NQ+T +P ++ L D+S N + P E
Sbjct: 160 TSL---EVLSVRNNQLTF-LPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIF 211
Query: 412 NRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVL 471
R N++ IP I ++ +
Sbjct: 212 FRCRENRIT------------------------------------HIPENILSLDPTCTI 235
Query: 472 DLSLNNFS 479
L N S
Sbjct: 236 ILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 3e-11
Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 58/239 (24%)
Query: 169 LTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHN 228
++ L + L+L+ +LS LP L + L + N L +
Sbjct: 50 VSLLKECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPE----LPAS 101
Query: 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288
L +D +N + + P S L + N++ + L Y++ +NN L+
Sbjct: 102 LEYLDACDNRLS-TLPELPASLKHL---DVDNNQLTM-LPELPALL---EYINADNNQLT 153
Query: 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKG--- 345
+ +L +L + NQ+T ++L L + ++
Sbjct: 154 MLPELPT------SLEVLSV----------RNNQLTFLPELPESLEALDVSTNLLESLPA 197
Query: 346 -----------------------QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNL 381
IP + L + L N ++ I L
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 26/181 (14%)
Query: 75 LTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYL 134
L HL++ +N L+ L L ++ +N LP + L +
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLT---MLPELPTSLEVL--------SV 167
Query: 135 SG----SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
+P+ SLE + + N L ++ V + N +
Sbjct: 168 RNNQLTFLPELPE---SLEALDVSTNLLE-SLPAVPVRNHHS----EETEIFFRCRENRI 219
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC 250
+ +P+ +++ T+ L N + + G + +
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRI--RESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276
Query: 251 M 251
Sbjct: 277 H 277
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 8/135 (5%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133
T L L++ +N L+FL L LD S N LP+ + F
Sbjct: 158 LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE---SLPAVPVRNHHSEETEIFF-R 213
Query: 134 LSG----SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
IP+++ + I L N LS I + T+ +
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
Query: 190 LSGFLPQFLMNCTNL 204
+ P
Sbjct: 274 NTLHRPLADAVTAWF 288
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 9e-15
Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 21/230 (9%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
N + + K+L L N L + L L+L + + + +L
Sbjct: 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLS 76
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNN 286
+L T+ L N + L + + + + L ++ L++ +N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNL 135
Query: 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIK- 344
+ + NL L L N+I I + L + + N +
Sbjct: 136 IQSFKLP-EYFSNLTNLEHLDL----------SSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 345 -----GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
I K +L+ L L +NQ+ G + +L I L N
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 49/243 (20%)
Query: 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG- 130
+L+LS N L L P L +LD S ++QT G
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC----------------EIQTIEDGA 71
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
+ LS L + L N + +++ G + L++L+ L +L
Sbjct: 72 YQSLS-----------HLSTLILTGNPIQ-SLALGAFS-------GLSSLQKLVAVETNL 112
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----GSFPLT 246
+ + + L LN+ N + FS L NL +DL +N
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-V 171
Query: 247 LTSCMFLTA-IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRM 305
L L + LS N + I P + + L+++ N L ++ GI +L+
Sbjct: 172 LHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPD--GIFDRLTSLQK 228
Query: 306 LLL 308
+ L
Sbjct: 229 IWL 231
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSVPF----LSILDFSHNYFRGHCQLPSGL-GNFSKLQTFR 128
L+HL L L+ N + L+ L L L + G+ L+
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKTLKELN 130
Query: 129 AGFSYLSGSIPDDV-SAAASLEDISLPVNQLSGAISNGV-VNLTSLNIGKLANLKSLKLH 186
+ + + S +LE + L N++ +I L + + L SL L
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL----SLDLS 185
Query: 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237
N ++ F+ L L L N + + F L +L I L N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 38/189 (20%), Positives = 58/189 (30%), Gaps = 39/189 (20%)
Query: 319 DENQIT-ISSYAFQNLV---VLGIGNCEIKGQIPTWL-GKLKKLQVLDLGSNQITGPIPG 373
N + + SY+F + VL + CEI+ I L L L L N I G
Sbjct: 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG 94
Query: 374 WLGNMPNLFYIDLSYNSISGEFPKEFCGLPA---LALQEAKNRADGNQLQ-LPLFVPETK 429
+ +L + +++ L L + N +Q L PE
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-------NLIQSFKL--PEYF 145
Query: 430 CALYNQQY-----NKLFSLPPAI--------------YLRNNGLNGSIPIEIGNVMFLHV 470
L N ++ NK+ S+ L N +N I + L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204
Query: 471 LDLSLNNFS 479
L L N
Sbjct: 205 LALDTNQLK 213
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 78/457 (17%), Positives = 146/457 (31%), Gaps = 71/457 (15%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
L+ L L +SHN + +L SV L LD SHN + L+
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISC--HPTVNLKHLDL 97
Query: 130 GFSYLSGSIPDD--VSAAASLEDISLPVNQLSGAISNGVVNLTSLNI------------- 174
F+ ++P + L+ + L L + + +L +
Sbjct: 98 SFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156
Query: 175 -GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFS--------- 224
L + + LH + F+++ + NL ++N + L S
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216
Query: 225 ---------TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV 275
TL+N+ T T ++ ++L G + +L
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 276 SVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI-FFHEAIPDENQITISSYAFQNLV 334
++S + ++ I + N++ + H P + +
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK---------ISPFL 327
Query: 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT--GPIPGWLGNMPNLFYIDLSYNSIS 392
L N + + G L +L+ L L NQ+ I M +L +D+S NS+S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 393 GEFPKEFCGLPALALQEAKNRADGNQLQ-LPLFVPETKCALYNQQYNKLFSLPPAI---- 447
+ K C +L N L + + + NK+ S+P +
Sbjct: 388 YDEKKGDCSWTK-SLLSL--NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE 444
Query: 448 -----YLRNNGLNGSIPIEI-GNVMFLHVLDLSLNNF 478
+ +N L S+P I + L + L N +
Sbjct: 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 67/443 (15%), Positives = 126/443 (28%), Gaps = 76/443 (17%)
Query: 80 HLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLS 135
LN+S N++S L S L IL SHN + L + F Q
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQ---YLDISV--FKFNQ---------- 69
Query: 136 GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNI--------------GKLANLK 181
LE + L N+L + VNL L++ G ++ LK
Sbjct: 70 -----------ELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 182 SLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH--NLHTIDLGNNNF 239
L L T L + + L + + + +LH + N F
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 240 TGSFPLTLTSCMFLTAIRLSGNKIE------EQISPTILALVSVSYLSINNNNLS-NITG 292
+++ + L + + I + +S L++NN + N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352
I L+ + + + D S + + L + + +
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 353 KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKN 412
+ + + + + ++D S N ++ + L L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL----ETL 353
Query: 413 RADGNQLQ-LP----LFVPETKCALYNQQYNKLFSLPPA-----------IYLRNNGLNG 456
NQL+ L + + N + + + +N L
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 457 SIPIEIGNVMFLHVLDLSLNNFS 479
+I + + VLDL N
Sbjct: 414 TIFRCLPPR--IKVLDLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 51/352 (14%), Positives = 98/352 (27%), Gaps = 36/352 (10%)
Query: 73 GKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132
G ++ L L LS HL S + T
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171
Query: 133 YLSGSIPDDVSAAASLEDISLPVNQLSG--------AISNGVVNLTSLNIGKLANLKSLK 184
+ + + + +L ++ + + + L + L +++
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231
Query: 185 LHTNSLSGFLPQFLMNCTNLITLNLRINNFRG----DLSAYNFSTLHNLHTIDLGNNNFT 240
NS L L+ T + ++ +G Y+ ++L L + ++ F
Sbjct: 232 TTWNSFIRILQ--LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289
Query: 241 GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGC 300
+ + + + +L +NN L++
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV--FENCGHL 347
Query: 301 KNLRMLLLCKIFFHEAIPDENQIT---ISSYAFQNLVVLGI----GNCEIKGQIPTWLGK 353
L L+L NQ+ + + L N +
Sbjct: 348 TELETLIL----------QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397
Query: 354 LKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
K L L++ SN +T I L P + +DL N I PK+ L AL
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEAL 446
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 7e-10
Identities = 58/367 (15%), Positives = 117/367 (31%), Gaps = 43/367 (11%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
+P D+S +++ N +S L + +I L+ L+ L + N +
Sbjct: 14 HVPKDLSQ--KTTILNISQNYIS--------ELWTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-----LTSCM 251
L L+L N L + NL +DL N F + P+ ++
Sbjct: 64 VFKFNQELEYLDLSHNK----LVKISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQ-- 116
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGC--KNLRMLLLC 309
L + LS + E+ S +A +++S + + L ++L ++
Sbjct: 117 -LKFLGLSTTHL-EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174
Query: 310 KIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
FH + + + VL C I L KL L L + + T
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234
Query: 370 PIPGWLGNMP---NLFYIDLSYNSISGEFPKEFCGLPALALQEAK-NRADGNQLQLPLFV 425
+ + ++Y +S + G+ +L+ ++ + P
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294
Query: 426 PETKCALYNQQ---YNKLFSLPPA----------IYLRNNGLNGSIPIEIGNVMFLHVLD 472
+ N + + + + NN L ++ G++ L L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 473 LSLNNFS 479
L +N
Sbjct: 355 LQMNQLK 361
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 30/231 (12%)
Query: 2 LSRFASLDQACNQIDQETLLSLNFNASNPPLNWSFSTDCCLWEGIKCDSEAQVTHLWLPD 61
F D + + ++ + + P ++ + + + +
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY------------EIFSNMNIKNFTV 309
Query: 62 RGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG 117
G R K++ HL+ S+N L+ L L N + ++
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369
Query: 118 LGNFSKLQTFRAGFSYLSGSIPDDV-SAAASLEDISLPVNQLSGAISNGV-VNLTSLNIG 175
LQ + +S S SL +++ N L+ I + + L++
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429
Query: 176 ------------KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNF 214
KL L+ L + +N L T+L + L N +
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-14
Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 48/220 (21%)
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232
LAN L S++ + + + N +N + L+ NL +
Sbjct: 14 PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKEL 68
Query: 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292
L +N + PL L + ++ N+++ ++ + +S L ++NN L +
Sbjct: 69 HLSHNQISDLSPLK--DLTKLEELSVNRNRLKN-LNG--IPSACLSRLFLDNNELRDTDS 123
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352
L+ KNL +L + N++ I LG
Sbjct: 124 ----LIHLKNLEILSI----------RNNKLK-----------------SIVM-----LG 147
Query: 353 KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
L KL+VLDL N+IT L + + +IDL+
Sbjct: 148 FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCV 185
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 40/220 (18%), Positives = 77/220 (35%), Gaps = 26/220 (11%)
Query: 74 KLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
L + NL ++ L + + + ++ + +G+ F+ L+
Sbjct: 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS----LAGMQFFTNLKELHLSH 72
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
+ +S + + LE++S+ N+ L +LN A L L L N L
Sbjct: 73 NQIS-DL-SPLKDLTKLEELSVNRNR-----------LKNLNGIPSACLSRLFLDNNELR 119
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
L++ NL L++R N + + L L +DL N T + LT
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLK 172
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291
+ I L+G K + L + + + +
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 23/137 (16%)
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
I Q+ P L + ++ +++++ ++
Sbjct: 4 QRPTPIN-QVFP-DPGLANAVKQNLGKQSVTDLVS----QKELSGVQNFNG--------- 48
Query: 318 PDENQIT-ISS-YAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWL 375
D + I ++ F NL L + + +I + L L KL+ L + N++ + G
Sbjct: 49 -DNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNG-- 102
Query: 376 GNMPNLFYIDLSYNSIS 392
L + L N +
Sbjct: 103 IPSACLSRLFLDNNELR 119
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 45/249 (18%), Positives = 89/249 (35%), Gaps = 26/249 (10%)
Query: 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPF------LSILDFSHNY 107
V +P R L G++ ++ L L L + ++ +P L+IL+ +
Sbjct: 75 VRAARIPSRILFGALRVLG--ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132
Query: 108 FRGHCQLPSGLGNFSK--LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNG 165
+ + L + K L+ ++ + V +L + L N G
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL- 191
Query: 166 VVNLTSLNIGKLANLKSLKLHTN---SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYN 222
+++L K L+ L L + SG L L+L N+ R A +
Sbjct: 192 ---ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
Query: 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMF--LTAIRLSGNKIEEQISPTILALVSVSYL 280
L++++L + + L+ + LS N+++ +P+ L V L
Sbjct: 249 CDWPSQLNSLNLSFTGLK-----QVPKGLPAKLSVLDLSYNRLDR--NPSPDELPQVGNL 301
Query: 281 SINNNNLSN 289
S+ N +
Sbjct: 302 SLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 47/266 (17%), Positives = 87/266 (32%), Gaps = 20/266 (7%)
Query: 138 IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197
D ++ +SL + A + +L + ++ L+ L L ++G P
Sbjct: 55 EADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114
Query: 198 LMNCTN-----LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252
L+ T L N+ L+ L + + + +
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174
Query: 253 LTAIRLSGNKIEEQI----SPTILALVSVSYLSINNNNLSNITGAIGILM-GCKNLRMLL 307
L+ + LS N + + L ++ L++ N + +G L L+ L
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234
Query: 308 LCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQI 367
L +A + S L L + +K Q+P L KL VLDL N++
Sbjct: 235 LSHNSLRDAAGAPSCDWPS-----QLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRL 286
Query: 368 TGPIPGWLGNMPNLFYIDLSYNSISG 393
P +P + + L N
Sbjct: 287 DR-NP-SPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 48/319 (15%), Positives = 88/319 (27%), Gaps = 50/319 (15%)
Query: 64 LRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSK 123
L + G L +L + + L + L R L +
Sbjct: 31 LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90
Query: 124 LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSL 183
+ + L++++L +++G ++ T + L L
Sbjct: 91 VLGI------------------SGLQELTLENLEVTGTAPPPLLEATGPD------LNIL 126
Query: 184 KLHTNSLSGFLPQFLMNCTNLITLNLR----INNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
L S + +L + L+ + S L T+DL +N
Sbjct: 127 NLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 240 TGSFPLTLTSCMF----LTAIRLSGNK---IEEQISPTILALVSVSYLSINNNNLSNITG 292
G L C L + L S A V + L +++N+L + G
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWL 351
A L L L + + L VL + + P+
Sbjct: 246 APSCDW-PSQLNSLNL----------SFTGLKQVPKGLPAKLSVLDLSYNRLDR-NPS-P 292
Query: 352 GKLKKLQVLDLGSNQITGP 370
+L ++ L L N
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 20/231 (8%)
Query: 188 NSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP--- 244
N L + +L L R++ + +L + +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 245 LTLTSCMFLTAIRLSGNKIEEQISPTILALV--SVSYLSINNNNLSNITGAIGILMGC-- 300
L + L + L ++ P +L ++ L++ N + + + L
Sbjct: 89 LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 301 KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTW----LGKLKK 356
L++L + + + F L L + + G+ K
Sbjct: 149 PGLKVLSIAQAHSLNFSCE------QVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202
Query: 357 LQVLDLGSNQIT---GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPA 404
LQVL L + + G L +DLS+NS+ C P+
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 3e-13
Identities = 49/324 (15%), Positives = 93/324 (28%), Gaps = 94/324 (29%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133
+ +L L L+ N ++ + FS L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDS-------------------------FSSLG-------- 100
Query: 134 LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193
SLE + L N LS +S+ L++L L L N
Sbjct: 101 -------------SLEHLDLSYNYLS-NLSSSW-------FKPLSSLTFLNLLGNPYKTL 139
Query: 194 LPQ-FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252
+ T L L + + + +F+ L L +++ ++ P +L S
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199
Query: 253 LTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNI------TGAIGILMGCKNLRM 305
++ + L + + + SV L + + +L TG L+ R
Sbjct: 200 VSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258
Query: 306 LLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSN 365
+ + + + Q+ L ++ L L+ N
Sbjct: 259 VKI----------TDESLF---------------------QVMKLLNQISGLLELEFSRN 287
Query: 366 QITGPIPGWLGNMPNLFYIDLSYN 389
Q+ G + +L I L N
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 53/325 (16%), Positives = 97/325 (29%), Gaps = 67/325 (20%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
+L S+ G +KSL L N ++ L C NL L L N + +FS+L
Sbjct: 42 SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLG 100
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL--ALVSVSYLSI-NN 284
+L +DL N + LT + L GN + + T L L + L + N
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM 159
Query: 285 NNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEI 343
+ + I G L L + D + + + +++
Sbjct: 160 DTFTKI--QRKDFAGLTFLEELEI----------DASDLQSYEPKSLKSIQ--------- 198
Query: 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP 403
+ L L Q + ++ ++ ++L + F L
Sbjct: 199 ------------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT---FHFSELS 243
Query: 404 ALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA---------IYLRNNGL 454
+ +++ LF + + N L
Sbjct: 244 TGETNSLIKKFTFRNVKI--------------TDESLFQVMKLLNQISGLLELEFSRNQL 289
Query: 455 NGSIPIEI-GNVMFLHVLDLSLNNF 478
S+P I + L + L N +
Sbjct: 290 K-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-13
Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 42/220 (19%)
Query: 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
+ K+ S +L + L N DL+ HN+ + +
Sbjct: 18 PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTIN 74
Query: 236 NNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
N + T P++ L++ L +R+ G + P + L S++ L I+++ + +
Sbjct: 75 NIHATNYNPISGLSN---LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI--L 129
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
+ + + L IT +I L L
Sbjct: 130 TKINTLPKVNSIDLSY---------NGAIT-----------------DIMP-----LKTL 158
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394
+L+ L++ + + + + P L + +I G+
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-12
Identities = 33/233 (14%), Positives = 81/233 (34%), Gaps = 44/233 (18%)
Query: 140 DDVSAAASLEDISLPVNQLSGAISN--GVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197
+ AS +++++P + ++ G + ++ ++ +L + L +++
Sbjct: 4 EQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TG 61
Query: 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257
+ N+ L + + + + S L NL + + + T L+ LT +
Sbjct: 62 IEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNN-LSNITGAIGILMGCKNLRMLLLCKIFFHEA 316
+S + ++ I I L V+ + ++ N +++I L L+ L +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP----LKTLPELKSLNI-------- 166
Query: 317 IPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369
+ + + +G + KL L S I G
Sbjct: 167 --QFDGVH-----------------DYRG-----IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 19/191 (9%), Positives = 62/191 (32%), Gaps = 21/191 (10%)
Query: 75 LTHLCHLNLSHNHLSFLSPS-VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133
+ L + + ++ + + L+ + ++ +G+ ++ +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD----LTGIEYAHNIKDLTINNIH 77
Query: 134 LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193
+ P +S ++LE + + ++ N+ L +L L + ++
Sbjct: 78 ATNYNP--ISGLSNLERLRIMGKDVTSDKIP--------NLSGLTSLTLLDISHSAHDDS 127
Query: 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMF 252
+ + + +++L N D+ TL L ++++ + +
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDFPK--- 182
Query: 253 LTAIRLSGNKI 263
L + I
Sbjct: 183 LNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 44/160 (27%)
Query: 319 DENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN 377
++ I+ +L + + N + + ++ L + + T P +
Sbjct: 31 GQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISG 86
Query: 378 MPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY 437
+ NL + + ++ + GL +L L
Sbjct: 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTL------------------------------ 116
Query: 438 NKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNN 477
+ + ++ + SI +I + ++ +DLS N
Sbjct: 117 ---------LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 9e-13
Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 27/197 (13%)
Query: 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257
N I + +N ++ + L + T+ T + L +
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLE 69
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
L N+I + ++P + L ++ L ++ N L N++ + G ++++ L L
Sbjct: 70 LKDNQITD-LAP-LKNLTKITELELSGNPLKNVSA----IAGLQSIKTLDL--------- 114
Query: 318 PDENQITISSY--AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWL 375
QIT + NL VL + +I P L L LQ L +G+ Q++ P L
Sbjct: 115 -TSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169
Query: 376 GNMPNLFYIDLSYNSIS 392
N+ L + N IS
Sbjct: 170 ANLSKLTTLKADDNKIS 186
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 61/327 (18%), Positives = 117/327 (35%), Gaps = 70/327 (21%)
Query: 73 GKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
L + L+ ++ + + L L+ N + L L
Sbjct: 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI-------TDLAPLKNLT----- 85
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
+ ++ L N L +S I L ++K+L L + +
Sbjct: 86 ----------------KITELELSGNPLKN-VS---------AIAGLQSIKTLDLTSTQI 119
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL-TLTS 249
+ P L +NL L L +N ++S + L NL + +GN + PL L+
Sbjct: 120 TDVTP--LAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDLTPLANLSK 174
Query: 250 CMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309
LT ++ NKI + ISP + +L ++ + + NN +S+++ L NL ++ L
Sbjct: 175 ---LTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTL- 224
Query: 310 KIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368
IT + NLVV + +KG + S +T
Sbjct: 225 ---------TNQTITNQPVFYNNNLVVPNV----VKGPSGAPIAPATISDNGTYASPNLT 271
Query: 369 GPIPGWLGNMPNLFYIDLSYNSISGEF 395
+ ++ N+ F +++ + + F
Sbjct: 272 WNLTSFINNVSYTFNQSVTFKNTTVPF 298
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 28/236 (11%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRG 110
+T L G+ +I L +L L L N ++ L+P ++ ++ L+ S N +
Sbjct: 42 GITTLSAFGTGVT-TIEGV-QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99
Query: 111 HCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLT 170
S + ++T + ++ P ++ ++L+ + L +NQ++ IS
Sbjct: 100 ----VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NIS------- 145
Query: 171 SLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230
+ L NL+ L + +S L N + L TL N D+S ++L NL
Sbjct: 146 --PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS-DIS--PLASLPNLI 198
Query: 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286
+ L NN + P L + L + L+ I + V + +
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPVFYNNNLVVPNVVKGPSG 251
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 53/224 (23%), Positives = 73/224 (32%), Gaps = 41/224 (18%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
NLT+L + L L N L F LM T L LNL L TL
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLP 77
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNN 286
L T+DL +N S PL + LT + +S N++ + L L + L + N
Sbjct: 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNE 135
Query: 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKG 345
L + G+L L L L N +T + +
Sbjct: 136 LKTLPP--GLLTPTPKLEKLSL----------ANNNLTELPAGLLN-------------- 169
Query: 346 QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
L+ L L L N + IP L + L N
Sbjct: 170 -------GLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 44/195 (22%), Positives = 67/195 (34%), Gaps = 39/195 (20%)
Query: 81 LNLSHNHLSFLSPSV----PFLSILDFSHNY------FRGHCQLPSGLGNFSKLQTFRAG 130
L+LS N L S + L+ L+ L + + ++LQ+
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95
Query: 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL 190
L +L + + N+L+ ++ G + L L+ L L N L
Sbjct: 96 GQTLP-----------ALTVLDVSFNRLT-SLPLGALR-------GLGELQELYLKGNEL 136
Query: 191 SGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----GSFPLT 246
P L L L+L NN +L A + L NL T+ L N+ G F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195
Query: 247 LTSCMFLTAIRLSGN 261
L L L GN
Sbjct: 196 L-----LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 41/192 (21%)
Query: 49 DSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLS---PSVPFLSILDFSH 105
++T L L L + L L L+LSHN L L ++P L++LD S
Sbjct: 52 MPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109
Query: 106 NYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNG 165
N LP G L L+++ L N+L + G
Sbjct: 110 NRLT---SLPLGA--LRGL---------------------GELQELYLKGNELK-TLPPG 142
Query: 166 VVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFST 225
++ L+ L L N+L+ L NL TL L+ N+ + F
Sbjct: 143 LLT-------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF-G 193
Query: 226 LHNLHTIDLGNN 237
H L L N
Sbjct: 194 SHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 42/195 (21%), Positives = 61/195 (31%), Gaps = 37/195 (18%)
Query: 275 VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334
+ L ++ N L + LM L L L D ++T L
Sbjct: 31 KDTTILHLSENLLYTFSL--ATLMPYTRLTQLNL----------DRAELTKLQ-VDGTLP 77
Query: 335 VLGIGNCEIKG--QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
VLG + +P L L VLD+ N++T G L + L + L N +
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 393 GEFPKEFCGLPAL---ALQEAKNRADGNQLQ-LP--LFVPETKCALYNQQYNKLFSLPPA 446
P P L +L N L LP L Q N L+++P
Sbjct: 138 TLPPGLLTPTPKLEKLSLA-------NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 447 ---------IYLRNN 452
+L N
Sbjct: 191 FFGSHLLPFAFLHGN 205
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 36/242 (14%), Positives = 64/242 (26%), Gaps = 37/242 (15%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
+T + N L+ L +L + + N+ + A FS L
Sbjct: 20 KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 228 NLHTIDLGNNNFTGSFPL-TLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSIN-NN 285
LH I + N + L + +S I+ + + L I N
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139
Query: 286 NLSNI-TGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEI 343
N+ I + L +L L ++N I I + AF
Sbjct: 140 NIHTIERNSFVGL--SFESVILWL----------NKNGIQEIHNSAFNG----------- 176
Query: 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP 403
+ ++ +N + +D+S I L
Sbjct: 177 ----------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226
Query: 404 AL 405
L
Sbjct: 227 KL 228
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 34/239 (14%), Positives = 61/239 (25%), Gaps = 45/239 (18%)
Query: 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG- 130
+ L L + L ++ S N L+ A
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN---------------DVLEVIEADV 74
Query: 131 FSYLSGSIPDDVSAAASLEDISLP-VNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
FS L L +I + N L I+ L NL+ L +
Sbjct: 75 FSNLP-----------KLHEIRIEKANNLL-YINPEA-------FQNLPNLQYLLISNTG 115
Query: 190 LSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL-HNLHTIDLGNNNFTGSFPLTLT 248
+ ++ + L+++ N + +F L + L N
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175
Query: 249 SCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRML 306
N +EE + + L I+ + ++ L K LR
Sbjct: 176 GTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR 231
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 33/244 (13%), Positives = 63/244 (25%), Gaps = 46/244 (18%)
Query: 71 FTGKLTHLCHLNLSHNH-LSFLSPSVPFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFR 128
F+G L + +S N L + V F +L + + L
Sbjct: 50 FSG-FGDLEKIEISQNDVLEVIEADV------------FSNLPKLHEIRIEKANNLLYIN 96
Query: 129 AG-FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187
F L +L+ + + + +L ++ L +
Sbjct: 97 PEAFQNLP-----------NLQYLLISNTGIK--------HLPDVHKIHSLQKVLLDIQD 137
Query: 188 NSLSGFLPQ--FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPL 245
N + + F+ + L L N + ++ F+ NNN
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPND 196
Query: 246 TLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLR 304
+ +S +I + L L + S N + L L
Sbjct: 197 VFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLK------KLPTLEKLVALM 249
Query: 305 MLLL 308
L
Sbjct: 250 EASL 253
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 45/228 (19%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
LT++ A+ K L L +N LS + T L L L N + L A F L
Sbjct: 27 KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 228 NLHTIDLGNNNFTGSFPL----TLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSI 282
NL T+ + +N + P+ L + L +RL N+++ + P + L ++YLS+
Sbjct: 86 NLETLWVTDNKLQ-ALPIGVFDQLVN---LAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140
Query: 283 NNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNLVVLGIGNC 341
N L ++ G+ +L+ L L NQ+ + AF
Sbjct: 141 GYNELQSLPK--GVFDKLTSLKELRL----------YNNQLKRVPEGAFD---------- 178
Query: 342 EIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
KL +L+ L L +NQ+ G ++ L + L N
Sbjct: 179 -----------KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 45/193 (23%), Positives = 61/193 (31%), Gaps = 41/193 (21%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSVPF----LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
+LT L L L+ N L L + L L + N KLQ
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN----------------KLQALPI 102
Query: 130 G-FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
G F L +L ++ L NQL ++ V + L L L L N
Sbjct: 103 GVFDQLV-----------NLAELRLDRNQLK-SLPPRVFD-------SLTKLTYLSLGYN 143
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLT 248
L T+L L L N + + F L L T+ L NN
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 249 SCMFLTAIRLSGN 261
S L ++L N
Sbjct: 203 SLEKLKMLQLQEN 215
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 48/353 (13%), Positives = 105/353 (29%), Gaps = 46/353 (13%)
Query: 74 KLTHLCHLNLSHN--------HLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLG------ 119
+L L+L + LS + L L+ S S
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS-----CLASEVSFSALERLVT 208
Query: 120 NFSKLQTFRAGFSYLSGSIPDD-----VSAAASLEDISLPVNQLSGAISNGVVNLTSLNI 174
L++ + L+ ++P + + A LE++ + + V + S+ +
Sbjct: 209 RCPNLKSLK-----LNRAVPLEKLATLLQRAPQLEELGT--GGYTAEVRPDVYSGLSVAL 261
Query: 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
L+ L +++ +LP C+ L TLNL + L + +
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL------- 287
+ + ++C L +R+ ++ L + +S+ L
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381
Query: 288 SNIT--GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA-----FQNLVVLGIGN 340
+T I I N+ LC I + + ++L L +
Sbjct: 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441
Query: 341 CEIKGQIPTWLGKLKKLQVLDLGSNQITGP-IPGWLGNMPNLFYIDLSYNSIS 392
KK+++L + + + L +L +++
Sbjct: 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-11
Identities = 75/543 (13%), Positives = 150/543 (27%), Gaps = 164/543 (30%)
Query: 8 LDQACNQIDQ--ETLLSLNFNASNPPLNWSFSTDCCLWEGIK--CDSEAQVTHLWLPDRG 63
L + + + E +L +N+ + L IK + +T +++ R
Sbjct: 72 LSKQEEMVQKFVEEVLRINYK-------F-------LMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 64 -LRGSIYPFTGKLT---HLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLG 119
L F K +L L L L P+ + I G+
Sbjct: 118 RLYNDNQVFA-KYNVSRLQPYLKL-RQALLELRPA-KNVLI----------D-----GVL 159
Query: 120 NFSK-------------LQTFRAGFSYLS-GSIPDDVSAAASLED----ISLPVNQLSGA 161
K +L+ + + L+ I S
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 162 ISNGVVNLTSLNIGKLANLKSLKLHTNSL--------SGFLPQFLMNCTNLITLNLRINN 213
SN + + S+ +L L K + N L + F ++C L+T
Sbjct: 220 SSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR----- 273
Query: 214 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ---ISPT 270
+F L T + ++ + + + L + + + +P
Sbjct: 274 ---FKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 271 ILALVSVS----------YLSINNNNLSNITGAIGILMGCKNL------RMLLLCKIFFH 314
L++++ S + +N + L+ I I L +M +F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKMFDRLSVF-- 381
Query: 315 EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPG 373
P I +L + ++ + KL K +++ + T IP
Sbjct: 382 ---PPSAHIPTI--------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 374 ----WLGNMPNLFY-----IDLSYNSISGEFPKEFCGLPALALQEAKNRADG---NQLQL 421
+ N + +D YN PK F D + +
Sbjct: 431 IYLELKVKLENEYALHRSIVD-HYN-----IPKTFDSD-----DLIPPYLDQYFYSHI-- 477
Query: 422 PLFVPETKCA--LYNQQYNKLFSLPPAIYL---------RNNGLNGSIPIEIGNVMFLHV 470
L N ++ + +L ++L R++ + I N +
Sbjct: 478 ---------GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---- 524
Query: 471 LDL 473
L
Sbjct: 525 QQL 527
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 3e-10
Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 25/224 (11%)
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232
+ L +L + L L +C L L + + L +
Sbjct: 344 DSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTI----ILLMRALDPL 398
Query: 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292
L M + +K + S + V L + + +L+ +
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH 458
Query: 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQIT---ISSYAFQNLVVLGIGNCEIKGQIPT 349
L + L L N++ + A + L VL + ++ +
Sbjct: 459 ----LEQLLLVTHLDL----------SHNRLRALPPALAALRCLEVLQASDNALE-NVDG 503
Query: 350 WLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYIDLSYNSIS 392
+ L +LQ L L +N++ L + P L ++L NS+
Sbjct: 504 -VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 1e-07
Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 50/249 (20%)
Query: 150 DISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSL--SGFLPQFLMNCTNLITL 207
++S+ + + + L L L ++ L +L + + L + L +
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 414
Query: 208 -NLRINNFRGDLSAYNFS------TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG 260
+R S + ++ + L + + T L + +T + LS
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSH 472
Query: 261 NKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320
N++ + P + AL + L ++N L N+ G + L+ LLLC
Sbjct: 473 NRLRA-LPPALAALRCLEVLQASDNALENVDG----VANLPRLQELLLC----------N 517
Query: 321 NQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN--- 377
N++ S+ I+ L +L +L+L N + G
Sbjct: 518 NRLQQSA--------------AIQP-----LVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 557
Query: 378 -MPNLFYID 385
+P++ I
Sbjct: 558 MLPSVSSIL 566
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 7e-10
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 33/188 (17%)
Query: 202 TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN 261
+ L+L NN + + + L NLH++ L +N+ L + LS N
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 262 KIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320
+ + + + L ++ L + NN++ + L+ L L +
Sbjct: 99 HLHT-LDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMAQLQKLYL----------SQ 145
Query: 321 NQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMP 379
NQI+ ++ KL KL +LDL SN++ L +P
Sbjct: 146 NQISRFPVELIKD------------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Query: 380 NLFYIDLS 387
L
Sbjct: 188 AWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 38/171 (22%)
Query: 253 LTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
+ LS N + + L ++ L +++N+L+ I + + NLR L L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI--SSEAFVPVPNLRYLDL--- 95
Query: 312 FFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP 370
N + + + F +L L+VL L +N I
Sbjct: 96 -------SSNHLHTLDEFLFSDLQ---------------------ALEVLLLYNNHIVVV 127
Query: 371 IPGWLGNMPNLFYIDLSYNSISGEFPKE-FCGLPALALQEAKNRADGNQLQ 420
+M L + LS N IS FP E L + N+L+
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD-LSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 168 NLTSLNIG----KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223
NL+ L +L NL SL L N L+ + + NL L+L N+ L + F
Sbjct: 50 NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLF 108
Query: 224 STLHNLHTIDLGNNNFT----GSFPLTLTSCMFLTAIRLSGNK---IEEQISPTILALVS 276
S L L + L NN+ +F + L + LS N+ ++ L
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFE-DMAQ---LQKLYLSQNQISRFPVELIKDGNKLPK 164
Query: 277 VSYLSINNNNLSNI 290
+ L +++N L +
Sbjct: 165 LMLLDLSSNKLKKL 178
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 43/177 (24%), Positives = 63/177 (35%), Gaps = 46/177 (25%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
+LT+L L LSHNHL+F+S P L LD S N L T
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN----------------HLHTLDE 105
Query: 130 G-FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
FS L +LE + L N + + +A L+ L L N
Sbjct: 106 FLFSDLQ-----------ALEVLLLYNNHIV-VVDRNAFE-------DMAQLQKLYLSQN 146
Query: 189 SLSGFLPQFLMNC---TNLITLNLRINNFRGDLSAYNFSTLHNL--HTIDLGNNNFT 240
+S F + + + L+ L+L N + L + L + + L NN
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 44/237 (18%), Positives = 73/237 (30%), Gaps = 43/237 (18%)
Query: 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236
+ ++LKL L N N+ + + I+ L +++F L + I++ N
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 237 NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIG 295
LT I P L L + +L I N L
Sbjct: 90 TRN-------LTY-----------------IDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Query: 296 ILMGCKNLRMLLLCKIFFHEAIPDENQIT-ISSYAFQNL----VVLGIGNCEIKGQIPTW 350
+ +L + D +T I AFQ L + L + N + +
Sbjct: 126 -VYSTDIFFILEIT---------DNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174
Query: 351 LGKLKKLQVLDLGSNQITGPIPGWL--GNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
KL + L N+ I G +D+S S++ K L L
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 45/245 (18%), Positives = 72/245 (29%), Gaps = 53/245 (21%)
Query: 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130
L L HL + P +S + S + LQ +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID---------------VTLQQLESH 74
Query: 131 -FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
F LS + I + + I + +L LK L +
Sbjct: 75 SFYNLS-----------KVTHIEIRNTRNLTYIDPDA-------LKELPLLKFLGIFNTG 116
Query: 190 LSGFLPQ-FLMNCTNLITLNLRINNFRGDLSAYNFSTLHN-LHTIDLGNNNFT----GSF 243
L F + + L + N + + F L N T+ L NN FT +F
Sbjct: 117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176
Query: 244 PLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSV-SYLSINNNNLSNITGAIGILMGCK 301
T L A+ L+ NK I + S S L ++ +++ + L K
Sbjct: 177 NGT-----KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLK 229
Query: 302 NLRML 306
L
Sbjct: 230 ELIAR 234
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 51/307 (16%), Positives = 99/307 (32%), Gaps = 77/307 (25%)
Query: 147 SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG----FLPQFLMNCT 202
S+E SL ++ ++ ++ ++ + + ++K + L N++ +L + + +
Sbjct: 5 SIEGKSLKLDAITTE---DEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 203 NLITLNLRINNFRGDLS----------AYNFSTLHNLHTIDLGNNNFT--GSFPLT--LT 248
+L + F G + LHT+ L +N F PL L+
Sbjct: 61 DLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 249 SCMFLTAIRLSGNKI-------------EEQISPTILALVSVSYLSINNNNLSNITGAIG 295
L + L N + E ++ + + N L N
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSMKE 178
Query: 296 I---LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352
+ L + + QN GI I+ + L
Sbjct: 179 WAKTFQSHRLLHTVKMV---------------------QN----GIRPEGIEHLLLEGLA 213
Query: 353 KLKKLQVLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL--A 406
++L+VLDL N T + L + PNL + L+ +S G A+ A
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR------GAAAVVDA 267
Query: 407 LQEAKNR 413
+ +N
Sbjct: 268 FSKLENI 274
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 47/268 (17%), Positives = 76/268 (28%), Gaps = 58/268 (21%)
Query: 147 SLEDISLPVNQLSGAISNGVVNLTSLN--IGKLANLKSLKLHTNSLSG----FLPQFLMN 200
LE L L + K L +++L N+ L FL
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 201 CTNLITLNLRINNFRGDLSA-------------YNFSTLHNLHTIDLGNNNFT--GSFPL 245
T L L L N G + L +I G N
Sbjct: 121 HTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 246 --TLTSCMFLTAIRLSGNKIEEQISPTILALV-----SVSYLSINNNNLSNITGAIGI-- 296
T S L +++ N I + +L + L + +N ++ G+ +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-LGSSALAI 238
Query: 297 -LMGCKNLRMLLLCKIFFHEAIPDENQIT----------ISSYAFQNLVVLGIGNCEIKG 345
L NLR L L ++ ++ S L L + EI+
Sbjct: 239 ALKSWPNLRELGL----------NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288
Query: 346 QIPTWLG-----KLKKLQVLDLGSNQIT 368
L K+ L L+L N+ +
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 42/236 (17%), Positives = 69/236 (29%), Gaps = 52/236 (22%)
Query: 74 KLTHLCHLNLSHNHL---------SFLSPSVPFLSILDFSHNYFR-----------GHCQ 113
K L + LS N FLS P L L +N
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP-LEHLYLHNNGLGPQAGAKIARALQELA 150
Query: 114 LPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAA---------SLEDISLPVNQLSGAISN 164
+ N L++ + ++ S L + + N +
Sbjct: 151 VNKKAKNAPPLRSI-----ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE--- 202
Query: 165 GVVNLTSLNIGKLANLKSLKLHTNSLSG----FLPQFLMNCTNLITLNLRINNFRGD--- 217
G+ +L + LK L L N+ + L L + NL L L
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262
Query: 218 --LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM-----FLTAIRLSGNKIEEQ 266
+ A++ L T+ L N TL + + L + L+GN+ E+
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 61/378 (16%), Positives = 108/378 (28%), Gaps = 77/378 (20%)
Query: 75 LTHLCHLNLSHN--------HLSFLSPSVPFLSILDFSHNYF--RGHCQLPSGLGNFS-K 123
L + L +S P L+ L+ N G + GL S K
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86
Query: 124 LQTFRAGFSYLSGSIPDDVSAAA---------SLEDISLPVNQLSGAISNGVVNLTSLNI 174
+Q L +L+++ L N L A G+ L +
Sbjct: 87 IQKLS-----LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA---GLQLLCEGLL 138
Query: 175 GKLANLKSLKLHTNSLS----GFLPQFLMNCTNLITLNLRINNFRGD----LSAYNFSTL 226
L+ L+L SLS L L + L + N+ L +
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198
Query: 227 HNLHTIDLGNNNFT----GSFPLTLTSCMFLTAIRLSGNKIE----EQISPTILA-LVSV 277
L + L + T + S L + L NK+ ++ P +L +
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258
Query: 278 SYLSINNNNLSNITGAIGI---LMGCKNLRMLLLCKIFFHEAIPDENQITIS-------- 326
L I ++ G + L ++L+ L L N++
Sbjct: 259 RTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAG----------NELGDEGARLLCET 307
Query: 327 -SYAFQNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIPGWLG----- 376
L L + +C + L + + L L + +N++ L
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367
Query: 377 NMPNLFYIDLSYNSISGE 394
L + L+ +S
Sbjct: 368 PGSVLRVLWLADCDVSDS 385
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 54/348 (15%), Positives = 110/348 (31%), Gaps = 76/348 (21%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY 133
L L L+LS N L + L L +L+ + +
Sbjct: 111 TLPTLQELHLSDNLLG--DAGLQLLC---------------EGLLDPQCRLEKLQLEYCS 153
Query: 134 LSGSIPDDVSAA----ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS 189
LS + + +++ +++++ N ++ A GV L L++LKL +
Sbjct: 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEA---GVRVLCQGLKDSPCQLEALKLESCG 210
Query: 190 LS----GFLPQFLMNCTNLITLNLRINNFRGD----LSAYNFSTLHNLHTIDLGNNNFT- 240
++ L + + +L L L N L L T+ + T
Sbjct: 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270
Query: 241 ---GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV-----SVSYLSINNNNLSNITG 292
G L + L + L+GN++ ++ + + + + L + + + +
Sbjct: 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA-AC 329
Query: 293 AIGI---LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV-VLGIGNCEIKGQIP 348
L + L L + N++ + + L LG
Sbjct: 330 CSHFSSVLAQNRFLLELQI----------SNNRLEDA--GVRELCQGLGQPGS------- 370
Query: 349 TWLGKLKKLQVLDLGSNQIT----GPIPGWLGNMPNLFYIDLSYNSIS 392
L+VL L ++ + L +L +DLS N +
Sbjct: 371 -------VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 52/325 (16%), Positives = 104/325 (32%), Gaps = 82/325 (25%)
Query: 74 KLTHLCHLNLSHNHLS---------FLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKL 124
L +S+N ++ L S L L G+ +
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC----------GVTS---- 213
Query: 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLK 184
L G + ++ ASL +++L N+L G+ L + + L++L
Sbjct: 214 ----DNCRDLCGIV----ASKASLRELALGSNKLGDV---GMAELCPGLLHPSSRLRTLW 262
Query: 185 LHTNSLS----GFLPQFLMNCTNLITLNLRINNFRGD----LSAYNFSTLHNLHTIDLGN 236
+ ++ G L + L +L L+L N + L L ++ + +
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322
Query: 237 NNFTG----SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS-----YLSINNNNL 287
+FT F L FL +++S N++E+ + + L + + ++
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382
Query: 288 SNITGAIGI---LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV-VLGIGNCEI 343
S+ + + L+ +LR L L N + + LV + C
Sbjct: 383 SD-SSCSSLAATLLANHSLRELDL----------SNNCLGDA--GILQLVESVRQPGC-- 427
Query: 344 KGQIPTWLGKLKKLQVLDLGSNQIT 368
L+ L L +
Sbjct: 428 ------------LLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 32/212 (15%), Positives = 64/212 (30%), Gaps = 43/212 (20%)
Query: 199 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT----GSFPLTLTSCMFLT 254
M+ ++ +L+++ A L + L + T L L
Sbjct: 1 MS-LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 255 AIRLSGNKIEEQISPTILALVSVS-----YLSINNNNLSNITGAIGI---LMGCKNLRML 306
+ L N++ + +L + LS+ N L+ G + L L+ L
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLSSTLRTLPTLQEL 118
Query: 307 LLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366
L +N + + Q L + +L+ L L
Sbjct: 119 HL----------SDNLLGDA--GLQLLCEGLLDPQ-------------CRLEKLQLEYCS 153
Query: 367 IT----GPIPGWLGNMPNLFYIDLSYNSISGE 394
++ P+ L P+ + +S N I+
Sbjct: 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEA 185
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 6/139 (4%)
Query: 171 SLNIGKLANLKSLKLHTNSLS-GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL 229
L A ++ L L + G + NL L+L IN +S N L L
Sbjct: 17 ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSL-INVGLISVS--NLPKLPKL 73
Query: 230 HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLS 288
++L N G + LT + LSGNK+++ + L L + L + N ++
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Query: 289 NITG-AIGILMGCKNLRML 306
N+ + L L
Sbjct: 134 NLNDYRESVFKLLPQLTYL 152
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 25/143 (17%)
Query: 253 LTAIRLSGNKI-EEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
+ + L K + +I V++ +LS+ N L +++ L L+ L L
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPKLKKLELS-- 79
Query: 312 FFHEAIPDENQIT----ISSYAFQNLVVLGIGNCEIKG-QIPTWLGKLKKLQVLDLGSNQ 366
EN+I + + NL L + ++K L KL+ L+ LDL + +
Sbjct: 80 --------ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
Query: 367 ITGPIPGW----LGNMPNLFYID 385
+T + + +P L Y+D
Sbjct: 132 VTN-LNDYRESVFKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 5e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
F NL L + N + + L KL KL+ L+L N+I G + +PNL +++LS N
Sbjct: 48 FVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105
Query: 390 SIS 392
+
Sbjct: 106 KLK 108
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 53/426 (12%), Positives = 112/426 (26%), Gaps = 52/426 (12%)
Query: 12 CNQIDQETLLSLNFNASNPPLNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPF 71
+ L+ N+ P S + + + + + D L
Sbjct: 83 KPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHF------RRMIVSDLDLDRLAKAR 136
Query: 72 TGKLTHL----CHLNLSHNHLSFLSPSVPFLSILDFSHNYFR--GHCQLPSGLGNFSKLQ 125
L L C + + L + + L + F L + + L+
Sbjct: 137 ADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLE 195
Query: 126 TFRAGFSYLSGSIPDDVSAAA----SLEDISLPVNQLS--GAISNGVVNLTSLNIGKLAN 179
+ + P D+ A SL + + ++ NL G L
Sbjct: 196 VLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255
Query: 180 LKSLKLHTNSLSG---------------FLPQFLMNCTNLITLNLRINNFRGDLSAYNFS 224
+ +L +P + L+L +
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315
Query: 225 TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG--NKIEEQISPTILALVSVSYLSI 282
NL ++ N + C L +R+ ++ + +++ + L+
Sbjct: 316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 283 NNNNL-------SNIT--GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333
L S+IT I KNL L + E I D
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 334 -----VVLGIGNCEIKGQIPTWLGKL-KKLQVLDLGSNQITGP-IPGWLGNMPNLFYIDL 386
+ + +++G+ ++ + LG + + + PNL +++
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495
Query: 387 SYNSIS 392
S
Sbjct: 496 RGCCFS 501
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 59/369 (15%), Positives = 97/369 (26%), Gaps = 65/369 (17%)
Query: 75 LTHLCHLNLSHNH--------LSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126
T L LN L ++ + L + +L + L+
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF---EILELVGFFKAAANLEE 247
Query: 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG-----AISNGVVNLTSLN-------- 173
F G +P+ + G + + L+
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307
Query: 174 ------IGKLANLKSLKL-HTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYN---- 222
I K NL+ L+ + G L C L L + +
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRG-LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
Query: 223 -------FSTLHNLHTIDLGNNNFT-GSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274
L + + ++ T S T L RL EE+I+ L
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD- 425
Query: 275 VSVSYLSINNNNL---------SNIT--GAIGILMGCKNLRMLLLCKIFFHEAIPDENQI 323
V L I L +T G I N+R +LL + DE +
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG----YVGESDEGLM 481
Query: 324 TISSYAFQNLVVLGIGNCEIKGQ-IPTWLGKLKKLQVLDLGSNQITGPIPGWLG---NMP 379
S NL L + C + I + KL L+ L + + + +
Sbjct: 482 EFSRGC-PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540
Query: 380 NLFYIDLSY 388
N+ I
Sbjct: 541 NIELIPSRR 549
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 176 KLANLKSLKLHTNSLS-GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
+++K L L + + G L L L+ IN ++ N L+ L ++L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLST-INVGLTSIA--NLPKLNKLKKLEL 71
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITG- 292
+N +G + C LT + LSGNKI++ + L L ++ L + N ++N+
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131
Query: 293 AIGILMGCKNLRML 306
+ L L
Sbjct: 132 RENVFKLLPQLTYL 145
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 167 VNLTSL-NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFST 225
V LTS+ N+ KL LK L+L N +SG L C NL LNL N + +
Sbjct: 52 VGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111
Query: 226 LHNLHTIDLGNN 237
L NL ++DL N
Sbjct: 112 LENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
F+ L L N + I L KL KL+ L+L N+++G + PNL +++LS N
Sbjct: 41 FEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98
Query: 390 SIS 392
I
Sbjct: 99 KIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 7e-04
Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 25/143 (17%)
Query: 253 LTAIRLSGNKIEEQISPTILA-LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
+ + L ++ E + + +LS N L++I L L+ L L
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN----LPKLNKLKKLELS-- 72
Query: 312 FFHEAIPDENQIT----ISSYAFQNLVVLGIGNCEIKG-QIPTWLGKLKKLQVLDLGSNQ 366
+N+++ + + NL L + +IK L KL+ L+ LDL + +
Sbjct: 73 --------DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
Query: 367 ITGPIPGW----LGNMPNLFYID 385
+T + + +P L Y+D
Sbjct: 125 VTN-LNDYRENVFKLLPQLTYLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 12/149 (8%)
Query: 166 VVNLTSLNIGK------LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLS 219
+V LT+ I + + L L + + ++ N R L
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD 58
Query: 220 AYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILA-LVSVS 278
F L L T+ + NN + LT + L+ N + E LA L S++
Sbjct: 59 --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 279 YLSINNNNLSNITG-AIGILMGCKNLRML 306
YL I N ++N + ++ +R+L
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVL 145
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 280 LSINNNNLSNITGAIGILMGCKNLRMLLL--CKIFFHEAIPDENQITISSYAFQNLVVLG 337
+ + + R L L KI I +
Sbjct: 2 VKLTAELIEQAAQ----YTNAVRDRELDLRGYKI---------PVIENLGATLDQFDAID 48
Query: 338 IGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392
+ EI+ ++ L++L+ L + +N+I G +P+L + L+ NS+
Sbjct: 49 FSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 8e-05
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 25/148 (16%)
Query: 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRML 306
T+ + + L G KI I L + ++N + + G + L+ L
Sbjct: 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTL 69
Query: 307 LLCKIFFHEAIPDENQIT----ISSYAFQNLVVLGIGNCEIKG-QIPTWLGKLKKLQVLD 361
L+ N+I A +L L + N + L LK L L
Sbjct: 70 LVNN----------NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 362 LGSNQITGPIPGW----LGNMPNLFYID 385
+ N +T + + +P + +D
Sbjct: 120 ILRNPVTN-KKHYRLYVIYKVPQVRVLD 146
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 16/155 (10%)
Query: 163 SNGVVN-----LTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGD 217
SN +V+ LT + + ++L N++ P L ++L N +
Sbjct: 12 SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-E 70
Query: 218 LSAYNFSTLHNLHTIDLGNNNFTGSFPLT----LTSCMFLTAIRLSGNKIEEQISPTILA 273
L+ F L +L+++ L N T P + L S L + L+ NKI
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFS---LQLLLLNANKINCLRVDAFQD 126
Query: 274 LVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLL 308
L +++ LS+ +N L I A G + ++ + L
Sbjct: 127 LHNLNLLSLYDNKLQTI--AKGTFSPLRAIQTMHL 159
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 21/142 (14%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGV----VNLTSLNIG-------------KLAN 179
IP ++ ++ +I L N + I G L +++ L +
Sbjct: 25 EIPTNLPE--TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 180 LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
L SL L+ N ++ +L L L N L F LHNL+ + L +N
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKL 140
Query: 240 TGSFPLTLTSCMFLTAIRLSGN 261
T + + + L+ N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 39/163 (23%)
Query: 81 LNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG 136
+ L N + + P L +D S+N +L F L+
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDA--FQGLR----------- 80
Query: 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196
SL + L N+++ + + L +L+ L L+ N ++
Sbjct: 81 ----------SLNSLVLYGNKIT-ELPKSL-------FEGLFSLQLLLLNANKINCLRVD 122
Query: 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
+ NL L+L N + ++ FS L + T+ L N F
Sbjct: 123 AFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 27/148 (18%)
Query: 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317
IE+ + T+ L + +L+++ NN+ I+ L G +NLR+L L
Sbjct: 32 GMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSL--------- 77
Query: 318 PDENQIT-ISSYA--FQNLVVLGIGNCEI---KGQIPTWLGKLKKLQVLDLGSNQITGPI 371
N I I + L L I +I G + KL L+VL + +N+IT
Sbjct: 78 -GRNLIKKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWG 131
Query: 372 P-GWLGNMPNLFYIDLSYNSISGEFPKE 398
L + L + L+ N + ++ +
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLYNDYKEN 159
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 173 NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232
++ + NL+ L L N + + L L + N LS L NL +
Sbjct: 65 SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SLS--GIEKLVNLRVL 120
Query: 233 DLGNNNFTGSFPL-TLTSCMFLTAIRLSGNKIEEQISP 269
+ NN T + L + L + L+GN +
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 25/131 (19%), Positives = 37/131 (28%), Gaps = 37/131 (28%)
Query: 262 KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDEN 321
EE+ S V + + I L K + L L N
Sbjct: 13 IFEERKSVVATEAEKVE----LHGMIPPIEKMDATLSTLKACKHLAL----------STN 58
Query: 322 QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNL 381
I +I L ++ L++L LG N I I L
Sbjct: 59 NIE-----------------KISS-----LSGMENLRILSLGRNLIKK-IENLDAVADTL 95
Query: 382 FYIDLSYNSIS 392
+ +SYN I+
Sbjct: 96 EELWISYNQIA 106
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 5e-06
Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 18/249 (7%)
Query: 171 SLNIGKLANLKSLKLHTNSLSGFLPQFLM----NCTNLITLNLRINNFRGDLSAYNFSTL 226
+L+ L S + + + + ++L + S
Sbjct: 58 NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117
Query: 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS-----YLS 281
L + L + TL L + LSG S L + S L+
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSSCSRLDELN 174
Query: 282 INN-NNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGN 340
++ + + + + + + L L + + + T+ NLV L + +
Sbjct: 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGY--RKNLQKSDLSTLVRR-CPNLVHLDLSD 231
Query: 341 CE-IKGQIPTWLGKLKKLQVLDLGS-NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKE 398
+K +L LQ L L I LG +P L + + G
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291
Query: 399 FCGLPALAL 407
LP L +
Sbjct: 292 KEALPHLQI 300
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 28/146 (19%)
Query: 137 SIPDDVSAAASLEDISLPVNQLS----GAISNGVVNLTSLNIG-------------KLAN 179
IP+ + ++ L N+ + I + L +N +
Sbjct: 25 KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 180 LKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNF 239
+ + L +N L + +L TL LR N + +F L ++ + L +N
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141
Query: 240 T----GSFPLTLTSCMFLTAIRLSGN 261
T G+F TL S L+ + L N
Sbjct: 142 TTVAPGAFD-TLHS---LSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 40/146 (27%)
Query: 74 KLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129
KL L +N S+N ++ + ++ + + N +L+ +
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN----------------RLENVQH 98
Query: 130 G-FSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN 188
F L SL+ + L N+++ + N L++++ L L+ N
Sbjct: 99 KMFKGLE-----------SLKTLMLRSNRIT-CVGNDSFI-------GLSSVRLLSLYDN 139
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNF 214
++ P +L TLNL N F
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 301 KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK---LKKL 357
+ L + + + + + + + S F NL LGI + E + + + L +L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281
Query: 358 QVLDLGSNQITG----PIPGWLGNMPNLFYIDLSYNSISGE 394
+ +D+ + +T + + + +L +I++ YN +S E
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT 246
T + L NL L + L + L L + + + P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
L+ + LS N + E +S + +S+ L ++ N L
Sbjct: 76 FHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 54/344 (15%), Positives = 109/344 (31%), Gaps = 63/344 (18%)
Query: 76 THLCHLNLSHNHLS---------FLSPSVPFLSILDFSHNYF--RGHCQLPSGL-GNFSK 123
+ L+LS N+L + + ++ L+ S N + +L L +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 124 LQTFRAGFSYLSGSIPDDVSAAA----------SLEDISLPVNQLSGAISNGVVNLTSLN 173
+ + LSG+ S+ ++ + L N S S
Sbjct: 82 VTSL-----NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS---SKSSSEFKQAF 133
Query: 174 IGKLANLKSLKLHTNSLSG----FLPQFLMNC-TNLITLNLRINNFRGDLSAYNFSTL-- 226
A++ SL L N L L Q L N+ +LNLR NN + +
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAKFLA 192
Query: 227 ---HNLHTIDLGNNNFTGSFPLTLTSCM-----FLTAIRLSGNKIE----EQISPTILAL 274
++ ++DL N L + ++ L N + E + +L
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
Query: 275 VSVSYLSINNNNLSNIT--GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQ- 331
+ + ++ + + N++ + N++ ++L E I + I IS+ +
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSIPISN-LIRE 310
Query: 332 ---NLVVLGIGNCEIK-----GQIPTWLGKLKKLQVLDLGSNQI 367
V + N + L +L+ +
Sbjct: 311 LSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 54/298 (18%), Positives = 97/298 (32%), Gaps = 59/298 (19%)
Query: 147 SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS----GFLPQFLM-NC 201
+ + L +N L S V L A++ SL L NSL L Q L
Sbjct: 23 GVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79
Query: 202 TNLITLNLRINNFRGDLSAYNFSTL-----HNLHTIDLGNNNFTGSFPLTLTSCMF---- 252
N+ +LNL N S+ + +DLG N+F+
Sbjct: 80 ANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 253 -LTAIRLSGNKIEEQ----ISPTILAL-VSVSYLSINNNNLSNITGAIGILMG----CKN 302
+T++ L GN + + + + A+ +V+ L++ NNL++ + +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPAS 197
Query: 303 LRMLLLCKIFFHEAIPDENQITISSYAF---------QNLVVLGIGNCEIKGQ----IPT 349
+ L L N + + SYA ++V L + + G +
Sbjct: 198 VTSLDLS----------ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 350 WLGKLKKLQVLDLGSNQITGPIPG-------WLGNMPNLFYIDLSYNSISGEFPKEFC 400
LK LQ + L + + N+ + +D + I
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.75 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.69 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.64 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.62 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.6 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.59 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.56 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.55 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.55 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.47 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.43 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.39 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.38 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.36 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.34 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.16 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.16 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.15 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.1 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.01 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.8 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.78 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.74 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.39 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.35 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.05 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.98 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.72 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.65 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.22 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.15 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.35 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.3 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-55 Score=460.01 Aligned_cols=466 Identities=25% Similarity=0.344 Sum_probs=345.2
Q ss_pred ccccccccChhhHHHHHHhHhcCCCCC--CCCCCCCCCccceeEEeCCCCCEEEEECCCCCcccc---ccc---------
Q 047549 5 FASLDQACNQIDQETLLSLNFNASNPP--LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGS---IYP--------- 70 (479)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~---~~~--------- 70 (479)
+++++++..++|++||++||+++.++. ..|..++|||.|.||+|+ .++|+.|+|+++.+.|. +++
T Consensus 2 ~~~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 2 FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp ------CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CcCccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 355666678889999999999998663 789888999999999998 78999999999998886 554
Q ss_pred --------------cccCCCCCCeeecCCCcCCCcCCC------CCCCCEEEcCCcccccCCCCCCcC-CCCCCCcEEEc
Q 047549 71 --------------FTGKLTHLCHLNLSHNHLSFLSPS------VPFLSILDFSHNYFRGHCQLPSGL-GNFSKLQTFRA 129 (479)
Q Consensus 71 --------------~l~~l~~L~~L~L~~n~l~~~~~~------~~~L~~L~L~~n~l~~~~~l~~~~-~~l~~L~~L~l 129 (479)
.++.+++|++|+|++|.+.+..+. .++|++|++++|.+.+ .+|..+ .++++|++|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF--PGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC--CSSCCSCCCCTTCSEEEC
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC--cCCHHHhccCCCCCEEEC
Confidence 556667777777777766654332 2667777777777664 444443 56777777777
Q ss_pred cccccccCCCcc---CCCCCCCCEEECCCCcccccCCc-cccccCCC------------CCCCCCCCCEEEccCCcCccc
Q 047549 130 GFSYLSGSIPDD---VSAAASLEDISLPVNQLSGAISN-GVVNLTSL------------NIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 130 ~~n~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l------------~~~~~~~L~~L~L~~n~l~~~ 193 (479)
++|.+++..+.. +.++++|++|++++|.+.+..+. .+.+++.+ .+..+++|++|++++|.+++.
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc
Confidence 777776655554 55666666666666666544332 11111111 256678888888888888888
Q ss_pred cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCC-CCCCEEEccCCcccccChhhhh
Q 047549 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC-MFLTAIRLSGNKIEEQISPTIL 272 (479)
Q Consensus 194 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~ 272 (479)
.|..+..+++|++|++++|.+.+.++.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++..|..+.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 8888888888888888888887665542 67788888888888877777777664 7888888888888877888888
Q ss_pred ccCCCCEEEccCCCCC-CCCCccccccCCCCCcEEEccCccccccCCCCcccc---------------------cccccc
Q 047549 273 ALVSVSYLSINNNNLS-NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT---------------------ISSYAF 330 (479)
Q Consensus 273 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------~~~~~~ 330 (479)
.+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+.+|...... +....+
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~--~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPM--DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCH--HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred cCCCccEEECCCCcccCcCCH--HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 8888888888888776 3332 235667777777777777776665543210 000115
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~ 410 (479)
++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|+.+++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 67888888888888888888888999999999999998888888888999999999999998888988999999999988
Q ss_pred ccccCCCCcccCcccccccccccccccccccC-CCC---------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 411 KNRADGNQLQLPLFVPETKCALYNQQYNKLFS-LPP---------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~-~~~---------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++|...+..+ ..+...++|+.+++++|+++. +|. .|++++|+++|.+|..+.++++|+.|++++|+++
T Consensus 474 ~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 474 DFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCcccCcCC-HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 8776553332 335567888899999998874 342 5899999999999999999999999999999763
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=419.93 Aligned_cols=449 Identities=18% Similarity=0.215 Sum_probs=333.8
Q ss_pred ccccChhhHHHHHHhHhcCCCCC-----------CCCCCCCCCccc---eeEEeCCCCCEEEEECCCCCccccccccccC
Q 047549 9 DQACNQIDQETLLSLNFNASNPP-----------LNWSFSTDCCLW---EGIKCDSEAQVTHLWLPDRGLRGSIYPFTGK 74 (479)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~-----------~~w~~~~~~c~w---~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~ 74 (479)
..|....|+.||.+++.++.++. .+|..+.++|.| .||+|+..++|+.|+|+++++.|.+|+++++
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhc
Confidence 34455678999999999976553 379989999999 9999998899999999999999999999999
Q ss_pred CCCCCeeecCCCcCC------Cc---------------------------CC-----------------------CCCCC
Q 047549 75 LTHLCHLNLSHNHLS------FL---------------------------SP-----------------------SVPFL 98 (479)
Q Consensus 75 l~~L~~L~L~~n~l~------~~---------------------------~~-----------------------~~~~L 98 (479)
+++|++|+|++|.+. +. ++ ....+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 999999999999651 10 00 00112
Q ss_pred CEEEcC--CcccccCCCCCCcCCCCCCCcEEEccccccccC-----------------CCccCC--CCCCCCEEECCCCc
Q 047549 99 SILDFS--HNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGS-----------------IPDDVS--AAASLEDISLPVNQ 157 (479)
Q Consensus 99 ~~L~L~--~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~ 157 (479)
+.+.+. +|.++ .+|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.
T Consensus 184 ~~l~l~~~~n~l~---~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 184 KDTQIGQLSNNIT---FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CTTTTTCCSCEEE---EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred hhhhhccccCCCc---cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 222221 45666 3788888888888888888888864 888888 88888888888888
Q ss_pred ccccCCccccccCCCCCCCCCCCCEEEccCCc-Ccc-ccchhhhcC------CCCCeeeccCCcCccccCc-cccCCCCC
Q 047549 158 LSGAISNGVVNLTSLNIGKLANLKSLKLHTNS-LSG-FLPQFLMNC------TNLITLNLRINNFRGDLSA-YNFSTLHN 228 (479)
Q Consensus 158 l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~-~~~~~l~~ 228 (479)
+.+.+|.. +.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. ..+..+++
T Consensus 261 l~~~~p~~--------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 261 NLTKLPTF--------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp TCSSCCTT--------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred CCccChHH--------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence 88877765 4567888888888887 887 678777765 88888888888887 6664 25778888
Q ss_pred CcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCC-CCEEEccCCCCCCCCCccccccCCCCCcEEE
Q 047549 229 LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS-VSYLSINNNNLSNITGAIGILMGCKNLRMLL 307 (479)
Q Consensus 229 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~ 307 (479)
|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++.+|..+ ....+++|+.|+
T Consensus 332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~L~~L~ 408 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSVMSAID 408 (636)
T ss_dssp CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSCEEEEE
T ss_pred CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCccCEEE
Confidence 8888888888887888 7888888888888888887 46677888888 888888888888666422 112244788888
Q ss_pred ccCccccccCCCCcc-ccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCc-ccCCC-------
Q 047549 308 LCKIFFHEAIPDENQ-ITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPG-WLGNM------- 378 (479)
Q Consensus 308 l~~n~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l------- 378 (479)
+++|.+.+..|..+. .......+++|++|++++|+++...+..+..+++|++|++++|++. .+|. .+...
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNT 487 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccccc
Confidence 888888877665443 1111113457888888888888444445566888888888888888 4443 33322
Q ss_pred CCCcEEEccCCcccccCCcccc--CCccccccccccccCCCCcccCccccccccccccccc------ccccC-CC-----
Q 047549 379 PNLFYIDLSYNSISGEFPKEFC--GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY------NKLFS-LP----- 444 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------n~l~~-~~----- 444 (479)
++|++|++++|+++ .+|..+. .++.|+.+++++|..... + ..+....+|+.+++++ |++.. +|
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~i-p-~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF-P-TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSC-C-CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCc-C-hhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 27888888888888 6777776 888888888877665542 1 2344567778888744 44432 23
Q ss_pred ----CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ----PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ----~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++ +.+|..+. ++|+.||+++|+++
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 2689999999 48888766 78999999999864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=409.40 Aligned_cols=445 Identities=19% Similarity=0.216 Sum_probs=339.9
Q ss_pred cccccChhhHHHHHHhHhcCCCCCCCCCCCC-----CC--ccc------------eeEEeCCCCCEEEEECCCCCccccc
Q 047549 8 LDQACNQIDQETLLSLNFNASNPPLNWSFST-----DC--CLW------------EGIKCDSEAQVTHLWLPDRGLRGSI 68 (479)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~w~~~~-----~~--c~w------------~~v~c~~~~~l~~L~l~~~~l~~~~ 68 (479)
.++|...+|+.||++||.++.++ +|..+. ++ |.| .||.|+..++|+.|+|+++++.|.+
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred cccccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 34456678999999999999765 887543 55 999 9999998899999999999999999
Q ss_pred cccccCCCCCCeeec-CCCcCCCcCCC-----------------------------------------------------
Q 047549 69 YPFTGKLTHLCHLNL-SHNHLSFLSPS----------------------------------------------------- 94 (479)
Q Consensus 69 ~~~l~~l~~L~~L~L-~~n~l~~~~~~----------------------------------------------------- 94 (479)
|++++++++|++|+| ++|.+.+..+.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 88866544110
Q ss_pred --CCCCCEEEcCC--cccccCCCCCCcCCCCCCCcEEEcccccccc-----------------CCCccCC--CCCCCCEE
Q 047549 95 --VPFLSILDFSH--NYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG-----------------SIPDDVS--AAASLEDI 151 (479)
Q Consensus 95 --~~~L~~L~L~~--n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L 151 (479)
...++.+.+.. |.++ .+|..++++++|++|++++|.+++ .+|..++ ++++|++|
T Consensus 420 ~~~l~l~~l~l~~~~N~L~---~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRIT---FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEE---EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccchhhceeccccCccc---chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 01223333332 5666 378888899999999999999887 3888877 89999999
Q ss_pred ECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCc-Ccc-ccchhhhcCC-------CCCeeeccCCcCccccCc-c
Q 047549 152 SLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS-LSG-FLPQFLMNCT-------NLITLNLRINNFRGDLSA-Y 221 (479)
Q Consensus 152 ~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~-~ 221 (479)
++++|.+.+.+|.. +.++++|++|++++|. +++ .+|..+..++ +|+.|++++|.+. .+|. .
T Consensus 497 ~Ls~N~l~~~iP~~--------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 497 ELYNCPNMTQLPDF--------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp EEESCTTCCSCCGG--------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred ECcCCCCCccChHH--------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 99999888888865 4557889999999997 887 6787776665 8999999999988 7774 3
Q ss_pred ccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCC-CCEEEccCCCCCCCCCccccccCC
Q 047549 222 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS-VSYLSINNNNLSNITGAIGILMGC 300 (479)
Q Consensus 222 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~l~~~ 300 (479)
.+..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+. ....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~-~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-AKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC-TTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhh-cccc
Confidence 6788899999999999988 777 7888889999999999988 57777888888 9999999998887664221 1223
Q ss_pred CCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch-hhcCCCCCCEEeCCCCccccccCcccCC--
Q 047549 301 KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT-WLGKLKKLQVLDLGSNQITGPIPGWLGN-- 377 (479)
Q Consensus 301 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 377 (479)
++|+.|++++|.+.+.+|.... .......++|+.|++++|+++ .+|. .+..+++|+.|+|++|++. .+|..+..
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~-~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISC-SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSS-CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred CCCCEEECcCCcCCCccccchh-hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 4589999999988876653221 111113357889999999888 4554 4457888999999999888 44543322
Q ss_pred ------CCCCcEEEccCCcccccCCcccc--CCccccccccccccCCCCcccCccccccccccccccc------ccccC-
Q 047549 378 ------MPNLFYIDLSYNSISGEFPKEFC--GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY------NKLFS- 442 (479)
Q Consensus 378 ------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------n~l~~- 442 (479)
+++|++|+|++|+++ .+|..+. .+++|+.+++++|..... ...+....+|+.+++++ |++..
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~l--p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF--PTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCcc--chhhhcCCCCCEEECCCCCCccccccccc
Confidence 238899999999888 7787776 888899888887765542 12344677788888866 44442
Q ss_pred CC---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 443 LP---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 443 ~~---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+| ..|++++|++ +.+|..+. ++|+.|||++|+++
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 23 2689999999 58888876 58999999999874
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=409.25 Aligned_cols=331 Identities=30% Similarity=0.450 Sum_probs=232.3
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC--CCCCEEEcCCcccccCCCCCCcCCCC-CCCcEEEc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV--PFLSILDFSHNYFRGHCQLPSGLGNF-SKLQTFRA 129 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~L~~L~L~~n~l~~~~~l~~~~~~l-~~L~~L~l 129 (479)
++++|++++|.+++.+|..+..+++|++|++++|.+.+..+.. ++|++|++++|.+++ .+|..+... ++|++|++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~--~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEE--SCCCCSCTTCTTCSEEEC
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCC--ccCHHHHhhcCcCCEEEC
Confidence 3444444444444444444444444444444444444333222 455555555555544 455544432 55566666
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC-CCCeee
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT-NLITLN 208 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~ 208 (479)
++|.+.+.+|..+..+++|++|++++|.+.+.+|... +..+++|++|++++|.+++.+|..+..++ +|+.|+
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~-------l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-------LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH-------HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH-------HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 6655555555555555666666666655554444321 45677788888888888777777777776 788888
Q ss_pred ccCCcCccccCccccCC--CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 209 LRINNFRGDLSAYNFST--LHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
+++|.+.+.++. .+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 375 Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 375 LSSNNFSGPILP-NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp CCSSEEEEECCT-TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCCCcCCCcCh-hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 888887766654 3333 6788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 287 l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
+++..+ ..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|++++.+|.+++.+++|++|++++|+
T Consensus 454 l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~l~------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 454 LEGEIP--QELMYVKTLETLILDFNDLTGEIPSGLS------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccCcCC--HHHcCCCCceEEEecCCcccCcCCHHHh------cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 874322 4567788888888888888887776544 67888899999888888888888888889999999998
Q ss_pred cccccCcccCCCCCCcEEEccCCcccccCCccccC
Q 047549 367 ITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
+.+.+|..+..+++|++|++++|++++.+|..+..
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88888888888888999999888888777765543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=371.61 Aligned_cols=408 Identities=19% Similarity=0.154 Sum_probs=297.5
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.++++|++++|.+++..|..+.++++|++|++++|++++..+.. ++|++|++++|.+++ ..|..++.+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF--MAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE--ECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc--cChhhhcccccccEe
Confidence 47999999999999988999999999999999999998876543 899999999999985 567789999999999
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC--
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI-- 205 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~-- 205 (479)
++++|.+++..+..+.++++|++|++++|.+.+..... +..+++|++|++++|.+++..+..+..+++|+
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--------GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--------TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCccc--------ccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 99999999666778999999999999999988743332 23367777777777777766666677777766
Q ss_pred eeeccCCcCcc---------------------------------------------------------------------
Q 047549 206 TLNLRINNFRG--------------------------------------------------------------------- 216 (479)
Q Consensus 206 ~L~l~~n~l~~--------------------------------------------------------------------- 216 (479)
.|++++|.+.+
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 66666665542
Q ss_pred -----ccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC-CC
Q 047549 217 -----DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS-NI 290 (479)
Q Consensus 217 -----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 290 (479)
.++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 122223566777888888888777 66777777888888888888887776777777888888888887765 22
Q ss_pred CCccccccCCCCCcEEEccCccccccC--CCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 291 TGAIGILMGCKNLRMLLLCKIFFHEAI--PDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 291 ~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
+. ..+..+++|+.|++++|.+.+.. +..+ ..+++|++|++++|++.+..|..+..+++|++|++++|++.
T Consensus 342 ~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 342 GT--GCLENLENLRELDLSHDDIETSDCCNLQL------RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CS--STTTTCTTCCEEECCSSCCCEEEESTTTT------TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred ch--hhhhccCcCCEEECCCCccccccCcchhc------ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 22 34667778888888877776543 2222 25677888888888877777777777788888888888777
Q ss_pred cccCc-ccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCC--cccCcccccccccccccccccccCCC-
Q 047549 369 GPIPG-WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQ--LQLPLFVPETKCALYNQQYNKLFSLP- 444 (479)
Q Consensus 369 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~n~l~~~~- 444 (479)
+..+. .+..+++|++|++++|.+++..|..+.++++|+.+++++|..... .....+....+|+.+++++|+++.++
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 55443 477777788888888877777777777777777777776644321 11133455566667777766665442
Q ss_pred ---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++++..|..+.+++.| .|++++|+++
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 146666666666666666666666 6666666653
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=363.13 Aligned_cols=177 Identities=18% Similarity=0.138 Sum_probs=99.8
Q ss_pred cCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc--cccCccc
Q 047549 298 MGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT--GPIPGWL 375 (479)
Q Consensus 298 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~ 375 (479)
..+++|+.|++++|.+.+.++.... ..+++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..+
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEW-----RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGG-----TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred hCCCCCCEEeCCCCcCccccCcccc-----cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 3444444444444444433332111 13445555555555555444444445555555555555443 3455666
Q ss_pred CCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCc-------ccCcccccccccccccccccccCCCC---
Q 047549 376 GNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQL-------QLPLFVPETKCALYNQQYNKLFSLPP--- 445 (479)
Q Consensus 376 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~n~l~~~~~--- 445 (479)
..+++|++|++++|++++..|..|.++++|+.+++++|...... ....+.....|+.+++++|+++.+|.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 67777777777777777666666777777777777665433221 11124455666677777776665543
Q ss_pred -------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 446 -------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 446 -------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|++++|++++..+..|.++++|+.|++++|+++
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 3677777777444445566667777777776654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=365.99 Aligned_cols=418 Identities=16% Similarity=0.121 Sum_probs=328.8
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++|++++|.+++..|..+..+++|++|++++|++++..+.. ++|++|++++|.+++ ..+..++++++|++
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLES 133 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC--GGGSCCTTCTTCCE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc--CCcchhccCCcccE
Confidence 457888888888888777788888888888888888887765432 778888888887763 22455677777777
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCC-----C-----------------------C---
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-----I-----------------------G--- 175 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-----~-----------------------~--- 175 (479)
|++++|.+.+.....+..+++|++|++++|.+++..+..+..+..+. + .
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 77777777753333344477777777777766655444333322210 0 0
Q ss_pred ------------------------------------CC--CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccc
Q 047549 176 ------------------------------------KL--ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGD 217 (479)
Q Consensus 176 ------------------------------------~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 217 (479)
.+ .+|++|++++|.+++..+..+..+++|++|++++|.+. .
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence 00 15778888888888777778999999999999999998 7
Q ss_pred cCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccCh-hhhhccCCCCEEEccCCCCCCCCCcccc
Q 047549 218 LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS-PTILALVSVSYLSINNNNLSNITGAIGI 296 (479)
Q Consensus 218 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (479)
+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++........
T Consensus 293 lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 293 LPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 775 68889999999999999997778889999999999999999885554 4588999999999999999866433356
Q ss_pred ccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc-hhhcCCCCCCEEeCCCCccccccCccc
Q 047549 297 LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPGWL 375 (479)
Q Consensus 297 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 375 (479)
+..+++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFK------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTT------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhc------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 78899999999999998877666544 67899999999999987655 448899999999999999998888889
Q ss_pred CCCCCCcEEEccCCccccc---CCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC-------
Q 047549 376 GNMPNLFYIDLSYNSISGE---FPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP------- 445 (479)
Q Consensus 376 ~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~------- 445 (479)
..+++|++|++++|++++. .+..+..+++|+.+++++|...... ...+....+|+.+++++|+++..+.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC-hhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 9999999999999999863 3467889999999999887554332 2445667889999999998875422
Q ss_pred --eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 446 --AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 446 --~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 525 ~L~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 525 GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCEEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ccEEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 6899999999888889999999999999999873
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=359.67 Aligned_cols=405 Identities=15% Similarity=0.140 Sum_probs=241.2
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++|++++|++++..+..+.++++|++|++++|.+++..+.. ++|++|++++|.+++ ..|..++++++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS--FSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC--CCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc--cChhhcCCcccCCE
Confidence 357999999999999888889999999999999999999886543 899999999999985 45788999999999
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCcccc-cCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG-AISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
|++++|.+.+..+..++++++|++|++++|.+.+ .+|.. +.++++|++|++++|.+++..+..+..+++|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY--------FSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG--------GGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHh--------HhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 9999999987666789999999999999999886 44665 45678888889988888877676666655544
Q ss_pred ----eeeccCCcCccccCccccCCCCCCcEEEccCC--------------------------------------------
Q 047549 206 ----TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-------------------------------------------- 237 (479)
Q Consensus 206 ----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------------------------------------------- 237 (479)
.+++++|.+. .++...+... +|++|++++|
T Consensus 181 ~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 181 QVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 5777777665 3333233222 4555555444
Q ss_pred -------------------------------------cccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 238 -------------------------------------NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 238 -------------------------------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
.+. .+| .+..+++|++|++++|.+. .+|. + .+++|+.|
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L 333 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSL 333 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C-CCCcccee
Confidence 433 233 4445556666666666552 2332 2 44444444
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccC--CCCcc-----------------ccccccccCCccEEEeeCC
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI--PDENQ-----------------ITISSYAFQNLVVLGIGNC 341 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~--~~~~~-----------------~~~~~~~~~~L~~L~l~~n 341 (479)
++++|..... ..+..+++|+.|++++|.+.+.. +.... .......+++|++|++++|
T Consensus 334 ~l~~n~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 334 TLTMNKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409 (606)
T ss_dssp EEESCSSCEE----CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS
T ss_pred eccCCcCccc----hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC
Confidence 4444422110 12334455555555555544321 11100 0000013344555555555
Q ss_pred cceecCc-hhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc-cCCccccCCccccccccccccCCCCc
Q 047549 342 EIKGQIP-TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG-EFPKEFCGLPALALQEAKNRADGNQL 419 (479)
Q Consensus 342 ~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~ 419 (479)
++.+..+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++ ..|..|.++++|+.+++++|......
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 5444333 344455555555555555554444555555555555555555554 24555555555555555544322211
Q ss_pred ccCcccccccccccccccccccCC-C---------CeEEccCCcccccCChhhhccc-ccCeeeCCCCCC
Q 047549 420 QLPLFVPETKCALYNQQYNKLFSL-P---------PAIYLRNNGLNGSIPIEIGNVM-FLHVLDLSLNNF 478 (479)
Q Consensus 420 ~~~~~~~~~~l~~~~l~~n~l~~~-~---------~~l~ls~n~l~~~~~~~~~~~~-~L~~L~ls~N~l 478 (479)
...+....+|+.+++++|+++.+ | ..|++++|+++ .+|..+..++ +|+.|++++|++
T Consensus 490 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 490 -WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp -TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred -hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 12233444555555555555433 1 13555555555 4444455554 355555555554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=355.27 Aligned_cols=415 Identities=17% Similarity=0.169 Sum_probs=296.6
Q ss_pred CccceeEEeCC------------CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEc
Q 047549 40 CCLWEGIKCDS------------EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDF 103 (479)
Q Consensus 40 ~c~w~~v~c~~------------~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L 103 (479)
.|.|.++ |+. .+++++|++++|++++..|..+..+++|++|++++|++++.++.. ++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4778776 642 247999999999999988899999999999999999999887543 89999999
Q ss_pred CCcccccCCCCCCcCCCCCCCcEEEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCE
Q 047549 104 SHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKS 182 (479)
Q Consensus 104 ~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~ 182 (479)
++|.+++ ..|..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.++.. .+.++++|++
T Consensus 82 s~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-------~~~~l~~L~~ 152 (549)
T 2z81_A 82 SDNHLSS--LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-------DFAGLTSLNE 152 (549)
T ss_dssp TTSCCCS--CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-------TTTTCCEEEE
T ss_pred CCCccCc--cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh-------hhhcccccCe
Confidence 9999984 333458999999999999999985 35678899999999999999844444321 2567888999
Q ss_pred EEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccC--Cc-cCcCCCCCCEEEcc
Q 047549 183 LKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF--PL-TLTSCMFLTAIRLS 259 (479)
Q Consensus 183 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~-~~~~~~~L~~L~l~ 259 (479)
|++++|.+++..|..+..+++|+.|+++.|.+. .++...+..+++|++|++++|.+++.. |. ....+++|+.|+++
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 999999998888888888888888888888765 444434456778888888888776531 11 12234555555555
Q ss_pred CCcccccChhh---------------------------------------------------------------hhccCC
Q 047549 260 GNKIEEQISPT---------------------------------------------------------------ILALVS 276 (479)
Q Consensus 260 ~n~l~~~~~~~---------------------------------------------------------------~~~l~~ 276 (479)
+|.+++..+.. +....+
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 55544322211 112234
Q ss_pred CCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc--hhhcCC
Q 047549 277 VSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP--TWLGKL 354 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~l 354 (479)
|+.|++++|.+..+|. ..+..+++|+.|++++|.+.+.++.... ....+++|++|++++|++++..+ ..+..+
T Consensus 312 L~~L~l~~n~l~~ip~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 312 VKRITVENSKVFLVPC--SFSQHLKSLEFLDLSENLMVEEYLKNSA---CKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp CCEEEEESSCCCCCCH--HHHHHCTTCCEEECCSSCCCHHHHHHHT---CTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred ceEEEeccCccccCCH--HHHhcCccccEEEccCCccccccccchh---hhhccccCcEEEccCCcccccccchhhhhcC
Confidence 5555555555554432 1123567777777777777654321100 01245677888888877764322 456777
Q ss_pred CCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccc
Q 047549 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYN 434 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (479)
++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+. +.|+.+++++|...... ....+|+.++
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~ 457 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS-----LFLPRLQELY 457 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc-----ccCChhcEEE
Confidence 78888888888777 56667777777888888888776 3343332 46777777766443321 3567888999
Q ss_pred cccccccCCCC--------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 435 QQYNKLFSLPP--------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 435 l~~n~l~~~~~--------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+++|+++.+|. .|++++|++++..|..+..+++|+.|++++|+++
T Consensus 458 Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 458 ISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 99999998874 5999999999888888999999999999999874
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=353.42 Aligned_cols=417 Identities=22% Similarity=0.227 Sum_probs=286.4
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.++++|++++|.+++..|..++++++|++|++++|.++++++. .++|++|++++|.+.+ ..|..++++++|++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITL 126 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSCTTTTCTTCCEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc--cChhHccccCCCCEE
Confidence 3566666666666665566666666666666666666655442 1566666666666552 222345556666666
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccc--------------------------cCCccccccCC----------
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG--------------------------AISNGVVNLTS---------- 171 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~~~~~~~l~~---------- 171 (479)
++++|.+.+..+..+.++++|++|++++|.+++ ..+..+..+..
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 666666555555555555555555555554443 22222211110
Q ss_pred --------------------C-------------CCCCC--CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc
Q 047549 172 --------------------L-------------NIGKL--ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG 216 (479)
Q Consensus 172 --------------------l-------------~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (479)
+ .+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 0 11122 236677777776666666666667777777777766543
Q ss_pred ccCc--------------------------------cccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccC----
Q 047549 217 DLSA--------------------------------YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG---- 260 (479)
Q Consensus 217 ~~~~--------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~---- 260 (479)
..+. ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 2211 1344556677777777777665555566555555555544
Q ss_pred ------------------------CcccccChhhhhccCCCCEEEccCCCCCC-CCCccccccCCCCCcEEEccCccccc
Q 047549 261 ------------------------NKIEEQISPTILALVSVSYLSINNNNLSN-ITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 261 ------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
|.+++..+..+..+++|+.|++++|.++. ++. ..+..+++|+.|++++|.+.+
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG--QEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS--GGGTTCTTCCEEECCSCSEEE
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc--ccccCcccccEEecCCCCcce
Confidence 44555556667777888888888887753 222 457789999999999999887
Q ss_pred cCCCCccccccccccCCccEEEeeCCcce--ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIK--GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
..+..+. .+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++
T Consensus 445 ~~~~~~~------~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 445 LTRNSFA------LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CCTTTTT------TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred eChhhhh------cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 6665544 6789999999999986 4578889999999999999999998788889999999999999999986
Q ss_pred cCC--------ccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC----------eEEccCCccc
Q 047549 394 EFP--------KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP----------AIYLRNNGLN 455 (479)
Q Consensus 394 ~~p--------~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~----------~l~ls~n~l~ 455 (479)
..+ ..|.+++.|+.+++++|... .++...+....+|+.+++++|+++.+|. .|++++|+++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 532 23788999999999887654 3333457788899999999999998764 5999999999
Q ss_pred ccCChhhh-cccccCeeeCCCCCCC
Q 047549 456 GSIPIEIG-NVMFLHVLDLSLNNFS 479 (479)
Q Consensus 456 ~~~~~~~~-~~~~L~~L~ls~N~l~ 479 (479)
+..|..+. .+++|+.|++++|++.
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred ccChhHhcccccccCEEEccCCCcc
Confidence 87777787 7999999999999874
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=345.93 Aligned_cols=392 Identities=18% Similarity=0.132 Sum_probs=303.4
Q ss_pred CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCc
Q 047549 50 SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQ 125 (479)
Q Consensus 50 ~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~ 125 (479)
...++++|++++|.+++..|..+.++++|++|++++|.+++..|.. ++|++|++++|.+++ ..+..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC--SSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc--ccccccCCCCCCC
Confidence 4568999999999999888889999999999999999999885543 899999999999984 2336789999999
Q ss_pred EEEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCC-------------------CCCCCCCCEEEc
Q 047549 126 TFRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLN-------------------IGKLANLKSLKL 185 (479)
Q Consensus 126 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~-------------------~~~~~~L~~L~L 185 (479)
+|++++|.+.+ .+|..+.++++|++|++++|.+++..+..+..+..+. .....+|++|++
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 99999999975 5788999999999999999998877666554332110 011124555555
Q ss_pred cCCcCc----------------------------------------------------------c---------------
Q 047549 186 HTNSLS----------------------------------------------------------G--------------- 192 (479)
Q Consensus 186 ~~n~l~----------------------------------------------------------~--------------- 192 (479)
++|.++ +
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence 554432 0
Q ss_pred -------ccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc
Q 047549 193 -------FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265 (479)
Q Consensus 193 -------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (479)
.++ .+..+++|++|++++|.+ +.++. + .+++|++|++++|...+.. .+..+++|++|++++|.+++
T Consensus 292 l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccchhhh-hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 112 334445555555555555 34552 2 5666666666666443332 45677888889999888877
Q ss_pred cC--hhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 266 QI--SPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 266 ~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.. +..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+.... ..+++|++|++++|++
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAF-----LSLEKLLYLDISYTNT 436 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTT-----TTCTTCCEEECTTSCC
T ss_pred CcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChhhh-----hccccCCEEECcCCCC
Confidence 63 778889999999999999988665 5677889999999999999887662221 2678999999999999
Q ss_pred eecCchhhcCCCCCCEEeCCCCcccc-ccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccC
Q 047549 344 KGQIPTWLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLP 422 (479)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 422 (479)
++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..|.+++.|+.+++++|...... ..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~ 515 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SS 515 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HH
Confidence 98889999999999999999999997 47889999999999999999999999999999999999999987654432 24
Q ss_pred cccccccccccccccccccCCCC----------eEEccCCcccccCC
Q 047549 423 LFVPETKCALYNQQYNKLFSLPP----------AIYLRNNGLNGSIP 459 (479)
Q Consensus 423 ~~~~~~~l~~~~l~~n~l~~~~~----------~l~ls~n~l~~~~~ 459 (479)
.+....+|+.+++++|+++++|. .+++++|.+....+
T Consensus 516 ~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred HccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 45667889999999999986653 58999999985433
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=362.06 Aligned_cols=412 Identities=19% Similarity=0.187 Sum_probs=267.2
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcC-C----CCCCCCEEEcCCcccccCCCCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLS-P----SVPFLSILDFSHNYFRGHCQLP 115 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~----~~~~L~~L~L~~n~l~~~~~l~ 115 (479)
|.|..|.+ -.+++++|+|++|.+++..+..+..+++|++|++++|...+.. + ..++|++|++++|.+.+ ..|
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--LHP 90 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--ECT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc--cCH
Confidence 45666666 5678999999999999988999999999999999999554332 3 23899999999999985 568
Q ss_pred CcCCCCCCCcEEEccccccccCCCcc--CCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 116 SGLGNFSKLQTFRAGFSYLSGSIPDD--VSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 116 ~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
..++++++|++|++++|.+.+.++.. +.++++|++|++++|.+++..+... +.++++|++|++++|.+++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-------~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-------FGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG-------GGTCSSCCEEEEESSCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchh-------HhhCCCCCEEECCCCcCCee
Confidence 89999999999999999998766655 8899999999999999887654321 56678888888888888777
Q ss_pred cchhhhcC--CCCCeeeccCCcCccccCccccCCC---------------------------------------------
Q 047549 194 LPQFLMNC--TNLITLNLRINNFRGDLSAYNFSTL--------------------------------------------- 226 (479)
Q Consensus 194 ~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~l--------------------------------------------- 226 (479)
.+..+..+ ++|+.|+++.|.+.+..+. .+..+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 66666655 5666666666655533322 22222
Q ss_pred -----------------------CCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEcc
Q 047549 227 -----------------------HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSIN 283 (479)
Q Consensus 227 -----------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (479)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 345555555555554444455555555555555555555555555555555555555
Q ss_pred CCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCC
Q 047549 284 NNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLG 363 (479)
Q Consensus 284 ~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 363 (479)
+|.++.+.. ..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+++ ++ .+++|+.|+++
T Consensus 323 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~------~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 323 YNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQTFK------FLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS 389 (844)
T ss_dssp SCCCSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSCSC------SCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred CCCCCccCH--HHhcCCCCCCEEECCCCCCCccChhhhc------CCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence 555543322 2344555555555555555433332221 34555555555555542 11 13334444444
Q ss_pred CCccccccC----------------------cccCCCCCCcEEEccCCcccccCCc-cccCCccccccccccccCCCCc-
Q 047549 364 SNQITGPIP----------------------GWLGNMPNLFYIDLSYNSISGEFPK-EFCGLPALALQEAKNRADGNQL- 419 (479)
Q Consensus 364 ~n~l~~~~~----------------------~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~- 419 (479)
+|++.. +| ..+..+++|++|++++|++++..+. .+..+++|+.+++++|......
T Consensus 390 ~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 390 GNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp SCCCCC-CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred CCCccc-ccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 433331 11 1133567777777777777754433 3556777777777766543211
Q ss_pred ---ccCcccccccccccccccccccCCCC----------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 420 ---QLPLFVPETKCALYNQQYNKLFSLPP----------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 420 ---~~~~~~~~~~l~~~~l~~n~l~~~~~----------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
....+...++|+.+++++|+++++|. .|++++|++++..|..+. ++|+.|++++|+|+
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 11335566778888888888877653 488888888865555555 78888888888874
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=345.25 Aligned_cols=410 Identities=17% Similarity=0.158 Sum_probs=295.9
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
..++++|++++|++++..+..+.++++|++|++++|++++.++.. ++|++|++++|.+++ ..|..+..+++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc--cCHhhhcCcccccc
Confidence 347899999999999888889999999999999999998876543 899999999999884 34568899999999
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC-
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL- 204 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L- 204 (479)
|++++|.+++..+..++++++|++|++++|.+.+. +|.. +.++++|++|++++|.+++..+..+..+++|
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG--------GGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhh--------hcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 99999999865555789999999999999988863 4655 4567899999999999988777778877777
Q ss_pred ---CeeeccCCcCccccCccccCCCCCCcEEEccCC--------------------------------------------
Q 047549 205 ---ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-------------------------------------------- 237 (479)
Q Consensus 205 ---~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------------------------------------------- 237 (479)
+.+++++|.+.+ ++...+... +|++|++++|
T Consensus 177 ~~~~~L~l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 177 LLNLSLDLSLNPMNF-IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred hhhhhcccCCCCcee-cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 788888887763 322233322 4555544443
Q ss_pred --------------cccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCcc---------
Q 047549 238 --------------NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI--------- 294 (479)
Q Consensus 238 --------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------- 294 (479)
.+.+..|..+..+++|+.|++++|.+.+ +|..+..+ +|+.|++++|.+..++...
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l 332 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTF 332 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeC
Confidence 2222334444555566666666665553 34444444 5555555555555333210
Q ss_pred --------ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 295 --------GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 295 --------~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
.....+++|+.|++++|.+.+.... ......+++|++|++++|++.+..+. +..+++|++|++++|.
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC----SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE----EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred cCCccccccccccCCCCCEEeCcCCccCccccc----cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 0014556677777766665543200 00112567888888888888754444 8888888888888888
Q ss_pred cccccC-cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCC-C
Q 047549 367 ITGPIP-GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSL-P 444 (479)
Q Consensus 367 l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~-~ 444 (479)
+.+..+ ..+..+++|++|++++|.+++..|..|.+++.|+.+++++|......-...+....+|+.+++++|+++.+ |
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 886655 56788889999999999998888888889999999988876533111113455677888999999888765 2
Q ss_pred ---------CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ---------PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ---------~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++++..|..+.++++|+.|++++|+++
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 26899999999888888999999999999999874
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=324.22 Aligned_cols=350 Identities=19% Similarity=0.209 Sum_probs=230.5
Q ss_pred CCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCC-CCcCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 76 THLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQL-PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
++|++|++++|.+++..+. +++|++|++++|.+.+ .+ +..+..+++|++|++++|.+.+..|..+.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL--VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC--EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccc--eECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 4566666666666555332 2566666666665542 23 345777777888888887777666777777788888
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh-hhcCCCCCeeeccCCcCccccCccccCCC--C
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF-LMNCTNLITLNLRINNFRGDLSAYNFSTL--H 227 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~ 227 (479)
|++++|.+++..+..- .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+ ..+..+ .
T Consensus 108 L~L~~n~l~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~ 180 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGN------FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE-EDLLNFQGK 180 (455)
T ss_dssp EECTTSCCBTHHHHSS------TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-TTSGGGTTC
T ss_pred EeCCCCCCCccccCcc------cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-hhhhccccc
Confidence 8888877765433220 1456777888888888777665655 6777888888888887764333 244443 5
Q ss_pred CCcEEEccCCcccccCCcc--------CcCCCCCCEEEccCCcccccChhhhhcc---CCCCEEEccCCCCCCCCCcc--
Q 047549 228 NLHTIDLGNNNFTGSFPLT--------LTSCMFLTAIRLSGNKIEEQISPTILAL---VSVSYLSINNNNLSNITGAI-- 294 (479)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~-- 294 (479)
+++.+++++|.+.+..+.. +..+++|++|++++|.+++..+..+... .+++.|++++|.........
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 7778888888776543322 2345678888888888887777766554 77888888877554221100
Q ss_pred ------ccc--cCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCc
Q 047549 295 ------GIL--MGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ 366 (479)
Q Consensus 295 ------~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 366 (479)
..+ ...++|+.|++++|.+.+..+..+. .+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcc------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 011 1235677777777777766555443 56677777777777776666677777777777777777
Q ss_pred cccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCe
Q 047549 367 ITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPA 446 (479)
Q Consensus 367 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~ 446 (479)
+.+..+..+..+++|++|++++|++++..|..|.++++|+.
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--------------------------------------- 375 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE--------------------------------------- 375 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE---------------------------------------
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE---------------------------------------
Confidence 77666667777777777777777777666777777777754
Q ss_pred EEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 447 IYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 447 l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
|++++|++++..+..+..+++|+.|++++|+++
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 566666666544455566777777777777653
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=347.39 Aligned_cols=420 Identities=19% Similarity=0.154 Sum_probs=300.7
Q ss_pred CCCEEEEECCCCCccccc-cccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCc--CCCCCC
Q 047549 51 EAQVTHLWLPDRGLRGSI-YPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSG--LGNFSK 123 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~--~~~l~~ 123 (479)
..++++|++++|...+.+ |..+.++++|++|+|++|.+.+..|.. ++|++|++++|.+++ .+|.. ++++++
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD--AVLKDGYFRNLKA 124 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS--CCSTTCCCSSCSS
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc--ccccCccccccCC
Confidence 457788888887555555 667788888888888888887765433 778888888888765 34443 777888
Q ss_pred CcEEEccccccccCCC-ccCCCCCCCCEEECCCCcccccCCcccccc-----CCC-------------CCCCCC------
Q 047549 124 LQTFRAGFSYLSGSIP-DDVSAAASLEDISLPVNQLSGAISNGVVNL-----TSL-------------NIGKLA------ 178 (479)
Q Consensus 124 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~l-------------~~~~~~------ 178 (479)
|++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+..+ ..+ .+..++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 8888888888775443 467788888888888887776665554432 111 122222
Q ss_pred CCCEEEccCCcCccccchhhhc--------------------------------------CCCCCeeeccCCcCccccCc
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMN--------------------------------------CTNLITLNLRINNFRGDLSA 220 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~--------------------------------------l~~L~~L~l~~n~l~~~~~~ 220 (479)
.|++|++++|.+++..+..+.. .++|+.|++++|.+.+ ++.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNS 283 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECS
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cCh
Confidence 3788888888766544433321 2578888888888873 434
Q ss_pred cccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCC
Q 047549 221 YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGC 300 (479)
Q Consensus 221 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~ 300 (479)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..++. ..+..+
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS--SCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh--hhhcCC
Confidence 477888888888888888887777788888888888888888888777888888888888888888876654 356778
Q ss_pred CCCcEEEccCccccccCC--CCccccc-------cccccCCccEEEeeCCcceec-CchhhcCCCCCCEEeCCCCccccc
Q 047549 301 KNLRMLLLCKIFFHEAIP--DENQITI-------SSYAFQNLVVLGIGNCEIKGQ-IPTWLGKLKKLQVLDLGSNQITGP 370 (479)
Q Consensus 301 ~~L~~L~l~~n~~~~~~~--~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~ 370 (479)
++|+.|++++|.+.+... ....+.+ ......+++.+++++|++.+. .+..+..+++|+.|++++|++.+.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 888888888887764211 0000000 001123456666666666542 223456899999999999999865
Q ss_pred cCc-ccCCCCCCcEEEccCCccc-----ccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCC
Q 047549 371 IPG-WLGNMPNLFYIDLSYNSIS-----GEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP 444 (479)
Q Consensus 371 ~~~-~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~ 444 (479)
.+. .+..+++|++|++++|.++ +..+..|.+++.|+.+++++|..... ....+....+|+.+++++|+|+.+|
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC-CTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc-ChhHccchhhhheeECCCCCCCccC
Confidence 433 4566899999999999997 34456788999999999988755433 2345667889999999999998875
Q ss_pred C--------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 P--------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ~--------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
. .|++++|++++..|..+ .+|+.|++++|++.
T Consensus 521 ~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 521 HNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCSCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred hhhhhccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 4 59999999998888765 47899999999874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=339.29 Aligned_cols=384 Identities=16% Similarity=0.175 Sum_probs=308.3
Q ss_pred CCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCC-------------------------------CCCCcC--
Q 047549 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHC-------------------------------QLPSGL-- 118 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~-------------------------------~l~~~~-- 118 (479)
.+++.|+|+++.+.|..|.. ++|++|++++|.+.... ..|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47899999999998876543 89999999999762100 000000
Q ss_pred -----------------CCCCCCcEEEcc--ccccccCCCccCCCCCCCCEEECCCCccccc-----------------C
Q 047549 119 -----------------GNFSKLQTFRAG--FSYLSGSIPDDVSAAASLEDISLPVNQLSGA-----------------I 162 (479)
Q Consensus 119 -----------------~~l~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~ 162 (479)
.....++.+.+. .|++++ +|..++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 011122222222 467887 899999999999999999999984 6
Q ss_pred CccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-Ccc-ccCccccCCC------CCCcEEEc
Q 047549 163 SNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRG-DLSAYNFSTL------HNLHTIDL 234 (479)
Q Consensus 163 ~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~~l------~~L~~L~l 234 (479)
|..+. +.++++|++|++++|.+.+.+|..+..+++|++|++++|. +++ .+|. .+..+ ++|++|++
T Consensus 240 p~~l~------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 240 TEDLK------WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp TSCCC------GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEEC
T ss_pred chhhh------hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEEC
Confidence 66532 1278999999999999999999999999999999999998 887 6765 45554 99999999
Q ss_pred cCCcccccCCc--cCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCC-CcEEEccCc
Q 047549 235 GNNNFTGSFPL--TLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKN-LRMLLLCKI 311 (479)
Q Consensus 235 ~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~-L~~L~l~~n 311 (479)
++|.++ .+|. .+..+++|++|++++|.+++.+| .+..+++|++|++++|.++.++. .+..+++ |+.|++++|
T Consensus 313 ~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA---NFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT---TSEEECTTCCEEECCSS
T ss_pred CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH---hhhhhcccCcEEEccCC
Confidence 999999 8888 89999999999999999997788 89999999999999999986664 4677888 999999999
Q ss_pred cccccCCCCccccccccccCCccEEEeeCCcceecCchhhc-------CCCCCCEEeCCCCccccccCcccCCCCCCcEE
Q 047549 312 FFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG-------KLKKLQVLDLGSNQITGPIPGWLGNMPNLFYI 384 (479)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 384 (479)
.+. .+|..+.. ..+++|++|++++|++++..|..+. .+++|++|++++|++....+..+..+++|++|
T Consensus 388 ~l~-~lp~~~~~----~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L 462 (636)
T 4eco_A 388 KLK-YIPNIFDA----KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462 (636)
T ss_dssp CCS-SCCSCCCT----TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE
T ss_pred cCc-ccchhhhh----cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE
Confidence 998 56654331 2345899999999999988888888 78899999999999995555566779999999
Q ss_pred EccCCcccccCCc-cccCC-------ccccccccccccCCCCcccCcc-cccccccccccccccccCCCC---------e
Q 047549 385 DLSYNSISGEFPK-EFCGL-------PALALQEAKNRADGNQLQLPLF-VPETKCALYNQQYNKLFSLPP---------A 446 (479)
Q Consensus 385 ~L~~N~l~~~~p~-~~~~l-------~~L~~l~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~n~l~~~~~---------~ 446 (479)
++++|+++ .+|. .+... +.|+.+++++|..... +...+ ....+|+.+++++|+++.+|. .
T Consensus 463 ~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 463 NLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp ECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred ECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 99999999 5554 34333 3899999988765532 21111 267889999999999998875 5
Q ss_pred EEc------cCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 447 IYL------RNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 447 l~l------s~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
|++ ++|++.+.+|..+.++++|+.|++++|+++
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 888 568889999999999999999999999974
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=335.57 Aligned_cols=398 Identities=18% Similarity=0.179 Sum_probs=270.2
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
+++++|++++|.+++..|..+..+++|++|++++|++++..+. .++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---KISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---EEECC--CCCCCSEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---ecCcc--ccCCccEE
Confidence 5788899999888887778888889999999999988877442 378899999999887 46665 78889999
Q ss_pred Ecccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCC--CEEEccCCcC--ccccchhhhcCC
Q 047549 128 RAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANL--KSLKLHTNSL--SGFLPQFLMNCT 202 (479)
Q Consensus 128 ~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l~ 202 (479)
++++|.+++ .+|..++++++|++|++++|.+++. . +..+++| ++|++++|.+ ++..|..+..+.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~--------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S--------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G--------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccchh---h--------ccccccceeeEEEeecccccccccccccccccc
Confidence 999998876 4678888888999999988887652 1 3445566 8888888888 666666665543
Q ss_pred -CCCeeeccCCcCccccCccccCCCCCCcEEEccCCc-------ccccCCccCcCCCCCCEEEccCCc------------
Q 047549 203 -NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNN-------FTGSFPLTLTSCMFLTAIRLSGNK------------ 262 (479)
Q Consensus 203 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~~L~~L~l~~n~------------ 262 (479)
+...+++++|.+.+.++...+..+++|+.+++++|. +.+.+| .+..+++|+.|++++|.
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence 222445555555555554455556666666666654 333333 34444444444444444
Q ss_pred ---------------ccccChhhh-----hccCCCCEEEccCCCCCCCCC-ccccccCCCCCcEEEccCccccccCCCCc
Q 047549 263 ---------------IEEQISPTI-----LALVSVSYLSINNNNLSNITG-AIGILMGCKNLRMLLLCKIFFHEAIPDEN 321 (479)
Q Consensus 263 ---------------l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 321 (479)
+++..|..+ ..+++|+.+++++|.+ .+|. .+..+....+|+.|++++|.+.....
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--- 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--- 319 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---
Confidence 433333333 3344444444444433 2221 01111111345555555555433211
Q ss_pred cccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc--ccCcccCCCCCCcEEEccCCcccccCCc-c
Q 047549 322 QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG--PIPGWLGNMPNLFYIDLSYNSISGEFPK-E 398 (479)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~ 398 (479)
...+++|++|++++|++++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++.+|. .
T Consensus 320 -----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 320 -----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp -----CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred -----hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 0256788888888888887778888888888888888888885 4556788888888888888888874554 4
Q ss_pred ccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC---------eEEccCCcccccCChh-hhccccc
Q 047549 399 FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP---------AIYLRNNGLNGSIPIE-IGNVMFL 468 (479)
Q Consensus 399 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~---------~l~ls~n~l~~~~~~~-~~~~~~L 468 (479)
+..++.|+.+++++|....... ... ..+++.+++++|+++.+|. .|++++|+++ .+|.. +..+++|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~--~~l-~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIF--RCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG--GSC-CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred hccCccCCEEECcCCCCCcchh--hhh-cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 7788888888887765432211 111 1578888888888887764 5999999999 67765 8999999
Q ss_pred CeeeCCCCCCC
Q 047549 469 HVLDLSLNNFS 479 (479)
Q Consensus 469 ~~L~ls~N~l~ 479 (479)
+.|++++|+++
T Consensus 471 ~~L~l~~N~~~ 481 (520)
T 2z7x_B 471 QKIWLHTNPWD 481 (520)
T ss_dssp CEEECCSSCBC
T ss_pred cEEECcCCCCc
Confidence 99999999975
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=343.28 Aligned_cols=377 Identities=18% Similarity=0.178 Sum_probs=272.0
Q ss_pred CcCCCcCCCC---CCCCEEEcCCcccccC---------------CCCCCcCC--CCCCCcEEEccccccccCCCccCCCC
Q 047549 86 NHLSFLSPSV---PFLSILDFSHNYFRGH---------------CQLPSGLG--NFSKLQTFRAGFSYLSGSIPDDVSAA 145 (479)
Q Consensus 86 n~l~~~~~~~---~~L~~L~L~~n~l~~~---------------~~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l 145 (479)
|+++++++.+ ++|++|+|++|.+++. +.+|..++ ++++|++|++++|.+.+.+|..+.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666644333 7788888888887740 01787777 88888888888888888888888888
Q ss_pred CCCCEEECCCCc-ccc-cCCccccccCCCCCCCCCCCCEEEccCCcCccccch--hhhcCCCCCeeeccCCcCccccCcc
Q 047549 146 ASLEDISLPVNQ-LSG-AISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ--FLMNCTNLITLNLRINNFRGDLSAY 221 (479)
Q Consensus 146 ~~L~~L~l~~n~-l~~-~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (479)
++|++|++++|+ +++ .+|..+..+.. .+..+++|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHH-CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhh-cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence 888888888887 777 67766655431 2456678888888888888 6676 7888888888888888887 676
Q ss_pred ccCCCCCCcEEEccCCcccccCCccCcCCCC-CCEEEccCCcccccChhhhhccC--CCCEEEccCCCCCCCCCcc-ccc
Q 047549 222 NFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF-LTAIRLSGNKIEEQISPTILALV--SVSYLSINNNNLSNITGAI-GIL 297 (479)
Q Consensus 222 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~-~~l 297 (479)
.+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|.+.+..+.+ ..+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6778888888888888888 77777888887 888888888887 4566665554 3888888888886543211 122
Q ss_pred c--CCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcC--------CCCCCEEeCCCCcc
Q 047549 298 M--GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK--------LKKLQVLDLGSNQI 367 (479)
Q Consensus 298 ~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~l 367 (479)
. .+++|+.|++++|.+. .+|.... ..+++|+.|++++|+++ .+|..+.. +++|+.|+|++|++
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~-----~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELF-----ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHH-----HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHH-----ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCC
Confidence 2 3457888888888877 3333221 14577888888888887 45544332 23788888888888
Q ss_pred ccccCcccC--CCCCCcEEEccCCcccccCCccccCCcccccccccccc--CCC--Cccc-Ccccccccccccccccccc
Q 047549 368 TGPIPGWLG--NMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA--DGN--QLQL-PLFVPETKCALYNQQYNKL 440 (479)
Q Consensus 368 ~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~--~~~--~~~~-~~~~~~~~l~~~~l~~n~l 440 (479)
. .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.+++++|. ... .... ..+....+|+.+++++|++
T Consensus 741 ~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 741 T-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp C-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred c-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 8 6677776 78888888888888885 67778888888888886533 111 0111 2445567788888888888
Q ss_pred cCCCC-------eEEccCCcccccCChhhhcccccCeeeCCCCCC
Q 047549 441 FSLPP-------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 441 ~~~~~-------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
..+|. .|++++|++....+..+.....+..+.+.+|++
T Consensus 819 ~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 819 RKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCSCCCSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CccCHhhcCCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 77765 599999999977778888777777787777764
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=322.70 Aligned_cols=401 Identities=19% Similarity=0.184 Sum_probs=315.6
Q ss_pred EECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 57 LWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 57 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++-++.+++ .+|..+. +++++|++++|.+++..+. +++|++|++++|.+++ ..+..+.++++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCC
Confidence 444444554 3455443 5899999999999887653 3899999999999985 34567899999999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcc-ccchhhhcCCCCCeeeccC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG-FLPQFLMNCTNLITLNLRI 211 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~ 211 (479)
.+++..+..|.++++|++|++++|.+++..+.. ++.+++|++|++++|.+++ .+|..+.++++|++|++++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCS--------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred cCCccCHhhhcCccccccccccccccccCCCcc--------ccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 999777889999999999999999988654433 5678999999999999987 3689999999999999999
Q ss_pred CcCccccCccccCCCCCC----cEEEccCCcccccCCccCcCCCCCCEEEccCC--------------------------
Q 047549 212 NNFRGDLSAYNFSTLHNL----HTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN-------------------------- 261 (479)
Q Consensus 212 n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-------------------------- 261 (479)
|.+. .++...+..+++| +++++++|.+++..|..+... +|+.|++++|
T Consensus 159 n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp SCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred Cccc-eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 9998 4544467777777 899999999997777666555 6888888776
Q ss_pred --------------------------------cccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEcc
Q 047549 262 --------------------------------KIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309 (479)
Q Consensus 262 --------------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~ 309 (479)
.+.+..+..+..+++|+.|++++|.++.++.. +..+ +|+.|+++
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~---~~~~-~L~~L~l~ 312 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNF-GWQHLELV 312 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC---CSCC-CCSEEEEE
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh---hccC-CccEEeec
Confidence 33344566778889999999999999877643 3344 66677776
Q ss_pred CccccccCCCCcc--------------ccccccccCCccEEEeeCCcceecC--chhhcCCCCCCEEeCCCCccccccCc
Q 047549 310 KIFFHEAIPDENQ--------------ITISSYAFQNLVVLGIGNCEIKGQI--PTWLGKLKKLQVLDLGSNQITGPIPG 373 (479)
Q Consensus 310 ~n~~~~~~~~~~~--------------~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~ 373 (479)
+|.+. .+|.... .......+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+.
T Consensus 313 ~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 313 NCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp SCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred cCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 66655 2222100 0001136788999999999988653 67888999999999999999865444
Q ss_pred ccCCCCCCcEEEccCCcccccCC-ccccCCccccccccccccCCCCcccCccccccccccccccccccc--CCC------
Q 047549 374 WLGNMPNLFYIDLSYNSISGEFP-KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLF--SLP------ 444 (479)
Q Consensus 374 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~--~~~------ 444 (479)
+..+++|++|++++|.+++..| ..+.++++|+.++++++...... ...+....+|+.+++++|+++ .+|
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 8899999999999999997766 57899999999999887543322 234566788999999999886 233
Q ss_pred ---CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 ---PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ---~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|++++..|..+.++++|+.|++++|+++
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 36999999999888999999999999999999875
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=321.31 Aligned_cols=402 Identities=16% Similarity=0.160 Sum_probs=293.4
Q ss_pred EeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCC
Q 047549 47 KCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFS 122 (479)
Q Consensus 47 ~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~ 122 (479)
.|...+ + .+.++++++ .+|+.+. ++|++|++++|++++.++. .++|++|++++|.+++ ..|..+..++
T Consensus 3 ~C~~~~-~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~ 74 (549)
T 2z81_A 3 SCDASG-V--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLG 74 (549)
T ss_dssp EECTTS-E--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCT
T ss_pred cCCCCc-e--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccc
Confidence 465444 2 788888887 4566554 7999999999999887653 3899999999999985 4557899999
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCc-Cccccchhhhc
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNS-LSGFLPQFLMN 200 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 200 (479)
+|++|++++|.+.+..+..+.++++|++|++++|.+++. .|.. +.++++|++|++++|. +....+..+..
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL--------FPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS--------CTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh--------hhccCCccEEECCCCccccccCHhhhhc
Confidence 999999999999977667799999999999999998863 3332 5678999999999998 44444468899
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCcc-CcCCCCCCEEEccCCcccccC--h-hhhhccCC
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQI--S-PTILALVS 276 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~ 276 (479)
+++|++|++++|.+.+..+. .+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+++.. + .....+++
T Consensus 147 l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp CCEEEEEEEEETTCCEECTT-TTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred ccccCeeeccCCcccccChh-hhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 99999999999999865554 7888999999999999876 33433 356899999999999998742 1 22234567
Q ss_pred CCEEEccCCCCCCCCC--ccccccCCC-----------------------------------------------------
Q 047549 277 VSYLSINNNNLSNITG--AIGILMGCK----------------------------------------------------- 301 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~--~~~~l~~~~----------------------------------------------------- 301 (479)
|+.|++++|.+++... ....+..++
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh
Confidence 7777777765542100 001112222
Q ss_pred ------CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch---hhcCCCCCCEEeCCCCccccccC
Q 047549 302 ------NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT---WLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 302 ------~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
+|+.|++++|.+. .+|.... ..+++|++|++++|++++..|. .+..+++|++|++++|++++..+
T Consensus 305 ~~~~~~~L~~L~l~~n~l~-~ip~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 305 VYSLLEKVKRITVENSKVF-LVPCSFS-----QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp HHHHSTTCCEEEEESSCCC-CCCHHHH-----HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred hhhhcccceEEEeccCccc-cCCHHHH-----hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 3333333333332 1121110 2467888888888888765543 36678888888888888875432
Q ss_pred --cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCC------
Q 047549 373 --GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP------ 444 (479)
Q Consensus 373 --~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~------ 444 (479)
..+..+++|++|++++|+++ .+|..+..+++|+.+++++|...... ... ...++.+++++|++++++
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~---~~~-~~~L~~L~Ls~N~l~~~~~~l~~L 453 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK---TCI-PQTLEVLDVSNNNLDSFSLFLPRL 453 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC---TTS-CTTCSEEECCSSCCSCCCCCCTTC
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc---chh-cCCceEEECCCCChhhhcccCChh
Confidence 45778888888888888888 67888888888888888876643321 111 257888999999888654
Q ss_pred CeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 445 PAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 445 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
..|++++|+++ .+|. ...+++|++|++++|+++
T Consensus 454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred cEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 36999999999 7776 577999999999999885
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=301.19 Aligned_cols=265 Identities=28% Similarity=0.430 Sum_probs=165.3
Q ss_pred ccChhhHHHHHHhHhcCCCCC--CCCCCCCCCcc--ceeEEeCCC---CCEEEEECCCCCccc--cccccccCCCCCCee
Q 047549 11 ACNQIDQETLLSLNFNASNPP--LNWSFSTDCCL--WEGIKCDSE---AQVTHLWLPDRGLRG--SIYPFTGKLTHLCHL 81 (479)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~--~~w~~~~~~c~--w~~v~c~~~---~~l~~L~l~~~~l~~--~~~~~l~~l~~L~~L 81 (479)
+|.++|+.||++||+++.++. ..|..+.+||. |.||.|+.. ++|++|+++++++++ .+|+.+..+++|++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L 81 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL 81 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence 588999999999999997654 78988889998 999999864 799999999999999 899999999999999
Q ss_pred ecCC-CcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 82 NLSH-NHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 82 ~L~~-n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
++++ |.+.+..|. .++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 9984 777654432 1555555555555543 44555555555555555555555555555555555555555555
Q ss_pred cccccCCccccccCCCCCCCCC-CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEcc
Q 047549 157 QLSGAISNGVVNLTSLNIGKLA-NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (479)
.+++.+|..+. .++ +|++|++++|.+++..|..+..++ |++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 160 ~l~~~~p~~l~--------~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 160 RISGAIPDSYG--------SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLA 229 (313)
T ss_dssp CCEEECCGGGG--------CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSCCSEEECC
T ss_pred cccCcCCHHHh--------hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCCCCCEEECC
Confidence 55544444322 233 455555555555555555555544 5555555555543222 244555555555555
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+|.+++..|. +..+++|++|++++|.+++..|..+..+++|++|++++|+++
T Consensus 230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 5555433332 444455555555555555445555555555555555555444
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=312.29 Aligned_cols=392 Identities=19% Similarity=0.192 Sum_probs=271.7
Q ss_pred EEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 54 VTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 54 l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.++++++++++++ +|..+. ++|++|++++|.+++.++. .++|++|++++|.+++ ..|..+..+++|++|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTTTTCTTCCEEEC
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc--CCHHHhCCCCCCCEEEC
Confidence 3899999999986 666554 8999999999999988643 3899999999999985 45778999999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC--Ce
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL--IT 206 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~ 206 (479)
++|.++ .+|.. .+++|++|++++|.+++. .|.. +.++++|++|++++|.+++. .+..+++| +.
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~--------~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~ 173 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKE--------FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC 173 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGG--------GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHh--------hcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence 999998 66765 799999999999998864 3444 56689999999999999853 45555666 99
Q ss_pred eeccCCcC--ccccCccccC--------------------------CCCCCcEEEccCCcc-----cccCCccCcCCCCC
Q 047549 207 LNLRINNF--RGDLSAYNFS--------------------------TLHNLHTIDLGNNNF-----TGSFPLTLTSCMFL 253 (479)
Q Consensus 207 L~l~~n~l--~~~~~~~~~~--------------------------~l~~L~~L~l~~n~l-----~~~~~~~~~~~~~L 253 (479)
|++++|.+ .+..+. .+. .+++|+.+++++|.. .+. ...+..+++|
T Consensus 174 L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L 251 (562)
T 3a79_B 174 ILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTL 251 (562)
T ss_dssp EEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSC
T ss_pred EEeecccccccccCcc-cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcc
Confidence 99999988 533332 232 334455555555421 000 0112222333
Q ss_pred CEEEccCCcccccChhh---hhccCCCCEEEccCCCCC-CCCCcc----------------------------ccccCCC
Q 047549 254 TAIRLSGNKIEEQISPT---ILALVSVSYLSINNNNLS-NITGAI----------------------------GILMGCK 301 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~-~~~~~~----------------------------~~l~~~~ 301 (479)
+.++++++.+.+..... .....+|++|++++|.++ .+|..+ ..+....
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 33333332222110000 011224555555555544 222211 0011123
Q ss_pred CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccc--cCcccCCCC
Q 047549 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGP--IPGWLGNMP 379 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~ 379 (479)
+|+.|++++|.+...... ..+++|++|++++|++++..|..+..+++|++|++++|++++. .|..+..++
T Consensus 332 ~L~~L~l~~n~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCP--------PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp CCSEEEEESSCCCCCCCC--------SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred cceEEEccCCCcccccCc--------cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 466677766665432110 2567889999999998877888888899999999999988852 346688889
Q ss_pred CCcEEEccCCcccccCC-ccccCCccccccccccccCCCCcccCccccc-ccccccccccccccCCCC---------eEE
Q 047549 380 NLFYIDLSYNSISGEFP-KEFCGLPALALQEAKNRADGNQLQLPLFVPE-TKCALYNQQYNKLFSLPP---------AIY 448 (479)
Q Consensus 380 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~n~l~~~~~---------~l~ 448 (479)
+|++|++++|++++.+| ..+..++.|+.+++++|...... +... .+++.+++++|+++.+|. .|+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELN 479 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEE
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEE
Confidence 99999999999987455 45788888988888876543211 1122 578889999999888764 599
Q ss_pred ccCCcccccCChh-hhcccccCeeeCCCCCCC
Q 047549 449 LRNNGLNGSIPIE-IGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 449 ls~n~l~~~~~~~-~~~~~~L~~L~ls~N~l~ 479 (479)
+++|+++ .+|.. +..+++|+.|++++|+++
T Consensus 480 L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 480 VASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 9999999 67766 999999999999999874
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=302.83 Aligned_cols=351 Identities=18% Similarity=0.167 Sum_probs=285.3
Q ss_pred eeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCC-CccCCCCCCCCEEECCCCcc
Q 047549 80 HLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSI-PDDVSAAASLEDISLPVNQL 158 (479)
Q Consensus 80 ~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l 158 (479)
.++.+++.++.++.-.++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPELPAHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCSSCCCE--ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCCCCCccCEEEecCCccCc--CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3455555555555533789999999999985 45778999999999999999987444 56799999999999999999
Q ss_pred cccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh--hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccC
Q 047549 159 SGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF--LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236 (479)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 236 (479)
++..|.. +.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+...+..+++|++|++++
T Consensus 92 ~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 92 LQLETGA--------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp CEECTTT--------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred CccChhh--------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 8877765 566899999999999999765555 889999999999999998555654488999999999999
Q ss_pred CcccccCCccCcCC--CCCCEEEccCCcccccChhhh--------hccCCCCEEEccCCCCCCCC-CccccccCCCCCcE
Q 047549 237 NNFTGSFPLTLTSC--MFLTAIRLSGNKIEEQISPTI--------LALVSVSYLSINNNNLSNIT-GAIGILMGCKNLRM 305 (479)
Q Consensus 237 n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~-~~~~~l~~~~~L~~ 305 (479)
|.+++..+..+..+ .+|+.+++++|.+.+..+..+ ..+++|++|++++|.++... ..+......++|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 99998888877766 689999999999987654432 35578999999999987432 22222334588999
Q ss_pred EEccCccccccCCCCcc------ccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCC
Q 047549 306 LLLCKIFFHEAIPDENQ------ITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMP 379 (479)
Q Consensus 306 L~l~~n~~~~~~~~~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 379 (479)
|++++|...+....... ..+.....++|++|++++|++++..|..+..+++|++|++++|++.+..|..|..++
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 323 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc
Confidence 99998866543221111 111112346899999999999988899999999999999999999988888999999
Q ss_pred CCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCC
Q 047549 380 NLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIP 459 (479)
Q Consensus 380 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~ 459 (479)
+|++|++++|.+++..|..|.+++.|+. |++++|++++..|
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~---------------------------------------L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEV---------------------------------------LDLSYNHIRALGD 364 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCE---------------------------------------EECCSSCCCEECT
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCE---------------------------------------EECCCCcccccCh
Confidence 9999999999999888888888888864 7899999998889
Q ss_pred hhhhcccccCeeeCCCCCCC
Q 047549 460 IEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 460 ~~~~~~~~L~~L~ls~N~l~ 479 (479)
..+..+++|+.|++++|+++
T Consensus 365 ~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 365 QSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCS
T ss_pred hhccccccccEEECCCCccc
Confidence 99999999999999999985
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=316.28 Aligned_cols=400 Identities=16% Similarity=0.129 Sum_probs=305.4
Q ss_pred EEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC----CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcc
Q 047549 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP----SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAG 130 (479)
Q Consensus 55 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~ 130 (479)
++|++++++++ .+|..+. ++|++|++++|.+++.++ ..++|++|++++|.+++ ..|..++++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC--cChHHhhcccCCCEEecC
Confidence 47899999998 4677665 899999999999998764 34899999999999985 447789999999999999
Q ss_pred ccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC--Cee
Q 047549 131 FSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL--ITL 207 (479)
Q Consensus 131 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L 207 (479)
+|+++ .+|.. .+++|++|++++|.+++. +|.. ++++++|++|++++|.+++ ..+..+++| +.|
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~--------~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE--------FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKV 143 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG--------GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEE
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhh--------hccCCcceEEEecCcccch---hhccccccceeeEE
Confidence 99998 56665 799999999999999863 5554 5568899999999999885 456777888 999
Q ss_pred eccCCcC--ccccCccccCCCC-CCcEEEccCCcccccCC-ccCcCCCCCCEEEccCCc-------ccccChhhhhccCC
Q 047549 208 NLRINNF--RGDLSAYNFSTLH-NLHTIDLGNNNFTGSFP-LTLTSCMFLTAIRLSGNK-------IEEQISPTILALVS 276 (479)
Q Consensus 208 ~l~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~ 276 (479)
++++|.+ .+..+. .+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|. +.+.++ .+..+++
T Consensus 144 ~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~ 221 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK 221 (520)
T ss_dssp EEEECTTTTSSCCTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred Eeecccccccccccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence 9999998 544443 444443 34467888888776554 356778999999999997 555444 6777787
Q ss_pred CCEEEccCCCCCCCCC-ccccccCCCCCcEEEccCccccccCCCCcccccccccc-------------------------
Q 047549 277 VSYLSINNNNLSNITG-AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF------------------------- 330 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~------------------------- 330 (479)
|+.|++++|.++.... ........++|+.|++++|.+.+.+|...... ....+
T Consensus 222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~ 300 (520)
T 2z7x_B 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300 (520)
T ss_dssp CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC-CSCCCCEEEEEEEEECCCCSCTHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc-ccccCceeEeccccccceecchhhhhcccc
Confidence 7777777766542100 00001123467777777777666555443100 00012
Q ss_pred -CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc--cCCccccCCccccc
Q 047549 331 -QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG--EFPKEFCGLPALAL 407 (479)
Q Consensus 331 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~ 407 (479)
.+|+.|++++|++.... .+..+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..+.++++|+.
T Consensus 301 ~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 301 NMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred cCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 34677777777665321 12688999999999999998889999999999999999999997 56788999999999
Q ss_pred cccccccCCCCcccCcccccccccccccccccccC-----C---CCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 408 QEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFS-----L---PPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~-----~---~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
+++++|......+...+....+++.+++++|+++. + ...|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 99998876654444556777899999999999852 2 247999999999 89999999999999999999985
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=308.82 Aligned_cols=394 Identities=18% Similarity=0.174 Sum_probs=242.7
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCC-cCCCCCCCcE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQT 126 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~ 126 (479)
..+++|+|++|++++..+.++.++++|++|+|++|+|+++++.. ++|++|+|++|.++ .+|. .|.++++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCCCCCE
Confidence 47999999999999888889999999999999999999887653 89999999999998 4564 6899999999
Q ss_pred EEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 127 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
|++++|++++..+..|+++++|++|++++|.++.. .|.. +..+++|++|++++|++++..+..+..+.+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh--------hccchhhhhhcccCccccccccccccchhhhh
Confidence 99999999976667799999999999999998764 3443 45688999999999999877776665544332
Q ss_pred ----eeeccCCcCccccCccc-----------------------------------------------------------
Q 047549 206 ----TLNLRINNFRGDLSAYN----------------------------------------------------------- 222 (479)
Q Consensus 206 ----~L~l~~n~l~~~~~~~~----------------------------------------------------------- 222 (479)
.++++.|.+. .++...
T Consensus 201 ~~~~~~~ls~n~l~-~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 201 LLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhcccCccc-ccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 3444444332 111000
Q ss_pred ----------------------cCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccCh------------
Q 047549 223 ----------------------FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQIS------------ 268 (479)
Q Consensus 223 ----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------ 268 (479)
+....+++.+.+.++.+... ..+.....++.|++.+|.+....+
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 00011122222222221110 112222334444444433322111
Q ss_pred -------hhhhccCCCCEEEccCCCCCCCCCccccc-----------------------cCCCCCcEEEccCccccccCC
Q 047549 269 -------PTILALVSVSYLSINNNNLSNITGAIGIL-----------------------MGCKNLRMLLLCKIFFHEAIP 318 (479)
Q Consensus 269 -------~~~~~l~~L~~L~L~~n~l~~~~~~~~~l-----------------------~~~~~L~~L~l~~n~~~~~~~ 318 (479)
.....+++|+.++++.|.+.......... ..+++|+.+++..+......+
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 11223456666666666554322222223 334444444444444333322
Q ss_pred CCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc-cccCcccCCCCCCcEEEccCCcccccCCc
Q 047549 319 DENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT-GPIPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
.... ..+.+++.++++.|.+....+..+..++.++.|++++|.+. ...|..|..+++|++|+|++|++++..|.
T Consensus 438 ~~~~-----~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~ 512 (635)
T 4g8a_A 438 FSVF-----LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512 (635)
T ss_dssp SCTT-----TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccc-----ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH
Confidence 2111 13455566666666665555555556666666666666533 23455556666666666666666655566
Q ss_pred cccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcc-cccCeeeCCCC
Q 047549 398 EFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNV-MFLHVLDLSLN 476 (479)
Q Consensus 398 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~-~~L~~L~ls~N 476 (479)
.|.++++|+.|++++|....... ..+...++| ..|++++|++++..|..+.++ ++|+.|++++|
T Consensus 513 ~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L--------------~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSL--------------QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCC-GGGTTCTTC--------------CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred HHcCCCCCCEEECCCCcCCCCCh-hHHhCCCCC--------------CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 66666666665555543221110 111111111 368999999999999999998 68999999999
Q ss_pred CCC
Q 047549 477 NFS 479 (479)
Q Consensus 477 ~l~ 479 (479)
+|+
T Consensus 578 p~~ 580 (635)
T 4g8a_A 578 DFA 580 (635)
T ss_dssp CBC
T ss_pred CCc
Confidence 985
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=297.72 Aligned_cols=286 Identities=18% Similarity=0.202 Sum_probs=166.4
Q ss_pred CeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCc
Q 047549 79 CHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQ 157 (479)
Q Consensus 79 ~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 157 (479)
+.++.++++++.++... +.+++|++++|.+++ ..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE--ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccce--ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666666666555443 455555555555543 223345555555555555555554445555555555555555554
Q ss_pred ccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCC
Q 047549 158 LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN 237 (479)
Q Consensus 158 l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 237 (479)
++ ...+..|..+++|++|++++|.+.+ +....+..+++|++|++++|
T Consensus 92 l~--------------------------------~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 92 LK--------------------------------LIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CC--------------------------------SCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCT
T ss_pred CC--------------------------------ccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCC
Confidence 44 3333334444445555555554442 22224445555555555555
Q ss_pred cccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccC
Q 047549 238 NFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAI 317 (479)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (479)
.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|...+.+
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEE
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCcccccc
Confidence 5554445555555556666666665555555555556666666666665554432 33555566666666666555544
Q ss_pred CCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCc
Q 047549 318 PDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
+.... ...+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++++..|.
T Consensus 217 ~~~~~------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 217 TPNCL------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CTTTT------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred Ccccc------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 43322 234778888888877754445677778888888888887766666777778888888888888777777
Q ss_pred cccCCccccc
Q 047549 398 EFCGLPALAL 407 (479)
Q Consensus 398 ~~~~l~~L~~ 407 (479)
.|.++++|+.
T Consensus 291 ~~~~l~~L~~ 300 (477)
T 2id5_A 291 AFRGLNYLRV 300 (477)
T ss_dssp TBTTCTTCCE
T ss_pred HhcCcccCCE
Confidence 7777777765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=295.31 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=265.2
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.+++.|+++++.++. ++ .+..+++|++|++++|.+++.++ ..++|++|++++|.+.+ ++. +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD---ITP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CGG-GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCcccc---Chh-hcCCCCCCEEEC
Confidence 478899999988875 33 47889999999999999888754 33889999999999884 444 888999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
++|.+.+. +. +..+++|++|++++|.+.+. +. +..+++|++|++. +.+.+.. .+..+++|+.|++
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~---------~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISDI-SA---------LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-GG---------GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEEC
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-hh---------hccCCcccEeecC-CcccCch--hhccCCCCCEEEC
Confidence 99998844 33 88899999999999987753 21 5668889999886 4454332 3788899999999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
++|.+. .++ .+..+++|++|++++|.+++..| +..+++|+.|++++|.+++. +.+..+++|+.|++++|.++.
T Consensus 185 ~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 185 SSNKVS-DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred cCCcCC-CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence 999886 443 47788899999999998886544 67788899999999988764 457788899999999998876
Q ss_pred CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
.+. +..+++|+.|++++|.+.+..+ . ..+++|++|++++|++.+..+ +..+++|+.|++++|++.+
T Consensus 258 ~~~----~~~l~~L~~L~l~~n~l~~~~~--~------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 258 LAP----LSGLTKLTELKLGANQISNISP--L------AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CGG----GTTCTTCSEEECCSSCCCCCGG--G------TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred chh----hhcCCCCCEEECCCCccCcccc--c------cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 543 6788899999999988876433 1 367889999999998885443 7788999999999999886
Q ss_pred ccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCC
Q 047549 370 PIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLP 444 (479)
Q Consensus 370 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~ 444 (479)
..| +..+++|++|++++|++++. ..+.+++.|+.+++++|...+..+ +.....++.+++++|+++.+|
T Consensus 324 ~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 324 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCC
T ss_pred chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCc
Confidence 655 67888999999999988864 467888888888887765544332 444555555555555555544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=290.62 Aligned_cols=360 Identities=21% Similarity=0.279 Sum_probs=204.9
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC-----------------CCCCEEEcCCcccccCCCC
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV-----------------PFLSILDFSHNYFRGHCQL 114 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-----------------~~L~~L~L~~n~l~~~~~l 114 (479)
.++++|+++++.+ +.+|++++++++|++|++++|.+.+..|.. ..+++|++++|.++ .+
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~---~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS---SL 86 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS---CC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc---cC
Confidence 4677888888887 677888888888888888888777554432 13577888888777 34
Q ss_pred CCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcccc
Q 047549 115 PSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFL 194 (479)
Q Consensus 115 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~ 194 (479)
|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +. ..++|++|++++|.+++ +
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~-----------~~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD-----------LPPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS-----------CCTTCCEEECCSSCCSS-C
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC-----------CCCCCCEEECcCCCCCC-C
Confidence 442 2577888888887774 5543 36778888877776642 11 02577777777777775 4
Q ss_pred chhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhcc
Q 047549 195 PQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274 (479)
Q Consensus 195 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 274 (479)
| .+..+++|++|++++|.+. .++. ..++|++|++++|.+++ +| .+..+++|+.|++++|.+++. |.. .
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~ 214 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---P 214 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---C
T ss_pred c-ccCCCCCCCEEECCCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---c
Confidence 5 4777777777777777776 3443 23477777777777774 45 467777777777777777662 221 2
Q ss_pred CCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCC
Q 047549 275 VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354 (479)
Q Consensus 275 ~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 354 (479)
.+|++|++++|.++.++. +..+++|+.|++++|.+.+ +|. .+++|++|++++|++++ +|.. .
T Consensus 215 ~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE----LQNLPFLTTIYADNNLLKT-LPD---------LPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp TTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSS-CCS---------CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred CcccEEECcCCcCCcccc----cCCCCCCCEEECCCCcCCc-ccc---------cccccCEEECCCCcccc-cCcc---c
Confidence 477777777777775542 5667777777777777664 222 23567777777777764 4432 3
Q ss_pred CCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC-ccccccccccccCCCCcccCccccccccccc
Q 047549 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL-PALALQEAKNRADGNQLQLPLFVPETKCALY 433 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (479)
++|++|++++|++.+ +|.. .++|++|++++|++++ ++ .+ ++|+.+++++|..... +.. ..+++.+
T Consensus 277 ~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~l---p~~--~~~L~~L 342 (454)
T 1jl5_A 277 QSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIEL---PAL--PPRLERL 342 (454)
T ss_dssp TTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCC---CCC--CTTCCEE
T ss_pred CcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccccc---ccc--CCcCCEE
Confidence 567777777777764 2211 2566777777776664 22 22 3566666655443321 111 3556666
Q ss_pred ccccccccCCCC------eEEccCCcccc--cCChhhhcc-------------cccCeeeCCCCCCC
Q 047549 434 NQQYNKLFSLPP------AIYLRNNGLNG--SIPIEIGNV-------------MFLHVLDLSLNNFS 479 (479)
Q Consensus 434 ~l~~n~l~~~~~------~l~ls~n~l~~--~~~~~~~~~-------------~~L~~L~ls~N~l~ 479 (479)
++++|+++++|. .|++++|++++ .+|.++..+ ++|+.|++++|+++
T Consensus 343 ~L~~N~l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 343 IASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred ECCCCccccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 777776666543 56777777776 567777666 78999999999874
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=298.65 Aligned_cols=338 Identities=19% Similarity=0.199 Sum_probs=218.9
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~ 126 (479)
.+++++|++++|.+++..+..+..+++|++|++++|++++..+.. ++|++|++++|.++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~--~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ---NISCC--PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC---EECSC--CCTTCSE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC---ccCcc--ccccCCE
Confidence 468999999999999988889999999999999999999886543 89999999999998 57776 8999999
Q ss_pred EEcccccccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCC--CEEEccCCcC--ccccchhhhcC
Q 047549 127 FRAGFSYLSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANL--KSLKLHTNSL--SGFLPQFLMNC 201 (479)
Q Consensus 127 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L--~~L~L~~n~l--~~~~~~~l~~l 201 (479)
|++++|.+.+ .+|..+.++++|++|++++|.+++. . +..+++| ++|++++|.+ ++..|..+..+
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~--------~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D--------LLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T--------TGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC---c--------hhhhhhceeeEEEeecccccccccCccccccc
Confidence 9999999986 3468899999999999999988752 2 3334555 9999999988 55555444432
Q ss_pred --------------------------C-----------------------------------------------------
Q 047549 202 --------------------------T----------------------------------------------------- 202 (479)
Q Consensus 202 --------------------------~----------------------------------------------------- 202 (479)
+
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 2
Q ss_pred --CCCeeeccCCcCccccCcccc----CCC--------------------------CCCcEEEccCCcccccCCccCcCC
Q 047549 203 --NLITLNLRINNFRGDLSAYNF----STL--------------------------HNLHTIDLGNNNFTGSFPLTLTSC 250 (479)
Q Consensus 203 --~L~~L~l~~n~l~~~~~~~~~----~~l--------------------------~~L~~L~l~~n~l~~~~~~~~~~~ 250 (479)
+|++|++++|.+.+.+|...+ ..+ .+|++|++++|.+.... ....+
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 333444444444333332111 111 12333333333332110 01455
Q ss_pred CCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccccccc
Q 047549 251 MFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF 330 (479)
Q Consensus 251 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 330 (479)
++|++|++++|.+++..|..+..+++|++|++++|++++++.....+..+++|+.|++++|.+.+.++.... ..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-----~~l 427 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-----AWA 427 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-----CCC
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-----cCc
Confidence 666666666666666566666666666666666666665443333455666666666666666654443221 144
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~ 410 (479)
++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..++.|+.+++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 5666666666666554443332 46666666666666 44544446666666666666666322223666666666555
Q ss_pred cccc
Q 047549 411 KNRA 414 (479)
Q Consensus 411 ~~~~ 414 (479)
++|.
T Consensus 505 ~~N~ 508 (562)
T 3a79_B 505 HDNP 508 (562)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=289.59 Aligned_cols=314 Identities=19% Similarity=0.177 Sum_probs=265.2
Q ss_pred EECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 57 LWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 57 L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++.++.+++ .+|..+. +++++|++++|++++..+. +++|++|++++|.+++ ..|..+.++++|++|++++|
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE--eChhhhhCCccCCEEECCCC
Confidence 444455555 3455543 5899999999999988654 3899999999999985 45788999999999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.++...+..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhH--------ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 999665567899999999999999998776654 567899999999999999888889999999999999999
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|+.|++++|.++.++.
T Consensus 163 ~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 163 NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred cCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 998 5666678999999999999999998878889999999999999998877777666667799999999999987653
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|++++..|..|..+++|+.|++++|++++..+
T Consensus 242 --~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 242 --LAVRHLVYLRFLNLSYNPISTIEGSMLH------ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp --HHHTTCTTCCEEECCSSCCCEECTTSCT------TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred --HHhcCccccCeeECCCCcCCccChhhcc------ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 4577888999999999888765554333 67788999999998888778888888999999999998887667
Q ss_pred cccCCCCCCcEEEccCCccc
Q 047549 373 GWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~ 392 (479)
..|..+++|++|++++|++.
T Consensus 314 ~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 314 SVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp GGBSCGGGCCEEECCSSCEE
T ss_pred hHcCCCcccCEEEccCCCcc
Confidence 77888888999999998887
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=283.68 Aligned_cols=323 Identities=16% Similarity=0.136 Sum_probs=174.9
Q ss_pred CCCCCCCCCcc-ceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCc
Q 047549 32 LNWSFSTDCCL-WEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHN 106 (479)
Q Consensus 32 ~~w~~~~~~c~-w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n 106 (479)
+.|..+.+||. |.+..|. ...+.+............-..++++++|+++++.++.+++.. ++|++|++++|
T Consensus 4 ~~~~~~~~C~~~~~~~~c~----~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n 79 (390)
T 3o6n_A 4 KPRQPEYKCIDSNLQYDCV----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79 (390)
T ss_dssp ---CCEECBCC------EE----EESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS
T ss_pred CCCCCccceehhhhhhccc----eeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCC
Confidence 46877777774 4444443 111122221111111122234678888888888887766542 67777777777
Q ss_pred ccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEcc
Q 047549 107 YFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLH 186 (479)
Q Consensus 107 ~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~ 186 (479)
.+.+ ..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++...+.. +..+++|++|+++
T Consensus 80 ~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~--------~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 80 QIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--------FHNTPKLTTLSMS 149 (390)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECC
T ss_pred cccc--cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH--------hcCCCCCcEEECC
Confidence 7763 23346777777777777777777666666777777777777777766333221 3556777777777
Q ss_pred CCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 187 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
+|.+++..+..+..+++|++|++++|.+++ + .+..+++|+++++++|.+++. ...++|++|++++|.+...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV 220 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE
T ss_pred CCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec
Confidence 777776666667777777777777776652 2 234566677777776665522 2234566666666666553
Q ss_pred ChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec
Q 047549 267 ISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ 346 (479)
Q Consensus 267 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 346 (479)
.. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|++++
T Consensus 221 ~~---~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~n~l~~- 286 (390)
T 3o6n_A 221 RG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPFV------KMQRLERLYISNNRLVA- 286 (390)
T ss_dssp EC---CCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGGT------TCSSCCEEECCSSCCCE-
T ss_pred cc---cccccccEEECCCCCCccc----HHHcCCCCccEEECCCCcCCCcChhHcc------ccccCCEEECCCCcCcc-
Confidence 22 1234566666666665533 2344445555555555544443332221 33444555555554442
Q ss_pred CchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 347 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++..+..+++|++|++++|++. .+|..+..+++|++|++++|+++
T Consensus 287 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 2333344444555555555444 23333444444555555554444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=283.12 Aligned_cols=342 Identities=20% Similarity=0.185 Sum_probs=239.1
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC-CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEc
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP-SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRA 129 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l 129 (479)
.+++++|+++++.+++. | .+..+++|++|++++|++++.+. ..++|++|++++|.+++ ++ ++.+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~---~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN---LD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC---CC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce---ee--cCCCCcCCEEEC
Confidence 45899999999999875 4 78999999999999999998742 23899999999999984 43 889999999999
Q ss_pred cccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeec
Q 047549 130 GFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNL 209 (479)
Q Consensus 130 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 209 (479)
++|.+++ ++ +..+++|++|++++|.+++. + +..+++|++|++++|...+.+ .+..+++|+.|++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~----------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D----------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C----------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c----------cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 9999985 44 88999999999999988863 1 567899999999999555444 4778899999999
Q ss_pred cCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCC
Q 047549 210 RINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 210 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
++|.+++ ++ +..+++|++|++++|.+++. .+..+++|++|++++|.+++ +| +..+++|++|++++|++++
T Consensus 178 s~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 9999984 44 67889999999999999854 37889999999999999988 44 7788999999999999987
Q ss_pred CCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcccc
Q 047549 290 ITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITG 369 (479)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 369 (479)
++ ...+++|+.|+++.|. |+.+++++|...+.+| +..+++|+.|++++|...+
T Consensus 248 ~~-----~~~l~~L~~L~l~~n~--------------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 248 LD-----VSTLSKLTTLHCIQTD--------------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CC-----CTTCTTCCEEECTTCC--------------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred cC-----HHHCCCCCEEeccCCC--------------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 64 3456666666654432 3333333333333332 2333444444444443322
Q ss_pred ccCc--------ccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccccccccccc
Q 047549 370 PIPG--------WLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLF 441 (479)
Q Consensus 370 ~~~~--------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~ 441 (479)
.+|. .+..+++|++|++++|++++. + +.+++.|+.+++++|...+ ...+..++++.|.+.
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFE 368 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEE
T ss_pred eeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEE
Confidence 2221 123334555555555555542 1 4555555555554443221 122333444444443
Q ss_pred CC-----CCeEEccCCcccccCChhhhc
Q 047549 442 SL-----PPAIYLRNNGLNGSIPIEIGN 464 (479)
Q Consensus 442 ~~-----~~~l~ls~n~l~~~~~~~~~~ 464 (479)
+. .+.+++++|+++|.+|..+..
T Consensus 369 g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 369 AEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ecceeeecCccccccCcEEEEcChhHhc
Confidence 21 134789999999999876544
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=278.97 Aligned_cols=319 Identities=24% Similarity=0.324 Sum_probs=269.6
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
..++++|++++|.+++..+ +..+++|++|++++|.+++.++ ..++|++|++++|.+++ ++. +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~---~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD---IDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC---ChH-HcCCCCCCEEE
Confidence 5689999999999987644 9999999999999999988764 33899999999999984 444 88999999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
+++|.+.+ ++ .+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 141 l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~----------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 205 (466)
T 1o6v_A 141 LSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK----------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLI 205 (466)
T ss_dssp EEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG----------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCccCC-Ch-hhccCCcccEeecC-CcccCch----------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEE
Confidence 99999984 44 48899999999996 3333221 156789999999999999854 3488999999999
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+.+ ++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 206 l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 206 ATNNQISD-IT--PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred ecCCcccc-cc--cccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence 99999974 33 266789999999999999853 467889999999999999988655 888999999999999998
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
.++. +..+++|+.|++++|.+.+..+ ...+++|++|++++|++++..| +..+++|++|++++|++.
T Consensus 279 ~~~~----~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 279 NISP----LAGLTALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CCGG----GTTCTTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cccc----ccCCCccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 7653 7789999999999999876543 1367899999999999997655 789999999999999998
Q ss_pred cccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccC
Q 047549 369 GPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 369 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 415 (479)
+. ..+..+++|++|++++|++++..| +..++.|+.++++++..
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 64 468899999999999999998777 88999999999987643
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=267.15 Aligned_cols=285 Identities=24% Similarity=0.356 Sum_probs=180.7
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+..+++|++|++++|.+++ ++. +..+++|++|++++|.++.. + . +..+++|++|++++|.+++..+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~-~-~--------~~~l~~L~~L~l~~n~i~~~~~-- 127 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI-S-A--------LQNLTNLRELYLNEDNISDISP-- 127 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-G-G--------GTTCTTCSEEECTTSCCCCCGG--
T ss_pred hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc-h-H--------HcCCCcCCEEECcCCcccCchh--
Confidence 4455555555555555552 222 55555666666655555431 1 1 3445666666666666654322
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 201 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence 5556666666666664432322 35566666666666666653322 5566666666666666655332 5566666
Q ss_pred CEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCC
Q 047549 278 SYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 357 (479)
+.+++++|.++..+. +..+++|+.|++++|.+.+..+ . ..+++|++|++++|.+++ + ..+..+++|
T Consensus 202 ~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~------~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 202 HYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--L------ANLSQLTWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp CEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--G------TTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred ceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--h------hcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence 777776666654432 5566667777777666654332 1 256778888888888774 3 457788888
Q ss_pred CEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccccccc
Q 047549 358 QVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY 437 (479)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 437 (479)
++|++++|++.+. ..+..+++|++|++++|++++..|..+.++++|+.
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~------------------------------ 315 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT------------------------------ 315 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE------------------------------
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE------------------------------
Confidence 8888888888753 35778888888888888888777788888877754
Q ss_pred ccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 438 NKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 438 n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
|++++|++++..| +..+++|+.|++++|+|+
T Consensus 316 ---------L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 ---------LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ---------EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ---------EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6788888885555 788888999999998875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=263.68 Aligned_cols=302 Identities=22% Similarity=0.310 Sum_probs=237.6
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
.+++++|+++++.++.. +.+..+++|++|++++|.+++.++ ..++|++|++++|.++. ++ .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~---~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD---IS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC---ch-HHcCCCcCCEEE
Confidence 35789999999988753 348889999999999999887754 33889999999998873 43 588899999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeee
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLN 208 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 208 (479)
+++|.+.+ ++. +..+++|++|++++|.....++. +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 117 l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~---------~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 117 LNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP---------LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp CTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG---------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CcCCcccC-chh-hccCCceeEEECCCCCCcccccc---------hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 99999884 444 78889999999998865543332 5678889999999998885543 77889999999
Q ss_pred ccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 209 LRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 209 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+. .++. +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 184 l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 184 LNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 9999887 4442 6788899999999998875433 7788899999999998887544 788889999999999887
Q ss_pred CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 289 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
.+ ..+..+++|+.|++++|.+.+. + . ...+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 257 ~~----~~~~~l~~L~~L~l~~n~l~~~-~-~------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 257 DI----NAVKDLTKLKMLNVGSNQISDI-S-V------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CC----GGGTTCTTCCEEECCSSCCCCC-G-G------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred CC----hhHhcCCCcCEEEccCCccCCC-h-h------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 65 3467788888888888877653 1 1 136778888888888888777788888888888888888888
Q ss_pred cccCcccCCCCCCcEEEccCCccc
Q 047549 369 GPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 369 ~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+..| +..+++|++|++++|.++
T Consensus 325 ~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG--GGGCTTCSEESSSCC---
T ss_pred cccC--hhhhhccceeehhhhccc
Confidence 6555 777888888888888875
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=271.56 Aligned_cols=343 Identities=16% Similarity=0.153 Sum_probs=269.9
Q ss_pred ccccccccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccC
Q 047549 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDV 142 (479)
Q Consensus 66 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 142 (479)
+..+..++.+++|++|++++|.+++.+ .+ ++|++|++++|.+++ +| ++.+++|++|++++|.+++ ++ +
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~---~~--~~~l~~L~~L~Ls~N~l~~-~~--~ 102 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT---LD--LSQNTNLTYLACDSNKLTN-LD--V 102 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC---CC--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred cccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe---Ec--cccCCCCCEEECcCCCCce-ee--c
Confidence 344557788999999999999999874 33 899999999999984 44 7889999999999999985 33 8
Q ss_pred CCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccc
Q 047549 143 SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYN 222 (479)
Q Consensus 143 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 222 (479)
..+++|++|++++|.+++. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~----------~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~ 165 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D----------VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---D 165 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C----------CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---C
T ss_pred CCCCcCCEEECCCCcCCee-c----------CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---c
Confidence 8899999999999988753 2 46788999999999999874 2778899999999999655454 4
Q ss_pred cCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCC
Q 047549 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKN 302 (479)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~ 302 (479)
+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++++ +..+++
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~ 234 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID-----VTPLTQ 234 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC-----CTTCTT
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC-----ccccCC
Confidence 6788999999999999985 44 78889999999999999875 3778899999999999998754 567888
Q ss_pred CcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCc
Q 047549 303 LRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLF 382 (479)
Q Consensus 303 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 382 (479)
|+.|++++|.+.+..+ ..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+
T Consensus 235 L~~L~l~~N~l~~~~~---------~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDV---------STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CSEEECCSSCCSCCCC---------TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred CCEEEeeCCcCCCcCH---------HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCC
Confidence 9999999998877432 25678888887665 46778899998877766 56789999
Q ss_pred EEEccCCcccccCCcc--------ccCCccccccccccccCCCCcccCcccccccccccccccccccCCCC--eEEccCC
Q 047549 383 YIDLSYNSISGEFPKE--------FCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP--AIYLRNN 452 (479)
Q Consensus 383 ~L~L~~N~l~~~~p~~--------~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~--~l~ls~n 452 (479)
+|++++|...+.+|.. ++++++|+.+++++|...+. .+....+|+.+++++|+++.++. .+++++|
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l----~l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n 365 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNN 365 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC----CCTTCTTCSEEECCSSCCCBCTTGGGSSGGGT
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc----ccccCCcCcEEECCCCCCCCccccccccccCC
Confidence 9999999887766642 44556666777766554432 24556677777888887776643 5677777
Q ss_pred cccccCChhhhcccccCeeeCCCCCCC
Q 047549 453 GLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 453 ~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++.|. +++..|..+++++|+|+
T Consensus 366 ~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 366 NFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp SEEEE-----EEEEECCCBCCBTTBEE
T ss_pred cEEec-----ceeeecCccccccCcEE
Confidence 77765 46678889999999874
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=286.05 Aligned_cols=395 Identities=20% Similarity=0.199 Sum_probs=262.8
Q ss_pred CccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCC
Q 047549 63 GLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSI 138 (479)
Q Consensus 63 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~ 138 (479)
+++ .+|..+. +++++|||++|+|+++++.. ++|++|+|++|.+++ ..|.+|.++++|++|++++|++++..
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCC
Confidence 444 4565553 47999999999999887643 899999999999984 23447899999999999999999666
Q ss_pred CccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc-cchhhhcCCCCCeeeccCCcCccc
Q 047549 139 PDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF-LPQFLMNCTNLITLNLRINNFRGD 217 (479)
Q Consensus 139 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 217 (479)
+..|.++++|++|++++|.+++..+.. |+++++|++|++++|.++.. .|..+..+++|++|++++|.+.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~--------~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~- 187 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS- 187 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCC--------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhh--------hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-
Confidence 678999999999999999998665543 67789999999999999764 57888999999999999999984
Q ss_pred cCccccCCCCC----CcEEEccCCcccccCCccCcCCCCCCEEEccCC--------------------------------
Q 047549 218 LSAYNFSTLHN----LHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGN-------------------------------- 261 (479)
Q Consensus 218 ~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-------------------------------- 261 (479)
++...+..+.+ ...++++.|.++...+.. .....+..+++.+|
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 43334443332 346777777765332222 12222233333332
Q ss_pred --------------------------------------------------cccccChhhhhccCCCCEEEccCCCCCCCC
Q 047549 262 --------------------------------------------------KIEEQISPTILALVSVSYLSINNNNLSNIT 291 (479)
Q Consensus 262 --------------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 291 (479)
.+... ..+.....++.|++.+|.+..++
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC
Confidence 11111 11222334444444444433221
Q ss_pred Ccc-----------------ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCC
Q 047549 292 GAI-----------------GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354 (479)
Q Consensus 292 ~~~-----------------~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 354 (479)
... .....+++|+.++++.|.+......... .....+|+.+++..+.... .+..+..+
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~----~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS----DFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH----HHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc----hhhhhhhhhhhcccccccc-cccccccc
Confidence 100 0111233344444444333221110000 0123344444444444432 23345566
Q ss_pred CCCCEEeCCCCcccccc-CcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccc
Q 047549 355 KKLQVLDLGSNQITGPI-PGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALY 433 (479)
Q Consensus 355 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 433 (479)
+.|+.+++++|...... +..+..+++++.+++++|.+.+..|..+..++.++.+++++|..........+....+|+.+
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEE
Confidence 77777777766665443 34567788888999999999888888888889999888877643332233456667888999
Q ss_pred ccccccccCCCC----------eEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 434 NQQYNKLFSLPP----------AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 434 ~l~~n~l~~~~~----------~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++++|+|+++++ .|++++|++++..|..|.++++|++||+++|+|+
T Consensus 500 ~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 999998876632 6999999999888899999999999999999985
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=274.36 Aligned_cols=300 Identities=23% Similarity=0.251 Sum_probs=205.0
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++++|+++++++++. |. -.++|++|++++|.+++++...++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 72 ~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~---l~~~---~~~L~~L~L~~n 141 (454)
T 1jl5_A 72 QAHELELNNLGLSSL-PE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA---LSDL---PPLLEYLGVSNN 141 (454)
T ss_dssp TCSEEECTTSCCSCC-CS---CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC---CCSC---CTTCCEEECCSS
T ss_pred CCCEEEecCCccccC-CC---CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc---ccCC---CCCCCEEECcCC
Confidence 457777777777653 32 1357777888777777765555777888888777763 3321 157788888888
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.+++ +| .+.++++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+..+++|+.|++++|
T Consensus 142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~-----------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL-----------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC-----------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 8774 66 47778888888888887764 3321 2477888888888775 44 4777888888888888
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
.+. .++. ..++|++|++++|.++ .+| .+..+++|++|++++|.+++. |. .+++|++|++++|++++++.
T Consensus 206 ~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 206 SLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp CCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCC
T ss_pred cCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCc
Confidence 776 3443 1357888888888777 566 377778888888888877763 32 23678888888888776553
Q ss_pred ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP 372 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 372 (479)
. .++|+.|++++|.+.+. +. ..++|++|++++|++++ ++. -.++|++|++++|++.+ +|
T Consensus 275 ~------~~~L~~L~ls~N~l~~l-~~---------~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 275 L------PQSLTFLDVSENIFSGL-SE---------LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp C------CTTCCEEECCSSCCSEE-SC---------CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CC
T ss_pred c------cCcCCEEECcCCccCcc-cC---------cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cc
Confidence 2 36788888888877652 11 22578888888888774 221 12478888888888875 45
Q ss_pred cccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCC
Q 047549 373 GWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGN 417 (479)
Q Consensus 373 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 417 (479)
.. +++|++|++++|+++ .+|. .+++|+.+++++|...+
T Consensus 334 ~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 334 AL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred cc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence 43 477888888888888 4555 46777777777765544
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=283.37 Aligned_cols=326 Identities=16% Similarity=0.143 Sum_probs=258.0
Q ss_pred CCCCCCCCCcc----ceeEEeC-----------------CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCC
Q 047549 32 LNWSFSTDCCL----WEGIKCD-----------------SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSF 90 (479)
Q Consensus 32 ~~w~~~~~~c~----w~~v~c~-----------------~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 90 (479)
..|.++.+||. |.++.|. ...+++.++++++.++...+..+..+++|++|++++|.+++
T Consensus 10 ~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~ 89 (597)
T 3oja_B 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89 (597)
T ss_dssp -CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE
T ss_pred cCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC
Confidence 56776666663 6555443 12467888888888877666667889999999999999988
Q ss_pred cCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccc
Q 047549 91 LSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGV 166 (479)
Q Consensus 91 ~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 166 (479)
.++.. ++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 166 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT- 166 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-
T ss_pred CChHHhcCCCCCCEEECCCCcCCC--CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-
Confidence 76532 789999999999885 44556789999999999999998555555788999999999999988776654
Q ss_pred cccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCcc
Q 047549 167 VNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLT 246 (479)
Q Consensus 167 ~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 246 (479)
+..+++|++|++++|.+++.. +..+++|+.|++++|.+. .+...+.|+.|++++|.+....+ .
T Consensus 167 -------~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~------~l~~~~~L~~L~ls~n~l~~~~~-~ 229 (597)
T 3oja_B 167 -------FQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSINVVRG-P 229 (597)
T ss_dssp -------TTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS------EEECCTTCSEEECCSSCCCEEEC-S
T ss_pred -------hhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc------cccCCchhheeeccCCccccccc-c
Confidence 566889999999999988652 566789999999999886 23456789999999999874432 2
Q ss_pred CcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccc
Q 047549 247 LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITIS 326 (479)
Q Consensus 247 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 326 (479)
..++|+.|++++|.+++. ..+..+++|+.|++++|.++++++ ..+..+++|+.|++++|.+.+. +...
T Consensus 230 --~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~----- 297 (597)
T 3oja_B 230 --VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQRLERLYISNNRLVAL-NLYG----- 297 (597)
T ss_dssp --CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES--GGGTTCSSCCEEECTTSCCCEE-ECSS-----
T ss_pred --cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH--HHhcCccCCCEEECCCCCCCCC-Cccc-----
Confidence 236899999999999873 678889999999999999986543 5677889999999999988774 2222
Q ss_pred ccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccccc
Q 047549 327 SYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 327 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. + +..+++|++|++++|++.+.
T Consensus 298 -~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 -QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred -ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 25789999999999998 6777888899999999999999854 3 66788999999999998754
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=280.86 Aligned_cols=275 Identities=16% Similarity=0.193 Sum_probs=136.2
Q ss_pred CCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 75 LTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 75 l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
+++++.+++++|.+..+++.. ++|++|++++|.+++ ..|..+..+++|++|++++|.+.+..|..|.++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC--CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 455666666666665554432 555555555555543 22334555555555555555555444444555555555
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
|++++|.+++..+.. |..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ ++ +..+++|+
T Consensus 128 L~L~~n~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~ 195 (597)
T 3oja_B 128 LVLERNDLSSLPRGI--------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLF 195 (597)
T ss_dssp EECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCS
T ss_pred EEeeCCCCCCCCHHH--------hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhh
Confidence 555555555332221 2344555555555555555444455555555555555555442 21 23344555
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~ 310 (479)
.|++++|.+++. ...++|+.|++++|.+ ..++... .++|+.|++++
T Consensus 196 ~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l------------------------~~~~~~~-----~~~L~~L~L~~ 241 (597)
T 3oja_B 196 HANVSYNLLSTL-----AIPIAVEELDASHNSI------------------------NVVRGPV-----NVELTILKLQH 241 (597)
T ss_dssp EEECCSSCCSEE-----ECCTTCSEEECCSSCC------------------------CEEECSC-----CSCCCEEECCS
T ss_pred hhhcccCccccc-----cCCchhheeeccCCcc------------------------ccccccc-----CCCCCEEECCC
Confidence 555555544321 2223444445544444 4332211 13444455544
Q ss_pred ccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 311 IFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 311 n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
|.+.+. ... ..+++|+.|++++|.+.+..|..|..+++|+.|+|++|.+.+ +|..+..+++|++|+|++|.
T Consensus 242 n~l~~~--~~l------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 242 NNLTDT--AWL------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp SCCCCC--GGG------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred CCCCCC--hhh------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 444431 000 134555555665555555555555556666666666665553 34444555566666666665
Q ss_pred ccccCCccccCCccccc
Q 047549 391 ISGEFPKEFCGLPALAL 407 (479)
Q Consensus 391 l~~~~p~~~~~l~~L~~ 407 (479)
++ .+|..+..++.|+.
T Consensus 313 l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 313 LL-HVERNQPQFDRLEN 328 (597)
T ss_dssp CC-CCGGGHHHHTTCSE
T ss_pred CC-ccCcccccCCCCCE
Confidence 55 34444444555544
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=262.40 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=217.9
Q ss_pred CCCCEEEcCCcccccCCCCCCc-CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSG-LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNI 174 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~ 174 (479)
+++++|++++|.++ .+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|.. +
T Consensus 45 ~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--------F 113 (390)
T ss_dssp CCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--------T
T ss_pred CCceEEEecCCchh---hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--------h
Confidence 67888888888877 46654 567888888888888887666667888888888888888877665553 4
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++. .+..+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccc
Confidence 56778888888888887555555677888888888888876 44444677778888888888877743 245667788
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCcc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~ 334 (479)
.+++++|.+++. ...++|+.|++++|.+..++. ...++|+.|++++|.+.+. ... ..+++|+
T Consensus 190 ~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~--~~l------~~l~~L~ 251 (390)
T 3o6n_A 190 HANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT--AWL------LNYPGLV 251 (390)
T ss_dssp EEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCCC--GGG------GGCTTCS
T ss_pred eeeccccccccc-----CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCccc--HHH------cCCCCcc
Confidence 888888777653 234577788888877775543 2246777777777776653 111 2566777
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccccc
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~ 414 (479)
+|++++|++++..|..+..+++|++|++++|++.+ +|..+..+++|++|++++|+++ .+|..+..++.|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~-------- 321 (390)
T 3o6n_A 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-------- 321 (390)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS--------
T ss_pred EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCC--------
Confidence 77777777776666777777777777777777763 4555566777777777777776 4454455555553
Q ss_pred CCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
.|++++|+++ .+| +..+++|+.|++++|+++
T Consensus 322 -------------------------------~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 322 -------------------------------NLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp -------------------------------EEECCSSCCC-CCC--CCTTCCCSEEECCSSCEE
T ss_pred -------------------------------EEECCCCccc-eeC--chhhccCCEEEcCCCCcc
Confidence 3788888887 344 678899999999999873
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-31 Score=249.71 Aligned_cols=295 Identities=19% Similarity=0.226 Sum_probs=198.2
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+++.++++++.+. .+|..+. +.+++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD--------FKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhh--------hccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 4555555555555 4444332 45666666666655443332 34556666666666666655566666677
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc--cChhhhhccCCCCEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE--QISPTILALVSVSYL 280 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 280 (479)
+|++|++++|.+. .++... .++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|
T Consensus 101 ~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 101 KLERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TCCEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCEEECCCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 7777777777665 454322 2577777777777775555566777777777777777753 456667777888888
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.++.++... .++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++|++|
T Consensus 177 ~l~~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 245 (330)
T 1xku_A 177 RIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLK------GLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245 (330)
T ss_dssp ECCSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGGGT------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred ECCCCccccCCccc-----cccCCEEECCCCcCCccCHHHhc------CCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence 88888877665422 26788888888877765444332 56788889998888887777788888899999
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKL 440 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l 440 (479)
++++|++. .+|..+..+++|++|++++|++++..+..|+....... ...+
T Consensus 246 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~-------------------~~~l---------- 295 (330)
T 1xku_A 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK-------------------KASY---------- 295 (330)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT-------------------SCCC----------
T ss_pred ECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc-------------------cccc----------
Confidence 99999888 67777888889999999999988776666654421100 0000
Q ss_pred cCCCCeEEccCCcccc--cCChhhhcccccCeeeCCCCC
Q 047549 441 FSLPPAIYLRNNGLNG--SIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 441 ~~~~~~l~ls~n~l~~--~~~~~~~~~~~L~~L~ls~N~ 477 (479)
..+++++|.+.. ..|..+..+.+++.+++++|+
T Consensus 296 ----~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 ----SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ----SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ----cceEeecCcccccccCccccccccceeEEEecccC
Confidence 247888888763 456788899999999999986
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=252.92 Aligned_cols=294 Identities=19% Similarity=0.212 Sum_probs=197.3
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+.. +..+++|++|++++|.+++..|..+..++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDD--------FKGLQHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhH--------hhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence 4566666666655 4454442 45666666666665544433 34566666667766666666666666677
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc--cChhhhhccCCCCEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE--QISPTILALVSVSYL 280 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 280 (479)
+|++|++++|.+. .++...+ ++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+ +|++|
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 7777777777665 4554222 667777777777765545556677777777777777743 445556555 77777
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.++.++... .++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++|++|
T Consensus 178 ~l~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~l~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 178 RISEAKLTGIPKDL-----PETLNELHLDHNKIQAIELEDLL------RYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp BCCSSBCSSCCSSS-----CSSCSCCBCCSSCCCCCCTTSST------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred ECcCCCCCccCccc-----cCCCCEEECCCCcCCccCHHHhc------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence 77777777665422 25777778877777765544333 56788888888888887777788888899999
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCcccccccccccccccccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKL 440 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l 440 (479)
++++|++. .+|..+..+++|++|++++|++++..+..|+....... ...+
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~-------------------~~~l---------- 296 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK-------------------RAYY---------- 296 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS-------------------SCCB----------
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc-------------------cccc----------
Confidence 99999888 67777888899999999999998777776665421100 0000
Q ss_pred cCCCCeEEccCCccc--ccCChhhhcccccCeeeCCCCC
Q 047549 441 FSLPPAIYLRNNGLN--GSIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 441 ~~~~~~l~ls~n~l~--~~~~~~~~~~~~L~~L~ls~N~ 477 (479)
..+++++|.+. +..|..+..+++|+.+++++|+
T Consensus 297 ----~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 297 ----NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ----SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ----cceEeecCcccccccCcccccccchhhhhhccccc
Confidence 23788888876 5677889999999999999885
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-30 Score=245.12 Aligned_cols=286 Identities=22% Similarity=0.271 Sum_probs=167.2
Q ss_pred CCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 78 LCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 78 L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
++.++++++.++.++... +.+++|++++|.+++ ..+..+.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCCCcCCE--eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 444444444444443332 455666666666553 22235677777788888777777666777777778888888777
Q ss_pred cccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc-ccCccccCCCCCCcEEEcc
Q 047549 157 QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~ 235 (479)
.++. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.. .+....+..+++|++|+++
T Consensus 111 ~l~~-l~~~~----------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 111 QLKE-LPEKM----------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCSB-CCSSC----------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred cCCc-cChhh----------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 7663 33221 2577788888887777666677777888888888777752 1233356677777777777
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++.++. ..+..+
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l--------------- 239 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANT--------------- 239 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--TTGGGS---------------
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh--hhccCC---------------
Confidence 77776 3444332 677777777777777666677777777777777776664432 123333
Q ss_pred cCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCC------CCCCcEEEccCC
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN------MPNLFYIDLSYN 389 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~N 389 (479)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++|
T Consensus 240 ---------------~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 240 ---------------PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp ---------------TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ---------------CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 34444444444444 34444444455555555555554333333322 244455555555
Q ss_pred cccc--cCCccccCCcccccccccc
Q 047549 390 SISG--EFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 390 ~l~~--~~p~~~~~l~~L~~l~~~~ 412 (479)
++.. ..|..|..+..++.+++++
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred cccccccCccccccccceeEEEecc
Confidence 5432 3334455555555554443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=256.69 Aligned_cols=266 Identities=18% Similarity=0.210 Sum_probs=187.4
Q ss_pred cccccChhhHHHHHHhHhcCCCCC----CCC----CCCCCCccceeEEeC---------CCCCEEEEECCCCCccccccc
Q 047549 8 LDQACNQIDQETLLSLNFNASNPP----LNW----SFSTDCCLWEGIKCD---------SEAQVTHLWLPDRGLRGSIYP 70 (479)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~----~~w----~~~~~~c~w~~v~c~---------~~~~l~~L~l~~~~l~~~~~~ 70 (479)
-+.+...+++.||.+||..+..+. ..| ....++|.|.|+.|. ..++++.|++++++++ .+|+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 344466689999999999875433 557 346789999999995 3478999999999998 6788
Q ss_pred cccCCCCCCeeecCCCcCCCcCCCC---CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCC---
Q 047549 71 FTGKLTHLCHLNLSHNHLSFLSPSV---PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSA--- 144 (479)
Q Consensus 71 ~l~~l~~L~~L~L~~n~l~~~~~~~---~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--- 144 (479)
.+..+++|++|++++|.++.++..+ ++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~ 175 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCcCCCEEECCCCCCccccChhHhhccc
Confidence 8888999999999999988554433 67778888887777 56777777777888888777766677766543
Q ss_pred ------CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcccc
Q 047549 145 ------AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDL 218 (479)
Q Consensus 145 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 218 (479)
+++|++|++++|.++ .+|.. +..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+
T Consensus 176 ~~~~~~l~~L~~L~L~~n~l~-~lp~~--------l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 176 SGEHQGLVNLQSLRLEWTGIR-SLPAS--------IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY 245 (328)
T ss_dssp CCCEEESTTCCEEEEEEECCC-CCCGG--------GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC
T ss_pred hhhhccCCCCCEEECcCCCcC-cchHh--------hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh
Confidence 667777777776666 44443 3445667777777776664 4445666677777777776666555
Q ss_pred CccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 219 SAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 219 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+.
T Consensus 246 p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 246 PP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred HH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 53 5666667777777776666666666666677777777776666666666666666666666655443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=246.65 Aligned_cols=287 Identities=21% Similarity=0.232 Sum_probs=170.0
Q ss_pred CCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCC
Q 047549 77 HLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
+++.++++++.++.++... +.|++|++++|.+++ ..|..+.++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc--cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 4566666666665554433 566666666666653 2344677777777777777777766667777777777777777
Q ss_pred CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc-ccCccccCCCCCCcEEEc
Q 047549 156 NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNFSTLHNLHTIDL 234 (479)
Q Consensus 156 n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l 234 (479)
|.++. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.. .+....+..+ +|++|++
T Consensus 112 n~l~~-l~~~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 112 NHLVE-IPPNL----------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SCCCS-CCSSC----------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CcCCc-cCccc----------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 77663 33221 1567777777777776555566777777777777777641 1222344445 6677777
Q ss_pred cCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcccc
Q 047549 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (479)
++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.++.++. ..+.
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~---------------- 238 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--GSLS---------------- 238 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGG----------------
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--hHhh----------------
Confidence 7776663 444332 566666666666666555556666666666666665554332 1122
Q ss_pred ccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCC------CCCCcEEEccC
Q 047549 315 EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGN------MPNLFYIDLSY 388 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~ 388 (479)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++
T Consensus 239 --------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 239 --------------FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp --------------GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred --------------CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 3445556666666555 45555666666666666666666444444433 24566666666
Q ss_pred Cccc--ccCCccccCCccccccccccc
Q 047549 389 NSIS--GEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 389 N~l~--~~~p~~~~~l~~L~~l~~~~~ 413 (479)
|++. +..|..|..++.|+.++++++
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CcccccccCcccccccchhhhhhcccc
Confidence 6665 445556666666666655543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=250.28 Aligned_cols=247 Identities=23% Similarity=0.315 Sum_probs=161.6
Q ss_pred CCCEEEccCCcCcc--ccchhhhcCCCCCeeeccC-CcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 179 NLKSLKLHTNSLSG--FLPQFLMNCTNLITLNLRI-NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 179 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|. .+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45555555555555 4555555566666666653 555544443 4555566666666666665555555566666666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCC-CCCCccccccCCC-CCcEEEccCccccccCCCCccccccccccCCc
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLS-NITGAIGILMGCK-NLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
|++++|.+++..|..+..+++|++|++++|.++ .++ ..+..++ .|+.|++++|.+.+.+|..+. .+. |
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~~L~~L~L~~N~l~~~~~~~~~------~l~-L 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---DSYGSFSKLFTSMTISRNRLTGKIPPTFA------NLN-L 199 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC---GGGGCCCTTCCEEECCSSEEEEECCGGGG------GCC-C
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC---HHHhhhhhcCcEEECcCCeeeccCChHHh------CCc-c
Confidence 666666665555555666666666666666554 222 2334444 666666666666655554433 233 8
Q ss_pred cEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 334 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
++|++++|++++..|..+..+++|+.|++++|++.+.+|. +..+++|++|++++|++++.+|..|..++.|+.
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~------ 272 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS------ 272 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE------
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE------
Confidence 8888888888877777788888888888888888755554 677788888888888888778887777777754
Q ss_pred cCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCC
Q 047549 414 ADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 414 ~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~ 477 (479)
|++++|+++|.+|.. .++++|+.|++++|+
T Consensus 273 ---------------------------------L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 273 ---------------------------------LNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---------------------------------EECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ---------------------------------EECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 677778888777776 778888888888876
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-33 Score=279.75 Aligned_cols=355 Identities=16% Similarity=0.102 Sum_probs=260.1
Q ss_pred CCEEEEECCCCCcccccccc-ccCCCCCCeeecCCCcCCCc--------CCCCCCCCEEEcCCcccccCCCCCCc-CCCC
Q 047549 52 AQVTHLWLPDRGLRGSIYPF-TGKLTHLCHLNLSHNHLSFL--------SPSVPFLSILDFSHNYFRGHCQLPSG-LGNF 121 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~--------~~~~~~L~~L~L~~n~l~~~~~l~~~-~~~l 121 (479)
+++++|++++++++...... +..+++|++|++++|.++.. ....++|++|++++|.+.+ ..+.. ...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD--VGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH--HHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh--HHHHHHHHHH
Confidence 46899999999987654443 67899999999999998743 1223899999999998864 11111 2233
Q ss_pred C----CCcEEEcccccccc----CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 122 S----KLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 122 ~----~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
+ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.... ....++|++|++++|.+++.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCBGG
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH---hcCCCcceEEECCCCCCCHH
Confidence 3 79999999999884 5578889999999999999998765444332210 23356899999999999864
Q ss_pred ----cchhhhcCCCCCeeeccCCcCccccCcccc-----CCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccC
Q 047549 194 ----LPQFLMNCTNLITLNLRINNFRGDLSAYNF-----STLHNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSG 260 (479)
Q Consensus 194 ----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~ 260 (479)
++..+..+++|++|++++|.+.+.... .+ ...++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVR-VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHH-HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHH-HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 356677789999999999998632111 22 2366999999999998853 466777889999999999
Q ss_pred CcccccChhh-----hhccCCCCEEEccCCCCCCCCC--ccccccCCCCCcEEEccCccccccCCCCccccccccccCCc
Q 047549 261 NKIEEQISPT-----ILALVSVSYLSINNNNLSNITG--AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 261 n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
|.++...... +..+++|++|++++|.++.... ....+..+++|+.|++++|.+.+..+....... ....++|
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~~L 315 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-LEPGCQL 315 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-TSTTCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-ccCCccc
Confidence 9987643222 2357899999999998875211 124466689999999999987654322111100 0123589
Q ss_pred cEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccccCcccC----C-CCCCcEEEccCCcccc----cCCcccc
Q 047549 334 VVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIPGWLG----N-MPNLFYIDLSYNSISG----EFPKEFC 400 (479)
Q Consensus 334 ~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~N~l~~----~~p~~~~ 400 (479)
++|++++|.+++. ++..+..+++|++|++++|++.+..+..+. . .++|++|++++|++++ .+|..+.
T Consensus 316 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 9999999999865 466778889999999999999865444333 2 6799999999999986 6777888
Q ss_pred CCccccccccccc
Q 047549 401 GLPALALQEAKNR 413 (479)
Q Consensus 401 ~l~~L~~l~~~~~ 413 (479)
.++.|+.+++++|
T Consensus 396 ~~~~L~~L~l~~N 408 (461)
T 1z7x_W 396 ANHSLRELDLSNN 408 (461)
T ss_dssp HCCCCCEEECCSS
T ss_pred hCCCccEEECCCC
Confidence 8888877555443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-33 Score=277.20 Aligned_cols=316 Identities=17% Similarity=0.132 Sum_probs=174.6
Q ss_pred CCCCeeecCCCcCCCcCC-----CCCCCCEEEcCCcccccC--CCCCCcCCCCCCCcEEEccccccccCCCccCC-CCC-
Q 047549 76 THLCHLNLSHNHLSFLSP-----SVPFLSILDFSHNYFRGH--CQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVS-AAA- 146 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~-----~~~~L~~L~L~~n~l~~~--~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~- 146 (479)
++|++|++++++++.... ..++|++|++++|.++.. ..++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 457778887777764421 226777777777776521 02344566677777777777776543332221 233
Q ss_pred ---CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc-----CCCCCeeeccCCcCcccc
Q 047549 147 ---SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN-----CTNLITLNLRINNFRGDL 218 (479)
Q Consensus 147 ---~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~ 218 (479)
+|++|++++|.++......+.. .+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSS----TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHH----HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCCceeEEEccCCCCCHHHHHHHHH----HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 5777777777666321111111 1445677777777777766443333322 346777777777665321
Q ss_pred C---ccccCCCCCCcEEEccCCcccccCCccCc-----CCCCCCEEEccCCccccc----ChhhhhccCCCCEEEccCCC
Q 047549 219 S---AYNFSTLHNLHTIDLGNNNFTGSFPLTLT-----SCMFLTAIRLSGNKIEEQ----ISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 219 ~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~ 286 (479)
. ...+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 0 12344566777777777776543322222 245677777777776653 34555666777777777776
Q ss_pred CCCCCC--cc-ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcC-----CCCCC
Q 047549 287 LSNITG--AI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGK-----LKKLQ 358 (479)
Q Consensus 287 l~~~~~--~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~ 358 (479)
+++... .. .....+++|+.|++++|.++......... ....+++|++|++++|.+++..+..+.. .++|+
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 653210 00 11124566777777776655421100000 0013566777777777665433322221 25677
Q ss_pred EEeCCCCccccc----cCcccCCCCCCcEEEccCCcccccCCc
Q 047549 359 VLDLGSNQITGP----IPGWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 359 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
+|++++|.+++. ++..+..+++|++|++++|++++..+.
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 777777776643 344555666777777777766654443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=236.98 Aligned_cols=282 Identities=18% Similarity=0.161 Sum_probs=191.0
Q ss_pred CCCCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCEE
Q 047549 74 KLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDI 151 (479)
Q Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 151 (479)
.|+.....+++++.++.++... ++|++|++++|.+++ ++. .+.++++|++|++++|.+++..+..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4455556788888888776654 577888888877763 333 67777777777777777776666667777777777
Q ss_pred ECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc-hhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 152 SLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP-QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 152 ~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
++++|.+++..+.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|...+.++...+..+++|+
T Consensus 106 ~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 106 DLSYNYLSNLSSSW--------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp ECCSSCCSSCCHHH--------HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ECCCCcCCcCCHhH--------hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 77777776433322 3456777777777777774433 35666777777777777422244444566677777
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK 310 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~ 310 (479)
+|++++|.+++..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.+.
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------------------ 239 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF------------------ 239 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC------------------
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc------------------
Confidence 77777777776666667777777777777777655444444556677777777776664331
Q ss_pred ccccccCCCCccccccccccCCccEEEeeCCccee----cCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEc
Q 047549 311 IFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKG----QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDL 386 (479)
Q Consensus 311 n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 386 (479)
..... ......++.++++++.+.+ .+|..+..+++|++|++++|+++...+..|..+++|++|++
T Consensus 240 --------~~l~~---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 240 --------SELST---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp --------C---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred --------ccccc---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 11000 0123467777887777765 36778899999999999999999544444689999999999
Q ss_pred cCCcccccC
Q 047549 387 SYNSISGEF 395 (479)
Q Consensus 387 ~~N~l~~~~ 395 (479)
++|++++..
T Consensus 309 ~~N~~~~~~ 317 (353)
T 2z80_A 309 HTNPWDCSC 317 (353)
T ss_dssp CSSCBCCCH
T ss_pred eCCCccCcC
Confidence 999988543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=249.81 Aligned_cols=288 Identities=19% Similarity=0.208 Sum_probs=177.9
Q ss_pred CCCCCCCCCccceeEEeC-------CCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcC
Q 047549 32 LNWSFSTDCCLWEGIKCD-------SEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFS 104 (479)
Q Consensus 32 ~~w~~~~~~c~w~~v~c~-------~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~ 104 (479)
..|..+.++|.|.+..|. ....++.|++++++++ .+|..+. ++|++|++++|.++.++...++|++|+++
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls 89 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPELRTLEVS 89 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCCCCTTCCEEEEC
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcC
Confidence 446667788998653221 1235889999999988 5676665 78999999999988877766888888888
Q ss_pred CcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEE
Q 047549 105 HNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLK 184 (479)
Q Consensus 105 ~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~ 184 (479)
+|.++ .+|. .+++|++|++++|.++ .+|. .+++|+.|++++|.++. +|.. +++|++|+
T Consensus 90 ~N~l~---~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~-----------l~~L~~L~ 147 (622)
T 3g06_A 90 GNQLT---SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL-----------PPGLQELS 147 (622)
T ss_dssp SCCCS---CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC-----------CTTCCEEE
T ss_pred CCcCC---cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC-----------CCCCCEEE
Confidence 88887 4665 5678888888888877 3444 45677888887777664 2221 36677777
Q ss_pred ccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccc
Q 047549 185 LHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIE 264 (479)
Q Consensus 185 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (479)
+++|.+++. |. .+++|+.|++++|.++ .++ ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++
T Consensus 148 Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 148 VSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT 214 (622)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc
Confidence 777777642 32 2356666777776665 344 235666666666666652 3321 345566666666555
Q ss_pred ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcce
Q 047549 265 EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK 344 (479)
Q Consensus 265 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 344 (479)
.. |. .+++|+.|++++|.++.++ . .+++|++|++++|+++
T Consensus 215 ~l-~~---~~~~L~~L~Ls~N~L~~lp------~------------------------------~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 215 SL-PA---LPSGLKELIVSGNRLTSLP------V------------------------------LPSELKELMVSGNRLT 254 (622)
T ss_dssp SC-CC---CCTTCCEEECCSSCCSCCC------C------------------------------CCTTCCEEECCSSCCS
T ss_pred cc-CC---CCCCCCEEEccCCccCcCC------C------------------------------CCCcCcEEECCCCCCC
Confidence 42 21 1245555555555555433 1 2345555555555555
Q ss_pred ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 345 GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 345 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
.+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 2333 3455666666666665 445555566666666666666665555544433
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=233.34 Aligned_cols=288 Identities=15% Similarity=0.166 Sum_probs=210.0
Q ss_pred CCCCCCCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcc
Q 047549 32 LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNY 107 (479)
Q Consensus 32 ~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~ 107 (479)
..|......|.|.++ | +.++++++ .+|..+. ++|++|++++|++++.++. .++|++|++++|.
T Consensus 21 ~~~~~~~~~C~~~~~-c---------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-C---------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp ------CCEECTTSE-E---------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cCCCccCCCCCCCeE-e---------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 445556777888765 4 45666776 4566554 5899999999999987663 3899999999999
Q ss_pred cccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccC
Q 047549 108 FRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHT 187 (479)
Q Consensus 108 l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~ 187 (479)
+++ ..|..+.++++|++|++++|.+++..+..+.++++|++|++++|.++...+.. .+..+++|++|++++
T Consensus 88 l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-------~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 88 INT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS-------LFSHLTKLQILRVGN 158 (353)
T ss_dssp CCE--ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC-------SCTTCTTCCEEEEEE
T ss_pred cCc--cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchh-------hhccCCCCcEEECCC
Confidence 985 44667999999999999999999544445899999999999999988543312 166789999999999
Q ss_pred C-cCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 188 N-SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 188 n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
| .++...+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++.
T Consensus 159 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred CccccccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 9 5776677889999999999999999985444 4788999999999999998743333345689999999999999886
Q ss_pred Chhhhh---ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 267 ISPTIL---ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 267 ~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.+..+. ....++.+++.++.+.+. .+. .+|... ..+++|++|++++|++
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~---------------------~l~-~l~~~l------~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDE---------------------SLF-QVMKLL------NQISGLLELEFSRNQL 289 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHH---------------------HHH-HHHHHH------HTCTTCCEEECCSSCC
T ss_pred cccccccccccchhhccccccccccCc---------------------chh-hhHHHH------hcccCCCEEECCCCCC
Confidence 544332 234455555554444311 000 011111 2567888888888888
Q ss_pred eecCchh-hcCCCCCCEEeCCCCcccccc
Q 047549 344 KGQIPTW-LGKLKKLQVLDLGSNQITGPI 371 (479)
Q Consensus 344 ~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 371 (479)
+ .+|.. |..+++|++|++++|++....
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8 44444 588889999999999887543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=229.41 Aligned_cols=286 Identities=19% Similarity=0.165 Sum_probs=196.3
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPS 116 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~ 116 (479)
|.|.++.|.. ++++ .+|..+ .++|++|++++|+++.+++.. ++|++|++++|.++.....+.
T Consensus 7 C~~~~l~c~~-----------~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 7 CSGTEIRCNS-----------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp EETTEEECCS-----------SCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred eCCCEEEcCC-----------CCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 6787777753 2333 233333 257777777777777665432 677788887777763212345
Q ss_pred cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+.. .+..+++|++|++++|.+++..+.
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS-------VFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTT-------TTTTCTTCCEEECTTSCCEECSTT
T ss_pred ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccch-------hhhhccCCCEEECCCCcCCccchh
Confidence 5566788888888888877 56666778888888888888877554311 155678888888888888877777
Q ss_pred hhhcCCCCCeeeccCCcCccc-cCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccC
Q 047549 197 FLMNCTNLITLNLRINNFRGD-LSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALV 275 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 275 (479)
.+..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 788888888888888888742 34 3677888888888888888877777888888888888888888887776778888
Q ss_pred CCCEEEccCCCCCCCCCccccccCC-CCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCC
Q 047549 276 SVSYLSINNNNLSNITGAIGILMGC-KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354 (479)
Q Consensus 276 ~L~~L~L~~n~l~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 354 (479)
+|++|++++|.+++... ..+..+ ++|+.|++++|.+.+........ ..+...+.+.+..+.+....|..+.+.
T Consensus 224 ~L~~L~L~~N~l~~~~~--~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~----~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQNDFACTCEHQSFL----QWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp TCCEEECTTSCCCBCSS--SSCCCCCTTCCEEECTTCCEECSGGGHHHH----HHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred cCCEeECCCCCCcccCH--HHHHhhhccCCEEEccCCCeecccChHHHH----HHHHhhhhhhccccccccCCchhhCCc
Confidence 88888888888875543 345555 48888888888877643211100 112233344445555555566666554
Q ss_pred C
Q 047549 355 K 355 (479)
Q Consensus 355 ~ 355 (479)
+
T Consensus 298 ~ 298 (306)
T 2z66_A 298 P 298 (306)
T ss_dssp B
T ss_pred e
Confidence 3
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=228.19 Aligned_cols=246 Identities=21% Similarity=0.182 Sum_probs=150.8
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL 204 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 204 (479)
+.++.++..++ .+|..+. ++++.|++++|.++...+.. |..+++|++|++++|.+++..+..|.++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNS--------FKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTT--------TSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHH--------hhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 34444444444 3443332 34555555555544433332 3344555555555555555445555555666
Q ss_pred CeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccC-CcccccChhhhhccCCCCEEEcc
Q 047549 205 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSG-NKIEEQISPTILALVSVSYLSIN 283 (479)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~ 283 (479)
++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++ +.+....+..|..+++|++|+++
T Consensus 115 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 115 NTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 66666666555 44433455566666666666666544444555666666666666 33433344456666666777777
Q ss_pred CCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCC
Q 047549 284 NNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLG 363 (479)
Q Consensus 284 ~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 363 (479)
+|.++.++. +..+++|+.|++++|.+.+..+..+. .+++|+.|++++|++++..+..|..+++|+.|+|+
T Consensus 194 ~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 194 MCNLREIPN----LTPLIKLDELDLSGNHLSAIRPGSFQ------GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp TSCCSSCCC----CTTCSSCCEEECTTSCCCEECTTTTT------TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred CCcCccccc----cCCCcccCEEECCCCccCccChhhhc------cCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 666665542 55666777777777776665554433 56778888888888887777778888888888888
Q ss_pred CCccccccCcccCCCCCCcEEEccCCccc
Q 047549 364 SNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 364 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
+|++++..+..|..+++|+.|+|++|++.
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888666677778888888888888765
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=224.51 Aligned_cols=197 Identities=20% Similarity=0.267 Sum_probs=87.5
Q ss_pred CeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccC--CCccCCCCCCCCEEECC
Q 047549 79 CHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGS--IPDDVSAAASLEDISLP 154 (479)
Q Consensus 79 ~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 154 (479)
+.++++++.++.++... ++|++|++++|.++ .+|. .+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45566666665555433 45555555555554 3333 244555555555555554411 12333344555555555
Q ss_pred CCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc-hhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEE
Q 047549 155 VNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP-QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTID 233 (479)
Q Consensus 155 ~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 233 (479)
+|.+... +.. +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 87 ~n~i~~l-~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 156 (306)
T 2z66_A 87 FNGVITM-SSN--------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLK 156 (306)
T ss_dssp SCSEEEE-EEE--------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEE
T ss_pred CCccccC-hhh--------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEE
Confidence 5544421 111 2234444555555444443322 234444444444444444432222 2344444444444
Q ss_pred ccCCcccc-cCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 234 LGNNNFTG-SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 234 l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 44444433 23344444444444444444444433334444444444444444433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=228.92 Aligned_cols=247 Identities=19% Similarity=0.189 Sum_probs=141.1
Q ss_pred CCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
.+.++.++..++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+.. |.++
T Consensus 56 ~~~v~c~~~~l~---~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLS---EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--------FNGL 122 (452)
T ss_dssp SCEEECCSSCCS---SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--------TTTC
T ss_pred CcEEEECCCCcC---ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh--------ccCc
Confidence 455666666665 4555443 46666677666666555666666666666666666665544433 3445
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCC-cccccCCccCcCCCCCCEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNN-NFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L 256 (479)
++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..+..+++|++|
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 66666666666666554455555666666666666555 444444555555555555553 2222222234444555555
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
++++|.+++ ++ .+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 202 ~L~~n~l~~------------------------~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~------~l~~L~~L 247 (452)
T 3zyi_A 202 NLGMCNIKD------------------------MP----NLTPLVGLEELEMSGNHFPEIRPGSFH------GLSSLKKL 247 (452)
T ss_dssp ECTTSCCSS------------------------CC----CCTTCTTCCEEECTTSCCSEECGGGGT------TCTTCCEE
T ss_pred ECCCCcccc------------------------cc----cccccccccEEECcCCcCcccCccccc------CccCCCEE
Confidence 555554443 32 133444555555555555443333222 45566777
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++.
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777766666666677777777777777776555566666777777777777654
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=218.27 Aligned_cols=223 Identities=20% Similarity=0.182 Sum_probs=107.9
Q ss_pred EEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccccc
Q 047549 55 THLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYL 134 (479)
Q Consensus 55 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~ 134 (479)
+.++.++.+++. +|..+ .++|++|++++|.+++.++ ..+..+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~----------------------~~~~~~~~L~~L~l~~n~l 68 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPA----------------------ASFRACRNLTILWLHSNVL 68 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECT----------------------TTTTTCTTCCEEECCSSCC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCH----------------------HHcccCCCCCEEECCCCcc
Confidence 455555555543 23322 3456666666665554433 2344445555555555555
Q ss_pred ccCCCccCCCCCCCCEEECCCCc-ccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc
Q 047549 135 SGSIPDDVSAAASLEDISLPVNQ-LSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN 213 (479)
Q Consensus 135 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 213 (479)
.+..+..+.++++|++|++++|. +....+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 69 ~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT--------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSCTTCCCCCTTT--------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeCHhhcCCccCCCEEeCCCCCCccccCHHH--------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc
Confidence 44444445555555555555554 33322222 2334455555555555554444445555555555555555
Q ss_pred CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCc
Q 047549 214 FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGA 293 (479)
Q Consensus 214 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 293 (479)
+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++++.
T Consensus 141 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 218 (285)
T 1ozn_A 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT- 218 (285)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-
T ss_pred cc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-
Confidence 54 3333334455555555555555553333344555555555555555555445555555555555555555543322
Q ss_pred cccccCCCCCcEEEccCccc
Q 047549 294 IGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 294 ~~~l~~~~~L~~L~l~~n~~ 313 (479)
..+..+++|+.|++++|.+
T Consensus 219 -~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 219 -EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -HHHTTCTTCCEEECCSSCE
T ss_pred -HHcccCcccCEEeccCCCc
Confidence 2233444444444444443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-26 Score=225.98 Aligned_cols=246 Identities=21% Similarity=0.202 Sum_probs=150.6
Q ss_pred CCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 78 LCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 78 L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
.+.++.++..++.++... +++++|++++|.+++ ..|..+.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce--ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 455666666666555444 466666666666654 33456667777777777777776666666677777777777777
Q ss_pred cccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccC
Q 047549 157 QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 236 (479)
.++...+.. +..+++|++|++++|.++...+..+..+++|++|++++|...+.++...+..+++|++|++++
T Consensus 134 ~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 134 WLTVIPSGA--------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CCSBCCTTT--------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCccChhh--------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 666444332 445667777777777776555556667777777777764433355555566677777777777
Q ss_pred CcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcccccc
Q 047549 237 NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEA 316 (479)
Q Consensus 237 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 316 (479)
|.+++ +| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++.++. ..+..+++|+.|++++|.+.+.
T Consensus 206 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 206 CNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER--NAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCSCC
T ss_pred Ccccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--HHhcCCCCCCEEECCCCcCCcc
Confidence 77663 33 35666677777777777776666667777777777777776664432 2344555555555555555433
Q ss_pred CCCCccccccccccCCccEEEeeCCcc
Q 047549 317 IPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.+..+. .+++|+.|++++|.+
T Consensus 282 ~~~~~~------~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 282 PHDLFT------PLRYLVELHLHHNPW 302 (452)
T ss_dssp CTTSST------TCTTCCEEECCSSCE
T ss_pred ChHHhc------cccCCCEEEccCCCc
Confidence 322221 344555555555544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=214.19 Aligned_cols=216 Identities=21% Similarity=0.209 Sum_probs=107.5
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
.+++|++|++++|.+++..+..+..+++|++|++++|. +. .++...+..+++|++|++++|.+++..+..+..+++|+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 34445555555555544444445555555555555554 33 33223455555555555555555544455555555566
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCcc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~ 334 (479)
+|++++|.+++..+..+..+++|++|++++|+++.++. ..+..+++|+.|++++|.+.+..+..+. .+++|+
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~ 204 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFR------DLGRLM 204 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTT------TCTTCC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhHcc------Cccccc
Confidence 66666655555444445555556666666555554332 1233344444444444444433333222 345666
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccC
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
+|++++|++++..+..+..+++|++|++++|.+...-+.. .....++.+..+.+.+....|+.+.+
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 6666666666544455666666666666666665321110 00112233334455555555555443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=227.95 Aligned_cols=255 Identities=18% Similarity=0.236 Sum_probs=155.5
Q ss_pred CCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECC
Q 047549 76 THLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLP 154 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 154 (479)
.++++|++++|.++.++... ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~---~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT---SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS---CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCC---CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 35778888888777655433 56666666666665 3444 3456666666666665 3443 44555556555
Q ss_pred CCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEc
Q 047549 155 VNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234 (479)
Q Consensus 155 ~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 234 (479)
+|.+++... .+++|+.|++++|+++. ++. .+++|++|++
T Consensus 110 ~N~l~~l~~------------~l~~L~~L~L~~N~l~~-------------------------lp~----~l~~L~~L~L 148 (622)
T 3g06_A 110 SNPLTHLPA------------LPSGLCKLWIFGNQLTS-------------------------LPV----LPPGLQELSV 148 (622)
T ss_dssp SCCCCCCCC------------CCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEEC
T ss_pred CCcCCCCCC------------CCCCcCEEECCCCCCCc-------------------------CCC----CCCCCCEEEC
Confidence 555543211 13445555555555543 322 1244445555
Q ss_pred cCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCcccc
Q 047549 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 235 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (479)
++|.+++ +|. .+++|+.|++++|.+++. | ..+++|+.|++++|.++.++. ..++|+.|++++|.+.
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc
Confidence 5544442 221 123455555555555442 2 234555566666655554432 1255666666666554
Q ss_pred ccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccccc
Q 047549 315 EAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
. ++. .+++|+.|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .
T Consensus 215 ~-l~~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~ 275 (622)
T 3g06_A 215 S-LPA---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-R 275 (622)
T ss_dssp S-CCC---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-S
T ss_pred c-cCC---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-c
Confidence 3 221 34689999999999985 55 45689999999999998 4555 5789999999999999 7
Q ss_pred CCccccCCcccccccccccc
Q 047549 395 FPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 395 ~p~~~~~l~~L~~l~~~~~~ 414 (479)
+|..+.++++|+.+++++|.
T Consensus 276 lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCGGGGGSCTTCEEECCSCC
T ss_pred CCHHHhhccccCEEEecCCC
Confidence 78889999999876665543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=217.36 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=148.7
Q ss_pred CCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 121 FSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.++ .+|..+..
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~--------~~~l~~L~~L~Ls~n~l~-~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT--------MQQFAGLETLTLARNPLR-ALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSC--------GGGGTTCSEEEEESCCCC-CCCGGGGG
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHH--------HhccCCCCEEECCCCccc-cCcHHHhc
Confidence 477889999999988 77888888888888888888887 55654 455778888888888888 56777888
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
+++|++|++++|.+.+.++. .+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 149 l~~L~~L~L~~n~~~~~~p~-~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPE-PLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCS-CSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCCCccccCh-hHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 88888888888776656654 2211 0 11122344566666666666665 345556666666666
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.++.++. .+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..+++|++|
T Consensus 212 ~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 212 KIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFG------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp EEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTT------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred EccCCCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhc------CCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 666666664432 234444455555544444444443322 44556666666665555556556666666666
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66666666566666666666666666554443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=221.40 Aligned_cols=241 Identities=20% Similarity=0.243 Sum_probs=156.8
Q ss_pred EEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCC----CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccc
Q 047549 56 HLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131 (479)
Q Consensus 56 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~ 131 (479)
.++.++.+++ .+|..+. ++++.|+|++|++++..+.. ++|++|++++|.+++ ..+..+..+++|++|++++
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE--ECGGGGTTCSSCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc--cChhhccCCccCCEEECCC
Confidence 4555555555 3455443 57788888888877665332 677777777777763 2334566777777777777
Q ss_pred cccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC-cCccccchhhhcCCCCCeeecc
Q 047549 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGFLPQFLMNCTNLITLNLR 210 (479)
Q Consensus 132 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~ 210 (479)
|+++...+..|..+++|++|++++|.++...+.. |..+++|++|++++| .+....+..+..+++|++|+++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--------~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT--------TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHH--------hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 7777444456677777777777777766444332 455677777777764 3443344456677777777777
Q ss_pred CCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCC
Q 047549 211 INNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI 290 (479)
Q Consensus 211 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (479)
+|.+. .++ .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++.+
T Consensus 194 ~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 194 MCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp TSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CCcCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 77776 454 356667777777777777766666677777777777777777776666677777777777777777655
Q ss_pred CCccccccCCCCCcEEEccCcccc
Q 047549 291 TGAIGILMGCKNLRMLLLCKIFFH 314 (479)
Q Consensus 291 ~~~~~~l~~~~~L~~L~l~~n~~~ 314 (479)
+. ..+..+++|+.|++++|.+.
T Consensus 271 ~~--~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PH--DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CT--TTTSSCTTCCEEECCSSCEE
T ss_pred Ch--hHhccccCCCEEEcCCCCcc
Confidence 53 33455666666666666554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-27 Score=224.24 Aligned_cols=257 Identities=19% Similarity=0.174 Sum_probs=169.2
Q ss_pred CCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
++..+++.+.+.. .+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+
T Consensus 12 l~i~~ls~~~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------LESL 79 (317)
T ss_dssp EEEESCCTTTHHH--HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----------ETTC
T ss_pred eeEeeccccchhh--hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----------hhhc
Confidence 3344555554432 122233455677888888887776656677777778888887777765432 3456
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++|++|++++|.+++.. ..++|+.|++++|.+.+ ++. ..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE-EEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCC-cCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 77777888777776432 23677777777777763 222 2356677777777777766566667777777777
Q ss_pred ccCCcccccChhhh-hccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 258 LSGNKIEEQISPTI-LALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 258 l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
+++|.+++..+..+ ..+++|++|++++|.++.++.. . .+++|++|
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~------------------------------~l~~L~~L 196 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----V------------------------------VFAKLKTL 196 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC----C------------------------------CCTTCCEE
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc----c------------------------------ccccCCEE
Confidence 77777776655555 3567777777777766544221 1 24567777
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc-ccCCccccCCccccccccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~~~ 411 (479)
++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ +..|..+..++.|+.+++.
T Consensus 197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 7777777743 334777777778888777777 45666777777888888887777 6666777777777766664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-27 Score=223.90 Aligned_cols=250 Identities=19% Similarity=0.168 Sum_probs=179.8
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc-cccCccccC-------CCCCCcEEEccCCcccccCCccC
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR-GDLSAYNFS-------TLHNLHTIDLGNNNFTGSFPLTL 247 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 247 (479)
..++|+++++++|.+ .+|..+... |+.|++++|.+. ..++. .+. .+++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 345677777777777 455555443 777777777774 23332 222 57788888888888877777765
Q ss_pred --cCCCCCCEEEccCCcccccChhhhhcc-----CCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCC
Q 047549 248 --TSCMFLTAIRLSGNKIEEQISPTILAL-----VSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDE 320 (479)
Q Consensus 248 --~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 320 (479)
..+++|++|++++|.+++. |..+..+ ++|++|++++|+++.++. ..+..+++|+.|++++|.+.+..+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC--EQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT--TTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH--HHhccCCCCCEEECCCCCcCcchHHH
Confidence 7778888888888888776 6666666 788888888888876553 45667788888888888765532100
Q ss_pred ccccccccccCCccEEEeeCCccee---cCchhhcCCCCCCEEeCCCCccccccC-cccCCCCCCcEEEccCCcccccCC
Q 047549 321 NQITISSYAFQNLVVLGIGNCEIKG---QIPTWLGKLKKLQVLDLGSNQITGPIP-GWLGNMPNLFYIDLSYNSISGEFP 396 (479)
Q Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p 396 (479)
. .+....+++|++|++++|++++ .....+..+++|++|++++|++.+..| ..+..+++|++|++++|+++ .+|
T Consensus 193 ~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 193 S--ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp H--HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred H--HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 0 0011256889999999998883 222445678999999999999987664 45667899999999999998 667
Q ss_pred ccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCC
Q 047549 397 KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLN 476 (479)
Q Consensus 397 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N 476 (479)
..+. ++|+. |++++|++++. |. +..+++|+.|++++|
T Consensus 270 ~~~~--~~L~~---------------------------------------L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 270 KGLP--AKLSV---------------------------------------LDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SSCC--SEEEE---------------------------------------EECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred hhcc--CCceE---------------------------------------EECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 6555 55543 78889999855 66 889999999999999
Q ss_pred CCC
Q 047549 477 NFS 479 (479)
Q Consensus 477 ~l~ 479 (479)
+|+
T Consensus 307 ~l~ 309 (312)
T 1wwl_A 307 PFL 309 (312)
T ss_dssp TTT
T ss_pred CCC
Confidence 985
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=203.44 Aligned_cols=218 Identities=20% Similarity=0.238 Sum_probs=130.2
Q ss_pred CCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCC
Q 047549 37 STDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPS 116 (479)
Q Consensus 37 ~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~ 116 (479)
+.++|.|.|+.|.-.++.+.+++++++++. +|..+. +++++|++++|++++.++ .
T Consensus 1 ~~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~----------------------~ 55 (270)
T 2o6q_A 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPS----------------------K 55 (270)
T ss_dssp CCCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCT----------------------T
T ss_pred CCccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCH----------------------H
Confidence 368999999998765667788888887774 454443 456666666666554332 2
Q ss_pred cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
.+.++++|++|++++|.++...+..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~ 127 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV--------FDQLVNLAELRLDRNQLKSLPPR 127 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT--------TTTCSSCCEEECCSSCCCCCCTT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH--------cccccCCCEEECCCCccCeeCHH
Confidence 4555666666666666665333334455666666666666655433322 34456666666666666655555
Q ss_pred hhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCC
Q 047549 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVS 276 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 276 (479)
.+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 128 ~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 128 VFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 5566666666666666665 344334555666666666666665444444555666666666666666554445555566
Q ss_pred CCEEEccCCCCC
Q 047549 277 VSYLSINNNNLS 288 (479)
Q Consensus 277 L~~L~L~~n~l~ 288 (479)
|+.|++++|.+.
T Consensus 207 L~~L~l~~N~~~ 218 (270)
T 2o6q_A 207 LKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEecCCCee
Confidence 666666665543
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-29 Score=255.31 Aligned_cols=401 Identities=15% Similarity=0.064 Sum_probs=260.7
Q ss_pred CCCEEEEECCCCCc---ccccccccc------------CCCCCCeeecCCCcCCCcCCC-----CCC-CCEEEcCCcccc
Q 047549 51 EAQVTHLWLPDRGL---RGSIYPFTG------------KLTHLCHLNLSHNHLSFLSPS-----VPF-LSILDFSHNYFR 109 (479)
Q Consensus 51 ~~~l~~L~l~~~~l---~~~~~~~l~------------~l~~L~~L~L~~n~l~~~~~~-----~~~-L~~L~L~~n~l~ 109 (479)
.+++++|+++++.- .+.+|..++ .+++|++|++++|.+++.... ++. |++|++++|...
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 67899999988642 133343333 789999999999987654322 234 999999998621
Q ss_pred cCCCCCCcCCCCCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEc
Q 047549 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKL 185 (479)
Q Consensus 110 ~~~~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L 185 (479)
....++....++++|++|++++|.+++. ++.....+++|++|++++|.+++.....+..+ +..+++|++|++
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~----~~~~~~L~~L~L 227 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI----ARNCRSLVSVKV 227 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH----HHHCTTCCEEEC
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH----HhhCCCCcEEec
Confidence 1112333345789999999999988755 22334568999999999998873322222221 346799999999
Q ss_pred cCCcCccccchhhhcCCCCCeeeccCCcCc---cccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCc
Q 047549 186 HTNSLSGFLPQFLMNCTNLITLNLRINNFR---GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNK 262 (479)
Q Consensus 186 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 262 (479)
++|.+.+ ++..+..+++|+.|+++..... +... ..+..+++|+.++++++... .+|..+..+++|++|++++|.
T Consensus 228 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 228 GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH-HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence 9999885 6788899999999999853322 1122 25667788999998876433 567777788899999999998
Q ss_pred ccccCh-hhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccC-----------ccccccCCCCcccccccccc
Q 047549 263 IEEQIS-PTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCK-----------IFFHEAIPDENQITISSYAF 330 (479)
Q Consensus 263 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~~~~ 330 (479)
+++... ..+..+++|+.|+++ +.+... ........+++|+.|++++ +.+++.... .....+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~-~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-----~l~~~~ 377 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETR-NVIGDR-GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-----ALAQGC 377 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEE-GGGHHH-HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-----HHHHHC
T ss_pred CCHHHHHHHHHhCcCCCEEecc-CccCHH-HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH-----HHHhhC
Confidence 765443 345788999999998 433321 1112335678899999983 333322111 011247
Q ss_pred CCccEEEeeCCcceecCchhhcC-CCCCCEEeCC----CCccccc-----cCcccCCCCCCcEEEccCCc--ccccCCcc
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGK-LKKLQVLDLG----SNQITGP-----IPGWLGNMPNLFYIDLSYNS--ISGEFPKE 398 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~L~~N~--l~~~~p~~ 398 (479)
++|++|+++.+++++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 88999999888888766666655 8889999886 5666643 33345668889999987543 55554444
Q ss_pred cc-CCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCccccc-CChhhhcccccCeeeCCCC
Q 047549 399 FC-GLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGS-IPIEIGNVMFLHVLDLSLN 476 (479)
Q Consensus 399 ~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~-~~~~~~~~~~L~~L~ls~N 476 (479)
+. .+++|+.++++++......-........+| ..|++++|.+++. ++..+..+++|+.|++++|
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L--------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL--------------QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC--------------CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCccc--------------CeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 43 367788777765532110000011112223 3466777776544 3334456777777777777
Q ss_pred CCC
Q 047549 477 NFS 479 (479)
Q Consensus 477 ~l~ 479 (479)
++|
T Consensus 524 ~it 526 (592)
T 3ogk_B 524 RAS 526 (592)
T ss_dssp BCC
T ss_pred cCC
Confidence 664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-27 Score=223.92 Aligned_cols=248 Identities=20% Similarity=0.214 Sum_probs=147.0
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccc-cCCCccCC-------CCCCCCEEECCCCcccccCCcccc
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLS-GSIPDDVS-------AAASLEDISLPVNQLSGAISNGVV 167 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~ 167 (479)
++|++|++++|.+ .+|..+... |++|++++|.+. ..++..+. ++++|++|++++|.+++..|..+.
T Consensus 43 ~~L~~l~l~~n~l----~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE----ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT----CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc----ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4677777777776 245544332 667777777763 34444443 567777777777777766665431
Q ss_pred ccCCCCCCCCCCCCEEEccCCcCccccchhhhcC-----CCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc
Q 047549 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNC-----TNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS 242 (479)
Q Consensus 168 ~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 242 (479)
+..+++|++|++++|.+++. |..+..+ ++|++|++++|.+. .++...+..+++|++|++++|++.+.
T Consensus 117 ------~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 117 ------EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp ------SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred ------HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcc
Confidence 24567777777777777755 5555555 66666666666665 33333556666666666666665433
Q ss_pred --CCccC--cCCCCCCEEEccCCccccc---ChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 243 --FPLTL--TSCMFLTAIRLSGNKIEEQ---ISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 243 --~~~~~--~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
.+..+ ..+++|++|++++|.+++. ....+..+++|++|++++|.+++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------- 242 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-------------------------- 242 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS--------------------------
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc--------------------------
Confidence 12222 4555666666666665521 11223344555555555555543
Q ss_pred cCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
..+.... ..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 243 ~~~~~~~-----~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 243 AAGAPSC-----DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSCC-----CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ccchhhh-----hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2221111 13456777777777776 5565554 6777888888877754 44 7777778888888887764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=224.47 Aligned_cols=237 Identities=20% Similarity=0.183 Sum_probs=164.6
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------l~~l~~L~~L~Ls~N~l~~l~~---- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------LESLSTLRTLDLNNNYVQELLV---- 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----------CTTCTTCCEEECCSSEEEEEEE----
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----------cccCCCCCEEEecCCcCCCCCC----
Confidence 34477777777777776666677777777777777777765443 3456777777777777774332
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh-ccCCCC
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL-ALVSVS 278 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 278 (479)
.++|+.|++++|.+.+ ++. ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+
T Consensus 98 -~~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 -GPSIETLHAANNNISR-VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp -CTTCCEEECCSSCCCC-EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred -CCCcCEEECcCCcCCC-CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2677777777777763 222 2356777777777777766666777777777778877777776666664 567777
Q ss_pred EEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 358 (479)
.|++++|.+++++. .. .+++|++|++++|++++..+ .+..+++|+
T Consensus 173 ~L~Ls~N~l~~~~~----~~------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 217 (487)
T 3oja_A 173 HLNLQYNFIYDVKG----QV------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT 217 (487)
T ss_dssp EEECTTSCCCEEEC----CC------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred EEecCCCccccccc----cc------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCcc
Confidence 77777777664422 11 24567777777777775433 477778888
Q ss_pred EEeCCCCccccccCcccCCCCCCcEEEccCCccc-ccCCccccCCccccccccc
Q 047549 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS-GEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~~~ 411 (479)
.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++.
T Consensus 218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88888888874 6666777888888888888877 5666777777777766653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=210.80 Aligned_cols=241 Identities=20% Similarity=0.123 Sum_probs=181.3
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. + .+..+++|++|++++|.+++. + ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~--~~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-L--DLESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-E--EETTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-h--hhhhcCCCCEEECcCCccccc-c----CCCCcC
Confidence 4567889999999998887778888899999999999988743 3 277888899999999888743 2 337888
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCcc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLV 334 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~ 334 (479)
+|++++|.+++..+. .+++|++|++++|.++.++. ..+..+++|+.|++++|.+.+..+.... ..+++|+
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~l~~L~ 172 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFAELA-----ASSDTLE 172 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSCCCEEEGGGGG-----GGTTTCC
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCCCCcccHHHHh-----hccCcCC
Confidence 999999888776544 35678888888888886643 3456678888888888887765443322 2457888
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccccc
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRA 414 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~ 414 (479)
+|++++|++++. +. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..++.|+.
T Consensus 173 ~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~------- 241 (317)
T 3o53_A 173 HLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH------- 241 (317)
T ss_dssp EEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE-------
T ss_pred EEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE-------
Confidence 888888888754 32 3347888888888888874 4445778888888888888888 45666777766653
Q ss_pred CCCCcccCcccccccccccccccccccCCCCeEEccCCccc-ccCChhhhcccccCeeeCCCC
Q 047549 415 DGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLN-GSIPIEIGNVMFLHVLDLSLN 476 (479)
Q Consensus 415 ~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~-~~~~~~~~~~~~L~~L~ls~N 476 (479)
|++++|++. +.+|..+..++.|+.|++++|
T Consensus 242 --------------------------------L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 242 --------------------------------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp --------------------------------EECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --------------------------------EEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 788888888 778888899988888887743
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-28 Score=247.06 Aligned_cols=408 Identities=15% Similarity=0.100 Sum_probs=273.7
Q ss_pred CccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCC---CcCC----------------CCCCCCE
Q 047549 40 CCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLS---FLSP----------------SVPFLSI 100 (479)
Q Consensus 40 ~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~----------------~~~~L~~ 100 (479)
|++|.++.+... ..+.+.++ .....+..+..+++|++|+++++... +..| ..++|++
T Consensus 41 ck~W~~~~~~~~---~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 116 (592)
T 3ogk_B 41 CRRWFKIDSETR---EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116 (592)
T ss_dssp CHHHHHHHHHHC---CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred hHHHHHhhhccc---cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence 447887754322 22333332 22334455678999999999875321 1111 2389999
Q ss_pred EEcCCcccccCCCCCCcCCC-CCC-CcEEEccccc-ccc-CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 101 LDFSHNYFRGHCQLPSGLGN-FSK-LQTFRAGFSY-LSG-SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 101 L~L~~n~l~~~~~l~~~~~~-l~~-L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
|++++|.+++ ..+..+.. +++ |++|++++|. +.. .++.....+++|++|++++|.+++.....+..+ ...
T Consensus 117 L~L~~~~i~~--~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~ 190 (592)
T 3ogk_B 117 VHFRRMIVSD--LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL----AQH 190 (592)
T ss_dssp EEEESCBCCH--HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH----HHH
T ss_pred EEeeccEecH--HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH----Hhc
Confidence 9999998764 23334444 445 9999999886 221 222233478999999999998875533222221 345
Q ss_pred CCCCCEEEccCCcCc----cccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccc---ccCCccCcC
Q 047549 177 LANLKSLKLHTNSLS----GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT---GSFPLTLTS 249 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~ 249 (479)
+++|++|++++|.++ +.++..+..+++|+.|++++|.+. .++ ..+..+++|++|+++..... ...+..+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 789999999999987 335556678999999999999987 455 36788999999999864332 234456778
Q ss_pred CCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccc
Q 047549 250 CMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA 329 (479)
Q Consensus 250 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 329 (479)
+++|+.++++++.. ...+..+..+++|++|++++|.++.. .....+..+++|+.|+++ +.+...... .....
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~-~~~~~~~l~-----~~~~~ 340 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEVLETR-NVIGDRGLE-----VLAQY 340 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHH-HHHHHHTTCTTCCEEEEE-GGGHHHHHH-----HHHHH
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHH-HHHHHHHhCcCCCEEecc-CccCHHHHH-----HHHHh
Confidence 89999999998644 34677788899999999999986532 111346789999999998 333321111 11125
Q ss_pred cCCccEEEeeC-----------Ccceec-CchhhcCCCCCCEEeCCCCccccccCcccCC-CCCCcEEEcc----CCccc
Q 047549 330 FQNLVVLGIGN-----------CEIKGQ-IPTWLGKLKKLQVLDLGSNQITGPIPGWLGN-MPNLFYIDLS----YNSIS 392 (479)
Q Consensus 330 ~~~L~~L~l~~-----------n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~ 392 (479)
+++|++|++++ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 78999999994 556543 3334566899999999999998766666655 8999999996 67787
Q ss_pred cc-----CCccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCccccc-CChhhhccc
Q 047549 393 GE-----FPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGS-IPIEIGNVM 466 (479)
Q Consensus 393 ~~-----~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~-~~~~~~~~~ 466 (479)
+. ++..+.++++|+.++++.+... . ....+. .+. ..++. ...|++++|++++. ++..+..++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~-l-~~~~~~------~~~---~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGG-L-TDLGLS------YIG---QYSPN-VRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGG-C-CHHHHH------HHH---HSCTT-CCEEEECSCCSSHHHHHHHHTCCT
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCC-c-cHHHHH------HHH---HhCcc-ceEeeccCCCCCHHHHHHHHhcCc
Confidence 53 3334667888988888532110 0 000000 000 00111 15688999998863 556668899
Q ss_pred ccCeeeCCCCCCC
Q 047549 467 FLHVLDLSLNNFS 479 (479)
Q Consensus 467 ~L~~L~ls~N~l~ 479 (479)
+|++|++++|+++
T Consensus 489 ~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 489 NLQKLEMRGCCFS 501 (592)
T ss_dssp TCCEEEEESCCCB
T ss_pred ccCeeeccCCCCc
Confidence 9999999999864
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=214.86 Aligned_cols=238 Identities=21% Similarity=0.131 Sum_probs=170.8
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 45688888888888887777888888888888888888874332 777888888888888887432 2277888
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
|++++|.+++..+. .+++|+.|++++|.++.+++ ..+..+++|+.|++++|.+.+..+..+. ..+++|++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~~l~~L~~ 173 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDTVNFAELA-----ASSDTLEH 173 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG--BCGGGGSSEEEEECTTSCCCEEEGGGGG-----GGTTTCCE
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc--hhhcCCCCCCEEECCCCCCCCcChHHHh-----hhCCcccE
Confidence 88888888776543 35678888888888876543 3456677788888888877765544332 14567788
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccC
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 415 (479)
|++++|.+++..+ ...+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..++.|+.
T Consensus 174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~-------- 241 (487)
T 3oja_A 174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEH-------- 241 (487)
T ss_dssp EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCE--------
T ss_pred EecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCE--------
Confidence 8888887775422 33577788888888887753 4447777778888888887774 5655666666543
Q ss_pred CCCcccCcccccccccccccccccccCCCCeEEccCCccc-ccCChhhhcccccCeeeCC
Q 047549 416 GNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLN-GSIPIEIGNVMFLHVLDLS 474 (479)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~-~~~~~~~~~~~~L~~L~ls 474 (479)
|++++|.+. +.+|..+..++.|+.++++
T Consensus 242 -------------------------------L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 -------------------------------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -------------------------------EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 677888877 6777888888888877764
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=189.67 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=74.6
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT--------TTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHH--------ccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 4555555555555444445555555555555555554433322 33455555666666555555445555555
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCCcccccChhhhhcc
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS-FPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 274 (479)
+|++|++++|.+. .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+
T Consensus 101 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred cccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 6666666655554 23323455555555555555555432 34555555555555555555555444444333
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-23 Score=189.82 Aligned_cols=201 Identities=23% Similarity=0.285 Sum_probs=106.7
Q ss_pred CCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEE
Q 047549 76 THLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDI 151 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 151 (479)
++|++|++++|++++.++. .++|++|++++|.+++ ..+..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc--cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4677777777777665442 2566666666666553 222345566666666666666655555556666666666
Q ss_pred ECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc-cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 152 SLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF-LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 152 ~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
++++|.+.+..+.. +..+++|++|++++|.+++. +|..+..+++|+.|++++|.+. .++...+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 106 VAVETNLASLENFP--------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176 (276)
T ss_dssp ECTTSCCCCSTTCC--------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCT
T ss_pred ECCCCCccccCchh--------cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhcc
Confidence 66666555433322 34455666666666665542 3555555666666666666555 23322333333333
Q ss_pred ----EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 231 ----TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 231 ----~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+|++++|.+++..+..+ ...+|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 55555555553322222 2234555555555555444444444555555555555443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=190.12 Aligned_cols=169 Identities=20% Similarity=0.205 Sum_probs=83.1
Q ss_pred hcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCC
Q 047549 199 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278 (479)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 278 (479)
..+++++.++++++.++ .+|. .+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34455555555555554 3442 11 24555555555555544444555555555555555555443221 3445555
Q ss_pred EEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 358 (479)
+|++++|.++.++. .+.. +++|++|++++|++++..+..|..+++|+
T Consensus 81 ~L~Ls~N~l~~l~~---~~~~------------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL---LGQT------------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp EEECCSSCCSSCCC---CTTT------------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred EEECCCCcCCcCch---hhcc------------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence 55555555544332 2233 44555555555555544444455555555
Q ss_pred EEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
+|++++|++.+..+..|..+++|++|++++|++++..+..|.++++|+
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 555555555544444445555555555555555543334444444443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=183.08 Aligned_cols=203 Identities=21% Similarity=0.236 Sum_probs=152.1
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
..++++++++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...+.. |..
T Consensus 17 ~~~~l~~~~~~l~---~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~--------~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLT---AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI--------FKE 83 (270)
T ss_dssp TTTEEECTTSCCS---SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT--------TSS
T ss_pred CCCEEEccCCCCC---ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh--------hcC
Confidence 4556666666665 4565443 57888888888888666667888899999999988887544332 466
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 788899999988888776777788888888888888887 4554567888888888888888886555567788888888
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
++++|.+++..+..|..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCCeeC
Confidence 888888888777777888888888888888876654 335556666666666665543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-26 Score=233.63 Aligned_cols=345 Identities=15% Similarity=0.105 Sum_probs=170.0
Q ss_pred CCCEEEEECCCCCccc---cccc------------cccCCCCCCeeecCCCcCCCcCC-----CCCCCCEEEcCCc-ccc
Q 047549 51 EAQVTHLWLPDRGLRG---SIYP------------FTGKLTHLCHLNLSHNHLSFLSP-----SVPFLSILDFSHN-YFR 109 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~---~~~~------------~l~~l~~L~~L~L~~n~l~~~~~-----~~~~L~~L~L~~n-~l~ 109 (479)
.+++++|+++++.... ..|. ....+++|++|++++|.+++... .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 3567777777764221 1111 12356788888888877664321 2478888888877 343
Q ss_pred cCCCCCCcCCCCCCCcEEEccccccccCCCccC----CCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEc
Q 047549 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDV----SAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKL 185 (479)
Q Consensus 110 ~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L 185 (479)
.. .++..+.++++|++|++++|.+++..+..+ ..+++|++|+++++. .......+..+ +..+++|++|++
T Consensus 145 ~~-~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l----~~~~~~L~~L~L 218 (594)
T 2p1m_B 145 TD-GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL----VTRCPNLKSLKL 218 (594)
T ss_dssp HH-HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH----HHHCTTCCEEEC
T ss_pred HH-HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH----HHhCCCCcEEec
Confidence 20 133344467888888888887665433333 356688888888775 11111111111 223577888888
Q ss_pred cCC-cCccccchhhhcCCCCCeeeccCCc-------CccccCccccCCCCCCcEE-EccCCcccccCCccCcCCCCCCEE
Q 047549 186 HTN-SLSGFLPQFLMNCTNLITLNLRINN-------FRGDLSAYNFSTLHNLHTI-DLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 186 ~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
++| .+++ ++..+..+++|+.|+++.+. +. .++. .+..+++|+.+ .+..... ..++..+..+++|++|
T Consensus 219 ~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 219 NRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTL 294 (594)
T ss_dssp CTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEE
T ss_pred CCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEE
Confidence 877 3343 66667777778887755442 11 1111 33445555555 2222111 1233333345566666
Q ss_pred EccCCcccccChh-hhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCc---------cccccCCCCcccccc
Q 047549 257 RLSGNKIEEQISP-TILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI---------FFHEAIPDENQITIS 326 (479)
Q Consensus 257 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n---------~~~~~~~~~~~~~~~ 326 (479)
++++|.++..... .+..+++|+.|++++| +.. .........+++|+.|++..+ .+++... ...
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-----~~l 367 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-----VSV 367 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-----HHH
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH-----HHH
Confidence 6666654432221 2345566666666655 221 000011223556666665321 1111000 000
Q ss_pred ccccCCccEEEeeCCcceecCchhhc-CCCCCCEEeCC--C----Cccccc-----cCcccCCCCCCcEEEccCCccccc
Q 047549 327 SYAFQNLVVLGIGNCEIKGQIPTWLG-KLKKLQVLDLG--S----NQITGP-----IPGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 327 ~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
...+++|++|.++.+++++.....+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 01245566665555555543333332 35566666665 2 333311 111234455666666654 44433
Q ss_pred CCccccC-Cccccccccccc
Q 047549 395 FPKEFCG-LPALALQEAKNR 413 (479)
Q Consensus 395 ~p~~~~~-l~~L~~l~~~~~ 413 (479)
.+..+.. +++|+.++++++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFA 466 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhchhccEeeccCC
Confidence 3333333 455555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=187.80 Aligned_cols=211 Identities=18% Similarity=0.179 Sum_probs=126.7
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++|+.|++++|.++.. ..+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34444444444444421 224444555555555554442 21 34445555555555555554444444555555555
Q ss_pred EccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVL 336 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L 336 (479)
++++|.+++..+..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+.+..+..+. .+++|++|
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L 186 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSLPEGVFD------KLTQLKDL 186 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTT------TCTTCCEE
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH--HHhccCccCCEEECCCCCcCccCHHHhc------CCccCCEE
Confidence 555555555444445555555555555555554332 2234455555555555555543332222 56788999
Q ss_pred EeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 337 GIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 337 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
++++|++++..+..+..+++|+.|++++|.+.+ .+++++.|+++.|.++|.+|.+++.+.....
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~~~ 250 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPDSA 250 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGGGS
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCCCC
Confidence 999999987777778899999999999998863 3567899999999999999999888776543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-23 Score=190.16 Aligned_cols=177 Identities=23% Similarity=0.271 Sum_probs=102.7
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.+. .+ ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+.. +.
T Consensus 41 ~~L~~L~l~~~~i~---~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~--------~~ 106 (272)
T 3rfs_A 41 NSIDQIIANNSDIK---SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV--------FD 106 (272)
T ss_dssp TTCCEEECTTSCCC---CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT--------TT
T ss_pred cceeeeeeCCCCcc---cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH--------hc
Confidence 55555566555554 22 235566666666666666653 2 24556666666666666665443332 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|+.
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 4566666666666666555555566666666666666665 343334555666666666666666444444555666666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 66666666665555555566666666665544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-22 Score=183.88 Aligned_cols=200 Identities=20% Similarity=0.194 Sum_probs=91.2
Q ss_pred ccCCCCCCeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCE
Q 047549 72 TGKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLED 150 (479)
Q Consensus 72 l~~l~~L~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 150 (479)
++.++++++++++++.++.+++.. +.+++|++++|.+++ ..+..+..+++|++|++++|.+++. +. ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSE--EEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCc--cCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCE
Confidence 455566666666666666554433 445555555555542 2233455555555555555555422 21 134455555
Q ss_pred EECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCc
Q 047549 151 ISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 151 L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 230 (479)
|++++|.++. +|.. +..+++|++|++++|++++..+..|..+++|++|++++|.+. .++...|..+++|+
T Consensus 82 L~Ls~N~l~~-l~~~--------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 82 LDLSHNQLQS-LPLL--------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151 (290)
T ss_dssp EECCSSCCSS-CCCC--------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred EECCCCcCCc-Cchh--------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCC
Confidence 5555554442 2221 233444455555555544444444444444444444444444 23333344444444
Q ss_pred EEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCC
Q 047549 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286 (479)
Q Consensus 231 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 286 (479)
.|++++|+++...+..+..+++|+.|++++|.++. +|..+....+|+.+++++|.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCC
Confidence 44444444442222233344444444444444442 22333333344444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-24 Score=208.60 Aligned_cols=255 Identities=20% Similarity=0.233 Sum_probs=139.6
Q ss_pred CCCCcCCCCCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCc---ccccCCccccccCCCCCCCCCCCCEEEc
Q 047549 113 QLPSGLGNFSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQ---LSGAISNGVVNLTSLNIGKLANLKSLKL 185 (479)
Q Consensus 113 ~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~l~~~~~~~L~~L~L 185 (479)
.++..+..+++|++|++++|.+... ++..+..+++|++|++++|. +.+.+|..+..+.. .+..+++|++|++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~-~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-ALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH-HHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH-HHhhCCcccEEEC
Confidence 4555666677777777777776643 23335667777777777653 33333433221110 1244566666677
Q ss_pred cCCcCcc----ccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCC---------CC
Q 047549 186 HTNSLSG----FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSC---------MF 252 (479)
Q Consensus 186 ~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------~~ 252 (479)
++|.++. .++..+..+++|++|++++|.+.+..+ ..+.. .+..+ ++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~--------------------~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-AKIAR--------------------ALQELAVNKKAKNAPP 160 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-HHHHH--------------------HHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-HHHHH--------------------HHHHHhhhhhcccCCC
Confidence 6666665 345556666666666666666542111 01111 11111 44
Q ss_pred CCEEEccCCccccc-Ch---hhhhccCCCCEEEccCCCCCC--CCCccc-cccCCCCCcEEEccCcccc----ccCCCCc
Q 047549 253 LTAIRLSGNKIEEQ-IS---PTILALVSVSYLSINNNNLSN--ITGAIG-ILMGCKNLRMLLLCKIFFH----EAIPDEN 321 (479)
Q Consensus 253 L~~L~l~~n~l~~~-~~---~~~~~l~~L~~L~L~~n~l~~--~~~~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~~ 321 (479)
|++|++++|.++.. .+ ..+..+++|+.|++++|.++. +..... .+..+++|+.|++++|.++ ..++...
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 55555555544311 12 233445555555555555441 111112 3445555555555555553 2222111
Q ss_pred cccccccccCCccEEEeeCCcceec----CchhhcC--CCCCCEEeCCCCcccc----ccCccc-CCCCCCcEEEccCCc
Q 047549 322 QITISSYAFQNLVVLGIGNCEIKGQ----IPTWLGK--LKKLQVLDLGSNQITG----PIPGWL-GNMPNLFYIDLSYNS 390 (479)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~--l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~L~~N~ 390 (479)
..+++|++|++++|++++. ++..+.. +++|++|+|++|.+.+ .+|..+ .++++|++|++++|+
T Consensus 241 ------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 241 ------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2456777888888777654 4555533 7888888888888876 366655 557888888888888
Q ss_pred ccccC
Q 047549 391 ISGEF 395 (479)
Q Consensus 391 l~~~~ 395 (479)
+++..
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 87555
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=199.78 Aligned_cols=232 Identities=18% Similarity=0.177 Sum_probs=144.6
Q ss_pred EEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc----hhhhcCC-CCCeeeccCCcCccccCccccC
Q 047549 150 DISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP----QFLMNCT-NLITLNLRINNFRGDLSAYNFS 224 (479)
Q Consensus 150 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~ 224 (479)
.+.++.|.+++.+|..+ ...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+ ..+.
T Consensus 2 ~~~ls~n~~~~~~~~~~--------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~ 72 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT--------SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELV 72 (362)
T ss_dssp EEECCCCTTCCHHHHHH--------TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHH
T ss_pred ccccccccchHHHHHHH--------hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHH
Confidence 35677777776666532 234558888888888886655 6667777 78888888888763322 2333
Q ss_pred CC-----CCCcEEEccCCcccccCCcc----CcCC-CCCCEEEccCCcccccChhhhhc-----cCCCCEEEccCCCCCC
Q 047549 225 TL-----HNLHTIDLGNNNFTGSFPLT----LTSC-MFLTAIRLSGNKIEEQISPTILA-----LVSVSYLSINNNNLSN 289 (479)
Q Consensus 225 ~l-----~~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~ 289 (479)
.+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+.. .++|++|++++|.+++
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 32 78888888888877555443 3333 67888888888887766655443 3578888888887764
Q ss_pred CCC--ccccccCCC-CCcEEEccCccccccCCCCcccccccccc-CCccEEEeeCCcceec----CchhhcC-CCCCCEE
Q 047549 290 ITG--AIGILMGCK-NLRMLLLCKIFFHEAIPDENQITISSYAF-QNLVVLGIGNCEIKGQ----IPTWLGK-LKKLQVL 360 (479)
Q Consensus 290 ~~~--~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L 360 (479)
... ....+...+ +|+.|++++|.+.+..+......+ ... ++|++|++++|++++. ++..+.. .++|++|
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL--ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 321 112233444 777777777777654432211100 122 4677777777777642 3444444 3477777
Q ss_pred eCCCCccccccC----cccCCCCCCcEEEccCCccc
Q 047549 361 DLGSNQITGPIP----GWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 361 ~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 392 (479)
++++|++.+..+ ..+..+++|++|++++|.+.
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 777777765322 33456677777777777754
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-24 Score=203.12 Aligned_cols=269 Identities=21% Similarity=0.260 Sum_probs=144.5
Q ss_pred CCCccceeEEeCCCCCEEEEECCCCCccccccccccCC--CCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCC
Q 047549 38 TDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKL--THLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLP 115 (479)
Q Consensus 38 ~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~ 115 (479)
.-|.+|.++.|+ ...++.++++++.+. +..+..+ ++++.|++++|.+.+..+.
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--------------------- 88 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--------------------- 88 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS---------------------
T ss_pred HHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh---------------------
Confidence 345579888775 445788999888766 3445555 6777777777776654433
Q ss_pred CcCCCCCCCcEEEccccccccC-CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC-cCccc
Q 047549 116 SGLGNFSKLQTFRAGFSYLSGS-IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGF 193 (479)
Q Consensus 116 ~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~ 193 (479)
+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+.. +..+++|++|++++| .+++.
T Consensus 89 --~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~--------l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 89 --HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT--------LAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp --CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH--------HTTCTTCSEEECTTCBSCCHH
T ss_pred --hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH--------HhcCCCCCEEECCCCCCCCHH
Confidence 23345555555555554432 4444445555555555555444333332 233455555555555 44432
Q ss_pred -cchhhhcCCCCCeeeccCC-cCccc-cCccccCCCC-CCcEEEccCC--ccc-ccCCccCcCCCCCCEEEccCCc-ccc
Q 047549 194 -LPQFLMNCTNLITLNLRIN-NFRGD-LSAYNFSTLH-NLHTIDLGNN--NFT-GSFPLTLTSCMFLTAIRLSGNK-IEE 265 (479)
Q Consensus 194 -~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~ 265 (479)
++..+..+++|++|++++| .+++. ++ ..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 3444555555666666555 54421 12 1344455 5666666665 232 2334444556666666666666 444
Q ss_pred cChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccccccc-CCccEEEeeCCcce
Q 047549 266 QISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAF-QNLVVLGIGNCEIK 344 (479)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~ 344 (479)
..+..+..+++|++|++++|. ...+..+..+..+++|+.|++++| + +..... .+ ..+..|++++|+++
T Consensus 238 ~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i----~~~~~~-----~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 238 DCFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVFGI-V----PDGTLQ-----LLKEALPHLQINCSHFT 306 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-S----CTTCHH-----HHHHHSTTSEESCCCSC
T ss_pred HHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-c----CHHHHH-----HHHhhCcceEEecccCc
Confidence 455556666666666666664 111122234556666777777666 2 111110 11 23555667777777
Q ss_pred ecCchhhcC
Q 047549 345 GQIPTWLGK 353 (479)
Q Consensus 345 ~~~~~~l~~ 353 (479)
+..|..++.
T Consensus 307 ~~~~~~~~~ 315 (336)
T 2ast_B 307 TIARPTIGN 315 (336)
T ss_dssp CTTCSSCSS
T ss_pred cccCCcccc
Confidence 766665553
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-23 Score=191.93 Aligned_cols=230 Identities=19% Similarity=0.215 Sum_probs=119.1
Q ss_pred CCcEEEccccccccCCCc---cCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc----
Q 047549 123 KLQTFRAGFSYLSGSIPD---DVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP---- 195 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~---- 195 (479)
.++.+.+..+.+...... .+..+++|++|++++|.+.+..|..+.. ..+++|++|++++|.+++..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE------ATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS------CCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh------ccCCCCCEEEeecccccchhhhhHH
Confidence 456666666554321000 0112344666666666666555543200 345566666666666654322
Q ss_pred hhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccccc--C--CccCcCCCCCCEEEccCCcccccCh--h
Q 047549 196 QFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGS--F--PLTLTSCMFLTAIRLSGNKIEEQIS--P 269 (479)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~--~ 269 (479)
..+..+++|++|++++|.+. .++...+..+++|++|++++|++.+. + +..+..+++|++|++++|.++.... .
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 22334555566666555554 23323455555555555555554321 1 1122344555555555555543111 1
Q ss_pred -hhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc
Q 047549 270 -TILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP 348 (479)
Q Consensus 270 -~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 348 (479)
.+..+++|++|++++|+++ +..|..... ...+++|++|++++|+++ .+|
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~--------------------------~~~p~~~~~---~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLR--------------------------ATVNPSAPR---CMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCC--------------------------CCCCSCCSS---CCCCTTCCCEECCSSCCC-SCC
T ss_pred HHHhcCCCCCEEECCCCCCC--------------------------ccchhhHHh---ccCcCcCCEEECCCCCCC-chh
Confidence 1234455555555555544 333322110 012356777777777777 455
Q ss_pred hhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 349 TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 349 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 5553 6788888888887743 33 5667788888888887763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=187.31 Aligned_cols=228 Identities=17% Similarity=0.162 Sum_probs=142.7
Q ss_pred CCCCEEEccCCcCccccch---hhhcCCCCCeeeccCCcCccccCcccc--CCCCCCcEEEccCCcccccCC----ccCc
Q 047549 178 ANLKSLKLHTNSLSGFLPQ---FLMNCTNLITLNLRINNFRGDLSAYNF--STLHNLHTIDLGNNNFTGSFP----LTLT 248 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~ 248 (479)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..+. .+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4567777777766532111 122345677777777777655554 33 666777777777777665433 2233
Q ss_pred CCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCcccccccc
Q 047549 249 SCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSY 328 (479)
Q Consensus 249 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 328 (479)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+... ..+... ..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~~~-----~~ 194 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-----------------------LMAALC-----PH 194 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-----------------------HHTTSC-----TT
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-----------------------hhHHHh-----hh
Confidence 45666666666666666555555566666666666665432100 000000 01
Q ss_pred ccCCccEEEeeCCcceecCch----hhcCCCCCCEEeCCCCccccccCcccCCC---CCCcEEEccCCcccccCCccccC
Q 047549 329 AFQNLVVLGIGNCEIKGQIPT----WLGKLKKLQVLDLGSNQITGPIPGWLGNM---PNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
.+++|++|++++|+++. ++. .+..+++|++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 45677777788887762 222 35677888999999998887767666665 68899999999888 5666543
Q ss_pred CccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCCC
Q 047549 402 LPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479 (479)
Q Consensus 402 l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l~ 479 (479)
++|+. |++++|++++ +|. +..+++|+.|++++|+|+
T Consensus 272 -~~L~~---------------------------------------L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 -AKLRV---------------------------------------LDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -SCCSC---------------------------------------EECCSCCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred -CCCCE---------------------------------------EECCCCcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence 34432 6788888884 343 677888999999999875
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-24 Score=221.85 Aligned_cols=344 Identities=16% Similarity=0.143 Sum_probs=204.2
Q ss_pred CCCEEEEECCCCCcccccccccc-CCCCCCeeecCCC-cCCCc-----CCCCCCCCEEEcCCcccccCC--CCCCcCCCC
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTG-KLTHLCHLNLSHN-HLSFL-----SPSVPFLSILDFSHNYFRGHC--QLPSGLGNF 121 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-----~~~~~~L~~L~L~~n~l~~~~--~l~~~~~~l 121 (479)
.+++++|+++++.+++..+..+. .+++|++|++++| .++.. ....++|++|++++|.+++.. .++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45899999999998887777775 6999999999998 44431 123489999999999976421 133344578
Q ss_pred CCCcEEEccccc--ccc-CCCccCCCCCCCCEEECCCC-cccccCCccccccCCCCCCCCCCCCEEEccCCc-------C
Q 047549 122 SKLQTFRAGFSY--LSG-SIPDDVSAAASLEDISLPVN-QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNS-------L 190 (479)
Q Consensus 122 ~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~-------l 190 (479)
++|++|+++++. +.. .++..+..+++|++|++++| .+.+ ++.. +..+++|++|++..+. +
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~--------~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATL--------LQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHH--------HHHCTTCSEEECSBCCCCCCHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHH--------HhcCCcceEcccccccCccchhhH
Confidence 899999999986 221 11122245799999999998 3333 3332 3456788888865543 2
Q ss_pred ccccchhhhcCCCCCee-eccCCcCccccCccccCCCCCCcEEEccCCcccccC-CccCcCCCCCCEEEccCCcccccC-
Q 047549 191 SGFLPQFLMNCTNLITL-NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSF-PLTLTSCMFLTAIRLSGNKIEEQI- 267 (479)
Q Consensus 191 ~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~- 267 (479)
.+ ++..+.++++|+.+ .+...... .++. .+..+++|++|++++|.+++.. +..+..+++|++|++++| +....
T Consensus 255 ~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 255 SG-LSVALSGCKELRCLSGFWDAVPA-YLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp HH-HHHHHHTCTTCCEEECCBTCCGG-GGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred HH-HHHHHhcCCCcccccCCcccchh-hHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 22 33456677777777 33332221 2221 2335677777777777765332 222456677777777776 33222
Q ss_pred hhhhhccCCCCEEEccC---------CCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEe
Q 047549 268 SPTILALVSVSYLSINN---------NNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGI 338 (479)
Q Consensus 268 ~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l 338 (479)
+.....+++|+.|++.+ +.++.. ........+++|+.|.+..+.+++....... ..+++|+.|++
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~-~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-----~~~~~L~~L~L 404 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYFCRQMTNAALITIA-----RNRPNMTRFRL 404 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH-HHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-----HHCTTCCEEEE
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHH-HHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-----hhCCCcceeEe
Confidence 22233467777777733 233211 0001112367777777766665543221111 13567777777
Q ss_pred e--C----Ccceec-----CchhhcCCCCCCEEeCCCCccccccCcccCC-CCCCcEEEccCCcccccCCccc-cCCccc
Q 047549 339 G--N----CEIKGQ-----IPTWLGKLKKLQVLDLGSNQITGPIPGWLGN-MPNLFYIDLSYNSISGEFPKEF-CGLPAL 405 (479)
Q Consensus 339 ~--~----n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L 405 (479)
+ + +.+++. ++..+..+++|+.|++++ .+.+..+..+.. +++|++|++++|.+++..+..+ .++++|
T Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 7 3 344421 122355667777777766 555443334443 6777777777777765544444 456666
Q ss_pred ccccccccc
Q 047549 406 ALQEAKNRA 414 (479)
Q Consensus 406 ~~l~~~~~~ 414 (479)
+.+++++|.
T Consensus 484 ~~L~L~~n~ 492 (594)
T 2p1m_B 484 RKLEIRDCP 492 (594)
T ss_dssp CEEEEESCS
T ss_pred CEEECcCCC
Confidence 666665544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-23 Score=202.58 Aligned_cols=227 Identities=16% Similarity=0.150 Sum_probs=145.1
Q ss_pred CCCCCCCCEEEccCCcCccccch----hhhcCCCCCeeeccCCcC---ccccCcc------ccCCCCCCcEEEccCCccc
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQ----FLMNCTNLITLNLRINNF---RGDLSAY------NFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l---~~~~~~~------~~~~l~~L~~L~l~~n~l~ 240 (479)
+..+++|++|++++|.++...+. .+..+++|++|++++|.+ .+.+|.. .+..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 34567888888888888765433 356788888888888643 3333321 1367788888888888887
Q ss_pred c----cCCccCcCCCCCCEEEccCCcccccChhhhh----cc---------CCCCEEEccCCCCCC--CCCccccccCCC
Q 047549 241 G----SFPLTLTSCMFLTAIRLSGNKIEEQISPTIL----AL---------VSVSYLSINNNNLSN--ITGAIGILMGCK 301 (479)
Q Consensus 241 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~l~~--~~~~~~~l~~~~ 301 (479)
+ .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++. ++.....+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 3566677788888888888887654433333 33 788888888887752 222223455667
Q ss_pred CCcEEEccCcccccc-----CCCCccccccccccCCccEEEeeCCcce----ecCchhhcCCCCCCEEeCCCCccccc--
Q 047549 302 NLRMLLLCKIFFHEA-----IPDENQITISSYAFQNLVVLGIGNCEIK----GQIPTWLGKLKKLQVLDLGSNQITGP-- 370 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~-- 370 (479)
+|+.|++++|.+... .+... ..+++|++|++++|.++ ..+|..+..+++|++|+|++|.+.+.
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGL------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTG------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHh------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 777777777766521 11011 24567777777777774 34566677777777777777777644
Q ss_pred --cCccc--CCCCCCcEEEccCCcccc----cCCccc-cCCcccc
Q 047549 371 --IPGWL--GNMPNLFYIDLSYNSISG----EFPKEF-CGLPALA 406 (479)
Q Consensus 371 --~~~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~ 406 (479)
++..+ ..+++|++|+|++|.+++ .+|..+ .+++.|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 34445 336777777777777775 355544 3455554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-23 Score=198.50 Aligned_cols=261 Identities=18% Similarity=0.184 Sum_probs=130.1
Q ss_pred EEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCC----ccCCCCC-CCCEEECCCCcccccCCccccccCCCCCC
Q 047549 101 LDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIP----DDVSAAA-SLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 101 L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
.++++|.+++ .+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +.
T Consensus 3 ~~ls~n~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~----l~ 76 (362)
T 3goz_A 3 YKLTLHPGSN--PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI----LA 76 (362)
T ss_dssp EECCCCTTCC--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH----HH
T ss_pred cccccccchH--HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH----Hh
Confidence 3455555543 333344444446666666666654443 4455555 56666666666655444433221 11
Q ss_pred CC-CCCCEEEccCCcCccccchhhhc----C-CCCCeeeccCCcCccccCccc----cCC-CCCCcEEEccCCcccccC-
Q 047549 176 KL-ANLKSLKLHTNSLSGFLPQFLMN----C-TNLITLNLRINNFRGDLSAYN----FST-LHNLHTIDLGNNNFTGSF- 243 (479)
Q Consensus 176 ~~-~~L~~L~L~~n~l~~~~~~~l~~----l-~~L~~L~l~~n~l~~~~~~~~----~~~-l~~L~~L~l~~n~l~~~~- 243 (479)
.. ++|++|++++|.+++..+..+.. + ++|++|++++|.+. ..+... +.. .++|++|++++|.+++..
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 11 56666666666666544443332 2 56666666666654 222111 222 245666666666555322
Q ss_pred ---CccCcCCC-CCCEEEccCCcccccChhhhhc----c-CCCCEEEccCCCCCCCCCc--cccccCCCCCcEEEccCcc
Q 047549 244 ---PLTLTSCM-FLTAIRLSGNKIEEQISPTILA----L-VSVSYLSINNNNLSNITGA--IGILMGCKNLRMLLLCKIF 312 (479)
Q Consensus 244 ---~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~----l-~~L~~L~L~~n~l~~~~~~--~~~l~~~~~L~~L~l~~n~ 312 (479)
+..+...+ +|++|++++|.+++..+..+.. + ++|+.|++++|.++..... ...+..
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~------------- 222 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS------------- 222 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-------------
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-------------
Confidence 22223333 5666666666665544433332 2 3555555555555431100 001111
Q ss_pred ccccCCCCccccccccccCCccEEEeeCCcceecCc----hhhcCCCCCCEEeCCCCccccc-------cCcccCCCCCC
Q 047549 313 FHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP----TWLGKLKKLQVLDLGSNQITGP-------IPGWLGNMPNL 381 (479)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L 381 (479)
..++|++|++++|++++..+ ..+..+++|++|++++|.+.+. ++..+..+++|
T Consensus 223 ----------------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 223 ----------------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286 (362)
T ss_dssp ----------------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE
T ss_pred ----------------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce
Confidence 12356666666666654322 2334556677777776663321 23345666777
Q ss_pred cEEEccCCcccccCCc
Q 047549 382 FYIDLSYNSISGEFPK 397 (479)
Q Consensus 382 ~~L~L~~N~l~~~~p~ 397 (479)
++||+++|++....+.
T Consensus 287 ~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 287 ILVDKNGKEIHPSHSI 302 (362)
T ss_dssp EEECTTSCBCCGGGCH
T ss_pred EEEecCCCcCCCcchH
Confidence 7777777777655443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=176.92 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=105.8
Q ss_pred CCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccc-cccCCCccCCCCCCCCEEECCC
Q 047549 77 HLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY-LSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
+|++|++++|+++++++ ..+..+++|++|++++|. ++...+..|.++++|++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~----------------------~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----------------------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TCCEEEEESCCCSEECT----------------------TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred cccEEEEeCCcceEECH----------------------HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 56666666666654433 244555556666666554 5433334455555666666655
Q ss_pred -CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC---eeeccCC-cCccccCccccCCCCCCc
Q 047549 156 -NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI---TLNLRIN-NFRGDLSAYNFSTLHNLH 230 (479)
Q Consensus 156 -n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~ 230 (479)
|.++...+.. |..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+. .++...|..+++|+
T Consensus 90 ~n~l~~i~~~~--------f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 90 TRNLTYIDPDA--------LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNET 158 (239)
T ss_dssp ETTCCEECTTS--------EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSE
T ss_pred CCCeeEcCHHH--------hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcce
Confidence 5555433332 3345556666666665554 333 55555555 6666666 554 44444455666666
Q ss_pred -EEEccCCcccccCCccCcCCCCCCEEEccCCc-ccccChhhhhcc-CCCCEEEccCCCCCCCCCccccccCCCCCcEEE
Q 047549 231 -TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNK-IEEQISPTILAL-VSVSYLSINNNNLSNITGAIGILMGCKNLRMLL 307 (479)
Q Consensus 231 -~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~ 307 (479)
+|++++|.++ .+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++.++.. .+++|+.|+
T Consensus 159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~~L~~L~ 232 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLEHLKELI 232 (239)
T ss_dssp EEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCTTCSEEE
T ss_pred eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----HhccCceee
Confidence 6666666665 333322222566666666663 665555556666 6666666666666655431 344555555
Q ss_pred ccC
Q 047549 308 LCK 310 (479)
Q Consensus 308 l~~ 310 (479)
+++
T Consensus 233 l~~ 235 (239)
T 2xwt_C 233 ARN 235 (239)
T ss_dssp CTT
T ss_pred ccC
Confidence 543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=169.80 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=123.6
Q ss_pred CCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCc
Q 047549 38 TDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSG 117 (479)
Q Consensus 38 ~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~ 117 (479)
.+|+.|.|..|.. ..+++++++++++. +|..+. +++++|++++|.+++. .+..
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~----------------------~~~~ 54 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATL----------------------SDAT 54 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCC----------------------CTTT
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCcc----------------------CHhH
Confidence 3577888888842 33466777766653 344332 3555555555554433 2335
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV--------FDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------TTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH--------hcccCCCCEEEcCCCcCCCcChhH
Confidence 667777777777777777666666777777777777777776544432 445677777777777777655555
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 127 ~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777777777777776 44444566677777777777777655555666677777777777776553
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=170.37 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=126.2
Q ss_pred CCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
.++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+++..+.. +..+
T Consensus 16 ~~~l~~~~~~l~---~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l 82 (251)
T 3m19_A 16 KKEVDCQGKSLD---SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--------FDDL 82 (251)
T ss_dssp GTEEECTTCCCS---SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------TTTC
T ss_pred CeEEecCCCCcc---ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH--------hccC
Confidence 445555666555 4565544 57888888888888766667788888888888888877655543 4557
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 77888888888887666667777778888888887776 45544567777777777777777755555677777777777
Q ss_pred ccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 258 LSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 258 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
+++|.+++..+..+..+++|+.|++++|.+.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777777766666667777777777777665
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=192.84 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=142.2
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCC--CCCcEEEccccccccCCCccCCCCCCCCEEECCCCccccc-CCccccccCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNF--SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA-ISNGVVNLTSLN 173 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~l~ 173 (479)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..
T Consensus 48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-------- 113 (336)
T 2ast_B 48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-------- 113 (336)
T ss_dssp TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH--------
T ss_pred hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH--------
Confidence 4677777777654 2334444 6677777777777654443 44567777777777665543 3322
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC-cCccc-cCccccCCCCCCcEEEccCC-ccccc-CCccCcC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN-NFRGD-LSAYNFSTLHNLHTIDLGNN-NFTGS-FPLTLTS 249 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~ 249 (479)
+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++ ..+..+++|++|++++| .+++. ++..+..
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 344566777777776666556666666666666666666 44421 22 13445566666666666 55532 3444455
Q ss_pred CC-CCCEEEccCC--ccc-ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccc
Q 047549 250 CM-FLTAIRLSGN--KIE-EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITI 325 (479)
Q Consensus 250 ~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 325 (479)
++ +|++|++++| .++ +..+..+..+++|+.|++++|.. +++..+...
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-------------------------l~~~~~~~l---- 243 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-------------------------LKNDCFQEF---- 243 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-------------------------CCGGGGGGG----
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-------------------------CCHHHHHHH----
Confidence 55 6666666665 233 22344445555555555555541 222211111
Q ss_pred cccccCCccEEEeeCCc-ceecCchhhcCCCCCCEEeCCCCccccccCcccCCC-CCCcEEEccCCcccccCCccccC
Q 047549 326 SSYAFQNLVVLGIGNCE-IKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM-PNLFYIDLSYNSISGEFPKEFCG 401 (479)
Q Consensus 326 ~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~ 401 (479)
..+++|++|++++|. +.......+..+++|+.|++++| +.+. .+..+ .++..|++++|++++..|..+..
T Consensus 244 --~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 244 --FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp --GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred --hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 134566666666663 32222234667778888888877 3321 22222 23556667888888777776654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=176.31 Aligned_cols=192 Identities=28% Similarity=0.400 Sum_probs=104.4
Q ss_pred CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcccc
Q 047549 144 AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223 (479)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 223 (479)
.+++|++|+++++.+... + . +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ .+
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~--------~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-G--------VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS--AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-T--------GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG--GG
T ss_pred HcCCcCEEEeeCCCccCc-h-h--------hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch--hh
Confidence 345566666665555431 1 1 3345555666666655554322 555555555555555554 222 34
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L 303 (479)
..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++++. +.
T Consensus 104 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~----- 170 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP----LA----- 170 (308)
T ss_dssp TTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GT-----
T ss_pred cCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh----hc-----
Confidence 455555555555555543 22 24455555555555555544322 4445555555555554443221 22
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
.+++|+.|++++|++++..+ +..+++|++|++++|++.+.. .+..+++|++
T Consensus 171 -------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 171 -------------------------NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp -------------------------TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred -------------------------CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCE
Confidence 45566666666666664322 666777777777777776443 2667777777
Q ss_pred EEccCCccc
Q 047549 384 IDLSYNSIS 392 (479)
Q Consensus 384 L~L~~N~l~ 392 (479)
|++++|+++
T Consensus 222 L~l~~N~i~ 230 (308)
T 1h6u_A 222 VTLTNQTIT 230 (308)
T ss_dssp EEEEEEEEE
T ss_pred EEccCCeee
Confidence 777777776
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=172.50 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=101.1
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-CccccCccccCCCCCCcEEEccC-CcccccCCccCcCCCCCCEE
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGN-NNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L 256 (479)
++++|++++|++++..+..+..+++|++|++++|. +. .++...|..+++|++|++++ |.+++..+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666666665555556666666666666664 44 44444555566666666665 55554444455555556666
Q ss_pred EccCCcccccChhhhhccCCCC---EEEccCC-CCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCC
Q 047549 257 RLSGNKIEEQISPTILALVSVS---YLSINNN-NLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQN 332 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 332 (479)
++++|.+++ +|. +..+++|+ +|++++| .++.++. ..+. .+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~------------------------------~l~~ 156 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--NAFQ------------------------------GLCN 156 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--TTTT------------------------------TTBS
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc--cccc------------------------------chhc
Confidence 666655554 222 44444444 5555555 4443332 1122 3455
Q ss_pred cc-EEEeeCCcceecCchhhcCCCCCCEEeCCCCc-cccccCcccCCC-CCCcEEEccCCcccccCCc
Q 047549 333 LV-VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQ-ITGPIPGWLGNM-PNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 333 L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~ 397 (479)
|+ +|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++++..+.
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 66 6666666666322333333 566666666664 664445556666 6667777776666643333
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=174.35 Aligned_cols=170 Identities=20% Similarity=0.318 Sum_probs=86.3
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++. + . +.
T Consensus 41 ~~L~~L~l~~~~i~---~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~--------~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGVT---TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-A--------IA 104 (308)
T ss_dssp HTCCEEECTTSCCC---CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-G--------GT
T ss_pred CCcCEEEeeCCCcc---Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-h--------hc
Confidence 34444444444443 233 34555566666666665552 222 55555666666665555432 1 1 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++. + .+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|+.
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~ 177 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTT 177 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCc--cccCCCCccEEEccCCcCCCC-hh-hcCCCCCCE
Confidence 455566666666655542 2 2555555666666555554 222 144555555555555555532 22 455555555
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI 290 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 290 (479)
|++++|.+++..+ +..+++|+.|++++|+++++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence 5555555554322 45555555555555555433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=189.03 Aligned_cols=207 Identities=23% Similarity=0.242 Sum_probs=167.9
Q ss_pred CCCCCCCCc-----cceeE-EeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCc
Q 047549 33 NWSFSTDCC-----LWEGI-KCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHN 106 (479)
Q Consensus 33 ~w~~~~~~c-----~w~~v-~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n 106 (479)
.|..+.++| .|.++ .|. .++++.|+++++++++ +|..+ +++|++|++++|.++.++...++|++|++++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLPELPASLEYLDACDN 110 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred HHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccccccCCCCEEEccCC
Confidence 455556667 68888 675 3579999999999987 67666 38999999999999987744489999999999
Q ss_pred ccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEcc
Q 047549 107 YFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLH 186 (479)
Q Consensus 107 ~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~ 186 (479)
.++ .+|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 111 ~l~---~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----------~l~~L~~L~Ls 168 (571)
T 3cvr_A 111 RLS---TLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----------LPTSLEVLSVR 168 (571)
T ss_dssp CCS---CCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----------CCTTCCEEECC
T ss_pred CCC---Ccch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----------cCCCcCEEECC
Confidence 998 4777 554 89999999999985 666 68899999999999886 343 25789999999
Q ss_pred CCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCC-------cEEEccCCcccccCCccCcCCCCCCEEEcc
Q 047549 187 TNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNL-------HTIDLGNNNFTGSFPLTLTSCMFLTAIRLS 259 (479)
Q Consensus 187 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 259 (479)
+|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 999997 555 55 89999999999998 6765 332 66 99999999998 678888889999999999
Q ss_pred CCcccccChhhhhccC
Q 047549 260 GNKIEEQISPTILALV 275 (479)
Q Consensus 260 ~n~l~~~~~~~~~~l~ 275 (479)
+|.+++..|..+..+.
T Consensus 239 ~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSSCCHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHhh
Confidence 9999988888877654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=176.80 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=113.2
Q ss_pred CCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCC-ccCCCCCCCCE-EECCCCcccccCCccccccCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIP-DDVSAAASLED-ISLPVNQLSGAISNGVVNLTSLN 173 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~l~ 173 (479)
++++|+|++|.++ .+|. +|.++++|++|++++|++.+.++ ..|.+++++++ +.+..|+++...+..
T Consensus 31 ~l~~L~Ls~N~i~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~-------- 99 (350)
T 4ay9_X 31 NAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-------- 99 (350)
T ss_dssp TCSEEEEESCCCS---EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS--------
T ss_pred CCCEEEccCCcCC---CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh--------
Confidence 3444455555444 3443 46677777777777777654444 34566666664 444456666554443
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccC-CcCccccCccccCCCC-CCcEEEccCCcccccCCccCcCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRI-NNFRGDLSAYNFSTLH-NLHTIDLGNNNFTGSFPLTLTSCM 251 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~ 251 (479)
|..+++|++|++++|.++...+..+....++..+++.+ +.+. .++...|..+. .++.|++++|.++ .++.......
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhcccc
Confidence 45567777777777777765555555556666677654 3443 45544555543 5777777777777 3444444556
Q ss_pred CCCEEEccC-CcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 252 FLTAIRLSG-NKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 252 ~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
+|+.+++++ |.++.+.+..|..+++|++|++++|+++.+|.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 677777764 56666555667777788888888877776654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-20 Score=175.75 Aligned_cols=201 Identities=17% Similarity=0.101 Sum_probs=112.5
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcE-EEccCCcccccCCccCcCCCCCCEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT-IDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++++|++++|+++...+.+|.++++|++|++++|.+.+.++...|.+++++.+ +.+..|+++...|..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 455666666666664444455666666666666666544455445555555544 3334455554445555555666666
Q ss_pred EccCCcccccChhhhhccCCCCEEEccC-CCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 257 RLSGNKIEEQISPTILALVSVSYLSINN-NNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 257 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
++++|.+....+..+....++..+++.+ +.+..++. ..+. .....++.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------------------------~~f~-----~~~~~l~~ 158 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--------------------------NSFV-----GLSFESVI 158 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT--------------------------TSST-----TSBSSCEE
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccc--------------------------cchh-----hcchhhhh
Confidence 6666655554444444444444555433 23332221 1111 11235677
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCC-CccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccc
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGS-NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEA 410 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~ 410 (479)
|++++|+++. ++.......+|+++++++ |.++...++.|..+++|++|++++|+++...+..|.+++.|+.+..
T Consensus 159 L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 159 LWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp EECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred hccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 7777777774 333333456677777764 5555444456777778888888888877555556677776665544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=155.02 Aligned_cols=182 Identities=23% Similarity=0.238 Sum_probs=99.3
Q ss_pred ccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCC
Q 047549 41 CLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGN 120 (479)
Q Consensus 41 c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~ 120 (479)
|.|.++.|... +++ .+|..+ .++|++|++++|++++.++ ..+..
T Consensus 7 C~~~~v~c~~~-----------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~----------------------~~~~~ 50 (208)
T 2o6s_A 7 CSGTTVECYSQ-----------GRT-SVPTGI--PAQTTYLDLETNSLKSLPN----------------------GVFDE 50 (208)
T ss_dssp EETTEEECCSS-----------CCS-SCCSCC--CTTCSEEECCSSCCCCCCT----------------------TTTTT
T ss_pred ECCCEEEecCC-----------Ccc-CCCCCC--CCCCcEEEcCCCccCcCCh----------------------hhhcc
Confidence 67888777532 222 223322 3466667776666654433 23445
Q ss_pred CCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 121 FSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
+++|++|++++|++++..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV--------FDKLTQLKELALNTNQLQSLPDGVFDK 122 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH--------hcCccCCCEEEcCCCcCcccCHhHhcc
Confidence 555666666666555433344455566666666666555333322 344556666666666666544444555
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhcc
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILAL 274 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 274 (479)
+++|+.|++++|.+. .++...+..+++|++|++++|.+.+ .+++|+.|+++.|.+++.+|..++.+
T Consensus 123 l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 666666666666665 3443345556666666666665442 23455666666666666665554433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=155.10 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=61.8
Q ss_pred EEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCC
Q 047549 126 TFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLI 205 (479)
Q Consensus 126 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 205 (479)
.++.+++.++ .+|..+ .++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..+..+++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGV--------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTT--------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhh--------hcccccCcEEECCCCccCccChhhcCCCCCcC
Confidence 4455555444 333322 234555555555544322221 23344455555555544433333344444444
Q ss_pred eeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCC
Q 047549 206 TLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNN 285 (479)
Q Consensus 206 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 285 (479)
+|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 80 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 80 YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 4444444444 233223344444444444444444333333334444444444444444333333333333333333333
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=177.85 Aligned_cols=134 Identities=22% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCC
Q 047549 147 SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL 226 (479)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 226 (479)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ ++. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l----------~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL----------PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC----------CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT-
T ss_pred CccEEEeCCCCCCc-cCHhH----------cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc-
Confidence 56666666666654 33321 245666666666666 334 334566666666666653 443 222
Q ss_pred CCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEE
Q 047549 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRML 306 (479)
Q Consensus 227 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L 306 (479)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.++.++. +. ++|+.|
T Consensus 121 -~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~----l~--~~L~~L 185 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE----LP--ESLEAL 185 (571)
T ss_dssp -TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CC--TTCCEE
T ss_pred -CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch----hh--CCCCEE
Confidence 56666666666653 443 44556666666666555 222 34555556665555554443 11 445555
Q ss_pred EccCcccc
Q 047549 307 LLCKIFFH 314 (479)
Q Consensus 307 ~l~~n~~~ 314 (479)
++++|.+.
T Consensus 186 ~Ls~N~L~ 193 (571)
T 3cvr_A 186 DVSTNLLE 193 (571)
T ss_dssp ECCSSCCS
T ss_pred ECcCCCCC
Confidence 55555444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=149.66 Aligned_cols=143 Identities=19% Similarity=0.193 Sum_probs=78.9
Q ss_pred CEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCc
Q 047549 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
+.+++++|.++.+ |..+ ...++.|++++|.++.++.. ..+..+++|+.|++++|.+.+..+..+. .+++|
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~------~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDIEEGAFE------GASGV 83 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCC-CCGGGCTTCCEEECCSSCCCEECTTTTT------TCTTC
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCch-hhhccCCCCCEEECCCCcCCEECHHHhC------CCCCC
Confidence 4677777777653 3332 23456777777776654211 2244555666666666655544333222 44555
Q ss_pred cEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 334 VVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 334 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
++|++++|++++..+..|..+++|++|++++|++.+..|..|..+++|++|++++|++++..|..|..+++|+
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 6666666655554455555555666666666665555555555555566666666665555555555555553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=147.09 Aligned_cols=163 Identities=23% Similarity=0.224 Sum_probs=92.0
Q ss_pred CCCCCCCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccC
Q 047549 32 LNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGH 111 (479)
Q Consensus 32 ~~w~~~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~ 111 (479)
..|..+...|.|.++.|.. ++++ .+|..+. ++|++|++++|.+++.
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-------------------- 55 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRS-----------KRHA-SVPAGIP--TNAQILYLHDNQITKL-------------------- 55 (229)
T ss_dssp -CCCCTTCEEETTEEECTT-----------SCCS-SCCSCCC--TTCSEEECCSSCCCCC--------------------
T ss_pred hccCCCCCEEeCCEeEccC-----------CCcC-ccCCCCC--CCCCEEEcCCCccCcc--------------------
Confidence 4444588899999998863 2232 3343332 4555555555555433
Q ss_pred CCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCc
Q 047549 112 CQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191 (479)
Q Consensus 112 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~ 191 (479)
.|..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+.. |..+++|++|++++|.++
T Consensus 56 --~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--------~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 56 --EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--------FDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp --CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCC
T ss_pred --CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH--------hCcchhhCeEeccCCccc
Confidence 2345666677777777777766444444566666666666666665443332 344566666666666666
Q ss_pred cccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCccc
Q 047549 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 192 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 240 (479)
.+|..+..+++|+.|++++|.+. .++...+..+++|++|++++|++.
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence 34555555666666666666555 333334445555555555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=157.11 Aligned_cols=171 Identities=22% Similarity=0.272 Sum_probs=95.7
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCE
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (479)
.+++|+.|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcc-cCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3444555555555444 232 24444555555555555543222 44555555555555555442 22455555555
Q ss_pred EEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCE
Q 047549 280 LSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQV 359 (479)
Q Consensus 280 L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 359 (479)
|++++|.++.+ ..+..+++|+.|++++|.+.+. ... ..+++|+.|++++|++++..+ +..+++|+.
T Consensus 117 L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l------~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 117 LSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--TVL------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGG------GGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc--hhh------ccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 55555555543 2244455555555555555442 111 245677777777777775433 777778888
Q ss_pred EeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 360 LDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 360 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 8888887774 33 37777788888888887774
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=156.90 Aligned_cols=168 Identities=21% Similarity=0.266 Sum_probs=85.0
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. +. +.
T Consensus 46 ~~L~~L~l~~~~i~---~~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~---------l~ 109 (291)
T 1h6t_A 46 NSIDQIIANNSDIK---SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL-SS---------LK 109 (291)
T ss_dssp HTCCEEECTTSCCC---CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG-GG---------GT
T ss_pred CcccEEEccCCCcc---cCh-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC-hh---------hc
Confidence 34445555555444 222 245556666666666666532 22 55566666666666655431 11 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++. ..+..+++|+.|++++|.+. .+ ..+..+++|++|++++|.+++..+ +..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-cc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 455566666666655532 23555555555555555554 22 134455555555555555543322 445555555
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 288 (479)
|++++|.+++. + .+..+++|+.|++++|.++
T Consensus 183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 55555555442 1 2444555555555555444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=146.69 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=57.8
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|++|++++|.+++..|..|..+++|++|++++|.+. .++...|..+++|++|++++|.+++..|..+..+++|+.
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 3444555555555555444445555555555555555554 344334455555555555555555444455555555555
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCC
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
|++++|.+++..+..|..+++|+.|++++|.+
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55555555554444455555555555555544
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.5e-18 Score=161.17 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=89.9
Q ss_pred CCEEEcCCcccccCCCCCCcCC-CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 98 LSILDFSHNYFRGHCQLPSGLG-NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 98 L~~L~L~~n~l~~~~~l~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
+++|+|++|.+++ ..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|.++...+.. |..
T Consensus 41 l~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~ 110 (361)
T 2xot_A 41 TALLDLSHNNLSR--LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL--------FSD 110 (361)
T ss_dssp CSEEECCSSCCCE--ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT--------TTT
T ss_pred CCEEECCCCCCCc--cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH--------hCC
Confidence 4444444444442 1122344 6667777777777776555556666777777777777666544332 445
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcccc---CCCCCCcEEEccCCcccccCCccCcCCCC-
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF---STLHNLHTIDLGNNNFTGSFPLTLTSCMF- 252 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~- 252 (479)
+++|++|++++|.++...+..|..+++|+.|++++|.+. .++...+ ..+++|+.|++++|.++...+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 666777777777766655666666667777777776665 4444333 34566666666666665333334444444
Q ss_pred -CCEEEccCCccc
Q 047549 253 -LTAIRLSGNKIE 264 (479)
Q Consensus 253 -L~~L~l~~n~l~ 264 (479)
++.|++++|++.
T Consensus 190 ~l~~l~l~~N~~~ 202 (361)
T 2xot_A 190 VKNGLYLHNNPLE 202 (361)
T ss_dssp HHTTEECCSSCEE
T ss_pred hcceEEecCCCcc
Confidence 355666666554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=146.52 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=77.3
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCC-ccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIP-DDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
+++++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+.. |..+
T Consensus 14 ~~l~~s~n~l~---~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------~~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLN---KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--------FEGA 80 (220)
T ss_dssp TEEECCSSCCS---SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT--------TTTC
T ss_pred CEeEeCCCCcc---cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH--------hCCC
Confidence 45666666665 3554432 234566666666554433 23455555555555555555443332 3344
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEE
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++|++|++++|.+++..+..|..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 555555555555555444445555555555555555542 2222444555555555555555544444455555555555
Q ss_pred ccCCccc
Q 047549 258 LSGNKIE 264 (479)
Q Consensus 258 l~~n~l~ 264 (479)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 5555444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=158.92 Aligned_cols=176 Identities=21% Similarity=0.196 Sum_probs=136.9
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCC-CCCCCCEEECCCCcccccCCccccccCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVS-AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKL 177 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~ 177 (479)
++++++++.++ .+|..+. +.++.|++++|.+++..+..+. ++++|++|++++|.+++..+.. |..+
T Consensus 21 ~~l~c~~~~l~---~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~--------~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLP---NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--------FVPV 87 (361)
T ss_dssp TEEECCSSCCS---SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT--------TTTC
T ss_pred CEEEeCCCCcC---ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh--------ccCC
Confidence 45566666665 5666543 4588999999999877677776 8899999999999988766554 5668
Q ss_pred CCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccC---cCCCCCC
Q 047549 178 ANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTL---TSCMFLT 254 (479)
Q Consensus 178 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~ 254 (479)
++|++|++++|.++...+..|..+++|+.|++++|.+. .++...|..+++|++|++++|.+++..+..+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 88999999999998777778888999999999999987 4544578888999999999999884333334 5688899
Q ss_pred EEEccCCcccccChhhhhccCC--CCEEEccCCCCC
Q 047549 255 AIRLSGNKIEEQISPTILALVS--VSYLSINNNNLS 288 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~ 288 (479)
.|++++|.++...+..+..++. ++.|++++|.+.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 9999999998877777777776 478888888775
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=168.67 Aligned_cols=171 Identities=23% Similarity=0.315 Sum_probs=87.7
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+++ ++ .+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 345556666666655532 2 3555666666666666555 2321 4555566666666665552 22 4555555666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccE
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVV 335 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~ 335 (479)
|++++|.+.+. +.+..+++|+.|+|++|.++.+ ..+..++ +|+.
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~------------------------------~L~~ 157 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLT------------------------------KLDT 157 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCT------------------------------TCSE
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccC------------------------------CCCE
Confidence 66666655542 2355555555555555555533 2234444 4555
Q ss_pred EEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccc
Q 047549 336 LGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISG 393 (479)
Q Consensus 336 L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 393 (479)
|++++|.+.+..| +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++++
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5555555543333 44555555555555555432 234455555555555555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-17 Score=144.86 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=70.2
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
+++.|++++|.+.+..+..|..+++|++|++++|.+++..|.. |..+++|++|++++|.++...+..|..++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~--------~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--------FQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT--------TTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH--------hhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 4444455554444333334444555555555555544443332 33345555555555555544444445555
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (479)
+|++|++++|.+. .++...|..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 105 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 105 SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 5555555555555 2332355556666666666666654444455666666666666666543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=168.65 Aligned_cols=151 Identities=24% Similarity=0.306 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+++. ..
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~---------~l~~l~~L~~L~Ls~N~l~~l--~~ 126 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S---------SLKDLKKLKSLSLEHNGISDI--NG 126 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T---------TSTTCTTCCEEECTTSCCCCC--GG
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h---------hhccCCCCCEEEecCCCCCCC--cc
Confidence 4444555555555554442221 44455555555555544431 1 033445555555555555432 23
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.+. .+ ..+..+++|+.|+|++|.+++..| +..+++|+.|++++|.+++. +.+..+++|
T Consensus 127 l~~l~~L~~L~Ls~N~l~-~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L 199 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKIT-DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 199 (605)
T ss_dssp GGGCTTCSEEECCSSCCC-CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTC
T ss_pred ccCCCccCEEECCCCccC-Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCC
Confidence 445555555555555554 22 134455555555555555553333 44555555555555555442 234455555
Q ss_pred CEEEccCCCCCC
Q 047549 278 SYLSINNNNLSN 289 (479)
Q Consensus 278 ~~L~L~~n~l~~ 289 (479)
+.|++++|.+..
T Consensus 200 ~~L~L~~N~l~~ 211 (605)
T 1m9s_A 200 DVLELFSQECLN 211 (605)
T ss_dssp SEEECCSEEEEC
T ss_pred CEEEccCCcCcC
Confidence 555555555543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=142.41 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=98.4
Q ss_pred CCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCC
Q 047549 97 FLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGK 176 (479)
Q Consensus 97 ~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~ 176 (479)
+.+.++.+++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++...+.. |..
T Consensus 20 s~~~v~c~~~~l~---~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~--------~~~ 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA---SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV--------FDS 86 (229)
T ss_dssp ETTEEECTTSCCS---SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTT
T ss_pred eCCEeEccCCCcC---ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh--------ccc
Confidence 3455555555555 4555443 67777777777777666667777777777777777765433332 455
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEE
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAI 256 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 256 (479)
+++|++|++++|.+++..+..+..+++|+.|++++|.+. .++. .+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 667777777777777655555666677777777777666 5553 45566666666666666664444455666666666
Q ss_pred EccCCcccc
Q 047549 257 RLSGNKIEE 265 (479)
Q Consensus 257 ~l~~n~l~~ 265 (479)
++++|.+..
T Consensus 165 ~l~~N~~~c 173 (229)
T 3e6j_A 165 YLFGNPWDC 173 (229)
T ss_dssp ECTTSCBCT
T ss_pred EeeCCCccC
Confidence 666666654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-17 Score=141.53 Aligned_cols=149 Identities=11% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
++|++|++++|.++ .+| .+..+++|++|++++|.+. . +..+..+++|++|++++|.+++..+.. +.
T Consensus 44 ~~L~~L~l~~n~i~---~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~--------l~ 109 (197)
T 4ezg_A 44 NSLTYITLANINVT---DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPN--------LS 109 (197)
T ss_dssp HTCCEEEEESSCCS---CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCC--------CT
T ss_pred CCccEEeccCCCcc---ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChh--------hc
Confidence 34444444444444 344 4555666666666666443 2 234555666666666666655443433 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCc-CccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINN-FRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
.+++|++|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence 45666666666666665555556666666666666665 33 333 34555555555555555543 22 344455555
Q ss_pred EEEccCCcc
Q 047549 255 AIRLSGNKI 263 (479)
Q Consensus 255 ~L~l~~n~l 263 (479)
.|++++|.+
T Consensus 185 ~L~l~~N~i 193 (197)
T 4ezg_A 185 QLYAFSQTI 193 (197)
T ss_dssp EEEECBC--
T ss_pred EEEeeCccc
Confidence 555555544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=151.21 Aligned_cols=150 Identities=29% Similarity=0.383 Sum_probs=83.2
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L 303 (479)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++++.. .. ++|
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~----~~-~~L 108 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI----PS-ACL 108 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC----CC-SSC
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc----cc-Ccc
Confidence 33444444444444444 222 34444555555555555544322 44555555555555555544321 11 555
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
+.|++++|.+.+. + .. ..+++|++|++++|++++. + .+..+++|+.|++++|++.+. ..+..+++|++
T Consensus 109 ~~L~L~~N~l~~~-~-~l------~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 109 SRLFLDNNELRDT-D-SL------IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp CEEECCSSCCSBS-G-GG------TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cEEEccCCccCCC-h-hh------cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 5555555555442 1 01 2456677777777777643 3 567777777777777777754 55677777777
Q ss_pred EEccCCccccc
Q 047549 384 IDLSYNSISGE 394 (479)
Q Consensus 384 L~L~~N~l~~~ 394 (479)
|++++|+++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 77777777744
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=137.71 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=90.9
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
..+++|++|++++|.++ .++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34567777888877777 334 5777788888888888664 332 567788888888888888776677788888888
Q ss_pred EEEccCCcccccChhhhhccCCCCEEEccCCC-CCCCCCccccccCCCCCcEEEccCccc
Q 047549 255 AIRLSGNKIEEQISPTILALVSVSYLSINNNN-LSNITGAIGILMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 255 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (479)
+|++++|.+++..+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCC
Confidence 88888888877777778888888888888886 65442 233444444444444433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-17 Score=147.75 Aligned_cols=168 Identities=23% Similarity=0.304 Sum_probs=101.9
Q ss_pred CCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEE
Q 047549 75 LTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDIS 152 (479)
Q Consensus 75 l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 152 (479)
+.++..++++.+.+++.+. .+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~---~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ---SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC---CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc---cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 4445556666666655441 1156666666666665 344 566677777777777777633 33 66677777777
Q ss_pred CCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEE
Q 047549 153 LPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTI 232 (479)
Q Consensus 153 l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 232 (479)
+++|.+++..+ +.. ++|++|++++|.+++. ..+..+++|+.|++++|.++ .++ .+..+++|++|
T Consensus 92 L~~N~l~~l~~----------~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L 155 (263)
T 1xeu_A 92 VNRNRLKNLNG----------IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVL 155 (263)
T ss_dssp CCSSCCSCCTT----------CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEE
T ss_pred CCCCccCCcCc----------ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEE
Confidence 77776664221 112 6677777777776643 24666667777777777665 333 45566666666
Q ss_pred EccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 233 DLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 233 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
++++|.+++. ..+..+++|+.|++++|.+...
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 6666666644 4456666666666666666553
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-18 Score=177.10 Aligned_cols=253 Identities=14% Similarity=0.129 Sum_probs=104.7
Q ss_pred cChhhHHHHHHhHhcCCCC----CCCCCC-CCCCccceeEEeCCCCCEEEEECCCCCccccccccccCCCCCCeee----
Q 047549 12 CNQIDQETLLSLNFNASNP----PLNWSF-STDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLN---- 82 (479)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~----~~~w~~-~~~~c~w~~v~c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~---- 82 (479)
..+.++.++.++..+.... ...|.. ....+.|.++.+.. ++++.|+|.++.+... +..+.....|+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDED 206 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcc-hhhHhhcCccCcccccCc
Confidence 4445667777777664322 245643 34456888777654 6799999988887653 33332222222222
Q ss_pred -cCCCcCCCcC---CCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcc
Q 047549 83 -LSHNHLSFLS---PSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQL 158 (479)
Q Consensus 83 -L~~n~l~~~~---~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (479)
++.|.+...+ ...+.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|.+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF---NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS---CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC---CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 2223222111 12267778888888776 56776667778888888888777 7777777778888888888877
Q ss_pred cccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCC-CCCcEEEccCC
Q 047549 159 SGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL-HNLHTIDLGNN 237 (479)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n 237 (479)
+ .+|.. +..+++|++|+|++|.++ .+|..|..+++|+.|++++|.+.+.++. .+..+ .....+++++|
T Consensus 283 ~-~lp~~--------~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 283 T-SLPAE--------LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp S-SCCSS--------GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH-HHHHHHHHHHHHHHHHC
T ss_pred C-ccChh--------hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH-HHhhcchhhhHHhhccC
Confidence 7 44554 345677788888888776 4566677777888888888877755443 22221 11223566777
Q ss_pred cccccCCccCcCCCCCCEEEccCC--------cccccChhhhhccCCCCEEEccCCCC
Q 047549 238 NFTGSFPLTLTSCMFLTAIRLSGN--------KIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 238 ~l~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
.+++.+|.. |+.|+++.| .+.+..+..+..+..+....+++|.+
T Consensus 352 ~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 352 RPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp CCCCCCCCC-----------------------------------------------CC
T ss_pred cccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 776666543 445555554 22332333334444555556666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-18 Score=174.20 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=88.8
Q ss_pred CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCC
Q 047549 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNL 381 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (479)
.|+.|++++|.+.+ +|. + ..+++|+.|++++|+++ .+|..++.+++|+.|+|++|++++ +| .+..+++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-L------EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-G------GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred CceEEEecCCCCCC-CcC-c------cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCC
Confidence 47777777777765 333 2 25678888888888887 677788888888888888888885 55 67888888
Q ss_pred cEEEccCCcccccC-CccccCCccccccccccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCCh
Q 047549 382 FYIDLSYNSISGEF-PKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPI 460 (479)
Q Consensus 382 ~~L~L~~N~l~~~~-p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~ 460 (479)
++|+|++|++++.. |..+.++++|+. |++++|++++..|.
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~---------------------------------------L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVL---------------------------------------LNLQGNSLCQEEGI 551 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCE---------------------------------------EECTTSGGGGSSSC
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCE---------------------------------------EEecCCcCCCCccH
Confidence 88888888888665 777877777754 67777777755442
Q ss_pred ---hhhcccccCeeeC
Q 047549 461 ---EIGNVMFLHVLDL 473 (479)
Q Consensus 461 ---~~~~~~~L~~L~l 473 (479)
.+..+++|+.||+
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2334778888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-18 Score=176.12 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=67.1
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEc
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSI 282 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 282 (479)
.|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 3555666666555 3442 555556666666666655 555555566666666666666655 33 4555666666666
Q ss_pred cCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEE
Q 047549 283 NNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337 (479)
Q Consensus 283 ~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~ 337 (479)
++|.+++++. ...+..+++|+.|++++|.+.+..+....+. ..+++|+.|+
T Consensus 516 s~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~---~~lp~L~~L~ 566 (567)
T 1dce_A 516 CNNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLA---EMLPSVSSIL 566 (567)
T ss_dssp CSSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHH---HHCTTCSEEE
T ss_pred CCCCCCCCCC-cHHHhcCCCCCEEEecCCcCCCCccHHHHHH---HHCcccCccC
Confidence 6666554420 1334555666666666666555444322110 1356666664
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=144.38 Aligned_cols=287 Identities=12% Similarity=0.079 Sum_probs=157.8
Q ss_pred CCCCcEEEccccccccCCCccCCC-CCCCCEEECCCCccc--ccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 121 FSKLQTFRAGFSYLSGSIPDDVSA-AASLEDISLPVNQLS--GAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+.+++.|.++++- .......+.. +++|++|+|++|++. ..... .++.++.+.+..+.+ ....
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~-----------~~~~~~~~~~~~~~I---~~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG-----------TYPNGKFYIYMANFV---PAYA 88 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS-----------SSGGGCCEEECTTEE---CTTT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc-----------ccccccccccccccc---CHHH
Confidence 4566777776541 1111112222 677888888888776 22111 122234444444422 2344
Q ss_pred hhc--------CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcc----cc
Q 047549 198 LMN--------CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKI----EE 265 (479)
Q Consensus 198 l~~--------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l----~~ 265 (479)
|.+ +++|+.+++.. .++ .++...|..+++|+.+++.+|.+....+..|..+.++..+....+.. ..
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred hcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccc
Confidence 555 78888888877 665 66666777888888888888777656666676666666665554221 11
Q ss_pred cChhhhhccCCCC-EEEccCCCCCCCCCcc-ccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcc
Q 047549 266 QISPTILALVSVS-YLSINNNNLSNITGAI-GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEI 343 (479)
Q Consensus 266 ~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 343 (479)
.....|..+..|+ .+.+.... .++... .......++..+.+.++-... ........+++|+.+++++|++
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~------~~~~l~~~~~~L~~l~L~~n~i 238 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNA------DFKLIRDYMPNLVSLDISKTNA 238 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHH------HHHHHHHHCTTCCEEECTTBCC
T ss_pred ccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHH------HHHHHHHhcCCCeEEECCCCCc
Confidence 2223344444444 33332211 111000 000112333334333221000 0000001255677777776666
Q ss_pred eecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCc-EEEccCCcccccCCccccCCccccccccccccCCCCcccC
Q 047549 344 KGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLF-YIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLP 422 (479)
Q Consensus 344 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 422 (479)
+...+..|.+|++|+.+++.+| +....+.+|..+++|+ .+++.+ .++.+.+.+|.+|++|+.
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~--------------- 301 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY--------------- 301 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE---------------
T ss_pred ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE---------------
Confidence 6555556666777777777666 5545556666777776 777766 565555666666666654
Q ss_pred cccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeC
Q 047549 423 LFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDL 473 (479)
Q Consensus 423 ~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~l 473 (479)
+++++|++....+..|.++++|+.++.
T Consensus 302 ------------------------l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 ------------------------VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------------------------EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ------------------------EEeCCCccCccchhhhcCCcchhhhcc
Confidence 677778888666778888999988864
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=127.95 Aligned_cols=91 Identities=24% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+..+++|++|++++|.+++..|..|.++++|++|++++|++++..+.. |..+++|++|++++|.+++..|..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM--------FLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS--------STTCTTCCEEECCSSCCCEECTTS
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH--------hcCCCCCCEEECCCCcCCeeCHHH
Confidence 555666666666666666555556666666666666666665544432 334555666666666666555555
Q ss_pred hhcCCCCCeeeccCCcCcc
Q 047549 198 LMNCTNLITLNLRINNFRG 216 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~ 216 (479)
+..+++|++|++++|.+.+
T Consensus 122 ~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp STTCTTCCEEECTTCCBCC
T ss_pred hhcCCCCCEEEeCCCCccC
Confidence 5555556666665555543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-15 Score=126.93 Aligned_cols=131 Identities=27% Similarity=0.404 Sum_probs=81.7
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL 204 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 204 (479)
++++++++.+. .+|..+.. ++++|++++|.+++..+... +..+++|++|++++|.+++..|..|..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGL-------FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCS-------GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccc-------cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 45555555554 44443332 55666666665554443321 3445666677777776666666666677777
Q ss_pred CeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccccc
Q 047549 205 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQ 266 (479)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 266 (479)
++|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 81 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77777777766 33333566677777777777777766676777777777777777777654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-15 Score=139.09 Aligned_cols=79 Identities=16% Similarity=0.061 Sum_probs=59.5
Q ss_pred ccCCccEEEeeCCcceecCchhhcCCCCCC-EEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 329 AFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ-VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
.+.+|+.+++.+| ++...+.+|.+|++|+ .+++.+ .++...+.+|..+++|+.++++.|+++...+.+|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 4566777777666 5555566788888888 888877 666566678888888888888888888777778888888876
Q ss_pred cc
Q 047549 408 QE 409 (479)
Q Consensus 408 l~ 409 (479)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 54
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=126.78 Aligned_cols=136 Identities=22% Similarity=0.202 Sum_probs=75.9
Q ss_pred CCCCEEEccCCccc-ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccc
Q 047549 251 MFLTAIRLSGNKIE-EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA 329 (479)
Q Consensus 251 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 329 (479)
++|+.|++++|.++ +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+.++... ..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLA------EK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHH------HH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHH------hh
Confidence 44555555555554 23344445555555555555555433 233444455555555554444322211 13
Q ss_pred cCCccEEEeeCCcceecC-chhhcCCCCCCEEeCCCCccccccC---cccCCCCCCcEEEccCCcccccCCc
Q 047549 330 FQNLVVLGIGNCEIKGQI-PTWLGKLKKLQVLDLGSNQITGPIP---GWLGNMPNLFYIDLSYNSISGEFPK 397 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~ 397 (479)
+++|++|++++|++++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. ..|+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 566777777777776432 2566777777777777777775444 36677777777777777766 3443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-16 Score=161.68 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=63.7
Q ss_pred hhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecC
Q 047549 268 SPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347 (479)
Q Consensus 268 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 347 (479)
+..+..+..|+.|+|++|.+..++. .+..+++|+.|+|++|.+. .+|..+. .+++|++|+|++|+++ .+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~---~~~~l~~L~~L~Ls~N~l~-~lp~~~~------~l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISA---NIFKYDFLTRLYLNGNSLT-ELPAEIK------NLSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCG---GGGGCCSCSCCBCTTSCCS-CCCGGGG------GGTTCCEEECTTSCCS-SC
T ss_pred hhhhccCCCCcEEECCCCCCCCCCh---hhcCCCCCCEEEeeCCcCc-ccChhhh------CCCCCCEEeCcCCcCC-cc
Confidence 3344444445555555554443332 1224445555555555444 3332221 4556666666666666 45
Q ss_pred chhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 348 PTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 348 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
|..|..+++|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 556666666666666666665 445556666666666666666666655555443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-15 Score=124.49 Aligned_cols=131 Identities=25% Similarity=0.211 Sum_probs=65.5
Q ss_pred CCCcEEEccccccc-cCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 122 SKLQTFRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 122 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S--------NLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S--------SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h--------hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 44555555555554 34444455555555555555554432 1 1344566666666666666545555555
Q ss_pred CCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcccccCC---ccCcCCCCCCEEEccCCcc
Q 047549 201 CTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFP---LTLTSCMFLTAIRLSGNKI 263 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l 263 (479)
+++|++|++++|.+. .++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 94 l~~L~~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 94 LPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CTTCCEEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 666666666666655 2221 234444555555555554442222 1333444444444444433
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=124.60 Aligned_cols=125 Identities=21% Similarity=0.225 Sum_probs=63.8
Q ss_pred eeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcc
Q 047549 80 HLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQL 158 (479)
Q Consensus 80 ~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 158 (479)
++++++++++.++... +.|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~---~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT---LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC---SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc---hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444444333222 34445555555544 4555556666666666666666644445555566666666665555
Q ss_pred cccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc
Q 047549 159 SGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR 215 (479)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 215 (479)
++..+.. |..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~--------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRT--------FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTT--------TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHH--------hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5444332 334455555555555555443344444555555555555443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-13 Score=129.50 Aligned_cols=215 Identities=15% Similarity=0.197 Sum_probs=121.1
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEc
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRL 258 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 258 (479)
+|+.+.+.. .++.....+|.+|++|+.+++..|.+. .++...|. ..+|+.+.+..+ ++..-..+|..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 456666554 444444455666666666666666555 45544444 356666666533 44344455566666666666
Q ss_pred cCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc----cCCCCccccccccccCCcc
Q 047549 259 SGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE----AIPDENQITISSYAFQNLV 334 (479)
Q Consensus 259 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~~~~~~L~ 334 (479)
..+ ++.+...+|.. .+|+.+.+. +.++.++. .+|..|++|+.+.+.++.... .++... ..++++|+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-----F~~c~~L~ 303 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-----LEGCPKLA 303 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTT-----TTTCTTCC
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHH-----hhCCccCC
Confidence 553 44444445554 456666663 33443332 445566666666665554331 011111 12556777
Q ss_pred EEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCc-ccccccc
Q 047549 335 VLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLP-ALALQEA 410 (479)
Q Consensus 335 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~~ 410 (479)
.+.+.+ .++..-..+|.+|++|+.++|..+ ++.....+|..+ +|+.+++++|.+....+..|.+++ .+..+.+
T Consensus 304 ~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 304 RFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp EECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred eEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 777763 355455567777788888877554 554556677777 788888887777766666677664 4444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=122.06 Aligned_cols=127 Identities=21% Similarity=0.300 Sum_probs=63.6
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLA 178 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~ 178 (479)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~---~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i-------------------- 66 (193)
T 2wfh_A 13 TVVRCSNKGLK---VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-------------------- 66 (193)
T ss_dssp TEEECTTSCCS---SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC--------------------
T ss_pred CEEEcCCCCCC---cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC--------------------
Confidence 35555555555 3444332 34555555555555 4444455555555555555544
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEc
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRL 258 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 258 (479)
++..+..|..+++|++|++++|.+. .++...|..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 67 ------------~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 67 ------------STLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp ------------CCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred ------------CEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence 4444444444555555555555544 233334455555555555555555333334555555666666
Q ss_pred cCCccc
Q 047549 259 SGNKIE 264 (479)
Q Consensus 259 ~~n~l~ 264 (479)
++|.+.
T Consensus 134 ~~N~~~ 139 (193)
T 2wfh_A 134 GANPLY 139 (193)
T ss_dssp CSSCEE
T ss_pred CCCCee
Confidence 666554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=120.06 Aligned_cols=126 Identities=29% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCCcEEEccccccc-cCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhc
Q 047549 122 SKLQTFRAGFSYLS-GSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMN 200 (479)
Q Consensus 122 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 200 (479)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A--------NLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T--------TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h--------hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 55666666666665 45566666666666666666666543 1 1455667777777777777656666666
Q ss_pred CCCCCeeeccCCcCccccC-ccccCCCCCCcEEEccCCcccccCC---ccCcCCCCCCEEEc
Q 047549 201 CTNLITLNLRINNFRGDLS-AYNFSTLHNLHTIDLGNNNFTGSFP---LTLTSCMFLTAIRL 258 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l 258 (479)
+++|++|++++|.+++ ++ ...+..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 87 l~~L~~L~ls~N~i~~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTCCEEECTTSCCCS-HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCCEEECCCCcCCC-hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6777777777776652 21 1234445555555555555543322 23344444444443
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-13 Score=129.57 Aligned_cols=217 Identities=15% Similarity=0.116 Sum_probs=112.6
Q ss_pred CCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCC
Q 047549 174 IGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFL 253 (479)
Q Consensus 174 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 253 (479)
|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+. .+....|..+++|+.+++..|.++..-...|. +.+|
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 4443 5666666554 554445555553 577777664 343 45555667777777777777666633333333 5667
Q ss_pred CEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCc
Q 047549 254 TAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNL 333 (479)
Q Consensus 254 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L 333 (479)
+.+.+..+ +..+...+|..+++|+.+++..+ ++.++. .+|.. .+|+.+.+..+ +.......+ ..+++|
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--~aF~~-~~L~~i~lp~~-i~~I~~~aF------~~c~~L 273 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--EAFRE-SGITTVKLPNG-VTNIASRAF------YYCPEL 273 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT--TTTTT-CCCSEEEEETT-CCEECTTTT------TTCTTC
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc--ccccc-CCccEEEeCCC-ccEEChhHh------hCCCCC
Confidence 77777643 55555566666677777776653 333322 22333 45555555221 211111111 144555
Q ss_pred cEEEeeCCcce-----ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccc
Q 047549 334 VVLGIGNCEIK-----GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408 (479)
Q Consensus 334 ~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 408 (479)
+.+++.++.+. ...+..|.+|++|+.+++.+ .+......+|..+.+|+.+.|..| ++.+.+.+|.++ .|+.+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 55555554432 22334555555555555552 344334445555555555555333 444445555555 55544
Q ss_pred ccc
Q 047549 409 EAK 411 (479)
Q Consensus 409 ~~~ 411 (479)
.+.
T Consensus 351 ~l~ 353 (401)
T 4fdw_A 351 KVE 353 (401)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-15 Score=121.84 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCCEEEccCCCCC--CCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhc
Q 047549 275 VSVSYLSINNNNLS--NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLG 352 (479)
Q Consensus 275 ~~L~~L~L~~n~l~--~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 352 (479)
++++.|++++|.++ .++. .+..+++|+.|++++|.+.+. ..+ ..+++|++|++++|.+++.+|..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~--~~~------~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI--ANL------PKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC--TTC------CCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc--hhh------hcCCCCCEEECCCCcccchHHHHhh
Confidence 45666666666665 3332 234445555555555554433 111 1344555555555555543444444
Q ss_pred CCCCCCEEeCCCCccccc-cCcccCCCCCCcEEEccCCcccccCC---ccccCCcccccc
Q 047549 353 KLKKLQVLDLGSNQITGP-IPGWLGNMPNLFYIDLSYNSISGEFP---KEFCGLPALALQ 408 (479)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~l 408 (479)
.+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.+
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 455555555555555432 12444455555555555555543333 234444444443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=120.32 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=78.0
Q ss_pred CCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCC
Q 047549 277 VSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKK 356 (479)
Q Consensus 277 L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 356 (479)
.+.++++++.++.++... .++|+.|++++|.+.+..+..+. .+++|++|++++|++++..+..+..+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-----~~~l~~L~l~~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-----PSSATRLELESNKLQSLPHGVFD------KLTQLTKLSLSQNQIQSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-----CTTCSEEECCSSCCCCCCTTTTT------TCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEecCCCCccCCCCC-----CCCCcEEEeCCCcccEeCHHHhc------CcccccEEECCCCcceEeChhHccCCCc
Confidence 467888888887666422 25677777777776654333222 4567777777777777555555667777
Q ss_pred CCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccc
Q 047549 357 LQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 357 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
|++|++++|++++..+..+..+++|++|++++|++++..+..|.+++.|+.
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 777777777777555556667777777777777777555555566666643
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=117.95 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=16.8
Q ss_pred CCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCccc
Q 047549 119 GNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS 159 (479)
Q Consensus 119 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (479)
..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 34444444444444444222223334444444444444433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-14 Score=118.69 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=54.9
Q ss_pred hhccCCCCEEEccCCCCCCCCCccccccCC-CCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch
Q 047549 271 ILALVSVSYLSINNNNLSNITGAIGILMGC-KNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT 349 (479)
Q Consensus 271 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 349 (479)
+..+.+|+.|++++|.++.++. +..+ ++|+.|++++|.+.+. ..+ ..+++|++|++++|++++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~----~~~~~~~L~~L~Ls~N~l~~~--~~l------~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN----LGATLDQFDAIDFSDNEIRKL--DGF------PLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC----GGGGTTCCSEEECCSSCCCEE--CCC------CCCSSCCEEECCSSCCCEECSC
T ss_pred cCCcCCceEEEeeCCCCchhHH----hhhcCCCCCEEECCCCCCCcc--ccc------ccCCCCCEEECCCCcccccCcc
Confidence 3455667777777776665432 2222 2555555555555442 111 1344555555555555543333
Q ss_pred hhcCCCCCCEEeCCCCccccccCc--ccCCCCCCcEEEccCCccc
Q 047549 350 WLGKLKKLQVLDLGSNQITGPIPG--WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~ 392 (479)
.+..+++|++|++++|++. .+|. .+..+++|++|++++|+++
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 3455555555555555554 2332 4455555555555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=116.90 Aligned_cols=132 Identities=15% Similarity=0.154 Sum_probs=76.8
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCC-CCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAA-ASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
+..+.+|++|++++|.++ .++. +..+ ++|++|++++|.+++. . .+..+++|++|++++|.+++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~--------~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--D--------GFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--C--------CCCCCSSCCEEECCSSCCCEECSC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--c--------ccccCCCCCEEECCCCcccccCcc
Confidence 445667777777777766 3443 3333 3677777777766643 1 145566777777777777654444
Q ss_pred hhhcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcccccCCcc----CcCCCCCCEEEccCCcc
Q 047549 197 FLMNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFTGSFPLT----LTSCMFLTAIRLSGNKI 263 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~l 263 (479)
.+..+++|++|++++|.+. .++. ..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|..
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 4566777777777777664 3432 23455566666666666655 33332 44555555555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-11 Score=118.89 Aligned_cols=308 Identities=14% Similarity=0.156 Sum_probs=186.3
Q ss_pred cccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCC-CcCCCCCCCcEEEccccccccCCCccCC
Q 047549 69 YPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLP-SGLGNFSKLQTFRAGFSYLSGSIPDDVS 143 (479)
Q Consensus 69 ~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 143 (479)
..++.++.+|+++.+..+ ++.+... +.+|+.+++..+ ++ .++ .++..+..|+.+.+..+ +......+|.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~---~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK---MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC---EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce---EccchhhcccccchhhcccCc-eeeecceeee
Confidence 446667777777777533 4433322 255666666543 22 222 24556666665554433 2222333444
Q ss_pred CCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCcccc
Q 047549 144 AAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223 (479)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 223 (479)
++..++...... +.....-.|..+++|+.+.+.++. +......|.++++|+.+.+..+ +. .+....|
T Consensus 138 ~~~~~~~~~~~~----------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F 204 (394)
T 4fs7_A 138 GCDFKEITIPEG----------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCF 204 (394)
T ss_dssp TCCCSEEECCTT----------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTT
T ss_pred cccccccccCcc----------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhh
Confidence 443322222111 111112236777888888886553 3345567778888888888765 33 4555677
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNL 303 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L 303 (479)
..+..|+.+.+..+... +.........|+.+.+... ++.+....+..+..++.+.+..+... +.. ..+..+..+
T Consensus 205 ~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~--~~F~~~~~l 278 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG--SLFYNCSGL 278 (394)
T ss_dssp TTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS--CTTTTCTTC
T ss_pred ccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec--ccccccccc
Confidence 78888888777655432 2334445567888877653 33444556777888888888765432 222 456677777
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
+.+......+.. ... ..+.+|+.+.+..+ ++..-..+|.+|++|+.+++.++ ++.....+|.++.+|+.
T Consensus 279 ~~~~~~~~~i~~----~~F-----~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 279 KKVIYGSVIVPE----KTF-----YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp CEEEECSSEECT----TTT-----TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred ceeccCceeecc----ccc-----cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence 777765543221 111 25678888888654 55455667888899999988754 55455678888899999
Q ss_pred EEccCCcccccCCccccCCccccccccccc
Q 047549 384 IDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 384 L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
+++..+ ++.+...+|.+|.+|+.+.++.+
T Consensus 348 i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 348 INFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 998776 76667778889888887766543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=112.83 Aligned_cols=97 Identities=21% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCC
Q 047549 302 NLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNL 381 (479)
Q Consensus 302 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 381 (479)
..+.+++++|.+.. +|.. .++++++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~--------~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTG--------IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSCCSS-CCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEeCCCCcCc-cCcc--------CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 35678888887765 3321 23678888888888887767778888888888888888886666677888888
Q ss_pred cEEEccCCcccccCCccccCCccccc
Q 047549 382 FYIDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 382 ~~L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
++|+|++|++++..+..|.++++|+.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCE
Confidence 88888888888666667777777754
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=111.28 Aligned_cols=95 Identities=22% Similarity=0.228 Sum_probs=69.8
Q ss_pred cEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcE
Q 047549 304 RMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383 (479)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 383 (479)
+.+++++|.+.. +|.. .+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++
T Consensus 15 ~~l~~~~n~l~~-iP~~--------~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAG--------IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCSS-CCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCCc-cCCC--------cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 677887777743 3432 2357888888888888766777888888888888888888665666778888888
Q ss_pred EEccCCcccccCCccccCCccccc
Q 047549 384 IDLSYNSISGEFPKEFCGLPALAL 407 (479)
Q Consensus 384 L~L~~N~l~~~~p~~~~~l~~L~~ 407 (479)
|+|++|++++..+..|.++++|+.
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTH 109 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSE
T ss_pred EECCCCccceeCHHHhccccCCCE
Confidence 888888888655556777777754
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=113.15 Aligned_cols=319 Identities=13% Similarity=0.090 Sum_probs=211.8
Q ss_pred CCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCCCcEE
Q 047549 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTF 127 (479)
Q Consensus 52 ~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L 127 (479)
.+++.+.+.. .++..-..++.+|++|+.+++..+ ++.+... ...|+.+.+..+--. .-..++..+..++..
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~---i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKS---IGVEAFKGCDFKEIT 145 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCE---ECTTTTTTCCCSEEE
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceee---ecceeeecccccccc
Confidence 4799999974 466555678899999999999755 4443322 267777766654221 112345555443333
Q ss_pred EccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCee
Q 047549 128 RAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITL 207 (479)
Q Consensus 128 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 207 (479)
..... ......+|.++++|+.+.+..+... ++. -.|..+.+|+.+.+..+ ++......+.++..|+.+
T Consensus 146 ~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~--I~~-------~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 146 IPEGV--TVIGDEAFATCESLEYVSLPDSMET--LHN-------GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCTTC--CEECTTTTTTCTTCCEEECCTTCCE--ECT-------TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cCccc--cccchhhhcccCCCcEEecCCccce--ecc-------ccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 32222 2233457888999999998654311 122 13677888888888765 554556778888889888
Q ss_pred eccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCC
Q 047549 208 NLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 208 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 287 (479)
.+..+... +.. .......|+.+.+... ++......+..+..++.+.+..+.. .+....|..+..++.+....+.+
T Consensus 214 ~~~~~~~~--i~~-~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 214 EFPNSLYY--LGD-FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCTTCCE--ECT-TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE
T ss_pred ecCCCceE--eeh-hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee
Confidence 87766542 222 2334567888887643 3324445677888899998887643 34556778888888888766543
Q ss_pred CCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCcc
Q 047549 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQI 367 (479)
Q Consensus 288 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 367 (479)
. . ..+..+.+|+.+.+..+ +.......+ ..+.+|+.+++..+ ++..-..+|.+|++|+.+++..+ +
T Consensus 289 ~---~--~~F~~~~~L~~i~l~~~-i~~I~~~aF------~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 289 P---E--KTFYGCSSLTEVKLLDS-VKFIGEEAF------ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp C---T--TTTTTCTTCCEEEECTT-CCEECTTTT------TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred c---c--ccccccccccccccccc-cceechhhh------cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence 2 1 35677888998888654 221111111 26778999999654 66555678999999999999876 6
Q ss_pred ccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccc
Q 047549 368 TGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQ 408 (479)
Q Consensus 368 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 408 (479)
+.....+|..+++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred cEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6566778999999999999765 33 345679999988753
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.7e-15 Score=129.04 Aligned_cols=127 Identities=26% Similarity=0.316 Sum_probs=69.1
Q ss_pred hhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCch
Q 047549 270 TILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPT 349 (479)
Q Consensus 270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 349 (479)
.+..+++|++|++++|.++.++ .+..+++|+.|++++|.+. .+|... ..+++|++|++++|++++ +|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~-~l~~~~------~~~~~L~~L~L~~N~l~~-l~- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIK-KIENLD------AVADTLEELWISYNQIAS-LS- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEEC-SCSSHH------HHHHHCSEEEEEEEECCC-HH-
T ss_pred HHhcCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcc-cccchh------hcCCcCCEEECcCCcCCc-CC-
Confidence 3444444444444444444322 2333444444444444443 122111 134567777777777764 33
Q ss_pred hhcCCCCCCEEeCCCCccccccC-cccCCCCCCcEEEccCCcccccCCcc----------ccCCccccccc
Q 047549 350 WLGKLKKLQVLDLGSNQITGPIP-GWLGNMPNLFYIDLSYNSISGEFPKE----------FCGLPALALQE 409 (479)
Q Consensus 350 ~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~l~ 409 (479)
.+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++..|.. +..+++|+.++
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 46667777777777777764322 35667777777777777776554432 55566666554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-15 Score=128.31 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=89.8
Q ss_pred hhcCCCCCeeeccCCcCccccCc-----cccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh
Q 047549 198 LMNCTNLITLNLRINNFRGDLSA-----YNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL 272 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 272 (479)
+.....++.++++.+.+.+.++. ..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. +|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhh
Confidence 55566777777777777654442 134445555555555555543 33 44444555555555555543 333344
Q ss_pred ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCc-hhh
Q 047549 273 ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP-TWL 351 (479)
Q Consensus 273 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l 351 (479)
.+++|+.|++++|++++++ .+ ..+++|++|++++|++++..+ ..+
T Consensus 91 ~~~~L~~L~L~~N~l~~l~----~~------------------------------~~l~~L~~L~l~~N~i~~~~~~~~l 136 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS----GI------------------------------EKLVNLRVLYMSNNKITNWGEIDKL 136 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH----HH------------------------------HHHHHSSEEEESEEECCCHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCC----cc------------------------------ccCCCCCEEECCCCcCCchhHHHHH
Confidence 4444555555544444321 11 245677788888877774322 467
Q ss_pred cCCCCCCEEeCCCCccccccCc----------ccCCCCCCcEEEccCCccc
Q 047549 352 GKLKKLQVLDLGSNQITGPIPG----------WLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~L~~N~l~ 392 (479)
..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7788888888888888755443 267788888886 66665
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.34 E-value=9.5e-12 Score=105.44 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=15.6
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCccc
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS 159 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (479)
++|++|++++|.+++..|..|.++++|++|++++|+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 33444444444444333333444444444444444433
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=104.09 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=16.4
Q ss_pred CCCcEEEccccccccCCCccCCCCCCCCEEECCCCccc
Q 047549 122 SKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLS 159 (479)
Q Consensus 122 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 159 (479)
++|++|++++|.+.+..|..|.++++|++|++++|+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC
Confidence 34444444444444333334444444444444444443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.3e-13 Score=126.97 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=34.6
Q ss_pred cCCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccccCcccCCC---CC--CcEEE--ccCCccc
Q 047549 330 FQNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM---PN--LFYID--LSYNSIS 392 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~--L~~L~--L~~N~l~ 392 (479)
.++|++|++++|.+++. ++..+..+++|++|+|++|.|.+.....+..+ .. ++.+. +..|.+.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 34677777777777643 33445566778888888888765433333221 21 66666 6666665
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-12 Score=124.28 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=27.1
Q ss_pred CCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCCcccccC----hhhhhccCCCCEEEccCCCCC
Q 047549 225 TLHNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSGNKIEEQI----SPTILALVSVSYLSINNNNLS 288 (479)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 288 (479)
..++|++|++++|.+++. ++..+...++|+.|++++|.++... +..+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 334444444444444321 1223334444555555555544321 122223345555555555444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.8e-11 Score=112.28 Aligned_cols=74 Identities=24% Similarity=0.196 Sum_probs=46.8
Q ss_pred ccCCccEEEeeC-CcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 329 AFQNLVVLGIGN-CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 329 ~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
.+.+|++|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 103 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC
Confidence 445666666664 66665555666666666666766666666666666666666666666666664444444443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-08 Score=97.50 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=56.1
Q ss_pred cCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccc
Q 047549 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 409 (479)
+..|+.+.+..+-.. .-...|.+++.|+.+.+. +.+......+|..+.+|+.++|..+ ++.+...+|.+|.+|+.+.
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 345555555433222 333455556666666654 2333333445556666666666543 4434455566666665555
Q ss_pred cccccCCCCcccCcccccccccccccccccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCCC
Q 047549 410 AKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNF 478 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~l 478 (479)
+..... .+....|....+| +.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 341 ip~sv~--~I~~~aF~~C~~L--------------~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSSVT--KIPESAFSNCTAL--------------NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTTCC--BCCGGGGTTCTTC--------------CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECcccC--EEhHhHhhCCCCC--------------CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 543211 1122223332322 235555554331 3566778888888877654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-08 Score=96.60 Aligned_cols=269 Identities=13% Similarity=0.117 Sum_probs=128.5
Q ss_pred cCCCCCCCcEEEccccc---cccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 117 GLGNFSKLQTFRAGFSY---LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
+|.+|.+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ +..+..-.|..+.+|+.+.+..+ ++..
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---------~~~I~~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---------VTEIDSEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---------CSEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---------cceehhhhhhhhcccccccccce-eeee
Confidence 45556666666665442 33223344555555555544322 11111112445556666666433 2223
Q ss_pred cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh-
Q 047549 194 LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL- 272 (479)
Q Consensus 194 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~- 272 (479)
....|..+..|+.+.+..+ +. .+....|.. ..|+.+.+..+-.. .....+..+..+.................+.
T Consensus 152 ~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~ 227 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEK 227 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEE
T ss_pred cccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccccccceeecc
Confidence 3445555666666665443 22 333333432 34555555443221 3334455555555554443322111000000
Q ss_pred ------------ccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeC
Q 047549 273 ------------ALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGN 340 (479)
Q Consensus 273 ------------~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (479)
....+..+.+.. .++.+.. .+|..+..|+.+.+..+... +..... ..+.+|+.+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~--~aF~~c~~L~~i~lp~~~~~--I~~~aF-----~~c~~L~~i~l~- 296 (394)
T 4gt6_A 228 SANGDYALIRYPSQREDPAFKIPN-GVARIET--HAFDSCAYLASVKMPDSVVS--IGTGAF-----MNCPALQDIEFS- 296 (394)
T ss_dssp CTTSCEEEEECCTTCCCSEEECCT-TEEEECT--TTTTTCSSCCEEECCTTCCE--ECTTTT-----TTCTTCCEEECC-
T ss_pred cccccccccccccccccceEEcCC-cceEccc--ceeeecccccEEecccccce--ecCccc-----ccccccccccCC-
Confidence 111222222211 1111111 34566667777666433211 111100 145667777774
Q ss_pred CcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccc
Q 047549 341 CEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 341 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~ 412 (479)
+.++......|.+|.+|+.++|.++ ++.....+|..+.+|+.+.+..+ ++.+...+|.+|++|+.+.+.+
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 3344344566777777777777654 44344566777777777777544 5545566777777777766654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=104.41 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=39.4
Q ss_pred eeecCCC-cCCCcCCCC---CCCCEEEcCC-cccccCCCCC-CcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEEC
Q 047549 80 HLNLSHN-HLSFLSPSV---PFLSILDFSH-NYFRGHCQLP-SGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISL 153 (479)
Q Consensus 80 ~L~L~~n-~l~~~~~~~---~~L~~L~L~~-n~l~~~~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 153 (479)
.++++++ +++.++. + .+|++|+|++ |.+.+ +| ..|..+++|++|+|++|++++..|..|.++++|++|+|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH---LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE---ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC---cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3455555 5554443 3 3455555553 55542 22 34555555555555555555544445555555555555
Q ss_pred CCCcccc
Q 047549 154 PVNQLSG 160 (479)
Q Consensus 154 ~~n~l~~ 160 (479)
++|++++
T Consensus 88 ~~N~l~~ 94 (347)
T 2ifg_A 88 SFNALES 94 (347)
T ss_dssp CSSCCSC
T ss_pred CCCccce
Confidence 5555553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-07 Score=89.01 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=86.9
Q ss_pred CCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCc
Q 047549 225 TLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLR 304 (479)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~ 304 (479)
....+..+.+..... ......+..+.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++.+.. .++..+..|+
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~--~aF~~~~~l~ 266 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS--FLLQNCTALK 266 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--TTTTTCTTCC
T ss_pred cccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--cccceeehhc
Confidence 344444444433221 133344555666666666543 33344455666667777766543 333322 3455566666
Q ss_pred EEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEE
Q 047549 305 MLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYI 384 (479)
Q Consensus 305 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 384 (479)
.+.+..+ +.......+ ..+.+|+.+.+.++.++..-..+|.+|.+|+.+.|..+ ++..-..+|.++.+|+.+
T Consensus 267 ~i~l~~~-i~~i~~~aF------~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLC------SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp EEEECCC-CSEECTTTT------TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred ccccccc-ceecccccc------ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 6665332 111111111 14556666666666665444556666777777766543 443344566666677766
Q ss_pred EccCCcccccCCccccCCccc
Q 047549 385 DLSYNSISGEFPKEFCGLPAL 405 (479)
Q Consensus 385 ~L~~N~l~~~~p~~~~~l~~L 405 (479)
.+..+ ++.+-..+|.++..+
T Consensus 339 ~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 339 SYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCCTT-CCEECTTTTTTSSCC
T ss_pred EECCc-cCEEchhHhhCCCCC
Confidence 66543 554555566666443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-09 Score=100.15 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=73.0
Q ss_pred cCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhh--ccCCCCEEEccCC--CCCCCCCcccccc
Q 047549 223 FSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTIL--ALVSVSYLSINNN--NLSNITGAIGILM 298 (479)
Q Consensus 223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n--~l~~~~~~~~~l~ 298 (479)
+..+|+|+.|+++++.-. .++. + ..++|+.|++..+.+.......+. .+++|+.|+|+.+ ....... +..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~-~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-MNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-GGGTG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-HHHHH
Confidence 455667777777665211 2222 2 256777777777666543333333 4666777766421 1100000 00000
Q ss_pred CCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhh---cCCCCCCEEeCCCCccccc----c
Q 047549 299 GCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWL---GKLKKLQVLDLGSNQITGP----I 371 (479)
Q Consensus 299 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~----~ 371 (479)
..+....+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. +
T Consensus 244 ------------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 244 ------------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp ------------------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred ------------------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence 00011235667777777766654332222 2356677777777776643 2
Q ss_pred CcccCCCCCCcEEEccCCccccc
Q 047549 372 PGWLGNMPNLFYIDLSYNSISGE 394 (479)
Q Consensus 372 ~~~~~~l~~L~~L~L~~N~l~~~ 394 (479)
+..+..+++|+.|++++|.++..
T Consensus 300 ~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 300 LDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HTTHHHHTTCSEEECCSBBCCHH
T ss_pred HhhcccCCcceEEECCCCcCCHH
Confidence 22334456777777777766543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-06 Score=81.86 Aligned_cols=267 Identities=10% Similarity=0.034 Sum_probs=157.5
Q ss_pred cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch
Q 047549 117 GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ 196 (479)
Q Consensus 117 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~ 196 (479)
+|.+|.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +. .+..-.|.. .+|+.+.+..+ ++.....
T Consensus 64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~--------~I~~~aF~~-~~L~~i~lp~~-~~~i~~~ 130 (379)
T 4h09_A 64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK--------KFGDYVFQG-TDLDDFEFPGA-TTEIGNY 130 (379)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC--------EECTTTTTT-CCCSEEECCTT-CCEECTT
T ss_pred HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee--------Eeccceecc-CCcccccCCCc-ccccccc
Confidence 5667777777777543 443334455555 4665554322 11 111112333 35677766544 2222233
Q ss_pred hhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccc------------cCCccCcCCCCCCEEEccCCccc
Q 047549 197 FLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG------------SFPLTLTSCMFLTAIRLSGNKIE 264 (479)
Q Consensus 197 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~L~~L~l~~n~l~ 264 (479)
.|.++ +++...+..+ ++ .+....+..+..++.+.+..+.... .....+.....+..+.+.... .
T Consensus 131 ~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 206 (379)
T 4h09_A 131 IFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-K 206 (379)
T ss_dssp TTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-C
T ss_pred ccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-e
Confidence 34333 4555544332 22 3333456666667666665433211 112233445556666655432 2
Q ss_pred ccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcce
Q 047549 265 EQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIK 344 (479)
Q Consensus 265 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 344 (479)
......+..+..++.+.+..+ +..+.. ..+..+..|+.+.+..+ +.......+ ..+.+|+.+.+..+ ++
T Consensus 207 ~i~~~~f~~~~~l~~i~~~~~-~~~i~~--~~f~~~~~L~~i~lp~~-v~~I~~~aF------~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 207 TVTAYGFSYGKNLKKITITSG-VTTLGD--GAFYGMKALDEIAIPKN-VTSIGSFLL------QNCTALKTLNFYAK-VK 275 (379)
T ss_dssp EECTTTTTTCSSCSEEECCTT-CCEECT--TTTTTCSSCCEEEECTT-CCEECTTTT------TTCTTCCEEEECCC-CS
T ss_pred EEeecccccccccceeeeccc-eeEEcc--ccccCCccceEEEcCCC-ccEeCcccc------ceeehhcccccccc-ce
Confidence 334556677788888888654 332322 45678888999888654 221111111 25678899888654 55
Q ss_pred ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccc
Q 047549 345 GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 345 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~ 412 (479)
......|.+|++|+.+.+.++.++.....+|.++.+|+.++|..+ ++.+...+|.+|++|+.+.+..
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 445567899999999999988888666788999999999999754 7666778899999998877654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-09 Score=99.64 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCCCCCEEeCCCCccccccCccc---CCCCCCcEEEccCCcccccC----CccccCCccccccccccccC
Q 047549 353 KLKKLQVLDLGSNQITGPIPGWL---GNMPNLFYIDLSYNSISGEF----PKEFCGLPALALQEAKNRAD 415 (479)
Q Consensus 353 ~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~~~~~~~ 415 (479)
.+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++.- +..+..++.|+.++++.|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 57899999999999875433222 35789999999999998643 33445678888888877653
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=4e-08 Score=84.11 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=44.5
Q ss_pred CCccEEEeeCCcceec----CchhhcCCCCCCEEeC--CCCccccc----cCcccCCCCCCcEEEccCCccc
Q 047549 331 QNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDL--GSNQITGP----IPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
++|++|++++|.+++. +...+...++|++|+| ++|.+.+. +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5677777777777643 4456677788888888 77888643 3345566788888888888876
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-07 Score=79.63 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCCcEEEccCCccccc----CCccCcCCCCCCEEEc--cCCcccccC----hhhhhccCCCCEEEccCCCC
Q 047549 227 HNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRL--SGNKIEEQI----SPTILALVSVSYLSINNNNL 287 (479)
Q Consensus 227 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l 287 (479)
+.|++|++++|.+... +...+...+.|++|++ ++|.+.... ...+...++|++|++++|.+
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444444444444321 2233344445555555 455554332 12233334555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-06 Score=76.80 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=59.0
Q ss_pred ccCCccEEEeeCCccee--cCchhhcCCCCCCEEeCCCCccccc-cCcccCCCCCCcEEEccCCcccccCCc-------c
Q 047549 329 AFQNLVVLGIGNCEIKG--QIPTWLGKLKKLQVLDLGSNQITGP-IPGWLGNMPNLFYIDLSYNSISGEFPK-------E 398 (479)
Q Consensus 329 ~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~-------~ 398 (479)
.+++|+.|++++|++++ .++..+..+++|+.|+|++|++.+. ....+..+ +|++|+|++|.+.+..|+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 56789999999999886 3456677899999999999999854 11223333 899999999999876653 2
Q ss_pred ccCCccccccc
Q 047549 399 FCGLPALALQE 409 (479)
Q Consensus 399 ~~~l~~L~~l~ 409 (479)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666553
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.98 E-value=8.4e-06 Score=73.30 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred CCCEEEccCCcccccCh-------hhhhccCCCCEEE
Q 047549 252 FLTAIRLSGNKIEEQIS-------PTILALVSVSYLS 281 (479)
Q Consensus 252 ~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~ 281 (479)
+|++|++++|.+.+..| ..+..+++|+.||
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45555555555543222 2345566666665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.2e-05 Score=66.96 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=13.4
Q ss_pred CCEEEccCC-cCccccchhhhcCCCCCeeeccCC
Q 047549 180 LKSLKLHTN-SLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 180 L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
|++|++++| ++|..--..+..+++|++|+++++
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 444444443 243332233334444444444443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.65 E-value=1.7e-05 Score=66.08 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=5.6
Q ss_pred CCCCCcEEEccCc
Q 047549 299 GCKNLRMLLLCKI 311 (479)
Q Consensus 299 ~~~~L~~L~l~~n 311 (479)
.+++|+.|+++++
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 3444444444433
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=4.4e-05 Score=64.87 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCC---cC
Q 047549 118 LGNFSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTN---SL 190 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n---~l 190 (479)
+..-+.|+.|+|++|.+.+. +.+.+...+.|++|+|++|.++......+... +..-+.|++|+|+++ .+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a----L~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS----TLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH----TTTTCCCSEEECCCCSSCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH----HhhCCceeEEECCCCcCcCc
Confidence 33444555555555555431 12222334555555555555553322222211 223344555665543 22
Q ss_pred cc----ccchhhhcCCCCCeeeccCCc
Q 047549 191 SG----FLPQFLMNCTNLITLNLRINN 213 (479)
Q Consensus 191 ~~----~~~~~l~~l~~L~~L~l~~n~ 213 (479)
.. .+...+..-+.|+.|+++.|.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 21 123334444555555555443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00013 Score=61.88 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCC---ccccc----cCcccCCCCCCcEEEccCCccc
Q 047549 331 QNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSN---QITGP----IPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n---~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
..|+.|+|++|.+++. +...+...+.|++|+|++| .+.+. +...+...+.|+.|+++.|.+.
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4577777777777643 3445666677888888765 33321 3345566677888888776544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0077 Score=47.49 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=26.8
Q ss_pred eeecCCCcCC--CcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEcccccc
Q 047549 80 HLNLSHNHLS--FLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYL 134 (479)
Q Consensus 80 ~L~L~~n~l~--~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~ 134 (479)
.++.+++.++ .++..+ ++|++|+|++|.++ .+|. .+..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT---ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS---SCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCC---ccChhhhhhccccCEEEecCCCe
Confidence 4555555554 444333 34555555555555 3443 344555666666665544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0052 Score=48.50 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=29.1
Q ss_pred EEEeeCCcce-ecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCccc
Q 047549 335 VLGIGNCEIK-GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSIS 392 (479)
Q Consensus 335 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 392 (479)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444555544 12332221 34566666666666444555566666666666666553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 479 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 5e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.5 bits (176), Expect = 1e-14
Identities = 74/396 (18%), Positives = 124/396 (31%), Gaps = 89/396 (22%)
Query: 10 QACNQIDQETLLSLNFNASNPPL--NWSFSTDCC--LWEGIKCDSEAQVTHLWLPDRGLR 65
+ CN D++ LL + + NP +W +TDCC W G+ CD++ Q +
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVN------- 53
Query: 66 GSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQ 125
+L+LS +L +PS L N L
Sbjct: 54 --------------NLDLSGLNLP--------------------KPYPIPSSLANLPYLN 79
Query: 126 TFR-AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLK 184
G + L G IP ++ L + + +SGAI + + + +L
Sbjct: 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL--------D 131
Query: 185 LHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFP 244
N+LSG LP + + NL+ + N G + S ++ + N TG P
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 245 LTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLR 304
T + + N+ ++ +
Sbjct: 192 PTFANLNL-----------------------------AFVDLSRNMLEGDASVLFGSDKN 222
Query: 305 MLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGS 364
+ A + +L N I G +P L +LK L L++
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDL-----RNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 365 NQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFC 400
N + G IP GN+ + N P C
Sbjct: 278 NNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 43/268 (16%), Positives = 81/268 (30%), Gaps = 41/268 (15%)
Query: 222 NFSTLHNLHTIDLGNNNFTGSFPL--TLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279
+ + ++ +DL N +P+ +L + +L + + G
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------------------ 86
Query: 280 LSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIG 339
NNL + + + + + LV L
Sbjct: 87 -----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--------SQIKTLVTLDFS 133
Query: 340 NCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY--------IDLSYNSI 391
+ G +P + L L + N+I+G IP G+ LF +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 392 SGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRN 451
F L L+ + G+ ++ L + LRN
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 452 NGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
N + G++P + + FLH L++S NN
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 68.9 bits (167), Expect = 3e-13
Identities = 67/374 (17%), Positives = 123/374 (32%), Gaps = 40/374 (10%)
Query: 52 AQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFR 109
A+ L + ++ L + L + + + L+ ++FS+N
Sbjct: 22 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 79
Query: 110 GHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNL 169
+ L N +KL + ++ P + + + N
Sbjct: 80 D----ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 170 T----SLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFST 225
S I ++ L L G L NL TL + +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195
Query: 226 LHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNN 285
L NL ++ NN + PL + L + L+GN++++ T+ +L +++ L + NN
Sbjct: 196 LTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251
Query: 286 NLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDEN--------------QITISSYAFQ 331
+SN+ L G L L L P + +
Sbjct: 252 QISNLAP----LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307
Query: 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSI 391
NL L + I P + L KLQ L +N+++ L N+ N+ ++ +N I
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQI 363
Query: 392 SGEFPKEFCGLPAL 405
S P L +
Sbjct: 364 SDLTP--LANLTRI 375
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 68.5 bits (166), Expect = 4e-13
Identities = 53/215 (24%), Positives = 77/215 (35%), Gaps = 25/215 (11%)
Query: 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDL 234
KL NL+SL N +S P TNL L+L N + ++L NL +DL
Sbjct: 194 AKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD---IGTLASLTNLTDLDL 248
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
NN + PL+ LT ++L N+I L N N I
Sbjct: 249 ANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGL------TALTNLELNENQLEDI 300
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKL 354
+ KNL L L + P + L L N ++ + L L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISPVSS--------LTKLQRLFFANNKVSD--VSSLANL 350
Query: 355 KKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
+ L G NQI+ P L N+ + + L+
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.2 bits (134), Expect = 3e-09
Identities = 56/323 (17%), Positives = 99/323 (30%), Gaps = 24/323 (7%)
Query: 168 NLTSL-NIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL 226
+ S+ + L NL + N L+ P L N T L+ + + N N + L
Sbjct: 55 GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNL 112
Query: 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286
L + + LT + + L++ +S ++ +
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172
Query: 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQIT--ISSYAFQNLVVLGIGNCEIK 344
+ I + +L I NQI+ NL L + ++K
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 232
Query: 345 GQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPA 404
L L L LDL +NQI+ P L + L + L N IS P L
Sbjct: 233 D--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-----LAG 283
Query: 405 LALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP--------AIYLRNNGLNG 456
L + + +N + + P ++ NN ++
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 343
Query: 457 SIPIEIGNVMFLHVLDLSLNNFS 479
+ N+ ++ L N S
Sbjct: 344 --VSSLANLTNINWLSAGHNQIS 364
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 61/332 (18%), Positives = 96/332 (28%), Gaps = 39/332 (11%)
Query: 177 LANLKSLKLHTNSLSGFLPQF-LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235
LA L +++ + Q L T L L I + G L+NL I+
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG------VEYLNNLTQINFS 74
Query: 236 NNNFTGSFPLT-LTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAI 294
NN T PL LT + + I + T L +++ I + + +
Sbjct: 75 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 295 GILMGCKNLRMLLLCKIFFHEAIPDENQITISSYA------------------------- 329
L N + ++
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 330 -FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSY 388
NL L N +I P + L L L NQ+ G L ++ NL +DL+
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250
Query: 389 NSISGEFP-KEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAI 447
N IS P L L L + L + + + +L
Sbjct: 251 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310
Query: 448 YLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
YL N S + ++ L L + N S
Sbjct: 311 YLTLYFNNISDISPVSSLTKLQRLFFANNKVS 342
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 3e-05
Identities = 35/189 (18%), Positives = 59/189 (31%), Gaps = 24/189 (12%)
Query: 38 TDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SV 95
T+ + + + L L L+ LT+L L+L++N +S L+P +
Sbjct: 205 TNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL 262
Query: 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV 155
L+ L N L + S + L ++L
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN------LTYLTLYF 316
Query: 156 NQLSGAIS-NGVVNLTSLN-----------IGKLANLKSLKLHTNSLSGFLPQFLMNCTN 203
N +S + + L L + L N+ L N +S P L N T
Sbjct: 317 NNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTR 374
Query: 204 LITLNLRIN 212
+ L L
Sbjct: 375 ITQLGLNDQ 383
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.8 bits (159), Expect = 1e-12
Identities = 57/294 (19%), Positives = 89/294 (30%), Gaps = 38/294 (12%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
L + + L L N ++ N NL TL L N +S F+ L
Sbjct: 21 GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLV 79
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
L + L N L L +R+ N+I + L + + + N L
Sbjct: 80 KLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347
+ G G K L + + D N TI +L L + +I
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIA---------DTNITTIPQGLPPSLTELHLDGNKITKVD 187
Query: 348 PTWLGKLKKLQVLDLGSNQITG-----------------------PIPGWLGNMPNLFYI 384
L L L L L N I+ +PG L + + +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247
Query: 385 DLSYNSISGEFPKEFCGLPALALQEA--KNRADGNQLQLPLFVPETKCALYNQQ 436
L N+IS +FC + + N +Q P T +Y +
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.5 bits (140), Expect = 4e-10
Identities = 44/252 (17%), Positives = 75/252 (29%), Gaps = 28/252 (11%)
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
+ +DL NN T + L + L NKI + LV + L ++ N L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347
+ + + + + K+ + +V LG + G
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKS---------VFNGLNQMIVVELGTNPLKSSGIE 142
Query: 348 PTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALAL 407
+KKL + + IT G P+L + L N I+ GL LA
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 408 QEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIEIGNVMF 467
+ + NKL +P + + +
Sbjct: 200 LGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV---------------KVPGGLADHKY 243
Query: 468 LHVLDLSLNNFS 479
+ V+ L NN S
Sbjct: 244 IQVVYLHNNNIS 255
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.8 bits (133), Expect = 4e-09
Identities = 45/243 (18%), Positives = 70/243 (28%), Gaps = 20/243 (8%)
Query: 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGH 111
+ L L + + L L L LS N L L + L L N
Sbjct: 56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115
Query: 112 CQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTS 171
+ N + SG L I + N+T+
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-----------NITT 164
Query: 172 LNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHT 231
+ G +L L L N ++ L NL L L N+ + +T +L
Sbjct: 165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRE 223
Query: 232 IDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE------QISPTILALVSVSYLSINNN 285
+ L NN P L ++ + L N I S S +S+ +N
Sbjct: 224 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
Query: 286 NLS 288
+
Sbjct: 283 PVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 48/298 (16%)
Query: 76 THLCHLNLSHNHLSFLSPSV----PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGF 131
L+L +N ++ + L L +N P KL+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSK 88
Query: 132 SYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLS 191
+ L L + ++ ++ NG+ + + L + S
Sbjct: 89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE---------LGTNPLKSS 139
Query: 192 GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCM 251
G L + + N ++ +L + L N T +L
Sbjct: 140 GIENGAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 195
Query: 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKI 311
L + LS N I + ++ + L +NNN L + G + + + +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL------ 249
Query: 312 FFHEAIPDENQIT-ISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368
N I+ I S F P + K + L SN +
Sbjct: 250 -------HNNNISAIGSNDFCP---------------PGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 5/154 (3%)
Query: 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390
+ +L + N +I LK L L L +N+I+ PG + L + LS N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 391 ISGEFPKEFCGLPAL-----ALQEAKNRADGNQLQLPLFVPETKCALYNQQYNKLFSLPP 445
+ K L L + + + Q+ + T + N F
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 446 AIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNNFS 479
+ I G L L L N +
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 184
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 1e-09
Identities = 46/266 (17%), Positives = 74/266 (27%), Gaps = 33/266 (12%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR------------ 215
L ++ +G A + + LH N +S C NL L L N
Sbjct: 22 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 216 ------------GDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKI 263
+ F L LHT+ L P L + L N +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 264 EEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQI 323
+ T L ++++L ++ N +S++ G +L LLL + P +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 324 TISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFY 383
+ L L+ LQ L L N L
Sbjct: 200 LGRLMTLYLF------ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQK 252
Query: 384 IDLSYNSISGEFPKEFCGLPALALQE 409
S + + P+ G L
Sbjct: 253 FRGSSSEVPCSLPQRLAGRDLKRLAA 278
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 12/216 (5%)
Query: 76 THLCHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSY- 133
+ L N +S + + L + ++ + L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 134 -LSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG 192
L P L + L + L LA L+ L L N+L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCG--------LQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 193 FLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMF 252
+ NL L L N + F LH+L + L N P
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 253 LTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288
L + L N + + + L ++ YL +N+N
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 40/244 (16%), Positives = 72/244 (29%), Gaps = 16/244 (6%)
Query: 54 VTHLWLPDRGLRGSIYPFTGKLTHL---CHLNLSHNHLSFLSPSVPFLSILDFSHNYFRG 110
++L + +L + + + + L + +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 111 HCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLT 170
P+ +L T L P A+L+ + L N L + +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 171 SLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLH 230
NL L LH N +S + +L L L N + + F L L
Sbjct: 154 --------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLM 204
Query: 231 TIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNI 290
T+ L NN + L L +RL+ N L ++L + S +
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL----WAWLQKFRGSSSEV 260
Query: 291 TGAI 294
++
Sbjct: 261 PCSL 264
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 38/246 (15%), Positives = 70/246 (28%), Gaps = 27/246 (10%)
Query: 189 SLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG-SFPLTL 247
+ P + + R D + + +DL N+ + L
Sbjct: 8 TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67
Query: 248 TSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLL 307
+ C L + L G ++ + I T+ ++ L+++ + + +L C L L
Sbjct: 68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127
Query: 308 LCKIFFHEAIPDENQITISSYAFQNLVVLGIG-------------------------NCE 342
L F + + S L + G +
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187
Query: 343 IKGQIPTWLGKLKKLQVLDL-GSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCG 401
+K +L LQ L L I LG +P L + + G
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247
Query: 402 LPALAL 407
LP L +
Sbjct: 248 LPHLQI 253
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 34/243 (13%), Positives = 74/243 (30%), Gaps = 4/243 (1%)
Query: 153 LPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG-FLPQFLMNCTNLITLNLRI 211
L ++ ++ ++ + L + + L L C+ L L+L
Sbjct: 21 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80
Query: 212 NNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTI 271
D + NL ++L + F L L+ + + +
Sbjct: 81 LRL-SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 139
Query: 272 LALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIF-FHEAIPDENQITISSYAF 330
V+ +I NLS + +R +++ +N +
Sbjct: 140 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 199
Query: 331 QNLVVLGIGNCE-IKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
L L + C I + LG++ L+ L + G + +P+L +
Sbjct: 200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFT 259
Query: 390 SIS 392
+I+
Sbjct: 260 TIA 262
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.4 bits (113), Expect = 5e-07
Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 7/221 (3%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
+T + N L+ L +L + + N+ + A FS L
Sbjct: 19 KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78
Query: 228 NLHTIDLGN-NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNN 286
LH I + NN P + L + +S I+ + + L I +N
Sbjct: 79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138
Query: 287 LSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ 346
+ + +L L K + Q + N ++
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQ------EIHNCAFNGTQLDELNLSDNNNLEEL 192
Query: 347 IPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLS 387
+LD+ +I L N+ L
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 47.3 bits (111), Expect = 1e-06
Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 19/219 (8%)
Query: 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236
LAN + ++++ + Q + + TL+ + L+NL ++L +
Sbjct: 18 LANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72
Query: 237 NNFTG--------SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLS 288
N T S L + + ++ +NL
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 289 NITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIP 348
+ + + L L + + +++ L L + +I P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL--SKLTTLKADDNKISDISP 190
Query: 349 TWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLS 387
L L L + L +NQI+ P L N NLF + L+
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 40/212 (18%), Positives = 64/212 (30%), Gaps = 15/212 (7%)
Query: 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLS 259
N I + +N ++ + L + T+ T + L + L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELK 71
Query: 260 GNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCK------NLRMLLLCKIFF 313
N+I + L ++ LS N + + + L
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 314 HEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPG 373
D NQIT S + + + T L L KL L N+I+ P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 374 WLGNMPNLFYIDLSYNSISGEFPKEFCGLPAL 405
L ++PNL + L N IS P L
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNL 219
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 13/194 (6%)
Query: 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLS 259
I NL+ + ++ + L+++ I N++ + +T + L+
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLN 76
Query: 260 GNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRML------LLCKIFF 313
GNK+ + L + +L N + + L L+
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 314 HEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPG 373
N+IT + + + + + + L L KLQ L L N I+
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA- 195
Query: 374 WLGNMPNLFYIDLS 387
L + NL ++L
Sbjct: 196 -LAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.001
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 316 AIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWL 375
+P + S AF + + + + +L + + ++ I +
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--I 64
Query: 376 GNMPNLFYIDLSYNSISGEFPKEFC 400
+PN+ + L+ N ++ P
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKPLANL 89
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 34/222 (15%), Positives = 51/222 (22%), Gaps = 37/222 (16%)
Query: 168 NLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLH 227
NLT+L + L L N L F LM T L LNL L
Sbjct: 21 NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
L + + + +
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVL-------------------------------DVSF 109
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347
+ +T + L K + +P + + N +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS-----LANNNLTELP 164
Query: 348 PTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYN 389
L L+ L L L N + IP L + L N
Sbjct: 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 340 NCEIKG--QIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390
NC+ + +P L K +L L N + L L ++L
Sbjct: 16 NCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 5e-05
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 4/132 (3%)
Query: 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG----SFPLTLTSCMFLTAIRL 258
++ +L+++ A L + L + T L L + L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 259 SGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIP 318
N++ + +L + I +L N + L H +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 319 DENQITISSYAF 330
+
Sbjct: 123 LLGDAGLQLLCE 134
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 9e-05
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 332 NLVVLGIGNCEIK-GQIPTWLGKLKKLQVLDLGSNQITG----PIPGWLGNMPNLFYIDL 386
++ L I E+ + L L++ QV+ L +T I L P L ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 387 SYNSISGEFPKEFC 400
N +
Sbjct: 63 RSNELGDVGVHCVL 76
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 9/129 (6%)
Query: 283 NNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCE 342
+ + + ++ + L E L VL + +C+
Sbjct: 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380
Query: 343 IKGQ----IPTWLGKLKKLQVLDLGSNQITGPIPGWLG-----NMPNLFYIDLSYNSISG 393
+ + L L+ LDL +N + L L + L S
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440
Query: 394 EFPKEFCGL 402
E L
Sbjct: 441 EMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.001
Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 179 NLKSLKLHTNSLSGF-LPQFLMNCTNLITLNLRINNFRGDLS---AYNFSTLHNLHTIDL 234
+++SL + LS + L + L + L ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 235 GNNNFTGSFPLTLTSCMFLTAIRL 258
+N + + + ++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKI 86
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 16/118 (13%)
Query: 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGI 338
L + + +L+ + L + L L N++ A L L +
Sbjct: 2 VLHLAHKDLTVLCH----LEQLLLVTHLDL----------SHNRLRALPPALAALRCLEV 47
Query: 339 GNCEIKGQI-PTWLGKLKKLQVLDLGSNQITG-PIPGWLGNMPNLFYIDLSYNSISGE 394
+ L +LQ L L +N++ L + P L ++L NS+ E
Sbjct: 48 LQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.001
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 358 QVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGN 417
+VL L +T + L + + ++DLS+N + P AL +
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP---------ALAALRCLEVLQ 49
Query: 418 QLQLPLFVPETKCALYNQQYNKLFSLPPAIYLRNNGLNGSIPIE-IGNVMFLHVLDLSLN 476
L + L Q + L NN L S I+ + + L +L+L N
Sbjct: 50 ASDNALENVDGVANLPRLQE---------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100
Query: 477 NFS 479
+
Sbjct: 101 SLC 103
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.2 bits (83), Expect = 0.002
Identities = 16/94 (17%), Positives = 31/94 (32%)
Query: 67 SIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQT 126
++ +L + HL+LSHN L L P++ L L+ + +
Sbjct: 11 TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQEL 70
Query: 127 FRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSG 160
+ + + L ++L N L
Sbjct: 71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 40 CCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLS 99
+++ I L LN+S+N L L P L
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE 307
Query: 100 ILDFSHNYFRGHCQLPSGLGNFSKL 124
L S N+ ++P N +L
Sbjct: 308 RLIASFNHLA---EVPELPQNLKQL 329
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 29 NPPLNWSFSTDCCLWEGIKCDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHL 88
P N + CD + L + + L L L S NHL
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHL 316
Query: 89 SFLSPSVPFLSILDFSHNYFRGHCQLPSGLGN 120
+ + L L +N R +P + +
Sbjct: 317 AEVPELPQNLKQLHVEYNPLREFPDIPESVED 348
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 14/145 (9%)
Query: 257 RLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEA 316
L ++E Q+ + S +++ L + L+ +L
Sbjct: 3 ELKPEQVE-QLKLIMSKRYDGSQQALDLKGLRSDPD----LVAQNIDVVLNRRSSMA--- 54
Query: 317 IPDENQITISSYAFQNLVVLGIGNCEIKGQ--IPTWLGKLKKLQVLDLGSNQITGPIPGW 374
+ I L+ L + N + + + + K L++L+L N++
Sbjct: 55 ----ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 110
Query: 375 LGNMPNLFYIDLSYNSISGEFPKEF 399
L + L NS+S F +
Sbjct: 111 KIKGLKLEELWLDGNSLSDTFRDQS 135
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.002
Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 25/205 (12%)
Query: 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN 236
LA L +++ + Q + + TL + S L+NL I+ N
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 71
Query: 237 NNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGI 296
N T PL + + + + ++ +N I
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANL--------TNLTGLTLFNNQITDIDP 123
Query: 297 LMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKK 356
L NL L L + ++ F + ++ P L L
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSS--------NQVTDLKP--LANLTT 173
Query: 357 LQVLDLGSNQITGPIPGWLGNMPNL 381
L+ LD+ SN+++ L + NL
Sbjct: 174 LERLDISSNKVSDISV--LAKLTNL 196
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 36.8 bits (83), Expect = 0.004
Identities = 47/296 (15%), Positives = 88/296 (29%), Gaps = 38/296 (12%)
Query: 137 SIPDDVSAAASLEDISLPVNQLSG----AISNGVVNLTSLNIGKLANLKSLKLHTNSLS- 191
S+ + S+++I L N + +S + + L I + +++ + ++
Sbjct: 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81
Query: 192 -GFLPQFLMNCTNLITLNLRINNFRGDLSAYNFS-----------------------TLH 227
L Q L+ C L T+ L N F
Sbjct: 82 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141
Query: 228 NLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNL 287
+L N + P + + K + + L +V +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201
Query: 288 SNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQI 347
+ L C+ L++L L F I + S+ + L +G
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261
Query: 348 PTW----LGKLKKLQVLDLGSNQITGPIPGWL-----GNMPNLFYIDLSYNSISGE 394
+ LQ L L N+I L MP+L +++L+ N S E
Sbjct: 262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.9 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.74 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.55 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.49 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.48 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.44 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.08 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.12 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.93 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.72 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.72 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.03 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.96 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=6e-37 Score=287.65 Aligned_cols=290 Identities=27% Similarity=0.439 Sum_probs=189.1
Q ss_pred cChhhHHHHHHhHhcCCCCC--CCCCCCCCCc--cceeEEeCCCC---CEEEEECCCCCccc--cccccccCCCCCCeee
Q 047549 12 CNQIDQETLLSLNFNASNPP--LNWSFSTDCC--LWEGIKCDSEA---QVTHLWLPDRGLRG--SIYPFTGKLTHLCHLN 82 (479)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~--~~w~~~~~~c--~w~~v~c~~~~---~l~~L~l~~~~l~~--~~~~~l~~l~~L~~L~ 82 (479)
|.++|++||++||+.+.++. ..|..+.||| .|.||+|+..+ ||++|+|+++++.| .+|+.++++++|++|+
T Consensus 3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~ 82 (313)
T d1ogqa_ 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccc
Confidence 78999999999999998775 7899899999 49999998643 79999999998887 4667777777777777
Q ss_pred cCC-CcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCccccc
Q 047549 83 LSH-NHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGA 161 (479)
Q Consensus 83 L~~-n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 161 (479)
|++ |++++ .+|..++++++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.
T Consensus 83 Ls~~N~l~g----------------------~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~ 140 (313)
T d1ogqa_ 83 IGGINNLVG----------------------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp EEEETTEES----------------------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccccccccc----------------------ccccccccccccchhhhccccccccccccccchhhhccccccccccccc
Confidence 764 44432 4566677777777777777777666666666666666666666655554
Q ss_pred CCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccc
Q 047549 162 ISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTG 241 (479)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 241 (479)
+|..+ ..++.++++++++|.+++.+|..+..+..+ ++.+++++|++++
T Consensus 141 ~p~~l--------~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l------------------------~~~l~~~~n~l~~ 188 (313)
T d1ogqa_ 141 LPPSI--------SSLPNLVGITFDGNRISGAIPDSYGSFSKL------------------------FTSMTISRNRLTG 188 (313)
T ss_dssp CCGGG--------GGCTTCCEEECCSSCCEEECCGGGGCCCTT------------------------CCEEECCSSEEEE
T ss_pred Cchhh--------ccCcccceeecccccccccccccccccccc------------------------ccccccccccccc
Confidence 44432 234445555555555554444444443332 2455555555555
Q ss_pred cCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCc
Q 047549 242 SFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDEN 321 (479)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 321 (479)
..|..+..+.. ..++++.+...+..|..+..+++++.++++++.+...+ ..+.
T Consensus 189 ~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~---~~~~----------------------- 241 (313)
T d1ogqa_ 189 KIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL---GKVG----------------------- 241 (313)
T ss_dssp ECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG---GGCC-----------------------
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccc---cccc-----------------------
Confidence 55555544433 35666666666666655555566666666655544211 1111
Q ss_pred cccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCc
Q 047549 322 QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNS 390 (479)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 390 (479)
.+++|++|++++|++++.+|..++++++|++|+|++|+++|.+|. +.++++|+.+++++|+
T Consensus 242 -------~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 242 -------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp -------CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred -------cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 234566777777777777777777777777777777777766664 4566777777777776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=7.9e-26 Score=217.63 Aligned_cols=328 Identities=23% Similarity=0.286 Sum_probs=237.0
Q ss_pred CCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC--CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEE
Q 047549 51 EAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP--SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFR 128 (479)
Q Consensus 51 ~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~ 128 (479)
..++++|++++++++.. +.+..+++|++|++++|+++++++ ..++|++|++++|.+.+ ++ .++.+++|+.|+
T Consensus 43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~---i~-~l~~l~~L~~L~ 116 (384)
T d2omza2 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD---IT-PLANLTNLTGLT 116 (384)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC---CG-GGTTCTTCCEEE
T ss_pred hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCccccCCccccccccccccccc---cc-cccccccccccc
Confidence 34799999999998753 568889999999999999998863 34899999999999874 33 478899999999
Q ss_pred ccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccC-----------CCCCCCCCCCCEEEccCCcCccccchh
Q 047549 129 AGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLT-----------SLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 129 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
++++.+++..+ ......+.......+.+....+....... ...+...+.........+... ....
T Consensus 117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 192 (384)
T d2omza2 117 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DISV 192 (384)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCGG
T ss_pred ccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--cccc
Confidence 99988874332 33445666666655544322211110000 001233334444444444433 3455
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++++.+++++|.+.+ ++ .+..+++|++|++++|.++. + ..+..+++|+.+++++|.+++..+ +..+++|
T Consensus 193 ~~~l~~~~~l~l~~n~i~~-~~--~~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L 265 (384)
T d2omza2 193 LAKLTNLESLIATNNQISD-IT--PLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 265 (384)
T ss_dssp GGGCTTCSEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred cccccccceeeccCCccCC-CC--cccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccC
Confidence 6778889999999998873 33 24567889999999998874 3 357788899999999998887543 7778899
Q ss_pred CEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCC
Q 047549 278 SYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 357 (479)
+.+++++++++.++ .+..++.++.+.+..|.+.+... . ..+++++.|++++|++++.. .+..+++|
T Consensus 266 ~~L~l~~~~l~~~~----~~~~~~~l~~l~~~~n~l~~~~~--~------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L 331 (384)
T d2omza2 266 TELKLGANQISNIS----PLAGLTALTNLELNENQLEDISP--I------SNLKNLTYLTLYFNNISDIS--PVSSLTKL 331 (384)
T ss_dssp SEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCSCCGG--G------GGCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred CEeeccCcccCCCC----ccccccccccccccccccccccc--c------chhcccCeEECCCCCCCCCc--ccccCCCC
Confidence 99999998887654 36678888899998887765211 1 25678999999999988543 37888999
Q ss_pred CEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccc
Q 047549 358 QVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
++|++++|++++ ++ .+..+++|++|++++|++++..| +.++++|+.+++++|
T Consensus 332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 999999999874 33 58889999999999999986654 778888887766554
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=4.1e-27 Score=220.11 Aligned_cols=217 Identities=24% Similarity=0.365 Sum_probs=120.1
Q ss_pred CCCEEECCCCccccc--CCccccccCCCCCCCCCCCCEEEccC-CcCccccchhhhcCCCCCeeeccCCcCccccCcccc
Q 047549 147 SLEDISLPVNQLSGA--ISNGVVNLTSLNIGKLANLKSLKLHT-NSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNF 223 (479)
Q Consensus 147 ~L~~L~l~~n~l~~~--~~~~~~~l~~l~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 223 (479)
+++.|+++++.+.+. +|.. ++++++|++|++++ |++++.+|..++++++|++|++++|.+.+..+ ..+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~--------l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~ 121 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSS--------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFL 121 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGG--------GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGG
T ss_pred EEEEEECCCCCCCCCCCCChH--------HhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccc
Confidence 456666666655542 3343 33455666666654 55555566666666666666666666653333 245
Q ss_pred CCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC-CEEEccCCCCCCCCCccccccCCCC
Q 047549 224 STLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV-SYLSINNNNLSNITGAIGILMGCKN 302 (479)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~l~~~~~ 302 (479)
..+.+|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus 122 ~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~-------------- 187 (313)
T d1ogqa_ 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-------------- 187 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE--------------
T ss_pred cchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc--------------
Confidence 555666666666666655556666666666666666666655555555554443 45555555544
Q ss_pred CcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCc
Q 047549 303 LRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLF 382 (479)
Q Consensus 303 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 382 (479)
+..+.... . .....++++++...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+
T Consensus 188 ------------~~~~~~~~------~-l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~ 247 (313)
T d1ogqa_ 188 ------------GKIPPTFA------N-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLN 247 (313)
T ss_dssp ------------EECCGGGG------G-CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCC
T ss_pred ------------cccccccc------c-cccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 33332211 1 123345555555555555555556666666666666554333 355556666
Q ss_pred EEEccCCcccccCCccccCCcccc
Q 047549 383 YIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 383 ~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
+|++++|++++.+|+.|.++++|+
T Consensus 248 ~L~Ls~N~l~g~iP~~l~~L~~L~ 271 (313)
T d1ogqa_ 248 GLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCC
T ss_pred cccCccCeecccCChHHhCCCCCC
Confidence 666666666666666665555554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=1.7e-25 Score=215.21 Aligned_cols=335 Identities=21% Similarity=0.285 Sum_probs=216.1
Q ss_pred CCCCCccccccccccCCCCCCeeecCCCcCCCcC--CCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccccccc
Q 047549 59 LPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLS--PSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSG 136 (479)
Q Consensus 59 l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~ 136 (479)
+...++++.+. ...+.+|++|+++++.|+.+. ..+++|++|++++|+++ .+| .++++++|++|++++|.+.+
T Consensus 29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~---~l~-~l~~L~~L~~L~L~~n~i~~ 102 (384)
T d2omza2 29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT---DIT-PLKNLTKLVDILMNNNQIAD 102 (384)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC---CCG-GGTTCTTCCEEECCSSCCCC
T ss_pred hCCCCCCCccC--HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCC---CCc-cccCCccccccccccccccc
Confidence 33444444332 245678999999999888652 23488999999999988 454 48889999999999999874
Q ss_pred CCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccc-------------------hh
Q 047549 137 SIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLP-------------------QF 197 (479)
Q Consensus 137 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~-------------------~~ 197 (479)
++ .++++++|+.++++++.+++..+.. ....+.......+.+....+ ..
T Consensus 103 -i~-~l~~l~~L~~L~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (384)
T d2omza2 103 -IT-PLANLTNLTGLTLFNNQITDIDPLK----------NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 170 (384)
T ss_dssp -CG-GGTTCTTCCEEECCSSCCCCCGGGT----------TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG
T ss_pred -cc-ccccccccccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccchhhh
Confidence 33 3788899999999888777543321 23344444444443332111 11
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+...+.........|... .. ..+..+++++.+++++|.+++..| +..+++|++|++++|.++.. +.+..+++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~-~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L 243 (384)
T d2omza2 171 LANLTTLERLDISSNKVS--DI-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL 243 (384)
T ss_dssp GTTCTTCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hccccccccccccccccc--cc-cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhccccc
Confidence 222233333333333322 11 244566777777777777764433 35566777777777777653 346677777
Q ss_pred CEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCC
Q 047549 278 SYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKL 357 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 357 (479)
+.+++++|.+++++ .+..+++|+.|+++++.+.+..+. ..++.++.+++..|.+.+ + ..+..++++
T Consensus 244 ~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~~~l~~~~~~--------~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l 309 (384)
T d2omza2 244 TDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISPL--------AGLTALTNLELNENQLED-I-SPISNLKNL 309 (384)
T ss_dssp SEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGGG--------TTCTTCSEEECCSSCCSC-C-GGGGGCTTC
T ss_pred chhccccCccCCCC----cccccccCCEeeccCcccCCCCcc--------cccccccccccccccccc-c-cccchhccc
Confidence 77777777776543 256677777777777766543221 245567777777777764 2 346667777
Q ss_pred CEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccccccCCCCcccCccccccccccccccc
Q 047549 358 QVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKNRADGNQLQLPLFVPETKCALYNQQY 437 (479)
Q Consensus 358 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 437 (479)
+.|++++|++++.. .+..+++|++|++++|++++ ++ .+.++++|+.
T Consensus 310 ~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~------------------------------ 355 (384)
T d2omza2 310 TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINW------------------------------ 355 (384)
T ss_dssp SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCE------------------------------
T ss_pred CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCE------------------------------
Confidence 77777777777542 26667777777777777763 22 4566666643
Q ss_pred ccccCCCCeEEccCCcccccCChhhhcccccCeeeCCCCC
Q 047549 438 NKLFSLPPAIYLRNNGLNGSIPIEIGNVMFLHVLDLSLNN 477 (479)
Q Consensus 438 n~l~~~~~~l~ls~n~l~~~~~~~~~~~~~L~~L~ls~N~ 477 (479)
|++++|++++..| +.++++|+.|+|++|.
T Consensus 356 ---------L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 356 ---------LSAGHNQISDLTP--LANLTRITQLGLNDQA 384 (384)
T ss_dssp ---------EECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred ---------EECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence 7888999986554 8999999999999983
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=5.8e-24 Score=197.75 Aligned_cols=274 Identities=20% Similarity=0.255 Sum_probs=187.1
Q ss_pred CeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCC
Q 047549 79 CHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVN 156 (479)
Q Consensus 79 ~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 156 (479)
++++.++++++.+|+.. +.+++|++++|+++ .+|. .|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus 13 ~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~---~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 13 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp TEEECTTSCCCSCCCSCCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCccCCCCCCCCCEEECcCCcCC---CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 33444444444443333 45556666666655 4554 5788888999999988888666778888899999999888
Q ss_pred cccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc-ccCccccCCCCCCcEEEcc
Q 047549 157 QLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG-DLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 157 ~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~ 235 (479)
+++.. |.. ..+.++.|++.+|.+.+..+..+.....+..+++..|.... ......+..+++|+.++++
T Consensus 90 ~l~~l-~~~----------~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~ 158 (305)
T d1xkua_ 90 QLKEL-PEK----------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 158 (305)
T ss_dssp CCSBC-CSS----------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred ccCcC-ccc----------hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence 87743 322 24678888888888887767777777788888887775431 1222356777888888888
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
+|.+. .+|.. .+++|+.|++++|......+..+..++.++.|++++|.+++++.
T Consensus 159 ~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~----------------------- 212 (305)
T d1xkua_ 159 DTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----------------------- 212 (305)
T ss_dssp SSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-----------------------
T ss_pred cCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc-----------------------
Confidence 88776 44433 35678888888888777777777777777777777777664432
Q ss_pred cCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcc------cCCCCCCcEEEccCC
Q 047549 316 AIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGW------LGNMPNLFYIDLSYN 389 (479)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L~~N 389 (479)
..+ ..+++|++|++++|+++ .+|.++..+++|++|++++|+|+...... ....++|+.|+|++|
T Consensus 213 ---~~~------~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N 282 (305)
T d1xkua_ 213 ---GSL------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282 (305)
T ss_dssp ---TTG------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred ---ccc------cccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence 111 14567788888888877 56777888888888888888887543333 345678889999999
Q ss_pred ccc--ccCCccccCC
Q 047549 390 SIS--GEFPKEFCGL 402 (479)
Q Consensus 390 ~l~--~~~p~~~~~l 402 (479)
++. ...|.+|.-+
T Consensus 283 ~~~~~~~~~~~f~~~ 297 (305)
T d1xkua_ 283 PVQYWEIQPSTFRCV 297 (305)
T ss_dssp SSCGGGSCGGGGTTC
T ss_pred cCccCcCCHhHhccc
Confidence 875 2334444433
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=8.3e-24 Score=196.68 Aligned_cols=253 Identities=20% Similarity=0.256 Sum_probs=190.6
Q ss_pred CCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCC
Q 047549 123 KLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCT 202 (479)
Q Consensus 123 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 202 (479)
..++++.++..++ .+|..+. +++++|++++|+++...+.. |.++++|++|++++|.+....|..|..++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~--------f~~l~~L~~L~l~~n~~~~i~~~~f~~l~ 79 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD--------FKNLKNLHTLILINNKISKISPGAFAPLV 79 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhH--------hhccccccccccccccccccchhhhhCCC
Confidence 5678888888888 7777664 68999999999888655443 56788999999999999877788889999
Q ss_pred CCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc--cChhhhhccCCCCEE
Q 047549 203 NLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE--QISPTILALVSVSYL 280 (479)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L 280 (479)
+|+.|++++|++. .++. ...+.++.|++..|.+.+..+..+........++...|.... ..+..+..+++|+.+
T Consensus 80 ~L~~L~l~~n~l~-~l~~---~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l 155 (305)
T d1xkua_ 80 KLERLYLSKNQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155 (305)
T ss_dssp TCCEEECCSSCCS-BCCS---SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred ccCEecccCCccC-cCcc---chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcc
Confidence 9999999999887 5654 234678888888888876555556667777888888775432 334567778888888
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.+..++.. .+++|+.|++++|......+..+. .++.+++|++++|++.+..+.++.++++|++|
T Consensus 156 ~l~~n~l~~l~~~-----~~~~L~~L~l~~n~~~~~~~~~~~------~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L 224 (305)
T d1xkua_ 156 RIADTNITTIPQG-----LPPSLTELHLDGNKITKVDAASLK------GLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224 (305)
T ss_dssp ECCSSCCCSCCSS-----CCTTCSEEECTTSCCCEECTGGGT------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred ccccCCccccCcc-----cCCccCEEECCCCcCCCCChhHhh------ccccccccccccccccccccccccccccceee
Confidence 8888888766532 256788888888877665554332 55678888888888887777778888888888
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCC
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGL 402 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 402 (479)
+|++|+++ .+|..+..+++|++|++++|+|+......|...
T Consensus 225 ~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~ 265 (305)
T d1xkua_ 225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265 (305)
T ss_dssp ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred eccccccc-ccccccccccCCCEEECCCCccCccChhhccCc
Confidence 88888887 556778888888888888888885555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-23 Score=190.41 Aligned_cols=206 Identities=22% Similarity=0.205 Sum_probs=98.8
Q ss_pred CCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCC
Q 047549 147 SLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTL 226 (479)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 226 (479)
.+++|++++|.++...+.. |.++++|++|++++|.+....+..+..++.++.+.+..+.....++...+..+
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~--------f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 104 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAAS--------FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (284)
T ss_dssp TCSEEECTTSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCCEEECcCCcCCCCCHHH--------hhccccccccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 3445555555444333222 33445555555555555544444445555555554432222223433445555
Q ss_pred CCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEE
Q 047549 227 HNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRML 306 (479)
Q Consensus 227 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L 306 (479)
++|++|++++|.+....+..+...++|+.+++++|.++++.+..|..+++|+.|++++|.++.++. ..+..+++|+.+
T Consensus 105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~--~~f~~l~~L~~l 182 (284)
T d1ozna_ 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRL 182 (284)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEE
T ss_pred ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch--hhhccccccchh
Confidence 555566665555554444445555556666666666655555555555555566665555554332 223333333333
Q ss_pred EccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccc
Q 047549 307 LLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQIT 368 (479)
Q Consensus 307 ~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 368 (479)
++++|.+.+..|..+. .+++|++|++++|++.+..+..|..+++|++|++++|.+.
T Consensus 183 ~l~~N~l~~i~~~~f~------~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 183 LLHQNRVAHVHPHAFR------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp ECCSSCCCEECTTTTT------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hhhhccccccChhHhh------hhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 3333333333222221 3344555555555555444445555555555555555544
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.1e-23 Score=189.10 Aligned_cols=220 Identities=20% Similarity=0.187 Sum_probs=100.7
Q ss_pred ECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccC
Q 047549 58 WLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGS 137 (479)
Q Consensus 58 ~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~ 137 (479)
+.++.+++ .+|..+. +++++|+|++|.++.+++. .+.++++|++|++++|++...
T Consensus 17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~----------------------~f~~l~~L~~L~ls~n~l~~i 71 (284)
T d1ozna_ 17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAA----------------------SFRACRNLTILWLHSNVLARI 71 (284)
T ss_dssp ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTT----------------------TTTTCTTCCEEECCSSCCCEE
T ss_pred EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHH----------------------Hhhcccccccccccccccccc
Confidence 34444554 3344332 3556666666666554432 344444444444444444444
Q ss_pred CCccCCCCCCCCEEECCC-CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCcc
Q 047549 138 IPDDVSAAASLEDISLPV-NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRG 216 (479)
Q Consensus 138 ~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 216 (479)
.+..+..+..++.+.... +.++...+.. +.++++|++|++++|.+....+..+...++|+.+++++|.++
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~- 142 (284)
T d1ozna_ 72 DAAAFTGLALLEQLDLSDNAQLRSVDPAT--------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ- 142 (284)
T ss_dssp CTTTTTTCTTCCEEECCSCTTCCCCCTTT--------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ccccccccccccccccccccccccccchh--------hcccccCCEEecCCcccccccccccchhcccchhhhcccccc-
Confidence 344444444444444332 2222221211 333444555555554444333444444444555555555544
Q ss_pred ccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCcccc
Q 047549 217 DLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGI 296 (479)
Q Consensus 217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 296 (479)
.++...|..+++|++|++++|.+++..+..+..+++|+.+++++|.+++..|..|..+++|++|++++|++.+++. ..
T Consensus 143 ~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~--~~ 220 (284)
T d1ozna_ 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT--EA 220 (284)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH--HH
T ss_pred ccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc--cc
Confidence 3333344444455555555555544444444445555555555555554444455555555555555555543332 23
Q ss_pred ccCCCCCcEEEccCccc
Q 047549 297 LMGCKNLRMLLLCKIFF 313 (479)
Q Consensus 297 l~~~~~L~~L~l~~n~~ 313 (479)
+..+++|+.|++++|.+
T Consensus 221 ~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 221 LAPLRALQYLRLNDNPW 237 (284)
T ss_dssp HTTCTTCCEEECCSSCE
T ss_pred cccccccCEEEecCCCC
Confidence 33444444444444443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9.8e-22 Score=178.45 Aligned_cols=144 Identities=21% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccC
Q 047549 252 FLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQ 331 (479)
Q Consensus 252 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 331 (479)
++++|++++|.+++..+..|..+++|++|++++|.++.++ .++.+++|+.|++++|.+....+ .. ..++
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~----~~~~l~~L~~L~Ls~N~l~~~~~-~~------~~l~ 100 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----VDGTLPVLGTLDLSHNQLQSLPL-LG------QTLP 100 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE----CCSCCTTCCEEECCSSCCSSCCC-CT------TTCT
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc----ccccccccccccccccccccccc-cc------cccc
Confidence 3444444444444433344444444444444444444332 12334444444444444433211 11 1334
Q ss_pred CccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 332 NLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 332 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
+|++|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|++++..++.|..+++|+
T Consensus 101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~ 175 (266)
T d1p9ag_ 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (266)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence 555555555555444444445555555555555555544444445555555555555555544444455555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.9e-21 Score=174.47 Aligned_cols=197 Identities=24% Similarity=0.261 Sum_probs=80.8
Q ss_pred eCCCCCEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCC----CCCCCEEEcCCcccccCCCCCCcCCCCCC
Q 047549 48 CDSEAQVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPS----VPFLSILDFSHNYFRGHCQLPSGLGNFSK 123 (479)
Q Consensus 48 c~~~~~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~L~~L~L~~n~l~~~~~l~~~~~~l~~ 123 (479)
|.......+++-++++++. +|+.+. +++++|+|++|.++++++. .++|++|++++|.++ .+| .++.+++
T Consensus 6 ~~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~---~l~-~~~~l~~ 78 (266)
T d1p9ag_ 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQ-VDGTLPV 78 (266)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC---EEE-CCSCCTT
T ss_pred EcccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc---ccc-ccccccc
Confidence 3333444445555555553 344332 3455555555555544321 134444444444443 122 1233444
Q ss_pred CcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCC
Q 047549 124 LQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTN 203 (479)
Q Consensus 124 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 203 (479)
|++|++++|++. ..+..+..+++|++|+++++.+....+.. +..+.++++|++++|.++...+..+..+++
T Consensus 79 L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~ 149 (266)
T d1p9ag_ 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA--------LRGLGELQELYLKGNELKTLPPGLLTPTPK 149 (266)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST--------TTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccccccccc-ccccccccccccccccccccccceeeccc--------cccccccccccccccccceecccccccccc
Confidence 444444444444 22333444444444444444333222211 223334444444444444333333333444
Q ss_pred CCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCc
Q 047549 204 LITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNK 262 (479)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 262 (479)
++.+++++|+++ .++...+..+++|++|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 150 l~~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred chhccccccccc-ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 444444444443 222223333444444444444443 333333334444444444443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.85 E-value=7.7e-19 Score=165.98 Aligned_cols=302 Identities=23% Similarity=0.253 Sum_probs=187.2
Q ss_pred CEEEEECCCCCccccccccccCCCCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 53 QVTHLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++++|++++++++. +|+. .++|++|++++|+++.++....+|+.|++++|.++. ++.. .+.|++|++++|
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~---l~~l---p~~L~~L~L~~n 108 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA---LSDL---PPLLEYLGVSNN 108 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC---CCSC---CTTCCEEECCSS
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCcccccchhhhhhhhhhhcccch---hhhh---cccccccccccc
Confidence 68899999999984 5653 578999999999999887777899999999999883 4321 146999999999
Q ss_pred ccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCC
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRIN 212 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 212 (479)
.+. .+|. +..+++|++|+++++.+..... ....+..+.+..+.... ...+..++.++.++++.|
T Consensus 109 ~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~------------~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n 172 (353)
T d1jl5a_ 109 QLE-KLPE-LQNSSFLKIIDVDNNSLKKLPD------------LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNN 172 (353)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSS
T ss_pred ccc-cccc-hhhhccceeecccccccccccc------------ccccccchhhccccccc--cccccccccceecccccc
Confidence 998 6664 6789999999999988764322 13445566665554432 233555667777777776
Q ss_pred cCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCC
Q 047549 213 NFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITG 292 (479)
Q Consensus 213 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 292 (479)
... .++. .....+.+...++.+. .++ .+..++.|+.+++++|..... +. ...++..+.+..+.+...+.
T Consensus 173 ~~~-~~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~-~~---~~~~l~~~~~~~~~~~~~~~ 241 (353)
T d1jl5a_ 173 SLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPE 241 (353)
T ss_dssp CCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCC
T ss_pred ccc-cccc----cccccccccccccccc-ccc-ccccccccccccccccccccc-cc---cccccccccccccccccccc
Confidence 654 2221 1223344444444433 222 244556666666666655432 21 23445566666655543322
Q ss_pred ccccccCCCCCcEEEccCccccccC--CCC-c-------cccccccccCCccEEEeeCCcceecCchhhcCCCCCCEEeC
Q 047549 293 AIGILMGCKNLRMLLLCKIFFHEAI--PDE-N-------QITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDL 362 (479)
Q Consensus 293 ~~~~l~~~~~L~~L~l~~n~~~~~~--~~~-~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 362 (479)
. .+.+....+..+.+.+.. +.. . .+......+++|++|++++|+++ .+|.. +++|+.|++
T Consensus 242 ~------~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L 311 (353)
T d1jl5a_ 242 L------PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIA 311 (353)
T ss_dssp C------CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred c------cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEEC
Confidence 1 122222222222211100 000 0 00000124578999999999887 45543 578889999
Q ss_pred CCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccc
Q 047549 363 GSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALA 406 (479)
Q Consensus 363 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 406 (479)
++|+++ .+|.. +++|++|++++|+++ .+|+....++.|+
T Consensus 312 ~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L~ 350 (353)
T d1jl5a_ 312 SFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR 350 (353)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred CCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCeeE
Confidence 999888 45542 467889999999987 6676555555554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=7.1e-18 Score=159.23 Aligned_cols=201 Identities=23% Similarity=0.238 Sum_probs=146.1
Q ss_pred CCCCeeecCCCcCCCcCCCCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCC
Q 047549 76 THLCHLNLSHNHLSFLSPSVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPV 155 (479)
Q Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 155 (479)
.++++|||+++.++.++...++|++|++++|+++ .+|..+ .+|+.|++++|.++ .++.. .+.|++|++++
T Consensus 38 ~~l~~LdLs~~~L~~lp~~~~~L~~L~Ls~N~l~---~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~ 107 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPELPPHLESLVASCNSLT---ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSN 107 (353)
T ss_dssp HTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCS---SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCS
T ss_pred cCCCEEEeCCCCCCCCCCCCCCCCEEECCCCCCc---ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccccc
Confidence 4799999999999988766689999999999998 677654 57899999999987 44432 24699999999
Q ss_pred CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEcc
Q 047549 156 NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLG 235 (479)
Q Consensus 156 n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 235 (479)
|.+... |. ++.+++|++|+++++.++... . ....+..+.+..+... .. ..+..++.++.+++.
T Consensus 108 n~l~~l-p~---------~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~-~~--~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 108 NQLEKL-PE---------LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLE-EL--PELQNLPFLTAIYAD 170 (353)
T ss_dssp SCCSSC-CC---------CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCS-SC--CCCTTCTTCCEEECC
T ss_pred cccccc-cc---------hhhhccceeeccccccccccc-c---ccccccchhhcccccc-cc--ccccccccceecccc
Confidence 988743 32 456889999999999887432 2 2456777777766554 22 256778899999999
Q ss_pred CCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccc
Q 047549 236 NNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHE 315 (479)
Q Consensus 236 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (479)
+|.... .+.. ....+.+...++.+... ..+..++.++.+++++|....++. ...++..+.+..+.+..
T Consensus 171 ~n~~~~-~~~~---~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~~------~~~~l~~~~~~~~~~~~ 238 (353)
T d1jl5a_ 171 NNSLKK-LPDL---PLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD 238 (353)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC
T ss_pred cccccc-cccc---ccccccccccccccccc--cccccccccccccccccccccccc------ccccccccccccccccc
Confidence 988763 2322 23345677776665442 235678899999999998775543 34567778887776654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=9.2e-18 Score=148.14 Aligned_cols=188 Identities=27% Similarity=0.366 Sum_probs=108.1
Q ss_pred hcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCC
Q 047549 199 MNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVS 278 (479)
Q Consensus 199 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 278 (479)
..+.+|+.|++.+|.++ .++ .+..+++|++|++++|.+++.. .+..+++++++++++|.++.. ..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~ 110 (227)
T d1h6ua2 38 ADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (227)
T ss_dssp HHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHcCCcCEEECCCCCCC-cch--hHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccc
Confidence 34455555555555554 332 3455555555555555555322 245555566666666555432 2345556666
Q ss_pred EEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCC
Q 047549 279 YLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQ 358 (479)
Q Consensus 279 ~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 358 (479)
.++++++...... .+...+.++.+.++.+.+....+. ..+++|+.|++++|.+.+. ..++++++|+
T Consensus 111 ~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~ 176 (227)
T d1h6ua2 111 TLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISPL--------AGLTNLQYLSIGNAQVSDL--TPLANLSKLT 176 (227)
T ss_dssp EEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGGG--------GGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred ccccccccccccc----hhccccchhhhhchhhhhchhhhh--------ccccccccccccccccccc--hhhcccccce
Confidence 6666655554332 234455566666655544332211 2456677777777777632 2367777888
Q ss_pred EEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 359 VLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 359 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
+|++++|++++ ++ .++.+++|++|++++|++++..| +.+++.|+.++++
T Consensus 177 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls 225 (227)
T d1h6ua2 177 TLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (227)
T ss_dssp EEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred ecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence 88888887764 33 36777788888888887774432 6677777766554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.8e-20 Score=180.77 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=79.7
Q ss_pred CEEEEECCCCCcccc-ccccccCCCCCCeeecCCCcCCCcC--------CCCCCCCEEEcCCcccccC--CCCCCcCC-C
Q 047549 53 QVTHLWLPDRGLRGS-IYPFTGKLTHLCHLNLSHNHLSFLS--------PSVPFLSILDFSHNYFRGH--CQLPSGLG-N 120 (479)
Q Consensus 53 ~l~~L~l~~~~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~--------~~~~~L~~L~L~~n~l~~~--~~l~~~~~-~ 120 (479)
+++.||++.+++++. +...+..++++++|+|++|.++... ...++|++|||++|.++.. ..+...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 589999999999763 2344567889999999999887421 2348899999999988521 01223333 2
Q ss_pred CCCCcEEEccccccccC----CCccCCCCCCCCEEECCCCcccc
Q 047549 121 FSKLQTFRAGFSYLSGS----IPDDVSAAASLEDISLPVNQLSG 160 (479)
Q Consensus 121 l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~ 160 (479)
..+|++|++++|++++. ++..+..+++|++|++++|.++.
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence 35799999999998743 44567788999999999998764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.7e-17 Score=146.70 Aligned_cols=203 Identities=15% Similarity=0.102 Sum_probs=111.7
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccC-CcccccCCccCcCCCCCCEEE
Q 047549 179 NLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGN-NNFTGSFPLTLTSCMFLTAIR 257 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 257 (479)
++++|++++|+++...+..|.++++|++|++++|.+...++...|..++.++++.+.. |.+....+..+..+++|+.++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4555555555555433334555555555555555544333333444455555554432 333333334444444555555
Q ss_pred ccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEE
Q 047549 258 LSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337 (479)
Q Consensus 258 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~ 337 (479)
+++|. +...+. ...+..++.+..+...++.+....+..+. .....++.++
T Consensus 110 l~~~~------------------------l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~~-----~~~~~l~~L~ 159 (242)
T d1xwdc1 110 ISNTG------------------------IKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFV-----GLSFESVILW 159 (242)
T ss_dssp EESCC------------------------CCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTSST-----TSBSSCEEEE
T ss_pred cchhh------------------------hccccc-ccccccccccccccccccccccccccccc-----cccccceeee
Confidence 54444 443221 11122223333333333333222222111 1224688899
Q ss_pred eeCCcceecCchhhcCCCCCCEE-eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCcccccccccc
Q 047549 338 IGNCEIKGQIPTWLGKLKKLQVL-DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAKN 412 (479)
Q Consensus 338 l~~n~l~~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~~ 412 (479)
+++|+++...+..+ ...+++++ ++++|.++...+..|..+++|++|++++|+++...+..|.+++.|+.+++.+
T Consensus 160 l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 160 LNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred cccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 99999885444444 44555444 5788888865566789999999999999999966667789999888776543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=3.7e-17 Score=144.22 Aligned_cols=185 Identities=21% Similarity=0.305 Sum_probs=103.7
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
.+|++|++.+|.++ .+ +.++++++|++|++++|.+.+.. .+.++++++++++++|.++.. +. +.
T Consensus 41 ~~L~~L~l~~~~i~---~l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i-~~---------l~ 104 (227)
T d1h6ua2 41 DGITTLSAFGTGVT---TI-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV-SA---------IA 104 (227)
T ss_dssp HTCCEEECTTSCCC---CC-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC-GG---------GT
T ss_pred CCcCEEECCCCCCC---cc-hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc-cc---------cc
Confidence 45555555555554 33 24566666777777666665322 256666666666666654421 11 34
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.+++|+.++++++...+. ..+...+.++.+.++.+.+.. .. .+..+++|++|++++|.+++. ..+..+++|++
T Consensus 105 ~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~ 177 (227)
T d1h6ua2 105 GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN-IS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTT 177 (227)
T ss_dssp TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred cccccccccccccccccc--chhccccchhhhhchhhhhch-hh--hhccccccccccccccccccc--hhhccccccee
Confidence 556666666666655532 224445666666666665542 11 344566666666666665532 23556666666
Q ss_pred EEccCCcccccChhhhhccCCCCEEEccCCCCCCCCCccccccCCCCCcEEEcc
Q 047549 256 IRLSGNKIEEQISPTILALVSVSYLSINNNNLSNITGAIGILMGCKNLRMLLLC 309 (479)
Q Consensus 256 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l~ 309 (479)
|++++|++++.. .+..+++|++|++++|+++++++ +..+++|+.|+++
T Consensus 178 L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~----l~~l~~L~~L~ls 225 (227)
T d1h6ua2 178 LKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLT 225 (227)
T ss_dssp EECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEE
T ss_pred cccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc----cccCCCCCEEEee
Confidence 666666665532 25666666677776666665432 4455555555553
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.9e-16 Score=137.54 Aligned_cols=164 Identities=27% Similarity=0.313 Sum_probs=75.5
Q ss_pred CCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEE
Q 047549 201 CTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYL 280 (479)
Q Consensus 201 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 280 (479)
+.+|++|++++|.+. .++ .+..+++|++|++++|++++. + .++.+++|+.|++++|++++. + .+..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred hcCccEEECcCCCCC-Cch--hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-ccccccccccc
Confidence 344555555555544 222 234455555555555555432 1 234445555555555555432 1 24444555555
Q ss_pred EccCCCCCCCCCccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceecCchhhcCCCCCCEE
Q 047549 281 SINNNNLSNITGAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQIPTWLGKLKKLQVL 360 (479)
Q Consensus 281 ~L~~n~l~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 360 (479)
++++|.+..++ .+..+ ++++.+++++|.+++ +..+..+++|+++
T Consensus 118 ~l~~~~~~~~~----~l~~l------------------------------~~l~~l~~~~n~l~~--~~~~~~l~~L~~l 161 (210)
T d1h6ta2 118 SLEHNGISDIN----GLVHL------------------------------PQLESLYLGNNKITD--ITVLSRLTKLDTL 161 (210)
T ss_dssp ECTTSCCCCCG----GGGGC------------------------------TTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred ccccccccccc----ccccc------------------------------ccccccccccccccc--ccccccccccccc
Confidence 55555443221 12233 344455555554442 1224445555555
Q ss_pred eCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccccc
Q 047549 361 DLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQEAK 411 (479)
Q Consensus 361 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~~~ 411 (479)
++++|++.+. + .+.++++|++|++++|+++. +| .+.++++|+.|+++
T Consensus 162 ~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 162 SLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred cccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 5555555432 1 24455555555555555542 22 35555555555543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.6e-19 Score=174.47 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=76.5
Q ss_pred CCCeeecCCCcCCCc-----CCCCCCCCEEEcCCcccccC--CCCCCcCCCCCCCcEEEcccccccc----CCCccCC-C
Q 047549 77 HLCHLNLSHNHLSFL-----SPSVPFLSILDFSHNYFRGH--CQLPSGLGNFSKLQTFRAGFSYLSG----SIPDDVS-A 144 (479)
Q Consensus 77 ~L~~L~L~~n~l~~~-----~~~~~~L~~L~L~~n~l~~~--~~l~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~-~ 144 (479)
+|++||++++++++. .+..+++++|+|++|.++.. ..++..+..+++|++|++++|.++. .+.+.+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 578899999988753 34448899999999987521 1334456788889999999988753 2223332 2
Q ss_pred CCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCcc
Q 047549 145 AASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSG 192 (479)
Q Consensus 145 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~ 192 (479)
..+|++|++++|+++......+.. .+..+++|++|++++|.++.
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~----~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSS----TLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHH----HTTSCTTCCEEECCSSBCHH
T ss_pred CCCCCEEECCCCCccccccccccc----hhhccccccccccccccchh
Confidence 357899999988877543222221 14567889999999888764
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.6e-16 Score=141.66 Aligned_cols=200 Identities=14% Similarity=0.121 Sum_probs=94.3
Q ss_pred CeeecCCCcCCCcCCCC-CCCCEEEcCCcccccCCCCCC-cCCCCCCCcEEEccccccccCC-CccCCCCCCCCEEECCC
Q 047549 79 CHLNLSHNHLSFLSPSV-PFLSILDFSHNYFRGHCQLPS-GLGNFSKLQTFRAGFSYLSGSI-PDDVSAAASLEDISLPV 155 (479)
Q Consensus 79 ~~L~L~~n~l~~~~~~~-~~L~~L~L~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~ 155 (479)
++++.++..++.++... +++++|++++|.++ .+|. .|.++++|++|++++|.+...+ +..|..++.++++.+..
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~---~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSCCSEEEEESCCCC---EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC---ccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 45666666666555544 35666666666665 3443 4566666666666666654333 23455566666665543
Q ss_pred -CcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccch-hhhcCCCCCeeeccCCcCccccCccccCCC-CCCcEE
Q 047549 156 -NQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQ-FLMNCTNLITLNLRINNFRGDLSAYNFSTL-HNLHTI 232 (479)
Q Consensus 156 -n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L 232 (479)
+.+....+.. |..+++|+++++++|.++...+. .+..+..+..+...++.+. .++...+..+ ..++.+
T Consensus 88 ~n~l~~~~~~~--------~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L 158 (242)
T d1xwdc1 88 ANNLLYINPEA--------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVIL 158 (242)
T ss_dssp CTTCCEECTTS--------EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEE
T ss_pred ccccccccccc--------ccccccccccccchhhhcccccccccccccccccccccccccc-cccccccccccccceee
Confidence 3333333322 33455566666666555432211 1222333333333444443 3333333333 245555
Q ss_pred EccCCcccccCCccCcCCCCCCEE-EccCCcccccChhhhhccCCCCEEEccCCCCCCCC
Q 047549 233 DLGNNNFTGSFPLTLTSCMFLTAI-RLSGNKIEEQISPTILALVSVSYLSINNNNLSNIT 291 (479)
Q Consensus 233 ~l~~n~l~~~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 291 (479)
++.+|+++.. +......+++..+ .+++|.++...+..|.++++|++|++++|++++++
T Consensus 159 ~l~~n~l~~i-~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 217 (242)
T d1xwdc1 159 WLNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217 (242)
T ss_dssp ECCSSCCCEE-CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred eccccccccc-ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence 5555555422 2222223333322 33444454433344445555555555555554443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=4.6e-16 Score=133.90 Aligned_cols=147 Identities=24% Similarity=0.345 Sum_probs=67.2
Q ss_pred CCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCC
Q 047549 96 PFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIG 175 (479)
Q Consensus 96 ~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~ 175 (479)
+++++|++++|.++ .+ ..++.+++|++|++++|++++. + .+.++++|++|++++|.+....+ +.
T Consensus 40 ~~l~~L~l~~~~i~---~l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~~~----------l~ 103 (199)
T d2omxa2 40 DQVTTLQADRLGIK---SI-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADITP----------LA 103 (199)
T ss_dssp TTCCEEECTTSCCC---CC-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG----------GT
T ss_pred cCCCEEECCCCCCC---Cc-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccccccc----------cc
Confidence 44555555555544 22 2345555666666666655532 2 14555555555555554432110 23
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCE
Q 047549 176 KLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTA 255 (479)
Q Consensus 176 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 255 (479)
.++.|+.|+++++.+... ..+..+++|+.|++++|.+. .++ .+..++++++|++.+|++++. + .+..+++|++
T Consensus 104 ~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~ 176 (199)
T d2omxa2 104 NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLER 176 (199)
T ss_dssp TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred cccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCC-c-cccCCCCCCE
Confidence 445555555555544421 22444455555555555443 222 234444444555444444421 1 2344444444
Q ss_pred EEccCCcccc
Q 047549 256 IRLSGNKIEE 265 (479)
Q Consensus 256 L~l~~n~l~~ 265 (479)
|++++|++++
T Consensus 177 L~ls~N~i~~ 186 (199)
T d2omxa2 177 LDISSNKVSD 186 (199)
T ss_dssp EECCSSCCCC
T ss_pred EECCCCCCCC
Confidence 4444444433
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=5.2e-16 Score=134.74 Aligned_cols=100 Identities=29% Similarity=0.453 Sum_probs=42.1
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSV 277 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 277 (479)
+..+++|+.|++++|.+. .++ .+..++.++.+++++|.+++ +..+..+++|+.+++++|.+++.. .+.++++|
T Consensus 108 l~~l~~L~~L~l~~~~~~-~~~--~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L 180 (210)
T d1h6ta2 108 LKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKL 180 (210)
T ss_dssp GTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred cccccccccccccccccc-ccc--cccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCC
Confidence 333444444444444432 221 23334444444444444431 122334444555555555444321 14444555
Q ss_pred CEEEccCCCCCCCCCccccccCCCCCcEEEc
Q 047549 278 SYLSINNNNLSNITGAIGILMGCKNLRMLLL 308 (479)
Q Consensus 278 ~~L~L~~n~l~~~~~~~~~l~~~~~L~~L~l 308 (479)
+.|++++|++++++ .+..+++|++|++
T Consensus 181 ~~L~Ls~N~i~~l~----~l~~l~~L~~L~L 207 (210)
T d1h6ta2 181 QNLYLSKNHISDLR----ALAGLKNLDVLEL 207 (210)
T ss_dssp CEEECCSSCCCBCG----GGTTCTTCSEEEE
T ss_pred CEEECCCCCCCCCh----hhcCCCCCCEEEc
Confidence 55555555544332 2334444444444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.67 E-value=2.1e-16 Score=135.24 Aligned_cols=84 Identities=24% Similarity=0.278 Sum_probs=42.6
Q ss_pred cCCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccCcccCCCCCCcEEEccCCcccccCCccccCCccccccc
Q 047549 330 FQNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNMPNLFYIDLSYNSISGEFPKEFCGLPALALQE 409 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 409 (479)
+++|+.|++++|++....+..+..+++|++|++++|++....+..|..+++|++|+|++|+|++..|+.|.++++|+.++
T Consensus 53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~ 132 (192)
T d1w8aa_ 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccc
Confidence 44455555555555444444455555555555555555544444455555555555555555544445555555555554
Q ss_pred cccc
Q 047549 410 AKNR 413 (479)
Q Consensus 410 ~~~~ 413 (479)
+++|
T Consensus 133 L~~N 136 (192)
T d1w8aa_ 133 LASN 136 (192)
T ss_dssp CTTC
T ss_pred cccc
Confidence 4443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.9e-15 Score=130.01 Aligned_cols=161 Identities=25% Similarity=0.395 Sum_probs=101.7
Q ss_pred CCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhh
Q 047549 120 NFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLM 199 (479)
Q Consensus 120 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~ 199 (479)
.++++++|+++++.+. .+ +.+..+++|++|++++|++++..+ +..+++|++|++++|.+... + .+.
T Consensus 38 ~l~~l~~L~l~~~~i~-~l-~~l~~l~nL~~L~Ls~N~l~~~~~----------l~~l~~L~~L~l~~n~~~~~-~-~l~ 103 (199)
T d2omxa2 38 DLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP----------LKNLTKLVDILMNNNQIADI-T-PLA 103 (199)
T ss_dssp HHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSCCCCC-G-GGT
T ss_pred HhcCCCEEECCCCCCC-Cc-cccccCCCcCcCccccccccCccc----------ccCCcccccccccccccccc-c-ccc
Confidence 4567777777777776 33 235667777777777777664322 34567777777777766632 2 366
Q ss_pred cCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccChhhhhccCCCCE
Q 047549 200 NCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSY 279 (479)
Q Consensus 200 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 279 (479)
.++.|+.++++++... .++ .+..+++|+.+++++|.+. .+ ..+..+++|++|++++|.+++.. .+.++++|++
T Consensus 104 ~l~~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~ 176 (199)
T d2omxa2 104 NLTNLTGLTLFNNQIT-DID--PLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLER 176 (199)
T ss_dssp TCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred cccccccccccccccc-ccc--ccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCc--cccCCCCCCE
Confidence 6777777777777665 222 3556677777777777665 22 24666677777777777776532 3666777777
Q ss_pred EEccCCCCCCCCCccccccCCCCCcE
Q 047549 280 LSINNNNLSNITGAIGILMGCKNLRM 305 (479)
Q Consensus 280 L~L~~n~l~~~~~~~~~l~~~~~L~~ 305 (479)
|++++|++++++ .++.+++|+.
T Consensus 177 L~ls~N~i~~i~----~l~~L~~L~~ 198 (199)
T d2omxa2 177 LDISSNKVSDIS----VLAKLTNLES 198 (199)
T ss_dssp EECCSSCCCCCG----GGGGCTTCSE
T ss_pred EECCCCCCCCCc----cccCCCCCCc
Confidence 777777766543 2444555544
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.65 E-value=4.5e-16 Score=133.17 Aligned_cols=130 Identities=27% Similarity=0.405 Sum_probs=85.4
Q ss_pred cEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchhhhcCCCC
Q 047549 125 QTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQFLMNCTNL 204 (479)
Q Consensus 125 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 204 (479)
++++.++++++ .+|..+. +++++|++++|.++..++... |..+++|++|++++|.+....+..+..+++|
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~-------f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L 80 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGL-------FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCS-------GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccc-------cCCCceEeeeecccccccccccccccccccc
Confidence 35556666655 4554442 456666666666654333321 4556677777777777776666677777777
Q ss_pred CeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccc
Q 047549 205 ITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEE 265 (479)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 265 (479)
++|++++|++. .++...|.++++|++|+|++|.+++..+..|..+++|+++++++|.+..
T Consensus 81 ~~L~Ls~N~l~-~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 81 QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEEECCSCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ceeeecccccc-ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence 77777777776 5555567777777777777777776666667777777777777777654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.9e-16 Score=140.16 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=86.0
Q ss_pred CCCcEEEccCCccccc-CCccCcCCCCCCEEEccCCcccccChhhhhccCCCCEEEccCC-CCCCCCCccccccCCCCCc
Q 047549 227 HNLHTIDLGNNNFTGS-FPLTLTSCMFLTAIRLSGNKIEEQISPTILALVSVSYLSINNN-NLSNITGAIGILMGCKNLR 304 (479)
Q Consensus 227 ~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~~~~L~ 304 (479)
.+|++|+++++.++.. +...+..+++|++|+++++.+++..+..+..+++|++|+++++ .+++. +.......+++|+
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-~l~~l~~~~~~L~ 124 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLD 124 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCC
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-ccchhhHHHHhcc
Confidence 3455555555544322 2223444555555555555554444444555555555555553 23210 1111123455555
Q ss_pred EEEccCcc-ccccCCCCccccccccccCCccEEEeeCCc--ceec-CchhhcCCCCCCEEeCCCCc-cccccCcccCCCC
Q 047549 305 MLLLCKIF-FHEAIPDENQITISSYAFQNLVVLGIGNCE--IKGQ-IPTWLGKLKKLQVLDLGSNQ-ITGPIPGWLGNMP 379 (479)
Q Consensus 305 ~L~l~~n~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 379 (479)
+|+++++. ++.... . ......+++|+.|+++++. +++. +...+..+++|++|++++|. +++.....+..++
T Consensus 125 ~L~ls~c~~~~~~~~---~-~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~ 200 (284)
T d2astb2 125 ELNLSWCFDFTEKHV---Q-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200 (284)
T ss_dssp EEECCCCTTCCHHHH---H-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred ccccccccccccccc---h-hhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence 55555432 111000 0 0000123456666666542 2221 22233456666666666643 4444455556666
Q ss_pred CCcEEEccCC-cccccCCccccCCccccccccccc
Q 047549 380 NLFYIDLSYN-SISGEFPKEFCGLPALALQEAKNR 413 (479)
Q Consensus 380 ~L~~L~L~~N-~l~~~~p~~~~~l~~L~~l~~~~~ 413 (479)
+|++|++++| .+++.....+.++++|+.++++++
T Consensus 201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 6666666663 455444455556666666665544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.2e-16 Score=141.99 Aligned_cols=221 Identities=15% Similarity=0.092 Sum_probs=103.1
Q ss_pred EEECCCCCccccccccccCCCCCCeeecCCCcCCCcCC---CCCCCCEEEcCCcccccCCCCCCcCCCCCCCcEEEcccc
Q 047549 56 HLWLPDRGLRGSIYPFTGKLTHLCHLNLSHNHLSFLSP---SVPFLSILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFS 132 (479)
Q Consensus 56 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~L~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 132 (479)
++|+++..+.......+.. ..+..+.++...+..... ...+|++||++++.++.. .+...+.++++|++|+++++
T Consensus 4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~-~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH-HHHHHHTTBCCCSEEECTTC
T ss_pred EEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHH-HHHHHHHhCCCccccccccc
Confidence 5777776664322222211 123444454443332211 114667777776665421 22334556667777777776
Q ss_pred ccccCCCccCCCCCCCCEEECCCC-cccccCCccccccCCCCCCCCCCCCEEEccCC-cCccc-cchhhh-cCCCCCeee
Q 047549 133 YLSGSIPDDVSAAASLEDISLPVN-QLSGAISNGVVNLTSLNIGKLANLKSLKLHTN-SLSGF-LPQFLM-NCTNLITLN 208 (479)
Q Consensus 133 ~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n-~l~~~-~~~~l~-~l~~L~~L~ 208 (479)
.+++..+..+..+++|++|+++++ .++...-..+ +..+++|++|++++| .++.. +...+. .+++|+.|+
T Consensus 82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l-------~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~ 154 (284)
T d2astb2 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154 (284)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-------HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred CCCcHHHHHHhcCCCCcCccccccccccccccchh-------hHHHHhccccccccccccccccchhhhcccccccchhh
Confidence 665555555666666666666664 2332111111 123566666666664 33321 111222 234566666
Q ss_pred ccCCc--CccccCccccCCCCCCcEEEccCC-cccccCCccCcCCCCCCEEEccCC-cccccChhhhhccCCCCEEEccC
Q 047549 209 LRINN--FRGDLSAYNFSTLHNLHTIDLGNN-NFTGSFPLTLTSCMFLTAIRLSGN-KIEEQISPTILALVSVSYLSINN 284 (479)
Q Consensus 209 l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 284 (479)
++++. ++..-.......+++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|+.|++++
T Consensus 155 l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred hcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 65432 221100011233455555555553 244344444455555555555553 34333333444455555555544
Q ss_pred C
Q 047549 285 N 285 (479)
Q Consensus 285 n 285 (479)
+
T Consensus 235 ~ 235 (284)
T d2astb2 235 I 235 (284)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.55 E-value=1.7e-16 Score=149.20 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=120.3
Q ss_pred CcCCCCCCCcEEEcccccccc----CCCccCCCCCCCCEEECCCCccccc---CCccccccCCCCCCCCCCCCEEEccCC
Q 047549 116 SGLGNFSKLQTFRAGFSYLSG----SIPDDVSAAASLEDISLPVNQLSGA---ISNGVVNLTSLNIGKLANLKSLKLHTN 188 (479)
Q Consensus 116 ~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~l~~~~~~~L~~L~L~~n 188 (479)
..+.....++.|++++|.+.. .+...+...++|+.++++++..... .+..+..+.. .+..+++|++|++++|
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-ALLKCPKLHTVRLSDN 103 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH-HHTTCTTCCEEECCSC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHH-HHhhCCCccccccccc
Confidence 334445556666666665532 2223344556666666655433211 1111111000 1334556666666666
Q ss_pred cCccc----cchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCccc
Q 047549 189 SLSGF----LPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIE 264 (479)
Q Consensus 189 ~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 264 (479)
.++.. +...+...++|+.|++++|.+... ....+.. .+..+ .........+.|+.+.+++|.+.
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~ 171 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLE 171 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred ccccccccchhhhhcccccchheeccccccccc-ccccccc--ccccc---------ccccccccCcccceeeccccccc
Confidence 66543 223334556666666666655310 0000000 00000 00000112334444444444443
Q ss_pred ccC----hhhhhccCCCCEEEccCCCCCCCC--C-ccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEE
Q 047549 265 EQI----SPTILALVSVSYLSINNNNLSNIT--G-AIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLG 337 (479)
Q Consensus 265 ~~~----~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~ 337 (479)
... ...+..++.++.|++++|.++... . ....+..+++|+.|++++|.++........ .....+++|++|+
T Consensus 172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~--~~l~~~~~L~~L~ 249 (344)
T d2ca6a1 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--IALKSWPNLRELG 249 (344)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH--HHGGGCTTCCEEE
T ss_pred ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc--ccccccccchhhh
Confidence 221 122334455555555555544210 0 112344555566666665554332111000 0012456677777
Q ss_pred eeCCcceec----CchhhcC--CCCCCEEeCCCCccccc----cCcccC-CCCCCcEEEccCCccc
Q 047549 338 IGNCEIKGQ----IPTWLGK--LKKLQVLDLGSNQITGP----IPGWLG-NMPNLFYIDLSYNSIS 392 (479)
Q Consensus 338 l~~n~l~~~----~~~~l~~--l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~L~~N~l~ 392 (479)
+++|.+++. +...+.. .+.|++|++++|++... +...+. ++++|+.|++++|++.
T Consensus 250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 777777643 2223332 35688888888887642 223332 5678888888888886
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.49 E-value=2.8e-15 Score=140.71 Aligned_cols=255 Identities=16% Similarity=0.119 Sum_probs=152.0
Q ss_pred CCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc---cchhhhcCCCCCeeeccCCcC
Q 047549 138 IPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF---LPQFLMNCTNLITLNLRINNF 214 (479)
Q Consensus 138 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l 214 (479)
+...+.+...+++|++++|.+.......+.. .+...++|+.++++++..... .+..+.
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~----~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~--------------- 83 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALR--------------- 83 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHH----TTTTCTTCCEEECCSCCTTSCGGGSHHHHH---------------
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHH----HHHhCCCCCEEECCCCcccccccccchHHH---------------
Confidence 3344555677777777777665433333322 144566777777766543311 111110
Q ss_pred ccccCccccCCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCCcccccChh-------------hhhccCCC
Q 047549 215 RGDLSAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSGNKIEEQISP-------------TILALVSV 277 (479)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L 277 (479)
.+. ..+..+++|++|++++|.+... +...+...++|+.|++++|.+...... .....+.|
T Consensus 84 --~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L 160 (344)
T d2ca6a1 84 --LLL-QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 160 (344)
T ss_dssp --HHH-HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred --HHH-HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCccc
Confidence 000 1233445555555555554432 222334456677777777665322111 12346789
Q ss_pred CEEEccCCCCCCCC--CccccccCCCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCCcceec----Cchhh
Q 047549 278 SYLSINNNNLSNIT--GAIGILMGCKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNCEIKGQ----IPTWL 351 (479)
Q Consensus 278 ~~L~L~~n~l~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l 351 (479)
+.+++++|.++... .....+..++.|+.|+++.|.+........ +.......++|+.|++++|.++.. +...+
T Consensus 161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~-l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l 239 (344)
T d2ca6a1 161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-LLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239 (344)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH-HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred ceeecccccccccccccccchhhhhhhhcccccccccccccccccc-hhhhhcchhhhcccccccccccccccccccccc
Confidence 99999999886322 122345678899999999998764211000 001113568899999999998643 44567
Q ss_pred cCCCCCCEEeCCCCccccccC----cccC--CCCCCcEEEccCCcccccC----Ccccc-CCccccccccccccC
Q 047549 352 GKLKKLQVLDLGSNQITGPIP----GWLG--NMPNLFYIDLSYNSISGEF----PKEFC-GLPALALQEAKNRAD 415 (479)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~~~~----~~~~--~l~~L~~L~L~~N~l~~~~----p~~~~-~l~~L~~l~~~~~~~ 415 (479)
..+++|++|++++|.+.+.-. ..+. ..+.|++|++++|+++... .+.+. +++.|+.+++++|..
T Consensus 240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~ 314 (344)
T d2ca6a1 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314 (344)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence 889999999999999975422 2333 3467999999999987532 33342 567888888877654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.5e-14 Score=115.42 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccccchh
Q 047549 118 LGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGFLPQF 197 (479)
Q Consensus 118 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~~~~~ 197 (479)
+.++.++++|++++|+++ .++..+..+++|++|++++|.++.. +. +..+++|++|++++|.++...+..
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~~---------~~~l~~L~~L~ls~N~i~~l~~~~ 82 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DG---------FPLLRRLKTLLVNNNRICRIGEGL 82 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CC---------CCCCSSCCEEECCSSCCCEECSCH
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-CC---------cccCcchhhhhcccccccCCCccc
Confidence 345566777777777776 4455555667777777777766632 11 445667777777777777554445
Q ss_pred hhcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCccc
Q 047549 198 LMNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNFT 240 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~ 240 (479)
+..+++|+.|++++|.+. .++. ..+..+++|+++++++|+++
T Consensus 83 ~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 83 DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred cccccccccceecccccc-ccccccccccccccchhhcCCCccc
Confidence 556777777777777665 3322 23455556666666666554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.7e-14 Score=116.30 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=72.4
Q ss_pred CCCCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCC
Q 047549 175 GKLANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLT 254 (479)
Q Consensus 175 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 254 (479)
.++.++++|++++|+++.. +..+..+++|+.|++++|.+. .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus 15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence 3455666666666666633 444455666677777776665 443 355666666666666666644333345566666
Q ss_pred EEEccCCcccccCh-hhhhccCCCCEEEccCCCCCCCCCcc-ccccCCCCCcEEE
Q 047549 255 AIRLSGNKIEEQIS-PTILALVSVSYLSINNNNLSNITGAI-GILMGCKNLRMLL 307 (479)
Q Consensus 255 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~~~~L~~L~ 307 (479)
.|++++|.+..... ..+..+++|+++++++|.++..+... ..+..+|+|+.||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 66666666654321 34555666666666666665443211 1233444554443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.2e-13 Score=108.17 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=64.9
Q ss_pred CEEEcCCcccccCCCCCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCC
Q 047549 99 SILDFSHNYFRGHCQLPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLA 178 (479)
Q Consensus 99 ~~L~L~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~ 178 (479)
|+|++++|.++ .++ .++.+++|++|++++|.++ .+|..++.+++|++|++++|.++.. +. +..++
T Consensus 1 R~L~Ls~n~l~---~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~~---------~~~l~ 65 (124)
T d1dcea3 1 RVLHLAHKDLT---VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DG---------VANLP 65 (124)
T ss_dssp SEEECTTSCCS---SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GG---------GTTCS
T ss_pred CEEEcCCCCCC---CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-Cc---------ccccc
Confidence 45666666666 344 3667777777777777776 5666677777777777777766642 21 34566
Q ss_pred CCCEEEccCCcCcccc-chhhhcCCCCCeeeccCCcCc
Q 047549 179 NLKSLKLHTNSLSGFL-PQFLMNCTNLITLNLRINNFR 215 (479)
Q Consensus 179 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 215 (479)
+|++|++++|.++... ...+..+++|+.+++++|.++
T Consensus 66 ~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 66 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 6777777777666432 234566666666666666664
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=4.4e-13 Score=104.93 Aligned_cols=87 Identities=17% Similarity=0.295 Sum_probs=33.5
Q ss_pred hhcCCCCCeeeccCCcCccccCccccCCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCCcccccC-hhhhhccCC
Q 047549 198 LMNCTNLITLNLRINNFRGDLSAYNFSTLHNLHTIDLGNNNFTGSFPLTLTSCMFLTAIRLSGNKIEEQI-SPTILALVS 276 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~ 276 (479)
+..+++|++|++++|.++ .+|. .+..+++|++|++++|.++. +| .+..+++|+.|++++|+++... ...+..+++
T Consensus 16 l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~ 91 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 91 (124)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred cccCCCCCEEECCCCccC-cchh-hhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence 333444444444444443 3332 23334444444444444431 11 2333444444444444443321 123334444
Q ss_pred CCEEEccCCCCC
Q 047549 277 VSYLSINNNNLS 288 (479)
Q Consensus 277 L~~L~L~~n~l~ 288 (479)
|+.+++++|.++
T Consensus 92 L~~L~l~~N~i~ 103 (124)
T d1dcea3 92 LVLLNLQGNSLC 103 (124)
T ss_dssp CCEEECTTSGGG
T ss_pred CCEEECCCCcCC
Confidence 444444444443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.6e-11 Score=98.79 Aligned_cols=93 Identities=18% Similarity=0.057 Sum_probs=53.6
Q ss_pred CCCCcEEEccCccccccCCCCccccccccccCCccEEEeeCC-cceecCchhhcCCCCCCEEeCCCCccccccCcccCCC
Q 047549 300 CKNLRMLLLCKIFFHEAIPDENQITISSYAFQNLVVLGIGNC-EIKGQIPTWLGKLKKLQVLDLGSNQITGPIPGWLGNM 378 (479)
Q Consensus 300 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 378 (479)
+...+.++.+++.+... |.... ..++|++|+++++ .++...+..|.++++|+.|++++|+++...+..|..+
T Consensus 7 c~~~~~l~c~~~~~~~~-p~~l~------~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 79 (156)
T d2ifga3 7 PHGSSGLRCTRDGALDS-LHHLP------GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (156)
T ss_dssp CSSSSCEECCSSCCCTT-TTTSC------SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred cCCCCeEEecCCCCccC-ccccc------CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccc
Confidence 33445566655554432 22111 3456667777554 3655455566667777777777777765556666667
Q ss_pred CCCcEEEccCCcccccCCccc
Q 047549 379 PNLFYIDLSYNSISGEFPKEF 399 (479)
Q Consensus 379 ~~L~~L~L~~N~l~~~~p~~~ 399 (479)
++|++|+|++|+++...+..|
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~~ 100 (156)
T d2ifga3 80 PRLSRLNLSFNALESLSWKTV 100 (156)
T ss_dssp SCCCEEECCSSCCSCCCSTTT
T ss_pred ccccceeccCCCCcccChhhh
Confidence 777777777777664333333
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=6.3e-13 Score=113.37 Aligned_cols=64 Identities=25% Similarity=0.247 Sum_probs=39.8
Q ss_pred CCccEEEeeCCcceecCchhhcCCCCCCEEeCCCCccccccC-cccCCCCCCcEEEccCCcccccCC
Q 047549 331 QNLVVLGIGNCEIKGQIPTWLGKLKKLQVLDLGSNQITGPIP-GWLGNMPNLFYIDLSYNSISGEFP 396 (479)
Q Consensus 331 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p 396 (479)
++|+.|++++|+++. + ..+..+++|+.|++++|++.+... ..+..+++|++|++++|++....+
T Consensus 93 ~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 157 (198)
T d1m9la_ 93 DTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred ccccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence 456677777776663 2 235666677777777777763221 356667777777777777664433
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=1.6e-13 Score=117.10 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCCcCCCCCCCcEEEccccccccCCCccCCCCCCCCEEECCCCcccccCCccccccCCCCCCCCCCCCEEEccCCcCccc
Q 047549 114 LPSGLGNFSKLQTFRAGFSYLSGSIPDDVSAAASLEDISLPVNQLSGAISNGVVNLTSLNIGKLANLKSLKLHTNSLSGF 193 (479)
Q Consensus 114 l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~~L~~L~L~~n~l~~~ 193 (479)
++..+..+++|++|++++|+++ .++ .+..+++|++|++++|.++.. +.. +..+++|++|++++|.++..
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i-~~~--------~~~~~~L~~L~l~~N~i~~l 108 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKI-ENL--------DAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSC-SSH--------HHHHHHCCEEECSEEECCCH
T ss_pred hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccccc-ccc--------cccccccccccccccccccc
Confidence 3344555555555555555555 232 344555555555555554421 111 11123455555555555421
Q ss_pred cchhhhcCCCCCeeeccCCcCccccCc-cccCCCCCCcEEEccCCcc
Q 047549 194 LPQFLMNCTNLITLNLRINNFRGDLSA-YNFSTLHNLHTIDLGNNNF 239 (479)
Q Consensus 194 ~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l 239 (479)
..+..+++|+.|++++|.+. .++. ..+..+++|++|++++|++
T Consensus 109 --~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 109 --SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHH
T ss_pred --ccccccccccccccccchhc-cccccccccCCCccceeecCCCcc
Confidence 22444455555555555443 2211 1234444444444444444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.5e-10 Score=94.23 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=15.4
Q ss_pred CCCCCEEEccCCcCccccchhhhcCCCCCeeeccCCcCc
Q 047549 177 LANLKSLKLHTNSLSGFLPQFLMNCTNLITLNLRINNFR 215 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 215 (479)
+++|+.|++++|+++...+.+|..+++|++|++++|+++
T Consensus 55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 93 (156)
T d2ifga3 55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (156)
T ss_dssp CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred ccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence 333333444444333333333344444444444444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=7.8e-08 Score=78.28 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=17.7
Q ss_pred CCCCCCEEEccCCcccccC--hhhhhccCCCCEEEccCCCCCC
Q 047549 249 SCMFLTAIRLSGNKIEEQI--SPTILALVSVSYLSINNNNLSN 289 (479)
Q Consensus 249 ~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~ 289 (479)
.+++|++|++++|+++... +..+..+++|+.|++++|.+++
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~ 105 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence 3444444444444444322 1223344444444444444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=1.5e-06 Score=70.44 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=15.9
Q ss_pred CCCCCEEEccCCcCccc--cchhhhcCCCCCeeeccCCcCc
Q 047549 177 LANLKSLKLHTNSLSGF--LPQFLMNCTNLITLNLRINNFR 215 (479)
Q Consensus 177 ~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~ 215 (479)
+++|++|++++|+++.. ++..+..+++|+.|++++|.+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~ 104 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 104 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence 34444444444444422 1222334444444444444443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.72 E-value=5.3e-06 Score=67.37 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=37.7
Q ss_pred cCCccEEEeeCCcceec----CchhhcCCCCCCEEeCCCCccccc-------cCcccCCCCCCcEEEccCCcc
Q 047549 330 FQNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDLGSNQITGP-------IPGWLGNMPNLFYIDLSYNSI 391 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l 391 (479)
.+.|++|++++|.+++. +...+...++|++|++++|++... +...+...++|+.|+++.+..
T Consensus 71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 35567777777766543 233556667788888877754421 233445567777777766543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.72 E-value=2e-05 Score=63.78 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=26.7
Q ss_pred hhcCCCCCeeeccCCcCcccc---CccccCCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCCc
Q 047549 198 LMNCTNLITLNLRINNFRGDL---SAYNFSTLHNLHTIDLGNNNFTGS----FPLTLTSCMFLTAIRLSGNK 262 (479)
Q Consensus 198 l~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~ 262 (479)
+...+.|++|++++|.+.... -...+...+.|++|++++|.+... +...+...+.|++|++++|.
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 334445555555555443110 001222334455555555544321 12233344455555555543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.03 E-value=3.3e-05 Score=62.45 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=36.6
Q ss_pred cCCccEEEeeCCcceec----CchhhcCCCCCCEEeC--CCCccccc----cCcccCCCCCCcEEEccCCcc
Q 047549 330 FQNLVVLGIGNCEIKGQ----IPTWLGKLKKLQVLDL--GSNQITGP----IPGWLGNMPNLFYIDLSYNSI 391 (479)
Q Consensus 330 ~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~N~l 391 (479)
.++++.+++++|.++.. +...+...++|+.++| ++|.+.+. +...+...++|+.|+++.+..
T Consensus 73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 34566666666666532 3345566777776544 45566432 334455677788888776644
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.96 E-value=0.00021 Score=57.44 Aligned_cols=13 Identities=0% Similarity=-0.184 Sum_probs=6.1
Q ss_pred hccCCCCEEEccC
Q 047549 272 LALVSVSYLSINN 284 (479)
Q Consensus 272 ~~l~~L~~L~L~~ 284 (479)
...++|+.|++..
T Consensus 129 ~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 129 EKNTTLLKFGYHF 141 (166)
T ss_dssp HHCSSCCEEECCC
T ss_pred HhCCCcCEEeCcC
Confidence 3444555555443
|