Citrus Sinensis ID: 047553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MQRLKLNPFPNSQNFAIKSLFSFFASLSKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLGS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccHHccccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHcccEEEccHHcccHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHcHHHHHHHHHccccHHHHHHHHHHcccEEcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHEEEEcHHHHccHHHHHHHHHHHcccccccccccHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mqrlklnpfpnsqnFAIKSLFSFFAslsktpnstnfIFLNFLIKTlnipksralpisnkfsrikslekpETVRQFLHnvgfsdthiqltvtsrptilfsdvdktlkPKIEFFqhlglvgsdlgkfisknpsLFAASLERKLIPCVEILKKIlvddsnnedLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQprlfcykeLKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLacsienrvipryRVFQIIMSrgmfkkdcsfpsmlllsEGNFLQKFVLSFGDDAEELLLSYKGHKLGS
Flexible Loop (DISEMBL)
mqrlklnpfpnsqNFAIKSLFSFFASLSKTPNSTNFIFLNFLIKTlnipksralpisNKFSRIKSLEKPETVRQFLHnvgfsdthiqltvtsrptILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKilvddsnnedlTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLacsienrvipRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLGS
Low Complexity Region (SEG)
MQRLKLNPFPNSQNfaikslfsffaslskTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLGS
Disordered region (IsUnstruct)
*************NFAIKSLFSFFASLSKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSY*******
Disordered Region (DISOPRED)
*************NFAIKS*****************IFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKL**
Disordered Region (DISEMBL)
MQRLKLNPFPNSQNFAIKSLFSFFASLSKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLGS
Disordered Region (DISPRO)
*QRLKLNPFPNSQ*********************NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRLKLNPFPNSQNFAIKSLFSFFASLSKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
Q96E29	417	mTERF domain-containing p	yes	no	0.273	0.247	0.333	8e-05

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 213 ELKIRHLVSRLLDMGFSTNS-RMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMF 271
           E  I+ ++  L D+G   N    F+     +   + E    ++    S  FSK +V QM 
Sbjct: 185 EKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMV 244

Query: 272 RKAPLILKASEERLQLGLEFFLKEIECE----KSVLVRIPICLACSIE 315
           RKAP +L  S ERL   L FF KE+E      + ++VR+P  L  S+E
Sbjct: 245 RKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 292

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
225438585	388	PREDICTED: uncharacterized protein LOC10	0.899	0.873	0.554	1e-103
296082490	369	unnamed protein product [Vitis vinifera]	0.899	0.918	0.554	1e-103
255584420	366	conserved hypothetical protein [Ricinus	0.909	0.937	0.531	3e-98
21553423	391	unknown [Arabidopsis thaliana]	0.909	0.877	0.434	2e-70
15238313	391	Mitochondrial transcription termination	0.909	0.877	0.434	2e-70
449462880	319	PREDICTED: uncharacterized protein LOC10	0.822	0.971	0.427	1e-66
356528284	1401	PREDICTED: uncharacterized protein LOC10	0.734	0.197	0.484	5e-63
297794097	382	hypothetical protein ARALYDRAFT_919822 [	0.875	0.863	0.406	2e-62
225465339	365	PREDICTED: uncharacterized protein LOC10	0.923	0.953	0.310	2e-47
224053166	378	predicted protein [Populus trichocarpa]	0.875	0.873	0.325	1e-46

>gi|225438585|ref|XP_002276330.1| PREDICTED: uncharacterized protein LOC100268158 [Vitis vinifera]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/341 (55%), Positives = 252/341 (73%), Gaps = 2/341 (0%)

Query: 35  NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRP 94
           N I +N+LI+T    ++ A  ISN+F   KS E P++V  FL ++GFS+ HI+ +V   P
Sbjct: 45  NPIIVNYLIQTFGFSQTLANSISNRFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGP 104

Query: 95  TILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVD 154
            ILFSD+DKTLKPK++FF+ LGLVG+DLGKFISKN  +   SLE+KL+PC+EILKK L D
Sbjct: 105 QILFSDIDKTLKPKVQFFEQLGLVGADLGKFISKNSKVLTISLEKKLVPCIEILKKTLSD 164

Query: 155 DSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKEL 214
           D NN DL RV RRC W L  + E   LL NI +L+SCGIVGSQLSMLL  QPRLF  K+ 
Sbjct: 165 DENNGDLIRVLRRCTWVLSRNPEL--LLSNIAFLESCGIVGSQLSMLLTRQPRLFVIKQS 222

Query: 215 KIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKA 274
            ++ LVSR +DMGFS  SRM VY L  +SCL +ET  +K ELFRS+GF+++E ++MFR+ 
Sbjct: 223 TLKDLVSRAVDMGFSIESRMLVYALYTISCLRDETLRKKFELFRSWGFTEQECIEMFRRT 282

Query: 275 PLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMF 334
           P +L+ASEE+L+LG+EFF+  ++ EK++LV  P  L  S+E+RVIPRYRV QI+ S+ + 
Sbjct: 283 PGLLRASEEKLKLGMEFFMNTMKFEKTLLVHRPTILMLSMEDRVIPRYRVLQILKSKRLL 342

Query: 335 KKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKL 375
           K++ SF ++L L++  FL KF+  F DDAEELL++YKGH L
Sbjct: 343 KREPSFINVLSLTDEEFLDKFISRFADDAEELLVAYKGHTL 383

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082490|emb|CBI21495.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/341 (55%), Positives = 252/341 (73%), Gaps = 2/341 (0%)

Query: 35  NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRP 94
           N I +N+LI+T    ++ A  ISN+F   KS E P++V  FL ++GFS+ HI+ +V   P
Sbjct: 26  NPIIVNYLIQTFGFSQTLANSISNRFWWAKSTENPQSVIHFLRDLGFSEAHIRTSVRVGP 85

Query: 95  TILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVD 154
            ILFSD+DKTLKPK++FF+ LGLVG+DLGKFISKN  +   SLE+KL+PC+EILKK L D
Sbjct: 86  QILFSDIDKTLKPKVQFFEQLGLVGADLGKFISKNSKVLTISLEKKLVPCIEILKKTLSD 145

Query: 155 DSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKEL 214
           D NN DL RV RRC W L  + E   LL NI +L+SCGIVGSQLSMLL  QPRLF  K+ 
Sbjct: 146 DENNGDLIRVLRRCTWVLSRNPEL--LLSNIAFLESCGIVGSQLSMLLTRQPRLFVIKQS 203

Query: 215 KIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKA 274
            ++ LVSR +DMGFS  SRM VY L  +SCL +ET  +K ELFRS+GF+++E ++MFR+ 
Sbjct: 204 TLKDLVSRAVDMGFSIESRMLVYALYTISCLRDETLRKKFELFRSWGFTEQECIEMFRRT 263

Query: 275 PLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMF 334
           P +L+ASEE+L+LG+EFF+  ++ EK++LV  P  L  S+E+RVIPRYRV QI+ S+ + 
Sbjct: 264 PGLLRASEEKLKLGMEFFMNTMKFEKTLLVHRPTILMLSMEDRVIPRYRVLQILKSKRLL 323

Query: 335 KKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKL 375
           K++ SF ++L L++  FL KF+  F DDAEELL++YKGH L
Sbjct: 324 KREPSFINVLSLTDEEFLDKFISRFADDAEELLVAYKGHTL 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584420|ref|XP_002532942.1| conserved hypothetical protein [Ricinus communis] gi|223527293|gb|EEF29446.1| conserved hypothetical protein [Ricinus communis]

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 183/344 (53%), Positives = 254/344 (73%), Gaps = 1/344 (0%)

Query: 34  TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSR 93
            N    ++L+K+L   +++A  ISN+FS IKS EKP++V  FL N+G S++HIQ  +   
Sbjct: 18  ANPALFHYLLKSLKFSETQAFTISNRFSHIKSTEKPQSVHYFLKNLGLSNSHIQSAIHGA 77

Query: 94  PTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILV 153
           P ILF++VDK LKPK++ FQ LGLVG DLGKFISKN +L  ASL++KL P VEILK++L+
Sbjct: 78  PQILFANVDKCLKPKVKLFQDLGLVGYDLGKFISKNSTLLTASLDKKLSPRVEILKRLLL 137

Query: 154 DDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKE 213
           +D NN+DL +V  RC W +I    KS LL N+ +L+SCGIVGSQLSMLL  QPRLF  +E
Sbjct: 138 NDENNKDLVKVLTRCNW-IISKNPKSRLLSNVAFLESCGIVGSQLSMLLRRQPRLFIMQE 196

Query: 214 LKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRK 273
             +R LVS++L+MGFS NSRM VY L  +SC++ ETFG+K+E+ + +GFS+ E  +MFRK
Sbjct: 197 SALRDLVSQVLNMGFSVNSRMLVYALYTVSCMSHETFGKKIEILKKFGFSEYECTEMFRK 256

Query: 274 APLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGM 333
            P +L++SE++L+LGL+FF+  I+ ++ VLV  P CL  S+E RVIPRY+V +I+  + +
Sbjct: 257 QPGLLRSSEKKLKLGLDFFINTIKFKREVLVYRPTCLMLSMEERVIPRYKVLEIMKLKKL 316

Query: 334 FKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLGS 377
            KK  SF ++L L+E  F+QKF+ SF DDAEELL++Y+ H L S
Sbjct: 317 LKKQPSFINVLNLTEEEFVQKFIASFPDDAEELLVAYRSHTLDS 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553423|gb|AAM62516.1| unknown [Arabidopsis thaliana]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/352 (43%), Positives = 230/352 (65%), Gaps = 9/352 (2%)

Query: 26  SLSKTPNS-TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDT 84
           S + TP S +N  F+ FL +     K  A+ I+ ++  +KSLE+P +V Q L +  FSDT
Sbjct: 28  SSNATPASISNPAFVEFL-RDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDT 86

Query: 85  HIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPC 144
            IQ ++   P ++F +V+K L+PK+ FF+ +G  GS LGKF+S+N S+   SL +KLIP 
Sbjct: 87  QIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPT 146

Query: 145 VEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVW 204
           VEILK I+     +EDL  +  RC W L+       LL NI YL++CGIVGSQL+ LL  
Sbjct: 147 VEILKSIVA--PKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRR 204

Query: 205 QPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSK 264
           QPR+F   E K+R  VSR LD+GF+ NSRM V+ ++ LS L+E+TF RK++LF + GFS+
Sbjct: 205 QPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAIISLSSLSEKTFDRKVKLFMANGFSE 264

Query: 265 EEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRV 324
           +E+  + R++P +++ SE++L LG EF+LK +  E+  L + P  L+ ++E RVIPR +V
Sbjct: 265 DEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGIEREALAKRPCVLSYNLEKRVIPRLKV 324

Query: 325 FQII----MSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDD-AEELLLSYK 371
            QI+    +     KK  +   ++ ++E  FL+K+V+ FGD+ AEELL++YK
Sbjct: 325 LQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238313|ref|NP_201300.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|8843759|dbj|BAA97307.1| unnamed protein product [Arabidopsis thaliana] gi|332010591|gb|AED97974.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/352 (43%), Positives = 230/352 (65%), Gaps = 9/352 (2%)

Query: 26  SLSKTPNS-TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDT 84
           S + TP S +N  F+ FL +     K  A+ I+ ++  +KSLE+P +V Q L +  FSDT
Sbjct: 28  SSNATPASISNPAFVEFL-RDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDT 86

Query: 85  HIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPC 144
            IQ ++   P ++F +V+K L+PK+ FF+ +G  GS LGKF+S+N S+   SL +KLIP 
Sbjct: 87  QIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPT 146

Query: 145 VEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVW 204
           VEILK I+     +EDL  +  RC W L+       LL NI YL++CGIVGSQL+ LL  
Sbjct: 147 VEILKSIVA--PKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRR 204

Query: 205 QPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSK 264
           QPR+F   E K+R  VSR LD+GF+ NSRM V+ ++ LS L+E+TF RK++LF + GFS+
Sbjct: 205 QPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSE 264

Query: 265 EEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRV 324
           +E+  + R++P +++ SE++L LG EF+LK +  E+  L + P  L+ ++E RVIPR +V
Sbjct: 265 DEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKV 324

Query: 325 FQII----MSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDD-AEELLLSYK 371
            QI+    +     KK  +   ++ ++E  FL+K+V+ FGD+ AEELL++YK
Sbjct: 325 LQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462880|ref|XP_004149163.1| PREDICTED: uncharacterized protein LOC101214031 [Cucumis sativus]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/311 (42%), Positives = 203/311 (65%), Gaps = 1/311 (0%)

Query: 63  IKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDL 122
           I+S EKP +V ++L ++G SDT I+  V   P I FS ++KTLKPKIEF Q+LG VGSDL
Sbjct: 7   IQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDL 66

Query: 123 GKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLL 182
            KFIS+    F++SLE+ L+P VEILK +L   + N+DL +V RRC  +++  +    L 
Sbjct: 67  SKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCS-DVLTRSPYKVLS 125

Query: 183 RNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVL 242
            NI YL+SCGIV  QLS LL  QP LF   E +++  VS  +  GFS N  MF++GL  +
Sbjct: 126 VNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSI 185

Query: 243 SCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSV 302
           S ++  T+ +K++L  S+G +++E ++MF  AP++++ S  +L++GLEFF+ E +  KS 
Sbjct: 186 SSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSD 245

Query: 303 LVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDD 362
           +VR P CL  ++  RV+PRYRV +++ S+ + KK       L + + +FL KFV  F D+
Sbjct: 246 IVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDN 305

Query: 363 AEELLLSYKGH 373
             +L  +++G+
Sbjct: 306 MNDLFEAFRGN 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528284|ref|XP_003532734.1| PREDICTED: uncharacterized protein LOC100820280 [Glycine max]

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 137/283 (48%), Positives = 195/283 (68%), Gaps = 6/283 (2%)

Query: 93   RPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKIL 152
            +P ILF+DVDK L+PKIE FQ LGL  S+L KFISKN S+   SL++ L+P VE + KIL
Sbjct: 1123 KPQILFTDVDKILRPKIELFQLLGLERSELCKFISKNSSILTFSLKKTLVPSVEAIGKIL 1182

Query: 153  VDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYK 212
              +   +D   V  RC   ++ + +K   + N+ +L+SCGIVGS L+MLL  QP +F  +
Sbjct: 1183 CSE---KDFVHVLLRC-GRILPNYKK--FMDNVVFLESCGIVGSHLAMLLKLQPGIFITR 1236

Query: 213  ELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFR 272
            +  I   VSR +DMGF+ NSRM V+ +  +S L+ +TF RKL+L   +GFS EE LQMFR
Sbjct: 1237 QSIIGDYVSRAVDMGFNENSRMLVHAIHSISSLSYKTFRRKLKLIICFGFSNEEGLQMFR 1296

Query: 273  KAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRG 332
            ++P +L+ SE+++++GLEFFL  +   KSVLV  P  L  S+E+RV+PRYRVFQ+++ + 
Sbjct: 1297 RSPTLLRTSEKKVKVGLEFFLHTVMLPKSVLVHQPRVLMYSMEDRVLPRYRVFQLLIEKK 1356

Query: 333  MFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKL 375
            + KK  S+  +L LSE  FL K++  F ++AEELL++YKGH L
Sbjct: 1357 LCKKVPSYIHLLCLSEEVFLDKYIPHFRENAEELLVAYKGHYL 1399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794097|ref|XP_002864933.1| hypothetical protein ARALYDRAFT_919822 [Arabidopsis lyrata subsp. lyrata] gi|297310768|gb|EFH41192.1| hypothetical protein ARALYDRAFT_919822 [Arabidopsis lyrata subsp. lyrata]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 34/364 (9%)

Query: 21  FSFFASLSKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVG 80
           FS+ A  +  PN+   +F+ FL +     K +A+ I+ ++  +KSLE+P +V Q L +  
Sbjct: 27  FSWNAREASEPNA---VFVEFL-RDNGFQKPQAMAIAMRYPNLKSLEQPRSVIQMLKSYS 82

Query: 81  FSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERK 140
           FSDT IQ ++   P ++F  V+K L+PK+ FF+ +G  GSDLGKF+S++ S    SL RK
Sbjct: 83  FSDTQIQKSIRVHPQMMFYKVEKNLEPKLRFFEEIGFSGSDLGKFVSQHSSGIGISLVRK 142

Query: 141 LIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSM 200
           +IP VEILK I+     +E LT +  RC W L  D     LL NI YLK+CGIVGSQL+ 
Sbjct: 143 MIPTVEILKSIVA--PKHEHLTVILSRCGWLLGRDPNLF-LLPNISYLKTCGIVGSQLAS 199

Query: 201 LLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSY 260
           LL  QPR+F   E K+R  VSR L++GF+ NSRM V+ ++ LS LN              
Sbjct: 200 LLRRQPRIFNVPEEKLRGYVSRALELGFNLNSRMLVHAVLSLSSLN-------------- 245

Query: 261 GFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIP 320
                E+  + R++P +++ +E++L LG EF++K +  E+  LV+ P  L  ++E RVIP
Sbjct: 246 -----EITDIIRRSPGLIRCAEDKLTLGFEFYMKRMGIEREALVKRPCVLMYNLEKRVIP 300

Query: 321 RYRVFQIIMSRGMFKKDCS------FPSMLLLSEGNFLQKFVLSFGDD-AEELLLSYKGH 373
           R +V QI+  RG+  K+        F  + +  E N L+K+V+ FGD+ AEELL++YK H
Sbjct: 301 RLKVLQILRERGLLLKEEKKKKKKMFDIVEMTEEAN-LEKYVVRFGDETAEELLVAYKSH 359

Query: 374 KLGS 377
            L +
Sbjct: 360 LLNN 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465339|ref|XP_002271842.1| PREDICTED: uncharacterized protein LOC100252260 [Vitis vinifera]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 200/357 (56%), Gaps = 9/357 (2%)

Query: 20  LFSFFASLSKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNV 79
           +FSF    S T  ST    +++L  TL   +  A+ ++ K + IK+  +P++V Q   + 
Sbjct: 15  IFSFRPLSSATATST----VDYLTNTLGFARESAIAVAEKLN-IKTTTRPDSVVQLFKSY 69

Query: 80  GFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLER 139
           GF+ THI   V+  P++L ++  KTL PK++F  + G+ GS L   +S NP +   SL+ 
Sbjct: 70  GFTPTHIATIVSKLPSLLLANPVKTLAPKLQFLSNNGVSGSSLVNIVSTNPVILRRSLQN 129

Query: 140 KLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLS 199
           ++IPC+  LKK+L  D     L    +R  W +   +E+  ++ NIE L+S G+  S + 
Sbjct: 130 QIIPCISFLKKVLPTDHKIASLLTA-KRGTWVVYKFSEQ--MVPNIETLRSHGVPESNIL 186

Query: 200 MLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRS 259
            +L+ +PR   +   + + ++ R+ +MGF     MF++G+  L  + +  +  K+ +FRS
Sbjct: 187 RMLILRPRTLSFNADEFKAILKRVKEMGFDEKGMMFIHGMCALCGMKKAKWESKVSVFRS 246

Query: 260 YGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVI 319
           +G+ +EE + +F K P  +  SE R++  L+F + E+      + + P+ L  S+E RV+
Sbjct: 247 FGWGEEEFIALFVKQPQFMSNSETRIRKCLDFLINELNWMPEDIFKYPMVLLLSLEKRVV 306

Query: 320 PRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHKLG 376
           PR RV Q+++ +G+  +  S    L++SE  F++ F+ S+     ELL  Y+ +K+G
Sbjct: 307 PRSRVLQLLIGKGLVTRR-SIGRALIISEDRFMKVFMSSYEKKIPELLEVYQSNKVG 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053166|ref|XP_002297714.1| predicted protein [Populus trichocarpa] gi|224053180|ref|XP_002297716.1| predicted protein [Populus trichocarpa] gi|222844972|gb|EEE82519.1| predicted protein [Populus trichocarpa] gi|222844974|gb|EEE82521.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 188/335 (56%), Gaps = 5/335 (1%)

Query: 39  LNFLIKTLNIPKSRALPISNKFS-RIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTIL 97
           ++FLI +  +P   AL +S K     KS++KP++V +FL   GF +TH+   +  RP +L
Sbjct: 42  VDFLINSCGLPSKSALSVSQKLQLDEKSIQKPQSVLEFLKAHGFKETHVVKLIEKRPDVL 101

Query: 98  FSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSN 157
              VD  LKPK EF    G VG  L + I+ NP++   +LE  + PC E  K IL    +
Sbjct: 102 RRGVDTNLKPKFEFLIANGFVGKLLPELITSNPNVLERALESNMKPCFEYFKSIL---GS 158

Query: 158 NEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIR 217
           N+ +    +RC   L  D  KS +  N+E L   G+   ++  ++V QPR+   +  ++ 
Sbjct: 159 NDMIVAASKRCAVFLTYDW-KSIIQPNVELLIKEGVPEERVVKMIVAQPRIIYQRRDRMV 217

Query: 218 HLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLI 277
           + V+ + ++G    + MF+Y L  +  +NE T+ +K+E+ +S+G+++EE+L+ F++ P  
Sbjct: 218 YAVNAVKNLGLEPKAPMFIYALRSILSMNEFTWKKKIEVMKSFGWTEEEILRAFKQYPFQ 277

Query: 278 LKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKD 337
           L +SEE+++  ++F L  I+ E+  ++  P  L  S E R+ PRY V +I+ S+ + +  
Sbjct: 278 LSSSEEKMRKSMDFLLNTIKMERQAIIACPKFLMYSTEKRLRPRYDVLKILKSKKLIEIG 337

Query: 338 CSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKG 372
                +L +SE NFL+ +V  + D    LL  Y+G
Sbjct: 338 KKTNYLLTVSEKNFLENYVTKYADKVPGLLEVYRG 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2177734	391	AT5G64950 "AT5G64950" [Arabido	0.899	0.867	0.439	2.3e-71
TAIR|locus:2142763	405	AT5G07900 "AT5G07900" [Arabido	0.872	0.812	0.292	5.3e-40
TAIR|locus:2199612	390	AT1G21150 "AT1G21150" [Arabido	0.872	0.843	0.271	1.6e-38
TAIR|locus:1006230704	461	AT1G62085 "AT1G62085" [Arabido	0.793	0.648	0.275	9.6e-26
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.824	0.691	0.268	6.8e-25
TAIR|locus:2018062	463	AT1G62150 "AT1G62150" [Arabido	0.832	0.678	0.242	2.3e-24
TAIR|locus:2036858	418	AT1G61970 "AT1G61970" [Arabido	0.716	0.645	0.266	2.3e-24
TAIR|locus:2018042	462	AT1G62110 "AT1G62110" [Arabido	0.806	0.658	0.251	6.5e-24
TAIR|locus:2036878	414	AT1G61990 "AT1G61990" [Arabido	0.694	0.632	0.263	5.2e-22
TAIR|locus:2018057	437	AT1G62120 "AT1G62120" [Arabido	0.809	0.697	0.247	3.2e-21

TAIR|locus:2177734 AT5G64950 "AT5G64950" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 153/348 (43%), Positives = 230/348 (66%)

Query:    30 TPNS-TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQL 88
             TP S +N  F+ FL +     K  A+ I+ ++  +KSLE+P +V Q L +  FSDT IQ 
Sbjct:    32 TPASISNPAFVEFL-RDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDTQIQK 90

Query:    89 TVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEIL 148
             ++   P ++F +V+K L+PK+ FF+ +G  GS LGKF+S+N S+   SL +KLIP VEIL
Sbjct:    91 SIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEIL 150

Query:   149 KKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRL 208
             K I+     +EDL  +  RC W L+       LL NI YL++CGIVGSQL+ LL  QPR+
Sbjct:   151 KSIVAP--KHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRI 208

Query:   209 FCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVL 268
             F   E K+R  VSR LD+GF+ NSRM V+ ++ LS L+E+TF RK++LF + GFS++E+ 
Sbjct:   209 FNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEIT 268

Query:   269 QMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQII 328
              + R++P +++ SE++L LG EF+LK +  E+  L + P  L+ ++E RVIPR +V QI+
Sbjct:   269 DIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQIL 328

Query:   329 MSRGMF----KKDCSFPSMLLLSEGNFLQKFVLSFGDD-AEELLLSYK 371
               +G+     KK  +   ++ ++E  FL+K+V+ FGD+ AEELL++YK
Sbjct:   329 REKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2142763 AT5G07900 "AT5G07900" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 98/335 (29%), Positives = 176/335 (52%)

Query:    39 LNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILF 98
             LN+LI +  +    A   S K   + S E+P TV   L + GF+   I   V  RP +L 
Sbjct:    72 LNYLIDSCGLSPDSATVASRKLL-LDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLL 130

Query:    99 SDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNN 158
             ++ +  L PK+ FF  +G+  S L + ++ +P++   SL  +LIP    LK +L  DS+ 
Sbjct:   131 ANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVL--DSD- 187

Query:   159 EDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRH 218
             E +    RR  W  + D  K+ L+ NI Y+   G+    + +LL   P     K  + + 
Sbjct:   188 EKIVAALRRTTWVFLEDHTKN-LVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQA 246

Query:   219 LVSRLLDMGFSTNSRMFVYGLVVLSCL-NEETFGRKLELFRSYGFSKEEVLQMFRKAPLI 277
             +  +  +MGF+     FV  +  LS   N+  + +  E+++ +G+S+++++  F+K P  
Sbjct:   247 IAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHC 306

Query:   278 LKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKD 337
             +  SE ++   +E+F+ E+      + + P+ L  S+E R+IPR  V ++++S G+ K+D
Sbjct:   307 MMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKED 366

Query:   338 CSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKG 372
              S  S+L+  E  FL+K V+ + ++  EL+  Y G
Sbjct:   367 WSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLG 401

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2199612 AT1G21150 "AT1G21150" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 92/339 (27%), Positives = 180/339 (53%)

Query:    39 LNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILF 98
             +++L+ +  +    A   +++F ++ S +KP++V     + GF++  I   + S P +L 
Sbjct:    59 VSYLVDSCGLSLESAKS-NSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLS 117

Query:    99 SDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNN 158
                +  + PK+ FF  +G   SD  K IS +P + + SL ++LIPC + LK ILV++   
Sbjct:   118 LSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEE--- 174

Query:   159 EDLTRVFRRC--CWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKI 216
             E + +  +R   C++L +    S  LR +   +  G+    +  L+   P  F  +E + 
Sbjct:   175 ESVVKCLKRGIRCFSLKITHCVS--LR-VSICRELGVPDKSIKWLVQASPFTFFSRERRF 231

Query:   217 RHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPL 276
               +++R+   GF      FV+ +V   C +E    RK +LF+ +G+SKE+ +    + P 
Sbjct:   232 NEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPN 291

Query:   277 ILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKK 336
              +  S+E++   LE+ +  I  +   +V  P+ L+ S+E R+ PR +V  +++S+G+ KK
Sbjct:   292 CVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLVKK 351

Query:   337 -DCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYKGHK 374
              D ++ ++L L    F+ KFVL + D+  +L+  +  ++
Sbjct:   352 EDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSNR 390

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230704 AT1G62085 "AT1G62085" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 9.6e-26, P = 9.6e-26
 Identities = 87/316 (27%), Positives = 156/316 (49%)

Query:    39 LNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILF 98
             +++L+ +L +PK  A  IS K S  +    P++V   L + GF+D+ I   +T  P +L 
Sbjct:    58 VSYLVDSLGLPKKVAESISKKVS-FEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLV 116

Query:    99 SDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNN 158
             +D +K++ PK++F Q  G   S+L   +S  P +     ++ +    + +K+I+  D ++
Sbjct:   117 ADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADKSS 176

Query:   159 EDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRH 218
             +     F + C +L   +++   +RN+  L+  G+    L  LL+   +  C KE     
Sbjct:   177 K-----FEKLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLLISDHQPVCGKE-NFEE 230

Query:   219 LVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLIL 278
              + ++++MGF   +  FV  L V+    ++T   K+ + +S GFS  +V  MF+K P  L
Sbjct:   231 SLKKVVEMGFDPTTSKFVKALRVVYRFRDKTIEAKVNVCKSLGFSVGDVWAMFKKCPSFL 290

Query:   279 KASEERLQLGLEFFLK--EIECEK-SVLVRIPICLACSIENRVIPRYRVFQII-MSR--- 331
               SE ++    E   K   +E +  SVL + P C+  S E +++     F  +  SR   
Sbjct:   291 NFSENKIVQTWETLKKCGLLEDDVLSVLKKFPQCINAS-EQKIMNSIETFLGLGFSRDEV 349

Query:   332 GMFKKDCSFPSMLLLS 347
              M  K   FP  L+LS
Sbjct:   350 AMIAK--RFPQCLILS 363

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 6.8e-25, P = 6.8e-25
 Identities = 89/331 (26%), Positives = 162/331 (48%)

Query:    30 TPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLT 89
             +P  + F  +++L+++L + K  A  IS K +  +    P++V   L + GF D+ I   
Sbjct:    47 SPKGSTFT-VSYLVESLGLTKKLAETISKKVT-FEDKVNPDSVLNLLRSNGFKDSQISRI 104

Query:    90 VTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILK 149
             + + P +L +D +K+L+PK++F +  G   S++ + +S  P++     E  +    + +K
Sbjct:   105 IRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDKKGEESVSLYYDFVK 164

Query:   150 KILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLF 209
              I+ D  +           C +   + +K   +RNI  L+  G+    L  LL+ + +  
Sbjct:   165 DIMQDGKS----------LCISC-PEGKKGNRIRNISVLRELGVPQKLLFSLLISRYQPV 213

Query:   210 CYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQ 269
             C KE K    + +++DMGF      FV  L V+  ++E+T   K+ +++  GFS+ E+  
Sbjct:   214 CGKE-KFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKRLGFSEAEIWA 272

Query:   270 MFRKAPLILKASEERLQLGLEFFLK--EIECEK-SVLVRIPICLACSIENRVIPRYRVFQ 326
             +F+K P  LK SE+++ L  E   K   +E E  SVL   P C+  S E +++    +F 
Sbjct:   273 IFKKWPYFLKFSEKKIILMFETLKKCGLVEEEIISVLKSRPQCIRSS-EQKILDSIEMFL 331

Query:   327 II-MSRGMFKKDCS-FPSMLLLSEGNFLQKF 355
              +  SR  FK     +P     S     +KF
Sbjct:   332 GLGFSRDDFKMMVKRYPCCTAYSGETLRKKF 362

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018062 AT1G62150 "AT1G62150" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 79/326 (24%), Positives = 151/326 (46%)

Query:     3 RLKLNPFPNSQNXXXXXXXXXXXXXXXTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSR 62
             +L  N F    N               +    NF  +++L+ +L +    A  IS K S 
Sbjct:    26 KLLQNVFSVFSNSFSSVATAADVSFRDSRKGNNFT-VSYLVDSLGLASKLAESISMKVS- 83

Query:    63 IKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDL 122
              ++   P+TV   L +  F+D+ I   ++  PT+L +D + +L PK+   Q  G   S+L
Sbjct:    84 FENKGNPDTVLNLLRSHEFTDSQISSIISDYPTLLVADAENSLGPKLLLMQSRGASSSEL 143

Query:   123 GKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLL 182
              + +SK P +     ++ +    +I+K+I+  D +++     F + C +L   +++   +
Sbjct:   144 TEIVSKVPKILGMKGDKSIGRYYDIVKEIIEADKSSK-----FEKLCHSLPEGSKQENKI 198

Query:   183 RNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVL 242
             RN+  L+  G+    L  LL     + C KE K    +++++ MGF   +  FV  L ++
Sbjct:   199 RNVLVLRDLGVPQRLLFSLLFSNHHVCCGKE-KFEESLNKVVGMGFDPTTPKFVEALCIV 257

Query:   243 SCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSV 302
               L+++       +++ +G +  +V ++F+K P  L  SE R+    E   +   CE  V
Sbjct:   258 YGLSDKRLEENFNVYKRFGLTVNDVWELFKKCPAFLGYSENRIIQTFEALKRCGLCEDEV 317

Query:   303 LV---RIPICLACSIENRVIPRYRVF 325
             L    + P+CL  S E +++     F
Sbjct:   318 LSVFKKNPLCLRAS-EQQILNSMETF 342

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2036858 AT1G61970 "AT1G61970" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 76/285 (26%), Positives = 139/285 (48%)

Query:    35 NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRP 94
             NF  +++L+ +L +    A  IS K S  +    P++V   L + GF+ + I   +   P
Sbjct:    52 NFT-VSYLVDSLGLTTKLAESISRKVS-FEDKNNPDSVLNLLTSHGFTGSQISTIIRDYP 109

Query:    95 TILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVD 154
              +L +D +K+L PK++F Q  G   S++ + +S  P +      + +    + +K  L++
Sbjct:   110 QLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIKDTLLE 169

Query:   155 DSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKEL 214
              S+  +      + C +L     ++ + RN+  L+  G+    L  LL+   +  C KE 
Sbjct:   170 KSSKNE------KLCHSLPQGNLENKI-RNVSVLRELGMPHKLLFSLLISDSQPVCGKE- 221

Query:   215 KIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKA 274
             K    + ++++MGF   +  FV  L V+  +NE+T   K+ L++S GF   +V   F+K 
Sbjct:   222 KFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKKW 281

Query:   275 PLILKASEERLQLGLEFFL----KEIECEKSVLVRIPICLACSIE 315
             P+ L+ SE+++   +E FL       E  K V    P C+  S E
Sbjct:   282 PISLRVSEKKMLDSIETFLGLGFSRDEFAKMVK-HFPPCIGLSTE 325

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2018042 AT1G62110 "AT1G62110" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 6.5e-24, P = 6.5e-24
 Identities = 80/318 (25%), Positives = 151/318 (47%)

Query:    35 NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRP 94
             NF  +++L+ +L +    A  IS K S +     P+ V     + GF+++ I   +T  P
Sbjct:    52 NFT-VSYLVDSLGLATKLAESISKKVSFVNK-GNPDLVLSLFRSYGFTNSQISSIITDYP 109

Query:    95 TILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVD 154
              +L  D +K+L  K++F +  G    +L + +S  P +      + L    + +K+I+  
Sbjct:   110 RLLLIDAEKSLDIKLQFLESRGASSPELTQIVSTVPKILGMKEGKSLGRYYDFVKEIIEA 169

Query:   155 DSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKEL 214
             D +++     +   C  L     +   +RN+  L+  G+    L  LL+   +  C KE 
Sbjct:   170 DKSSK-----YETLCQPLPEANRQGNKIRNVSVLRDLGVPQKLLFSLLISDAQPVCGKE- 223

Query:   215 KIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKA 274
                  + ++++MGF   +  FV  L  +    ++T   ++ +++ +GF+ E+V  MF+K 
Sbjct:   224 NFEESLKKVVEMGFDPTTSKFVQALRAVYRFTDKTIEERVNVYKGFGFAVEDVWAMFKKC 283

Query:   275 PLILKASEERLQLGLEFFLK--EIECEK-SVLVRIPICLACSIENRVIPRYRVFQII-MS 330
             P  L +SE+++   +E   K   +E E  SVL + P C+  S E +++    +F  +  S
Sbjct:   284 PYFLNSSEKKIGQTIETLKKCGLLEDEVISVLKKYPQCIGTS-EQKILNSIEIFLGLGFS 342

Query:   331 RGMFKKDCS-FPSMLLLS 347
             R  F      FP  L+LS
Sbjct:   343 RDEFITMVKRFPQCLILS 360

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036878 AT1G61990 "AT1G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 5.2e-22, P = 5.2e-22
 Identities = 74/281 (26%), Positives = 142/281 (50%)

Query:    39 LNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILF 98
             +++L+ +L + K  A  IS K S  +    P++V     + GF+D+ I   +T  P +L 
Sbjct:    55 VSYLVDSLGLSKKLAESISRKVS-FEDKVNPDSVLSLFRSYGFTDSQISTIITDYPLLLV 113

Query:    99 SDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNN 158
             +D  K L  K++  Q  G   S++ + +S  P +     ++ +    + +K I+V D+++
Sbjct:   114 ADAKKALGRKLQILQSRGASSSEITEIVSTVPRILG---KKSITVYYDAVKDIIVADTSS 170

Query:   159 EDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRH 218
                        + L   ++    +RN+  L+  G+    L  LLV + +  C KE     
Sbjct:   171 S----------YELPQGSQ-GNKIRNVSALRELGMPSRLLLPLLVSKSQPVCGKE-NFDA 218

Query:   219 LVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLIL 278
              + ++++MGF   +  FV  L +L  ++E+T   K+ +FRS GF+ ++V ++F+K P +L
Sbjct:   219 SLKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVL 278

Query:   279 KASEERLQLGLEFFLK--EIECEKSVLV-RIPICLACSIEN 316
             K S++++    E FL       E  ++V R P C+  S+E+
Sbjct:   279 KVSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVES 319

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2018057 AT1G62120 "AT1G62120" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 79/319 (24%), Positives = 148/319 (46%)

Query:     3 RLKLNPFPNSQ---NXXXXXXXXXXXXXXXTPNSTNFIFLNFLIKTLNIPKSRALPISNK 59
             R+ +N F N     N                    NF  +++L+ +L +    A  IS K
Sbjct:    21 RVSVNLFQNGSAFSNTFSSSAIAADVSSRDGRKGHNFT-VSYLVDSLGLATKVAESISMK 79

Query:    60 FSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVG 119
              S   +   P++V   L + GF+D+ I   + + P +L  D +K+L PK++F Q +G   
Sbjct:    80 VS-FDNKGNPDSVLSLLRSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASS 138

Query:   120 SDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKS 179
             S+L + +S  P +      + L    + +K I+  D +++       + C +L   +++ 
Sbjct:   139 SELTETVSAVPKILGKRKGKSLSRYYDFVKVIIEADKSSK-----LEKLCHSLPEGSKQE 193

Query:   180 GLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGL 239
               +RN+  L+  G+    L  LL+      C KE K +  + + +++GF   +  FV  L
Sbjct:   194 NKIRNLLVLREMGVPQRLLFSLLISDAGDVCGKE-KFKESLKKAVEIGFDPTTATFVKAL 252

Query:   240 VVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLK-EIEC 298
              VL  L+++    K    +  G + ++V  MF+K P IL  SE++++  +E FL      
Sbjct:   253 NVLYGLSDKGIENKFNACKRLGLAVDDVWAMFKKWPNILTKSEKKIENSVETFLGLGFSR 312

Query:   299 EKSVLV--RIPICLACSIE 315
             ++ +++  R P C+  S E
Sbjct:   313 DEFLMMVKRFPQCIGYSTE 331

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019409001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (654 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
pfam02536	345	pfam02536, mTERF, mTERF	3e-25
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-13
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	0.001

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  104 bits (261), Expect = 3e-25
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 19/289 (6%)

Query: 76  LHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAA 135
           L ++GF+D+ I   +   P +L +D +K L+PK++F Q  G   S+L K +S  P +   
Sbjct: 4   LRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGK 63

Query: 136 SLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVG 195
              + +    + LKKI+V D    D +    +   +L      +  +RN+  L+  G+  
Sbjct: 64  KGVKSISSVYDFLKKIIVADL---DKSSKLEKYPESLPQGNNGN-KIRNVSVLRELGVPP 119

Query: 196 SQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGL---VVLSCLNEETFGR 252
             L  LL+ +PR  C KE      + ++++MGF   +   V      ++L    ++T   
Sbjct: 120 KLLFSLLISRPRPVCGKE-VFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSS-DKTIKP 177

Query: 253 KLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECE-KSVLVRIPICLA 311
            +E  +S GFS E+V  + +K P +L +SE++     E        E  SV+ ++P  + 
Sbjct: 178 NVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFV- 236

Query: 312 CSIENRVIPRYRVFQII-MSR----GMFKKDCSFPSMLLLSEGNFLQKF 355
              E +++ +      +  SR     M K+    P +L LS     +K 
Sbjct: 237 SYSEQKILNKIEFLLGLGFSREEIAKMVKR---CPQLLGLSVEKVKKKT 282

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 76/304 (25%), Positives = 120/304 (39%), Gaps = 49/304 (16%)

Query: 75  FLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFA 134
           +L ++G +   I   +T  P IL   V   +KPK+++ + LGL    + + + K P +  
Sbjct: 202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILG 261

Query: 135 ASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIV 194
             LE  + P VE L +  V                        K  L   I       I+
Sbjct: 262 FDLEETVKPNVECLLEFGV-----------------------RKEALPSVIAQYPD--IL 296

Query: 195 GSQLSMLLVWQPRLFCYKELKI-RHLVSRLLDMGFSTNSRM--FVYGLVVLSCLNEETFG 251
           G  L   L  Q       +LKI      R+++       ++   V        LN     
Sbjct: 297 GLDLKAKLAEQQYWLT-SKLKIDPEDFGRVIE-------KLPQIVS-------LNRNVAL 341

Query: 252 RKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLA 311
           + +E  R  GFS ++V +M  + P IL  + E ++  LEFF KE++     LV  P    
Sbjct: 342 KHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFT 401

Query: 312 CSIENRVIPRYRVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYK 371
             +E+R+ PRY   + +  +G+    CS    L  S+  F Q+    F +  E   L   
Sbjct: 402 YGLESRIKPRY---ERVAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGEEMEPLFSM 455

Query: 372 GHKL 375
           G KL
Sbjct: 456 GGKL 459

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 63  IKSLEKPETVR------QFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLG 116
           +  LE P TV       +FLH +G +   I       P +L   V K + P +++ + LG
Sbjct: 80  LDGLELPSTVDVMRERVEFLHKLGLTIEDI----NEYPLVLGCSVKKNMIPVLDYLEKLG 135

Query: 117 LVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRR 167
           +  S L + + + P +  AS+   L P V+ L+ + V      D+ RV  R
Sbjct: 136 VTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQ---DIPRVLER 183

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.95
KOG1267	413	consensus Mitochondrial transcription termination	99.76
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.15
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.95
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	94.02
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	89.83
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.24

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.4e-58  Score=461.96  Aligned_cols=339  Identities=19%  Similarity=0.348  Sum_probs=306.0

Q ss_pred             CCchhhhhhhhhhhhcccCCCCC-CCchhHHHhHhhCCCChhhHHHHHhhccCCCCC---CChHHHHHHHHhCCCChHHH
Q 047553           11 NSQNFAIKSLFSFFASLSKTPNS-TNFIFLNFLIKTLNIPKSRALPISNKFSRIKSL---EKPETVRQFLHNVGFSDTHI   86 (377)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~---~~~~~~l~~L~~lG~~~~~i   86 (377)
                      ++.||.-.+++. ++.+-+++.. .-.+.++|| +++|++.+++.+++.++|.++..   .++.++++||+++|+++++|
T Consensus       100 ~s~G~~~~~i~~-~P~iL~~~v~~~l~Pvl~fL-~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i  177 (487)
T PLN03196        100 HKLGLTIEDINE-YPLVLGCSVKKNMIPVLDYL-EKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDI  177 (487)
T ss_pred             HHcCCChHHhcc-CcHHhhcCHhhhhHHHHHHH-HHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHH
Confidence            345665555552 2444444333 335578999 89999999999999999999963   46889999999999999999


Q ss_pred             HHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHH
Q 047553           87 QLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFR  166 (377)
Q Consensus        87 ~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~  166 (377)
                      ++++.++|++|++++++++.|+++||+++|++.+++++++.++|++|+++++++++|+++||+++|++   .++|++++.
T Consensus       178 ~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~---~~~I~~il~  254 (487)
T PLN03196        178 PRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLP---RLAVARILE  254 (487)
T ss_pred             HHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCC---HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999   999999999


Q ss_pred             hccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCCeeeEeeh-hhHHHHHHHHH-hcCCCCchh--hHHHHHHHH
Q 047553          167 RCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKE-LKIRHLVSRLL-DMGFSTNSR--MFVYGLVVL  242 (377)
Q Consensus       167 ~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~-~~l~~~v~~l~-~lG~~~~~~--~~~~~p~~l  242 (377)
                      ++|++|+++++ ++++|++++|+++|++++++..+++++|.+++.+. ++++++++++. ++|+++++.  ++.+.|.+ 
T Consensus       255 ~~P~iL~~sle-~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~i-  332 (487)
T PLN03196        255 KRPYILGFDLE-ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQI-  332 (487)
T ss_pred             hCCceeEcCHH-HhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchh-
Confidence            99999999998 78999999999999999999999999999999985 56999999985 799999986  34455554 


Q ss_pred             HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhH
Q 047553          243 SCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRY  322 (377)
Q Consensus       243 ~~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~  322 (377)
                      ...+++++++|++||+++||+.++|..|+.++|++|++|+++|++|++||+++||++.++|+.+|++|+||+|+||+|||
T Consensus       333 l~lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~  412 (487)
T PLN03196        333 VSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRY  412 (487)
T ss_pred             hcccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCccchhccchhhHHHHhcccCCCC
Q 047553          323 RVFQIIMSRGMFKKDCSFPSMLLLSEGNFLQKFVLSFGDD  362 (377)
Q Consensus       323 ~~l~~L~~~g~~~~~~~l~~~l~~s~~~F~~~~~~~~~~~  362 (377)
                      +++   .++|+   ++++.++|++||++|+++|+..|.|+
T Consensus       413 ~~L---~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~  446 (487)
T PLN03196        413 ERV---AKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEG  446 (487)
T ss_pred             HHH---HHcCC---CCCHHHHhccCHHHHHHHHhhhcccc
Confidence            975   58998   67999999999999999999999874

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.1e-50  Score=394.44  Aligned_cols=303  Identities=28%  Similarity=0.471  Sum_probs=187.5

Q ss_pred             HhhCCCChhhHHHHHhhccCCCCC---CChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCC
Q 047553           43 IKTLNIPKSRALPISNKFSRIKSL---EKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVG  119 (377)
Q Consensus        43 ~~~~Gls~~~~~~i~~~~P~ll~~---~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~  119 (377)
                      ++++|++++++.++++++|.++..   .++.++++||.++|++..|+++++.++|++|..+.+++|.|.++||+++|+++
T Consensus         4 ~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~   83 (345)
T PF02536_consen    4 LKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSD   83 (345)
T ss_dssp             HHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-H
T ss_pred             HHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCH
Confidence            356666666666666666665521   34556666666666666666666666666666665556666666666666666


Q ss_pred             chhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHHHcCCCchhHh
Q 047553          120 SDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLS  199 (377)
Q Consensus       120 ~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~  199 (377)
                      +++.+++.++|++|..+.+.++.+++.||+++|++   .+.+.+++..+|.++... +  ++.+.++++.++|++++++.
T Consensus        84 ~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~---~~~~~~~l~~~~~~~~~~-~--~~~~~v~~l~~lG~~~~~~~  157 (345)
T PF02536_consen   84 EDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVP---PSQIISLLISRPPLFLSS-E--KIKERVEFLKELGFDPEKIG  157 (345)
T ss_dssp             HHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT-----HHHHHHHHHH-CHHHHS--H--HHHCHHHHHCCCTSSHHHHC
T ss_pred             HHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCc---HHHHHHHHHhcCccccch-h--HHHHHHHHHHHhCCCchhhc
Confidence            66666666666666665555666666666666665   444444444444433333 2  24555555555555555555


Q ss_pred             hhhhhCCeeeEe-ehhhHHHHHHHHHhcCCCCchh--hHHH---------------------------------HHHHHH
Q 047553          200 MLLVWQPRLFCY-KELKIRHLVSRLLDMGFSTNSR--MFVY---------------------------------GLVVLS  243 (377)
Q Consensus       200 ~ll~~~P~il~~-s~~~l~~~v~~l~~lG~~~~~~--~~~~---------------------------------~p~~l~  243 (377)
                      +++..+|+++.. +++.+++++++|+++|++.+++  ++.+                                 .|.++ 
T Consensus       158 ~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il-  236 (345)
T PF02536_consen  158 RVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQIL-  236 (345)
T ss_dssp             CCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC----------------------------
T ss_pred             ccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccccccccccccc-
Confidence            555555433322 2344555555555555544433  2232                                 34333 


Q ss_pred             hCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhHH
Q 047553          244 CLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYR  323 (377)
Q Consensus       244 ~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~  323 (377)
                      ..+.+++.++++||.++||+.+|+++|+.++|+||++|.++|++|++||+++||++.++|+++|++|+||+|+||+|||+
T Consensus       237 ~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~  316 (345)
T PF02536_consen  237 SLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYE  316 (345)
T ss_dssp             THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHH
T ss_pred             ccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHH
Confidence            33567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCccchhccchhhHHH
Q 047553          324 VFQIIMSRGMFKKDCSFPSMLLLSEGNFLQ  353 (377)
Q Consensus       324 ~l~~L~~~g~~~~~~~l~~~l~~s~~~F~~  353 (377)
                      ++++|+++|. +.++++.+++.+||++|++
T Consensus       317 ~~~~l~~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  317 VLKVLKSKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHHTT--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             HHHHHHHCcC-CCCCCHHHHhhccHHHhcC
Confidence            9999999997 5689999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=4.8e-45  Score=366.02  Aligned_cols=307  Identities=18%  Similarity=0.256  Sum_probs=275.8

Q ss_pred             chhHHHhHhhCCCChhhHHHHHhhccCCCCC---CChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHH
Q 047553           36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSL---EKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFF  112 (377)
Q Consensus        36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~---~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL  112 (377)
                      ...++|| +++|++.+++.    ++|.++..   .++.++++||+++|+++.+|++++.++|++|.++++++|.|+++||
T Consensus        93 ~~~l~~L-~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL  167 (487)
T PLN03196         93 RERVEFL-HKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYL  167 (487)
T ss_pred             HHHHHHH-HHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHH
Confidence            3456888 88999999986    68999863   5788999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHHHcC
Q 047553          113 QHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCG  192 (377)
Q Consensus       113 ~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~lG  192 (377)
                      +++|++.+++++++.++|++|++++++++.|+++||+++|++   .+++++++.++|++|+++++ ++++|+++||+++|
T Consensus       168 ~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs---~~~i~~il~~~P~iL~~sve-~~i~P~v~fL~~lG  243 (487)
T PLN03196        168 QGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVA---PRDIGPMLTRFPEILGMRVG-NNIKPKVDYLESLG  243 (487)
T ss_pred             HHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCC---HHHHHHHHHhCcHHhhcChh-hhHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999   99999999999999999999 88999999999999


Q ss_pred             CCchhHhhhhhhCCeeeEeehh-hHHHHHHHHHhcCCCCchhh--HHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHH
Q 047553          193 IVGSQLSMLLVWQPRLFCYKEL-KIRHLVSRLLDMGFSTNSRM--FVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVL  268 (377)
Q Consensus       193 ~~~~~i~~ll~~~P~il~~s~~-~l~~~v~~l~~lG~~~~~~~--~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~  268 (377)
                      ++.++|.+++.++|++|+++.+ ++++++++|.++|++++++.  +.+.|.++....++++.++++||. ++|++.+++.
T Consensus       244 v~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~  323 (487)
T PLN03196        244 LPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFG  323 (487)
T ss_pred             CCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHH
Confidence            9999999999999999999975 89999999999999999874  455677776666789999999996 9999999999


Q ss_pred             HHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHH----hhCCccccccccccchhhHHHHHHHHHCCCCC-CCCCccch
Q 047553          269 QMFRKAPLILKASEERLQLGLEFFLKEIECEKSVL----VRIPICLACSIENRVIPRYRVFQIIMSRGMFK-KDCSFPSM  343 (377)
Q Consensus       269 ~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i----~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~-~~~~l~~~  343 (377)
                      .++.++|+++++|++++++|++||.+ +|++.++|    .++|++|++|.+ .|+++++|+..  +.|... .-...+.+
T Consensus       324 ~~v~k~P~il~lSe~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~-~l~~k~dFlvn--eMg~~~~~Iv~fP~~  399 (487)
T PLN03196        324 RVIEKLPQIVSLNRNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFFKK--EMKRPLKELVEFPAY  399 (487)
T ss_pred             HHHHhcchhhcccHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH-HHHHHHHHHHH--HhCCCHHHHHhChHH
Confidence            99999999999999999999999986 99999987    699999999995 99999998753  455532 23456778


Q ss_pred             hccc-hhhHHHHh
Q 047553          344 LLLS-EGNFLQKF  355 (377)
Q Consensus       344 l~~s-~~~F~~~~  355 (377)
                      +++| |++..-||
T Consensus       400 LsySLEkRI~PR~  412 (487)
T PLN03196        400 FTYGLESRIKPRY  412 (487)
T ss_pred             hccChhhhhHHHH
Confidence            8887 44544444

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.6e-37  Score=298.20  Aligned_cols=267  Identities=34%  Similarity=0.556  Sum_probs=218.1

Q ss_pred             HHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhc
Q 047553           74 QFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILV  153 (377)
Q Consensus        74 ~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~  153 (377)
                      ++|+++||+++||.++++++|.+|.+++++++.|+++||+++|++..++++++.+||++|..++++++.|.++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHhccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchh
Q 047553          154 DDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSR  233 (377)
Q Consensus       154 ~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~  233 (377)
                      +   ++++.+++.++|++|+.+.+ .++.+++++|+++|++.+.+..++...|..+... +++++.++++.++|++++..
T Consensus        82 s---~~d~~~~l~r~p~~l~~~~~-~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~-~~~~~~v~~l~~lG~~~~~~  156 (345)
T PF02536_consen   82 S---DEDIVKVLKRYPRILSFSVE-ENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS-EKIKERVEFLKELGFDPEKI  156 (345)
T ss_dssp             ----HHHHHHHHHH-SHHHHS----HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS--HHHHCHHHHHCCCTSSHHHH
T ss_pred             C---HHHHHHHHHhcchhhccchH-hhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch-hHHHHHHHHHHHhCCCchhh
Confidence            9   99999999999999999887 6899999999999999998889999999877666 88999999999999999987


Q ss_pred             --hHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHH----------------------------
Q 047553          234 --MFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEE----------------------------  283 (377)
Q Consensus       234 --~~~~~p~~l~~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~----------------------------  283 (377)
                        +...+|..+...+++.++++++||+++|++.+++.+++.++|.++.+|.+                            
T Consensus       157 ~~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il  236 (345)
T PF02536_consen  157 GRVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQIL  236 (345)
T ss_dssp             CCCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------
T ss_pred             cccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccccccccccccc
Confidence              67778888888999999999999999999999999999999999998875                            


Q ss_pred             -----HHHHHHHHHHHhhCCChHHH----hhCCccccccccccchhhHHHHHHHHHCCCCCC-CCCccchhccchh
Q 047553          284 -----RLQLGLEFFLKEIECEKSVL----VRIPICLACSIENRVIPRYRVFQIIMSRGMFKK-DCSFPSMLLLSEG  349 (377)
Q Consensus       284 -----~L~~k~~fL~~~~g~~~~~i----~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~~-~~~l~~~l~~s~~  349 (377)
                           +++++++||.+ +|++.++|    .++|++|++|.+ +++|+++|+.  .+.|...+ -...+.++.+|=+
T Consensus       237 ~~~~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e-~l~~k~~fl~--~~m~~~~~~i~~~P~~l~~sLe  308 (345)
T PF02536_consen  237 SLSEEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIE-KLKPKFEFLV--KEMGLPLEEIVEFPQYLSYSLE  308 (345)
T ss_dssp             THHHHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HH-HHHHHHHHHH--HCCT--HHHHHHSCHHHCS-HH
T ss_pred             ccchHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchh-hhhHHHHHHH--HHhCcCHHHHhhCCceeEechh
Confidence                 48899999987 99998885    679999999999 4999999874  35665422 2345667777753

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.95  E-value=7.7e-28  Score=239.11  Aligned_cols=288  Identities=26%  Similarity=0.379  Sum_probs=246.5

Q ss_pred             chhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhc
Q 047553           36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHL  115 (377)
Q Consensus        36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~l  115 (377)
                      ++.+.|++.++|++...+..+.+.. ......+++.++++|+++|+++.++..++..+|.++..+.++.+.|+..+|+..
T Consensus        59 ~f~~s~~~~s~~~~~~~~~~~~~~~-~~~~~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~  137 (413)
T KOG1267|consen   59 NFESSYLVDSLGLSIKLARKLSREV-SSEDSVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSL  137 (413)
T ss_pred             CcceeeeccccccchhhHHHHHHHH-HhhhccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhcc
Confidence            6788999999998888888777655 444457899999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhhhcccccchhhhhccchhHHHHHHHHh--cCCC------------------------------CchHHH-
Q 047553          116 GLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKIL--VDDS------------------------------NNEDLT-  162 (377)
Q Consensus       116 G~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g--~~~~------------------------------~~~~i~-  162 (377)
                      |++...+++++...|.+|..+...++.+.++|+++++  ..++                              ..+.+. 
T Consensus       138 g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~  217 (413)
T KOG1267|consen  138 GLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKS  217 (413)
T ss_pred             CccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHH
Confidence            9999999999999999999887788999999998874  1100                              022233 


Q ss_pred             -------------------------------HHHHhccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCCeeeEe
Q 047553          163 -------------------------------RVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCY  211 (377)
Q Consensus       163 -------------------------------~~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~  211 (377)
                                                     +++.+.|.+++++.+ +++++++++|+++|++.+++..|+.++|+++++
T Consensus       218 ~l~~~~~~~~~~~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~-~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~  296 (413)
T KOG1267|consen  218 LLESQPRPVLLYLKLKARLPFLLTLGFDPKTREFVKAPILLSYSSE-KTLEPKVEVLKSLGFSREEIWKMVKKCPQILGY  296 (413)
T ss_pred             HHhcCccceeeehhhhhhhhhHHHhccCCchhHHHhhhhhhccccc-ccHHHHHHHHHHcCCCHHHHHHHHHhCchheEe
Confidence                                           223345555666677 789999999999999999999999999999999


Q ss_pred             ehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHH-HHHHHHH
Q 047553          212 KELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEE-RLQLGLE  290 (377)
Q Consensus       212 s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~-~L~~k~~  290 (377)
                      +.+++..+++++.+.   .++  +.+.|.++ ..++..+.++++|+..+|++..|+..++.++|+++++|.+ .++.+.+
T Consensus       297 s~~~~~~~~~~~~~~---~~~--~~k~p~~l-~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~  370 (413)
T KOG1267|consen  297 SVKKNLKTTEYLLKN---PKH--ILKFPQLL-RSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYE  370 (413)
T ss_pred             ehhhhhHHHHHHHhc---chh--hhhhhhhh-hccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHH
Confidence            999888888888766   222  55566666 7789999999999999999999999999999999999998 8899999


Q ss_pred             HHHHhhCCChHHHhhCCccccccccccchhhHHHHHHHHHC
Q 047553          291 FFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSR  331 (377)
Q Consensus       291 fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~  331 (377)
                      |+.+.|+++.+.++.+|++++|++|+|+.||+.+..++..+
T Consensus       371 ~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  371 YLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             HHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            99999999999999999999999999999999988766443

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.76  E-value=3e-18  Score=170.51  Aligned_cols=186  Identities=27%  Similarity=0.396  Sum_probs=151.5

Q ss_pred             chhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhh
Q 047553          104 TLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLR  183 (377)
Q Consensus       104 ~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~  183 (377)
                      +-...+++|+++|++..++..++..+|.++..+.++.+.|+..+|+..|.+   ...+..++...|.+|+.+.+ .++.+
T Consensus        90 ~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~---~s~l~~i~s~~~~il~~~~~-~~~~~  165 (413)
T KOG1267|consen   90 NPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLP---SSELSSIVSVVPKILLKSKG-ESLST  165 (413)
T ss_pred             CcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCcc---ccccchhhhccHHHHHhhcC-Cchhh
Confidence            466788999999999999999999999999999999999999999999998   66666666665655554333 23433


Q ss_pred             -----------------------------------hHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCC
Q 047553          184 -----------------------------------NIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGF  228 (377)
Q Consensus       184 -----------------------------------~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~  228 (377)
                                                         ++++++++|+.+.++..++..+|+.+.... .+...+.++..+|+
T Consensus       166 ~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~  244 (413)
T KOG1267|consen  166 FIEFLKSIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLGF  244 (413)
T ss_pred             HHHHhhccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhcc
Confidence                                               455555566777777777777777766554 77888889999999


Q ss_pred             CCchhhHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHH
Q 047553          229 STNSRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLK  294 (377)
Q Consensus       229 ~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~  294 (377)
                      ++.+.++++++.++...+++++++|+++|+++||+.+||++|+.++|++|++|++++..++.|+.+
T Consensus       245 ~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~  310 (413)
T KOG1267|consen  245 DPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLK  310 (413)
T ss_pred             CCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999864433444333

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.15  E-value=0.00038  Score=41.97  Aligned_cols=30  Identities=33%  Similarity=0.549  Sum_probs=26.5

Q ss_pred             HHHHhCCcccccCHHHHHHHHHHHHHhhCCC
Q 047553          269 QMFRKAPLILKASEERLQLGLEFFLKEIECE  299 (377)
Q Consensus       269 ~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~  299 (377)
                      +++.++|.+|++|+++++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            4788999999999999999999998 68874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.95  E-value=0.00044  Score=41.66  Aligned_cols=28  Identities=43%  Similarity=0.731  Sum_probs=14.7

Q ss_pred             HHHhCCCeeccCCCCchhhHHHHHHhcCC
Q 047553           89 TVTSRPTILFSDVDKTLKPKIEFFQHLGL  117 (377)
Q Consensus        89 ii~~~P~lL~~~~~~~l~~~i~fL~~lG~  117 (377)
                      ++.++|++|..+ ++++.++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            445555555555 3345555555555554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=94.02  E-value=0.67  Score=44.89  Aligned_cols=202  Identities=15%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             HhCCCChHHHHHHHHhCCCeeccCCC---C----chhhHHHHHH--hcCCCCchhhhhhhcccccchhhhhccc-hhHHH
Q 047553           77 HNVGFSDTHIQLTVTSRPTILFSDVD---K----TLKPKIEFFQ--HLGLVGSDLGKFISKNPSLFAASLERKL-IPCVE  146 (377)
Q Consensus        77 ~~lG~~~~~i~~ii~~~P~lL~~~~~---~----~l~~~i~fL~--~lG~s~~~l~~ii~~~P~lL~~s~~~~l-~p~v~  146 (377)
                      ..+|+....+...+.++|.++....+   .    .+-+...-|.  +..+-.+.-..++.+=-.+|.++.++.| ..++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            46899778899999999999876431   1    1445555553  2222222224555555567777776553 23455


Q ss_pred             HHH-HHhcCCCCchHHHHHHHhccccccccc-cc-cchhhhHHHHHHcCCCchhHhhhh-----------------hhCC
Q 047553          147 ILK-KILVDDSNNEDLTRVFRRCCWNLIMDT-EK-SGLLRNIEYLKSCGIVGSQLSMLL-----------------VWQP  206 (377)
Q Consensus       147 ~L~-~~g~~~~~~~~i~~~l~~~P~lL~~~~-~~-~~l~~~v~~L~~lG~~~~~i~~ll-----------------~~~P  206 (377)
                      .++ ++|++   ++-...++.+||..+.... ++ .....-+.|=.++.++.-+-....                 ..+|
T Consensus       125 ~l~~dLGLP---~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp  201 (335)
T PF11955_consen  125 HLRRDLGLP---DDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFP  201 (335)
T ss_pred             HHHHHcCCC---hhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCC
Confidence            565 68998   8888889999999886532 10 112222222122334333222221                 1222


Q ss_pred             eeeEeehhhHHHHHHHHHhcC----------CCCchh-hHHHHHHHHH---hC--CHHHHHHHHHHHH-HcCCCHHHHHH
Q 047553          207 RLFCYKELKIRHLVSRLLDMG----------FSTNSR-MFVYGLVVLS---CL--NEETFGRKLELFR-SYGFSKEEVLQ  269 (377)
Q Consensus       207 ~il~~s~~~l~~~v~~l~~lG----------~~~~~~-~~~~~p~~l~---~~--s~~~l~~k~~~L~-~lG~s~~~v~~  269 (377)
                      .=+.. ..+..+.++-++++-          +++++. +-.++..++.   ..  .......++..|+ ++|++. .+..
T Consensus       202 ~G~~l-~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~-k~~~  279 (335)
T PF11955_consen  202 KGFRL-KKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQ-KFRR  279 (335)
T ss_pred             CCccc-cHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcH-HHHH
Confidence            11111 134566666666653          333332 2334433321   21  2223456677776 899984 6888


Q ss_pred             HHHhCCcccccCHH
Q 047553          270 MFRKAPLILKASEE  283 (377)
Q Consensus       270 ~i~~~P~iL~~s~~  283 (377)
                      ++.+||.||-.|..
T Consensus       280 ~l~rHPgIFYvS~k  293 (335)
T PF11955_consen  280 LLLRHPGIFYVSLK  293 (335)
T ss_pred             HHHhCCCeEEEecc
Confidence            99999999998864

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=89.83  E-value=1.6  Score=38.09  Aligned_cols=16  Identities=25%  Similarity=0.563  Sum_probs=11.9

Q ss_pred             HHHHHHcCCCHHHHHH
Q 047553          254 LELFRSYGFSKEEVLQ  269 (377)
Q Consensus       254 ~~~L~~lG~s~~~v~~  269 (377)
                      .+||.++|++.+++..
T Consensus       151 ~~~l~~~g~~~~~~~~  166 (172)
T cd04790         151 QEFLQSLGIPEDEIER  166 (172)
T ss_pred             HHHHHHcCCCHHHHHH
Confidence            5677888888877764

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.24  E-value=1.2  Score=39.00  Aligned_cols=117  Identities=9%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             hHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHH----HhcCCCCchHHHHHHHhccccccccccccchh
Q 047553          107 PKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKK----ILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLL  182 (377)
Q Consensus       107 ~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~----~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~  182 (377)
                      ..|..|+++|++-++|..++.....    +....+..+.+.+.+    +--.   .+.+..++...+..-....  -+..
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~----~~~~~L~~~~~~l~~ei~~L~~~---~~~l~~ll~~~~~~~~~~~--V~~~  119 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGD----DATDVLRRRLAELNREIQRLRQQ---QRAIATLLKQPTLLKEQRL--VTKE  119 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccccc--CCHH
Confidence            6777888999999999998876553    222234445544443    2233   3444554444333311111  1245


Q ss_pred             hhHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHH
Q 047553          183 RNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYG  238 (377)
Q Consensus       183 ~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~  238 (377)
                      ..++.++..|+++++..+.-..+-   ...|   +.=.+||..+|++++++.-.+.
T Consensus       120 ~w~~l~~~~g~~~~~m~~wh~~fe---~~~p---~~h~~~l~~~g~~~~~~~~ir~  169 (172)
T cd04790         120 KWVAILKAAGMDEADMRRWHIEFE---KMEP---EAHQEFLQSLGIPEDEIERIRA  169 (172)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHH---HhCc---HHHHHHHHHcCCCHHHHHHHHH
Confidence            566667778888877543322210   0111   1235789999999888754443

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		1e-05
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		1e-05

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 213 ELKIRHLVSRLLDMGFSTNS-RMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMF 271
           E  I+ ++  L D+G   N    F+     +   + E    ++    S  FSK +V QM 
Sbjct: 66  EKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMV 125
Query: 272 RKAPLILKASEERLQLGLEFFLKEIECE----KSVLVRIPICLACSIE 315
           RKAP +L  S ERL   L FF KE+E      + ++VR+P  L  S+E
Sbjct: 126 RKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE 173

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 248 ETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECE----KSVL 303
           E    ++    S  FSK +V QM RKAP +L  S ERL   L FF KE+E      + ++
Sbjct: 74  ENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLV 133
Query: 304 VRIPICLACSIE 315
           VR+P  L  S+E
Sbjct: 134 VRLPRLLTGSLE 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-46
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-11
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-25
3mva_O	343	Transcription termination factor, mitochondrial; a	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  159 bits (403), Expect = 1e-46
 Identities = 48/302 (15%), Positives = 102/302 (33%), Gaps = 42/302 (13%)

Query: 69  PETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISK 128
                Q L  +G   + I+    +   +L  D +K +K  + F + +G+  + LG F++K
Sbjct: 5   HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTK 64

Query: 129 NPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYL 188
           N ++F+  LE  L   V  L           D+ ++ R+  + L    E+  L   + + 
Sbjct: 65  NHAIFSEDLE-NLKTRVAYLHSKNFSK---ADVAQMVRKAPFLLNFSVER--LDNRLGFF 118

Query: 189 KSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEE 248
           +                                  L++       + V    +L+   E 
Sbjct: 119 QKE--------------------------------LELSVKKTRDLVVRLPRLLTGSLEP 146

Query: 249 TFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPI 308
                       GF   E+  M  + P +L A++ +L    +F    +     ++V+ P 
Sbjct: 147 VKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQ 206

Query: 309 CLACSIENRVIPRYRVFQIIMSRGMFKKD---CSFPSMLLLSEGNFLQKFVLSFGDDAEE 365
                +  +V  R+     +             S   ++ + +  F ++   +   D E+
Sbjct: 207 VFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEK 265

Query: 366 LL 367
            L
Sbjct: 266 FL 267

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 16/211 (7%)

Query: 65  SLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGK 124
            LE  +T   +LH+  FS   +   V   P +L   V++       F + L L       
Sbjct: 72  DLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRD 131

Query: 125 FISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRN 184
            + + P L   SLE           ++        ++  +  R    L  +  K  L   
Sbjct: 132 LVVRLPRLLTGSLEPVKENMKVYRLELGFKH---NEIQHMITRIPKMLTANKMK--LTET 186

Query: 185 IEYLKSCGIVGSQLSMLLVWQPRLFCY--KELKIRHLVSRLLDMGFSTNSRMFVYGLVVL 242
            +++ +  ++     + +V  P++F     ++K RHL    L       ++     L  L
Sbjct: 187 FDFVHN--VMSIPHHI-IVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKL 243

Query: 243 SCLNEETFGRKLELFRSYGFSKEEVLQMFRK 273
             + +E F  +         +  +  + F K
Sbjct: 244 VSIPDEIFCEE------IAKASVQDFEKFLK 268

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  104 bits (260), Expect = 2e-25
 Identities = 43/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%)

Query: 52  RALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEF 111
               +    +  + L+  + + + L  +G     I +    +P +    +    +    F
Sbjct: 3   MLFGVKCHNTDSEPLKNEDLL-KNLLTMGV---DIDMARKRQPGVFHRMITN-EQDLKMF 57

Query: 112 FQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWN 171
               G     +   IS+ P     + E  L    ++ +KI+  D    ++  +  R   +
Sbjct: 58  LLSKGASKEVIASIISRYPRAITRTPEN-LSKRWDLWRKIVTSD---LEIVNILERSPES 113

Query: 172 LIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTN 231
                    L  NI++L S G+    L  LL   PR F       + +V  L   G S  
Sbjct: 114 FFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLG 173

Query: 232 SRMFVYGLVVLSCLN-------EETFGRKLELFRS-YGFSKEEVLQMF-RKAPLILKASE 282
                  +  +   N        +     +E  RS +  + EE+L +       IL  S 
Sbjct: 174 HNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSN 233

Query: 283 ERLQLGLEFFLKEIECE-------KSVLVRIPICLACSIEN 316
           +  +       +++          +  ++  P  +  + + 
Sbjct: 234 DYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK 274

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 39  LNFLIKTLNIPKSRAL-------PISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVT 91
           + FL  T N+     L             S   +      +++ L ++G ++  +Q  V 
Sbjct: 203 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL 262

Query: 92  SRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKK 150
           S P ++F    K    KI+      +  S     I +NP +  +S+   L   ++ L  
Sbjct: 263 SYPDVIFLAEKK-FNDKIDCLMEENISISQ----IIENPRVLDSSIST-LKSRIKELVN 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 6e-09
 Identities = 62/388 (15%), Positives = 121/388 (31%), Gaps = 113/388 (29%)

Query: 16  AIKSLFSFFASLSKTPNSTNFIFL--------NFLIKTL-NIPKSRALPISNKFSRIKSL 66
           A+      F +L          F+         FL+  +    +  ++            
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM----------T 109

Query: 67  EKPETVRQFLHNVG--FSDTHIQLTVTSRP-------TILFSDVDKTLKPKIEFFQHLGL 117
                 R  L+N    F+  ++     SR          L       L+P        G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLE-----LRPAKNVLID-GV 158

Query: 118 VGSDLGKFISKNPSLFAA----SLERKLIPCVEI----LKKILVDDSNNEDLTRVFRRCC 169
           +GS  GK      +  A     S + +     +I    LK     ++  E L ++  +  
Sbjct: 159 LGS--GK------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 170 WNLIMDTEKSGLLR-NIEYLKSCGIVGSQLSMLLVWQPRLFCYKE--LKIRHLV--SRLL 224
            N    ++ S  ++  I  +++      +L  LL  +P    Y+   L + + V  ++  
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQA------ELRRLLKSKP----YENCLLVLLN-VQNAKAW 259

Query: 225 DMGFSTNSRMFVYGLV------VLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKA---- 274
           +  F+ + ++    L+      V   L+  T         S   + +EV  +  K     
Sbjct: 260 NA-FNLSCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 275 ------------PLILKASEERLQLGL---EFFLKEIECEKSVLVRIPICLAC--SIENR 317
                       P  L    E ++ GL   + + K + C+K +   I   L      E R
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDK-LTTIIESSLNVLEPAEYR 372

Query: 318 VIPRYRVFQIIMSRGMFKKDCSFPSMLL 345
               +    +      F      P++LL
Sbjct: 373 --KMFDRLSV------FPPSAHIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 57/324 (17%), Positives = 104/324 (32%), Gaps = 80/324 (24%)

Query: 2   QRLKLNPFPNSQNFAIKSLFSFFASLSKTPNSTNFIFLNFLIKTLNIPK-SRALPISNKF 60
           + L  NP        + S+ +   S+     + +        K +N  K +  +  S   
Sbjct: 321 EVLTTNPR------RL-SIIA--ESIRDGLATWDNW------KHVNCDKLTTIIESS--- 362

Query: 61  SRIKSLEKPETVRQFLHNVG-F-SDTHIQLTVTSRPTILFSDVDKTLKPKI-EFFQHLGL 117
             +  LE P   R+    +  F    HI   + S   +++ DV K+    +        L
Sbjct: 363 --LNVLE-PAEYRKMFDRLSVFPPSAHIPTILLS---LIWFDVIKSDVMVVVNKLHKYSL 416

Query: 118 VGSDLGKFISKNPSLF---------AASLERKLIPCVEILKKILVDDSNNEDLTRVFRRC 168
           V     +     PS++           +L R ++    I K     DS++     + +  
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLDQYF 473

Query: 169 CWNL------IMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSR 222
             ++      I   E+  L R + +L                    F + E KIRH  + 
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMV-FLD-------------------FRFLEQKIRHDSTA 513

Query: 223 LLDMGFSTN--SRMFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKA 280
               G   N   ++  Y   +  C N+  + R +     +    EE L   +   L    
Sbjct: 514 WNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTDL---- 567

Query: 281 SEERLQLGLEFFLKEI--ECEKSV 302
               L++ L    + I  E  K V
Sbjct: 568 ----LRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.95
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.43
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.77
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	90.32
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	89.74
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	86.23
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	86.09
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	85.77
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	84.62
2w84_A	70	Peroxisomal membrane protein PEX14; zellweger synd	80.53

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3.5e-53  Score=410.00  Aligned_cols=310  Identities=14%  Similarity=0.202  Sum_probs=271.3

Q ss_pred             CCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHH
Q 047553           32 NSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEF  111 (377)
Q Consensus        32 ~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~f  111 (377)
                      ..++..+|+|| .++|++.+++.+..++. ++.++++++++++||+++|++++||++++.++|.+|.++++ +|.|+++|
T Consensus        16 ~~~~~~~v~~L-~s~Gl~~~~~~~~~p~l-~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~f   92 (343)
T 3mva_O           16 PLKNEDLLKNL-LTMGVDIDMARKRQPGV-FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDL   92 (343)
T ss_dssp             ----CCHHHHH-HHHTCCHHHHHHHCGGG-GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHH
T ss_pred             ccccHHHHHHH-HHcCCCHHHHHHhCchh-hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHH
Confidence            34566799999 99999988876654433 23356899999999999999999999999999999999965 79999999


Q ss_pred             HHhcCCCCchhhhhhhcccccchhhhh-ccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHHH
Q 047553          112 FQHLGLVGSDLGKFISKNPSLFAASLE-RKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKS  190 (377)
Q Consensus       112 L~~lG~s~~~l~~ii~~~P~lL~~s~~-~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~  190 (377)
                      |+++|+++++++++|.++|++|..+.+ +++.|+++||+++|++   .++|++++.++|++|+++++ + +++++++|++
T Consensus        93 L~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~---~~~i~~ll~~~P~il~~~~e-~-~~~~v~~L~~  167 (343)
T 3mva_O           93 WRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLT---RKCLCRLLTNAPRTFSNSLD-L-NKQMVEFLQA  167 (343)
T ss_dssp             HTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCC---HHHHHHHHHHCGGGGTSCHH-H-HHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCC---HHHHHHHHHhCChhheeCHH-H-hhHHHHHHHH
Confidence            999999999999999999995444444 5899999999999999   99999999999999999998 6 5999999998


Q ss_pred             cCCC------chhHhhhhhhCCeeeEeehhhHHHHHHHHHh-cCCCCchh--hHHHHHHHHHhCCHHHHHHHHHHHH---
Q 047553          191 CGIV------GSQLSMLLVWQPRLFCYKELKIRHLVSRLLD-MGFSTNSR--MFVYGLVVLSCLNEETFGRKLELFR---  258 (377)
Q Consensus       191 lG~~------~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~-lG~~~~~~--~~~~~p~~l~~~s~~~l~~k~~~L~---  258 (377)
                      +|++      .+.|.++++++|.+++++.++++++++|+++ +|+++++.  ++.+.+..+...+.+.++++++++.   
T Consensus       168 lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~  247 (343)
T 3mva_O          168 AGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKL  247 (343)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHH
T ss_pred             hCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHH
Confidence            7764      7789999999999999999999999999995 99999875  3333333444567889999997776   


Q ss_pred             -HcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhHHHHHHHHHCCCCCCC
Q 047553          259 -SYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGMFKKD  337 (377)
Q Consensus       259 -~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~~~~~  337 (377)
                       ++||+.+||.+|+.++|++|++|+++|++|++||++ ||++.++|+++|++|+||+| ||+|||+   +|+++|+   +
T Consensus       248 ~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~---~L~~~g~---~  319 (343)
T 3mva_O          248 FSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIK---ELVNAGC---N  319 (343)
T ss_dssp             HTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHH---HHHTTTC---C
T ss_pred             HHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHH---HHHHCCC---C
Confidence             799999999999999999999999999999999999 99999999999999999999 9999997   5568998   4


Q ss_pred             CCcc--chhccchhhHHHHhcc
Q 047553          338 CSFP--SMLLLSEGNFLQKFVL  357 (377)
Q Consensus       338 ~~l~--~~l~~s~~~F~~~~~~  357 (377)
                      +++.  ++|++||++|.++|.+
T Consensus       320 ~~~~~~~~l~~s~~~F~~~~~~  341 (343)
T 3mva_O          320 LSTLNITLLSWSKKRYEAKLKK  341 (343)
T ss_dssp             SSSSCGGGGGSCHHHHHHHHHH
T ss_pred             CCCCcchhhcCCHHHHHHHHhc
Confidence            5555  9999999999999864

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2e-48  Score=364.89  Aligned_cols=257  Identities=19%  Similarity=0.315  Sum_probs=238.4

Q ss_pred             HHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHH
Q 047553           70 ETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILK  149 (377)
Q Consensus        70 ~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~  149 (377)
                      .+++++|.++|++.+++++....+|.+|.+++++++.|+++||+++|++++++++++.++|.+|.+++++ +.|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4689999999999999988888888889999998999999999999999999999999999999999997 999999999


Q ss_pred             HHhcCCCCchHHHHHHHhccccccccccccchhhhHHHH-HHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCC
Q 047553          150 KILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYL-KSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGF  228 (377)
Q Consensus       150 ~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L-~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~  228 (377)
                      ++|++   +++|++++.++|++|+++++ + ++++++|| +++|++.+++.+++.++|++++.+.+              
T Consensus        85 ~~Gls---~~~i~~~l~~~P~lL~~s~~-~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e--------------  145 (270)
T 3m66_A           85 SKNFS---KADVAQMVRKAPFLLNFSVE-R-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE--------------  145 (270)
T ss_dssp             HTTCC---HHHHHHHHHHSTTGGGSCHH-H-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH--------------
T ss_pred             HcCCC---HHHHHHHHHhCCHHHcCCHH-H-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH--------------
Confidence            99999   99999999999999999998 5 99999999 57999999999999999999987753              


Q ss_pred             CCchhhHHHHHHHHHhCCHHHHHHHHHHH-HHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCC
Q 047553          229 STNSRMFVYGLVVLSCLNEETFGRKLELF-RSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIP  307 (377)
Q Consensus       229 ~~~~~~~~~~p~~l~~~s~~~l~~k~~~L-~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P  307 (377)
                                          +++++++++ .++||+.++|.+++.++|++|++|++++++|++||+++||++.++|+++|
T Consensus       146 --------------------~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P  205 (270)
T 3m66_A          146 --------------------PVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFP  205 (270)
T ss_dssp             --------------------HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCG
T ss_pred             --------------------HHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCc
Confidence                                456677866 49999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccchhhHHHHHHHHHCCCCCCC---CCccchhccchhhHHHHhcccCCCChHHHH
Q 047553          308 ICLACSIENRVIPRYRVFQIIMSRGMFKKD---CSFPSMLLLSEGNFLQKFVLSFGDDAEELL  367 (377)
Q Consensus       308 ~~L~~Sle~ri~pR~~~l~~L~~~g~~~~~---~~l~~~l~~s~~~F~~~~~~~~~~~~~~~~  367 (377)
                      ++|+||+| ||+|||+++++|.++|+.+++   +++.+++.+||++|+++|++.+.|++....
T Consensus       206 ~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~  267 (270)
T 3m66_A          206 QVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFL  267 (270)
T ss_dssp             GGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHH
T ss_pred             hHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHH
Confidence            99999999 999999999999999997554   677789999999999999999987665443

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.4e-38  Score=307.73  Aligned_cols=303  Identities=17%  Similarity=0.225  Sum_probs=250.5

Q ss_pred             cccCCCCCCchhhhhhhhhhhhcc-cCCCCCCCchhHHHhHhhCCCChhhHHHHHhhccCCCCC--CChHHHHHHHHhCC
Q 047553            4 LKLNPFPNSQNFAIKSLFSFFASL-SKTPNSTNFIFLNFLIKTLNIPKSRALPISNKFSRIKSL--EKPETVRQFLHNVG   80 (377)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~--~~~~~~l~~L~~lG   80 (377)
                      .|++++ ++.|+....+...+..+ ..++.+++ .+++|| +++|++.+++.+++.++|.++..  +++.++++||+++|
T Consensus        21 ~~v~~L-~s~Gl~~~~~~~~~p~l~~~s~~~~~-~vl~fL-~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG   97 (343)
T 3mva_O           21 DLLKNL-LTMGVDIDMARKRQPGVFHRMITNEQ-DLKMFL-LSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIV   97 (343)
T ss_dssp             CHHHHH-HHHTCCHHHHHHHCGGGGGCSCCCHH-HHHHHH-HHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTS
T ss_pred             HHHHHH-HHcCCCHHHHHHhCchhhccCcccHH-HHHHHH-HHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcC
Confidence            344455 56788777776666666 33444443 456888 89999999999999999999853  45778999999999


Q ss_pred             CChHHHHHHHHhCCCeeccCCC-CchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcC-----
Q 047553           81 FSDTHIQLTVTSRPTILFSDVD-KTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVD-----  154 (377)
Q Consensus        81 ~~~~~i~~ii~~~P~lL~~~~~-~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~-----  154 (377)
                      ++++++++++.++|++|..+.+ +++.|+++||+++|++.+++++++.++|+++++++++. +++++||+++|++     
T Consensus        98 ~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~  176 (343)
T 3mva_O           98 TSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHND  176 (343)
T ss_dssp             SCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSC
T ss_pred             CCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCc
Confidence            9999999999999995544445 48999999999999999999999999999999999865 9999999999873     


Q ss_pred             CCCchHHHHHHHhccccccccccccchhhhHHHHHH-cCCCchhHhhhhhhC-CeeeEeehhhHHHHHHHHH----hcCC
Q 047553          155 DSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKS-CGIVGSQLSMLLVWQ-PRLFCYKELKIRHLVSRLL----DMGF  228 (377)
Q Consensus       155 ~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~-lG~~~~~i~~ll~~~-P~il~~s~~~l~~~v~~l~----~lG~  228 (377)
                      +  ++.|.+++.++|.+|+++ + ++++++++||++ +|++.+++..++... |.+++.+.+.+++++.++.    ++|+
T Consensus       177 p--~~~I~~il~~~P~iL~~s-~-~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          177 P--ADFVRKIIFKNPFILIQS-T-KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             H--HHHHHHHHHHCGGGGGSC-H-HHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred             H--HHHHHHHHHhCChHhcCC-H-HHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence            2  568999999999999999 5 679999999995 999999999999875 5888899888888887665    6999


Q ss_pred             CCchh--hHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhC
Q 047553          229 STNSR--MFVYGLVVLSCLNEETFGRKLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRI  306 (377)
Q Consensus       229 ~~~~~--~~~~~p~~l~~~s~~~l~~k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~  306 (377)
                      +++++  ++.+.|.++ ..+.+++++|++||.++|++.++    |.++|++|++|.++|++|++||.+ .|++.+.  .+
T Consensus       253 s~~ev~~~v~~~P~il-~~s~~~l~~k~~fl~~mg~~~~~----i~~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~  324 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVI-FLAEKKFNDKIDCLMEENISISQ----IIENPRVLDSSISTLKSRIKELVN-AGCNLST--LN  324 (343)
T ss_dssp             CHHHHHHHHHTCGGGG-GSCHHHHHHHHHHHHTTTCCHHH----HHHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SC
T ss_pred             CHHHHHHHHHhCCchh-cccHHHHHHHHHHHHHcCCCHHH----HHhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--Cc
Confidence            99987  667777766 56788999999999999999986    469999999999999999999976 7876431  11


Q ss_pred             CccccccccccchhhHH
Q 047553          307 PICLACSIENRVIPRYR  323 (377)
Q Consensus       307 P~~L~~Sle~ri~pR~~  323 (377)
                      -.+|++| |++..-|+.
T Consensus       325 ~~~l~~s-~~~F~~~~~  340 (343)
T 3mva_O          325 ITLLSWS-KKRYEAKLK  340 (343)
T ss_dssp             GGGGGSC-HHHHHHHHH
T ss_pred             chhhcCC-HHHHHHHHh
Confidence            2777777 335554443

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=288.48  Aligned_cols=222  Identities=13%  Similarity=0.224  Sum_probs=176.0

Q ss_pred             hhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhh
Q 047553          105 LKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRN  184 (377)
Q Consensus       105 l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~  184 (377)
                      +...+++|.++|+++++|++++.++|.++..    ++.+.+.||..+|++   .++|+++|.++|++|+++++  +++++
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls---~e~V~kiL~k~P~lL~~s~e--~L~~~  116 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLN---PEPVCVVLKKSPQLLKLPIM--QMRKR  116 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCC---HHHHHHHHHHCGGGGGSCHH--HHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCC---HHHHHHHHHhChhhccCCHH--HHHHH
Confidence            5556666777777777777777777777643    345667777777777   77777777777777777775  37777


Q ss_pred             HHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCC
Q 047553          185 IEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFS  263 (377)
Q Consensus       185 v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s  263 (377)
                      ++||+++|++.+++.+++.++|++++++.+                                  .++.++.+|. ++||+
T Consensus       117 l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e----------------------------------~i~~~v~~L~~~lGfS  162 (335)
T 4fp9_B          117 SSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ----------------------------------DINDTVRLLKEKCLFT  162 (335)
T ss_dssp             HHHHHHTTCTTTTHHHHHHHCGGGGTSCHH----------------------------------HHHHHHHHHHHTSCCC
T ss_pred             HHHHHHcCCCHHHHHHHHHhCchhhccChH----------------------------------HHHHHHHHHHHHcCCC
Confidence            777777777777777777777777766543                                  3445566665 89999


Q ss_pred             HHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCChHHHhhCCccccccccccchhhHHHHHHHHHCCC-------CCC
Q 047553          264 KEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECEKSVLVRIPICLACSIENRVIPRYRVFQIIMSRGM-------FKK  336 (377)
Q Consensus       264 ~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~~g~-------~~~  336 (377)
                      .++|.+|+.++|+||++|.++|++|++||+++||+++++|++ |++|+||++ ||+|||.||+.|..-..       ..+
T Consensus       163 ~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~  240 (335)
T 4fp9_B          163 VQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP  240 (335)
T ss_dssp             HHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSC
T ss_pred             HHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCC
Confidence            999999999999999999999999999999999999999997 999999999 99999998876533211       113


Q ss_pred             CCCccchhccchhhHHHHhcccCCCChHHHHHHHh
Q 047553          337 DCSFPSMLLLSEGNFLQKFVLSFGDDAEELLLSYK  371 (377)
Q Consensus       337 ~~~l~~~l~~s~~~F~~~~~~~~~~~~~~~~~~y~  371 (377)
                      +++|.+++..||++||.++++...+++..+.+.+.
T Consensus       241 npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~~~  275 (335)
T 4fp9_B          241 NPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLA  275 (335)
T ss_dssp             CCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            56899999999999999999999888877777664

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=3.2e-34  Score=268.37  Aligned_cols=213  Identities=15%  Similarity=0.228  Sum_probs=194.0

Q ss_pred             chhHHHhHhhCCCChhhHHHHHhhccCCCCC---CChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHH
Q 047553           36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSL---EKPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFF  112 (377)
Q Consensus        36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~---~~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL  112 (377)
                      +.+|+|| .++|++.+++.+....+|.++..   .+++++++||.++|+++++|++++.++|.+|.+++++ +.|+++||
T Consensus         6 s~~l~~L-~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            6 SETLQKL-VLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHH-HHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             hHHHHHH-HHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            5689999 79999999998776666776753   3678899999999999999999999999999999997 99999999


Q ss_pred             HhcCCCCchhhhhhhcccccchhhhhccchhHHHHH-HHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHH-HH
Q 047553          113 QHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEIL-KKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYL-KS  190 (377)
Q Consensus       113 ~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L-~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L-~~  190 (377)
                      +++|++.+++++++.++|++|+++++ +++|+++|| .++|++   ++++.+++.++|++++.+.+  +++++++++ ++
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~---~~~i~~ll~~~P~il~~s~e--~~~~~v~~l~~~  157 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELS---VKKTRDLVVRLPRLLTGSLE--PVKENMKVYRLE  157 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCC---HHHHHHHHHHSGGGGTSCSH--HHHHHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCC---HHHHHHHHHhCCcceeechH--HHHHHHHHHHHH
Confidence            99999999999999999999999998 599999999 589999   99999999999999999997  499999986 57


Q ss_pred             cCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHH
Q 047553          191 CGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVLQ  269 (377)
Q Consensus       191 lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~~  269 (377)
                      +|++.+++..++.++|.++++|.                                  +++++|++||. ++|++.++   
T Consensus       158 ~G~s~~ei~~~v~~~P~il~~s~----------------------------------~~l~~k~~fL~~~mg~~~~~---  200 (270)
T 3m66_A          158 LGFKHNEIQHMITRIPKMLTANK----------------------------------MKLTETFDFVHNVMSIPHHI---  200 (270)
T ss_dssp             SCCCHHHHHHHHHHCGGGGTSCH----------------------------------HHHHHHHHHHHTTSCCCHHH---
T ss_pred             cCCCHHHHHHHHHhCChhheecH----------------------------------HHHHHHHHHHHHHhCCCHHH---
Confidence            99999999999999999987664                                  46788888996 79999985   


Q ss_pred             HHHhCCcccccCHHHHHHHHHHHHH
Q 047553          270 MFRKAPLILKASEERLQLGLEFFLK  294 (377)
Q Consensus       270 ~i~~~P~iL~~s~~~L~~k~~fL~~  294 (377)
                       |.++|.+|++|.++|++|+.|+..
T Consensus       201 -i~~~P~~l~~Sleri~pR~~~l~~  224 (270)
T 3m66_A          201 -IVKFPQVFNTRLFKVKERHLFLTY  224 (270)
T ss_dssp             -HHHCGGGGGSCHHHHHHHHHHHHH
T ss_pred             -HHhCchHhhCCHHHHHHHHHHHHH
Confidence             569999999999999999999865

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=227.65  Aligned_cols=181  Identities=20%  Similarity=0.266  Sum_probs=166.5

Q ss_pred             ChHHHHHHHHhCCCChHHHHHHHHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHH
Q 047553           68 KPETVRQFLHNVGFSDTHIQLTVTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEI  147 (377)
Q Consensus        68 ~~~~~l~~L~~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~  147 (377)
                      +++.++.+|.++||++++|++++..+|.++..    ++.+++.||..+|++.++|+++|.++|.+|+++++ +|+|+++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            57788999999999999999999999999744    48899999999999999999999999999999997 79999999


Q ss_pred             HHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHH-HcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhc
Q 047553          148 LKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLK-SCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDM  226 (377)
Q Consensus       148 L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~-~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~l  226 (377)
                      |+++|++   ..++.+++.++|++|+++.+  ++..++.+|+ ++|++.+++..|+.++|.+|.++              
T Consensus       120 L~~lGl~---~~~i~~ll~~~P~lL~~s~e--~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S--------------  180 (335)
T 4fp9_B          120 LQKLGLG---EGKLKRVLYCCPEIFTMRQQ--DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED--------------  180 (335)
T ss_dssp             HHHTTCT---TTTHHHHHHHCGGGGTSCHH--HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC--------------
T ss_pred             HHHcCCC---HHHHHHHHHhCchhhccChH--HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC--------------
Confidence            9999999   99999999999999999997  4999999997 59999999999999999999766              


Q ss_pred             CCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 047553          227 GFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIEC  298 (377)
Q Consensus       227 G~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~  298 (377)
                                          .++|++|++||. +||++.++|.    + |.+|+||.++|++|+.||.. +|.
T Consensus       181 --------------------~e~L~~K~efLv~~Mgl~~~eIv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          181 --------------------LGQLEYKFQYAYFRMGIKHPDIV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             --------------------HHHHHHHHHHHHTTTCCCHHHHH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             --------------------HHHHHHHHHHHHHHhCCCHHHcc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence                                446788899998 9999999764    3 99999999999999999976 787

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.43  E-value=2e-12  Score=105.91  Aligned_cols=181  Identities=15%  Similarity=0.276  Sum_probs=139.5

Q ss_pred             chhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHH
Q 047553          141 LIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLV  220 (377)
Q Consensus       141 l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v  220 (377)
                      +...+.-+.-+|+.   .+-++-++.+.|++|...+-  .++.+-.||+.+|+.+..+.+++-.+|.+|++....+... 
T Consensus        33 lldiisefillgln---pepvcvvlkkspqllklpim--qmrkrssylqklglgegklkrvlyccpeiftmrqqdindt-  106 (239)
T 4fzv_B           33 LLDIISEFILLGLN---PEPVCVVLKKSPQLLKLPIM--QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDT-  106 (239)
T ss_dssp             TTHHHHHHHHHCCC---TTHHHHHHHSCGGGGTSCHH--HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHH-
T ss_pred             HHHHHHHHHhhcCC---CCceEEEecCCHHHhcChHH--HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHH-
Confidence            34444455556777   67777777788887777665  4777777888888888888888877888877765443332 


Q ss_pred             HHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCCC
Q 047553          221 SRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIECE  299 (377)
Q Consensus       221 ~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~~  299 (377)
                                                       +..|+ ++-|+..++.+++..+|.++.-+...++-|+.|-.-.||+.
T Consensus       107 ---------------------------------vrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgik  153 (239)
T 4fzv_B          107 ---------------------------------VRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIK  153 (239)
T ss_dssp             ---------------------------------HHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCC
T ss_pred             ---------------------------------HHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCC
Confidence                                             34444 56789999999999999999999999999999988889999


Q ss_pred             hHHHhhCCccccccccccchhhHHHHHHHHH------CCCC-CCCCCccchhccchhhHHHHhcccCCCC
Q 047553          300 KSVLVRIPICLACSIENRVIPRYRVFQIIMS------RGMF-KKDCSFPSMLLLSEGNFLQKFVLSFGDD  362 (377)
Q Consensus       300 ~~~i~~~P~~L~~Sle~ri~pR~~~l~~L~~------~g~~-~~~~~l~~~l~~s~~~F~~~~~~~~~~~  362 (377)
                      +.||++ ..+|.||+. .|+.||-+++.|.+      +|.. .+++-+.+++..|+.+|+.+-....-|+
T Consensus       154 hpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsvee  221 (239)
T 4fzv_B          154 HPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEE  221 (239)
T ss_dssp             HHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHH
T ss_pred             CcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccHHH
Confidence            999988 478999998 89999998887643      2322 1356788999999999999988776544

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.77  E-value=6.5e-08  Score=79.30  Aligned_cols=149  Identities=17%  Similarity=0.229  Sum_probs=123.6

Q ss_pred             chhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCCCCchHHHHHHHhccccccccccccchhh
Q 047553          104 TLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDDSNNEDLTRVFRRCCWNLIMDTEKSGLLR  183 (377)
Q Consensus       104 ~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~~~~~~i~~~l~~~P~lL~~~~~~~~l~~  183 (377)
                      ++...+.-|.-+|+.++-++-++.+.|.++...+- +++.+-.||+.+|+.   +..+.+++-.||.|+++..+  .+..
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglg---egklkrvlyccpeiftmrqq--dind  105 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLG---EGKLKRVLYCCPEIFTMRQQ--DIND  105 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTC---SSCCHHHHHHCGGGGTSCHH--HHHH
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCC---ccchhhheecCcHHHHHHHh--hHhH
Confidence            45666777778999999999999999999999885 899999999999998   88999999999999999886  4999


Q ss_pred             hHHHHHH-cCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhCCHHHHHHHHHHHH-HcC
Q 047553          184 NIEYLKS-CGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLLDMGFSTNSRMFVYGLVVLSCLNEETFGRKLELFR-SYG  261 (377)
Q Consensus       184 ~v~~L~~-lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~~lG~~~~~~~~~~~p~~l~~~s~~~l~~k~~~L~-~lG  261 (377)
                      .+..|++ |-++..++.+++..+|.++.-+..                                  .++-|+.|-- ++|
T Consensus       106 tvrllkekclftvqqvtkilhscpsvlredlg----------------------------------qleykfqyayfrmg  151 (239)
T 4fzv_B          106 TVRLLKEKCLFTVQQVTKILHSCPSVLREDLG----------------------------------QLEYKFQYAYFRMG  151 (239)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHCGGGGTSCTT----------------------------------HHHHHHHHHHHTSC
T ss_pred             HHHHHHHhHHhhHHHHHHHHHhCcHHHHHHHh----------------------------------hhhhhHhHHHHHcc
Confidence            9999987 999999999999999988755433                                  3444455443 688


Q ss_pred             CCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhhCC
Q 047553          262 FSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEIEC  298 (377)
Q Consensus       262 ~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~g~  298 (377)
                      +..-++.+     ...+.||..+++.+.-||.+ +|.
T Consensus       152 ikhpdivk-----seylqysltkikqrhiyler-lgr  182 (239)
T 4fzv_B          152 IKHPDIVK-----SEYLQYSLTKIKQRHIYLER-LGR  182 (239)
T ss_dssp             CCHHHHHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred             CCCcchhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence            88776542     46788999999999999865 665

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=90.32  E-value=1.1  Score=42.59  Aligned_cols=14  Identities=29%  Similarity=0.717  Sum_probs=8.2

Q ss_pred             hhhhhhhcccccch
Q 047553          121 DLGKFISKNPSLFA  134 (377)
Q Consensus       121 ~l~~ii~~~P~lL~  134 (377)
                      +++.+|..+|.+|-
T Consensus       248 ~lR~~vq~nP~~l~  261 (368)
T 1oqy_A          248 NMRQVIQQNPALLP  261 (368)
T ss_dssp             HHHHSTTTCTTHHH
T ss_pred             HHHHHHHhChHHHH
Confidence            45666666666543

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=89.74  E-value=1.7  Score=34.39  Aligned_cols=99  Identities=10%  Similarity=0.076  Sum_probs=67.3

Q ss_pred             chhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHH------hCCCChHHHHHHHHhCCCeeccCCCCchhhHH
Q 047553           36 FIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLH------NVGFSDTHIQLTVTSRPTILFSDVDKTLKPKI  109 (377)
Q Consensus        36 ~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~------~lG~~~~~i~~ii~~~P~lL~~~~~~~l~~~i  109 (377)
                      ...|..| -+.||+...+.+++.+.    . .+++..++||.      +.|+++.++...+..+..--...  ..-...+
T Consensus         9 ~~~v~~l-~~MGFp~~~~~kAl~~~----g-~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~--~~~~~~v   80 (118)
T 4ae4_A            9 RQCVETV-VNMGYSYECVLRAMKAA----G-ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKM--MEFLQLM   80 (118)
T ss_dssp             HHHHHHH-HHTTCCHHHHHHHHHHH----C-SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHH--HHHHHHH
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHH----C-cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCcccc--ccCHHHH
Confidence            4457788 67999999999998776    3 27888888885      45888888887776542110000  0112457


Q ss_pred             HHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHH
Q 047553          110 EFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKK  150 (377)
Q Consensus       110 ~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~  150 (377)
                      .-|.++|++.+.+.+.+..+-        +++...++||..
T Consensus        81 ~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~  113 (118)
T 4ae4_A           81 SKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMA  113 (118)
T ss_dssp             HHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence            778888998888888775543        466677777755

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=86.23  E-value=1.4  Score=29.68  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             hccCCCCCCChHHHHHHHHhCCCChHHHHHHHHh
Q 047553           59 KFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTS   92 (377)
Q Consensus        59 ~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~   92 (377)
                      ..|.+.+ .-+..+++||++.|++.++|...+.+
T Consensus        21 ~dp~V~~-sp~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           21 QNSRVRQ-SPLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HCTTGGG-SCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CChhhhc-CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3455544 34666777777777777777776654

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=86.09  E-value=0.45  Score=45.39  Aligned_cols=152  Identities=14%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CchhHHHhHhhCCCChhhHHHHHhhccCCCCCCChHHHHHHHHhCCCChH------------------------HHHHHH
Q 047553           35 NFIFLNFLIKTLNIPKSRALPISNKFSRIKSLEKPETVRQFLHNVGFSDT------------------------HIQLTV   90 (377)
Q Consensus        35 ~~~~v~~L~~~~Gls~~~~~~i~~~~P~ll~~~~~~~~l~~L~~lG~~~~------------------------~i~~ii   90 (377)
                      +..+|.-| .++||+.+++.++++..     ..+++..++||.+ |+...                        +--..+
T Consensus       168 ~~~~i~~l-~~MGf~~~~~~~AL~a~-----~nn~~~A~e~L~~-gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  240 (368)
T 1oqy_A          168 YETMLTEI-MSMGYERERVVAALRAS-----YNNPHRAVEYLLT-GIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFL  240 (368)
T ss_dssp             HHHHHHHH-HTTTCCSHHHHHHHHHS-----CSSTTHHHHTTTT-SSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHH
T ss_pred             hHHHHHHH-HHcCCCHHHHHHHHHHc-----CCCHHHHHHHHHh-CCCcccccccCCccccccccccCccccccchHHHH
Confidence            44568888 68999999999988755     2478888888853 34432                        001222


Q ss_pred             HhCCCe------eccCCCCchhhHHHHHHhcCCCCchhhhhhhcccccchhhhhccchhHHHHHHHHhcCC-CCchHHHH
Q 047553           91 TSRPTI------LFSDVDKTLKPKIEFFQHLGLVGSDLGKFISKNPSLFAASLERKLIPCVEILKKILVDD-SNNEDLTR  163 (377)
Q Consensus        91 ~~~P~l------L~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~~P~lL~~s~~~~l~p~v~~L~~~g~~~-~~~~~i~~  163 (377)
                      +.+|++      +..+++ -|.   .+|+.+|-+..++.++|..||.-|..-+..-+..-     .-|... .....+..
T Consensus       241 r~~pqf~~lR~~vq~nP~-~l~---~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~-----~~~~~~~~~~~~~~~  311 (368)
T 1oqy_A          241 RDQPQFQNMRQVIQQNPA-LLP---ALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGEL-----ADISDVEGEVGAIGE  311 (368)
T ss_dssp             HHSHHHHHHHHSTTTCTT-HHH---HHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCS-----CSSCCCSSSSCCCSC
T ss_pred             hcChHHHHHHHHHHhChH-HHH---HHHHHHHhhCHHHHHHHHHCHHHHHHHHcCccccc-----ccccccccccccccc
Confidence            223321      112221 011   34556787888888888888875443332111000     000000 00000000


Q ss_pred             HHHhccccccccccccchhhhHHHHHHcCCCchhHhhhhhhCC
Q 047553          164 VFRRCCWNLIMDTEKSGLLRNIEYLKSCGIVGSQLSMLLVWQP  206 (377)
Q Consensus       164 ~l~~~P~lL~~~~~~~~l~~~v~~L~~lG~~~~~i~~ll~~~P  206 (377)
                      . .-.+..+....+   =+..|+-|.++||+...+.+.+..+-
T Consensus       312 ~-~~~~~~i~~t~e---e~eaI~rL~~mGF~~~~a~~al~a~~  350 (368)
T 1oqy_A          312 E-APQMNYIQVTPQ---EKEAIERLKALGFPESLVIQAYFACE  350 (368)
T ss_dssp             C-CTTCSSCCCCTT---THHHHHHHHHHTCCSHHHHHHTSSSS
T ss_pred             c-CCccccccCCCc---CHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence            0 001223344444   36788999999999999988887665

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=85.77  E-value=0.81  Score=30.78  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=26.4

Q ss_pred             HHhCCCeeccCCCCchhhHHHHHHhcCCCCchhhhhhhc
Q 047553           90 VTSRPTILFSDVDKTLKPKIEFFQHLGLVGSDLGKFISK  128 (377)
Q Consensus        90 i~~~P~lL~~~~~~~l~~~i~fL~~lG~s~~~l~~ii~~  128 (377)
                      +..+|.+-...    +..+++||++-|++.++|..++.+
T Consensus        19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence            44677775544    667889999999998888877765

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=84.62  E-value=1.8  Score=34.14  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             hhhHHHHHHcCCCchhHhhhhhhCCeeeEeehhhHHHHHHHHH------hcCCCCchhhHHHHHHHHHhCCHH---HHHH
Q 047553          182 LRNIEYLKSCGIVGSQLSMLLVWQPRLFCYKELKIRHLVSRLL------DMGFSTNSRMFVYGLVVLSCLNEE---TFGR  252 (377)
Q Consensus       182 ~~~v~~L~~lG~~~~~i~~ll~~~P~il~~s~~~l~~~v~~l~------~lG~~~~~~~~~~~p~~l~~~s~~---~l~~  252 (377)
                      +..+.-|.++||+...+.+.+...-    .   ..+..++||.      +.|++...+.  .++. +...+..   .-.+
T Consensus         9 ~~~v~~l~~MGFp~~~~~kAl~~~g----~---~~e~amewL~~h~~L~d~~~d~~~~e--~~l~-~~~~~~~~~~~~~~   78 (118)
T 4ae4_A            9 RQCVETVVNMGYSYECVLRAMKAAG----A---NIEQILDYLFAHGQLCEKGFDPLLVE--EALE-MHQCSEEKMMEFLQ   78 (118)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHC----S---CHHHHHHHHHHHHHHHHTTCCHHHHH--HHHH-HCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHC----c---CHHHHHHHHHHhchhcccCCChhhhH--HHHH-hccCCccccccCHH
Confidence            4567778889999998888876541    1   3445555553      4566554321  0010 1111111   1235


Q ss_pred             HHHHHHHcCCCHHHHHHHHHhCCcccccCHHHHHHHHHHHHHhh
Q 047553          253 KLELFRSYGFSKEEVLQMFRKAPLILKASEERLQLGLEFFLKEI  296 (377)
Q Consensus       253 k~~~L~~lG~s~~~v~~~i~~~P~iL~~s~~~L~~k~~fL~~~~  296 (377)
                      .+.-|.+|||+.+++.+.++.+-       ..+..-+++|....
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~-------nd~erAlewL~~~~  115 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHN-------NDQDNALEDLMARA  115 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTT-------TCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHhc
Confidence            67788899999999998887743       24555566666543

>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A

Probab=80.53  E-value=3.3  Score=29.25  Aligned_cols=34  Identities=26%  Similarity=0.470  Sum_probs=24.7

Q ss_pred             hccCCCCCCChHHHHHHHHhCCCChHHHHHHHHhC
Q 047553           59 KFSRIKSLEKPETVRQFLHNVGFSDTHIQLTVTSR   93 (377)
Q Consensus        59 ~~P~ll~~~~~~~~l~~L~~lG~~~~~i~~ii~~~   93 (377)
                      ..|.+.. .-++.+++||++.|++.++|...+.+.
T Consensus        26 qdp~V~~-sp~~~K~~FL~sKGLt~eEI~~Al~ra   59 (70)
T 2w84_A           26 QNSRVRQ-SPLATRRAFLKKKGLTDEEIDMAFQQS   59 (70)
T ss_dssp             CSTTGGG-SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CChhhhh-CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            3455544 356778888888888888888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00