Citrus Sinensis ID: 047563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Secondary Structure (PSIPRED)
ccccccEEEEEEEEcccEEEEcccccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccHHHccccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHcccHHHccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mltypqqvKVEFVTKNRyelyngsnlnymVGLDLScnqltgnvpseigdlqKIRVLNLShnclsgsiprsfsnlKMIESLdlsnnrlsgqipAQLIELNFLSNFNVSynnlsglipdkgqystfdetsyrgnlylscptinkscnsaeekpaikskgrededdsaiDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Flexible Loop (DISEMBL)
mltypqqvkVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPtinkscnsaeekpaikskgrededdsAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Low Complexity Region (SEG)
MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Disordered region (IsUnstruct)
******QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTIN************************IDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVL**
Disordered Region (DISOPRED)
MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI**************************DMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLN*
Disordered Region (DISEMBL)
MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNS****************DSAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Disordered Region (DISPRO)
MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSA*E************DDSAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLYKYVLNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.644	0.141	0.418	9e-24
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.558	0.121	0.468	6e-23
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.630	0.192	0.405	2e-22
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.819	0.156	0.342	1e-21
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.545	0.110	0.450	3e-21
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.657	0.127	0.382	2e-20
Q9LJF3	1164	Receptor-like protein kin	no	no	0.770	0.146	0.380	2e-19
C0LGE4	882	Probable LRR receptor-lik	no	no	0.590	0.148	0.413	4e-19
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.5	0.107	0.455	5e-19
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.563	0.113	0.437	6e-19

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  110 bits (274), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 5/148 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           ++L  N L+G +  E G+L+K+ V +L  N LSGSIP S S +  +E+LDLSNNRLSG I
Sbjct: 528 IELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSI 587

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKP 151
           P  L +L+FLS F+V+YNNLSG+IP  GQ+ TF  +S+  N    C      C+   E  
Sbjct: 588 PVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNHL--CGEHRFPCSEGTESA 645

Query: 152 AIKSKGREDEDDSAIDMVSLYWSFGASY 179
            IK   R    D  +   ++  +FG+ +
Sbjct: 646 LIKRSRRSRGGDIGM---AIGIAFGSVF 670

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 4/128 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +DLS N L G++  E GDL+++ VLNL +N LSG+IP + S +  +E LDLS+N LSG I
Sbjct: 538 IDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNI 597

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKP 151
           P  L++L+FLS F+V+YN LSG IP   Q+ TF  +S+ GN  L C      C+  ++ P
Sbjct: 598 PPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGL-CGEHASPCHITDQSP 656

Query: 152 ---AIKSK 156
              A+KSK
Sbjct: 657 HGSAVKSK 664

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 91/148 (61%), Gaps = 8/148 (5%)

Query: 37  NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLI 96
           N LTG++P E+G L+ + +L L  N LSGSIP   SNL  +E LDLSNN LSG IP  L 
Sbjct: 586 NNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLT 645

Query: 97  ELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSK 156
            LNFLS FNV+ N+L G IP +GQ+ TF + ++ GN  L    +  SC     KP   ++
Sbjct: 646 NLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSC-----KP---TR 697

Query: 157 GREDEDDSAIDMVSLYWSFGASYVTVIL 184
            +E+++ +   ++ +   +  S+V++++
Sbjct: 698 AKENDELNRTFLMGIAIGYFLSFVSILV 725

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 2/184 (1%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
           +Y  S    M+  D+S N ++G +P   G++  ++VLNL HN ++G+IP SF  LK I  
Sbjct: 632 MYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGV 691

Query: 80  LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT 139
           LDLS+N L G +P  L  L+FLS+ +VS NNL+G IP  GQ +TF  + Y  N  L C  
Sbjct: 692 LDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGL-CGV 750

Query: 140 INKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGLLAILWINSFWRKR 199
             + C SA  +P       + +  +   +  + +SF   +V +++ L  +  +    +KR
Sbjct: 751 PLRPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSF-MCFVMLVMALYRVRKVQKKEQKR 809

Query: 200 WFYF 203
             Y 
Sbjct: 810 EKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 72/122 (59%)

Query: 37  NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLI 96
           N LTG +P E+G L+ + +L L  N  SGSIP   SNL  +E LDLSNN LSG+IP  L 
Sbjct: 591 NNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLT 650

Query: 97  ELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSK 156
            L+FLS FNV+ N LSG IP   Q+ TF + ++ GN  L    +  SC+  +       K
Sbjct: 651 GLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCDPTQHSTTKMGK 710

Query: 157 GR 158
           G+
Sbjct: 711 GK 712

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 11/157 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS NQL G +P EIG++  ++VL LSHN LSG IP +   LK +   D S+NRL GQI
Sbjct: 616 LDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQI 675

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKP 151
           P     L+FL   ++S N L+G IP +GQ ST   T Y  N  L    + +  N   + P
Sbjct: 676 PESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPGLCGVPLPECKNGNNQLP 735

Query: 152 AIKSKGREDEDDSAIDMVSLYWSFGASYV-TVILGLL 187
           A   +G+  +          + +  AS+  +++LG+L
Sbjct: 736 AGTEEGKRAK----------HGTRAASWANSIVLGVL 762

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 5/176 (2%)

Query: 29  MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           M+ LDLS N ++G++P   G +  ++VLNL HN L+G+IP SF  LK I  LDLS+N L 
Sbjct: 641 MIYLDLSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQ 700

Query: 89  GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAE 148
           G +P  L  L+FLS+ +VS NNL+G IP  GQ +TF  T Y  N  L C      C+S  
Sbjct: 701 GFLPGSLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGL-CGVPLPPCSSG- 758

Query: 149 EKPAIKSKGREDEDDSAIDM-VSLYWSFGASYVTVILGLLAILWINSFWRKRWFYF 203
            +P  +S     +   A  M   + +SF    V +I+ L     +    ++R  Y 
Sbjct: 759 SRPT-RSHAHPKKQSIATGMSAGIVFSF-MCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 2/133 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           SN   ++ LD+S N L G +  ++ +L  I++L+L  N L+GSIP    NL  ++ LDLS
Sbjct: 377 SNCRVLLELDVSGNDLEGKISKKLLNLTNIKILDLHRNRLNGSIPPELGNLSKVQFLDLS 436

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKS 143
            N LSG IP+ L  LN L++FNVSYNNLSG+IP       F  +++  N +L    +   
Sbjct: 437 QNSLSGPIPSSLGSLNTLTHFNVSYNNLSGVIPPVPMIQAFGSSAFSNNPFLCGDPLVTP 496

Query: 144 CNSAEEKPAIKSK 156
           CNS     A KS+
Sbjct: 497 CNS--RGAAAKSR 507

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 34  LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
           L+ N+L G +  EIG L+++ +L+LS N  +G+IP S S L  +E LDLS N L G IP 
Sbjct: 543 LNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPL 602

Query: 94  QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCN 145
               L FLS F+V+YN L+G IP  GQ+ +F  +S+ GNL L C  I+  C+
Sbjct: 603 SFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGL-CRAIDSPCD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 3/128 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S ++ +  L L  N+  G +P EIG L  +  LNL+ N  SG IP+   NLK +++LDLS
Sbjct: 591 SQMDRLSTLHLGFNEFEGKLPPEIGQL-PLAFLNLTRNNFSGEIPQEIGNLKCLQNLDLS 649

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNN-LSGLIPDKGQYSTFDETSYRGNLYLSCPT-IN 141
            N  SG  P  L +LN LS FN+SYN  +SG IP  GQ +TFD+ S+ GN  L  P+  N
Sbjct: 650 FNNFSGNFPTSLNDLNELSKFNISYNPFISGAIPTTGQVATFDKDSFLGNPLLRFPSFFN 709

Query: 142 KSCNSAEE 149
           +S N+  +
Sbjct: 710 QSGNNTRK 717

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
359482735	1097	PREDICTED: receptor-like protein 12-like	0.963	0.195	0.532	2e-58
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.963	0.200	0.523	2e-57
359482757	1027	PREDICTED: LRR receptor-like serine/thre	0.959	0.207	0.525	5e-57
297743502	893	unnamed protein product [Vitis vinifera]	0.968	0.240	0.525	5e-57
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.963	0.208	0.513	7e-57
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.963	0.187	0.523	2e-56
357468861	1016	Receptor-like protein kinase [Medicago t	0.909	0.198	0.541	2e-56
358345693	1011	Receptor-like protein kinase [Medicago t	0.909	0.199	0.541	3e-56
297743521	518	unnamed protein product [Vitis vinifera]	0.932	0.399	0.526	7e-55
224115344	552	predicted protein [Populus trichocarpa]	0.923	0.371	0.536	1e-54

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 150/216 (69%), Gaps = 2/216 (0%)

Query: 3    TYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC 62
            TY ++ +VEFVTKNR++ Y G  L +M GLDLSCN LTG +P E+G L  IR LNLSHN 
Sbjct: 870  TYNEKDEVEFVTKNRHDFYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQ 929

Query: 63   LSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQY 121
            L+GSIP+SFSNL  IESLDLS N+L G+IP +L+ELNFL  F+V+YNN SG +PD K Q+
Sbjct: 930  LNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQF 989

Query: 122  STFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGASYV 180
             TFDE SY GN +L    + + CN++ E P   S+  E E     I+ V  + SF  SY+
Sbjct: 990  GTFDERSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYI 1049

Query: 181  TVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLY 216
             ++LG + IL+IN +WR RWF FI+ CI  CYY ++
Sbjct: 1050 MILLGFVIILYINPYWRHRWFNFIEECIYSCYYFVF 1085

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 150/216 (69%), Gaps = 2/216 (0%)

Query: 3    TYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC 62
             Y ++ +VEFVTKNR++ Y+G  LN+M GLDLSCN LTG +P ++G L  I  LNLSHN 
Sbjct: 840  VYDEKNEVEFVTKNRHDSYSGDILNFMFGLDLSCNNLTGEIPHKLGKLSWIHALNLSHNQ 899

Query: 63   LSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQY 121
            L  SIP+SFSNL  IESLDLS N+LSG+IP +L+ELNFL  F+V+YNN+SG +PD K Q+
Sbjct: 900  LKDSIPKSFSNLSQIESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQF 959

Query: 122  STFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGASYV 180
             TFDE SY GN +L    + + CN++ E P   S+  E E     I+ V  + SF  SY+
Sbjct: 960  GTFDERSYEGNPFLCGTLLKRKCNTSIEPPCAPSQSFESEAKWYDINHVVFFASFTTSYI 1019

Query: 181  TVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLY 216
             ++LG + IL+IN +WR RWF FI+ CI  CYY ++
Sbjct: 1020 MILLGFVTILYINPYWRHRWFNFIEECIYSCYYFVF 1055

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482757|ref|XP_002268914.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 150/215 (69%), Gaps = 2/215 (0%)

Query: 1    MLTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSH 60
            +L Y ++ +V+FVTKNR + Y G  L +M GLDLSCN LTG +P E+G L  IR LNLSH
Sbjct: 798  ILVYNEKDEVDFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSH 857

Query: 61   NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KG 119
            N L+GSIP+SFSNL  IESLDLS N+L G+IP +L+ELNFL  F+V+YNN+SG +PD K 
Sbjct: 858  NQLNGSIPKSFSNLSQIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNISGRVPDTKA 917

Query: 120  QYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGAS 178
            Q++TFDE++Y GN +L    + + CN++ E P   S+  E E     I+ V  + SF  S
Sbjct: 918  QFATFDESNYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTS 977

Query: 179  YVTVILGLLAILWINSFWRKRWFYFIDACIDLCYY 213
            Y+ ++LG   IL+IN +WR RWF FI+ CI  CYY
Sbjct: 978  YIIILLGFATILYINPYWRHRWFNFIEECIYSCYY 1012

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743502|emb|CBI36369.3| unnamed protein product [Vitis vinifera]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/217 (52%), Positives = 148/217 (68%), Gaps = 2/217 (0%)

Query: 2   LTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN 61
           L Y ++ +VEFVTKNR + Y G  L +M GLDLSCN LTG +P E+G L  I  LNLSHN
Sbjct: 527 LVYNEKDEVEFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSWIHALNLSHN 586

Query: 62  CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQ 120
            L+GSIP+ FSNL  IESLDLS N+LSG+IP +L+ELNFL  F+V+YNN SG +PD K Q
Sbjct: 587 QLNGSIPKGFSNLSQIESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQ 646

Query: 121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGASY 179
           + TFDE SY GN +L    + + CN++ E P   S+  E E     I+ V  + SF  SY
Sbjct: 647 FGTFDERSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSY 706

Query: 180 VTVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLY 216
           + ++LG + IL+IN +WR RWF FI+ CI  CYY ++
Sbjct: 707 IMILLGFVTILYINPYWRHRWFNFIEECIYSCYYFVF 743

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 151/216 (69%), Gaps = 2/216 (0%)

Query: 3    TYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC 62
             Y  + +VEFVTKNR + Y G  L +M GLDLSCN LTG +P E+G L  IR LNLSHN 
Sbjct: 799  VYKGKDEVEFVTKNRRDFYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQ 858

Query: 63   LSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQY 121
            L+GSIP+SFS+L  IESLDLS N+L G+IP +L+ELNFL+ F+V+YNN+SG +P+ K Q+
Sbjct: 859  LNGSIPKSFSDLSQIESLDLSYNKLGGEIPLELVELNFLAVFSVAYNNISGRVPNAKAQF 918

Query: 122  STFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGASYV 180
            +TFDE+SY GN +L    + + CN++ E P   S+  E E     I+ V  + SF  SY+
Sbjct: 919  ATFDESSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESETKWYDINHVVFFASFTTSYI 978

Query: 181  TVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLY 216
             ++LG + IL+IN +WR RWF FI+ C+  CYY ++
Sbjct: 979  MILLGFVTILYINPYWRHRWFNFIEECVYSCYYFVF 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 147/216 (68%), Gaps = 2/216 (0%)

Query: 3    TYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC 62
             Y ++ +VEFVTKNR + Y G  L +M GLDLSCN LTG +P E+G L  I  LNLSHN 
Sbjct: 917  VYNEKDEVEFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSWIHALNLSHNQ 976

Query: 63   LSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQY 121
            L+GSIP+ FSNL  IESLDLS N+LSG+IP +L+ELNFL  F+V+YNN SG +PD K Q+
Sbjct: 977  LNGSIPKGFSNLSQIESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQF 1036

Query: 122  STFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGASYV 180
             TFDE SY GN +L    + + CN++ E P   S+  E E     I+ V  + SF  SY+
Sbjct: 1037 GTFDERSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYI 1096

Query: 181  TVILGLLAILWINSFWRKRWFYFIDACIDLCYYCLY 216
             ++LG + IL+IN +WR RWF FI+ CI  CYY ++
Sbjct: 1097 MILLGFVTILYINPYWRHRWFNFIEECIYSCYYFVF 1132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 143/203 (70%), Gaps = 1/203 (0%)

Query: 7   QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS 66
            ++VEF TK+    Y G  L  M GLDLSCN+LTG +PS+IGDLQ+IR LNLSHN LSG 
Sbjct: 765 HLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGP 824

Query: 67  IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 126
           IP +FSNL  IESLDLS N LSG+IP +L +LNFLS FNVSYNNLSG  P  GQ++ FDE
Sbjct: 825 IPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDE 884

Query: 127 TSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGL 186
            +YRGN  L  P +++ C   E  P+ +S   E E+++ +DM++ YWSF ASY+T++L  
Sbjct: 885 DNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNE-EEETGVDMITFYWSFTASYITILLAF 943

Query: 187 LAILWINSFWRKRWFYFIDACID 209
           + +L IN  WR  WFY+I   ++
Sbjct: 944 ITVLCINPRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 143/203 (70%), Gaps = 1/203 (0%)

Query: 7   QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS 66
            ++VEF TK+    Y G  L  M GLDLSCN+LTG +PS+IGDLQ+IR LNLSHN LSG 
Sbjct: 765 HLEVEFRTKHYEYFYKGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGP 824

Query: 67  IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 126
           IP +FSNL  IESLDLS N LSG+IP +L +LNFLS FNVSYNNLSG  P  GQ++ FDE
Sbjct: 825 IPITFSNLTQIESLDLSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDE 884

Query: 127 TSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGL 186
            +YRGN  L  P +++ C   E  P+ +S   E E+++ +DM++ YWSF ASY+T++L  
Sbjct: 885 DNYRGNPSLCGPLLSRKCERVEPPPSSQSNDNE-EEETGVDMITFYWSFTASYITILLAF 943

Query: 187 LAILWINSFWRKRWFYFIDACID 209
           + +L IN  WR  WFY+I   ++
Sbjct: 944 ITVLCINPRWRMAWFYYISKFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743521|emb|CBI36388.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 145/209 (69%), Gaps = 2/209 (0%)

Query: 10  VEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR 69
           +EFVTKNR + Y G  L +M GLDLSCN LT  +P E+G L  IR LNLSHN L+GSIP+
Sbjct: 298 IEFVTKNRRDSYKGGILEFMSGLDLSCNNLTSEIPHELGMLSWIRALNLSHNQLNGSIPK 357

Query: 70  SFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDETS 128
           SFSNL  IESLDLS N+L G+IP +L+ELNFL+ F+V+YNN+SG +PD K Q++TFDE+S
Sbjct: 358 SFSNLSQIESLDLSYNKLGGEIPLELVELNFLAVFSVAYNNISGRVPDAKAQFATFDESS 417

Query: 129 YRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSFGASYVTVILGLL 187
           Y GN +L    + + CN+  E     S+  E E     I+ V  + SF  SY+ ++LG +
Sbjct: 418 YEGNPFLCGELLKRKCNTCIESSCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFV 477

Query: 188 AILWINSFWRKRWFYFIDACIDLCYYCLY 216
            IL+IN +WR RWF FI+ CI  CYY ++
Sbjct: 478 TILYINPYWRHRWFNFIEECIYSCYYFVF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115344|ref|XP_002332173.1| predicted protein [Populus trichocarpa] gi|222832421|gb|EEE70898.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 142/207 (68%), Gaps = 2/207 (0%)

Query: 7   QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS 66
           ++ VE   K  +  Y G  L YM  +DLSCN+ TG +P+E G+L  I  LNLS N L+G 
Sbjct: 332 KIVVELTAKKNFYTYEGDILRYMSAVDLSCNRFTGEIPTEWGNLSGIFALNLSQNNLTGL 391

Query: 67  IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFD 125
           IP SFSNLK IESLDLS+N L+G+IPAQL+ELNFL+ FNVSYNNLSG  P+ K Q++TFD
Sbjct: 392 IPSSFSNLKYIESLDLSHNNLNGRIPAQLVELNFLAVFNVSYNNLSGRTPEMKYQFATFD 451

Query: 126 ETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILG 185
           E+SY+GN  L  P +  SC+  +  P+ +     + DD  IDM S Y SFG  Y+ V+L 
Sbjct: 452 ESSYKGNPLLCGPPLQNSCDKTKS-PSARLPNDSNGDDGLIDMDSFYASFGVFYIIVVLT 510

Query: 186 LLAILWINSFWRKRWFYFIDACIDLCY 212
           + A+L IN  WR+RWFYFI+ CID CY
Sbjct: 511 IAALLCINPHWRRRWFYFIEECIDTCY 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.891	0.182	0.536	2.1e-50
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.882	0.219	0.548	4.3e-50
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.896	0.206	0.524	1.6e-48
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.900	0.204	0.490	2.7e-48
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.896	0.199	0.514	6.2e-48
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.909	0.222	0.490	1.5e-47
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.918	0.218	0.464	8e-44
TAIR|locus:2051628	1008	PSKR1 "phytosulfokin receptor	0.689	0.151	0.424	2.2e-25
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.765	0.192	0.405	3.3e-24
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.788	0.196	0.387	7e-24

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 2.1e-50, P = 2.1e-50
 Identities = 110/205 (53%), Positives = 139/205 (67%)

Query:    10 VEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR 69
             V+F+TK+RYE Y G  L YM GLDLS N+L+G +P EIGDLQ IR LNLS N L+GSIP 
Sbjct:   867 VDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPD 926

Query:    70 SFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSY 129
             S S LK +ESLDLSNN+L G IP  L +LN L   N+SYNNLSG IP KG   TFDE SY
Sbjct:   927 SISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSY 986

Query:   130 RGNLYL-SCPTINKSCNSAE--EKPAIKSKGREDEDD---SAIDMVSLYWSFGASYVTVI 183
              GN +L   PT NK+C S    E P++ +  +E+E++   + IDMV  YW+  A Y++  
Sbjct:   987 IGNAHLCGLPT-NKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTS 1045

Query:   184 LGLLAILWINSFWRKRWFYFIDACI 208
             L L A L+I+S W + WFY +D C+
Sbjct:  1046 LALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 4.3e-50, P = 4.3e-50
 Identities = 113/206 (54%), Positives = 141/206 (68%)

Query:     8 VKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSI 67
             V+VEF  K RY+LY    LN M GLDLS N+L+GN+P E+GDL+++R LNLS N LSGSI
Sbjct:   683 VQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSI 742

Query:    68 PRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDET 127
             P SFSNL+ IESLDLS N+L G IP+QL  L  L  FNVSYNNLSG+IP   Q++TF E 
Sbjct:   743 PGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEK 802

Query:   128 SYRGNLYLSC--PTINKSCNSAEEKPAIKS-KGREDEDDSAI-DMVSLYWSFGASYVTVI 183
             SY GN +L C  PT  +SC        I S K  ED+D+S + D+V L+WS G +YVTV+
Sbjct:   803 SYLGN-FLLCGSPT-KRSCGGT----TISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVM 856

Query:   184 LGLLAILWINSFWRKRWFYFIDACID 209
             +G L  L  +S WR+ WF  +D  ID
Sbjct:   857 MGFLVFLCFDSPWRRAWFCLVDTFID 882

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 1.6e-48, P = 1.6e-48
 Identities = 106/202 (52%), Positives = 139/202 (68%)

Query:     7 QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS 66
             Q K+EF TK+RY+ Y G NL  + G+DLS N+L+G +P E G L ++R LNLSHN LSG 
Sbjct:   759 QTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGV 818

Query:    67 IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 126
             IP+S S+++ +ES DLS NRL G+IP+QL EL  LS F VS+NNLSG+IP   Q++TFD 
Sbjct:   819 IPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDA 878

Query:   127 TSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGL 186
              SY GN  L     N+SCN+   + A    G E  D+S IDMVS Y SF A+YVT+++G+
Sbjct:   879 ESYFGNRLLCGQPTNRSCNNNSYEEA--DNGVE-ADESIIDMVSFYLSFAAAYVTILIGI 935

Query:   187 LAILWINSFWRKRWFYFIDACI 208
             LA L  +S W + WFY +DA I
Sbjct:   936 LASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 2.7e-48, P = 2.7e-48
 Identities = 101/206 (49%), Positives = 139/206 (67%)

Query:     8 VKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSI 67
             V++EF  K RY+ ++G  L+YM GLDLS N+L+G +P+E+GDL K+R LNLS N LS SI
Sbjct:   764 VEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSI 823

Query:    68 PRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDET 127
             P +FS LK IESLDLS N L G IP QL  L  L+ FNVS+NNLSG+IP  GQ++TF++ 
Sbjct:   824 PANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDN 883

Query:   128 SYRGN-LYLSCPTINKSCNSAEEKPAIKSKGRE----DEDDSAIDMVSLYWSFGASYVTV 182
             SY GN L    PT ++SC   +      + G E    D+D++AIDMV LYW+ G++Y   
Sbjct:   884 SYLGNPLLCGTPT-DRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIA 942

Query:   183 ILGLLAILWINSFWRKRWFYFIDACI 208
             ++G+L ++  +  WR+ W   +DA I
Sbjct:   943 LIGILVLMCFDCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.2e-48, P = 6.2e-48
 Identities = 104/202 (51%), Positives = 136/202 (67%)

Query:     7 QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS 66
             Q K+EF TK+RY+ Y G NL  + G+DLS N+L+G +P E+G L ++  LNLSHN LSG 
Sbjct:   759 QTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGV 818

Query:    67 IPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 126
             I  SFS LK +ESLDLS NRL G IP QL ++  L+ FNVSYNNLSG++P   Q++TF+ 
Sbjct:   819 ILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFET 878

Query:   127 TSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGL 186
              SY GN  L   +I+ SC S    P     G E  D+S +DM S YWSF A+YVT++LG+
Sbjct:   879 QSYFGNPLLCGKSIDISCASNNFHPT--DNGVE-ADESTVDMESFYWSFVAAYVTILLGI 935

Query:   187 LAILWINSFWRKRWFYFIDACI 208
             LA L  +S W + WFY +DA +
Sbjct:   936 LASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 1.5e-47, P = 1.5e-47
 Identities = 102/208 (49%), Positives = 135/208 (64%)

Query:     7 QVKVEFVTKNRYELYNGS------NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSH 60
             ++ V+F TK RY+ Y G+       LN M GLDLS N+L+G +P+E+GDL K+R LNLSH
Sbjct:   693 EIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSH 752

Query:    61 NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 120
             N LS  IP SFS L+ IESLDLS N L G IP QL  L  L+ FNVSYNNLSG+IP   Q
Sbjct:   753 NFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQ 812

Query:   121 YSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGASYV 180
             ++TFDE SY GN  L  P  + SC + +      + G ED+ + AIDM+  YWS   +YV
Sbjct:   813 FNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYV 872

Query:   181 TVILGLLAILWINSFWRKRWFYFIDACI 208
             T ++G+L ++ ++  WR+ W   +DA I
Sbjct:   873 TALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 8.0e-44, P = 8.0e-44
 Identities = 99/213 (46%), Positives = 139/213 (65%)

Query:     3 TYPQQVKVEFVTKNRYELYNGSN------LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVL 56
             TY Q+ +++F  K RY+ Y+G +      L  M G+DLS N+L+G +P+E+GDL K+R L
Sbjct:   717 TY-QETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTL 775

Query:    57 NLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
             NLSHN L GSIP SFS L  +ESLDLS+N L G IP  L  L  L+ F+VS NNLSG+IP
Sbjct:   776 NLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIP 835

Query:   117 DKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKPAIKSKGREDEDD-SAIDMVSLYWSF 175
                Q++TF+E SY GN  L  P  ++SC +  + P     G+E+EDD +AIDM+  Y+S 
Sbjct:   836 QGRQFNTFEEESYLGNPLLCGPPTSRSCET-NKSPEEADNGQEEEDDKAAIDMMVFYFST 894

Query:   176 GASYVTVILGLLAILWINSFWRKRWFYFIDACI 208
              + YVT ++G+L ++  +  WR+ W   +DA I
Sbjct:   895 ASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2051628 PSKR1 "phytosulfokin receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 67/158 (42%), Positives = 97/158 (61%)

Query:    32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
             ++L  N L+G +  E G+L+K+ V +L  N LSGSIP S S +  +E+LDLSNNRLSG I
Sbjct:   528 IELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGSIPSSLSGMTSLEALDLSNNRLSGSI 587

Query:    92 PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKP 151
             P  L +L+FLS F+V+YNNLSG+IP  GQ+ TF  +S+  N +L C      C+   E  
Sbjct:   588 PVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESN-HL-CGEHRFPCSEGTESA 645

Query:   152 AIKSKGREDEDDSAIDMVSLYWSFGASYVTVILGLLAI 189
              IK   R    D  I M ++  +FG+ ++  +L L+ +
Sbjct:   646 LIKRSRRSRGGD--IGM-AIGIAFGSVFLLTLLSLIVL 680

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IMP;IDA

GO:0009611 "response to wounding" evidence=IGI

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0045087 "innate immune response" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IGI

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 71/175 (40%), Positives = 102/175 (58%)

Query:    32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
             +D S N+L G +P  IG L+ +  LNLS+N  +G IP S +NLK IESLDLS+N+LSG I
Sbjct:   707 IDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTI 766

Query:    92 PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKP 151
             P  +  L+FL+  NVS+N L+G IP   Q +   ++S+ GN  L    + +SC      P
Sbjct:   767 PNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPP 826

Query:   152 AIKSKGREDEDDSAIDMVSLYWS-FGASY-VTVILGLLAILWINSFWRKRWFYFI 204
             A   K  E+E++   + V L W   G  Y V V+LGL AI  + + ++  W  F+
Sbjct:   827 AQHPKEEEEEEEEE-EQV-LNWKGVGIGYGVGVLLGL-AIAQLIASYKPEWLVFL 878

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 7.0e-24, P = 7.0e-24
 Identities = 72/186 (38%), Positives = 102/186 (54%)

Query:    23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
             GS       +D+S N+L G++P  IG L+++ VLN+S+N  +G IP S SNL  ++SLDL
Sbjct:   709 GSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDL 768

Query:    83 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINK 142
             S NRLSG IP +L EL FL+  N SYN L G IP   Q  + + +S+  N  L    + K
Sbjct:   769 SQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQK 828

Query:   143 SCNSAEEKPAIKSKGREDEDDSAIDMVSLYWSFGA-SYVTVILGLLAILWINSFWRKRWF 201
              C   EE+     K +E++D        L W   A  YV  +   LAI  I + +++ WF
Sbjct:   829 KCGGEEEE----DKEKEEKDKG------LSWVAAAIGYVPGLFCGLAIGHILTSYKRDWF 878

Query:   202 YFIDAC 207
               I +C
Sbjct:   879 MRIFSC 884

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00008153001 SubName- Full=Chromosome undetermined scaffold_1263, whole genome shotgun sequence; (794 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 5e-21
 Identities = 45/111 (40%), Positives = 71/111 (63%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           +L+ ++ L LS N+L+G +P E+   +K+  L+LSHN LSG IP SFS + ++  LDLS 
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL 135
           N+LSG+IP  L  +  L   N+S+N+L G +P  G +   + ++  GN+ L
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.7 bits (212), Expect = 2e-19
 Identities = 45/85 (52%), Positives = 57/85 (67%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS NQ +G VP ++G L ++  L LS N LSG IP   S+ K + SLDLS+N+LSGQI
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           PA   E+  LS  ++S N LSG IP
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 40/85 (47%), Positives = 56/85 (65%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS N L+G +P++IG    ++VL+L  N L G IP S +NL  +E L L++N+L GQI
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P +L ++  L    + YNNLSG IP
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 8e-17
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)

Query: 18  YELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMI 77
           YE+   ++LN+   LDL  N LTG +PS +G+L+ ++ L L  N LSG IP S  +L+ +
Sbjct: 230 YEIGGLTSLNH---LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 78  ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            SLDLS+N LSG+IP  +I+L  L   ++  NN +G IP
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.9 bits (192), Expect = 9e-17
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query: 31  GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           GL L    L G +P++I  L+ ++ +NLS N + G+IP S  ++  +E LDLS N  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 91  IPAQLIELNFLSNFNVSYNNLSGLIP 116
           IP  L +L  L   N++ N+LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 6/106 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L+ N+  G +P   G  +++  L+LS N  SG++PR   +L  +  L LS N+LSG+I
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137
           P +L     L + ++S+N LSG IP      +F E      L LS 
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPA-----SFSEMPVLSQLDLSQ 556

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 35/93 (37%), Positives = 59/93 (63%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           +L  ++ LDLS N L+G +P  +  LQ + +L+L  N  +G IP + ++L  ++ L L +
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           N+ SG+IP  L + N L+  ++S NNL+G IP+
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 2e-14
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDL  N L G +P+ + +L  +  L L+ N L G IPR    +K ++ + L  N LSG+I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P ++  L  L++ ++ YNNL+G IP
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIP 253

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LD+S N L G + S   D+  +++L+L+ N   G +P SF + K +E+LDLS N+ SG +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAV 491

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDK 118
           P +L  L+ L    +S N LSG IPD+
Sbjct: 492 PRKLGSLSELMQLKLSENKLSGEIPDE 518

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 37/84 (44%), Positives = 52/84 (61%)

Query: 34  LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
           L  N L+G +P EIG L  +  L+L +N L+G IP S  NLK ++ L L  N+LSG IP 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 94  QLIELNFLSNFNVSYNNLSGLIPD 117
            +  L  L + ++S N+LSG IP+
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S L ++  ++LS N + GN+P  +G +  + VL+LS+N  +GSIP S   L  +  L+L+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 84  NNRLSGQIPAQL 95
            N LSG++PA L
Sbjct: 499 GNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 1e-12
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NL  +  L L+ NQL G +P E+G ++ ++ + L +N LSG IP     L  +  LDL 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            N L+G IP+ L  L  L    +  N LSG IP
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 7e-12
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
           L N  NL Y+    L  N+L+G +P  I  LQK+  L+LS N LSG IP     L+ +E 
Sbjct: 256 LGNLKNLQYLF---LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312

Query: 80  LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           L L +N  +G+IP  L  L  L    +  N  SG IP
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 28/86 (32%), Positives = 47/86 (54%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L  N L G +P  +G  + +R + L  N  SG +P  F+ L ++  LD+SNN L G+I
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
            ++  ++  L   +++ N   G +PD
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDL 82
           +N + +V +DLS   ++G + S I  L  I+ +NLS+N LSG IP   F+    +  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP-DKGQYSTFDETSYRGN 132
           SNN  +G IP   I    L   ++S N LSG IP D G +S+       GN
Sbjct: 126 SNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 26/69 (37%), Positives = 45/69 (65%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S+   +V LDLS NQL+G +P+   ++  +  L+LS N LSG IP++  N++ +  +++S
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 84  NNRLSGQIP 92
           +N L G +P
Sbjct: 580 HNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 53  IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
           I  L L +  L G IP   S L+ ++S++LS N + G IP  L  +  L   ++SYN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 113 GLIPDK-GQYSTFDETSYRGNLYLS 136
           G IP+  GQ ++    +  GN  LS
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLS 503

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 31/85 (36%), Positives = 43/85 (50%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L  N  TG +P  +  L +++VL L  N  SG IP++      +  LDLS N L+G+I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P  L     L    +  N+L G IP
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 28/85 (32%), Positives = 42/85 (49%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L  N+ +G +P  +G    + VL+LS N L+G IP    +   +  L L +N L G+I
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P  L     L    +  N+ SG +P
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 6e-08
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 32 LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
          LDLS N+LT  +P      L  ++VL+LS N L+   P +FS L  + SLDLS N L
Sbjct: 5  LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG 89
           LDLS NQL+G +P  +G+++ +  +N+SHN L GS+P + + L +  S    N  L G
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 52  KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
            ++ L+LS+N L+     +F  L  ++ LDLS N L+   P     L  L + ++S NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
              N  NL  +  LDL+ N+L  N  SE+ +L  +  L+L +N ++   P        ++
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
            LDLS+N++   +P+ L  L  L N ++S+N+LS L       S  +     GN     P
Sbjct: 144 ELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202

Query: 139 TINKSCNSAEE 149
              +  ++ EE
Sbjct: 203 PEIELLSALEE 213

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.55
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.19
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.1
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.07
PLN03150	623	hypothetical protein; Provisional	99.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.5
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.44
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.43
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.21
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.2
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.18
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.11
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.1
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.1
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.71
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.54
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.51
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.46
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.03
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.83
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.32
PRK15386	426	type III secretion protein GogB; Provisional	95.24
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.07
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.56
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.77
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.7
smart00370	26	LRR Leucine-rich repeats, outliers.	92.7
PRK15386	426	type III secretion protein GogB; Provisional	92.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.77
smart00370	26	LRR Leucine-rich repeats, outliers.	91.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.7
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	88.99
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	88.85
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.72
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	86.47
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	85.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.75
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	84.05
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.97
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.32
PTZ00370	296	STEVOR; Provisional	81.3
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	81.11

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=149.57  Aligned_cols=118  Identities=32%  Similarity=0.529  Sum_probs=106.5

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      .++.|+|++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++|.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCC--CCCCCcCcccccCccCCCCCCCCCCCC
Q 047563          108 YNNLSGLIPDK--GQYSTFDETSYRGNLYLSCPTINKSCN  145 (222)
Q Consensus       108 ~N~l~~~~p~~--~~l~~l~~l~l~~n~~~c~~~~~~~C~  145 (222)
                      +|.++|.+|..  ..+..+..+++.+|+.+|+.+....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999998875  223455678899999999877666664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=2.4e-16  Score=149.01  Aligned_cols=110  Identities=43%  Similarity=0.628  Sum_probs=67.3

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      ++|++++.+|.. ..+++|+.+++.+|++.+
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCccee
Confidence            666666555543 445555666666655443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.55  E-value=1.2e-14  Score=137.64  Aligned_cols=116  Identities=39%  Similarity=0.647  Sum_probs=106.4

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+.+..|..+..+++|+.|++++|.+++.+|..|..+++|+.|++++|++++.+|..+..+++|+.
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      +++++|++.+.+|..+.+..+....+.+|+.+|++.
T Consensus       576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999988777788888889999888754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.31  E-value=1.6e-13  Score=102.28  Aligned_cols=112  Identities=33%  Similarity=0.539  Sum_probs=83.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~  103 (222)
                      ++.+|+.|++++|+++ .+|..++.++.|+.|+++.|++. ..|..|+.++.|+.|||..|++.. .+|..|..+..|+.
T Consensus        54 ~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            4567777777777777 66666777777777777777776 677777777777777777777642 45677777777777


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |+++.|.+.-.+|+.+.+++|+.+.++.|.++..|
T Consensus       132 lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp  166 (264)
T KOG0617|consen  132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP  166 (264)
T ss_pred             HHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence            77777777777778788888888888888776654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-12  Score=113.21  Aligned_cols=112  Identities=27%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      +|++|+.|+||+|.|....++.+...++|+.|+|+.|.++...+.+|..|..|+.|+|+.|+++......|.++++|+.|
T Consensus       291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            56777777777777777777777667777777777777775556667777777777777777665555556666677777


Q ss_pred             ecccccCCCCCCCC----CCCCCcCcccccCccCCC
Q 047563          105 NVSYNNLSGLIPDK----GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       105 ~l~~N~l~~~~p~~----~~l~~l~~l~l~~n~~~c  136 (222)
                      ||+.|.++..+.+.    ..+++|+.|.+.||++..
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~  406 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS  406 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence            77777666655543    235566666666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=5.3e-11  Score=90.50  Aligned_cols=115  Identities=29%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             CCcEeeeCCCCCCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCch
Q 047563           15 KNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA   93 (222)
Q Consensus        15 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~   93 (222)
                      +.+.......+...++.|+|++|.|+. +. .+. .+.+|+.|++++|.++ .++ .+..++.|+.|++++|+|+ .++.
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~   81 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISE   81 (175)
T ss_dssp             -------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CH
T ss_pred             ccccccccccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-cccc
Confidence            344444544566788999999999994 33 344 5789999999999998 343 4778999999999999999 4544


Q ss_pred             hh-hcCcccCceecccccCCCCCCCC--CCCCCcCcccccCccC
Q 047563           94 QL-IELNFLSNFNVSYNNLSGLIPDK--GQYSTFDETSYRGNLY  134 (222)
Q Consensus        94 ~~-~~l~~L~~L~l~~N~l~~~~p~~--~~l~~l~~l~l~~n~~  134 (222)
                      .+ ..+++|+.|++++|++.....-.  ..+++|+.+++.+||.
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            44 46899999999999998754321  5688899999999995

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.10  E-value=2.6e-12  Score=95.93  Aligned_cols=115  Identities=25%  Similarity=0.398  Sum_probs=104.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      +.|+.|+.|+++-|.+. ..|..|+.++.|+.|||.+|++. ..+|..|..+..|+.|+|++|.+. .+|..++.+++|+
T Consensus        76 ssl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq  153 (264)
T KOG0617|consen   76 SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ  153 (264)
T ss_pred             hhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence            67899999999999999 89999999999999999999875 568899999999999999999999 7888899999999


Q ss_pred             ceecccccCCCCCCCCCCCCCcCcccccCccCCCCCCC
Q 047563          103 NFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI  140 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~  140 (222)
                      .|.+..|.+-..+.+.+.++.|+.+.+.||.+.-.||.
T Consensus       154 il~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  154 ILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             EEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence            99999999998888888899999999999997766664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.07  E-value=1.9e-11  Score=101.82  Aligned_cols=110  Identities=30%  Similarity=0.484  Sum_probs=91.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      +.++.|+.|+|++|.+. .+|..++.+-.|+.++++.|++. .+|.....+..++.+-.++|++....|+.+..|.+|..
T Consensus       432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            34567777888888887 77777778878888888888887 77777766777777777778888667777899999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      ||+.+|.+..++|..+.+++++++.+.||||.
T Consensus       510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eccCCCchhhCChhhccccceeEEEecCCccC
Confidence            99999999999998899999999999999976

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=4.7e-10  Score=101.58  Aligned_cols=93  Identities=37%  Similarity=0.568  Sum_probs=83.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcC-cccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIEL-NFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~  102 (222)
                      ..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|+++|.+|..+... ..+.
T Consensus       439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~  518 (623)
T PLN03150        439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA  518 (623)
T ss_pred             hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence            357899999999999999999999999999999999999999999999999999999999999999999988764 4667


Q ss_pred             ceecccccCCCCCC
Q 047563          103 NFNVSYNNLSGLIP  116 (222)
Q Consensus       103 ~L~l~~N~l~~~~p  116 (222)
                      .+++.+|...+..|
T Consensus       519 ~l~~~~N~~lc~~p  532 (623)
T PLN03150        519 SFNFTDNAGLCGIP  532 (623)
T ss_pred             eEEecCCccccCCC
Confidence            88899887655433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.04  E-value=8.4e-11  Score=97.74  Aligned_cols=92  Identities=23%  Similarity=0.250  Sum_probs=81.3

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      +.|++|++|+|++|.+++..+..|.++..++.|.|..|.+.......|.++..|++|+|.+|+|+...|..|..+.+|..
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            56889999999999999888899999999999999999998777778999999999999999999888889999999999


Q ss_pred             eecccccCCCCC
Q 047563          104 FNVSYNNLSGLI  115 (222)
Q Consensus       104 L~l~~N~l~~~~  115 (222)
                      |++-.|++.+-.
T Consensus       351 l~l~~Np~~CnC  362 (498)
T KOG4237|consen  351 LNLLSNPFNCNC  362 (498)
T ss_pred             eehccCcccCcc
Confidence            999999886554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.03  E-value=1.7e-10  Score=72.61  Aligned_cols=60  Identities=43%  Similarity=0.594  Sum_probs=39.7

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcC
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL   87 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l   87 (222)
                      +|+.|++++|.++...+..|..+++|+.|++++|.++...|..|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566677777777755556666667777777777766655556666666666666666653

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.97  E-value=9.3e-11  Score=101.86  Aligned_cols=92  Identities=24%  Similarity=0.206  Sum_probs=56.4

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      |++|+.|.|..|.+.......|-.+.+++.|+|+.|+++..-.+++.+|.+|+.|+||.|.|+...++.+..+.+|+.|+
T Consensus       244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld  323 (873)
T KOG4194|consen  244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD  323 (873)
T ss_pred             chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence            55666666666666655555566666666666666666655555556666666666666666656666666666666666


Q ss_pred             cccccCCCCCCC
Q 047563          106 VSYNNLSGLIPD  117 (222)
Q Consensus       106 l~~N~l~~~~p~  117 (222)
                      |++|.++...+.
T Consensus       324 Ls~N~i~~l~~~  335 (873)
T KOG4194|consen  324 LSSNRITRLDEG  335 (873)
T ss_pred             ccccccccCChh
Confidence            666666655543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=3e-10  Score=71.41  Aligned_cols=61  Identities=43%  Similarity=0.561  Sum_probs=54.8

Q ss_pred             cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccC
Q 047563           51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL  111 (222)
Q Consensus        51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l  111 (222)
                      ++|+.|++++|.++...+..|.++++|+.|++++|+++...|+.|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999966668899999999999999999977788899999999999999875

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.95  E-value=7.5e-11  Score=98.36  Aligned_cols=106  Identities=24%  Similarity=0.370  Sum_probs=82.4

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCcc-CCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .|..|.-|+|..|.+. ..| +|.+.+.|+.++++.|.++ .+|.. ...+.++.+|||.+|+++ +.|+.+.-+.+|..
T Consensus       204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~r  279 (565)
T KOG0472|consen  204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLER  279 (565)
T ss_pred             chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhh
Confidence            3445555566666665 444 4566666666666666665 44443 347889999999999999 89999999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      ||+++|.+++.++..+.+ .|+.+.+.|||..
T Consensus       280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             hcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            999999999999999888 8999999999973

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.82  E-value=3.7e-10  Score=93.98  Aligned_cols=123  Identities=25%  Similarity=0.286  Sum_probs=93.1

Q ss_pred             EEEEEECCcEeeeCCCCCC-cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEc-cCCc
Q 047563            9 KVEFVTKNRYELYNGSNLN-YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL-SNNR   86 (222)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s~N~   86 (222)
                      .+++-.+|..++..  +++ ..+.++|..|.|+.+.|..|+.+++|+.|||++|.|+...|++|.++.+|..|-+ ++|+
T Consensus        50 ~VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             eEEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            34555566665553  354 6667899999999888888999999999999999999888999999998766655 4488


Q ss_pred             CCCcCchhhhcCcccCceecccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563           87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus        87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~  133 (222)
                      |+....+.|.++.+|+.|.+.-|++.+...+. +.+++++.|++.+|.
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~  175 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK  175 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence            98766677888888888888888887776555 556666666655554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=2.4e-09  Score=81.48  Aligned_cols=100  Identities=27%  Similarity=0.330  Sum_probs=48.3

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccC-CCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSF-SNLKMIESLDLSNNRLSGQI-PAQLIELNFLS  102 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~  102 (222)
                      .+.+|+.|+|++|.|+. ++ .+..++.|+.|++++|.++. ++..+ ..+++|+.|++++|+|.... -..+..+++|+
T Consensus        40 ~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            36789999999999994 43 47789999999999999994 44333 46899999999999997422 24567889999


Q ss_pred             ceecccccCCCCCCCC-----CCCCCcCccc
Q 047563          103 NFNVSYNNLSGLIPDK-----GQYSTFDETS  128 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-----~~l~~l~~l~  128 (222)
                      .|++.+|+++.. +..     ..+++|+.++
T Consensus       117 ~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  117 VLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             eeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            999999999855 222     3466666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.81  E-value=6e-10  Score=101.10  Aligned_cols=107  Identities=30%  Similarity=0.423  Sum_probs=68.3

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|+|++|++.......+.+++.|+.|+|++|.++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL  457 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence            4566666666666666433444556666666666666666 55566666666666666666666 556 56777777778


Q ss_pred             ecccccCCCCC-CCCCCCCCcCcccccCccC
Q 047563          105 NVSYNNLSGLI-PDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       105 ~l~~N~l~~~~-p~~~~l~~l~~l~l~~n~~  134 (222)
                      |++.|+++... |....-+.|+.+++.||..
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            88877776543 2222226788888888874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.80  E-value=9.3e-10  Score=96.67  Aligned_cols=85  Identities=40%  Similarity=0.481  Sum_probs=51.9

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      |..|+.||||+|+++ +.|..+..-+++..|+|++|.|.......|.+|..|-.||||+|++. .+|..+..+..|+.|.
T Consensus       102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            456666666666666 56666666666666666666666322234556666666666666666 4555556666666666


Q ss_pred             cccccCC
Q 047563          106 VSYNNLS  112 (222)
Q Consensus       106 l~~N~l~  112 (222)
                      +++|++.
T Consensus       180 Ls~NPL~  186 (1255)
T KOG0444|consen  180 LSNNPLN  186 (1255)
T ss_pred             cCCChhh
Confidence            6666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.71  E-value=9.4e-10  Score=99.84  Aligned_cols=114  Identities=24%  Similarity=0.310  Sum_probs=101.9

Q ss_pred             eeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCc
Q 047563           20 LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELN   99 (222)
Q Consensus        20 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~   99 (222)
                      .|.+..++.|+.|++.+|.++..+-+.+.++++|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+..++
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~  430 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG  430 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh
Confidence            566778899999999999999988888999999999999999998444455899999999999999999 8899999999


Q ss_pred             ccCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      .|+.|...+|++...+ +..+++.|+.++++.|.+.
T Consensus       431 ~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence            9999999999999876 7788999999999888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.71  E-value=1.7e-09  Score=95.03  Aligned_cols=111  Identities=27%  Similarity=0.333  Sum_probs=93.5

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +|++|+||.|+++ .+|..++.++.|+.|++.+|.+. .-+|..++.|.+|+.+..++|.+. ..|..+..|..|+.|.+
T Consensus       269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence            5666777777777 77888888888888888888875 346888888889999999999988 88999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCcCcccccCccCCCCCCC
Q 047563          107 SYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI  140 (222)
Q Consensus       107 ~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~  140 (222)
                      +.|.+-..+..+..++.+..|+++.|+.+-.||.
T Consensus       347 ~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  347 DHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            9999998877767788999999999998877664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.51  E-value=1.7e-08  Score=81.86  Aligned_cols=106  Identities=27%  Similarity=0.368  Sum_probs=67.4

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc--------------
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP--------------   92 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------------   92 (222)
                      ..|+.+|||+|.|+ .+..+..-+|.++.|++++|.+. .+ +.+..+++|+.|||++|.++ .+-              
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            36677777777777 55555556667777777777765 22 22556667777777777654 222              


Q ss_pred             --------hhhhcCcccCceecccccCCCCCC--CCCCCCCcCcccccCccCCC
Q 047563           93 --------AQLIELNFLSNFNVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus        93 --------~~~~~l~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c  136 (222)
                              +.+..+-+|..||+++|++.....  .++.+++|.++.+.+||..-
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence                    223334466777777777765432  33778888888888888543

>PLN03210 Resistant to P

Probab=98.50  E-value=6.7e-07  Score=86.59  Aligned_cols=107  Identities=19%  Similarity=0.241  Sum_probs=79.9

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+.+|+.|++++|.+. .++..+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            3568888888888887 5677778888999999987764446664 6778889999998877656788888888889999


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      ++++|...+..|....+++|+.+++.++.
T Consensus       687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        687 DMSRCENLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             eCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence            98886543344443456677777776654

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.46  E-value=2.4e-08  Score=86.81  Aligned_cols=105  Identities=29%  Similarity=0.379  Sum_probs=66.2

Q ss_pred             ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563           29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  108 (222)
Q Consensus        29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  108 (222)
                      |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|++. .+|..+..+ .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            344444444444 44444444445555555555554 45555555555566666666665 455555644 367788888


Q ss_pred             ccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          109 NNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       109 N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      |+++.++-....++.|+.+.+++||+...
T Consensus       221 Nkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  221 NKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             CceeecchhhhhhhhheeeeeccCCCCCC
Confidence            98888877778888899999999997553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.44  E-value=1.1e-06  Score=80.91  Aligned_cols=77  Identities=29%  Similarity=0.502  Sum_probs=36.6

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|+|++|.++ .+|..+.  ++|+.|++++|.++ .+|..+.  .+|+.|++++|++. .+|..+.  .+|+.|++
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            45666666666666 3443332  35566666666555 3343322  23444444444444 3333322  23444444


Q ss_pred             ccccCC
Q 047563          107 SYNNLS  112 (222)
Q Consensus       107 ~~N~l~  112 (222)
                      ++|+++
T Consensus       270 s~N~L~  275 (754)
T PRK15370        270 FHNKIS  275 (754)
T ss_pred             cCCccC
Confidence            444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=9.4e-09  Score=91.60  Aligned_cols=108  Identities=30%  Similarity=0.344  Sum_probs=84.2

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++++.|+|++|+++. .. .+..++.|+.|||++|.+. .+|.--..-..|+.|.+++|.++. + ..+.++.+|..||
T Consensus       186 l~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHhhhhhhccc
Confidence            5688899999999984 33 6888999999999999998 566432222349999999999873 2 4578899999999


Q ss_pred             cccccCCCCCCC--CCCCCCcCcccccCccCCCCC
Q 047563          106 VSYNNLSGLIPD--KGQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       106 l~~N~l~~~~p~--~~~l~~l~~l~l~~n~~~c~~  138 (222)
                      ++.|-+.+--.-  .+.+..|+.|.++|||..|.+
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999988764322  256778899999999977743

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.43  E-value=4.5e-07  Score=83.52  Aligned_cols=81  Identities=28%  Similarity=0.426  Sum_probs=45.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ..++|+.|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|
T Consensus       218 l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L  288 (754)
T PRK15370        218 LQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYL  288 (754)
T ss_pred             hccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEE
Confidence            3456777777777777 4454432  35666666666665 4454432  35566666666665 3444332  345555


Q ss_pred             ecccccCCCC
Q 047563          105 NVSYNNLSGL  114 (222)
Q Consensus       105 ~l~~N~l~~~  114 (222)
                      ++++|++++.
T Consensus       289 ~Ls~N~Lt~L  298 (754)
T PRK15370        289 SVYDNSIRTL  298 (754)
T ss_pred             ECCCCccccC
Confidence            5555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.40  E-value=4.9e-08  Score=79.21  Aligned_cols=65  Identities=29%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             ccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCC
Q 047563           47 IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL  114 (222)
Q Consensus        47 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~  114 (222)
                      ......|+.+||++|.++ .+..+..-++.++.|+++.|++. .+ +.+..+++|..||+++|.++..
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh
Confidence            344567899999999998 77778888899999999999998 44 3488999999999999988754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.33  E-value=7.5e-07  Score=82.01  Aligned_cols=37  Identities=22%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             ccCceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      +|+.|++++|+++.++.....++.+..+++.+|++..
T Consensus       423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence            3455555566655443333556677777777777543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.21  E-value=1.4e-07  Score=82.16  Aligned_cols=108  Identities=32%  Similarity=0.443  Sum_probs=76.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++..|+.|||+.|+++ .+|..++.++ |+.|-+++|+++ .+|..++.+.+|..|+.+.|.+. .+|..+..+.+|+.
T Consensus       118 ~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~  193 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence            35667777777777777 6666666654 677777777776 67777777777777777777777 66777777777777


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      |.+..|++...+++...+ .|..++++.|+..-
T Consensus       194 l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~  225 (722)
T KOG0532|consen  194 LNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY  225 (722)
T ss_pred             HHHhhhhhhhCCHHHhCC-ceeeeecccCceee
Confidence            777777777776665433 45666776666543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.20  E-value=3.8e-07  Score=75.67  Aligned_cols=110  Identities=22%  Similarity=0.238  Sum_probs=65.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcC---CCeEEccCCcCCC----CcCccCCCC-CCCCeEEccCCcCCCc----Cc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQK---IRVLNLSHNCLSG----SIPRSFSNL-KMIESLDLSNNRLSGQ----IP   92 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p   92 (222)
                      .+++|+.|++++|.+....+..+..+.+   |+.|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            3567777777777777555555555554   7777777777652    222334455 6777777777777632    22


Q ss_pred             hhhhcCcccCceecccccCCCCCC-----CCCCCCCcCcccccCccC
Q 047563           93 AQLIELNFLSNFNVSYNNLSGLIP-----DKGQYSTFDETSYRGNLY  134 (222)
Q Consensus        93 ~~~~~l~~L~~L~l~~N~l~~~~p-----~~~~l~~l~~l~l~~n~~  134 (222)
                      ..+..+..|+.|++++|.+++...     ....+++|+.+++.+|.+
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            334455567777777777663211     012234666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.19  E-value=7.4e-06  Score=79.48  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=78.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|+|+++...+.+|. +..+++|+.|++++|..-..+|..+..+++|+.|++++|.-...+|..+ .+++|+.
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence            4688999999998765446665 7788999999999887666888889999999999999875444667654 6788888


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      |++++|...+..|..  ..+++.+++.+|.
T Consensus       709 L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~  736 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI--STNISWLDLDETA  736 (1153)
T ss_pred             EeCCCCCCccccccc--cCCcCeeecCCCc
Confidence            888887654444432  3455566666555

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.18  E-value=2e-07  Score=67.39  Aligned_cols=88  Identities=22%  Similarity=0.288  Sum_probs=57.5

Q ss_pred             CCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ...|+..+|++|.+. ..|+.|. .++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..+.+|-.|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            345666677777776 4444444 3446677777777776 66666777777777777777776 566666667777777


Q ss_pred             ecccccCCCCCC
Q 047563          105 NVSYNNLSGLIP  116 (222)
Q Consensus       105 ~l~~N~l~~~~p  116 (222)
                      +..+|.+..++-
T Consensus       129 ds~~na~~eid~  140 (177)
T KOG4579|consen  129 DSPENARAEIDV  140 (177)
T ss_pred             cCCCCccccCcH
Confidence            777766665543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.17  E-value=3.3e-07  Score=76.06  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=63.8

Q ss_pred             CcccEEEeecCCCCC----CCChhccCC-cCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCc----Cch
Q 047563           27 NYMVGLDLSCNQLTG----NVPSEIGDL-QKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQ----IPA   93 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~   93 (222)
                      ++|+.|++++|.++.    .+...+..+ ++|+.|++++|.+++.    .+..+..+.+|+.|++++|.+++.    ++.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            347777777777763    122334455 6777777777777632    223455566777777777777632    222


Q ss_pred             hhhcCcccCceecccccCCCCCCC-----CCCCCCcCcccccCccC
Q 047563           94 QLIELNFLSNFNVSYNNLSGLIPD-----KGQYSTFDETSYRGNLY  134 (222)
Q Consensus        94 ~~~~l~~L~~L~l~~N~l~~~~p~-----~~~l~~l~~l~l~~n~~  134 (222)
                      .+...++|+.|++++|.+++....     ...+++|+.+++.+|+.
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            334455777777777776533211     13456677777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.14  E-value=1.2e-06  Score=75.17  Aligned_cols=104  Identities=37%  Similarity=0.563  Sum_probs=59.7

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCc-CCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQ-KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .+|......+.|..|
T Consensus       115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            345666666666666 4444444443 6666666666666 45455556666666666666666 445444455666666


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCc
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGN  132 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n  132 (222)
                      ++++|+++.+++.......+..+.+.+|
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCC
Confidence            6666666655543223333445555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.11  E-value=2.9e-07  Score=66.60  Aligned_cols=113  Identities=20%  Similarity=0.314  Sum_probs=87.1

Q ss_pred             CccCcccEEEEEECCcEeeeCC---CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCC
Q 047563            2 LTYPQQVKVEFVTKNRYELYNG---SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE   78 (222)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~   78 (222)
                      |..-.|.+.+.++++.++.|+.   ..++.++.|+|++|.|+ ..|.++..++.|+.++++.|.+. ..|..+..|.+|.
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            3345677788888998888754   34568899999999999 88999999999999999999998 7777776799999


Q ss_pred             eEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCC
Q 047563           79 SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  117 (222)
Q Consensus        79 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  117 (222)
                      .|+..+|.+. .+|-.+..-+..-...+.++++.+..+.
T Consensus       127 ~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  127 MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             HhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            9999999988 5655433333334445666777665544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.10  E-value=3e-06  Score=79.44  Aligned_cols=108  Identities=25%  Similarity=0.245  Sum_probs=73.6

Q ss_pred             CCCCCcccEEEeecCC--CCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563           23 GSNLNYMVGLDLSCNQ--LTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNF  100 (222)
Q Consensus        23 ~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  100 (222)
                      ..+.+.|++|-+..|.  +....+..|..++.|..|||++|.--+.+|..++.|.+|++|++++..+. .+|..+..+..
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~  619 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK  619 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence            3445567777777775  44333444667788888888877665677887888888888888888877 77777788878


Q ss_pred             cCceecccccCCCCCCCC-CCCCCcCcccccC
Q 047563          101 LSNFNVSYNNLSGLIPDK-GQYSTFDETSYRG  131 (222)
Q Consensus       101 L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~  131 (222)
                      |.+|++..+.-...+|.. ..+++|+.+.+..
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeec
Confidence            888887776544444444 3366666666443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.10  E-value=3.1e-06  Score=78.04  Aligned_cols=81  Identities=30%  Similarity=0.327  Sum_probs=54.3

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      .|+.|++++|.+++ +|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+..+++|..++++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            34445555555442 3321   235566666666665 34432   235777888888888 788889999999999999


Q ss_pred             cccCCCCCCC
Q 047563          108 YNNLSGLIPD  117 (222)
Q Consensus       108 ~N~l~~~~p~  117 (222)
                      +|++++..+.
T Consensus       454 ~N~Ls~~~~~  463 (788)
T PRK15387        454 GNPLSERTLQ  463 (788)
T ss_pred             CCCCCchHHH
Confidence            9999987554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=5.2e-06  Score=48.35  Aligned_cols=36  Identities=44%  Similarity=0.679  Sum_probs=17.0

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS   64 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~   64 (222)
                      +|+.|++++|.|+ .+|+.+.++++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555 33444455555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=3.4e-06  Score=49.10  Aligned_cols=36  Identities=42%  Similarity=0.674  Sum_probs=20.0

Q ss_pred             CCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563           52 KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS   88 (222)
Q Consensus        52 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   88 (222)
                      +|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4566666666665 44444556666666666666555

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.99  E-value=3.1e-06  Score=72.69  Aligned_cols=108  Identities=33%  Similarity=0.540  Sum_probs=59.2

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCcc-----------------------CCCCCCCCeE
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-----------------------FSNLKMIESL   80 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----------------------~~~l~~L~~L   80 (222)
                      .+++.|+.|+++.|.++ ..|.....+++|+.|++++|.++ .+|..                       +..+..+..+
T Consensus       160 ~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhccccccc
Confidence            45566666666666666 44443335555666666666655 34433                       3333444444


Q ss_pred             EccCCcCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563           81 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus        81 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      .+.+|++. ..+..+..+++++.|++++|.++.... .+.+.+++.+++.+|...
T Consensus       238 ~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccCCceee-eccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence            44444444 224455556666666666666665544 455566666666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.82  E-value=8.6e-06  Score=76.39  Aligned_cols=86  Identities=33%  Similarity=0.457  Sum_probs=76.9

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..|+.|++|||++|.=-+.+|..++.|-+|++|++++..++ .+|..+.+|..|.+|++..+.-...+|.....+.+|++
T Consensus       568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            35899999999998877899999999999999999999999 99999999999999999988865566777788999999


Q ss_pred             eeccccc
Q 047563          104 FNVSYNN  110 (222)
Q Consensus       104 L~l~~N~  110 (222)
                      |.+..-.
T Consensus       647 L~l~~s~  653 (889)
T KOG4658|consen  647 LRLPRSA  653 (889)
T ss_pred             EEeeccc
Confidence            9887654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=3.5e-05  Score=59.36  Aligned_cols=83  Identities=20%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc--hhhhcCcccCce
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP--AQLIELNFLSNF  104 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L  104 (222)
                      .+...+||++|.+- ..+ .|..++.|.+|.+++|+|+...|.--..+++|+.|.|.+|+|. .+-  +.+..+++|+.|
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            34555666666655 222 2555666666666666666555544445556666666666654 221  123345566666


Q ss_pred             ecccccCC
Q 047563          105 NVSYNNLS  112 (222)
Q Consensus       105 ~l~~N~l~  112 (222)
                      .+-+|+.+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            66666654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=5.9e-06  Score=70.13  Aligned_cols=113  Identities=23%  Similarity=0.160  Sum_probs=71.1

Q ss_pred             CCCCcccEEEeecCCCCCCC--ChhccCCcCCCeEEccCCcCCCCcCcc-CCCCCCCCeEEccCCcCCCcC-chhhhcCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNV--PSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSGQI-PAQLIELN   99 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~   99 (222)
                      ..+++++.||||.|-+..-.  -....++++|+.|+++.|.+....... -..+++|+.|.|+.+.++... ......++
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            46778888888888777422  244567888888888888876322222 235677888888888776432 22344567


Q ss_pred             ccCceecccccCCCCC-CCCCCCCCcCcccccCccCCC
Q 047563          100 FLSNFNVSYNNLSGLI-PDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       100 ~L~~L~l~~N~l~~~~-p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      +|..|++..|...... .....++.|..|++++|++.-
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~  260 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID  260 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence            7777777777422211 112456667777777776544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.67  E-value=6.3e-05  Score=57.97  Aligned_cols=102  Identities=20%  Similarity=0.177  Sum_probs=75.3

Q ss_pred             cEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccc
Q 047563           30 VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  109 (222)
Q Consensus        30 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  109 (222)
                      +.++|++..+... ..-=..+.+...+||++|.+.  --+.|+.++.|.+|.+++|+|+..-|..-.-+++|..|.+.+|
T Consensus        22 ~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            4566777666522 111113456778999999986  3345788999999999999999777766666788999999999


Q ss_pred             cCCCCCC--CCCCCCCcCcccccCccC
Q 047563          110 NLSGLIP--DKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       110 ~l~~~~p--~~~~l~~l~~l~l~~n~~  134 (222)
                      .+.....  ....++.|+.+.+-+|+.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCch
Confidence            9876532  236678899999999984

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.63  E-value=1.8e-05  Score=68.63  Aligned_cols=105  Identities=28%  Similarity=0.410  Sum_probs=54.4

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|..|++..|.|.+ +...+..+++|+.|++++|.|+...+  +..+..|+.|++++|.|+. + ..+..+..|+.+
T Consensus        93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l  167 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD-I-SGLESLKSLKLL  167 (414)
T ss_pred             cccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-c-cCCccchhhhcc
Confidence            34566666666666663 22224456666666666666653332  2234446666666666652 2 223345566666


Q ss_pred             ecccccCCCCCCC-CCCCCCcCcccccCccC
Q 047563          105 NVSYNNLSGLIPD-KGQYSTFDETSYRGNLY  134 (222)
Q Consensus       105 ~l~~N~l~~~~p~-~~~l~~l~~l~l~~n~~  134 (222)
                      ++++|.+....+. ...+..+..+.+.+|..
T Consensus       168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence            6666666554442 12344444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.54  E-value=2.8e-06  Score=76.33  Aligned_cols=103  Identities=25%  Similarity=0.261  Sum_probs=83.2

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ..|...+.++|.+. ....++.-++.++.|+|++|.++...  .+..++.|++|||+.|.+. .+|..-..-..|..|.+
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            35667788999998 78888888999999999999998332  7888999999999999998 66653222235999999


Q ss_pred             ccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          107 SYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       107 ~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      ++|.++..- .+.++.+|+.|++..|.+
T Consensus       240 rnN~l~tL~-gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  240 RNNALTTLR-GIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             cccHHHhhh-hHHhhhhhhccchhHhhh
Confidence            999988653 346788999999988875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.51  E-value=3.9e-05  Score=66.50  Aligned_cols=106  Identities=23%  Similarity=0.293  Sum_probs=83.5

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+..+..+.++.|.+.. .-..+..+.++..|++..|.+. .+...+..+++|++|++++|.|+...  .+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence            46677778899999884 4445778899999999999998 44444778899999999999998443  35677889999


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      ++++|.++... ....+..+..+++.+|...
T Consensus       146 ~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  146 NLSGNLISDIS-GLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             eeccCcchhcc-CCccchhhhcccCCcchhh
Confidence            99999998763 3344778888888888744

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=3.9e-05  Score=65.23  Aligned_cols=62  Identities=27%  Similarity=0.214  Sum_probs=25.5

Q ss_pred             CCcccEEEeecCCCCCCC-ChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcC
Q 047563           26 LNYMVGLDLSCNQLTGNV-PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL   87 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l   87 (222)
                      +++|+.|.|+.+.++-.. ......+|++..|+|..|............+..|+.|+|++|++
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            345555555555554211 11222344444444444432222222233334444444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.0011  Score=53.03  Aligned_cols=83  Identities=23%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCC--cCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhh---cCccc
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN--CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLI---ELNFL  101 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L  101 (222)
                      ..|+.|.+.+-.++. . ..|..|++|+.|.++.|  .+.+..+.....+++|+++++++|++..  ++.+.   .+.+|
T Consensus        43 ~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence            355555555555542 2 23556788899999988  5555555555566889999999998862  33333   45567


Q ss_pred             CceecccccCCC
Q 047563          102 SNFNVSYNNLSG  113 (222)
Q Consensus       102 ~~L~l~~N~l~~  113 (222)
                      ..|++.+|..+.
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            788888887665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.0015  Score=53.44  Aligned_cols=88  Identities=28%  Similarity=0.314  Sum_probs=57.0

Q ss_pred             CCCCcccEEEeecCCCCC--CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCch-hhhcCcc
Q 047563           24 SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA-QLIELNF  100 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~  100 (222)
                      +..+.++.+||.+|.|+.  .+...+.+||.|+.|+++.|.+...+..--..+.+|+.|-|.+..+...... .+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            345677788888888872  2344566888888888888888744332223556788888877776543322 2345666


Q ss_pred             cCceecccccC
Q 047563          101 LSNFNVSYNNL  111 (222)
Q Consensus       101 L~~L~l~~N~l  111 (222)
                      ++.|.++.|.+
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            66777776643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0041  Score=49.79  Aligned_cols=89  Identities=18%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC--cCCCcCchhhhcCcccCceecccccCCCC--CCCC
Q 047563           43 VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN--RLSGQIPAQLIELNFLSNFNVSYNNLSGL--IPDK  118 (222)
Q Consensus        43 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~  118 (222)
                      +....-.+..|+.+.+.+..++  .-..|..|++|+.|.++.|  ++.+.++-....+++|+++++++|++.-+  ++..
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            3333444556666666665554  2235778899999999999  77766666667779999999999998731  2222


Q ss_pred             CCCCCcCcccccCcc
Q 047563          119 GQYSTFDETSYRGNL  133 (222)
Q Consensus       119 ~~l~~l~~l~l~~n~  133 (222)
                      ..+.+|..+++..+.
T Consensus       113 ~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  113 KELENLKSLDLFNCS  127 (260)
T ss_pred             hhhcchhhhhcccCC
Confidence            445566666655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.03  E-value=0.0047  Score=56.92  Aligned_cols=85  Identities=21%  Similarity=0.282  Sum_probs=43.7

Q ss_pred             CCCCcccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCccc
Q 047563           24 SNLNYMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFL  101 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L  101 (222)
                      .-|+.|+.|.+++-.+... .-....++++|..||+++.+++..  ..++.|++|+.|.+.+=.+.. ..-..+..+++|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            3456666666666544322 123344566666666666666522  345556666665555443331 111234455666


Q ss_pred             Cceeccccc
Q 047563          102 SNFNVSYNN  110 (222)
Q Consensus       102 ~~L~l~~N~  110 (222)
                      +.||+|...
T Consensus       223 ~vLDIS~~~  231 (699)
T KOG3665|consen  223 RVLDISRDK  231 (699)
T ss_pred             Ceeeccccc
Confidence            666666543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.83  E-value=0.0048  Score=56.90  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=34.1

Q ss_pred             CcCCCeEEccCCcCCC-CcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCC--CCCCCCCCcCc
Q 047563           50 LQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI--PDKGQYSTFDE  126 (222)
Q Consensus        50 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~--p~~~~l~~l~~  126 (222)
                      +|+|+.|.+++-.+.. .......++++|..||+|+.+++..  ..+..+++|+.|.+.+=.+..-.  .+...++.|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4555555554443321 1122234445555555555555421  33444555555544443333211  11134455555


Q ss_pred             ccccC
Q 047563          127 TSYRG  131 (222)
Q Consensus       127 l~l~~  131 (222)
                      |+++.
T Consensus       225 LDIS~  229 (699)
T KOG3665|consen  225 LDISR  229 (699)
T ss_pred             eeccc
Confidence            55443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.76  E-value=0.0029  Score=30.80  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=9.7

Q ss_pred             ccEEEeecCCCCCCCChhcc
Q 047563           29 MVGLDLSCNQLTGNVPSEIG   48 (222)
Q Consensus        29 L~~L~Ls~N~l~~~~p~~~~   48 (222)
                      |++|||++|.++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444343

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.56  E-value=0.0038  Score=51.98  Aligned_cols=109  Identities=14%  Similarity=0.213  Sum_probs=73.5

Q ss_pred             CCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcCchhhh-
Q 047563           26 LNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQIPAQLI-   96 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-   96 (222)
                      .+.|+.+.++.|.|...    ....|...++|+.|||..|.++..    +...++.+++|+.|+++++.+...-...+. 
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            46778888888877632    234567788888888888888632    234466777888888888887654333322 


Q ss_pred             ----cCcccCceecccccCCCCCC-----CCCCCCCcCcccccCccC
Q 047563           97 ----ELNFLSNFNVSYNNLSGLIP-----DKGQYSTFDETSYRGNLY  134 (222)
Q Consensus        97 ----~l~~L~~L~l~~N~l~~~~p-----~~~~l~~l~~l~l~~n~~  134 (222)
                          ..++|..+.+.+|.++..-.     .....+.|..|.+.+|.+
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                35688888888888764211     113467788888888876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.51  E-value=0.00086  Score=54.40  Aligned_cols=95  Identities=20%  Similarity=0.262  Sum_probs=65.9

Q ss_pred             EEEEEECCcEeeeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC-ccCCCCCCCCeEEccCCcC
Q 047563            9 KVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLDLSNNRL   87 (222)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l   87 (222)
                      ++.++-.|...+=--..|+.|++|.||-|.|+..-|  +..++.|+.|+|..|.|...-. ..+.++++|+.|.|..|.-
T Consensus        23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             hhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            344444444332222458899999999999985443  5678899999999999873322 3478899999999999987


Q ss_pred             CCcCch-----hhhcCcccCcee
Q 047563           88 SGQIPA-----QLIELNFLSNFN  105 (222)
Q Consensus        88 ~~~~p~-----~~~~l~~L~~L~  105 (222)
                      .|.-+.     .+.-+++|+.||
T Consensus       101 c~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  101 CGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccccchhHHHHHHHHcccchhcc
Confidence            765543     344577777775

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.32  E-value=0.022  Score=46.89  Aligned_cols=63  Identities=32%  Similarity=0.445  Sum_probs=48.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCcc-CCCCCCCCeEEccCCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNR   86 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~   86 (222)
                      .+|+.|+.|+|++|.+...+...-.++.+|+.|-|.+..+.+....+ ...++.++.|+++.|.
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            47999999999999999655443246789999999888887555443 5678888888888883

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.24  E-value=0.043  Score=47.37  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN   85 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N   85 (222)
                      .+++++.|+++++.++ .+|. +  .++|+.|.++++.--..+|..+.  .+|+.|.+++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            3567778888888777 4452 1  23577777766332225554432  46667777666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.09  E-value=0.0098  Score=28.86  Aligned_cols=17  Identities=53%  Similarity=0.833  Sum_probs=8.2

Q ss_pred             CCeEEccCCcCCCcCchh
Q 047563           77 IESLDLSNNRLSGQIPAQ   94 (222)
Q Consensus        77 L~~L~Ls~N~l~~~~p~~   94 (222)
                      |++|++++|+++ .+|..
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            445555555555 44443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.07  E-value=0.01  Score=49.46  Aligned_cols=110  Identities=15%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             CCCcccEEEeecCCCCCCCChh----ccCCcCCCeEEccCCcCCCCc-------------CccCCCCCCCCeEEccCCcC
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSE----IGDLQKIRVLNLSHNCLSGSI-------------PRSFSNLKMIESLDLSNNRL   87 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~Ls~N~l   87 (222)
                      ..+.|++||||.|.+...-+..    +.....|+.|.|.+|.+.-.-             ....+.-+.|+.+...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            3458889999999888544443    345677888888888775111             11133456778888888877


Q ss_pred             CCcC----chhhhcCcccCceecccccCCCCCCCC-----CCCCCcCcccccCccC
Q 047563           88 SGQI----PAQLIELNFLSNFNVSYNNLSGLIPDK-----GQYSTFDETSYRGNLY  134 (222)
Q Consensus        88 ~~~~----p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~l~~l~~l~l~~n~~  134 (222)
                      ....    ...|...+.|..+.+..|.+.......     .+.+.|+.|++++|.+
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence            5322    223445567777777777664322211     4566777777777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.84  E-value=0.057  Score=38.31  Aligned_cols=83  Identities=18%  Similarity=0.256  Sum_probs=48.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .+.++|+.+.+.. .+.......|...++++.+.+..+ +.......|..+.+++.+.+.+ .+.......|..+++++.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            3456777887764 566566677888878888888775 5545556688887888888866 443244456667788888


Q ss_pred             eecccc
Q 047563          104 FNVSYN  109 (222)
Q Consensus       104 L~l~~N  109 (222)
                      +.+..+
T Consensus        86 i~~~~~   91 (129)
T PF13306_consen   86 IDIPSN   91 (129)
T ss_dssp             EEETTT
T ss_pred             cccCcc
Confidence            887654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.15  E-value=0.0037  Score=50.82  Aligned_cols=86  Identities=22%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L  104 (222)
                      +.+.+.|+.=+..++.+  .....|+.|+.|.|+-|.++..-|  +..++.|+.|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556666666665521  234567788888888888874444  446677888888888776321 1245577788888


Q ss_pred             ecccccCCCCC
Q 047563          105 NVSYNNLSGLI  115 (222)
Q Consensus       105 ~l~~N~l~~~~  115 (222)
                      -|..|+=.+.-
T Consensus        94 WL~ENPCc~~a  104 (388)
T KOG2123|consen   94 WLDENPCCGEA  104 (388)
T ss_pred             hhccCCccccc
Confidence            88877765543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.66  E-value=0.0022  Score=50.78  Aligned_cols=83  Identities=20%  Similarity=0.205  Sum_probs=47.5

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ...+.||++.|++- -+...|+-++.+..|+++.|.+. -.|..+..+..+..+++..|.++ ..|..+...+.++.+++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            45555666666554 33344555555556666666655 55555555555566666666655 55555666666666666


Q ss_pred             ccccCC
Q 047563          107 SYNNLS  112 (222)
Q Consensus       107 ~~N~l~  112 (222)
                      .+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            655543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.56  E-value=0.0012  Score=52.17  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=36.0

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS   88 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   88 (222)
                      ++.+..||++.|.+. ..|..+.++..+..+++..|..+ ..|.++..+++++.+++..|.+.
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            344555666666665 55555565555556666666655 56666666666666666666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.20  E-value=0.055  Score=24.44  Aligned_cols=13  Identities=62%  Similarity=0.902  Sum_probs=4.5

Q ss_pred             CCCeEEccCCcCC
Q 047563           76 MIESLDLSNNRLS   88 (222)
Q Consensus        76 ~L~~L~Ls~N~l~   88 (222)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.77  E-value=0.04  Score=44.89  Aligned_cols=87  Identities=22%  Similarity=0.369  Sum_probs=53.9

Q ss_pred             CCcccEEEeecCCCCCCCC----hhccCCcCCCeEEccCCcCC---CCcCc-------cCCCCCCCCeEEccCCcCCCcC
Q 047563           26 LNYMVGLDLSCNQLTGNVP----SEIGDLQKIRVLNLSHNCLS---GSIPR-------SFSNLKMIESLDLSNNRLSGQI   91 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~---~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~   91 (222)
                      +..++.++||+|.|...-.    ..+.+-.+|+..+++.-...   ..+++       .+-.+++|+..+||+|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            6788999999999884322    23444555666665543321   12222       2345677888888888877666


Q ss_pred             chhhh----cCcccCceecccccCC
Q 047563           92 PAQLI----ELNFLSNFNVSYNNLS  112 (222)
Q Consensus        92 p~~~~----~l~~L~~L~l~~N~l~  112 (222)
                      |..+.    .-+.|.+|.+++|.+.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC
Confidence            65433    4466778888777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.70  E-value=0.094  Score=26.29  Aligned_cols=15  Identities=47%  Similarity=0.516  Sum_probs=9.3

Q ss_pred             CcccEEEeecCCCCC
Q 047563           27 NYMVGLDLSCNQLTG   41 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~   41 (222)
                      ++|+.|+|++|.|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666663

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.70  E-value=0.094  Score=26.29  Aligned_cols=15  Identities=47%  Similarity=0.516  Sum_probs=9.3

Q ss_pred             CcccEEEeecCCCCC
Q 047563           27 NYMVGLDLSCNQLTG   41 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~   41 (222)
                      ++|+.|+|++|.|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            456666666666663

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.29  E-value=0.38  Score=41.70  Aligned_cols=93  Identities=18%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             CcccEEEeec-CCCCCCCChhccCCcCCCeEEccCC-cCCCCcCccCCCCCCCCeEEccCCcCC--CcCchhhhcC----
Q 047563           27 NYMVGLDLSC-NQLTGNVPSEIGDLQKIRVLNLSHN-CLSGSIPRSFSNLKMIESLDLSNNRLS--GQIPAQLIEL----   98 (222)
Q Consensus        27 ~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l----   98 (222)
                      .+|+.|.+++ +.++ .+|+.+  .++|+.|++++| .+. .+|.      +|+.|+++.+...  +.+|..+..+    
T Consensus        72 ~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~  141 (426)
T PRK15386         72 NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINS  141 (426)
T ss_pred             CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccc
Confidence            4688888876 5554 566554  257888888887 444 4443      3555555554421  1344333322    


Q ss_pred             --------------cccCceecccccCCCCCCCCCCCCCcCcccccC
Q 047563           99 --------------NFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRG  131 (222)
Q Consensus        99 --------------~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~  131 (222)
                                    ++|+.|++++|.....++.  ...+|+.|.+..
T Consensus       142 ~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~--LP~SLk~L~ls~  186 (426)
T PRK15386        142 YNPENQARIDNLISPSLKTLSLTGCSNIILPEK--LPESLQSITLHI  186 (426)
T ss_pred             cccccccccccccCCcccEEEecCCCcccCccc--ccccCcEEEecc
Confidence                          3566677766654432221  123555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.77  E-value=0.17  Score=25.30  Aligned_cols=14  Identities=57%  Similarity=0.733  Sum_probs=8.3

Q ss_pred             CCCCeEEccCCcCC
Q 047563           75 KMIESLDLSNNRLS   88 (222)
Q Consensus        75 ~~L~~L~Ls~N~l~   88 (222)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.77  E-value=0.17  Score=25.30  Aligned_cols=14  Identities=57%  Similarity=0.733  Sum_probs=8.3

Q ss_pred             CCCCeEEccCCcCC
Q 047563           75 KMIESLDLSNNRLS   88 (222)
Q Consensus        75 ~~L~~L~Ls~N~l~   88 (222)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.70  E-value=0.26  Score=34.85  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .+++.|+.+++.++ +.......|...++++.+.+.. .+.......|....+|+.+.+..+ +.......|.++ .++.
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~  107 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE  107 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred             cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence            45778999999886 6656667788888899999976 444355567888999999999776 543444456665 7777


Q ss_pred             eeccc
Q 047563          104 FNVSY  108 (222)
Q Consensus       104 L~l~~  108 (222)
                      +.+..
T Consensus       108 i~~~~  112 (129)
T PF13306_consen  108 INIPS  112 (129)
T ss_dssp             EE-TT
T ss_pred             EEECC
Confidence            77654

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=88.99  E-value=0.23  Score=33.86  Aligned_cols=6  Identities=17%  Similarity=0.628  Sum_probs=2.3

Q ss_pred             HHhhhh
Q 047563          189 ILWINS  194 (222)
Q Consensus       189 ~~~~~~  194 (222)
                      ++|+++
T Consensus        87 ~w~f~~   92 (96)
T PTZ00382         87 CWWFVC   92 (96)
T ss_pred             hheeEE
Confidence            333333

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=88.85  E-value=0.14  Score=37.74  Aligned_cols=16  Identities=13%  Similarity=-0.215  Sum_probs=7.8

Q ss_pred             hheeeeeeeehhhhhH
Q 047563          171 LYWSFGASYVTVILGL  186 (222)
Q Consensus       171 ~~~~~~~~~~~~~~~v  186 (222)
                      +++++++++++.++++
T Consensus        50 IVIGvVVGVGg~ill~   65 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLG   65 (154)
T ss_pred             EEEEEEecccHHHHHH
Confidence            4455555554444433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.72  E-value=0.74  Score=37.76  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             CCCcccEEEeecCCCCCCCChh----ccCCcCCCeEEccCCcCCCCcCccC-------------CCCCCCCeEEccCCcC
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSE----IGDLQKIRVLNLSHNCLSGSIPRSF-------------SNLKMIESLDLSNNRL   87 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~Ls~N~l   87 (222)
                      .++.|+..+||.|.+....|+.    ++.-..|..|.+++|.+....-..+             .+-+.|+......|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            5688899999999988776654    4456778888888887641111111             2346778888888887


Q ss_pred             CCcCchh-----hhcCcccCceecccccCCCCCCC------CCCCCCcCcccccCccC
Q 047563           88 SGQIPAQ-----LIELNFLSNFNVSYNNLSGLIPD------KGQYSTFDETSYRGNLY  134 (222)
Q Consensus        88 ~~~~p~~-----~~~l~~L~~L~l~~N~l~~~~p~------~~~l~~l~~l~l~~n~~  134 (222)
                      . ..|..     +..-..|+.+.+..|.+....-.      .....+|..|+++.|-+
T Consensus       170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            5 22221     11123556666666655422100      13356667777776655

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=86.47  E-value=0.66  Score=36.18  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=16.3

Q ss_pred             hhhhHhheeeeeeeehhhhhHHHHHhhh
Q 047563          166 IDMVSLYWSFGASYVTVILGLLAILWIN  193 (222)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~  193 (222)
                      .....+++++++|++.++++|++++++|
T Consensus        34 ~d~~~I~iaiVAG~~tVILVI~i~v~vR   61 (221)
T PF08374_consen   34 KDYVKIMIAIVAGIMTVILVIFIVVLVR   61 (221)
T ss_pred             ccceeeeeeeecchhhhHHHHHHHHHHH
Confidence            3344556666666666666665555555

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=85.40  E-value=0.36  Score=39.94  Aligned_cols=25  Identities=12%  Similarity=0.154  Sum_probs=10.8

Q ss_pred             ehhhhhHHHHHhhhhhhhhhhHHhH
Q 047563          180 VTVILGLLAILWINSFWRKRWFYFI  204 (222)
Q Consensus       180 ~~~~~~v~~~~~~~~~~r~~~~~~~  204 (222)
                      +++++++++.+++|+||+++.-+.+
T Consensus       267 iIVLIMvIIYLILRYRRKKKmkKKl  291 (299)
T PF02009_consen  267 IIVLIMVIIYLILRYRRKKKMKKKL  291 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3333444444444444444444433

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.75  E-value=0.034  Score=45.86  Aligned_cols=86  Identities=21%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             cccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCc-CCCc-CchhhhcCcccCce
Q 047563           28 YMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR-LSGQ-IPAQLIELNFLSNF  104 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L  104 (222)
                      .|+.+|||+..|+.. +...+++..+|+.|.+.++.+...+-..+..-.+|..|+++... ++.. ..-.+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            577788888777732 22345566677777777777765555556666677777776543 2211 11124456666677


Q ss_pred             ecccccCCC
Q 047563          105 NVSYNNLSG  113 (222)
Q Consensus       105 ~l~~N~l~~  113 (222)
                      +++-+.+..
T Consensus       266 NlsWc~l~~  274 (419)
T KOG2120|consen  266 NLSWCFLFT  274 (419)
T ss_pred             CchHhhccc
Confidence            666665543

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=84.05  E-value=0.29  Score=34.92  Aligned_cols=13  Identities=31%  Similarity=0.294  Sum_probs=5.1

Q ss_pred             HHHHhhhhhhhhh
Q 047563          187 LAILWINSFWRKR  199 (222)
Q Consensus       187 ~~~~~~~~~~r~~  199 (222)
                      +++.|+++|+|+|
T Consensus        82 lli~y~irR~~Kk   94 (122)
T PF01102_consen   82 LLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHS--
T ss_pred             HHHHHHHHHHhcc
Confidence            3444444545444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.97  E-value=0.2  Score=24.56  Aligned_cols=14  Identities=50%  Similarity=0.795  Sum_probs=6.2

Q ss_pred             CCCCeEEccCCcCC
Q 047563           75 KMIESLDLSNNRLS   88 (222)
Q Consensus        75 ~~L~~L~Ls~N~l~   88 (222)
                      ++|+.|++++|+++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555544

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.32  E-value=1.2  Score=22.57  Aligned_cols=14  Identities=36%  Similarity=0.475  Sum_probs=8.6

Q ss_pred             CcccEEEeecCCCC
Q 047563           27 NYMVGLDLSCNQLT   40 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~   40 (222)
                      ++|+.|+|+.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666665

>PTZ00370 STEVOR; Provisional

Probab=81.30  E-value=0.41  Score=39.00  Aligned_cols=19  Identities=11%  Similarity=0.559  Sum_probs=10.3

Q ss_pred             hhhHHHHHhhhhhhhhhhH
Q 047563          183 ILGLLAILWINSFWRKRWF  201 (222)
Q Consensus       183 ~~~v~~~~~~~~~~r~~~~  201 (222)
                      ++++++.+|.+|||+.-|.
T Consensus       269 vvliilYiwlyrrRK~swk  287 (296)
T PTZ00370        269 VVLIILYIWLYRRRKNSWK  287 (296)
T ss_pred             HHHHHHHHHHHHhhcchhH
Confidence            3444555666666655554

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=81.11  E-value=0.39  Score=39.02  Aligned_cols=18  Identities=17%  Similarity=0.695  Sum_probs=9.7

Q ss_pred             hhhHHHHHhhhhhhhhhh
Q 047563          183 ILGLLAILWINSFWRKRW  200 (222)
Q Consensus       183 ~~~v~~~~~~~~~~r~~~  200 (222)
                      ++++++.+|.+|||+.-|
T Consensus       273 vvliiLYiWlyrrRK~sw  290 (295)
T TIGR01478       273 VVLIILYIWLYRRRKKSW  290 (295)
T ss_pred             HHHHHHHHHHHHhhcccc
Confidence            344455566666555544

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-11
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%)
Query: 29  MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           M+ LD+S N L+G +P EIG +  + +LNL HN +SGSIP    +L+ +  LDLS+N+L 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 89  GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
           G+IP  +  L  L+  ++S NNLSG IP+ GQ+ TF    +  N
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 67/104 (64%)
Query: 29  MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           M+ LD+S N L+G +P EIG +  + +LNL HN +SGSIP    +L+ +  LDLS+N+L 
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 89  GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
           G+IP  +  L  L+  ++S NNLSG IP+ GQ+ TF    +  N
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 734

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 47/156 (30%)
Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKI-RVLNLSHNCLSGSIPRSFSNL-------- 74
           S+L  +VG+    N+++G +P   G   K+   + +S N L+G IP +F+NL        
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 75  --------------------------------------KMIESLDLSNNRLSGQIPAQLI 96
                                                 K +  LDL NNR+ G +P  L 
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 97  ELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
           +L FL + NVS+NNL G IP  G    FD ++Y  N
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           N++ +  LD+S N L  +         + I VLNLS N L+GS+ R       ++ LDL 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH 458
Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           NNR+   IP  +  L  L   NV+ N L   +PD
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  172 bits (437), Expect = 8e-50
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            N   M+ LD+S N L+G +P EIG +  + +LNL HN +SGSIP    +L+ +  LDLS
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC-PTINK 142
           +N+L G+IP  +  L  L+  ++S NNLSG IP+ GQ+ TF    +  N  L C   + +
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL-CGYPLPR 747

Query: 143 SCNSAEEKPAIKSKGREDE 161
              S  +  A   +     
Sbjct: 748 CDPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 3e-27
 Identities = 39/94 (41%), Positives = 56/94 (59%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           SN + +V L LS N L+G +PS +G L K+R L L  N L G IP+    +K +E+L L 
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            N L+G+IP+ L     L+  ++S N L+G IP 
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 1e-25
 Identities = 34/94 (36%), Positives = 51/94 (54%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +L+ +  L L  N L G +P E+  ++ +  L L  N L+G IP   SN   +  + LS
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           NNRL+G+IP  +  L  L+   +S N+ SG IP 
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 1e-25
 Identities = 32/94 (34%), Positives = 51/94 (54%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +  N +  L L  N  TG +P  + +  ++  L+LS N LSG+IP S  +L  +  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            N L G+IP +L+ +  L    + +N+L+G IP 
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 1e-24
 Identities = 32/93 (34%), Positives = 51/93 (54%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             +  +  L L  N LTG +PS + +   +  ++LS+N L+G IP+    L+ +  L LS
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN  SG IPA+L +   L   +++ N  +G IP
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 99.6 bits (249), Expect = 2e-24
 Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 2/96 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
             L  +  L L+ N+ TG +P  + G    +  L+LS N   G++P  F +  ++ESL L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 83  SNNRLSGQIPAQLI-ELNFLSNFNVSYNNLSGLIPD 117
           S+N  SG++P   + ++  L   ++S+N  SG +P+
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 99.2 bits (248), Expect = 3e-24
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           SN   +  + LS N+LTG +P  IG L+ + +L LS+N  SG+IP    + + +  LDL+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
            N  +G IPA + + +      ++ N ++G      +     +  +     L 
Sbjct: 547 TNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.4 bits (246), Expect = 5e-24
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLD 81
               + + GLDLS N   G VP   G    +  L LS N  SG +P  +   ++ ++ LD
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 82  LSNNRLSGQIPAQLIELNF-LSNFNVSYNNLSGLIPD 117
           LS N  SG++P  L  L+  L   ++S NN SG I  
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S    +  LD+S N  +  +P  +GD   ++ L++S N LSG   R+ S    ++ L++S
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +N+  G IP     L  L   +++ N  +G IPD
Sbjct: 256 SNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.8 bits (234), Expect = 2e-22
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSE-IGDLQKIRVLNLSHNCLSGSIPRSFSNLKM-IESLD 81
            + + +  L LS N  +G +P + +  ++ ++VL+LS N  SG +P S +NL   + +LD
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 82  LSNNRLSGQIPAQLIE--LNFLSNFNVSYNNLSGLIPD 117
           LS+N  SG I   L +   N L    +  N  +G IP 
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPSEI---GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
           G  LN +  LDLS N ++G             +++ L +S N +SG +    S    +E 
Sbjct: 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEF 204

Query: 80  LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           LD+S+N  S  IP  L + + L + ++S N LSG    
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 9/104 (8%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPS--EIGDLQKIRVLNLSHNCLSGSIPRS-FSNLK 75
                ++L     LDLS N L+G V +   +G    ++ LN+S N L      S    L 
Sbjct: 95  GFKCSASLTS---LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 76  MIESLDLSNNRLSGQIPAQLIELNFLSN---FNVSYNNLSGLIP 116
            +E LDLS N +SG      +  +         +S N +SG + 
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.7 bits (213), Expect = 1e-19
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP--RSFSNLKMIESLD 81
            +L  +  L LS + + G+V         +  L+LS N LSG +    S  +   ++ L+
Sbjct: 74  LSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 82  LSNNRLSGQIPAQ-LIELNFLSNFNVSYNNLSGLIPD 117
           +S+N L         ++LN L   ++S N++SG    
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC--LSGSIPRSFSNLKMIESLDLSNNRLSG 89
             ++ N + G     I +    +  + + N     G      + L      ++++    G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 90  QIPAQLIELNFLSNFNVSYNNLSGLIPD 117
                      +   ++SYN LSG IP 
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 8e-18
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 30  VGLDLSCNQLT---GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
             +DLS   L      V S +  L  +  L LS++ ++GS+   F     + SLDLS N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 87  LSGQIPA--QLIELNFLSNFNVSYNNLSGLIP 116
           LSG +     L   + L   NVS N L     
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 49  DLQKIRVLNLSHNCLS---GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN 105
              K+  ++LS   L+    ++  S  +L  +ESL LSN+ ++G +         L++ +
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 106 VSYNNLSGLIPDKGQ 120
           +S N+LSG +     
Sbjct: 107 LSRNSLSGPVTTLTS 121

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 79  SLDLSNNRLS---GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS 122
           S+DLS+  L+     + + L+ L  L +  +S ++++G +      +
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA 100

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (334), Expect = 1e-37
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NLN +  +DLS N L G+     G  +  + ++L+ N L+  +       K +  LDL 
Sbjct: 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
           NNR+ G +P  L +L FL + NVS+NNL G IP  G    FD ++Y  N  L 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (268), Expect = 5e-28
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 24  SNLNYMVGLDLS-CNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           +NL Y+  L +   N L G +P  I  L ++  L ++H  +SG+IP   S +K + +LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           S N LSG +P  +  L  L       N +SG IPD
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (266), Expect = 1e-27
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
            +   + L+Y   L ++   ++G +P  +  ++ +  L+ S+N LSG++P S S+L  + 
Sbjct: 96  AIAKLTQLHY---LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNF-NVSYNNLSGLIPD 117
            +    NR+SG IP      + L     +S N L+G IP 
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  103 bits (259), Expect = 1e-26
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQK-IRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           S+L  +VG+    N+++G +P   G   K    + +S N L+G IP +F+NL +   +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDL 204

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 120
           S N L G               +++ N+L+  +   G 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.3 bits (238), Expect = 1e-23
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 3/98 (3%)

Query: 22  NGSNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIE 78
             +    +  LDLS   L     +PS + +L  +  L +   N L G IP + + L  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            L +++  +SG IP  L ++  L   + SYN LSG +P
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 7e-17
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 31  GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS--IPRSFSNLKMIESLDLSN-NRL 87
             D       G +        ++  L+LS   L     IP S +NL  +  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 88  SGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            G IP  + +L  L    +++ N+SG IPD
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L  +  LDLS  QL    P+    L  ++VLN+SHN         +  L  ++ LD S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 84  NNRLSGQIPAQLIEL-NFLSNFNVSYNNLSGLIP 116
            N +      +L    + L+  N++ N+ +    
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 2e-19
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           + L+ +  L ++ N    N   +I  +L+ +  L+LS   L    P +F++L  ++ L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           S+N            LN L   + S N++      
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 1e-18
 Identities = 19/86 (22%), Positives = 33/86 (38%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS N L            +++VL+LS   +      ++ +L  + +L L+ N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
                 L+ L        NL+ L   
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 18/95 (18%), Positives = 34/95 (35%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +   +  LDLS  ++          L  +  L L+ N +      +FS L  ++ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 118
              L+      +  L  L   NV++N +      +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +L+++  L L+ N +          L  ++ L      L+        +LK ++ L+++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 84  NNRL-SGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +N + S ++P     L  L + ++S N +  +   
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
             L  +  LD   + L       +   L+ +  L++SH     +    F+ L  +E L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 83  SNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           + N         +   L  L+  ++S   L  L P 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 32  LDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG 89
           LDLS N L+  G           ++ L+LS N +   +  +F  L+ +E LD  ++ L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 90  QIPAQLI-ELNFLSNFNVSYNNLSGLIPD 117
                +   L  L   ++S+ +       
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 24  SNLNYMVGLDLSCNQLTG-NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK----MIE 78
            +L  +  L+++ N +    +P    +L  +  L+LS N +          L     +  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           SLDLS N ++   P    E+  L    +  N  S  +  
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNL-KMIESLDL 82
           ++L+ +  L++S N            L  ++VL+ S N +  S  +   +    +  L+L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 83  SNNRLSGQIPAQ--LIELNFLSNFNVSYNNLSGLIP 116
           + N  +     Q  L  +       V    +    P
Sbjct: 551 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           + S       L+L   +       ++  L+      L+     G    S  +L  +E LD
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFLD 353

Query: 82  LSNNRLS--GQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           LS N LS  G           L   ++S+N +  +  +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 19  ELYNGSNLNYM-VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKM 76
           +L     +  + + LDLS N +    P    ++ ++  L L +N  S ++ +     L  
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 77  IESLDLSNNRLSGQIPAQLIELNF---LSNFNVSYNNLSGL 114
           +E   L       +   +  + +    L N  +    L+ L
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 11/101 (10%), Positives = 23/101 (22%), Gaps = 5/101 (4%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS---IPRSFSNLKM 76
           L        ++G   +   L     S +  L  + +       L      I   F+ L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 77  IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           + S  L +  +               +  +           
Sbjct: 284 VSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 11  EFVTKNRYELYNGSNLNYMVGLDLSCNQLT------GNVPSEIGDLQKIRVLNLSHNCLS 64
           EF  +   E ++ S L  +  L +   +L        ++      L  +   +L    + 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 65  GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI 115
                 FS     + L+L N +       +L  L  L+  +    N    +
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 18/86 (20%), Positives = 37/86 (43%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L+L+ NQL     +      ++  L++  N +S   P     L M++ L+L +N LS   
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
                    L+  ++  N++  +  +
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNN 115

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.5 bits (207), Expect = 7e-19
 Identities = 22/94 (23%), Positives = 41/94 (43%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +  + +  LD+  N ++   P     L  ++VLNL HN LS    ++F+    +  L L 
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +N +        ++   L   ++S+N LS     
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 3e-18
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L+++  L+L  N           DL ++++++L  N L+      F+N   ++SL+L 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 84  NNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIP 116
            N ++             L+  ++ +N       
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +    +  L L  N +     +     + +  L+LSHN LS +   +   L+ ++ L LS
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153

Query: 84  NNRLSGQIPAQLIELNF--LSNFNVSYNNLSGLIPD 117
           NN++      +L       L    +S N +    P 
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           S L ++  LDL  N++   +   E   L+ I  + LS+N        SF+ +  ++ L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 83  SNNRLSG--QIPAQLIELNFLSNFNVSYNNLSGLIPD 117
               L      P+    L  L+  ++S NN++ +  D
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 22/94 (23%), Positives = 37/94 (39%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L+L  N+L+            +  L+L  N +       F   K + +LDLS
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +N LS       ++L  L    +S N +  L  +
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 24  SNLNYMVGLDLSCNQLT--------GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
             L  +  LDL  N L         G     +  L  + +LNL  N         F +L 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 76  MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            ++ +DL  N L+    +       L + N+  N ++ +   
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG--SIPRSFSNLKMIESLD 81
             L  +  + LS N+      +    +  ++ L L    L    S P  F  L+ +  LD
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133
           LSNN ++      L  L  L   ++ +NNL+ L                 +L
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGD---LQKIRVLNLSHNCLSGSIPRSFSNLKM--IE 78
             +  + GL L+  QL  ++  ++        IR L+LS++ LS +   +F  LK   + 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            LDLS N L+         L  L  F + YNN+  L   
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.7 bits (179), Expect = 4e-15
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQ--KIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
             L  +  L LS N++      E+       ++ L LS N +    P  F  +  +  L 
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201

Query: 82  LSNNRLSGQIPAQL---IELNFLSNFNVSYNNLSGLIPD 117
           L+N +L   +  +L   +    + N ++S + LS     
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 32  LDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS- 88
           L L    L    + PS    L+ + +L+LS+N ++         L+ +E LDL +N L+ 
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 89  -------GQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
                  G     L  L+ L   N+  N    +  +
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 7e-15
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 2/97 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKM--IESLD 81
                ++ LDLS N L+         L+ ++ L LS+N +               ++ L+
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 118
           LS+N++    P     +  L    ++   L   + +K
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN------ 85
           LDLS N L          L ++    L +N +      S   L  +  L+L  +      
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 86  ---RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
               L          L  L + N+  N++ G+  +
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQ--KIRVLNLSHNCLSGSIPRSFSNLKM 76
           +L        +  L LS +QL+    +    L+   + +L+LS+N L+     SF+ L  
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 77  IESLDLSNNRLSGQIPA------QLIELNFLSNF---NVSYNNLSGLIP 116
           +E   L  N +             +  LN   +F   ++S  +L  +  
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIG----DLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
           + L  +  L LS +  +    +           + +LNL+ N +S     +FS L  +E 
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 80  LDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           LDL  N +  ++  Q    L  +    +SYN    L  +
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
            L    +        +S   L          L+ +  LN+  N + G     F+ L  ++
Sbjct: 300 YLNLKRSFTK---QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 79  SLDLSNNRLSGQIPAQLI----ELNFLSNFNVSYNNLSGLIPD 117
            L LSN+  S +            + L   N++ N +S +  D
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSI---------PRSFSNL 74
           + L  +    L  N +       +  L  +R LNL  +    SI           SF  L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

Query: 75  KMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLY 134
           K +E L++ +N + G        L  L   ++S +  S        + +   +     L 
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH-ILN 387

Query: 135 LS 136
           L+
Sbjct: 388 LT 389

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFS-NLKMIESLDL 82
            +L  +  +DL  N L     S   +   ++ LNL  N ++    + F    + +  LD+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI 115
             N       +    +N+++  + +   LS   
Sbjct: 617 RFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 54  RVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
            V + SH  L+  +P    +N+     L+L++N+L     A     + L++ +V +N +S
Sbjct: 7   EVADCSHLKLT-QVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 113 GLIPD 117
            L P+
Sbjct: 63  KLEPE 67

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-------SIPRSF 71
             + G N++    ++LS NQ++            +  +NL  N L+            +F
Sbjct: 428 TPFKGINVSS---INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 72  SNLKMIESLDLSNNRLSGQIPAQLIELNF--LSNFNVSYNNLSGLIPDKGQYSTFDETSY 129
            N  ++ S+DL  N+L+  +           L   ++SYN+ S         ST      
Sbjct: 485 KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543

Query: 130 RGNLYLS 136
           R      
Sbjct: 544 RNQRDAQ 550

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSH------NCLSGSIPRSFSNLKMI 77
           + L Y+VG+DLS N  +   P++  +   ++   + +      N      P   +    +
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 78  ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
             L + +N +   +  ++     +S  ++  N    +   
Sbjct: 569 TQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 19/108 (17%), Positives = 49/108 (45%), Gaps = 13/108 (12%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLT--------GNVPSEIGDLQKIRVLNLSHNCL-SGSIPR 69
            L     +     ++++CN+              ++    +KI+++ + +N L +  +  
Sbjct: 268 FLKALPEMQL---INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 70  SFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           S   +K +  L+   N+L G++PA       L++ N++YN ++ +  +
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 17/110 (15%)

Query: 23  GSNLNYMVGLDLSCNQLTG-------NVPSEIGDLQKIRVLNLSHNCLSGSIPRSF--SN 73
            S  + +  ++L  N LT        +      +   +  ++L  N L+  +   F  + 
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511

Query: 74  LKMIESLDLSNNRLSGQIPA------QLIELNFLSNFNVSYNNLSGLIPD 117
           L  +  +DLS N  S   P        L      +  +   N      P+
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 4e-17
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 24  SNLNYMVGLDLSCNQLTG-------NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKM 76
            +++ M  +D S N++          +         +  +NLS+N +S      FS    
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 77  IESLDLSNNRLSG-------QIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           + S++L  N L+                   L++ ++ +N L+ L  D
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             +  +  L+   NQL G      G   K+  LNL++N ++          + +E+L  +
Sbjct: 327 QKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 84  NNRLSGQIPA--QLIELNFLSNFNVSYNNLSGLIPD 117
           +N+L   IP       ++ +S  + SYN +  +   
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 6/99 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG----SIPRSFSNLKMIES 79
           ++   + GL L     +G VP  IG L ++ VL L  +          P+  S     E 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 80  LDLSNNRLSGQIPAQLIELNF--LSNFNVSYNNLSGLIP 116
                              +F  L    ++ +     I 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 6e-15
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 20/121 (16%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-------------------SIPRSFS 72
           +    N +T  V   +  L K+R   + ++                       +    + 
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 73  NLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
           NLK +  +++ N     ++P  L  L  +   NV+ N        K  +    +      
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 133 L 133
           +
Sbjct: 307 I 307

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPS-EIGDLQKIRVLNLSHNCLSG-------SIPRSFSNL 74
                 +  L  + N+L       +   +  +  ++ S+N +          +  +    
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 75  KMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 120
             + S++LSNN++S          + LS+ N+  N L+ +  +  +
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
            D   N+     P  I     +  L +  N +   +         I  LD+ +N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISID 603

Query: 92  PAQLIELNFLSNFNVSYNNLS 112
            + +        + + Y+   
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 8/91 (8%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL---- 87
            +    Q       +  +L+ +  + + +      +P     L  ++ ++++ NR     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 88  ----SGQIPAQLIELNFLSNFNVSYNNLSGL 114
                 Q  A       +    + YNNL   
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           G+N N+   LD+   Q        +    ++  L+L     SG +P +   L  +E L L
Sbjct: 57  GANWNFNKELDMWGAQP----GVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 83  SNNRLSGQ----IPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 124
            ++          P  +              +      D      F
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 6e-12
 Identities = 8/97 (8%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           + + ++   ++ +    ++        K   +    N ++  + ++   L  +    + N
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGN 215

Query: 85  NRLSGQIPAQLIEL------NFLSNFNVSYNNLSGLI 115
           +    +   +  E             ++ ++NL  L 
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 3/95 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQ--KIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           S                              +    ++ +    SI +S         + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
             +N ++  +   ++ L  L  F +  +       
Sbjct: 190 QLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 9/97 (9%), Positives = 21/97 (21%), Gaps = 6/97 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKM--I 77
             L  +  L L  +    N     P  I                  +            +
Sbjct: 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161

Query: 78  ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
               ++++     I          +      NN++ +
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 3/65 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +    +  L +  N +   V  +I     I VL++  N                    L 
Sbjct: 563 TLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

Query: 84  NNRLS 88
            ++  
Sbjct: 620 YDKTQ 624

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 3e-16
 Identities = 14/97 (14%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSH------NCLSGSIPRSFSNLKMI 77
           + L Y+  +D+S N  +   P++  +  +++   + H      N +    P   +    +
Sbjct: 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 78  ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
             L + +N +   +  +L     L   +++ N    +
Sbjct: 809 IQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 13/128 (10%)

Query: 18  YELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-------GSIPRS 70
            + Y G N +    + LS N++             I  + LS+N ++            +
Sbjct: 667 MDDYKGINAST---VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 71  FSNLKMIESLDLSNNRLSGQIPAQLIELNF--LSNFNVSYNNLSGLIPDKGQYSTFDETS 128
           + N  ++ ++DL  N+L+  +           LSN +VSYN  S         S      
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782

Query: 129 YRGNLYLS 136
            R      
Sbjct: 783 IRHQRDAE 790

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-- 89
            +    +   N      +L+ +  + L +      +P    +L  ++SL+++ NR     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 90  -------QIPAQLIELNFLSNFNVSYNNLSGLIPDKG 119
                  ++         +  F + YNNL        
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 17/109 (15%)

Query: 24  SNLNYMVGLDLSCNQLT-------GNVPSEIGDLQKIRVLNLSHNCLSGSIPRS--FSNL 74
           +  + +  + LS N +T               +   +  ++L  N L+ S+      + L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752

Query: 75  KMIESLDLSNNRLSGQIPA------QLIELNFLSNFNVSYNNLSGLIPD 117
             + ++D+S N  S   P       QL         +   N +    P 
Sbjct: 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-------------------SIPRSFS 72
           +    N++T  +   I  L K++++  +++  +                    +   S+S
Sbjct: 430 IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 73  NLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
           NLK +  ++L N     Q+P  L +L  L + N++ N        K  ++   +    G 
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 133 ----LYLS 136
                Y+ 
Sbjct: 549 KIQIFYMG 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDL 82
             +  +  LD   N++        G   K+  L L +N +   IP    +    +E L  
Sbjct: 570 QKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626

Query: 83  SNNRLSGQIP--AQLIELNFLSNFNVSYNNLSGLIPD 117
           S+N+L   IP       +  + + + SYN +     +
Sbjct: 627 SHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPS-----EIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
            ++  M  +D S N++     +     +         + LS+N +       F+    I 
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 79  SLDLSNNRLS-------GQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           ++ LSNN ++                   L+  ++ +N L+ L  D
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 24  SNLNYMVGLDLSCNQLTG---------NVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSN 73
            +L  +  L+++CN+             +  +     KI++  + +N L       S   
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 74  LKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYST 123
           +  +  LD  +N++   + A       L++  + YN +  +  D   ++ 
Sbjct: 572 MVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPS-EIGDLQKIRVLNLSHNCLSGSIPRSFS-----NLKM 76
            +  + + GL  S N+L           +  +  ++ S+N +                  
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 77  IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
             ++ LS N +           + +S   +S N ++ +  +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPR--SFSNLKMIESL 80
                +  L L  NQ+   +P +      ++  L  SHN L   IP   +  ++ ++ S+
Sbjct: 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649

Query: 81  DLSNNRLSGQIPAQLIELNF-----LSNFNVSYNNLSGLIPD 117
           D S N++  +       ++       S   +SYN +     +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 4/97 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            N   + GL L+     G VP  IG L +++VL+   +  + S           +  +  
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 84  NNRLSGQIP----AQLIELNFLSNFNVSYNNLSGLIP 116
            +R+              LN       + N    + P
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 14/131 (10%), Positives = 40/131 (30%), Gaps = 11/131 (8%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           +  N N+   LD+  +Q       ++ +  ++  L+L+     G +P +   L  ++ L 
Sbjct: 298 HSLNWNFNKELDMWGDQP----GVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS 353

Query: 82  LSNNRLSGQIPA-------QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLY 134
              +  +              +         + Y  +      +   S   + +   N  
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413

Query: 135 LSCPTINKSCN 145
           +     +   +
Sbjct: 414 MKPIKKDSRIS 424

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 6e-10
 Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 13/101 (12%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG------SIPRSFSNLKM 76
                 +   DL  + +  N   E+  ++K   ++L    +         I ++   L  
Sbjct: 392 LDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449

Query: 77  IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           ++ +  +N+  +              + N  Y         
Sbjct: 450 LQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEEL 485

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
            D   N++    P+ I     +  L +  N +   +         +  LD+++N      
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISID 843

Query: 92  PAQLIELNFLSNFNVSYNNLS 112
              +        + + Y+   
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 7/65 (10%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +    ++ L +  N +   V  ++    ++ +L+++ N        S           L 
Sbjct: 803 TTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

Query: 84  NNRLS 88
            ++  
Sbjct: 860 YDKTQ 864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 15/86 (17%), Positives = 30/86 (34%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L+ S N L     +    L  +  L+L+   +      +F +   +++L L+ N L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
              L     L +       +S +   
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 8e-16
 Identities = 18/94 (19%), Positives = 33/94 (35%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S L  +  LDL+  Q+            ++  L L+ N L      + S  K ++ L   
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
              +S      L     L +  +  N++S +   
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
            G     +  ++L  +       +       ++ L+L+   LS  +P     L  ++ L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           LS N+              L++ ++  N     +  
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S    +  L      ++      + + + +  L L  N +S          + ++ LD  
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 84  NNRLSGQIPAQLIELNFLSN--FNVSYNNLSGLIPDKGQYSTFDETSYRGN 132
           NN +       +  L   +N   N++ N+++G+ P     + F   ++ G 
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 32  LDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           LDL+  +L      S   +L  ++VLNLSH+ L  S  + F  L  ++ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 91  IPAQLIELNFLSN---FNVSYNNLSGLIPD 117
              +   L  L       +S+ +LS +   
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 9e-14
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 32  LDLSCNQLTGNVPSEIG---DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           L+L  N        +      L ++ +L LS   LS     +F++LKM+  +DLS+NRL+
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 89  GQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
                 L  L  +   N++ N++S ++P 
Sbjct: 514 SSSIEALSHLKGIY-LNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 17/94 (18%), Positives = 34/94 (36%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            + + +  L L+ N L     + +   + ++ L      +S        N K +ESL L 
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG 137

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +N +S     +      L   +   N +  L  +
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
              + +  LDL+   L+  +PS +  L  ++ L LS N        S SN   +  L + 
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333

Query: 84  NNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPDKGQ 120
            N    ++    +E L  L   ++S++++        Q
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
           L     L     L LS   L+         L+ +  ++LSHN L+ S   + S+LK I  
Sbjct: 472 LQTLGRLEI---LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY- 527

Query: 80  LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 113
           L+L++N +S  +P+ L  L+     N+  N L  
Sbjct: 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 24  SNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
            NL  +  LDLS + +        ++ +L  ++ LNLS+N        +F     +E LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 82  LSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           L+  RL  +      + L+ L   N+S++ L      
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 23  GSNLNYMVGLDLSCNQLTGNVPSEIGDLQK--IRVLNLSHNCLSGSIPRSFSNLKMIESL 80
            S +  +              P+    L +  +  +NL  +        +F     ++ L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           DL+   LS ++P+ L+ L+ L    +S N    L   
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE--SLD 81
            N   +  L L  N ++     +    +K++VL+  +N +        S+L+     SL+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTIN 141
           L+ N ++G I     +     + N        +I    + ST           +    I+
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 142 KSC 144
            + 
Sbjct: 245 PAV 247

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 5/90 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR--SFSNLKMIESLDLSNNRLSG 89
           L+L+ N + G +     D    + LN         I +    S ++ +      +     
Sbjct: 184 LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 90  QIPAQLIELNFLS--NFNVSYNNLSGLIPD 117
             PA    L  +S  + N+  +    +  +
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSN 272

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 23/95 (24%), Positives = 39/95 (41%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           SN + +  LDLS  ++          L  +  L L+ N +    P SFS L  +E+L   
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 118
             +L+      + +L  L   NV++N +       
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 18/86 (20%), Positives = 33/86 (38%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +DLS N L         +  +++ L+LS   +     +++  L  + +L L+ N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
           P     L  L N       L+ L   
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESF 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L ++ N    N  S +  +   +  L+LS   L       F  L  ++ L++S+N L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 91  IPAQLIELNFLSNFNVSYNNLSGLIPD 117
             +   +L  LS  + S+N +      
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS  QL          L ++++LN+SHN L       ++ L  + +LD S NR+    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 92  PAQLIELNFLSNFNVSYNNLS 112
                    L+ FN++ N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
             L  +  LD   + L      S    L+K+  L++S+          F  L  + +L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455

Query: 83  SNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           + N       + +      L+  ++S   L  +   
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSGQ 90
           L     +L       IG L  ++ LN++HN +    +P  FSNL  +  +DLS N +   
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 91  IPAQLIELNFLSNF----NVSYNNLSGLIPD 117
               L  L          ++S N +  +   
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 16  NRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
            + + +   +L ++  L L+ N+ +  +  +   L  +  L+LS N LS S   S+S+L 
Sbjct: 317 CQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 76  M--IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
              +  LDLS N     + A  + L  L + +  ++ L  +  
Sbjct: 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 20  LYNGSNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMI 77
            +    L  +  LDLS N L+  G           +R L+LS N     +  +F  L+ +
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 78  ESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           + LD  ++ L           L  L   ++SY N       
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIR----VLNLSHNCLSGSIPRSFSNLKMIES 79
           SNL  +V +DLS N +     +++  L++       L++S N +     ++F  +K +  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHE 208

Query: 80  LDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
           L L  N  S  I    ++ L  L    +                 F+ +   G   ++  
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----NLEIFEPSIMEGLCDVTID 264

Query: 139 TINKSCNS 146
               +  +
Sbjct: 265 EFRLTYTN 272

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 5/85 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
             L+      +   +   L  +  ++L+   +              +SL +   +L    
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFP 323

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
              L  L  L    ++ N  S    
Sbjct: 324 TLDLPFLKSL---TLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 9/100 (9%)

Query: 32  LDLSCNQLTGNVPSE-IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL--------DL 82
           L L  N  + N+    + +L  + V  L                 ++E L         L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS 122
           +          +   L  +S  +++  ++  L      + 
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 4/97 (4%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRV--LNLSHNCLSGSIPRSFSNLKMI 77
           L        ++G       L    PS +  L  + +    L++          F  L  +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 78  ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            ++ L+   +   +   + +     + ++    L   
Sbjct: 288 SAMSLAGVSIK-YLED-VPKHFKWQSLSIIRCQLKQF 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 7e-15
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L+L    L    P +   L  ++ + +    L   +P +      +E+L L+ N L   +
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNL---YLSC 137
           PA +  LN L   ++        +P+         E     NL    L  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 7e-13
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 16  NRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
           +         L  +  L L    +  ++P+ I +LQ ++ L + ++ LS ++  +  +L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 76  MIESLDLSNNRLSGQIPAQLIELNFLSNFNVS-YNNLSGL 114
            +E LDL         P        L    +   +NL  L
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 24  SNLNYMVGLDLS-CNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
            +L  +  LDL  C  L    P   G    ++ L L       ++P     L  +E LDL
Sbjct: 226 HHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
                  ++P+ + +L       V  +  + L  
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS- 83
            L+++  + +    L   +P  +     +  L L+ N L  ++P S ++L  +  L +  
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 84  NNRL--------SGQIPAQLIELNFLSNFNVSYNNLSGL 114
              L        S     +   L  L +  + +  +  L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NL  +  L +  + L+  +   I  L K+  L+L       + P  F     ++ L L 
Sbjct: 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 84  N-NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           + + L   +P  +  L  L   ++        +P 
Sbjct: 262 DCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMI------ 77
                +  L L+ N L   +P+ I  L ++R L++        +P   ++          
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 78  ---ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
              +SL L    +   +PA +  L  L +  +  + LS L
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 25  NLNYMVGLDLS-CNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
               +  L L  C+ L   +P +I  L ++  L+L        +P   + L     + + 
Sbjct: 251 GRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 84  NNRLSGQIPAQLIEL 98
            +  +     + +  
Sbjct: 310 PHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 26/106 (24%)

Query: 32  LDLS-CNQLTGNVPSEIGDLQ--------------------KIRVLNLSHNCLSGSIPRS 70
           L       L       +   Q                      ++   +   L  +    
Sbjct: 17  LYFQGSTALR-PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADL 74

Query: 71  FSNLKMI--ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
             +       +L+L +  L  Q P Q   L+ L +  +    L  L
Sbjct: 75  LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 6e-14
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L++  + LT  +P  +     I  L +  N L+ S+P     L+   +L++S N+L+  +
Sbjct: 45  LNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-SL 96

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P     L  LS F+    +L  L  
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPALPS 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L +S N+LT ++P    +L++   L +S N L+ S+P   S L    SL +  N+L+ ++
Sbjct: 226 LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 126
           P  LI L+  +  N+  N LS       +  T   
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L++S NQLT ++P     L ++ + +         +P   S L     L +  N+L+  +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLC---KLWIFGNQLT-SL 136

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P     L  L   +VS N L+ L
Sbjct: 137 PVLPPGLQEL---SVSDNQLASL 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L +S NQL  ++P+   +L K   L   +N L+ S+P   S LK    L +S NRL+  +
Sbjct: 186 LSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGNRLT-SL 236

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P    EL  L    VS N L+ L
Sbjct: 237 PVLPSELKEL---MVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 5e-10
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L +S NQL  ++P+   +L K   L   +N L+ S+P   S L+    L +S+N+L+  +
Sbjct: 146 LSVSDNQLA-SLPALPSELCK---LWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SL 196

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P    EL  L  +N    +L  L  
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPS 221

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 7e-10
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS--- 88
           L +S N+LT ++P     L     L++  N L+  +P S  +L    +++L  N LS   
Sbjct: 246 LMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300

Query: 89  GQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            Q   ++      S   + ++      P
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 1/74 (1%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L +  NQLT  +P  +  L     +NL  N LS    ++   +           R     
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 92  PAQLIELNFLSNFN 105
            +   E   L    
Sbjct: 325 ASAPRETRALHLAA 338

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           N N      ++ + L   + S       ++ L+LS N LS       +    +E L+LS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           N L  +    L  L+ L   +++ N +  L
Sbjct: 68  NVLY-ETLD-LESLSTLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 5e-13
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
           ++        +  LDLS N+L   +  E      +  ++L +N L   I ++    + +E
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
             DL  N                    V+   +  L     +  T     + G     
Sbjct: 241 HFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           ++ + +  L+L  N +  +V  ++    K++ L+LS N L+  +   F +   +  + L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
           NN+L   I   L     L +F++  N   
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
           EL  G ++     L  + N ++  V       Q  + + L++N ++            ++
Sbjct: 94  ELLVGPSIET---LHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 79  SLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
            LDL  N +     A+L    + L + N+ YN +  +   
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 15/70 (21%), Positives = 29/70 (41%)

Query: 47  IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 106
             +  + ++  ++ + L  ++     +   ++ LDLS N LS    A L     L   N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 107 SYNNLSGLIP 116
           S N L   + 
Sbjct: 66  SSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDL+ N +      E+     I  L+ ++N +S          K   ++ L+NN+++   
Sbjct: 85  LDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLR 136

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
                  + +   ++  N +  +
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTV 159

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 11/131 (8%), Positives = 43/131 (32%), Gaps = 10/131 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L    ++    +  E  +  + R ++         I +     +   +L+     L    
Sbjct: 318 LSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD--- 373

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEKP 151
             + +     ++  +       +   + Q++T +++  +    +    + +      E+ 
Sbjct: 374 --EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI----VKRYEEMYVEQQ 427

Query: 152 AIKSKGREDED 162
           ++++    D D
Sbjct: 428 SVQNNAIRDWD 438

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 7/52 (13%), Positives = 19/52 (36%)

Query: 66  SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +I     N    +   ++++ L   + +       +   ++S N LS +   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 1e-13
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           N N      ++ + L   + S       ++ L+LS N LS       +    +E L+LS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           N L  +    L  L+ L   +++ N +  L
Sbjct: 68  NVLY-ETLD-LESLSTLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
                  +  LDLS N+L   +  E      +  ++L +N L   I ++    + +E  D
Sbjct: 186 GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133
           L  N        +           V+   +  L     +  T     + G  
Sbjct: 244 LRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           ++ + +  L+L  N +  +V  ++    K++ L+LS N L+  +   F +   +  + L 
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
           NN+L   I   L     L +F++  N   
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
           EL  G ++     L  + N ++  V       Q  + + L++N ++            ++
Sbjct: 94  ELLVGPSIET---LHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 79  SLDLSNNRLSG-QIPAQLIELNFLSNFNVSYNNLSGL 114
            LDL  N +            + L + N+ YN +  +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 15/73 (20%), Positives = 29/73 (39%)

Query: 44  PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN 103
                +  + ++  ++ + L  ++     +   ++ LDLS N LS    A L     L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 104 FNVSYNNLSGLIP 116
            N+S N L   + 
Sbjct: 63  LNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
           +L + S L     LDL+ N +      E+     I  L+ ++N +S          K   
Sbjct: 75  DLESLSTLRT---LDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK--- 123

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           ++ L+NN+++          + +   ++  N +  +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 7/52 (13%), Positives = 19/52 (36%)

Query: 66  SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +I     N    +   ++++ L   + +       +   ++S N LS +   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NL+ +  L++  NQ++    + + DL K+++LN+  N +S       +NL  + SL L+
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN+L  +    +  L  L+   +S N+++ + P
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +L  +  L++  NQ++    S + +L ++  L L++N L          L  + +L LS
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
            N ++   P  L  L+ + + + +   + 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 7e-11
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            NL  +  L L+ + ++    S + +L K+  LNL  N     +    SN+  +  L ++
Sbjct: 107 QNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVT 163

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            +++    P  +  L  L + +++YN +  + P
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NL  +  L L+ NQ+     S +  L  +       N ++   P   +N+  + SL + 
Sbjct: 174 ANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           NN+++   P  L  L+ L+   +  N +S +
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI 258

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 8e-10
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L+L+ NQ+T    S + +L K+  L +  N ++     +  NL  +  L L+
Sbjct: 63  EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLN 118

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            + +S   P  L  L  + + N+  N+    + 
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L ++  ++       I  L  +  LNL+ N ++   P   SNL  + +L + 
Sbjct: 41  EELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIG 96

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            N+++    + L  L  L    ++ +N+S + P
Sbjct: 97  TNKIT--DISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
           +++  ++L   +   L    +T        +L+ I  L ++   ++ SI      L  +E
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQ-GIEYLTNLE 69

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            L+L+ N+++   P  L  L  L+N  +  N ++ +  
Sbjct: 70  YLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L      +  N      DL +     L    ++  +      L+ I  L ++  +++  I
Sbjct: 5   LATLPAPI--NQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SI 59

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
              +  L  L   N++ N ++ + P
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP 83

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNL----KMIESLDLSNNRL 87
           L +  NQLT  +P     L+    L++S N L  S+P          +         NR+
Sbjct: 165 LSVRNNQLTF-LPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 88  SGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
           +  IP  ++ L+      +  N LS  I +     T     +   +Y S  
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 1e-12
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L+   L+ ++P  +    +I VL ++ N L  S+P   ++L   E LD  +NRLS  +
Sbjct: 64  LQLNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TL 115

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P     L  L   +V  N L+ L
Sbjct: 116 PELPASLKHL---DVDNNQLTML 135

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LD   N+L+  +P     L+    L++ +N L+  +P   + L   E ++  NN+L+  +
Sbjct: 105 LDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL---EYINADNNQLT-ML 155

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P     L  L   +V  N L+ L
Sbjct: 156 PELPTSLEVL---SVRNNQLTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 60.0 bits (145), Expect = 9e-11
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
                +  LD+  NQLT  +P     L+    +N  +N L+  +P   ++L   E L + 
Sbjct: 117 ELPASLKHLDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVR 168

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           NN+L+  +P     L  L   +VS N L  L
Sbjct: 169 NNQLT-FLPELPESLEAL---DVSTNLLESL 195

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 6/106 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIR----VLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
           LD+S N L  ++P+                   N ++  IP +  +L    ++ L +N L
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242

Query: 88  SGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133
           S +I   L +     +++      S     +         +     
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 3/93 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +    +      N++T ++P  I  L     + L  N LS  I  S S           
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
               S     Q          +           
Sbjct: 263 RIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 24  SNLNYMVGLDLSCNQLTG---NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
            N N+ +  +   N ++G   +  S     +K  +   + N     +      +     L
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSEL 64

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            L+   LS  +P  L     ++   ++ N L  L
Sbjct: 65  QLNRLNLS-SLPDNL--PPQITVLEITQNALISL 95

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             +  +  L +S N+L   +      +  ++VL+LSHN L   + R+      +E+L L 
Sbjct: 269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
           +N +   +       + L N  +S+N+  
Sbjct: 327 HNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
            N   +V +DLS N+L   +       +Q++  L +S+N L  ++      +  ++ LDL
Sbjct: 245 LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           S+N L   +     + + L N  + +N++  L
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L  N LT    + + +   +  ++LS+N L   +   F  ++ +E L +SNNRL   +
Sbjct: 231 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
                 +  L   ++S+N+L  +
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 2   LTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSH 60
                 V ++  T++ Y  +    LN    +    + +   +P+ +    +++ +LNL+ 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 78

Query: 61  NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGL 114
             +      +F+    I+ L +  N +   +P  + + +  L+   +  N+LS L
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 132

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
            N+  +  L L  N L+ ++P  I  +  K+  L++S+N L      +F     +++L L
Sbjct: 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           S+NRL+  +   L  +  L + NVSYN LS L
Sbjct: 173 SSNRLT-HVDLSL--IPSLFHANVSYNLLSTL 201

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
            ++S N L+      +     +  L+ SHN ++         L     L L +N L+   
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT-DT 241

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
              L+    L   ++SYN L  ++  
Sbjct: 242 AW-LLNYPGLVEVDLSYNELEKIMYH 266

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 9/96 (9%), Positives = 30/96 (31%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           N         + +           E   L   +++   ++ +         + + +E L+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           L++ ++           + +    + +N +  L P 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
                +  L LS N+LT +V   +  +  +   N+S+N LS     + +    +E LD S
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 213

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           +N ++  +   +     L+   + +NNL+  
Sbjct: 214 HNSIN-VVRGPV--NVELTILKLQHNNLTDT 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 19/86 (22%), Positives = 33/86 (38%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS N L            +++VL+LS   +      ++ +L  + +L L+ N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
                 L+ L        NL+ L   
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENF 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 3e-11
 Identities = 18/95 (18%), Positives = 34/95 (35%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +   +  LDLS  ++          L  +  L L+ N +      +FS L  ++ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 118
              L+      +  L  L   NV++N +      +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L ++ N    N   +I  +L+ +  L+LS   L    P +F++L  ++ L++++N+L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 91  IPAQLIELNFLSNFNVSYNNLSGLIPD 117
                  L  L    +  N      P 
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKM 76
             ++  +L  +  LDLS N L+  G           ++ L+LS N +  ++  +F  L+ 
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 77  IESLDLSNNRLSGQIPAQ--LIELNFLSNFNVSYNNLSGLIPD 117
           +E LD  ++ L  Q+      + L  L   ++S+ +       
Sbjct: 398 LEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDL 82
            +L  ++ LD+S              L  + VL ++ N    +     F+ L+ +  LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           S  +L    P     L+ L   N++ N L  +   
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCL-SGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L      L       IG L+ ++ LN++HN + S  +P  FSNL  +E LDLS+N++   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 91  IPAQLIELNFLSNF----NVSYNNLSGLIPD 117
               L  L+ +       ++S N ++ + P 
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           LD   + L       +   L+ +  L++SH     +    F+ L  +E L ++ N     
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 91  IPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
               +   L  L+  ++S   L  L P 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 33  DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP 92
                     +P  +      + L+LS N L      SF +   ++ LDLS   +     
Sbjct: 13  QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 93  AQLIELNFLSNFNVSYNNLSGLIPD 117
                L+ LS   ++ N +  L   
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALG 94

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSGQ 90
           LDLS N +   +        ++  L L +N  S ++ +     L  +E   L       +
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 91  IPAQLIELNF---LSNFNVSYNNLSGL 114
              +  + +    L N  +    L+ L
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYL 267

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRV----LNLSHNCLSGSIPRSFSNLKMIES 79
           SNL  +  LDLS N++     +++  L ++ +    L+LS N ++   P +F  ++ +  
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204

Query: 80  LDLSNNRLSGQIP-------AQLIELNFLSNFNVSYNNLSGLIPD 117
           L L NN  S  +        A L     +     +  NL      
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
               ++  ++    Q           L+ ++ L  + N    +   S  +L  +E LDLS
Sbjct: 304 FGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLS 355

Query: 84  NNRLS--GQIPAQLIELNFLSNFNVSYNNLSGL 114
            N LS  G           L   ++S+N +  +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 8e-12
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            N   +V +DLS N+L   +      +Q++  L +S+N L  ++      +  ++ LDLS
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           +N L   +     + + L N  + +N++  L
Sbjct: 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 6e-10
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L  N LT    + + +   +  ++LS+N L   +   F  ++ +E L +SNNRL   +
Sbjct: 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-AL 293

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
                 +  L   ++S+N+L  +  +
Sbjct: 294 NLYGQPIPTLKVLDLSHNHLLHVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
            N+  +  L L  N L+ ++P  I  +  K+  L++S+N L      +F     +++L L
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           S+NRL+  +   L  +  L + NVSYN LS L
Sbjct: 179 SSNRLT-HVDLSL--IPSLFHANVSYNLLSTL 207

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 4/115 (3%)

Query: 2   LTYPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSH 60
                 V ++  T++ Y  +    LN    +    + +   +P+ +    +++ +LNL+ 
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 61  NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGL 114
             +      +F+    I+ L +  N +   +P  + + +  L+   +  N+LS L
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S +  +   ++S N L+      +     +  L+ SHN ++         L     L L 
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQ 240

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +N L+      L+    L   ++SYN L  ++  
Sbjct: 241 HNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYH 272

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 9/96 (9%), Positives = 30/96 (31%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           N         + +           E   L   +++   ++ +         + + +E L+
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           L++ ++           + +    + +N +  L P 
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             +  +  LDLS N L  +V        ++  L L HN +  ++    S    +++L LS
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 353

Query: 84  NNRLS 88
           +N   
Sbjct: 354 HNDWD 358

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           SNL  +  L L  N ++    S +  L K++ L   +N +S     S +NL  I  L   
Sbjct: 306 SNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT 139
           +N++S   P  L  L  ++   ++    +    +     +   T       L  P 
Sbjct: 362 HNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S L  +  L L  NQ++    S +  L  +  L L+ N L    P   SNLK +  L L 
Sbjct: 262 SGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLY 317

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            N +S   P  +  L  L       N +S +  
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           ++L+ +  L      +       +  L  +  +N S+N L+   P    NL  +  + ++
Sbjct: 43  TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 98

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN+++   P  L  L  L+   +  N ++ + P
Sbjct: 99  NNQIADITP--LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L  +  L  + NQ++    + +G L  +  L+L+ N L      + ++L  +  LDL+
Sbjct: 196 AKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 251

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN++S   P  L  L  L+   +  N +S + P
Sbjct: 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            NL  +V + ++ NQ+     + + +L  +  L L +N ++   P    NL  +  L+LS
Sbjct: 87  KNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELS 142

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           +N +S  I A L  L  L   +   N ++ L P
Sbjct: 143 SNTISD-ISA-LSGLTSLQQLSFG-NQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L   +   L    +T  V     DL ++  L      +          L  +  ++ S
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFS 76

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN+L+   P  L  L  L +  ++ N ++ + P
Sbjct: 77  NNQLTDITP--LKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NL  + GL L  NQ+T      + +L  +  L LS N +S     + S L  ++ L   
Sbjct: 109 ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           N  ++   P  L  L  L   ++S N +S +  
Sbjct: 165 NQ-VTDLKP--LANLTTLERLDISSNKVSDISV 194

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +NL  +  L    NQ++    + + +L +I  L L+    + +     +N+ +  ++   
Sbjct: 350 ANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
              L    PA + +    +  ++++N  S  
Sbjct: 408 TGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S L  +  L              + +L  +  L++S N +S       + L  +ESL  +
Sbjct: 153 SGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN++S   P  L  L  L   +++ N L  +  
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKDIGT 238

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 34  LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
                +  N       L +     L    ++ ++    ++L  + +L      +      
Sbjct: 9   TQDTPI--NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SID 62

Query: 94  QLIELNFLSNFNVSYNNLSGLIP 116
            +  LN L+  N S N L+ + P
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP 85

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 3e-11
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L L+   LT  V   +  L  +  L+LSHN L  ++P + + L+ +E L  S+N L   +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
              +  L  L    +  N L   
Sbjct: 502 DG-VANLPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
            L +   L  +  LDLS N+L   +P  +  L+ + VL  S N L  ++    +NL  ++
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 79  SLDLSNNRLSGQIPA--QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
            L L NNRL  Q  A   L+    L   N+  N+L              E   +  L   
Sbjct: 512 ELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLC------------QEEGIQERLAEM 558

Query: 137 CPTI 140
            P++
Sbjct: 559 LPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 35  SCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQ 94
             ++          +   +RVL+L+H  L+  +      L ++  LDLS+NRL   +P  
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPA 481

Query: 95  LIELNFLSNFNVSYNNLSGL 114
           L  L  L     S N L  +
Sbjct: 482 LAALRCLEVLQASDNALENV 501

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 5e-11
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S L+ +  L +    +T +    +  L  + +L++SH+    SI    + L  + S+DLS
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            N     I   L  L  L + N+ ++ +     
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 24  SNLNYMVGL---DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
           + + Y   +    ++    T    + I  L  +  L +    ++     + S L  +  L
Sbjct: 60  TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
           D+S++     I  ++  L  +++ ++SYN  
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + +N +  + L+   +T    + I     I+ L +++   +   P   S L  +E L + 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 118
              ++      L  L  L+  ++S++     I  K
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP--------------- 68
           S L  +  LD+S +    ++ ++I  L K+  ++LS+N     I                
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

Query: 69  ------RSFSNLKMIESLDLSNNRLSG 89
                 R   +   +  L   +  + G
Sbjct: 169 DGVHDYRGIEDFPKLNQLYAFSQTIGG 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 26/196 (13%)

Query: 32  LDLSCNQLTGNVPSEI-----GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
           L L  N L     +E+       L  ++VL L+HN L+   P  FS+L  +  L L++NR
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 87  LSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQY-----------------STFDETSY 129
           L+  +    +  N L   ++S N L    PD                     STF     
Sbjct: 516 LT-VLSHNDLPAN-LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLN 573

Query: 130 RGNLYLSCPTINKSCNSAEEKPA--IKSKGREDEDDSAIDMVSLYWSFGASYVTVILGLL 187
             N+ ++ P  +  C   +      + S   E  D+  +     +  F    VT+ L L+
Sbjct: 574 HTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLM 633

Query: 188 AILWINSFWRKRWFYF 203
            IL +  F    +  +
Sbjct: 634 TILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 6e-11
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSI-PRSFSNLKMIESLDL 82
             LN    L LS N +     S    L+++++L L       +I   +F NL  +  LDL
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 83  SNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPDKG 119
            ++++   +     + L  L    + +  LS  +   G
Sbjct: 81  GSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 6e-11
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
             L  +  L+L        +  E   +L  +R+L+L  + +    P +F  L  +  L L
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104

Query: 83  SNNRLSGQI--PAQLIELNFLSNFNVSYNNLSGLIPDK 118
               LS  +        L  L+  ++S N +  L    
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 19/86 (22%), Positives = 40/86 (46%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS   +          L+ ++VLNL++N ++     +F  L  ++ L+LS N L    
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
            +    L  ++  ++  N+++ +   
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQ 356

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 4e-10
 Identities = 21/91 (23%), Positives = 38/91 (41%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L+L+ N++          L  ++VLNLS+N L      +F  L  +  +DL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            N ++         L  L   ++  N L+ +
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
                  LT  VP     L     L LS N +      SF  L+ ++ L+L +      I
Sbjct: 9   AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 92  PAQLIE-LNFLSNFNVSYNNLSGLIPD 117
             +    L  L   ++  + +  L PD
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPD 91

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 32  LDLSCNQLTG-NVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSG 89
           + LS N+L   ++   +  +  +++L L+ N  S  S  ++ S    +E L L  N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 90  QIPAQLIELNF-----LSNFNVSYNNLSGLIPD 117
               +L    F     L    +++N L+ L P 
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKM-- 76
            L    N   +       N ++ +    +     I       + +      +F+ L    
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267

Query: 77  IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           +  LDLS+  +          L  L   N++YN ++ +  +
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 12/107 (11%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTG-NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKM-- 76
             N   L     LDLS NQ+    +    G L  ++ ++ S N +          L+   
Sbjct: 119 FRNLKALTR---LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 77  IESLDLSNNRLSGQIPA------QLIELNFLSNFNVSYNNLSGLIPD 117
           +    L+ N L  ++               L   +VS N  +  I  
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  LDL  N LT      I  +  I  + LS N L      + +       + LS
Sbjct: 359 KFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTA----NLIHLS 409

Query: 84  NNRLSG-QIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            NRL    I   L+ +  L    ++ N  S    D
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 24/87 (27%), Positives = 40/87 (45%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDLS N++T     ++     ++VL L  + ++     +F +L  +E LDLS+N LS   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDK 118
            +    L+ L   N+  N    L    
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTS 117

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
               +  L +    L  ++ +    L+K++ + + ++ +         +LK +E LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 85  NRLSGQIPAQLIELNFLSN---FNVSYNNLSGL 114
           N +  +            +     +S N+L  +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 32  LDLSCNQLTG-NVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSG 89
           L+L  N      V S   +L  ++ L + +      I R  F+ L  +  L++    L  
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162

Query: 90  QIPAQLIELNFLSNFNVSYNNLSGLIPD 117
                L  +  + +  +  +  + L+  
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEI 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
                +  L L  +++          L  +  L+LS N LS      F  L  ++ L+L 
Sbjct: 47  RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 84  NNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
            N         L   L  L    +        I  
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
            D      T ++PS +     ++ L+LS N ++            ++ L L ++R++   
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPD 117
                 L  L + ++S N+LS L   
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSS 92

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 32  LDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG 89
           L LS N L         +  L+ +  L++S N     +P S    + +  L+LS+  +  
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR- 423

Query: 90  QIPAQLIELNFLSNFNVSYNNLSGL 114
            +   +     L   +VS NNL   
Sbjct: 424 VVKTCI--PQTLEVLDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 14/91 (15%), Positives = 29/91 (31%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L  +  L++    L       +  ++ I  L L  +  +  +      L  +  L+L 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           +  L+    + L      S         S L
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSE-IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
            NL  +  L +   +    +       L  +  L +    L     +S  +++ I  L L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
             +  +  +      L+ +    +   NL+  
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARF 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQK--------IRVLNLSHNCLSGSIPRSF 71
           L     L+ +   D + N L    PSE   + +        IR L++    L   +   +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 72  SNLKMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           S L+ ++ + + N+++   +P    + L  L   ++S N +      
Sbjct: 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LD+S N L  +       L +++ L +S N L  ++P   S   ++  + +S N+L    
Sbjct: 436 LDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVP 489

Query: 92  PAQLIELNFLSNFNVSYNNL 111
                 L  L    +  N  
Sbjct: 490 DGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L +S N+L   +P        + V+ +S N L       F  L  ++ + L 
Sbjct: 448 LFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 84  NNRL 87
            N  
Sbjct: 506 TNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 14/123 (11%), Positives = 37/123 (30%), Gaps = 12/123 (9%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            ++  +  L L  ++    +      L  +R L L    L+          ++   +   
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 84  NNRLSG----------QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNL 133
             R S           ++   ++EL+ +   + + N L     +  +     E      +
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF--NPSESDVVSELGKVETV 286

Query: 134 YLS 136
            + 
Sbjct: 287 TIR 289

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L  N++T  V +     L  +  L LS N +S     S +N   +  L L+NN+L  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 91  IPAQLIELNFLSNFNVSYNNLSGL 114
           +P  L +  ++    +  NN+S +
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDL  N++T     +  +L+ +  L L +N +S   P +F+ L  +E L LS N+L  ++
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P ++     L    V  N ++ +
Sbjct: 116 PEKM--PKTLQELRVHENEITKV 136

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             LN +  L LS N ++      + +   +R L+L++N L   +P   ++ K I+ + L 
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271

Query: 84  NNRLSG------QIPAQLIELNFLSNFNVSYNNLSGL-IPDKGQYSTFDETSYRGNLYLS 136
           NN +S         P    +    S  ++  N +    I      STF     R  + L 
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP----STFRCVYVRAAVQLG 327

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDL 82
            NL  +  L L  N+++   P     L K+  L LS N L   +P      L   + L +
Sbjct: 73  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTL---QELRV 128

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
             N ++    +    LN +    +  N L 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDL 82
           + L  +  L LS NQL   +P ++   + ++ L +  N ++  + +  F+ L  +  ++L
Sbjct: 97  APLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVEL 152

Query: 83  SNNRL-SGQIPAQ-LIELNFLSNFNVSYNNLSGL 114
             N L S  I       +  LS   ++  N++ +
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 21/95 (22%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 24  SNLNYMVGLDLSCNQLT-GNVPSEI-GDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESL 80
           + LN M+ ++L  N L    + +     ++K+  + ++   ++ +IP+    +L     L
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSL---TEL 197

Query: 81  DLSNNRLSGQIPAQ-LIELNFLSNFNVSYNNLSGL 114
            L  N+++ ++ A  L  LN L+   +S+N++S +
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +  S   L   VP ++       +L+L +N ++      F NLK + +L L NN++S +I
Sbjct: 36  VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI 91

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGL 114
                  L  L    +S N L  L
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKEL 115

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 24  SNLNYMVGLDLSCNQLTG------NVPSEIGDLQKIRVLNLSHNCLSGSI--PRSFSNLK 75
           ++  Y+  + L  N ++         P           ++L  N +      P +F  + 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 76  MIESLDLSNNR 86
           +  ++ L N +
Sbjct: 320 VRAAVQLGNYK 330

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLD 81
             +  +  LDLS N L   +   +  DLQ + VL L +N +   + R +F ++  ++ L 
Sbjct: 85  VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 82  LSNNRLSGQIPAQLIE----LNFLSNFNVSYNNLSGLIPD 117
           LS N++S + P +LI+    L  L   ++S N L  L   
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 32  LDLSCNQLTGNVPSEI--GDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLS 88
           LDLS N L+  + +E     L  +  L LSHN L+  I   +F  +  +  LDLS+N L 
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 89  GQIPAQ-LIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137
             +      +L  L    +  N++  +  +      F++ +    LYLS 
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRN-----AFEDMAQLQKLYLSQ 145

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIP----RSFSNLKMIESLDLSNNR 86
           L L  N +   V      D+ +++ L LS N +S   P    +  + L  +  LDLS+N+
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 87  LSGQIPAQLIELNFLSNFNVSYNN 110
           L       L +L       +  +N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHN 198

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 20/98 (20%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR---------------SFSNLKM 76
           L  SCN LT  +P     L+ + V N +   LS   P                   N   
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154

Query: 77  IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           ++ +D+ NN L  ++P     L F+       N L  L
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLEEL 188

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 18/106 (16%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDL-------------QKIRVLNLSHNCLSGSIPRS 70
            N+        + ++   N P   G+              ++   L L++  LS S+P  
Sbjct: 31  ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL 89

Query: 71  FSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
             +L   ESL  S N L+ ++P     L  L   N +   LS L P
Sbjct: 90  PPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            N +++  +D+  N L   +P     L+    +   +N L   +P    NL  + ++   
Sbjct: 150 QNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-ELP-ELQNLPFLTAIYAD 203

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           NN L  ++P   + L  +       N L  L
Sbjct: 204 NNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +    N L      E+ +L  +  +   +N L  ++P    +L+   +L++ +N L+  +
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DL 272

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P     L FL      ++ LS L P
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            NL ++  +    N L   +P     L+    +   +N L         NL  + ++   
Sbjct: 192 QNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILE--ELPELQNLPFLTTIYAD 245

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           NN L   +P        L   NV  N L+ L
Sbjct: 246 NNLLK-TLPD---LPPSLEALNVRDNYLTDL 272

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L+ S N++  ++      L+    LN+S+N L   +P     L   E L  S N L+ ++
Sbjct: 302 LNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EV 352

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P     L  L   +V YN L   
Sbjct: 353 PELPQNLKQL---HVEYNPLREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPS---------------EIGDLQKIRVLNLSHNCLSGSIP 68
            +L  ++  + +   L+   P                E+ +   ++++++ +N L   +P
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP 169

Query: 69  RSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
               +L   E +   NN+L  ++P +L  L FL+      N+L  L  
Sbjct: 170 DLPPSL---EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPD 212

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 18/96 (18%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNL-------------KMIE 78
                + LT  +P E  +++       + +    + P                   +   
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            L+L+N  LS  +P     L  L     S N+L+ L
Sbjct: 75  ELELNNLGLS-SLPELPPHLESL---VASCNSLTEL 106

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            NL ++  +    N L   +P     L+    LN+  N L+  +P    +L  ++  +  
Sbjct: 234 QNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVRDNYLT-DLPELPQSLTFLDVSENI 288

Query: 84  NNRLSGQIPAQLIELNFLSN--------------FNVSYNNLSGL 114
            + LS ++P  L  LN  SN               NVS N L  L
Sbjct: 289 FSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL 332

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 13/85 (15%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L +  N L    P     ++     +L  N     +P    NLK    L +  N L  + 
Sbjct: 362 LHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQNLK---QLHVETNPLR-EF 411

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIP 116
           P        + +  ++   +     
Sbjct: 412 PD---IPESVEDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           L +  N L    P     ++    L ++   +      +      +E     ++   
Sbjct: 401 LHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L  N++   +  E      K+  L L HN +      S S L  +  L L NN+LS +
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 91  IPAQLIELNFLSNFNVSYNNLSGL 114
           +PA L +L  L    +  NN++ +
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDL  N ++     +   LQ +  L L +N +S    ++FS L+ ++ L +S N L  +I
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
           P  L   + L    +  N +  +
Sbjct: 118 PPNL--PSSLVELRIHDNRIRKV 138

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L ++  L L  N+++         L+K++ L +S N L    P   S+L     L + 
Sbjct: 75  KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRIH 131

Query: 84  NNRLSGQIPAQLIE-LNFLSNFNVSYNNLS 112
           +NR+  ++P  +   L  ++   +  N L 
Sbjct: 132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 24  SNLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLD 81
           S L  M  +++  N L          D  K+  L +S   L+  IP+     L     L 
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETL---NELH 199

Query: 82  LSNNRLSGQIPAQ-LIELNFLSNFNVSYNNLSGL 114
           L +N++   I  + L+  + L    + +N +  +
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDL 82
           S L  +  L +S N L   +P  +     +  L +  N +   +P+  FS L+ +  +++
Sbjct: 99  SPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEM 154

Query: 83  SNNRL-SGQIPAQLIELNFLSNFNVSYNNLSGL 114
             N L +        +   L+   +S   L+G+
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-------RSFSNLKM 76
           S L  +  L L  N+L+  VP+ + DL+ ++V+ L  N ++  +                
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 77  IESLDLSNNRLS 88
              + L NN + 
Sbjct: 296 YNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +  S   L   VP EI       +L+L +N +S      F  L+ + +L L NN++S +I
Sbjct: 38  VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KI 93

Query: 92  PAQLIE-LNFLSNFNVSYNNLSGL 114
             +    L  L    +S N+L  +
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEI 117

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSG 89
           LDLS N L     +   D   ++  LNLS   L   +P+   + L     LDLS NRL  
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKL---SVLDLSYNRLDR 288

Query: 90  QIPAQLIELNFLSNFNVSYNNLSG 113
             P    EL  + N ++  N    
Sbjct: 289 -NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 32  LDLSCNQLTGNVPSEI----GDLQKIRVLNLSHN---CLSGSIPRSFSNLKMIESLDLSN 84
           LDLS N   G               ++VL L +      SG      +    ++ LDLS+
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 85  NRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIP 116
           N L     A   +  + L++ N+S+  L  +  
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFS----NLKMIESLDLSNNR- 86
           L ++          ++     +  L+LS N   G      +        ++ L L N   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 87  --LSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
              SG   A       L   ++S+N+L      
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 32  LDLSCNQLTGNVPSEIGDLQ-----KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
           L+L          + + +LQ      ++VL+++                 + +LDLS+N 
Sbjct: 126 LNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 87  LSGQIP----AQLIELNFLSNFNVSYNNLSGL 114
             G+         ++   L    +    +   
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETP 216

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L++S N ++    S+I  L K+R+L +SHN +       F   + +E LDLS+N+L    
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
               + L  L   ++S+N    L
Sbjct: 86  CHPTVNLKHL---DLSFNAFDAL 105

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS--FSNLKMIESLDLSNNRLSG 89
           LDLS N+L   +         ++ L+LS N    ++P    F N+  ++ L LS   L  
Sbjct: 74  LDLSHNKLV-KISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 90  QIPAQLIELNFLSNFNVSYNNL 111
                +  LN      V     
Sbjct: 130 SSVLPIAHLNISKVLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +D S N L  +VP ++    K  +LN+S N +S        +L  +  L +S+NR+    
Sbjct: 5   VDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDK 118
            +       L   ++S+N L  +    
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKISCHP 88

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           SN+N     + + +            +     L+ S+N L+ ++  +  +L  +E+L L 
Sbjct: 300 SNMNI---KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 84  NNRLS--GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
            N+L    +I     ++  L   ++S N++S              T    +L +S
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK----GDCSWTKSLLSLNMS 407

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNN 85
           LDL  N++  ++P ++  L+ ++ LN++ N L  S+P   F  L  ++ + L  N
Sbjct: 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           L++S N LT  +   +    +I+VL+L  N +  SIP+    L+ ++ L++++N+L 
Sbjct: 404 LNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 32  LDLSCNQLTGNVPSEIG---DLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRL 87
           L L  NQL   +         ++ ++ L++S N +S    +   S  K + SL++S+N L
Sbjct: 353 LILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 88  SGQIPAQLIELNFLSNFNVSYNNLSGL 114
           +  I   L     +   ++  N +  +
Sbjct: 412 TDTIFRCLPPR--IKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 3/116 (2%)

Query: 21  YNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
           Y+G++L  +    +  +               + + N + +          S +     L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
           D SNN L+  +      L  L    +  N L  L           +      L +S
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE---MTTQMKSLQQLDIS 382

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 9e-10
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S LN +  L L    LT      +  L  + VL L H  ++     SF  L  ++ L++S
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
           +      +    +    L++ ++++ NL+ +      Y       Y   L LS
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-----PYLAVRHLVYLRFLNLS 256

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDL  N++      E      +  L L+ N +S   P +F+NL  + +L L +NRL   I
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95

Query: 92  PAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           P  +   L+ L+  ++S N +  L+  
Sbjct: 96  PLGVFTGLSNLTKLDISENKIVILLDY 122

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDL 82
           ++  ++  L+L+ N ++   P    +L  +R L L  N L   IP   F+ L  +  LD+
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDI 111

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           S N++   +     +L  L +  V  N+L  +
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSE-IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
            G NL     L ++   LT  VP   +  L  +R LNLS+N +S         L  ++ +
Sbjct: 222 YGLNLTS---LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            L   +L+   P     LN+L   NVS N L+ L   
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L  N+L   +P  +   L  +  L++S N +   +   F +L  ++SL++ +N L   
Sbjct: 85  LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-Y 142

Query: 91  IPAQ-LIELNFLSNFNVSYNNLSGL 114
           I  +    LN L    +   NL+ +
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSI 167

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +     +    VP  I    + R+L+L  N +       F++   +E L+L+ N +S  +
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AV 71

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGL 114
                  L  L    +  N L  +
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLI 95

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLD 81
             L  +  + L   QL   V       L  +RVLN+S N L+ ++  S F ++  +E+L 
Sbjct: 269 HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326

Query: 82  LSNNRLS 88
           L +N L+
Sbjct: 327 LDSNPLA 333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 24  SNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
             L  +  L LS N L+  G           ++ L+LS N +  ++  +F  L+ +E LD
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 82  LSNNRLSGQIPAQ--LIELNFLSNFNVSYNNLSGLIPD 117
             ++ L  Q+      + L  L   ++S+ +       
Sbjct: 108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           + L  +  LDLS  QL   +       L  ++VLN+SHN         +  L  ++ LD 
Sbjct: 172 TELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 83  SNNRLSGQIPAQLIE--LNFLSNFNVSYNNLS 112
           S N +      Q ++   + L+  N++ N+ +
Sbjct: 231 SLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           LD   + L       +   L+ +  L++SH     +    F+ L  +E L ++ N     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 91  IPAQ-LIELNFLSNFNVSYNNLSGL 114
                  EL  L+  ++S   L  L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ- 90
           +  +   LT +VP+ I        L L  N L       F  L  +  L LS+N LS + 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 91  -IPAQLIELNFLSNFNVSYNNLSGL 114
                      L   ++S+N +  +
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITM 93

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L+L  NQ+     +    L+ + +L LS N +      +F+ L  + +L+L +NRL+  I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGL 114
           P    + L+ L    +  N +  +
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L  +  LDLS N L+   P     L  ++ L +  + +      +F NL+ +  ++L+
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 84  NNRLSGQIPAQLIE-LNFLSNFNVSYNNL 111
           +N L+  +P  L   L+ L   ++ +N  
Sbjct: 264 HNNLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDL 82
            +L ++  L LS N +          L  +  L L  N L+ +IP  +F  L  ++ L L
Sbjct: 85  KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWL 143

Query: 83  SNNRLSGQIPA-------QLIELNFLSNFN 105
            NN +   IP+        L  L+ L    
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLD-LGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLD 81
           + L  +  L+L  N+LT  +P+     L K++ L L +N +  SIP  +F+ +  +  LD
Sbjct: 109 NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166

Query: 82  LS-NNRLSGQIPAQ-LIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
           L    RLS  I       L+ L   N++  NL  +                  L LS
Sbjct: 167 LGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREI-------PNLTPLIKLDELDLS 215

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 24  SNLNYMVGLDLS-CNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           + +  +  LDL    +L+  +       L  +R LNL+   L   IP + + L  ++ LD
Sbjct: 157 NRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
           LS N LS   P     L  L    +  + +  +  +
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +      L   VP  I      R+LNL  N +      SF +L+ +E L LS N +   I
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
                  L  L+   +  N L+ +         F   S    L+L 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNG-----AFVYLSKLKELWLR 144

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-07
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 32  LDLSCNQLTGNVPSE-IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L +   Q   ++    +  L ++R L +  + L    P +F     +  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 91  IPAQLIELNFLSNFNVSYNNL 111
           +  + ++   L    +S N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 42  NVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSGQIPAQ-LIELN 99
           +    +   + +  L + +      +       L  + +L +  + L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 100 FLSNFNVSYNNLSGLIPD 117
            LS  N+S+N L  L   
Sbjct: 81  RLSRLNLSFNALESLSWK 98

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 11/90 (12%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDL 82
            +L+++  L L  N +          L  +  L L  N L+  IP  +F  L  +  L L
Sbjct: 96  RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWL 154

Query: 83  SNNRLSGQIPA-------QLIELNFLSNFN 105
            NN +   IP+        L+ L+ L    
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLD-LGELK 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           L+L  N +          L  + VL L  N +      +F+ L  + +L+L +N L+  I
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VI 138

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGLIPD 117
           P+     L+ L    +  N +  +   
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIESIPSY 165

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L  +  L++S N      P     L  ++ L + ++ +S     +F  L  +  L+L+
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 84  NNRLSGQIPAQLIE-LNFLSNFNVSYNNL 111
           +N LS  +P  L   L +L   ++ +N  
Sbjct: 275 HNNLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           + L  +  L+L  N LT  +PS     L K+R L L +N +      +F+ +  +  LDL
Sbjct: 120 NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178

Query: 83  S-NNRLSGQIPAQ-LIELNFLSNFNVSYNNLSGL 114
               +L   I       L  L   N+   N+  +
Sbjct: 179 GELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDM 211

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 24  SNLNYMVGLDLS-CNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
           + +  ++ LDL    +L   +       L  ++ LNL    +   +P + + L  +E L+
Sbjct: 168 NRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224

Query: 82  LSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 117
           +S N    +I       L+ L    V  + +S +  +
Sbjct: 225 MSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           +  +   L+  VP  I      R LNL  N +      +F +L  +E L L  N +  QI
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QI 114

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
                  L  L+   +  N L+ +         F+  S    L+L 
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSG-----AFEYLSKLRELWLR 155

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSGQ 90
           +DLS N +     +    LQ ++ L +        I   +F  L  +  L L  N+   Q
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-Q 93

Query: 91  IPAQLIE-LNFLSNFNVSYNNL-SGLIPD 117
           +       L  L    ++  NL   ++  
Sbjct: 94  LETGAFNGLANLEVLTLTQCNLDGAVLSG 122

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLD 81
           S L  +  L +        + +     L  + +L L +N     +   +F+ L  +E L 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLT 109

Query: 82  LSNNRL-SGQIPA----QLIELNFLSNFNVSYNNLSGLIPD 117
           L+   L    +       L  L  L    +  NN+  + P 
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLV---LRDNNIKKIQPA 147

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L+ N++   +       L  +  LNLS N L     R F NL  +E LDLS N +   
Sbjct: 304 LTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-A 361

Query: 91  IPAQLIE-LNFLSNFNVSYNNLS 112
           +  Q    L  L    +  N L 
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSI--PRSFSNLKMIESLDLSNNRLS 88
           L L  NQ    + +     L  + VL L+   L G++     F  L  +E L L +N + 
Sbjct: 84  LKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

Query: 89  GQIPAQLIE-LNFLSNFNVSYNNLSGL 114
              PA     +      ++++N +  +
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSI 169

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQ--KIRVLNLSHNCLSGSIPR-SFSNLKMIESLD 81
           + +Y +G                  L+   ++  +LS + +  ++ +  FS+   +E L 
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 82  LSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGL 114
           L+ N ++ +I       L  L  L   N+S N L  +
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLKL---NLSQNFLGSI 338

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 53  IRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSY 108
           +  ++LS N ++     SFS L+ ++ L +        I       L  L  L    + Y
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL---KLDY 88

Query: 109 NNLSGL 114
           N    L
Sbjct: 89  NQFLQL 94

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNN 85
           LDLS N +   +  +    L  ++ L L  N L  S+P   F  L  ++ + L  N
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           + L  N+++    +     + + +L L  N L+     +F+ L ++E LDLS+N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 92  PAQLIE-LNFLSNFNVSYNNLSGL 114
                  L  L   ++    L  L
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQEL 120

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLDL 82
                +  L L  N L     +    L  +  L+LS N    S+   +F  L  + +L L
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 83  SNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGL 114
               L  ++       L  L +L    +  N L  L
Sbjct: 113 DRCGLQ-ELGPGLFRGLAALQYL---YLQDNALQAL 144

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L  N L   +P +   DL  +  L L  N +S    R+F  L  ++ L L  NR++  
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191

Query: 91  IPAQLIE-LNFLSNFNVSYNNLSGL 114
           +       L  L    +  NNLS L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLD 81
           + L  +  LDLS N    +V       L ++  L+L    L   +    F  L  ++ L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 82  LSNNRLSGQIPAQ----LIELNFLSNFNVSYNNLSGLIPD 117
           L +N L   +P      L  L  L    +  N +S +   
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHL---FLHGNRISSVPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L  N+++ +VP      L  +  L L  N ++   P +F +L  + +L L  N LS  
Sbjct: 158 LFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-A 215

Query: 91  IPAQLIE-LNFLSNFNVSYNNL 111
           +P + +  L  L    ++ N  
Sbjct: 216 LPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
                  L   VP  I      + + L  N +S     SF   + +  L L +N L+ +I
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RI 71

Query: 92  PAQ-LIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
            A     L  L   ++S N     +      +TF        L+L 
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDP----ATFHGLGRLHTLHLD 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLDLSNNRLSGQ 90
           LDLS N++T    S++     ++ L L+ N ++ +I   SFS+L  +E LDLS N LS  
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-N 114

Query: 91  IPAQLIE-LNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137
           + +   + L+ L+  N+  N    L       S F   +    L +  
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKTLGET----SLFSHLTKLQILRVGN 158

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSG- 89
           L++  + L    P  +  +Q +  L L        +          +E L+L +  L   
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 90  ---QIPA----QLIELNFLSNFNVSYNNLSGLIP 116
              ++       LI+     N  ++  +L  ++ 
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
           S+L  +  L +        +  +    L  +  L +  + L    P+S  +++ +  L L
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 83  SNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGL 114
              +    +    ++  + +    +   +L   
Sbjct: 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLD 81
                +  L L+ N +   +  +    L  +  L+LS+N LS ++  S F  L  +  L+
Sbjct: 73  QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130

Query: 82  LSNNRLSGQIPAQL-IELNFLSNFNVSYNNLSGLIPD 117
           L  N         L   L  L    V   +    I  
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDL 82
                   + ++   L   V   +  +  +  L  S N L  S+P   F  L  ++ + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

Query: 83  SNN 85
             N
Sbjct: 309 HTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 33  DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP 92
             S   L  ++PS +   + ++ L+LS+N ++            +++L L++N ++  I 
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 93  AQ----LIELNFLSNFNVSYNNLSGL 114
                 L  L  L   ++SYN LS L
Sbjct: 93  EDSFSSLGSLEHL---DLSYNYLSNL 115

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 14/113 (12%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           ++   +  LD     +T     ++    K+  L L++  L+  +    S+   ++SL   
Sbjct: 294 THNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
           N  +     + + ++  L+N   +      +  +    ++         L   
Sbjct: 348 NAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 16  NRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
            +    + +    +  LD S N++T     ++   + +  LN   N ++  +    +   
Sbjct: 159 KKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNI 212

Query: 76  MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            +  LD S+N+L+ +I   +  L  L+ F+ S N L+ L
Sbjct: 213 QLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL 248

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L  + N +T     ++     +  L    N L+ ++    + L  +  L+  
Sbjct: 61  EKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCD 114

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            N+L+    +Q   L +L   N + N L+ +
Sbjct: 115 TNKLTKLDVSQNPLLTYL---NCARNTLTEI 142

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           +    +  LD S N+LT     ++  L ++   + S N L+  +    S L  + +L   
Sbjct: 209 NQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCI 262

Query: 84  NNRLSGQIPA----QLIELNFLSNFNVSYNNLSGL 114
              L  +I      QLI         +   +++  
Sbjct: 263 QTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHN 296

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S    +  L+ + N LT     ++    ++  L+   N     +    +    + +LD S
Sbjct: 124 SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            N+++    +Q   LN L   N   NN++ L
Sbjct: 179 FNKITELDVSQNKLLNRL---NCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           S    +  L    N+LT N+   +  L K+  LN   N L+  +    S   ++  L+ +
Sbjct: 82  SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCA 135

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            N L+    +   +L  L   +   N     + 
Sbjct: 136 RNTLTEIDVSHNTQLTEL---DCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
              +  ++          L  +  L+  ++ ++  +      L  +  L  ++N ++   
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTLD 80

Query: 92  PAQLIELNFLSNFNVSYNNLSGL 114
            +Q   L +L       N L+ L
Sbjct: 81  LSQNTNLTYL---ACDSNKLTNL 100

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
           + L+ +  L L  NQ+T    S +  L  ++ L++ +  +S  +    +NL  + +L   
Sbjct: 126 AGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVS-DLT-PLANLSKLTTLKAD 181

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           +N++S  I   L  L  L   ++  N +S + P
Sbjct: 182 DNKIS-DISP-LASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             LN ++GL+L  NQ+T    + + +L KI  L LS N L  ++  + + L+ I++LDL+
Sbjct: 60  QYLNNLIGLELKDNQIT--DLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLT 115

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           + +++   P  L  L+ L    +  N ++ + P
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L   + +    + +T        DL  I  L+     ++ +I      L  +  L+L 
Sbjct: 16  PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELK 71

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG 119
           +N+++   P  L  L  ++   +S N L  +    G
Sbjct: 72  DNQITDLAP--LKNLTKITELELSGNPLKNVSAIAG 105

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
                +  L+L   +LT       G L  +  L+LSHN L  S+P     L  +  LD+S
Sbjct: 52  MPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 84  NNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137
            NRL+  +P      L EL  L    +  N L  L P          T     L L+ 
Sbjct: 109 FNRLT-SLPLGALRGLGELQELY---LKGNELKTLPPG-----LLTPTPKLEKLSLAN 157

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLS 88
           L L  N+L   +P  +     K+  L+L++N L+  +P    + L+ +++L L  N L 
Sbjct: 129 LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLDLSNNRLSG 89
           LD+S N+LT ++P      L +++ L L  N L  ++P    +    +E L L+NN L+ 
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161

Query: 90  QIPAQLIE-LNFLSNFNVSYNNLSGLIPDKGQYSTFDETS 128
           ++PA L+  L  L    +  N+L   IP       F    
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYT-IPK----GFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           ++     LT  +P ++  D      L+LS N L      +      +  L+L    L+ +
Sbjct: 15  VNCDKRNLT-ALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-K 69

Query: 91  IPA--QLIELNFLSNFNVSYNNLSGL 114
           +     L  L  L   ++S+N L  L
Sbjct: 70  LQVDGTLPVLGTL---DLSHNQLQSL 92

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN 85
           L L+ N LT  +P+ + + L+ +  L L  N L  +IP+ F    ++    L  N
Sbjct: 153 LSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLK-MIESLDLSNNRLS- 88
           L L  N  T +V     +  K+  + L+ N     I + +F  +      LD+S   ++ 
Sbjct: 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

Query: 89  --GQIPAQLIELNFLSNFN 105
              +    L EL   + + 
Sbjct: 220 LPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLD 81
           SNL  +  + +S +     + S    +L K+  + + +      I       L +++ L 
Sbjct: 52  SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111

Query: 82  LSNNRLSGQIPAQ--LIELNFLSNFNVSYNNLSGLIPD 117
           + N  L    P    +   +      ++ N     IP 
Sbjct: 112 IFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNN 85
           LDL  N++  ++P ++  LQ ++ LN++ N L  S+P   F  L  ++ + L +N
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS--FSNLKMIESLDLSNNRLSG 89
           LD+S N+L  N+      +  +R L+LS N     +P    F NL  +  L LS  +   
Sbjct: 105 LDVSHNRLQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 90  QIPAQLIELNFLSNF-NVSYNNLSGLIPD 117
                +  L+      ++   ++ G   +
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETE 189

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 39/56 (69%), Gaps = 3/56 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
           L+LS N LTG+V   +    K++VL+L +N +  SIP+  ++L+ ++ L++++N+L
Sbjct: 433 LNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDL 82
            N++ +  LD+S N L  +         + I VLNLS N L+GS+ R       ++ LDL
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDL 457

Query: 83  SNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
            NNR+   IP  +  L  L   NV+ N L
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 21  YNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
           Y+ + L  ++   +       +  +      ++ +  LS +           +      L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI 140
           + + N  +  +      L  L    +  N L         +     T    +L     ++
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF------FKVALMTKNMSSLETLDVSL 412

Query: 141 NK 142
           N 
Sbjct: 413 NS 414

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
           L LS N++  ++   +    Q +  L++SHN L  +I      +  +  LDLS N   
Sbjct: 81  LRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFD 134

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L  ++        + D  +++  L+  +  L+ SI  +   L  ++ L+LS+NR+SG 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGG 79

Query: 91  IPAQLIELNFLSNFNVSYNNLSGL 114
           +     +   L++ N+S N +  L
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 22  NGSNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
                  +  L      LT   N+P     L K++ L LS N +SG +         +  
Sbjct: 37  LTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92

Query: 80  LDLSNNRLSGQIPAQLIELNFLSNF 104
           L+LS N++       L  +  L   
Sbjct: 93  LNLSGNKIK-----DLSTIEPLKKL 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDL 82
             LN +  L+LS N+++G +         +  LNLS N +   S       L+ ++SLDL
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 83  SNN 85
            N 
Sbjct: 121 FNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 22  NGSNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
             +N      LDL   ++   V   +G  L +   ++ S N +   +   F  L+ +++L
Sbjct: 14  QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
            ++NNR+          L  L+   ++ N+L  L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 23  GSNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
           G+ L+    +D S N++      P     L++++ L +++N +          L  +  L
Sbjct: 38  GATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 81  DLSNNRLSGQIPAQLIELNFLSNF 104
            L+NN L      +L +L+ L++ 
Sbjct: 94  ILTNNSLV-----ELGDLDPLASL 112

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 17/111 (15%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS-- 88
           L L+ N +   + +      Q   +    +N L       F        LD+S  R+   
Sbjct: 159 LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 89  -GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
                  L +L   S       NL  L          ++        L+ P
Sbjct: 218 PSYGLENLKKLRARST-----YNLKKLPT-------LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
                +++T  +PS++   +    L      L      +FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 92  PAQ----LIELNFLSNFNVSYNNLSGLIPD 117
            A     L +L+ +       NNL  + P+
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLLYINPE 98

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEI-GDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIESLD 81
           S    +  +++S N +   + +++  +L K+  + +   N L    P +F NL  ++ L 
Sbjct: 51  SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110

Query: 82  LSNNRLSGQIPAQL-IELNFLSNFNVSYNNLSGLIPDK 118
           +SN  +   +P    I        ++  N     I   
Sbjct: 111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLD 81
           S +N    + L+ N+L  NV  ++   L+ ++ L L  N ++  +   SF  L  +  L 
Sbjct: 81  SGVNE---ILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

Query: 82  LSNNRLS 88
           L +N+++
Sbjct: 136 LYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNN 85
           L L  N++T  V ++    L  +R+L+L  N ++ ++   +F  L  + +L+L  N
Sbjct: 110 LMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L+ N+ T    + I   L ++R +N S+N ++     +F     +  + L++NRL   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN- 95

Query: 91  IPAQLIE-LNFLSNFNVSYNNLSGLIPDKGQYSTFD 125
           +  ++ + L  L    +  N ++ +  D     +F 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGND-----SFI 126

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDL 82
             L  +  ++ S N++T            +  + L+ N L  ++    F  L+ +++L L
Sbjct: 54  KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLML 112

Query: 83  SNNRLSGQIPA----QLIELNFLS 102
            +NR++  +       L  +  LS
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLS 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
           L L   +        +      +  L+L +  L  S+  +   L  ++ L+LS NR+ G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGG 86

Query: 91  IPAQLIELNFLSNFNVSYNNLSGL 114
           +     +L  L++ N+S N L  +
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 22  NGSNLNYMVGLDLSCNQLT--GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIES 79
             +    +  L L    L    N+P     L K++ L LS N + G +      L  +  
Sbjct: 44  LTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 80  LDLSNNRLSGQIPAQLIELNFLSNF 104
           L+LS N+L       +  L  L   
Sbjct: 100 LNLSGNKLK-----DISTLEPLKKL 119

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDL 82
             L  +  L+LS N++ G +      L  +  LNLS N L   S       L+ ++SLDL
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 83  SNN 85
            N 
Sbjct: 128 FNC 130

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +L  +  L L  N ++    + +  L ++  L L +N ++  I    S L  +++L L 
Sbjct: 106 KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLE 161

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           +N++S  I   L  L  L N  +S N++S L  
Sbjct: 162 DNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L L+ N+LT      + +L+ +  L L  N +   +  S  +LK ++SL L 
Sbjct: 62  QYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLE 117

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           +N +S  I   L+ L  L +  +  N ++ +  
Sbjct: 118 HNGIS-DING-LVHLPQLESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
                 +  +L    +T  V     +L  I  +  +++ +  S+      L  +  L L+
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 73

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            N+L+  I   L  L  L    +  N +  L  
Sbjct: 74  GNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSS 104

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR---LS 88
           L LS N +     S +  ++ +R+L+L  N +   I    +    +E L +S N+   LS
Sbjct: 53  LALSTNNIE--KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS 109

Query: 89  GQIPAQLIELNFLSNFNVSYNNLSGL 114
           G     + +L  L    +S N ++  
Sbjct: 110 G-----IEKLVNLRVLYMSNNKITNW 130

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLD 81
            +LN    L L  N++T  +P  + + L  +++L L+ N ++  +   +F +L  +  L 
Sbjct: 80  RSLNS---LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLS 134

Query: 82  LSNNRLS 88
           L +N+L 
Sbjct: 135 LYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           + L  N +    P      +K+R ++LS+N +S   P +F  L+ + SL L  N+++ ++
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 92  PAQLIE-LNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
           P  L E L  L    ++ N ++ L  D      F +      L L 
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVD-----AFQDLHNLNLLSLY 136

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 54  RVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA----QLIELNFLSNFNVSYN 109
             + L  N +    P +FS  K +  +DLSNN++S ++       L  LN L    +  N
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL---VLYGN 90

Query: 110 NLSGL 114
            ++ L
Sbjct: 91  KITEL 95

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +L  +  L L  N ++    + +  L ++  L L +N ++  I    S L  +++L L 
Sbjct: 109 KDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DIT-VLSRLTKLDTLSLE 164

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           +N++S  I   L  L  L N  +S N++S L  
Sbjct: 165 DNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
                 +  +L    +T  V     +L  I  +  +++ +  S+      L  +  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 76

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLS 112
            N+L+  I   L  L  L    +  N + 
Sbjct: 77  GNKLT-DIKP-LANLKNLGWLFLDENKVK 103

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L L+ N+LT      + +L+ +  L L  N +   +  S  +LK ++SL L 
Sbjct: 65  QYLPNVTKLFLNGNKLT--DIKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE 120

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           +N +S  I   L+ L  L +  +  N ++ +  
Sbjct: 121 HNGIS-DING-LVHLPQLESLYLGNNKITDITV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 19  ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
           ++   +NL  +  L L  N++       + DL+K++ L+L HN +S  I     +L  +E
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLE 137

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           SL L NN+++  I   L  L  L   ++  N +S ++P
Sbjct: 138 SLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP 173

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLDLSNNRLS-- 88
           LDLS N L            +++VL+LS   +  +I   ++ +L  + +L L+ N +   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 89  -GQIPAQLIELNFLSNFNVSYNNLSGL 114
                + L  L  L        NL+ L
Sbjct: 92  ALGAFSGLSSLQKL---VAVETNLASL 115

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIP-RSFSNLKMIESLD 81
            +   +  LDLS  ++   +       L  +  L L+ N +  S+   +FS L  ++ L 
Sbjct: 49  FSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106

Query: 82  LSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS 136
                L+  +       L  L  L   NV++N +      +     F   +   +L LS
Sbjct: 107 AVETNLA-SLENFPIGHLKTLKEL---NVAHNLIQSFKLPE----YFSNLTNLEHLDLS 157

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNN 85
           LDLS N +   +        +++ L L  N L  S+P   F  L  ++ + L  N
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRS--FSNLKMIESLDLSNNRLS 88
           L      L  ++ +   G L+ ++ LN++HN +  S      FSNL  +E LDLS+N++ 
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 89  GQIPAQ----LIELNFLS-NFNVSYNNLSGL 114
             I       L ++  L+ + ++S N ++ +
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L+ +   +   + +     + +     ++ L+LSHN +S  +     +L  +E L ++
Sbjct: 38  KELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVN 93

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
            NRL   +    I    LS   +  N L     
Sbjct: 94  RNRLK-NLNG--IPSACLSRLFLDNNELRDTDS 123

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L   V  +L    +T  V     +L  ++  N  ++ +  S+         ++ L LS
Sbjct: 16  PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLS 71

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 114
           +N++S  +   L +L  L   +V+ N L  L
Sbjct: 72  HNQIS-DLSP-LKDLTKLEELSVNRNRLKNL 100

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
            +L  +  L ++ N+L             +  L L +N L      S  +LK +E L + 
Sbjct: 82  KDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRD--TDSLIHLKNLEILSIR 136

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 116
           NN+L   I   L  L+ L   ++  N ++    
Sbjct: 137 NNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG 167

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 11/85 (12%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 20  LYNGSNLNYMVGLDLSCNQLTGNVPSEIGD---LQKIRVLNLSHNCLSGS----IPRSFS 72
           L++      +  L +   +    V     +   L ++  +++S   L+      +     
Sbjct: 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 73  NLKMIESLDLSNNRLSGQIPAQLIE 97
            +K ++ +++  N LS ++  +L +
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQK 329

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS 88
          L L  NQ T  VP E+ + + + +++LS+N +S    +SFSN+  + +L LS NRL 
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLD 81
            NL     L ++ N+L   +P  + D L  +  L L  N L  S+P   F +L  +  L 
Sbjct: 85  KNLET---LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS 139

Query: 82  LSNNRLSGQIPA----QLIELNFLSNFNVSYNNLSGL 114
           L  N L   +P     +L  L  L    +  N L  +
Sbjct: 140 LGYNELQ-SLPKGVFDKLTSLKELR---LYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNN 85
           L L  NQL   VP    D L +++ L L +N L   +P  +F +L+ ++ L L  N
Sbjct: 162 LRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 32  LDLSCNQLTGNVPSEI-GDLQKIRVLNLSHNCLSGSIPRS-FSNLKMIESLDLSNNRLSG 89
           L L+ N+L   +P+ I  +L+ +  L ++ N L  ++P   F  L  +  L L  N+L  
Sbjct: 66  LYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK- 122

Query: 90  QIPA----QLIELNFLSNFNVSYNNLSGL 114
            +P      L +L +L   ++ YN L  L
Sbjct: 123 SLPPRVFDSLTKLTYL---SLGYNELQSL 148

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLS----GSIPRSFSNLKMIESLDLSNNR 86
           LD+ C +L+    +E+   LQ+ +V+ L    L+      I  +      +  L+L +N 
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 87  LSGQ----IPAQLIELNF-LSNFNVSYNNLS 112
           L       +   L   +  +   ++    L+
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
           LDL  NQLT  +PS + D L  ++ L +  N L+  +PR    L  +  L L  N+L
Sbjct: 93  LDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.5
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.43
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.32
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.3
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.3
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.3
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.3
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.25
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.03
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.33
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.03
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.86
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	92.69
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	90.54

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=9.3e-19  Score=160.39  Aligned_cols=126  Identities=39%  Similarity=0.651  Sum_probs=117.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|||++|.++|.+|..++.+++|+.|++++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCCCCCCCCCCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCNSAEEK  150 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~~~~C~~~~~~  150 (222)
                      |++++|+++|.+|...++..+....+.||+.+|++|.. .|......
T Consensus       709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~  754 (768)
T 3rgz_A          709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNAD  754 (768)
T ss_dssp             EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC--
T ss_pred             EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccC
Confidence            99999999999999989999999999999999998866 88765443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=7.1e-17  Score=126.65  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=97.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|+|++|.+++..|..|.++++|+.|++++|.++...+..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus        53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  132 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL  132 (220)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence            45788899999999998888888888999999999999988666667888899999999999998887888888899999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      |++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus       133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            999999998887764 6678888888999988774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=4.7e-17  Score=127.69  Aligned_cols=114  Identities=16%  Similarity=0.222  Sum_probs=100.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  133 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL  133 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence            46889999999999999877778999999999999999998777888999999999999999999888888889999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      |++++|.+++.+|.. ..+++|+.+++.+|++.|.
T Consensus       134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999999887765 6788899999999998874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=2.3e-16  Score=121.38  Aligned_cols=112  Identities=26%  Similarity=0.279  Sum_probs=103.4

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      -.+.++.|++++|.++ .+|..|..+++|+.|++++|.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|
T Consensus        29 ~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            3468999999999999 777899999999999999999998888899999999999999999998888889999999999


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++++|.++..++.. ..+++|+.+++.+|++.|.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99999999988765 6789999999999999884

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=2.4e-16  Score=121.03  Aligned_cols=112  Identities=21%  Similarity=0.290  Sum_probs=101.8

Q ss_pred             CCcccEEEeecCCCCCCCCh-hccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVPS-EIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ...++.|++++|.+++..+. .|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.|
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            35899999999999977665 48899999999999999998889999999999999999999998888889999999999


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++++|++++.+|.. ..+++|+.+++.+|++.|.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999999987765 6788999999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.66  E-value=6.2e-16  Score=121.95  Aligned_cols=112  Identities=22%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|+|++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL  140 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred             CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence            4566666666666666554555666666666666666666555555666666777777777666 556666666777777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus       141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            77777776665543 4566677777777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.7e-15  Score=114.52  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=103.7

Q ss_pred             CCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc
Q 047563           22 NGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL  101 (222)
Q Consensus        22 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  101 (222)
                      +....++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|
T Consensus        23 p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           23 PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             CTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence            33445799999999999997777788999999999999999997777778999999999999999997777778899999


Q ss_pred             CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      +.|++++|.+++.++.. ..+++|+.+++.+|++.|..
T Consensus       103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999999999888765 66889999999999988743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.3e-15  Score=121.50  Aligned_cols=113  Identities=22%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence            35677777777777777666666777777777777777777666666677777777777777777555555666677777


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      |++++|.+++.++.. ..+++|+.+++.+|.+..
T Consensus       136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            777777776666543 456666666666666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=2.6e-15  Score=116.29  Aligned_cols=113  Identities=20%  Similarity=0.227  Sum_probs=79.2

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            56677777777777775555566677777777777777775555566777777777777777775555556777777777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence            77777777666653 5567777777777776654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.62  E-value=4.4e-16  Score=128.31  Aligned_cols=114  Identities=34%  Similarity=0.575  Sum_probs=100.9

Q ss_pred             ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563           29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  108 (222)
Q Consensus        29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  108 (222)
                      |+.|++++|.+++..|..+..+++|+.|++++|.+++..|. +..+++|+.|++++|++++.+|..+..+++|+.|++++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            78888888888888888888899999999999998866665 78889999999999999989999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcCcccccCccCCCCCCCCCCC
Q 047563          109 NNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSC  144 (222)
Q Consensus       109 N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~~~~C  144 (222)
                      |++++.+|....+++|+.+++.+|+.+|+.|.. .|
T Consensus       278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999998888999999999999999987654 45

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.62  E-value=1.2e-16  Score=147.74  Aligned_cols=108  Identities=26%  Similarity=0.283  Sum_probs=85.4

Q ss_pred             CCcccEEEeecCCCC-----CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563           26 LNYMVGLDLSCNQLT-----GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNF  100 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  100 (222)
                      +++|+.|+|++|.++     +..+..|.++++|+.|++++|.+++..|..|..+++|+.|+|++|++++..|..+.  ++
T Consensus       450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~  527 (844)
T 3j0a_A          450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN  527 (844)
T ss_dssp             CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred             CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence            456666666666665     33345577788888888888888888888888999999999999999876665544  78


Q ss_pred             cCceecccccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          101 LSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       101 L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      |+.|++++|++++.+|..  +.+++.+++.+|++.|.
T Consensus       528 L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          528 LEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE  562 (844)
T ss_dssp             CCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred             ccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccc
Confidence            999999999999888764  56889999999999984

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=3.5e-15  Score=120.41  Aligned_cols=110  Identities=23%  Similarity=0.273  Sum_probs=56.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            44555555555555554444445555555555555555554444445555555555555555554444444455555555


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~  134 (222)
                      ++++|.+++.++.. ..+++|+.+++.+|.+
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            55555555444433 3444455555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.61  E-value=4e-15  Score=121.39  Aligned_cols=111  Identities=24%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++|+.|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus        99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  178 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence            44444444444444444444444444455555555544444444444444555555555555433333344445555555


Q ss_pred             cccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          106 VSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       106 l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      +++|+++..++.......++.+.+.+|++.|
T Consensus       179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            5555555444333344445555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=4e-15  Score=112.07  Aligned_cols=106  Identities=23%  Similarity=0.278  Sum_probs=61.1

Q ss_pred             ccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563           29 MVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  108 (222)
Q Consensus        29 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  108 (222)
                      .+.+++++|.++ .+|..+  .++++.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345666666665 344433  25566666666666655555566666666666666666654444555666666666666


Q ss_pred             ccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          109 NNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       109 N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      |.+++.++.. ..+++|+.+++.+|++.|.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            6666555543 4555666666666665553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.60  E-value=7.3e-15  Score=118.36  Aligned_cols=112  Identities=20%  Similarity=0.213  Sum_probs=74.3

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            46677777777777776555666677777777777777776666666677777777777777765555556666677777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      ++++|.+++.++.. ..+++|+.+++.+|.+..
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            77777666665543 455666666666665443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=9.5e-15  Score=116.45  Aligned_cols=112  Identities=24%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|+|++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            56777777777777666666777777777777777777666666777777777777777777666666677777777777


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      ++|.+++.++.. ..+++|+.+++.+|.+...+
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            777777666654 55677777777777654433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=9.7e-15  Score=115.06  Aligned_cols=115  Identities=23%  Similarity=0.206  Sum_probs=102.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .-.++|+.|+|++|.+++..|..|..+++|+.|++++|.++...+..|..+++|+.|+|++|++++..+..+..+++|+.
T Consensus        37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            34578999999999999988999999999999999999998766778899999999999999999777777899999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++++|.++.++.....+++|+.+++.+|.+...+
T Consensus       117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A          117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             EeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence            99999999977666678899999999999866443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=8.4e-15  Score=110.76  Aligned_cols=105  Identities=17%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             cEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccc
Q 047563           30 VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  109 (222)
Q Consensus        30 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  109 (222)
                      +.+++++|.++ .+|..+.  ++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666665 4444432  55666666666666555666666666666666666666544444556666666666666


Q ss_pred             cCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          110 NLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       110 ~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      .+++.++.. ..+++|+.+++.+|++.|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            666655542 4556666666666665553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=9e-16  Score=117.81  Aligned_cols=116  Identities=24%  Similarity=0.287  Sum_probs=97.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            46899999999999999988999999999999999999999888888999999999999999999999999999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      |++++|++++..+..+....++...+.++...|..|
T Consensus       131 L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             EECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             EEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            999999999876532222223333444454455443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=9.5e-15  Score=114.45  Aligned_cols=114  Identities=20%  Similarity=0.237  Sum_probs=102.8

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      .+.++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|.++++|+.|+|++|+++...+..|..+++|+.|+
T Consensus        31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            36899999999999988888999999999999999999988899999999999999999999966666788999999999


Q ss_pred             cccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      +++|.+++..|.. ..+++|+.+++.+|.+...++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            9999999998776 678999999999998665443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=6e-15  Score=126.80  Aligned_cols=116  Identities=22%  Similarity=0.252  Sum_probs=97.2

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            45788888888888888777888888888888888888888777788888888999999998888777888888888999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      |++++|++++.++.. ..+++|+.+++.+|++.|..+
T Consensus       376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999888877765 678888888888888877544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.57  E-value=3.3e-14  Score=115.90  Aligned_cols=114  Identities=26%  Similarity=0.297  Sum_probs=92.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus        74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence            56778888888888887 66777788888888888888888777778888888888888888888776777788888888


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++++|++++.++.. ..+++|+.+++.+|.+...+
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            888888888877665 56788888888888765443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.55  E-value=2.7e-14  Score=115.16  Aligned_cols=111  Identities=23%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            44444455555544444444444444455555555544444444444444455555555544444343344444455555


Q ss_pred             cccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      +++|.+++.++.. ..+++|+.+++.+|++.|
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            5555444444432 334444444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.54  E-value=8.3e-15  Score=118.73  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  181 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence            34677777777777777666777777777777777777777655566777777777777777777555555677777777


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      |++++|.+++..|.. ..+++|+.+++.+|.+..
T Consensus       182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             EECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            777777777765544 556667777777766543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=1e-14  Score=129.72  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=100.9

Q ss_pred             CCCCcccEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ..++.++.|++++|.+. +..|..|..+++|+.|++++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            35678888899888743 45678899999999999999999988899999999999999999999988888999999999


Q ss_pred             ceecccccCCCCCCCC-CCC-CCcCcccccCccCCCC
Q 047563          103 NFNVSYNNLSGLIPDK-GQY-STFDETSYRGNLYLSC  137 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-~~l-~~l~~l~l~~n~~~c~  137 (222)
                      .|++++|++++.+|.. ..+ ++|+.+++++||+.|.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999998876 444 6899999999999985

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=1.6e-14  Score=128.35  Aligned_cols=110  Identities=23%  Similarity=0.207  Sum_probs=96.3

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|||++|.|++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|+.|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            37899999999999877888999999999999999999777888999999999999999999777778899999999999


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      ++|++++.++.. +.+++|+.+++.+|.+..
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence            999999887764 778889999998887654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.54  E-value=4.6e-14  Score=110.55  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=101.3

Q ss_pred             CCcccEEEeecCCCCCCCC-hhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ...++.|+|++|.+++..+ ..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            4578899999999997755 458899999999999999998888899999999999999999998888889999999999


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      ++++|.+++..|.. ..+++|+.+++.+|.+....+
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            99999999997765 678999999999998665433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.53  E-value=8.5e-14  Score=107.70  Aligned_cols=115  Identities=22%  Similarity=0.219  Sum_probs=101.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ...++++.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            34578999999999999777778899999999999999999777777899999999999999999777777899999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++++|.+++.++.. ..+++|+.+++.+|.+...+
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            999999999988775 67899999999999865433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=3.5e-14  Score=119.10  Aligned_cols=92  Identities=26%  Similarity=0.225  Sum_probs=53.9

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|+|++|.|++..+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|++++..|..|..+++|+.|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            45566666666666665555556666666666666666654444555566666666666666655555555555666666


Q ss_pred             ecccccCCCCCC
Q 047563          105 NVSYNNLSGLIP  116 (222)
Q Consensus       105 ~l~~N~l~~~~p  116 (222)
                      ++++|.+++.++
T Consensus       142 ~L~~N~l~~l~~  153 (361)
T 2xot_A          142 YLSQNQISRFPV  153 (361)
T ss_dssp             ECCSSCCCSCCG
T ss_pred             ECCCCcCCeeCH
Confidence            666665555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=4.9e-14  Score=105.45  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=83.4

Q ss_pred             CCCCcccEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ...++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++.+.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34567888888888887 66677777788888888888887754  6677788888888888888866777777788888


Q ss_pred             ceecccccCCCCC--CCCCCCCCcCcccccCccCCC
Q 047563          103 NFNVSYNNLSGLI--PDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       103 ~L~l~~N~l~~~~--p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      .|++++|.+++.+  +....+++|+.+++.+|++..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence            8888888887754  334667778888888877543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=3.1e-14  Score=104.45  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             CCCcccEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..++++.|++++|.++ +..|..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+|..+..+++|+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4578999999999998 77888889999999999999999865  77889999999999999999778888888999999


Q ss_pred             eecccccCCCCC--CCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLI--PDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~--p~~~~l~~l~~l~l~~n~~~  135 (222)
                      |++++|.+++.+  +....+++|+.+++.+|++.
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            999999998853  34467888999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=6.3e-14  Score=105.47  Aligned_cols=94  Identities=22%  Similarity=0.185  Sum_probs=86.2

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      -.+.|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus        28 ~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence            35789999999999998889999999999999999999998777889999999999999999997777789999999999


Q ss_pred             ecccccCCCCCCCC
Q 047563          105 NVSYNNLSGLIPDK  118 (222)
Q Consensus       105 ~l~~N~l~~~~p~~  118 (222)
                      ++++|++.+.++..
T Consensus       108 ~L~~N~~~c~c~~l  121 (170)
T 3g39_A          108 WLLNNPWDCACSDI  121 (170)
T ss_dssp             ECCSSCBCTTBGGG
T ss_pred             EeCCCCCCCCchhH
Confidence            99999999887644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=1.5e-13  Score=110.64  Aligned_cols=116  Identities=22%  Similarity=0.252  Sum_probs=99.4

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|++++|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY  137 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence            46889999999999999766677788999999999999999777778899999999999999999877788889999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      |++++|.+++.++.. ..+++|+.+++.+|.+...++
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            999999999887764 678899999999887655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.50  E-value=6.6e-14  Score=107.61  Aligned_cols=109  Identities=14%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.++  .++.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.
T Consensus        63 ~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            45778888888888665  2346788888888888888888777888888888888888888888777888888888888


Q ss_pred             eeccccc-CCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNN-LSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~-l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      |++++|. ++.. |....+++|+.+++.+|.+.
T Consensus       141 L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          141 IDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             EECCSCTBCCCC-GGGGGCSSCCEEECTTBCCC
T ss_pred             EEccCCCCcccc-HhhcCCCCCCEEECCCCCCc
Confidence            8888887 5544 44567788888888888754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.50  E-value=1.2e-14  Score=119.67  Aligned_cols=109  Identities=35%  Similarity=0.575  Sum_probs=60.9

Q ss_pred             CCCcccEEEeec-CCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSC-NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ++++|+.|++++ |.+.+..|..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+.+|..+..+++|+.
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            355555566653 5555555555555566666666666555555555555556666666666555555555555555666


Q ss_pred             eecccccCCCCCCCC-CCCC-CcCcccccCcc
Q 047563          104 FNVSYNNLSGLIPDK-GQYS-TFDETSYRGNL  133 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~-~l~~l~l~~n~  133 (222)
                      |++++|.+++..|.. ..+. .|+.+++.+|.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence            666655555444432 3333 45555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.50  E-value=5.3e-14  Score=120.89  Aligned_cols=113  Identities=24%  Similarity=0.266  Sum_probs=100.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.++ .+|. +..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus       182 ~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             TTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             hcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence            45788899999999988 4553 788899999999999999888899999999999999999999888889999999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++++|++++.++.. ..+++|+.+++.+|++.|..
T Consensus       260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             EECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            999999999988776 67889999999999998853

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=9e-14  Score=105.06  Aligned_cols=98  Identities=21%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             eCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563           21 YNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNF  100 (222)
Q Consensus        21 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  100 (222)
                      .+..-.+.|+.|+|++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++
T Consensus        27 iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  106 (174)
T 2r9u_A           27 VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKS  106 (174)
T ss_dssp             CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccC
Confidence            33334579999999999999888999999999999999999999777777899999999999999999766667999999


Q ss_pred             cCceecccccCCCCCCCC
Q 047563          101 LSNFNVSYNNLSGLIPDK  118 (222)
Q Consensus       101 L~~L~l~~N~l~~~~p~~  118 (222)
                      |+.|++++|++.+.++..
T Consensus       107 L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A          107 LTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CSEEECCSSCBCTTBGGG
T ss_pred             CCEEEeCCCCcccccccH
Confidence            999999999999876543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=3.7e-14  Score=115.95  Aligned_cols=114  Identities=23%  Similarity=0.288  Sum_probs=91.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCC-CcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            457788888888888887778888888888888888888875 5677888888888888888888877777888888888


Q ss_pred             ceecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      .|++++|.+++.++.. ..+++|+.+++.+|.+...
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            8888888888776643 5677888888888876543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.48  E-value=8e-14  Score=120.16  Aligned_cols=113  Identities=23%  Similarity=0.214  Sum_probs=101.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+++ .| .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus       193 ~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  270 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE  270 (452)
T ss_dssp             TTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence            467889999999999984 44 4788999999999999999888999999999999999999999888999999999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++++|.+++.++.. ..+++|+.+++.+|++.|..
T Consensus       271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred             EECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence            999999999888776 67889999999999998854

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=8.3e-14  Score=104.19  Aligned_cols=110  Identities=19%  Similarity=0.147  Sum_probs=96.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~  102 (222)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.. +..+..+++|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            4688999999999999966  77899999999999999999778888888999999999999999542 27888999999


Q ss_pred             ceecccccCCCCCC----CCCCCCCcCcccccCccCC
Q 047563          103 NFNVSYNNLSGLIP----DKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       103 ~L~l~~N~l~~~~p----~~~~l~~l~~l~l~~n~~~  135 (222)
                      .|++++|++++.++    ....+++|+.+++.+|...
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999998877    3477889999999888754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.48  E-value=2.9e-13  Score=112.16  Aligned_cols=109  Identities=20%  Similarity=0.288  Sum_probs=70.8

Q ss_pred             CCCcccEEEeecCCCCCCCChhccC---------CcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhh
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGD---------LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQL   95 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~   95 (222)
                      ++++|+.|++++|.+.+..|..+..         +++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l  225 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI  225 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence            4666777777776666666665443         667777777777666 66666666677777777777766 345556


Q ss_pred             hcCcccCceecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563           96 IELNFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus        96 ~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      ..+++|+.|++++|.+.+.+|.. ..+++|+.+++.+|...
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence            66667777777776666665554 55666666666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=1.5e-13  Score=114.41  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=73.1

Q ss_pred             EEEeecC-CCCCCCChhccCCcCCCeEEccC-CcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceeccc
Q 047563           31 GLDLSCN-QLTGNVPSEIGDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  108 (222)
Q Consensus        31 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~  108 (222)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 676 4566 77777777777775 777766666777777777777777777777777777777777777777


Q ss_pred             ccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          109 NNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       109 N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      |+|++.++.......|+.+++.+|++.|.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCC
Confidence            77777666553322377777777777663

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.47  E-value=1.9e-13  Score=110.68  Aligned_cols=114  Identities=22%  Similarity=0.248  Sum_probs=101.5

Q ss_pred             CCCCcccEEEeecCC-CCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQ-LTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      .++++|+.|++++|. ++...|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            468899999999997 8877788899999999999999999988888899999999999999999977777789999999


Q ss_pred             ceecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      .|++++|.+++.++.. ..+++|+.+++.+|.+...
T Consensus       157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             EEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            9999999999887764 6788999999999986543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=1e-13  Score=122.18  Aligned_cols=114  Identities=20%  Similarity=0.293  Sum_probs=90.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      .++++|+.|++++|.+++..|..+..+++|+.|++++|.++ +..|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus       418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  497 (570)
T 2z63_A          418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  497 (570)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence            45677888888888887777777888888888888888876 46777788888888888888888877788888888888


Q ss_pred             ceecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      .|++++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            8888888888877664 6677888888888887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=1.6e-13  Score=115.08  Aligned_cols=115  Identities=23%  Similarity=0.185  Sum_probs=102.6

Q ss_pred             CCCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      -.+.++.|+|++|.+++..+..|. .+++|+.|++++|.+++..+..|..+++|+.|+|++|+++...+..|..+++|+.
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            345789999999999988888887 9999999999999999888888999999999999999999777788999999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      |++++|.+++..+.. ..+++|+.|++.+|.+...+.
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence            999999999987765 678999999999998765443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.46  E-value=5e-14  Score=125.27  Aligned_cols=113  Identities=17%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             CCCcccEEEeecCCCCC-CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTG-NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ++++|+.|++++|.+++ ..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  525 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST  525 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence            34455555555555554 24445555555555555555555555555556666666666666666555555666666666


Q ss_pred             eecccccCCCCCCCCCCCC-CcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYS-TFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~-~l~~l~l~~n~~~c~  137 (222)
                      |++++|+++..++....++ +|+.+++.+|++.|.
T Consensus       526 L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             EECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             EECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence            6666666664444333343 366666666666553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.45  E-value=3.8e-14  Score=108.87  Aligned_cols=93  Identities=27%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|+|++|+++...+..|..+++|+.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            46889999999999999888889999999999999999999888889999999999999999999766667899999999


Q ss_pred             eecccccCCCCCC
Q 047563          104 FNVSYNNLSGLIP  116 (222)
Q Consensus       104 L~l~~N~l~~~~p  116 (222)
                      |++++|++.+...
T Consensus       131 L~L~~N~~~C~c~  143 (193)
T 2wfh_A          131 LAIGANPLYCDCN  143 (193)
T ss_dssp             EECCSSCEECSGG
T ss_pred             EEeCCCCeecCCc
Confidence            9999999987653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=3.6e-13  Score=111.57  Aligned_cols=110  Identities=20%  Similarity=0.278  Sum_probs=97.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            3889999999999999 78888999999999999999998 466678899999999999999988999999999999999


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      ++++|.+.+.+|.. ..+++|+.+++.+|+...
T Consensus       259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             ECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            99999888888765 678889999999987654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.44  E-value=1.8e-13  Score=125.41  Aligned_cols=110  Identities=34%  Similarity=0.492  Sum_probs=62.6

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555666666


Q ss_pred             cccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      +++|.+++.+|.. ..+++|+.+++.+|++.
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            6666655555443 44555666666666544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=3e-13  Score=116.13  Aligned_cols=114  Identities=21%  Similarity=0.224  Sum_probs=104.7

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      .++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++.+..|..+..+++|+.|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            36899999999999999999999999999999999999988899999999999999999999988899999999999999


Q ss_pred             cccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      +++|.+++..|.. ..+++|+.+++.+|.+...++
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCH
Confidence            9999999987765 778999999999998765443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=8.7e-14  Score=102.02  Aligned_cols=105  Identities=18%  Similarity=0.173  Sum_probs=91.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCc-CchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ-IPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~  102 (222)
                      ..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++. .+..+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            4689999999999999966  7789999999999999999977888888899999999999999963 347889999999


Q ss_pred             ceecccccCCCCCC---C-CCCCCCcCccccc
Q 047563          103 NFNVSYNNLSGLIP---D-KGQYSTFDETSYR  130 (222)
Q Consensus       103 ~L~l~~N~l~~~~p---~-~~~l~~l~~l~l~  130 (222)
                      .|++++|.+++.++   . ...+++|+.+++.
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            99999999998876   2 3567778777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.43  E-value=4.9e-13  Score=115.75  Aligned_cols=111  Identities=23%  Similarity=0.207  Sum_probs=99.9

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      .+|+.|++++|.++...+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+..|..+..+++|+.|++
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence            37888889999999655578899999999999999999888888999999999999999999888999999999999999


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++|.+++.++.. ..+++|+.+++.+|++.|.
T Consensus       304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          304 SGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999999987765 6788999999999999885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.42  E-value=2.7e-13  Score=110.82  Aligned_cols=115  Identities=22%  Similarity=0.286  Sum_probs=98.0

Q ss_pred             CCCCcccEEEeecCCCCCCCC-hhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCccc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVP-SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFL  101 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L  101 (222)
                      ..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+ ..|..+..+++|
T Consensus        98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A           98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            358899999999999986655 578899999999999999988888889999999999999999886 478888899999


Q ss_pred             CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      +.|++++|.+++..|.. ..+++|+.+++.+|.+...+
T Consensus       178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            99999999999887665 67888999999998865543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=4.9e-13  Score=119.20  Aligned_cols=111  Identities=19%  Similarity=0.191  Sum_probs=88.5

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++..+..|..+++|+.|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            46788888888888887777788888888888888888887777778888888888888888885555556788888888


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      ++++|.+++.+|.. ..+++|+.+++.+|.+.
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            88888888877754 66778888888877654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.41  E-value=4.1e-13  Score=108.22  Aligned_cols=109  Identities=18%  Similarity=0.211  Sum_probs=55.9

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+..+..+..+++|+.|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            34555555555555554444455555555555555555554444555555555555555555554433345555555555


Q ss_pred             ecccccCCCCC-CCC-CCCCCcCcccccCcc
Q 047563          105 NVSYNNLSGLI-PDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus       105 ~l~~N~l~~~~-p~~-~~l~~l~~l~l~~n~  133 (222)
                      ++++|.+++.. |.. ..+++|+.+++.+|.
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            55555554421 222 344555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=4.1e-13  Score=101.30  Aligned_cols=110  Identities=17%  Similarity=0.115  Sum_probs=89.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++.+|+.|++++|.++. +|......++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..+..+++|+.|
T Consensus        17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            47899999999999994 455333344999999999999854  678899999999999999996655666899999999


Q ss_pred             ecccccCCCCCC--CCCCCCCcCcccccCccCCCC
Q 047563          105 NVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       105 ~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++++|.++..++  ....+++|+.+++.+|++...
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~  128 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  128 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc
Confidence            999999976654  346788899999999986543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.41  E-value=8.1e-13  Score=111.58  Aligned_cols=111  Identities=19%  Similarity=0.191  Sum_probs=86.8

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|+++...+..+..+++|+.|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            46788888888888887777778888888888888888887777778888888888888888884444446778888888


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      ++++|.+++.++.. ..+++|+.+++.+|.+.
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            88888888777654 66777888888777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.40  E-value=8.5e-13  Score=101.34  Aligned_cols=106  Identities=19%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCc-CCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR-LSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~  103 (222)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|+ +. .+| .+..+++|+.
T Consensus        86 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~  163 (197)
T 4ezg_A           86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS  163 (197)
T ss_dssp             TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred             cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence            34455555555555554444444555555555555555544444444555555555555554 33 333 3444555555


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      |++++|.+++.. ....+++|+.+++.+|+
T Consensus       164 L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          164 LNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             EECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            555555554432 22344445555554444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=4.9e-13  Score=121.83  Aligned_cols=110  Identities=28%  Similarity=0.304  Sum_probs=99.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|..+++|+.|+|++|+|+ .+|..+..+++|+.
T Consensus       221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY  297 (727)
T ss_dssp             -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred             ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence            45789999999999999 77777779999999999999999 88999999999999999999999 78999999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      |+|++|.++.+++....+++|+.|++.+|++..
T Consensus       298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            999999999776666889999999999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=6.9e-13  Score=100.05  Aligned_cols=94  Identities=23%  Similarity=0.254  Sum_probs=84.8

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  128 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK  128 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence            46889999999999999777777899999999999999999777778899999999999999999766666788999999


Q ss_pred             eecccccCCCCCCC
Q 047563          104 FNVSYNNLSGLIPD  117 (222)
Q Consensus       104 L~l~~N~l~~~~p~  117 (222)
                      |++++|++.+.+|.
T Consensus       129 L~l~~N~~~~~~~~  142 (177)
T 2o6r_A          129 IWLHTNPWDCSCPR  142 (177)
T ss_dssp             EECCSSCBCCCHHH
T ss_pred             EEecCCCeeccCcc
Confidence            99999999987653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.40  E-value=6.9e-13  Score=114.81  Aligned_cols=111  Identities=19%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+++..|..|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+..|..+..+++|+.
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  132 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS  132 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence            34666677777777766666666666777777777777666555555666677777777777766666666666666777


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~  134 (222)
                      |++++|.+++..+.. ..+++|+.+++.+|.+
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            777666666655543 4555666666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.40  E-value=6.9e-13  Score=106.85  Aligned_cols=110  Identities=23%  Similarity=0.202  Sum_probs=100.0

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            47999999999999887778999999999999999999777788999999999999999999888888999999999999


Q ss_pred             ccccCCCCCCC-CCCCCCcCcccccCccCCC
Q 047563          107 SYNNLSGLIPD-KGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       107 ~~N~l~~~~p~-~~~l~~l~~l~l~~n~~~c  136 (222)
                      ++|.+.+..+. ...+++|+.+++.+|.+..
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccce
Confidence            99999988774 4778999999999998654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.40  E-value=5.4e-13  Score=118.63  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|+|++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            34555555555555444444555555555555555554444444555555555555555555444444555555555555


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~  133 (222)
                      ++|.+++.++.. ..+++|+.+++.+|.
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~  139 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNF  139 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCc
Confidence            555554444222 344444444444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.39  E-value=1e-12  Score=109.53  Aligned_cols=109  Identities=25%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      -.++|+.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus        50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            34578888888888887666678888888888888888887777788888888888888888886555557888888888


Q ss_pred             ecccccCCCCCC--CCCCCCCcCcccccCcc
Q 047563          105 NVSYNNLSGLIP--DKGQYSTFDETSYRGNL  133 (222)
Q Consensus       105 ~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~  133 (222)
                      ++++|.+++.++  ....+++|+.+++.+|.
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            888888887665  23667888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=1.4e-12  Score=107.67  Aligned_cols=112  Identities=15%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.
T Consensus       168 ~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             GGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            35788888888888888 4555443  78888888888888777788888888888888888888777777888888888


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++++|.++..+.....+++|+.+++.+|++...+
T Consensus       245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             EECCCCcCccCChhhccCCCcCEEECCCCcCCccC
Confidence            88888888866555567788888888888765443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.38  E-value=1.1e-12  Score=115.29  Aligned_cols=108  Identities=23%  Similarity=0.190  Sum_probs=80.1

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      .+.|+.|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            35777888888888777777777788888888888887766677777788888888888888766666677778888888


Q ss_pred             cccccCCCC--CCCCCCCCCcCcccccCcc
Q 047563          106 VSYNNLSGL--IPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       106 l~~N~l~~~--~p~~~~l~~l~~l~l~~n~  133 (222)
                      +++|.+++.  ++....+++|+.+++.+|.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCc
Confidence            888877753  2233566777777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=4.3e-13  Score=116.87  Aligned_cols=110  Identities=18%  Similarity=0.136  Sum_probs=73.2

Q ss_pred             CCCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ++++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++..+  ...+++|+.|+|++|++++.. ..+..+++|+.
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~  218 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTW  218 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCccE
Confidence            355666666666666655555554 45666666666666654322  224677777777777777543 34777888888


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      |++++|.+++.++....+++|+.+++.+|++.|+
T Consensus       219 L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             EECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             EEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence            8888888887666556677888888888887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=112.88  Aligned_cols=113  Identities=24%  Similarity=0.321  Sum_probs=63.4

Q ss_pred             CCCCcccEEEeecCCCCC--CCChhccCCcCCCeEEccCCcCCCCcCc-cCCCCCCCCeEEccCCcCCC-----------
Q 047563           24 SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSG-----------   89 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~-----------   89 (222)
                      .++++|+.|++++|.+++  ..|..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++           
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~  424 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK  424 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCC
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCC
Confidence            356677777777777775  3445566777777777777777653443 35555555555555555543           


Q ss_pred             ----------cCchhhhcCcccCceecccccCCCCCCC-CCCCCCcCcccccCccCCC
Q 047563           90 ----------QIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus        90 ----------~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~l~~l~~l~l~~n~~~c  136 (222)
                                .+|..+..+++|+.|++++|+++..++. ...+++|+.+++.+|++.|
T Consensus       425 ~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          425 VLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             EEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence                      3444444555555555555555544333 2344455555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=1.3e-12  Score=112.50  Aligned_cols=104  Identities=16%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ++++.|+|++|.+++..|..|.++++|+.|++++|.+++..|..|.++++|+.|+|++|+++...+..+..+++|+.|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            46667777777777666666667777777777777776666666666777777777777766555555666666777777


Q ss_pred             ccccCCCCCCCC-CCCCCcCccccc
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYR  130 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~  130 (222)
                      ++|.++..++.. ..+++|+.+++.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCC
Confidence            766666554422 333344444333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.37  E-value=1.1e-12  Score=116.63  Aligned_cols=106  Identities=16%  Similarity=0.093  Sum_probs=49.1

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      .++.|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            44444555554444444444444445555554444444444444444444444444444444444444444444444444


Q ss_pred             cccCCCCCCCC-CCCCCcCcccccCcc
Q 047563          108 YNNLSGLIPDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus       108 ~N~l~~~~p~~-~~l~~l~~l~l~~n~  133 (222)
                      +|.+++..+.. ..+++|+.+++.+|.
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCc
Confidence            44444432222 334444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.37  E-value=1.1e-12  Score=116.26  Aligned_cols=107  Identities=22%  Similarity=0.249  Sum_probs=88.7

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      .|+.|+|++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57889999999985 565 888899999999999988 778888899999999999999985 66 78888999999999


Q ss_pred             cccCCCCC-CC-CCCCCCcCcccccCccCCCCCC
Q 047563          108 YNNLSGLI-PD-KGQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       108 ~N~l~~~~-p~-~~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      +|.+++.+ |. ...+++|+.+++.+|++...++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            99998885 44 3778888999999988654443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=5.2e-13  Score=119.91  Aligned_cols=112  Identities=13%  Similarity=0.189  Sum_probs=77.3

Q ss_pred             CCCCcccEEEeecCCCCCC-----------------CChhcc--CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccC
Q 047563           24 SNLNYMVGLDLSCNQLTGN-----------------VPSEIG--DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN   84 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~   84 (222)
                      .++++|+.|+|++|.+++.                 +|..+.  ++++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  282 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC  282 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence            3567777777777777764                 777777  777777777777777777777777777777777777


Q ss_pred             Cc-CCC-cCchhhhcC------cccCceecccccCCCCCC--CCCCCCCcCcccccCccCC
Q 047563           85 NR-LSG-QIPAQLIEL------NFLSNFNVSYNNLSGLIP--DKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus        85 N~-l~~-~~p~~~~~l------~~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~  135 (222)
                      |+ +++ .+|..+..+      ++|+.|++++|.++..++  ....+++|+.+++.+|.+.
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~  343 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE  343 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc
Confidence            77 776 666666655      667777777777663332  2355666666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=3e-13  Score=102.04  Aligned_cols=104  Identities=15%  Similarity=0.121  Sum_probs=89.7

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCch--hhhcCcccCce
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA--QLIELNFLSNF  104 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L  104 (222)
                      ++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++. .+|.  .+..+++|+.|
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            3999999999999965  67899999999999999999665566789999999999999997 5665  78899999999


Q ss_pred             ecccccCCCCCCC----CCCCCCcCcccccCcc
Q 047563          105 NVSYNNLSGLIPD----KGQYSTFDETSYRGNL  133 (222)
Q Consensus       105 ~l~~N~l~~~~p~----~~~l~~l~~l~l~~n~  133 (222)
                      ++++|+++..++.    ...++.|+.+++.+|.
T Consensus       119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999876553    4667888888887775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.36  E-value=1.6e-12  Score=115.62  Aligned_cols=113  Identities=18%  Similarity=0.113  Sum_probs=103.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|++|+|++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.
T Consensus        54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            57899999999999999888999999999999999999999888999999999999999999999776788999999999


Q ss_pred             eecccccCCCCC-CCCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLI-PDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~-p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      |++++|.+++.. |....+++|+.+++.+|.+..
T Consensus       134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A          134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             EECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            999999999854 555568999999999998654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.36  E-value=1.7e-12  Score=116.99  Aligned_cols=110  Identities=23%  Similarity=0.263  Sum_probs=71.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|+|++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|++|++++|++.+..|..+..+++|+.|
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL  126 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence            45666666666666666666666666666777776666664444456666677777777776665555666666677777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~  134 (222)
                      ++++|.+++.++.. ..+++|+.+++.+|.+
T Consensus       127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             ECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            77777666665543 4566666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=1.1e-12  Score=116.27  Aligned_cols=101  Identities=27%  Similarity=0.318  Sum_probs=89.9

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~  102 (222)
                      .++++|+.|+|++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+
T Consensus       460 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence            56889999999999999 789999999999999999999995 67 8999999999999999999776 99999999999


Q ss_pred             ceecccccCCCCCCCCC----CCCCcCcc
Q 047563          103 NFNVSYNNLSGLIPDKG----QYSTFDET  127 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~~----~l~~l~~l  127 (222)
                      .|++++|++++.+|...    .+++|+.+
T Consensus       537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          537 LLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             EEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            99999999999887652    25566555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.36  E-value=2.4e-12  Score=113.73  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             CCCCcccEEEeecCCCCCCC--ChhccCCcCCCeEEccCCcCCCCcCc-cCCCCCCCCeEEccCCcCCCcCchhhhcCcc
Q 047563           24 SNLNYMVGLDLSCNQLTGNV--PSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSGQIPAQLIELNF  100 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  100 (222)
                      .++++|+.|++++|.+++..  |..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++..|..+.  ++
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~  451 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK  451 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence            45778888888888887532  35577778888888888887763443 466666666666666665543333221  34


Q ss_pred             cCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          101 LSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       101 L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      |+.|++++|.++.+++....+++|+.+++.+|.+.
T Consensus       452 L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             CSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred             CCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence            55555555555544333344445555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=6.4e-13  Score=110.49  Aligned_cols=92  Identities=20%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CCCCcccEEEeec-CCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSC-NQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..+..++ |+
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~  106 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ  106 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence            3467899999996 999988889999999999999999999998899999999999999999999976666666665 99


Q ss_pred             ceecccccCCCCCC
Q 047563          103 NFNVSYNNLSGLIP  116 (222)
Q Consensus       103 ~L~l~~N~l~~~~p  116 (222)
                      .|++.+|++.+.+.
T Consensus       107 ~l~l~~N~~~c~c~  120 (347)
T 2ifg_A          107 ELVLSGNPLHCSCA  120 (347)
T ss_dssp             EEECCSSCCCCCGG
T ss_pred             EEEeeCCCccCCCc
Confidence            99999999987653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.36  E-value=3.4e-13  Score=110.82  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=73.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCC-----cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCc--Cchhh-
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDL-----QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ--IPAQL-   95 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~-   95 (222)
                      ..+++|+.|+|++|.+++. |..+..+     ++|+.|++++|.+++..|..|..+++|+.|++++|++.+.  .|..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            4567777777777777755 6655555     6777777777777766667777777777777777776543  23333 


Q ss_pred             -hcCcccCceecccccCCCCCC---CC-CCCCCcCcccccCccCCC
Q 047563           96 -IELNFLSNFNVSYNNLSGLIP---DK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus        96 -~~l~~L~~L~l~~N~l~~~~p---~~-~~l~~l~~l~l~~n~~~c  136 (222)
                       ..+++|+.|++++|.+++...   .. ..+++|+.+++++|.+..
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence             566777777777777763221   11 245677777777776544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.35  E-value=2.4e-12  Score=118.99  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=60.6

Q ss_pred             CCCcccEEEeecCCCCCCC-ChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchh--hhcCccc
Q 047563           25 NLNYMVGLDLSCNQLTGNV-PSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQ--LIELNFL  101 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L  101 (222)
                      ++++|+.|+|++|...+.+ |..|.++++|+.|++++|.+++..|..|.++++|++|+|++|++++..|..  +..+++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            4555555555555333333 455555666666666666655555555666666666666666655444433  5555666


Q ss_pred             CceecccccCCCCCCC--CCCCCCcCcccccCccC
Q 047563          102 SNFNVSYNNLSGLIPD--KGQYSTFDETSYRGNLY  134 (222)
Q Consensus       102 ~~L~l~~N~l~~~~p~--~~~l~~l~~l~l~~n~~  134 (222)
                      +.|++++|.+++..+.  ...+++|+.+++.+|.+
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            6666666665554432  24555566666655553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.35  E-value=2.3e-12  Score=101.68  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             CCCcccEEEeecCC-CCCCCChhccCCcCCCeEEccC-CcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           25 NLNYMVGLDLSCNQ-LTGNVPSEIGDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ++++|+.|++++|. ++...+..|.++++|+.|++++ |.+++..+..|..+++|+.|++++|++++ +|. +..+++|+
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            34455555555553 4444444455555555555554 55543333444555555555555555542 333 44444444


Q ss_pred             ---ceecccc-cCCCCCCCC-CCCCCcC-cccccCccC
Q 047563          103 ---NFNVSYN-NLSGLIPDK-GQYSTFD-ETSYRGNLY  134 (222)
Q Consensus       103 ---~L~l~~N-~l~~~~p~~-~~l~~l~-~l~l~~n~~  134 (222)
                         .|++++| .+++.++.. ..+++|+ .+++.+|.+
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence               4555554 444444332 3344444 454444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=110.34  Aligned_cols=111  Identities=18%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++++|+.|+|++|.++...+..|.++++|+.|++++|.++...+..|..+++|+.|++++|++....+..|..+++|+.|
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            34445555555555544444444455555555555555543333444455555555555555544334444455555555


Q ss_pred             ecccc-cCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          105 NVSYN-NLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       105 ~l~~N-~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      ++++| .+....+.. ..+++|+.+++.+|.+.
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            55542 222222222 44556666666666544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.34  E-value=2.5e-12  Score=106.37  Aligned_cols=105  Identities=19%  Similarity=0.209  Sum_probs=56.5

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      +|+.|++++|.+++ +|..+.  ++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|+++
T Consensus       173 ~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          173 KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD  249 (332)
T ss_dssp             CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence            55555666665553 333322  455555555555555444555555555555555555555444455555555555555


Q ss_pred             cccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          108 YNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       108 ~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      +|.++..++....+++|+.+++.+|++.
T Consensus       250 ~N~l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          250 NNKLSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             SSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCcCeecChhhhcCccCCEEECCCCCCC
Confidence            5555544333344555555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=114.71  Aligned_cols=105  Identities=27%  Similarity=0.305  Sum_probs=73.7

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|+.|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            57777777777777666667777777777777777777666777777777777777777777 45554  6677777777


Q ss_pred             ccccCCCC-CCCC-CCCCCcCcccccCccC
Q 047563          107 SYNNLSGL-IPDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus       107 ~~N~l~~~-~p~~-~~l~~l~~l~l~~n~~  134 (222)
                      ++|.+++. .|.. +.+++|+.+++.+|.+
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             cCCccccccchhhhccCCcceEEEecCccc
Confidence            77777763 3332 5666777777666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.33  E-value=4.3e-12  Score=113.98  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             CCCcccEEEeecCCCCCCCCh-hccCC-------cCCCeEEccCCcCCCCcCccCC--CCCCCCeEEccCCcCCCcCchh
Q 047563           25 NLNYMVGLDLSCNQLTGNVPS-EIGDL-------QKIRVLNLSHNCLSGSIPRSFS--NLKMIESLDLSNNRLSGQIPAQ   94 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~-~~~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~   94 (222)
                      .+++|+.|+|++|.++ .+|. .+...       ++|+.|++++|.++ .+|..+.  .+++|+.|++++|++++ +|..
T Consensus       455 ~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~  531 (636)
T 4eco_A          455 TGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ  531 (636)
T ss_dssp             TTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             cCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence            3566777777777776 3333 22222       26677777777766 5555554  66677777777777764 6666


Q ss_pred             hhcCcccCceec------ccccCCCCCCCC-CCCCCcCcccccCccC
Q 047563           95 LIELNFLSNFNV------SYNNLSGLIPDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus        95 ~~~l~~L~~L~l------~~N~l~~~~p~~-~~l~~l~~l~l~~n~~  134 (222)
                      +..+++|+.|++      ++|.+.+.+|.. ..+++|+.+++.+|.+
T Consensus       532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            666667777766      345555555544 5566666666666665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.33  E-value=1.8e-12  Score=102.37  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=95.5

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCCCcCccCCCCCCCCeEEccC-CcCCCcCchhhhcCcccCc
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSGSIPRSFSNLKMIESLDLSN-NRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~  103 (222)
                      .+.++.|++++|.+++..+..|..+++|+.|++++|. ++...+..|..+++|+.|++++ |++++..+..|..+++|+.
T Consensus        30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            4589999999999998778789999999999999997 8866677899999999999998 9999777788999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcC---cccccCc-cCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFD---ETSYRGN-LYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~---~l~l~~n-~~~  135 (222)
                      |++++|.+++.+ ....+++++   .+++.+| .+.
T Consensus       110 L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          110 LGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             EEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCC
T ss_pred             EeCCCCCCcccc-ccccccccccccEEECCCCcchh
Confidence            999999999854 466677777   8999998 543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.33  E-value=2.3e-12  Score=108.79  Aligned_cols=116  Identities=15%  Similarity=0.130  Sum_probs=103.2

Q ss_pred             CCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        23 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ...+++++.|++++|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.+..|..+..+++|+
T Consensus        41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            34578999999999999966666688999999999999999977778999999999999999999988888899999999


Q ss_pred             ceecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      .|++++|.++..++.. ..+++|+.+++.+|.+...+
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            9999999999887775 67899999999999865443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.32  E-value=7.4e-12  Score=103.35  Aligned_cols=113  Identities=20%  Similarity=0.361  Sum_probs=90.5

Q ss_pred             CCCCcccEEEeecCCCCC--CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc
Q 047563           24 SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL  101 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  101 (222)
                      .++++|+.|++++|.++.  ..+..+..+++|+.|++++|.++ .+|..+.  ++|+.|++++|++++..|..+..+++|
T Consensus       142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  218 (330)
T 1xku_A          142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL  218 (330)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred             cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence            457888999999998863  66777888889999999998887 4555443  788899999999887778888888899


Q ss_pred             CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      +.|++++|.+++.++.. ..+++|+.+++.+|.+...+.
T Consensus       219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence            99999999888877654 667888888888888665444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.32  E-value=1.8e-12  Score=106.66  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             CCcccEEEeecCCCCCCCChhcc-CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIG-DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      +++|+.|++++|.+++..+..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|++++ +|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L  219 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence            44555555555555544444332 445555555555555432 21 1235566666666666663 33345666666666


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      ++++|.+++.++....+++|+.+++.+|++.|
T Consensus       220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             ECTTSCCCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred             ECcCCcccchhhHhhcCCCCCEEEccCCCccC
Confidence            66666666554444555666666666666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.32  E-value=1.9e-12  Score=107.96  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc-hhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP-AQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~  102 (222)
                      .++++|+.|++++|.+++..|..|.++++|+.|++++|.+++..+..|..+++|+.|++++|+++...+ ..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            456777777777777776666677777777777777777775444457777777777777777773332 3566677777


Q ss_pred             ceecccc-cCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          103 NFNVSYN-NLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       103 ~L~l~~N-~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      .|++++| .+....+.. ..+++|+.+++.+|.+.
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            7777776 355554433 45666666666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.31  E-value=5.1e-12  Score=113.84  Aligned_cols=111  Identities=18%  Similarity=0.193  Sum_probs=101.0

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|+|++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|++++|+++...+..|..+++|+.|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            68999999999999888888999999999999999999888999999999999999999999665567999999999999


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++|.+++.+|.. ..+++|+.+++.+|.+...
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  136 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSST  136 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCccccc
Confidence            999999888765 7889999999999976543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=1.4e-12  Score=120.68  Aligned_cols=110  Identities=19%  Similarity=0.231  Sum_probs=60.0

Q ss_pred             CCCcccEEEeecCCCCC-----------------CCChhcc--CCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC
Q 047563           25 NLNYMVGLDLSCNQLTG-----------------NVPSEIG--DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN   85 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N   85 (222)
                      ++++|+.|+|++|.+++                 .+|..++  ++++|+.|++++|.+.+.+|..|..+++|+.|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            45566666666666665                 2555554  6666666666666665566666666666666666666


Q ss_pred             c-CCC-cCchhhhcCc-------ccCceecccccCCCCCC--CCCCCCCcCcccccCccC
Q 047563           86 R-LSG-QIPAQLIELN-------FLSNFNVSYNNLSGLIP--DKGQYSTFDETSYRGNLY  134 (222)
Q Consensus        86 ~-l~~-~~p~~~~~l~-------~L~~L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~  134 (222)
                      + +++ .+|..+..++       +|+.|++++|.++.+++  ....+++|+.+++.+|.+
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l  585 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV  585 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc
Confidence            5 555 4555444443       55555555555552222  124444555555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=3.3e-12  Score=113.78  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=105.1

Q ss_pred             CCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        23 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      .-.++.++.+++++|.++...+..|..+++|+.|++++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|+
T Consensus        47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            34568899999999999977777788999999999999999988888999999999999999999988888899999999


Q ss_pred             ceecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          103 NFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      .|++++|.+++.++.. ..+++|+.+++.+|.+...++
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            9999999999988876 789999999999998655443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.30  E-value=2.8e-12  Score=112.59  Aligned_cols=112  Identities=16%  Similarity=0.135  Sum_probs=90.4

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCC-cCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-QIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~  102 (222)
                      .++++|++|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++++ ..|..+..+++|+
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            568899999999999998888889999999999999999987777778899999999999999875 3466788888888


Q ss_pred             ceecccccC-CCCCCC-CCCCCCcCcccccCccCC
Q 047563          103 NFNVSYNNL-SGLIPD-KGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       103 ~L~l~~N~l-~~~~p~-~~~l~~l~~l~l~~n~~~  135 (222)
                      .|++++|.+ ...++. ...+++|+.+++.+|.+.
T Consensus       127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A          127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             EEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            899888874 434333 366777888888777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.30  E-value=6.2e-12  Score=104.30  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=72.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..+  +..+++|+.|++++|.++..  ..+..+++|+.|++++|++++.  ..+..+++|+.
T Consensus       218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~  291 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS  291 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence            456777777777777774333  66777777777777777642  3466777777777777777643  34666777777


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      |++++|.+++..+.. ..+++|+.+++.+|++...
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            777777776665543 4566777777777765443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.30  E-value=6.9e-12  Score=110.43  Aligned_cols=106  Identities=23%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      .++.|++++|.+++..+..|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            44555555555554444445555555555555555544444445555555555555555544444444455555555555


Q ss_pred             cccCCCCCCC-CCCCCCcCcccccCcc
Q 047563          108 YNNLSGLIPD-KGQYSTFDETSYRGNL  133 (222)
Q Consensus       108 ~N~l~~~~p~-~~~l~~l~~l~l~~n~  133 (222)
                      +|.+++.++. ...+++|+.+++.+|.
T Consensus       109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~  135 (570)
T 2z63_A          109 ETNLASLENFPIGHLKTLKELNVAHNL  135 (570)
T ss_dssp             TSCCCCSTTCSCTTCTTCCEEECCSSC
T ss_pred             ccccccCCCccccccccccEEecCCCc
Confidence            5544444332 2344444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=6.1e-12  Score=103.29  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=92.2

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCC--cCccC--CCCCCCCeEEccCCcCCCc--Cc-hhhhcCc
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS--IPRSF--SNLKMIESLDLSNNRLSGQ--IP-AQLIELN   99 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~   99 (222)
                      ++|++|++++|.+++..|..|..+++|+.|++++|.+.+.  .|..+  ..+++|+.|++++|++++.  .+ ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            8999999999999988889999999999999999998755  33344  8899999999999999832  12 3445779


Q ss_pred             ccCceecccccCCCCCCC--CCCCCCcCcccccCccCCCC
Q 047563          100 FLSNFNVSYNNLSGLIPD--KGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~--~~~l~~l~~l~l~~n~~~c~  137 (222)
                      +|+.|++++|.+++.+|.  ...+++|+.+++++|.+...
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i  268 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV  268 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence            999999999999997743  35678999999999986643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.29  E-value=4.5e-12  Score=112.00  Aligned_cols=107  Identities=25%  Similarity=0.278  Sum_probs=89.9

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      .++++.|++++|.+++..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|+.|+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            468999999999999877788999999999999999999878888999999999999999998 56655  788999999


Q ss_pred             cccccCCCCC-CC-CCCCCCcCcccccCccCC
Q 047563          106 VSYNNLSGLI-PD-KGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       106 l~~N~l~~~~-p~-~~~l~~l~~l~l~~n~~~  135 (222)
                      +++|.+++.. |. ...+++|+.+++++|.+.
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccc
Confidence            9999988754 33 367888888888888754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.29  E-value=9e-12  Score=102.95  Aligned_cols=104  Identities=23%  Similarity=0.287  Sum_probs=54.9

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      +.++.|++++|.+++..|..|.++++|+.|++++|.+++..|..|..+++|+.|++++|++. .+|..+.  ++|+.|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            45556666666666555555566666666666666665555555666666666666666555 3333222  44555555


Q ss_pred             ccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563          107 SYNNLSGLIPDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus       107 ~~N~l~~~~p~~-~~l~~l~~l~l~~n~  133 (222)
                      ++|.+++.++.. ..+++|+.+++.+|.
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCc
Confidence            555554444332 334444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.28  E-value=4.8e-12  Score=103.84  Aligned_cols=102  Identities=25%  Similarity=0.413  Sum_probs=47.6

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|++++|.+++ .+. +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++ ++. +..+++|+.|
T Consensus       105 ~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL  178 (308)
T ss_dssp             TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred             CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence            35555555555555553 222 4555555555555555543222  4444555555555555542 222 4444444444


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      ++++|.+++..+ ...+++|+.+++++|.
T Consensus       179 ~l~~n~l~~~~~-l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          179 KADDNKISDISP-LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             ECCSSCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred             ECCCCccCcChh-hcCCCCCCEEEccCCc
Confidence            444444444332 2333444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=101.41  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCC--c--CccCCCCCCCCeEEccCCcCCCcCch----hhhc
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGS--I--PRSFSNLKMIESLDLSNNRLSGQIPA----QLIE   97 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~   97 (222)
                      +++|+.|+|++|.+++..|..|..+++|+.|++++|.+.+.  .  +..+..+++|+.|++++|+++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            56677777777777666666677777777777777766532  1  122356667777777777775 3333    2456


Q ss_pred             CcccCceecccccCCCCCCCC-CCC---CCcCcccccCccCCCCC
Q 047563           98 LNFLSNFNVSYNNLSGLIPDK-GQY---STFDETSYRGNLYLSCP  138 (222)
Q Consensus        98 l~~L~~L~l~~N~l~~~~p~~-~~l---~~l~~l~l~~n~~~c~~  138 (222)
                      +++|+.|++++|.+++..|.. ..+   ++|+.+++.+|.+...+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence            788888888888888875433 333   57888888888766433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=2.2e-11  Score=99.19  Aligned_cols=82  Identities=29%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++|+.|++++|.+++..+  +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++ + ..+..+++|+.|+
T Consensus        67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY  140 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEE
T ss_pred             CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEE
Confidence            4455555555555553222  4444455555555544442 11 24444444444444444442 1 2233444444444


Q ss_pred             cccccCCC
Q 047563          106 VSYNNLSG  113 (222)
Q Consensus       106 l~~N~l~~  113 (222)
                      +++|.+++
T Consensus       141 l~~n~l~~  148 (291)
T 1h6t_A          141 LGNNKITD  148 (291)
T ss_dssp             CCSSCCCC
T ss_pred             ccCCcCCc
Confidence            44444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.26  E-value=1e-11  Score=101.18  Aligned_cols=105  Identities=26%  Similarity=0.373  Sum_probs=69.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++ .| .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.
T Consensus        87 ~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  160 (291)
T 1h6t_A           87 ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  160 (291)
T ss_dssp             TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             ccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence            456777777777777774 33 367777777777777777643  3466677777777777777643  45666677777


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      |++++|.+++..+ ...+++|+.+++++|.+.
T Consensus       161 L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            7777777766554 455666666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=4.9e-12  Score=117.11  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=90.4

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCC-CcCccCCCCC-------CCCeEEccCCcCCCcCch--
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSG-SIPRSFSNLK-------MIESLDLSNNRLSGQIPA--   93 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--   93 (222)
                      ++++|+.|+|++|.+.+.+|..+.++++|+.|++++|. +++ .+|..+..+.       +|+.|++++|+++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            68899999999999999999999999999999999998 887 6776555444       8899999999888 7777  


Q ss_pred             hhhcCcccCceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563           94 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus        94 ~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      .+..+++|+.|++++|.++ .+|....+++|+.+++.+|.+.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc
Confidence            8888888888888888888 4455567777888888877755

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.25  E-value=2.5e-11  Score=97.45  Aligned_cols=107  Identities=24%  Similarity=0.288  Sum_probs=57.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC-------------------ccCCCCCCCCeEEccCC
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-------------------RSFSNLKMIESLDLSNN   85 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-------------------~~~~~l~~L~~L~Ls~N   85 (222)
                      .+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+                   ..+..+++|+.|++++|
T Consensus        61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N  138 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN  138 (263)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTS
T ss_pred             hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCChhhcCcccccEEECCCC
Confidence            45666666777666664333  6666666666666666653211                   12444555555555555


Q ss_pred             cCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563           86 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus        86 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      ++++ ++ .+..+++|+.|++++|.+++. +....+++|+.+++.+|++.+
T Consensus       139 ~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          139 KLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             cCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence            5553 22 345555555555555555554 333445555555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.25  E-value=5.2e-12  Score=103.94  Aligned_cols=110  Identities=17%  Similarity=0.124  Sum_probs=74.3

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccC-CCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSF-SNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|++++. |. ...+++|+.
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~  195 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKT  195 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCE
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCE
Confidence            45667777777777776656666677777777777777776555554 3567777777777777643 32 224677777


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      |++++|.+++.++....+++|+.+++++|.+..
T Consensus       196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             EECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence            777777777766665666777777777776554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.25  E-value=9.9e-12  Score=101.88  Aligned_cols=112  Identities=12%  Similarity=0.019  Sum_probs=60.3

Q ss_pred             CCCcccEEEeecCCCCCCCC----hhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCc--C--chhhh
Q 047563           25 NLNYMVGLDLSCNQLTGNVP----SEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ--I--PAQLI   96 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~   96 (222)
                      .+++|+.|+|++|.+++..+    ..+..+++|+.|++++|.+.+..|..|..+++|++|++++|++.+.  +  +..+.
T Consensus       115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH  194 (310)
T ss_dssp             CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred             cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence            45556666666666654333    2233455666666666666555555666666666666666665431  1  11124


Q ss_pred             cCcccCceecccccCCCCCCC----CCCCCCcCcccccCccCCC
Q 047563           97 ELNFLSNFNVSYNNLSGLIPD----KGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus        97 ~l~~L~~L~l~~N~l~~~~p~----~~~l~~l~~l~l~~n~~~c  136 (222)
                      .+++|+.|++++|.++...+.    ...+++|+.+++++|.+..
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence            555666666666666533221    1234566666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.25  E-value=2.7e-11  Score=99.31  Aligned_cols=102  Identities=25%  Similarity=0.346  Sum_probs=47.6

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++|+.|++++|.+++ .+ .+..+++|+.|++++|.+++. +. +..+++|+.|++++|++++. +. +..+++|+.|+
T Consensus        84 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           84 LTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS  157 (308)
T ss_dssp             CCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred             CCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence            4444444444444442 11 344444444444444444422 21 44455555555555555432 22 44555555555


Q ss_pred             cccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          106 VSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       106 l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      +++|.+++..+ ...+++|+.+++.+|.+
T Consensus       158 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          158 IGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             ccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            55555554433 34455555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.23  E-value=2e-11  Score=109.07  Aligned_cols=105  Identities=24%  Similarity=0.365  Sum_probs=63.5

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|+|++|.+++ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+..|  +..+++|+.|
T Consensus       107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L  180 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  180 (605)
T ss_dssp             TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence            45556666666666553 2 2355566666666666666533  445666666666666666664444  6666677777


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      ++++|.+++. +....+++|+.|++.+|++..
T Consensus       181 ~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          181 YLSKNHISDL-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred             ECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence            7777766664 344556667777777766443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.22  E-value=2.7e-11  Score=97.28  Aligned_cols=102  Identities=21%  Similarity=0.287  Sum_probs=73.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+++..+  +..+++|+.|++++|++++ +|.. .. ++|+.
T Consensus        38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~  110 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSR  110 (263)
T ss_dssp             HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCE
T ss_pred             hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccE
Confidence            45789999999999999 455 68899999999999999996555  8899999999999999885 3322 12 55555


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      |++++|.+++. +....+++|+.+++++|.
T Consensus       111 L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~  139 (263)
T 1xeu_A          111 LFLDNNELRDT-DSLIHLKNLEILSIRNNK  139 (263)
T ss_dssp             EECCSSCCSBS-GGGTTCTTCCEEECTTSC
T ss_pred             EEccCCccCCC-hhhcCcccccEEECCCCc
Confidence            55555555543 223344455555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.18  E-value=5.1e-11  Score=106.41  Aligned_cols=105  Identities=27%  Similarity=0.396  Sum_probs=67.8

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|++++.  ..+..+++|+.
T Consensus        84 ~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  157 (605)
T 1m9s_A           84 TNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT  157 (605)
T ss_dssp             GGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred             ccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCE
Confidence            345566666666666653 22 45666666666666666663 2 3456667777777777777643  45667777777


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      |++++|.+++.+| ...+++|+.|++.+|.+.
T Consensus       158 L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          158 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             EECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            7777777777665 556777777777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.16  E-value=6.2e-11  Score=102.42  Aligned_cols=103  Identities=27%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  335 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR  335 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence            345566666666666653322  4555555555555555553332  4445555555555555553332  344444555


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      |++++|.+++. +....+++|+.+++.+|+
T Consensus       336 L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          336 LFFYNNKVSDV-SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             EECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred             eECCCCccCCc-hhhccCCCCCEEeCCCCc
Confidence            55555444443 222334444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.14  E-value=4.7e-11  Score=103.99  Aligned_cols=114  Identities=18%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCC-CCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFS-NLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ..+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|+
T Consensus       117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  194 (487)
T 3oja_A          117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLK  194 (487)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCC
T ss_pred             cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCC
Confidence            3466778888888888877777777888888888888888877777665 678888888888888754 32 23578888


Q ss_pred             ceecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563          103 NFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      .|++++|.+++.+|....+++|+.+++.+|.+...|.
T Consensus       195 ~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             EEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch
Confidence            8888888888887776777888888888887654333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.13  E-value=8.4e-11  Score=97.41  Aligned_cols=104  Identities=21%  Similarity=0.354  Sum_probs=64.4

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++ + +.+..+++|+.
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~  269 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKM  269 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCE
T ss_pred             cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCE
Confidence            345666677777776664333  5666667777777776664333  6666677777777776663 2 34566666777


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      |++++|.+++. +....+++|+.+++.+|.+
T Consensus       270 L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          270 LNVGSNQISDI-SVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             EECCSSCCCCC-GGGGGCTTCSEEECCSSCC
T ss_pred             EEccCCccCCC-hhhcCCCCCCEEECcCCcC
Confidence            77777766654 3334556666666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.13  E-value=1.4e-10  Score=100.25  Aligned_cols=103  Identities=26%  Similarity=0.461  Sum_probs=55.2

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|+.|
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            34555556666665553332  5555556666666655553332  4555556666666665553322  4555556666


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      ++++|.+++..| ...+++|+.+++.+|.+
T Consensus       315 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          315 TLYFNNISDISP-VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             ECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred             ECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence            666665555544 33455555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=5.1e-13  Score=102.70  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=90.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|
T Consensus        46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            47889999999999985 66 7888999999999999998 677777778899999999999985 45 68888999999


Q ss_pred             ecccccCCCCCC--CCCCCCCcCcccccCccCCCC
Q 047563          105 NVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       105 ~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++++|.++...+  ....+++|+.+++.+|++.+.
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            999999987543  336788899999999987554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.09  E-value=2e-10  Score=104.67  Aligned_cols=111  Identities=21%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             cccEEEeecCCCCC---------CCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcC
Q 047563           28 YMVGLDLSCNQLTG---------NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIEL   98 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~---------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l   98 (222)
                      .++.++|+.|.+.+         ..|..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|+++ .+|..+..+
T Consensus       192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            44455555555543         44778899999999999999998 77777779999999999999999 889999999


Q ss_pred             cccCceecccccCCCCCCCCCCCCCcCcccccCccCCCCCCC
Q 047563           99 NFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTI  140 (222)
Q Consensus        99 ~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~  140 (222)
                      ++|+.|+|++|.++.++.....+++|+.|++.+|.+...|..
T Consensus       270 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~  311 (727)
T 4b8c_D          270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE  311 (727)
T ss_dssp             TTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS
T ss_pred             CCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh
Confidence            999999999999996655557899999999999987655443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.09  E-value=3.3e-10  Score=94.39  Aligned_cols=108  Identities=16%  Similarity=0.086  Sum_probs=84.0

Q ss_pred             EEEEEECCcEeeeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC-ccCCCCCCCCe-EEccCCc
Q 047563            9 KVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP-RSFSNLKMIES-LDLSNNR   86 (222)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~Ls~N~   86 (222)
                      ++.+..++..++..+ -.++++.|+|++|.|+...+..|.++++|+.|++++|.+.+.+| ..|.++++++. +.++.|+
T Consensus        13 ~v~C~~~~Lt~iP~~-l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           13 VFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEEESTTCCSCCTT-CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEEecCCCCCccCcC-cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            445555555544332 23689999999999996666789999999999999999865555 56888888765 6677899


Q ss_pred             CCCcCchhhhcCcccCceecccccCCCCCCC
Q 047563           87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  117 (222)
Q Consensus        87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~  117 (222)
                      ++...|+.|..+++|+.|++++|.++..++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             ccccCchhhhhccccccccccccccccCCch
Confidence            9977788889999999999999998876553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.06  E-value=2.4e-10  Score=101.26  Aligned_cols=100  Identities=22%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc---
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL---  101 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L---  101 (222)
                      .+++|+.|+|++|.+++ +|.   .+++|+.|++++|.+++ +|. |.  ++|+.|++++|+|+ .+|. +..  +|   
T Consensus       138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~  205 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHS  205 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------
T ss_pred             cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence            45556666666666664 333   34566666666666664 444 43  66666666666666 4444 333  45   


Q ss_pred             ----CceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          102 ----SNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       102 ----~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                          +.|++++|.++.+++....+++|+.+++.+|++.+
T Consensus       206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence                66777777776654444556667777777776543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.03  E-value=6.2e-10  Score=96.16  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|++++|.+++. |  +..+++|+.|++++|.+++. |  +..+++|+.|++++|++++ +|  +..+++|+.|
T Consensus        62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L  132 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL  132 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred             ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence            345555566666655543 2  55555666666666655532 2  5555666666666666653 23  5555666666


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCcc
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNL  133 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~  133 (222)
                      ++++|.+++.  ....++.|+.+++.+|.
T Consensus       133 ~l~~N~l~~l--~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          133 NCARNTLTEI--DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             ECTTSCCSCC--CCTTCTTCCEEECTTCS
T ss_pred             ECCCCcccee--ccccCCcCCEEECCCCC
Confidence            6666666554  13445556666665553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.00  E-value=1.8e-09  Score=95.64  Aligned_cols=97  Identities=23%  Similarity=0.278  Sum_probs=52.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|+|++|.+++ +|. +.+  +|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|.   .+++|+.|
T Consensus        98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L  165 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL  165 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred             ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence            34455555555555553 333 333  55555555555553 333   34556666666666653 343   34566666


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      ++++|.+++.++ ..  ++|+.+++.+|.+..
T Consensus       166 ~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          166 SVRNNQLTFLPE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             ECCSSCCSCCCC-CC--TTCCEEECCSSCCSS
T ss_pred             ECCCCCCCCcch-hh--CCCCEEECcCCCCCc
Confidence            666666666433 22  566666676666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.99  E-value=1.8e-09  Score=93.29  Aligned_cols=99  Identities=20%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +++|+.|++++|.+++. | .+..+++|+.|++++|.+++. |  +..+++|+.|++++|++++. |  +..+++|+.|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            45556666666665543 3 355556666666666655532 2  55555666666666665532 2  45555666666


Q ss_pred             cccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          106 VSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       106 l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      +++|.+++. + ...+++|+.+++.+|.+
T Consensus       113 L~~N~l~~l-~-~~~l~~L~~L~l~~N~l  139 (457)
T 3bz5_A          113 CDTNKLTKL-D-VSQNPLLTYLNCARNTL  139 (457)
T ss_dssp             CCSSCCSCC-C-CTTCTTCCEEECTTSCC
T ss_pred             CCCCcCCee-c-CCCCCcCCEEECCCCcc
Confidence            666655553 2 34455555555555553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.97  E-value=4.3e-12  Score=97.47  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=91.7

Q ss_pred             CCcccEEEeecCCCCCCCCh------hccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCc
Q 047563           26 LNYMVGLDLSCNQLTGNVPS------EIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELN   99 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~   99 (222)
                      ...++.++++.+.+++..|.      .+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            45677778888888877776      89999999999999999985 66 8889999999999999999 6788888889


Q ss_pred             ccCceecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          100 FLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       100 ~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      +|+.|++++|.+++.+ ....+++|+.+++.+|.+..
T Consensus        94 ~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           94 TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC
T ss_pred             cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc
Confidence            9999999999999853 44667889999999997543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=2.1e-10  Score=95.95  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             CcccEEEeecCCCCCCCC----hhccCCc-CCCeEEccCCcCCCCcCccCCCC-----CCCCeEEccCCcCCCcCchhhh
Q 047563           27 NYMVGLDLSCNQLTGNVP----SEIGDLQ-KIRVLNLSHNCLSGSIPRSFSNL-----KMIESLDLSNNRLSGQIPAQLI   96 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~   96 (222)
                      ++|+.|+|++|.++...+    ..+..++ +|+.|++++|.+++..+..+..+     ++|+.|++++|++++..+..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            346666666666664444    4555555 56666666666655444444443     5566666666666544444333


Q ss_pred             cC-----cccCceecccccCCCCC
Q 047563           97 EL-----NFLSNFNVSYNNLSGLI  115 (222)
Q Consensus        97 ~l-----~~L~~L~l~~N~l~~~~  115 (222)
                      ..     ++|+.|++++|.+++..
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHHHhCCCCccEEECcCCcCCcHH
Confidence            32     55666666666655443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.88  E-value=8e-11  Score=97.05  Aligned_cols=107  Identities=19%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CCcccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC-cCCCc-CchhhhcCcccC
Q 047563           26 LNYMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN-RLSGQ-IPAQLIELNFLS  102 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~  102 (222)
                      +++|+.|++++|.+++. .|..+..+++|+.|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            55666666666666543 5555666666666666666665555555666666666666666 45431 344455566666


Q ss_pred             ceecccc-cCCCC-CCC-CCCCC-CcCcccccCc
Q 047563          103 NFNVSYN-NLSGL-IPD-KGQYS-TFDETSYRGN  132 (222)
Q Consensus       103 ~L~l~~N-~l~~~-~p~-~~~l~-~l~~l~l~~n  132 (222)
                      .|++++| .+++. .+. ...++ +|+.+++.+|
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            6666666 55432 111 12334 4555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.87  E-value=1.4e-10  Score=97.81  Aligned_cols=112  Identities=13%  Similarity=0.203  Sum_probs=75.6

Q ss_pred             CCCcccEEEeecCCCCC-----CCChhccCCcCCCeEEccCCcCC----CCcCccCCCCCCCCeEEccCCcCCCc----C
Q 047563           25 NLNYMVGLDLSCNQLTG-----NVPSEIGDLQKIRVLNLSHNCLS----GSIPRSFSNLKMIESLDLSNNRLSGQ----I   91 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~   91 (222)
                      .+++|+.|++++|.++.     ..|..+..+++|+.|++++|.++    ..+|..+..+++|+.|++++|++++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            35677777777777762     23335667777888888888774    45666777777888888888887754    3


Q ss_pred             chhhhc--CcccCceecccccCCC----CCCCC--CCCCCcCcccccCccCCC
Q 047563           92 PAQLIE--LNFLSNFNVSYNNLSG----LIPDK--GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus        92 p~~~~~--l~~L~~L~l~~N~l~~----~~p~~--~~l~~l~~l~l~~n~~~c  136 (222)
                      |..+..  +++|+.|++++|.+++    ..|..  ..+++|+.+++.+|++..
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            455533  7778888888888776    23322  335777888888877554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.87  E-value=6.9e-09  Score=92.89  Aligned_cols=77  Identities=25%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCccccc
Q 047563           51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYR  130 (222)
Q Consensus        51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~  130 (222)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++|.++.+++....+++|+.+++.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            456666666666653 33   34466777777777776 4444   4567777777777777554444667777777777


Q ss_pred             CccCC
Q 047563          131 GNLYL  135 (222)
Q Consensus       131 ~n~~~  135 (222)
                      +|++.
T Consensus       293 ~N~l~  297 (622)
T 3g06_A          293 GNPLS  297 (622)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            77754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.83  E-value=1.9e-08  Score=86.79  Aligned_cols=78  Identities=27%  Similarity=0.451  Sum_probs=37.5

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ++|+.|++++|.+++ +| .+.++++|+.|++++|.+++ +|..+   .+|+.|++++|++++ +| .+..+++|+.|++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            456666666666663 44 35556666666666655553 33221   244444444444442 23 2344444444444


Q ss_pred             ccccCC
Q 047563          107 SYNNLS  112 (222)
Q Consensus       107 ~~N~l~  112 (222)
                      ++|.++
T Consensus       203 ~~N~l~  208 (454)
T 1jl5_A          203 DNNSLK  208 (454)
T ss_dssp             CSSCCS
T ss_pred             CCCcCC
Confidence            444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.82  E-value=1.4e-10  Score=95.59  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=79.9

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCC-cCCCC-cCccCCCCCCCCeEEccCC-cCCCc-CchhhhcCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN-CLSGS-IPRSFSNLKMIESLDLSNN-RLSGQ-IPAQLIELN   99 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~   99 (222)
                      ..+++|+.|++++|.+++..+..+..+++|+.|++++| .+++. .+..+..+++|+.|++++| .+++. ++..+..++
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            45788899999998888777788888888999999888 56642 5666777888888888888 77743 466677777


Q ss_pred             -ccCceeccccc--CC-CCCCCC-CCCCCcCcccccCcc
Q 047563          100 -FLSNFNVSYNN--LS-GLIPDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus       100 -~L~~L~l~~N~--l~-~~~p~~-~~l~~l~~l~l~~n~  133 (222)
                       +|+.|++++|.  ++ +..+.. ..+++|+.+++.+|.
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence             88888888873  43 112222 346677777777776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.82  E-value=3e-10  Score=95.70  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=57.5

Q ss_pred             CCCcccEEEeecCCCCC----CCChhccCCcCCCeEEccCCcCCCCcCccCC----CC---------CCCCeEEccCCcC
Q 047563           25 NLNYMVGLDLSCNQLTG----NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFS----NL---------KMIESLDLSNNRL   87 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~Ls~N~l   87 (222)
                      .+++|+.|+|++|.++.    .+|..+..+++|+.|++++|.+....+..+.    .+         ++|+.|++++|++
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            34556666666666654    2444555556666666666655432222222    22         5666666666665


Q ss_pred             C-CcCc---hhhhcCcccCceecccccCC--C---CCC-CCCCCCCcCcccccCccC
Q 047563           88 S-GQIP---AQLIELNFLSNFNVSYNNLS--G---LIP-DKGQYSTFDETSYRGNLY  134 (222)
Q Consensus        88 ~-~~~p---~~~~~l~~L~~L~l~~N~l~--~---~~p-~~~~l~~l~~l~l~~n~~  134 (222)
                      + ...|   ..+..+++|+.|++++|.++  +   ..+ ....+++|+.+++.+|.+
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            4 2233   24445566666666666655  1   222 224455666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.80  E-value=2.2e-08  Score=83.23  Aligned_cols=86  Identities=20%  Similarity=0.236  Sum_probs=63.7

Q ss_pred             cEEEEEECCcEeeeCC--CCCCcccEEEeecCCCCCCCC-hhccCCcCCCe-EEccCCcCCCCcCccCCCCCCCCeEEcc
Q 047563            8 VKVEFVTKNRYELYNG--SNLNYMVGLDLSCNQLTGNVP-SEIGDLQKIRV-LNLSHNCLSGSIPRSFSNLKMIESLDLS   83 (222)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls   83 (222)
                      ..+.+..+.......+  .++++|+.|+|++|.+.+.+| ..|.++++++. +.++.|.++...|..|..+++|+.|+++
T Consensus        33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~  112 (350)
T 4ay9_X           33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  112 (350)
T ss_dssp             SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred             CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence            3445554555444322  578999999999999876554 56788888775 5667788987778889999999999999


Q ss_pred             CCcCCCcCch
Q 047563           84 NNRLSGQIPA   93 (222)
Q Consensus        84 ~N~l~~~~p~   93 (222)
                      +|++....+.
T Consensus       113 ~n~l~~~~~~  122 (350)
T 4ay9_X          113 NTGIKHLPDV  122 (350)
T ss_dssp             EECCSSCCCC
T ss_pred             ccccccCCch
Confidence            9988754443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.79  E-value=2.5e-08  Score=86.06  Aligned_cols=76  Identities=22%  Similarity=0.322  Sum_probs=36.1

Q ss_pred             cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCCCCCCCcCccccc
Q 047563           51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYR  130 (222)
Q Consensus        51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~~l~~l~l~  130 (222)
                      ++|+.|++++|.+++ +| .|..+++|+.|++++|++++ +|..   ..+|+.|++++|.+++. |....+++|+.+++.
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-ccccCCCCCCEEECC
Confidence            345555555555553 34 35555555555555555552 3322   13455555555555543 233444444444444


Q ss_pred             Ccc
Q 047563          131 GNL  133 (222)
Q Consensus       131 ~n~  133 (222)
                      +|.
T Consensus       204 ~N~  206 (454)
T 1jl5_A          204 NNS  206 (454)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.75  E-value=4.8e-08  Score=87.47  Aligned_cols=79  Identities=27%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|+|++|.++ .+|.   .+++|+.|++++|.+++ +|.   .+++|+.|++++|+++. +|.   .+++|+.|
T Consensus        79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L  146 (622)
T 3g06_A           79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQEL  146 (622)
T ss_dssp             CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred             cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEE
Confidence            3455555555555555 2332   34555555555555552 222   34555566666666552 333   23566666


Q ss_pred             ecccccCCCCC
Q 047563          105 NVSYNNLSGLI  115 (222)
Q Consensus       105 ~l~~N~l~~~~  115 (222)
                      ++++|.+++.+
T Consensus       147 ~Ls~N~l~~l~  157 (622)
T 3g06_A          147 SVSDNQLASLP  157 (622)
T ss_dssp             ECCSSCCSCCC
T ss_pred             ECcCCcCCCcC
Confidence            66666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.75  E-value=2.1e-09  Score=89.82  Aligned_cols=105  Identities=23%  Similarity=0.193  Sum_probs=88.1

Q ss_pred             EEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcC----ccCCCCC-CCCeEEccCCcCCCcCchhhhcC-----cc
Q 047563           31 GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP----RSFSNLK-MIESLDLSNNRLSGQIPAQLIEL-----NF  100 (222)
Q Consensus        31 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~  100 (222)
                      .++++.|.+++..|..+...++|+.|++++|.+++..+    ..+..++ +|+.|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46789999999888877777779999999999997666    7788888 89999999999998878888775     89


Q ss_pred             cCceecccccCCCCCCCC-----CCC-CCcCcccccCccCC
Q 047563          101 LSNFNVSYNNLSGLIPDK-----GQY-STFDETSYRGNLYL  135 (222)
Q Consensus       101 L~~L~l~~N~l~~~~p~~-----~~l-~~l~~l~l~~n~~~  135 (222)
                      |+.|++++|.+++..+..     ..+ ++|+.+++.+|.+.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            999999999998876542     223 67888888888753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=4.1e-08  Score=80.90  Aligned_cols=100  Identities=18%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             CCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCC-eEEccCCcCCCcCchhhhcCcccCce
Q 047563           26 LNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE-SLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      +++|+.++|++|.++...+..|.++++|+.+++++| ++...+..|.++.+|+ .+++.+ +++...+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999999777788999999999999998 7767778899999999 999998 7776777889999999999


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcc
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDET  127 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l  127 (222)
                      ++++|.++.+.+.. ..+++|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            99999998887665 445556554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.57  E-value=4e-08  Score=78.87  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=45.2

Q ss_pred             cCCcCCCeEEccCCcCCC--CcCccCCCCCCCCeEEccCCcCCCcCchhhhcCc--ccCceecccccCCCCCC
Q 047563           48 GDLQKIRVLNLSHNCLSG--SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELN--FLSNFNVSYNNLSGLIP  116 (222)
Q Consensus        48 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p  116 (222)
                      ..+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|++++|++.+..|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            356777778888887775  3345556777788888888877754  2334444  77778888888776554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.54  E-value=1.6e-09  Score=92.84  Aligned_cols=111  Identities=15%  Similarity=0.056  Sum_probs=79.0

Q ss_pred             CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCCcCccCC-----CCCCCCeEEccCCcCCCc----C
Q 047563           25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGSIPRSFS-----NLKMIESLDLSNNRLSGQ----I   91 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~   91 (222)
                      .+++|+.|++++|.++..    ++..+..+++|+.|++++|.+....+..+.     ..++|+.|++++|.+++.    +
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            478999999999998854    566677788999999999988644333332     236888888888888754    3


Q ss_pred             chhhhcCcccCceecccccCCCCCCCC------CCCCCcCcccccCccCC
Q 047563           92 PAQLIELNFLSNFNVSYNNLSGLIPDK------GQYSTFDETSYRGNLYL  135 (222)
Q Consensus        92 p~~~~~l~~L~~L~l~~N~l~~~~p~~------~~l~~l~~l~l~~n~~~  135 (222)
                      +..+..+++|+.|++++|.++...+..      ...++|+.+++.+|.+.
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            556667788888888888876543221      11457778888777643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.50  E-value=2.9e-09  Score=91.33  Aligned_cols=110  Identities=17%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             CCCcccEEEeecCCCCCCC-----ChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcCchhh
Q 047563           25 NLNYMVGLDLSCNQLTGNV-----PSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQIPAQL   95 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~   95 (222)
                      .+++|+.|++++|.++...     +..+..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+....+..+
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            4688999999999887432     22333578999999999988753    56667778899999999998875544444


Q ss_pred             hcC-----cccCceecccccCCCCC----CCC-CCCCCcCcccccCccC
Q 047563           96 IEL-----NFLSNFNVSYNNLSGLI----PDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus        96 ~~l-----~~L~~L~l~~N~l~~~~----p~~-~~l~~l~~l~l~~n~~  134 (222)
                      ...     ++|+.|++++|.+++..    +.. ..+++|+.+++.+|.+
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence            432     68999999999887652    111 3457888888888864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.33  E-value=1.7e-08  Score=84.89  Aligned_cols=106  Identities=22%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             cccEEEeecCCCCCCCChhc-----cCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcC----chh
Q 047563           28 YMVGLDLSCNQLTGNVPSEI-----GDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQI----PAQ   94 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~   94 (222)
                      +|+.|+|++|.++......+     ...++|+.|++++|.++..    ++..+...++|++|+|++|++....    +..
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            44555555555442222222     1234555555555555421    2222344555555666655554221    233


Q ss_pred             hhcCcccCceecccccCCCCCCCC-----CCCCCcCcccccCcc
Q 047563           95 LIELNFLSNFNVSYNNLSGLIPDK-----GQYSTFDETSYRGNL  133 (222)
Q Consensus        95 ~~~l~~L~~L~l~~N~l~~~~p~~-----~~l~~l~~l~l~~n~  133 (222)
                      +...++|+.|++++|.++......     ...++|+.+++.+|+
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            344455566666665554321110     123455556665555

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=3.5e-07  Score=73.35  Aligned_cols=61  Identities=28%  Similarity=0.314  Sum_probs=37.6

Q ss_pred             CCCCCCCeEEccCCcCCC--cCchhhhcCcccCceecccccCCCCCCCCCCCC--CcCcccccCcc
Q 047563           72 SNLKMIESLDLSNNRLSG--QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS--TFDETSYRGNL  133 (222)
Q Consensus        72 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~l~--~l~~l~l~~n~  133 (222)
                      ..+++|+.|+|++|+|++  .+|..+..+++|+.|+|++|.+++. .....+.  .|+.|.+.+|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCc
Confidence            345677777777777765  3345556677777777777777665 1222222  66666777776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=2.2e-06  Score=70.41  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=37.7

Q ss_pred             CCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCC-CCCCCcC-cccccC
Q 047563           74 LKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFD-ETSYRG  131 (222)
Q Consensus        74 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~l~~l~-~l~l~~  131 (222)
                      +++|+.+++++|+++...+..|.++.+|+.+++.+| +..+.+.. ..+.+|+ .+.+..
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence            457777777777777555566777777888877776 55554444 4455566 665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.18  E-value=2.9e-07  Score=77.37  Aligned_cols=90  Identities=19%  Similarity=0.221  Sum_probs=70.8

Q ss_pred             CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCCc----CccCCCCCCCCeEEccCCcCCCc----Cc
Q 047563           25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGSI----PRSFSNLKMIESLDLSNNRLSGQ----IP   92 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p   92 (222)
                      ..+.|+.|+|++|.++..    ++..+...++|+.|+|++|.+....    +..+...++|+.|+|++|.++..    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            357899999999999742    3445578899999999999987432    45567778999999999999853    23


Q ss_pred             hhhhcCcccCceecccccCCCC
Q 047563           93 AQLIELNFLSNFNVSYNNLSGL  114 (222)
Q Consensus        93 ~~~~~l~~L~~L~l~~N~l~~~  114 (222)
                      ..+...++|+.|++++|.++..
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHhCCCCCEEeccCCCCCHH
Confidence            3455678999999999998754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=3e-07  Score=69.69  Aligned_cols=110  Identities=11%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             CCCCcccEEEeecC-CCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCc----
Q 047563           24 SNLNYMVGLDLSCN-QLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQ----   90 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----   90 (222)
                      ...+.|+.|+|++| .++..    +...+...++|+.|+|++|.+...    +...+...++|+.|+|++|.+...    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            35678999999999 88742    344566778899999999998643    233445567899999999998753    


Q ss_pred             CchhhhcCcccCceec--ccccCCCCCCCC-----CCCCCcCcccccCcc
Q 047563           91 IPAQLIELNFLSNFNV--SYNNLSGLIPDK-----GQYSTFDETSYRGNL  133 (222)
Q Consensus        91 ~p~~~~~l~~L~~L~l--~~N~l~~~~p~~-----~~l~~l~~l~l~~n~  133 (222)
                      +...+...++|+.|++  ++|.+.......     ...++|+.+++.+|.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            2445556678999999  778886432111     223567777766654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.03  E-value=3e-07  Score=81.17  Aligned_cols=60  Identities=8%  Similarity=-0.102  Sum_probs=33.2

Q ss_pred             CCCCCeEEccCCcCCC-cCchhhhcCcccCceecccccCCCCC-CCC-CCCCCcCcccccCcc
Q 047563           74 LKMIESLDLSNNRLSG-QIPAQLIELNFLSNFNVSYNNLSGLI-PDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus        74 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~-~~l~~l~~l~l~~n~  133 (222)
                      +++|+.|++++|++++ .++..+..+++|+.|++++|.++... +.. ..+++|+.+++.+|.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            5566666666666653 22333455666666676666654321 111 235566666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.90  E-value=1.3e-06  Score=77.11  Aligned_cols=82  Identities=10%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCC----CcCccCCCCCCCCeEEccCCcCCCcCchhhh
Q 047563           25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSG----SIPRSFSNLKMIESLDLSNNRLSGQIPAQLI   96 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~   96 (222)
                      .+++|+.|+|++|.+++.    ++..+..+++|+.|++++|.+++    .++..+..+++|+.|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            355666666666665443    22233445566666666666541    223334455666666666666552 445555


Q ss_pred             cCcccCceecc
Q 047563           97 ELNFLSNFNVS  107 (222)
Q Consensus        97 ~l~~L~~L~l~  107 (222)
                      .+++|+.|+++
T Consensus       241 ~~~~L~~L~l~  251 (592)
T 3ogk_B          241 AAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEEEC
T ss_pred             hhhHHHhhccc
Confidence            55555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.88  E-value=1.3e-06  Score=77.08  Aligned_cols=87  Identities=13%  Similarity=0.054  Sum_probs=52.2

Q ss_pred             ccCCcCCCeEEccCCcCCCCcCccCCC-CCCCCeEEccCCcCCCcCchhh-hcCcccCceecccccCCCCCCC-C-CCCC
Q 047563           47 IGDLQKIRVLNLSHNCLSGSIPRSFSN-LKMIESLDLSNNRLSGQIPAQL-IELNFLSNFNVSYNNLSGLIPD-K-GQYS  122 (222)
Q Consensus        47 ~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~-~-~~l~  122 (222)
                      +..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.++..... . ..++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455666666655 343333333333 6777888888887765444444 5677888888888877433221 1 3466


Q ss_pred             CcCcccccCccC
Q 047563          123 TFDETSYRGNLY  134 (222)
Q Consensus       123 ~l~~l~l~~n~~  134 (222)
                      +|+.+++.+|+.
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            777777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.80  E-value=4.1e-06  Score=63.30  Aligned_cols=88  Identities=14%  Similarity=0.239  Sum_probs=68.2

Q ss_pred             CCCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEc--cCCcCCCcC---
Q 047563           25 NLNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDL--SNNRLSGQI---   91 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~~---   91 (222)
                      ..+.|+.|+|++|.++..    +...+...++|+.|+|++|.+...    +...+...++|+.|++  ++|.+....   
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            357899999999999842    234455668899999999999743    3456677789999999  889997542   


Q ss_pred             -chhhhcCcccCceecccccCC
Q 047563           92 -PAQLIELNFLSNFNVSYNNLS  112 (222)
Q Consensus        92 -p~~~~~l~~L~~L~l~~N~l~  112 (222)
                       ...+...++|+.|++++|.+.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeccCCCCC
Confidence             334555689999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.69  E-value=1.4e-05  Score=59.91  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=47.0

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCc-CCCCcCccCCCC----CCCCeEEccCCc-CCCcCchhhhcCccc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNC-LSGSIPRSFSNL----KMIESLDLSNNR-LSGQIPAQLIELNFL  101 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L  101 (222)
                      .|+.||++++.++..--..+.++++|+.|+|+++. ++...-..+..+    ++|+.|+++++. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46777777776664433445666777777777764 443222233333    357777777653 554333445566666


Q ss_pred             Cceecccc
Q 047563          102 SNFNVSYN  109 (222)
Q Consensus       102 ~~L~l~~N  109 (222)
                      +.|+++++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            77766655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.59  E-value=0.00017  Score=61.05  Aligned_cols=105  Identities=8%  Similarity=0.024  Sum_probs=81.1

Q ss_pred             CcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCC-----CCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCccc
Q 047563           27 NYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLS-----GSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFL  101 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  101 (222)
                      ..|+.+.+ .+.++...+..|.++++|+.+.+.+|.+.     ...+..|.++.+|+.+.+.+ .+.......|.++.+|
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            57888888 45566677888999999999999888765     35567899999999999984 5775667788899999


Q ss_pred             CceecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          102 SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       102 ~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      +.+.+..| ++.+.+.. ... +|+.+.+.+|...
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            99999655 66555555 345 8888888887543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.59  E-value=7.6e-06  Score=72.10  Aligned_cols=87  Identities=18%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhccC-CcCCCeEEccCCcCCCCcCccC-CCCCCCCeEEccCCcCCCcCch-hhhcCccc
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSGSIPRSF-SNLKMIESLDLSNNRLSGQIPA-QLIELNFL  101 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L  101 (222)
                      ++++|+.|++++ .++...+..+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++..+. ....+++|
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            356777777766 555443444444 7899999999999876555444 6689999999999999644333 34458999


Q ss_pred             CceecccccCC
Q 047563          102 SNFNVSYNNLS  112 (222)
Q Consensus       102 ~~L~l~~N~l~  112 (222)
                      +.|++++|+++
T Consensus       509 ~~L~l~~~~~~  519 (594)
T 2p1m_B          509 RSLWMSSCSVS  519 (594)
T ss_dssp             SEEEEESSCCB
T ss_pred             CEEeeeCCCCC
Confidence            99999999884

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.57  E-value=0.00024  Score=60.06  Aligned_cols=105  Identities=12%  Similarity=0.124  Sum_probs=81.8

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC-----CcCchhhhcC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS-----GQIPAQLIEL   98 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l   98 (222)
                      .++++|+.+++..| ++..-...|.+ .+|+.+.+. +.++...+..|.++.+|+.+.+.+|.+.     ...+..|.++
T Consensus       223 ~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c  299 (401)
T 4fdw_A          223 LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC  299 (401)
T ss_dssp             TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred             hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence            46889999999875 56566677877 789999994 5566566788999999999999998775     3556789999


Q ss_pred             cccCceecccccCCCCCCCC-CCCCCcCcccccCc
Q 047563           99 NFLSNFNVSYNNLSGLIPDK-GQYSTFDETSYRGN  132 (222)
Q Consensus        99 ~~L~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n  132 (222)
                      ++|+.+.+.+ .++.+.... ..+.+|+.+.+..+
T Consensus       300 ~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          300 PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            9999999984 466665554 45677888877555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.40  E-value=2.9e-05  Score=64.95  Aligned_cols=12  Identities=8%  Similarity=0.246  Sum_probs=6.7

Q ss_pred             CCcccEEEeecC
Q 047563           26 LNYMVGLDLSCN   37 (222)
Q Consensus        26 l~~L~~L~Ls~N   37 (222)
                      +++|+.|+|++|
T Consensus       171 ~P~L~~L~L~g~  182 (362)
T 2ra8_A          171 MPLLNNLKIKGT  182 (362)
T ss_dssp             CTTCCEEEEECC
T ss_pred             CCCCcEEEEeCC
Confidence            355666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00042  Score=49.15  Aligned_cols=38  Identities=24%  Similarity=0.178  Sum_probs=18.9

Q ss_pred             CCCeEEccCCcCCCcCchhhhcCcccCceecccccCCC
Q 047563           76 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG  113 (222)
Q Consensus        76 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~  113 (222)
                      +|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            34555555555554434444455555555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.11  E-value=0.0009  Score=47.40  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             cEEEeecCCCC-CCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCC
Q 047563           30 VGLDLSCNQLT-GNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLS   88 (222)
Q Consensus        30 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~   88 (222)
                      +.++.+++.++ ..+|..+  .++++.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46788888887 3455443  246899999999999777788999999999999999875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.04  E-value=0.00017  Score=60.30  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhcc--CCcCCCeEEccC--CcCCCC-----cCccC--CCCCCCCeEEccCCcCCCcCch
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIG--DLQKIRVLNLSH--NCLSGS-----IPRSF--SNLKMIESLDLSNNRLSGQIPA   93 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~   93 (222)
                      .+++|+.|++..+.++......+.  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|+|++|.+....+.
T Consensus       191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            478999999999887643333343  689999999863  221111     11122  2478999999999998754444


Q ss_pred             hhh---cCcccCceecccccCCCCC----CCC-CCCCCcCcccccCccC
Q 047563           94 QLI---ELNFLSNFNVSYNNLSGLI----PDK-GQYSTFDETSYRGNLY  134 (222)
Q Consensus        94 ~~~---~l~~L~~L~l~~N~l~~~~----p~~-~~l~~l~~l~l~~n~~  134 (222)
                      .+.   .+++|+.|+++.|.+....    +.. ..+++|+.+++..|.+
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            444   4789999999999987631    222 3467889999888763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.98  E-value=0.00017  Score=54.02  Aligned_cols=84  Identities=10%  Similarity=0.115  Sum_probs=61.1

Q ss_pred             cCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCc-CCCcCchhhhcC----cccCceeccccc-CCCCC-CCCCCCCC
Q 047563           51 QKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR-LSGQIPAQLIEL----NFLSNFNVSYNN-LSGLI-PDKGQYST  123 (222)
Q Consensus        51 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~l~~N~-l~~~~-p~~~~l~~  123 (222)
                      ..|+.||++++.++...-..+..+++|+.|+|+++. ++..--..+..+    ++|+.|+++++. ++... .....+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999886666677899999999999996 664433445553    479999999975 55321 11145778


Q ss_pred             cCcccccCccC
Q 047563          124 FDETSYRGNLY  134 (222)
Q Consensus       124 l~~l~l~~n~~  134 (222)
                      |+.|++++.+.
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            88888776553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.50  E-value=0.0066  Score=50.78  Aligned_cols=106  Identities=8%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++..|+.+.+..+..+ .-...|.+.++|+.+.+. +.++......|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus       262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            45677777777665443 555667778888888875 3445455567888888888888764 55355567888888888


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCcc
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNL  133 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~  133 (222)
                      +.+..+ ++.+.... ....+|+.+.+.++.
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            888644 44443333 456677777776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.44  E-value=0.024  Score=46.94  Aligned_cols=102  Identities=12%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++..|+.+.+..+ ++..-...|.+..+|+.+.+..+ ++......|.++.+|+.+.+.++.++......|.++.+|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3455555555544 33344455556666666666443 332444556777777777777766664555667777777777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccc
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSY  129 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l  129 (222)
                      .+..+ ++.+.... ....+|+.+.+
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            76543 43333322 23444555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.36  E-value=0.0045  Score=51.78  Aligned_cols=101  Identities=11%  Similarity=0.038  Sum_probs=61.0

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      ++..++.+....+.+.   ...|....+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......|.++.+|+.+
T Consensus       274 ~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i  348 (394)
T 4fs7_A          274 NCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI  348 (394)
T ss_dssp             TCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence            4556666665554332   344666777777777654 44345566777777777777644 553445667777777777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRG  131 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~  131 (222)
                      .+..| ++.+.... ....+|+.+.+..
T Consensus       349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          349 NFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            77655 54444433 3455666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.23  E-value=0.011  Score=49.39  Aligned_cols=85  Identities=11%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .+++.|+.+.+. +.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus       285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence            467889999986 4566566778999999999999865 55466678999999999999765 66456778999999999


Q ss_pred             eecccccC
Q 047563          104 FNVSYNNL  111 (222)
Q Consensus       104 L~l~~N~l  111 (222)
                      +++.++..
T Consensus       362 i~~~~~~~  369 (394)
T 4gt6_A          362 IEYSGSRS  369 (394)
T ss_dssp             EEESSCHH
T ss_pred             EEECCcee
Confidence            99988753

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.07  E-value=0.012  Score=48.84  Aligned_cols=84  Identities=12%  Similarity=0.102  Sum_probs=68.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++..|+.+.+..+ ++......|.++++|+.+.+.++.++......|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            46778899888654 55456678899999999999999888667788999999999999765 65455678999999999


Q ss_pred             eecccc
Q 047563          104 FNVSYN  109 (222)
Q Consensus       104 L~l~~N  109 (222)
                      +.+..+
T Consensus       338 i~ip~~  343 (379)
T 4h09_A          338 ISYPKS  343 (379)
T ss_dssp             CCCCTT
T ss_pred             EEECCc
Confidence            887643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.48  E-value=0.0035  Score=47.65  Aligned_cols=62  Identities=11%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CcccEEEeecC-CCCC----CCChhccCCcCCCeEEccCCcCCCCc----CccCCCCCCCCeEEccCCcCC
Q 047563           27 NYMVGLDLSCN-QLTG----NVPSEIGDLQKIRVLNLSHNCLSGSI----PRSFSNLKMIESLDLSNNRLS   88 (222)
Q Consensus        27 ~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~   88 (222)
                      +.|+.|+|++| .|..    .+...+..-+.|+.|+|++|.+....    ...+..-.+|+.|+|+.|.|.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            45666666664 5542    12233444456666666666664221    222333455666666666665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.39  E-value=0.034  Score=46.40  Aligned_cols=103  Identities=7%  Similarity=0.056  Sum_probs=72.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++..++.+.+..+... .....|.....++.+....+.+   ....|..+.+|+.+.+.++ +.......|.++.+|+.
T Consensus       250 ~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            45778888888877554 6667788888888887766542   3346788889999988765 55455677888999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCc
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGN  132 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n  132 (222)
                      +++.++ ++.+.... ....+|+.+.+..+
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            988654 55554444 44567777776554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.86  E-value=0.021  Score=43.33  Aligned_cols=85  Identities=20%  Similarity=0.251  Sum_probs=57.9

Q ss_pred             CcccEEEeecCCCCC----CCChhccCCcCCCeEEccCCcCCCCcC----ccCCCCCCCCeEEccCCcC---CCc----C
Q 047563           27 NYMVGLDLSCNQLTG----NVPSEIGDLQKIRVLNLSHNCLSGSIP----RSFSNLKMIESLDLSNNRL---SGQ----I   91 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l---~~~----~   91 (222)
                      +.|+.|+|++|.+..    .+...+..=+.|+.|+|+.|.+....-    ..+..-..|+.|+|++|..   ...    +
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            589999999999983    233445566789999999999974322    3455567799999987643   321    1


Q ss_pred             chhhhcCcccCceecccccC
Q 047563           92 PAQLIELNFLSNFNVSYNNL  111 (222)
Q Consensus        92 p~~~~~l~~L~~L~l~~N~l  111 (222)
                      ...+..=++|..|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            22334446778888776643

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=92.69  E-value=0.016  Score=32.53  Aligned_cols=13  Identities=15%  Similarity=-0.138  Sum_probs=4.9

Q ss_pred             hhHHHHHhhhhhh
Q 047563          184 LGLLAILWINSFW  196 (222)
Q Consensus       184 ~~v~~~~~~~~~~  196 (222)
                      +++++++++.+|+
T Consensus        26 ii~~~~~~~~RRr   38 (44)
T 2ks1_B           26 VVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhh
Confidence            3333333333333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=90.54  E-value=0.057  Score=30.26  Aligned_cols=19  Identities=5%  Similarity=-0.150  Sum_probs=7.6

Q ss_pred             eehhhhhHHHHHhhhhhhh
Q 047563          179 YVTVILGLLAILWINSFWR  197 (222)
Q Consensus       179 ~~~~~~~v~~~~~~~~~~r  197 (222)
                      +++++++++.++++.+|++
T Consensus        20 v~~v~ii~~~~~~~~RRRr   38 (44)
T 2l2t_A           20 LFILVIVGLTFAVYVRRKS   38 (44)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhhhh
Confidence            3333333444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           NL  +  L L  N ++   P  +  L K++ L  ++N +S     S +NL  I  L   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYN 109
           N++S   P  L  L  ++   ++  
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 50  LQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 109
           L+ +  L L  N +S   P   S+L  ++ L  +NN++S    + L  L  ++  +  +N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 110 NLSGLIP 116
            +S L P
Sbjct: 362 QISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 21  YNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
              + L  +  L  + NQ++   P  I     +  L+L+ N L      + ++L  +  L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 81  DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS 122
           DL+NN++S   P  L  L  L+   +  N +S + P  G  +
Sbjct: 247 DLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 286

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 19 ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
          +++  + L   +   L    +T  V     DL ++  L      +  SI      L  + 
Sbjct: 14 QIFTDTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLT 69

Query: 79 SLDLSNNRLSGQIP 92
           ++ SNN+L+   P
Sbjct: 70 QINFSNNQLTDITP 83

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 7e-11
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 33  DLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP 92
           DL  N++ G +P  +  L+ +  LN+S N L G IP    NL+  +    +NN+     P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 28/61 (45%), Positives = 36/61 (59%)

Query: 75  KMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLY 134
           K +  LDL NNR+ G +P  L +L FL + NVS+NNL G IP  G    FD ++Y  N  
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

Query: 135 L 135
           L
Sbjct: 304 L 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN-CLSGS 66
           + L ++  L++S N L G +P + G+LQ+  V   ++N CL GS
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 22  NGSNLNYMVGLDLSCNQLTGN--VPSEIGDLQKIRVLNLSHNC-LSGSIPRSFSNLKMIE 78
             +    +  LDLS   L     +PS + +L  +  L +     L G IP + + L  + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 79  SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
            L +++  +SG IP  L ++  L   + SYN LSG +P                  +S  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-08
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 32  LDLSCNQLTGNVPSEIGD-LQKIRVLNLSHNCLSG----SIPRSFSNLKMIESLDLSNNR 86
           LD+ C +L+    +E+   LQ+ +V+ L    L+      I  +      +  L+L +N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 87  LSGQIPAQLIELNFLSNFNVSYNNLSG 113
           L       +++     +  +   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 32  LDLSCNQLTGNVPSEIGD----LQKIRVLNLSHNCLSGSIPRSFS-----NLKMIESLDL 82
           L L+   ++ +  S +         +R L+LS+NCL  +              ++E L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 83  SNNRLSGQIPAQLIEL 98
            +   S ++  +L  L
Sbjct: 434 YDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 2e-04
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 51  QKIRVLNLSHNCLSG----SIPRSFSNLKMIESLDLSNNRLSGQIPAQLIE-----LNFL 101
             +RVL L+   +S     S+  +      +  LDLSNN L      QL+E        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 102 SNFNVSYNNLSGLIPD 117
               +     S  + D
Sbjct: 429 EQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 53  IRVLNLSHNCLSGS-IPRSFSNLKMIESLDLSNNRLSGQ----IPAQLIELNFLSNFNVS 107
           I+ L++    LS +        L+  + + L +  L+      I + L     L+  N+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 108 YNNLSG 113
            N L  
Sbjct: 64  SNELGD 69

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 22/107 (20%), Positives = 37/107 (34%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
           LDL  N++T     +  +L+ +  L L +N +S   P +F+ L  +E L LS N+L    
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95

Query: 92  PAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
                 L  L         +   + +        E            
Sbjct: 96  EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 31  GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQ 90
            +  S   L   VP ++       +L+L +N ++      F NLK + +L L NN++S  
Sbjct: 14  VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 91  IPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSCN 145
            P     L  L    +S N L  L     +              +     N    
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 18  YELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMI 77
             ++NG N   +V L  +  + +G        ++K+  + ++   ++        +L   
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL--- 173

Query: 78  ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137
             L L  N+++    A L  LN L+   +S+N++S +       +      +  N  L  
Sbjct: 174 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

Query: 138 PTINKSCN 145
                + +
Sbjct: 234 VPGGLADH 241

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 16  NRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLK 75
                        +  L L  N++T    + +  L  +  L LS N +S     S +N  
Sbjct: 160 TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 76  MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            +  L L+NN+L  ++P  L +  ++    +  NN+S +  +
Sbjct: 220 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-Q 90
           LDL+   L  +V   +     +       + +   +   FS  + ++ +DLSN+ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 91  IPAQLIELNFLSNFNVSYNNLSGLIP 116
           +   L + + L N ++    LS  I 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 32  LDLSCNQLTGNVPS-EIGDLQKIRVLNLSHNCLSG-SIPRSFSNLKMIESLDLSNNRLSG 89
           +   C +   + P  E     +++ ++LS++ +   ++    S    +++L L   RLS 
Sbjct: 26  IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 85

Query: 90  QIPAQLIELNFLSNFNVSYNN 110
            I   L + + L   N+S  +
Sbjct: 86  PIVNTLAKNSNLVRLNLSGCS 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIP---------------------RS 70
           L L+   LT  V   +  L  +  L+LSHN L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 71  FSNLKMIESLDLSNNRL-SGQIPAQLIELNFLSNFNVSYNNLSGL 114
            +NL  ++ L L NNRL        L+    L   N+  N+L   
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 54 RVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
          RVL+L+H  L+  +      L ++  LDLS+NRL    PA
Sbjct: 1  RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA 38

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 24/99 (24%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPS---------------------EIGDLQKIRVLNLSHNC 62
             L  +  LDLS N+L    P+                      + +L +++ L L +N 
Sbjct: 17  EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 76

Query: 63  L-SGSIPRSFSNLKMIESLDLSNNRLSGQ--IPAQLIEL 98
           L   +  +   +   +  L+L  N L  +  I  +L E+
Sbjct: 77  LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 32  LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSG-- 89
           L++S N+L   +P+    L++   L  S N L+  +P    NLK    L +  N L    
Sbjct: 289 LNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLREFP 340

Query: 90  QIPAQLIELNF 100
            IP  + +L  
Sbjct: 341 DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-06
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 34  LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
              N  +  + S       +  LN+S+N L   +P     L   E L  S N L+ ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 94  QLIELNFLSNFNVSYNNLSGL 114
               L  L   +V YN L   
Sbjct: 322 LPQNLKQL---HVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 52  KIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 111
           +   L L++  LS S+P    +L   ESL  S N L+ ++P        L +  V  NNL
Sbjct: 39  QAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPE---LPQSLKSLLVDNNNL 90

Query: 112 SGL 114
             L
Sbjct: 91  KAL 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 32 LDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI 91
          L+L+   L+ ++P     L+    L  S N L+  +P    +LK +   + +   LS   
Sbjct: 43 LELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 92 P 92
          P
Sbjct: 98 P 98

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
          S +   + ++     LT  +P ++   +   +L+LS N L      +      +  L+L 
Sbjct: 7  SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 84 NNR 86
             
Sbjct: 64 RAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 35  SCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
           + N LT      +  L+ +  L L  N L  +IP+ F    ++    L  N  
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 36  CNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQL 95
            N+L    P  +    K+  L+L++N L+       + L+ +++L L  N L   IP   
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 96  IELNFLSNFNVSYNNL 111
              + L    +  N  
Sbjct: 192 FGSHLLPFAFLHGNPW 207

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 31  GLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPR-SFSNLKMIESLDLSNNRLSG 89
           GL  + +    +    +   + +  L + +      +       L  + +L +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 90  QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCP 138
             P        LS  N+S+N L  L     Q  +  E    GN  L C 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN-PLHCS 118

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
           +L  ++ L L  N L+      +  L+ ++ L L+ N       R+      ++    S+
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSS 257

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYNNLSG 113
           + +   +P +L   +      ++ N+L G
Sbjct: 258 SEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 25  NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSN 84
            L+ +  L L  N++    P    DL ++  L L  N LS     + + L+ ++ L L++
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 85  NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 118
           N       A+ +   +L  F  S + +   +P +
Sbjct: 235 NPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 7e-04
 Identities = 25/104 (24%), Positives = 37/104 (35%)

Query: 34  LSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPA 93
           L  N L         DL  +  L L  N +S    R+F  L  ++ L L  NR++   P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 94  QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC 137
              +L  L    +  NNLS L  +        +     +    C
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 21/94 (22%), Positives = 33/94 (35%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLS 83
             L  +  L L    L    P     L  ++ L L  N L      +F +L  +  L L 
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 84  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 117
            NR+S         L+ L    +  N ++ + P 
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 21  YNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESL 80
              + L  +  L L+ N    +          ++    S + +  S+P+  +   +    
Sbjct: 219 EALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---K 274

Query: 81  DLSNNRLSG 89
            L+ N L G
Sbjct: 275 RLAANDLQG 283

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 39 LTGNVPSEIG---DLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRL 87
          LT  +  +     +  + R L+L    +   I    + L   +++D S+N +
Sbjct: 3  LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 24  SNLNYMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLD 81
            N+  ++ L+LS N+L    ++ S +     +++LNLS N L             +E L 
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 82  LSNNRLSGQIPAQ 94
           L  N LS     Q
Sbjct: 122 LDGNSLSDTFRDQ 134

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 24  SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSG--SIPRSFSNLKMIESLD 81
              N  V L+   +     +     ++ ++  LNLS+N L     +         ++ L+
Sbjct: 39  VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 97

Query: 82  LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 124
           LS N L  +     I+   L    +  N+LS    D+  Y + 
Sbjct: 98  LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 10/72 (13%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 19 ELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIE 78
          ++++       +  +L    +T  V     +L  I  +  +++ +          L  + 
Sbjct: 16 QIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVT 71

Query: 79 SLDLSNNRLSGQ 90
           L L+ N+L+  
Sbjct: 72 KLFLNGNKLTDI 83

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 47  IGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNR 86
                   +L++S   +         NLK + +    N +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 27  NYMVGLDLSCNQLTGNVPSEIGD------LQKIRVLNLSHNCLSGSIPRS-----FSNLK 75
             +  L L+   L+    + + D         ++ L L +N +     R+        + 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 76  MIESLDLSNNRLS--GQIPAQLIEL 98
            +  L+L+ NR S    +  ++ E+
Sbjct: 303 DLLFLELNGNRFSEEDDVVDEIREV 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.36
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.09
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.02
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.99
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.96
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.75
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.68

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.2e-16  Score=121.01  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=102.4

Q ss_pred             CcccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCcee
Q 047563           27 NYMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFN  105 (222)
Q Consensus        27 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  105 (222)
                      +.++.|+|++|.|++. .+..|..+++|+.|++++|.+....+..|..+++|+.|+|++|+++...|..|.++++|+.|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            5899999999999864 466788999999999999999988899999999999999999999988888999999999999


Q ss_pred             cccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      |++|.++++++.. ..+++++.+++.+|++.|..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cCCccccccCHHHhcCCccccccccccccccccc
Confidence            9999999998887 67889999999999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=4.7e-15  Score=111.97  Aligned_cols=116  Identities=24%  Similarity=0.287  Sum_probs=98.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|+|++|.+....+..|..+++|+.|++++|.++...|..|.++++|+.|+|++|+|++..|+.|..+++|+.
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence            46899999999999999999999999999999999999999888889999999999999999999888889999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~  139 (222)
                      +++++|++.+..+..+....++...+..+...|..|
T Consensus       131 l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             EECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            999999998765433223334555555666555433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.1e-14  Score=112.65  Aligned_cols=110  Identities=24%  Similarity=0.194  Sum_probs=77.1

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      +|+.|++++|.+....+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++..+..+..+++|+.|+++
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            33333333333333333334444445555555555555555667778888899999999987777788889999999999


Q ss_pred             cccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          108 YNNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       108 ~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      +|.++.+++....+++|+.+++.+||+.|.
T Consensus       181 ~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            999997766667788899999999999885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3e-14  Score=100.13  Aligned_cols=101  Identities=24%  Similarity=0.291  Sum_probs=80.9

Q ss_pred             cEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccc
Q 047563           30 VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  109 (222)
Q Consensus        30 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  109 (222)
                      ++|+|++|.++ .++. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+| .+..+++|+.+++++|
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            47889999998 4443 788889999999999988 66777888899999999999998 445 4788889999999999


Q ss_pred             cCCCCCC--CCCCCCCcCcccccCccCC
Q 047563          110 NLSGLIP--DKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       110 ~l~~~~p--~~~~l~~l~~l~l~~n~~~  135 (222)
                      +++..+.  ....+++|+.+++.+|++.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            9887653  2256778888888888854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.50  E-value=1.2e-14  Score=117.39  Aligned_cols=113  Identities=35%  Similarity=0.565  Sum_probs=99.5

Q ss_pred             cEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccc
Q 047563           30 VGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  109 (222)
Q Consensus        30 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N  109 (222)
                      ..++++++...+..|..+..+++++.+++++|.+.+.+| .+..+++|+.|++++|+++|.+|..+..+++|+.|++++|
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            356777777777778888888999999999999986655 6888999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcCcccccCccCCCCCCCCCCC
Q 047563          110 NLSGLIPDKGQYSTFDETSYRGNLYLSCPTINKSC  144 (222)
Q Consensus       110 ~l~~~~p~~~~l~~l~~l~l~~n~~~c~~~~~~~C  144 (222)
                      +++|.+|....+++|+.+++.+|+.+|+.|. ..|
T Consensus       279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl-p~c  312 (313)
T d1ogqa_         279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PAC  312 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTTS-SCC
T ss_pred             cccccCCCcccCCCCCHHHhCCCccccCCCC-CCC
Confidence            9999999888899999999999999998764 255

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.3e-14  Score=102.01  Aligned_cols=109  Identities=18%  Similarity=0.155  Sum_probs=87.5

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCC-cCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceec
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHN-CLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  106 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l  106 (222)
                      ..+.++.+++.+. ..|..+..+++++.|++++| .++...+..|.++++|+.|++++|+|+...|..|..+++|+.|++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456788888887 56777888888999998765 477666677888999999999999998777888888899999999


Q ss_pred             ccccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          107 SYNNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       107 ~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      ++|+++.+++.......++.+++.+|++.|.
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             cCCCCcccChhhhccccccccccCCCcccCC
Confidence            9999988777765555788888889988763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=114.38  Aligned_cols=114  Identities=24%  Similarity=0.249  Sum_probs=89.9

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.+++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|+.+++++|++++..|..|..+++|+.
T Consensus       126 ~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             chhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence            45667788888888888666677777888888888888888777777888888888888888888777888888888888


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~  137 (222)
                      |++++|.+.+.++.. ..+.+|+.+++.+|++.|.
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccccccccccccccccccccccCEEEecCCCCCCC
Confidence            888888888777655 5677788888888887774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.7e-14  Score=102.54  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++..++.|+|++|.|+ .+++.+..+++|+.|++++|.++ .++ .|..+++|+.|++++|+++...+..+..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            35778999999999999 55777788999999999999998 443 5889999999999999999666666788999999


Q ss_pred             eecccccCCCCCC--CCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c  136 (222)
                      |++++|+++....  ....+++|+.+++.+|+...
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCcccc
Confidence            9999999987542  23567899999999998543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-12  Score=102.65  Aligned_cols=113  Identities=27%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|+|++|.++ ..+..+..+++|+.|++++|.+....+..+..+.+++.|++++|.+....+..+..++.++.+
T Consensus        75 ~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            4455555555555554 233444555555555555555554445555555666666666666665555556666777777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      ++++|++++.++.. ..+++|+.+++++|.+...|
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccccccccCccccccccccceeecccCCCcccC
Confidence            77777777766654 55677777777777655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=3.3e-13  Score=94.69  Aligned_cols=89  Identities=30%  Similarity=0.374  Sum_probs=77.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC-chhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI-PAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~  102 (222)
                      ..+++|++|++++|.++ .+|+.+..+++|+.|++++|.++. +| .+..+++|+.+++++|+++... ...+..+++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            46889999999999999 677789999999999999999984 44 4889999999999999998443 25688899999


Q ss_pred             ceecccccCCCCC
Q 047563          103 NFNVSYNNLSGLI  115 (222)
Q Consensus       103 ~L~l~~N~l~~~~  115 (222)
                      .+++++|+++...
T Consensus        94 ~L~l~~N~i~~~~  106 (124)
T d1dcea3          94 LLNLQGNSLCQEE  106 (124)
T ss_dssp             EEECTTSGGGGSS
T ss_pred             EEECCCCcCCcCc
Confidence            9999999998654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.36  E-value=3.7e-13  Score=108.46  Aligned_cols=108  Identities=29%  Similarity=0.480  Sum_probs=80.0

Q ss_pred             cccEEEeecCCCCC--CCChhccCCcCCCeEEccC-CcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           28 YMVGLDLSCNQLTG--NVPSEIGDLQKIRVLNLSH-NCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .++.|+|++|.+++  .+|..++++++|++|++++ |.+.|.+|..|..+++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57778888887776  3677777888888888875 67777778778888888888888888777777777777777777


Q ss_pred             ecccccCCCCCCCC-CCCCCcCcccccCccCC
Q 047563          105 NVSYNNLSGLIPDK-GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       105 ~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~  135 (222)
                      +++.|.+.+.+|.. ..++.++.+++.+|.+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccccccccccCchhhccCcccceeeccccccc
Confidence            77777777666644 56666777777766543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=3.2e-12  Score=102.47  Aligned_cols=112  Identities=21%  Similarity=0.296  Sum_probs=72.3

Q ss_pred             CCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           23 GSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        23 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ...+++|+.|++++|..++..+..|.+++.++.|++++|.+++..+..+.++++|+.|+|++|+++ .+|..+..+++|+
T Consensus       167 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence            334566667777777766666666666777777777777776666666666777777777777776 4566666677777


Q ss_pred             ceecccccCCCCCCCC-------CCCCCcCcccccCccCC
Q 047563          103 NFNVSYNNLSGLIPDK-------GQYSTFDETSYRGNLYL  135 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~-------~~l~~l~~l~l~~n~~~  135 (222)
                      .|++++|+++.+....       ..+.+++.+++.+|++.
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7777777766553321       22445666666666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-12  Score=101.30  Aligned_cols=115  Identities=20%  Similarity=0.200  Sum_probs=97.0

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      .++++|+.|++++|.+....+..+...++|+.+++++|.+++..+..|..+++|+.|++++|++++..+..|.++++|+.
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccch
Confidence            46788999999999988777777888888999999999998777778888889999999999998777888888999999


Q ss_pred             eecccccCCCCCCCC-CCCCCcCcccccCccCCCCC
Q 047563          104 FNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCP  138 (222)
Q Consensus       104 L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~  138 (222)
                      +++++|.+++..|.. ..++++..+++.+|.+...+
T Consensus       182 l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            999999998887766 66788888888888865443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.7e-12  Score=92.16  Aligned_cols=91  Identities=19%  Similarity=0.136  Sum_probs=77.8

Q ss_pred             CCCCcccEEEeecC-CCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           24 SNLNYMVGLDLSCN-QLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ..+++|+.|++++| .++...+..|.++++|+.|++++|.++...|..|..+++|+.|+|++|+++...+..+ ...+|+
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l~  106 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQ  106 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCCC
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh-cccccc
Confidence            35789999999766 5997778889999999999999999998888999999999999999999995444444 445799


Q ss_pred             ceecccccCCCCC
Q 047563          103 NFNVSYNNLSGLI  115 (222)
Q Consensus       103 ~L~l~~N~l~~~~  115 (222)
                      .|++++|++.+..
T Consensus       107 ~L~L~~Np~~C~C  119 (156)
T d2ifga3         107 ELVLSGNPLHCSC  119 (156)
T ss_dssp             EEECCSSCCCCCG
T ss_pred             ccccCCCcccCCc
Confidence            9999999997644

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4e-12  Score=93.15  Aligned_cols=102  Identities=17%  Similarity=0.141  Sum_probs=82.6

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCc--hhhhcCccc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIP--AQLIELNFL  101 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L  101 (222)
                      ..+++|+.|+|++|.|+. ++ .|..+++|+.|++++|.++...+..+..+++|+.|++++|++.. ++  ..+..+++|
T Consensus        38 ~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L  114 (162)
T d1a9na_          38 ATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSL  114 (162)
T ss_dssp             GGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTC
T ss_pred             cccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccc-ccccccccccccc
Confidence            457899999999999994 43 48899999999999999996666667889999999999999984 34  467889999


Q ss_pred             CceecccccCCCCCCC----CCCCCCcCccc
Q 047563          102 SNFNVSYNNLSGLIPD----KGQYSTFDETS  128 (222)
Q Consensus       102 ~~L~l~~N~l~~~~p~----~~~l~~l~~l~  128 (222)
                      +.+++++|+++..+.-    ...+++|+.++
T Consensus       115 ~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         115 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             chhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999999766421    14456666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.09  E-value=2e-10  Score=91.76  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.+++++|.++ .+|..+  +++++.|++++|......+..|..++.++.|++++|.+.+..+..+.++++|+.
T Consensus       147 ~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         147 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             ccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            35788999999999998 455543  678999999999999888899999999999999999999888899999999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLSC  137 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c~  137 (222)
                      |++++|.++.+++....+++|+.+++++|+....
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             eecccccccccccccccccCCCEEECCCCccCcc
Confidence            9999999998866667899999999999986543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=3.1e-10  Score=92.76  Aligned_cols=105  Identities=24%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..  .+..++.++.+.+..|.+++  ...+..+++++.|++++|++++. + .+..+++|+.
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~  333 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQR  333 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCE
T ss_pred             cccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCE
Confidence            45778888888888877432  24455566666666665553  12344555566666666666533 2 2455566666


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      |++++|++++.. ....+++|+.+++++|++.
T Consensus       334 L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         334 LFFANNKVSDVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCCh-hHcCCCCCCEEECCCCcCC
Confidence            666666555432 2344555666666555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.02  E-value=2.5e-12  Score=97.36  Aligned_cols=108  Identities=19%  Similarity=0.283  Sum_probs=89.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|+|++|.|+. ++ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++. + +.+..+++|+.
T Consensus        45 ~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~  119 (198)
T d1m9la_          45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSE
T ss_pred             hcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-ccccccccccc
Confidence            358899999999999994 44 4888999999999999998 566655566789999999999984 3 45788999999


Q ss_pred             eecccccCCCCCC--CCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIP--DKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p--~~~~l~~l~~l~l~~n~~~c  136 (222)
                      |++++|.++....  ....+++|+.+++.+|+...
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccchhccccccccccCCCccceeecCCCcccc
Confidence            9999999987542  23678899999999998544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.1e-09  Score=82.16  Aligned_cols=105  Identities=23%  Similarity=0.361  Sum_probs=80.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|++|++++|.+++.. + +.++++|+.|++++|.+.. ++ .+..+++|+.|++++|.....  ..+..+++|+.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~-~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~  132 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNR  132 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             ccCCCcCcCccccccccCcc-c-ccCCccccccccccccccc-cc-ccccccccccccccccccccc--cccchhhhhHH
Confidence            35789999999999998543 3 8899999999999998873 33 377888899999988887742  34677888888


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      +++++|++... +....+++++.+.+.+|.+.
T Consensus       133 L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         133 LELSSNTISDI-SALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             EECCSSCCCCC-GGGTTCTTCSEEECCSSCCC
T ss_pred             hhhhhhhhccc-cccccccccccccccccccc
Confidence            88888887754 33456777788887777643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.96  E-value=1.2e-09  Score=82.07  Aligned_cols=106  Identities=18%  Similarity=0.324  Sum_probs=84.9

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+..++.|++++|.++. ++ .+..+++|+.|++++|.+++..|  +..+++|+.|++++|.+. .++ .+..++.|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccc
Confidence            357789999999999984 33 47789999999999999985443  888999999999999987 444 4788999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~c  136 (222)
                      +++++|......+ ...+++++.+.+.+|....
T Consensus       111 L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~  142 (199)
T d2omxa2         111 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD  142 (199)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC
T ss_pred             ccccccccccccc-cchhhhhHHhhhhhhhhcc
Confidence            9999988876543 4567888999998887543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=3e-09  Score=80.52  Aligned_cols=104  Identities=25%  Similarity=0.367  Sum_probs=73.1

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+ ..+..++.++.
T Consensus        65 ~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~  138 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLES  138 (210)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCE
T ss_pred             hhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-cc-ccccccccccc
Confidence            457889999999999885 33 3678889999999999887 344 4778888899998888876 33 24566666677


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      +++++|.++... ....+++|+.+++.+|.+
T Consensus       139 l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         139 LYLGNNKITDIT-VLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             cccccccccccc-cccccccccccccccccc
Confidence            777766665432 223455666666666653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=5.5e-09  Score=79.01  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=71.3

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+.+|+.|++++|.++...  .+..+++|+.|++++|.+++..  .+..+++|+.|++++|++++ +| .+..+++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            4667788888888877432  3667888888888888887433  25677888888888888873 44 46777888888


Q ss_pred             ecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          105 NVSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       105 ~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      ++++|.+.... ....++.++.+.+.+|..
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             ccccccccccc-cccccccccccccccccc
Confidence            88888776432 334556666666666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.7e-09  Score=78.82  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             EEEEEECCcEeeeCCCCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCc-CccCCCCCCCCeEEcc-CCc
Q 047563            9 KVEFVTKNRYELYNGSNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSI-PRSFSNLKMIESLDLS-NNR   86 (222)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls-~N~   86 (222)
                      .+.+..++..+... .-.++++.|++++|.++...+..|.++++|+.|++++|.+...+ +..|..++.++.+.+. .|+
T Consensus        12 ~i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          12 VFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             EEEEESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             EEEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence            44555555443332 22358999999999999766778999999999999999987554 4568899999999876 467


Q ss_pred             CCCcCchhhhcCcccCceecccccCCCCCC
Q 047563           87 LSGQIPAQLIELNFLSNFNVSYNNLSGLIP  116 (222)
Q Consensus        87 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p  116 (222)
                      +....+..|..+++|+.+++++|.+....+
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred             ccccccccccccccccccccchhhhccccc
Confidence            887778888999999999999999876544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.3e-08  Score=82.87  Aligned_cols=105  Identities=24%  Similarity=0.408  Sum_probs=78.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..+++|+.|++++|.+++..  .+..+++|+.++++++.+++..  .+..+..++.+.++.|++.+ + ..+..+++++.
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~  311 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED-I-SPISNLKNLTY  311 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSE
T ss_pred             hcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc-c-cccchhcccCe
Confidence            45778888888888888533  2677888888888888887433  36677888888888888874 2 34677888888


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      +++++|.+++..+ ...+++|+.+++.+|.+.
T Consensus       312 L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         312 LTLYFNNISDISP-VSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             EECCSSCCSCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCCcc-cccCCCCCEEECCCCCCC
Confidence            8888888887643 456778888888888643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=1.2e-08  Score=77.89  Aligned_cols=104  Identities=21%  Similarity=0.320  Sum_probs=58.5

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ..++.|+.++++++...+..  .+...+.+..+.++.+.+....  .+...++|+.|++++|.+... + .+..+++|+.
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~  177 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTT  177 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             cccccccccccccccccccc--hhccccchhhhhchhhhhchhh--hhccccccccccccccccccc-h-hhccccccee
Confidence            35677777777777766322  2445556666666665554222  244555666666666665522 2 2555666666


Q ss_pred             eecccccCCCCCCCCCCCCCcCcccccCccC
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      |++++|++++.. ....+++|+.+++.+|++
T Consensus       178 L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         178 LKADDNKISDIS-PLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCCEEECTTSCC
T ss_pred             cccCCCccCCCh-hhcCCCCCCEEECcCCcC
Confidence            666666665532 234455666666666653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=1.8e-08  Score=76.78  Aligned_cols=100  Identities=23%  Similarity=0.319  Sum_probs=80.3

Q ss_pred             CCCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSN  103 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  103 (222)
                      ...+.+..+.++++.+...  ..+..+++|+.|++++|.+....  .+..+++|+.|++++|++++ ++ .+..+++|+.
T Consensus       126 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~  199 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIE  199 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCE
T ss_pred             ccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCE
Confidence            4567888999999988743  33678889999999999987433  37889999999999999984 44 3789999999


Q ss_pred             eecccccCCCCCCCCCCCCCcCccccc
Q 047563          104 FNVSYNNLSGLIPDKGQYSTFDETSYR  130 (222)
Q Consensus       104 L~l~~N~l~~~~p~~~~l~~l~~l~l~  130 (222)
                      |++++|++++..| ...+++|+.++++
T Consensus       200 L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         200 VHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             EECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             EECcCCcCCCCcc-cccCCCCCEEEee
Confidence            9999999997654 4567788877764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=2.8e-10  Score=85.73  Aligned_cols=106  Identities=18%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             CCCcccEEEeecC--CCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccC
Q 047563           25 NLNYMVGLDLSCN--QLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLS  102 (222)
Q Consensus        25 ~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  102 (222)
                      ....++.++++++  .++ .+|..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|+++ .+|.....+++|+
T Consensus        21 ~~~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~   96 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCTTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCC
T ss_pred             cccccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccc
Confidence            3445666777765  344 56778999999999999999998 444 4788999999999999998 6676666778899


Q ss_pred             ceecccccCCCCCCCCCCCCCcCcccccCccCC
Q 047563          103 NFNVSYNNLSGLIPDKGQYSTFDETSYRGNLYL  135 (222)
Q Consensus       103 ~L~l~~N~l~~~~p~~~~l~~l~~l~l~~n~~~  135 (222)
                      .|++++|.++... ....+++|+.+++++|.+.
T Consensus        97 ~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~  128 (198)
T d1m9la_          97 ELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT  128 (198)
T ss_dssp             EEECSEEECCCHH-HHHHHHHSSEEEESEEECC
T ss_pred             ccccccccccccc-cccccccccccccccchhc
Confidence            9999999998753 3456788999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.54  E-value=2.5e-07  Score=73.86  Aligned_cols=94  Identities=23%  Similarity=0.247  Sum_probs=60.6

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecc
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  107 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~  107 (222)
                      +++.|||++|.++ .+|+.   +++|+.|++++|.++ .+|..   +.+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            5667778777777 45542   456777778777777 55654   346777777777776 33321   1357777777


Q ss_pred             cccCCCCCCCCCCCCCcCcccccCccC
Q 047563          108 YNNLSGLIPDKGQYSTFDETSYRGNLY  134 (222)
Q Consensus       108 ~N~l~~~~p~~~~l~~l~~l~l~~n~~  134 (222)
                      +|.+...+ ..+.++.|+.+++.++..
T Consensus       107 ~n~l~~lp-~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         107 NNQLEKLP-ELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             cccccccc-chhhhccceeeccccccc
Confidence            77777553 345566777777666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.3e-07  Score=69.97  Aligned_cols=115  Identities=20%  Similarity=0.022  Sum_probs=73.3

Q ss_pred             CCCCcccEEEeecCCCCCCCCh-hccCCcCCCeEEccCCcCCCCcCccCCCCC-CCCeEEccCCcCCCcCchhhhcCccc
Q 047563           24 SNLNYMVGLDLSCNQLTGNVPS-EIGDLQKIRVLNLSHNCLSGSIPRSFSNLK-MIESLDLSNNRLSGQIPAQLIELNFL  101 (222)
Q Consensus        24 ~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L  101 (222)
                      .++++|+.+++++|.+....+. .+..+..+..+...++.+....+..|.+++ .++.+++++|+++...+..+ ...++
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l  178 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQL  178 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCE
T ss_pred             cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhh
Confidence            4678999999999998743332 233344454555566666655556666665 67778888888874444333 33444


Q ss_pred             -CceecccccCCCCCCCC-CCCCCcCcccccCccCCCCCC
Q 047563          102 -SNFNVSYNNLSGLIPDK-GQYSTFDETSYRGNLYLSCPT  139 (222)
Q Consensus       102 -~~L~l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c~~~  139 (222)
                       +.+.+++|.++.+++.. ..+++|+.+++.+|.+...++
T Consensus       179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             hccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence             34456777787766554 567788888888887654433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.6e-08  Score=70.85  Aligned_cols=86  Identities=20%  Similarity=0.166  Sum_probs=61.9

Q ss_pred             CChhccCCcCCCeEEccCCcCCCCc--CccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCceecccccCCCCCCCC--
Q 047563           43 VPSEIGDLQKIRVLNLSHNCLSGSI--PRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK--  118 (222)
Q Consensus        43 ~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--  118 (222)
                      ++..+..+++|+.|++++|.++...  +..+..+++|+.|++++|+++...+-.+.....|+.+++++|++.......  
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3444557889999999999998543  345677899999999999998543333445567899999999998765431  


Q ss_pred             ------CCCCCcCccc
Q 047563          119 ------GQYSTFDETS  128 (222)
Q Consensus       119 ------~~l~~l~~l~  128 (222)
                            ..+++|+.++
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                  3466676664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2e-08  Score=72.80  Aligned_cols=104  Identities=22%  Similarity=0.102  Sum_probs=69.0

Q ss_pred             cccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcC--chhhhcCcccCcee
Q 047563           28 YMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQI--PAQLIELNFLSNFN  105 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~  105 (222)
                      ..+.|+++++...    ..+..+..+..++...+... .++..+..+++|+.|+|++|+|+...  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            4455676665432    12344444444544444433 44555567889999999999998542  45677899999999


Q ss_pred             cccccCCCCCCCC-CCCCCcCcccccCccCCC
Q 047563          106 VSYNNLSGLIPDK-GQYSTFDETSYRGNLYLS  136 (222)
Q Consensus       106 l~~N~l~~~~p~~-~~l~~l~~l~l~~n~~~c  136 (222)
                      +++|.++...+-. .....++.+.+.+|+..+
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcCc
Confidence            9999998765422 233468888999998643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.21  E-value=3.2e-06  Score=67.20  Aligned_cols=82  Identities=30%  Similarity=0.424  Sum_probs=65.9

Q ss_pred             CCCcccEEEeecCCCCCCCChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCCcCCCcCchhhhcCcccCce
Q 047563           25 NLNYMVGLDLSCNQLTGNVPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNNRLSGQIPAQLIELNFLSNF  104 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  104 (222)
                      .+++|+.|+|++|.|+ .+|..   +.+|+.|++++|.++ .++..   .+.|++|++++|.+. .+|. +..+++|+.+
T Consensus        56 ~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          56 LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhccceee
Confidence            4679999999999999 66764   468899999999987 44432   246999999999998 5664 5788999999


Q ss_pred             ecccccCCCCCC
Q 047563          105 NVSYNNLSGLIP  116 (222)
Q Consensus       105 ~l~~N~l~~~~p  116 (222)
                      ++++|.+...+.
T Consensus       126 ~l~~~~~~~~~~  137 (353)
T d1jl5a_         126 DVDNNSLKKLPD  137 (353)
T ss_dssp             ECCSSCCSCCCC
T ss_pred             cccccccccccc
Confidence            999998876554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.2e-07  Score=76.69  Aligned_cols=38  Identities=26%  Similarity=0.201  Sum_probs=16.6

Q ss_pred             CCcccEEEeecCCCCC----CCChhccCCcCCCeEEccCCcC
Q 047563           26 LNYMVGLDLSCNQLTG----NVPSEIGDLQKIRVLNLSHNCL   63 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l   63 (222)
                      ++++++|+|++|.++.    .++..+...++|+.|++++|.+
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            3444455555554441    1122234444455555555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=3.1e-06  Score=69.49  Aligned_cols=107  Identities=19%  Similarity=0.236  Sum_probs=76.6

Q ss_pred             cccEEEeecCCCCCCC-ChhccCCcCCCeEEccCCcCCC----CcCccCCCCCCCCeEEccCCcCCCcCchhhh-----c
Q 047563           28 YMVGLDLSCNQLTGNV-PSEIGDLQKIRVLNLSHNCLSG----SIPRSFSNLKMIESLDLSNNRLSGQIPAQLI-----E   97 (222)
Q Consensus        28 ~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~   97 (222)
                      .|+.||+++|+++... ...+..+++++.|+|++|.++.    .++..+..+++|+.|+|++|+++......+.     .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6899999999998532 3345667899999999998872    2344567889999999999988532111222     1


Q ss_pred             CcccCceecccccCCCCC----C-CCCCCCCcCcccccCccC
Q 047563           98 LNFLSNFNVSYNNLSGLI----P-DKGQYSTFDETSYRGNLY  134 (222)
Q Consensus        98 l~~L~~L~l~~N~l~~~~----p-~~~~l~~l~~l~l~~n~~  134 (222)
                      ..+|+.|++++|+++...    + .....++|+.+++.+|..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            247999999999987542    1 124567888999888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.75  E-value=9.6e-07  Score=70.99  Aligned_cols=41  Identities=22%  Similarity=0.336  Sum_probs=17.8

Q ss_pred             cCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCC
Q 047563           48 GDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLS   88 (222)
Q Consensus        48 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~   88 (222)
                      ...++|+.|++++|.++..    +...+...++|+.|++++|.+.
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3344455555555444311    1222334444555555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.1e-05  Score=63.14  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             CCCcccEEEeecCCCCCC-CChhccCCcCCCeEEccCCcCCCCcCccCCCCCCCCeEEccCC-cCCCc-CchhhhcCccc
Q 047563           25 NLNYMVGLDLSCNQLTGN-VPSEIGDLQKIRVLNLSHNCLSGSIPRSFSNLKMIESLDLSNN-RLSGQ-IPAQLIELNFL  101 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L  101 (222)
                      ....|+.||++++.++.. ++..+..+++|+.|+++++.+....+..+..+++|+.|+++++ .++.. +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345778888888777633 3345667788888888888777666667777788888888774 45421 12223456778


Q ss_pred             Cceecccc
Q 047563          102 SNFNVSYN  109 (222)
Q Consensus       102 ~~L~l~~N  109 (222)
                      +.|+++++
T Consensus       124 ~~L~ls~c  131 (284)
T d2astb2         124 DELNLSWC  131 (284)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            88887764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.46  E-value=6e-06  Score=66.15  Aligned_cols=108  Identities=11%  Similarity=0.085  Sum_probs=64.1

Q ss_pred             CCcccEEEeecCCCCCC----CChhccCCcCCCeEEccCCcCCCC-----cCccCCCCCCCCeEEccCCcCCCc----Cc
Q 047563           26 LNYMVGLDLSCNQLTGN----VPSEIGDLQKIRVLNLSHNCLSGS-----IPRSFSNLKMIESLDLSNNRLSGQ----IP   92 (222)
Q Consensus        26 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p   92 (222)
                      .+.|+.+++++|.++..    +...+...++++.++++.|.+...     +...+...++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34566666666666522    122344566788888888777532     223455667788888888876532    23


Q ss_pred             hhhhcCcccCceecccccCCCCCCCC-------CCCCCcCcccccCcc
Q 047563           93 AQLIELNFLSNFNVSYNNLSGLIPDK-------GQYSTFDETSYRGNL  133 (222)
Q Consensus        93 ~~~~~l~~L~~L~l~~N~l~~~~p~~-------~~l~~l~~l~l~~n~  133 (222)
                      ..+..+++|+.|++++|.++......       .....++.+++++|.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            34556677888888888775421100       123456777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00018  Score=55.93  Aligned_cols=84  Identities=20%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             CCcccEEEeecC--CCCCC-CChhccCCcCCCeEEccCCc-CCCCcCccCCCCCCCCeEEccCC-cCCCcCchhhhcCcc
Q 047563           26 LNYMVGLDLSCN--QLTGN-VPSEIGDLQKIRVLNLSHNC-LSGSIPRSFSNLKMIESLDLSNN-RLSGQIPAQLIELNF  100 (222)
Q Consensus        26 l~~L~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~  100 (222)
                      .+.|+.|++++.  .++.. +...+..+++|+.|+++++. +++.....+..+++|++|+++++ .++......+..+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            468999999864  34422 22334568899999999864 77667777888999999999994 677666667888999


Q ss_pred             cCceecccc
Q 047563          101 LSNFNVSYN  109 (222)
Q Consensus       101 L~~L~l~~N  109 (222)
                      |+.|++.++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            999999876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.93  E-value=0.00016  Score=51.69  Aligned_cols=88  Identities=11%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             CCCcccEEEeecC-CCCCC----CChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEccCCcCCCcCch--
Q 047563           25 NLNYMVGLDLSCN-QLTGN----VPSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDLSNNRLSGQIPA--   93 (222)
Q Consensus        25 ~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~--   93 (222)
                      +.+.|+.|+|+++ .++..    +-..+...++|+.|++++|.+...    +...+...+.|+.|++++|.+......  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578888999863 45522    223455667788888888877622    223344567788888888887643221  


Q ss_pred             --hhhcCcccCceecccccCC
Q 047563           94 --QLIELNFLSNFNVSYNNLS  112 (222)
Q Consensus        94 --~~~~l~~L~~L~l~~N~l~  112 (222)
                        .+...++|+.|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence              2334456777777776544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.46  E-value=0.00085  Score=47.75  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             CCCcccEEEeecCCCCC----CCChhccCCcCCCeEEccCCcCCCCc----CccCCCCCCCCeEEccCCcCCCc------
Q 047563           25 NLNYMVGLDLSCNQLTG----NVPSEIGDLQKIRVLNLSHNCLSGSI----PRSFSNLKMIESLDLSNNRLSGQ------   90 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~------   90 (222)
                      ..+.|+.|+|++|.++.    .+...+...+.|+.|++++|.+....    -..+...++|+.|++++|++...      
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            45789999999999873    23345566788999999999987432    23466778899999999976632      


Q ss_pred             -CchhhhcCcccCceeccccc
Q 047563           91 -IPAQLIELNFLSNFNVSYNN  110 (222)
Q Consensus        91 -~p~~~~~l~~L~~L~l~~N~  110 (222)
                       +...+..-++|..++++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence             22334445677778776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.61  E-value=0.0045  Score=43.60  Aligned_cols=87  Identities=11%  Similarity=0.121  Sum_probs=52.1

Q ss_pred             CCCcccEEEeec-CCCCCC----CChhccCCcCCCeEEccCCcCCCCc----CccCCCCCCCCeEEccCCcCCCcC----
Q 047563           25 NLNYMVGLDLSC-NQLTGN----VPSEIGDLQKIRVLNLSHNCLSGSI----PRSFSNLKMIESLDLSNNRLSGQI----   91 (222)
Q Consensus        25 ~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~----   91 (222)
                      +.+.|+.|+|++ +.++..    +-..+...++|+.|++++|.+....    ...+....+++.+++++|.+....    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            457888888887 456521    2234556778888888888775322    223445677888888888775322    


Q ss_pred             chhhhcCcccCceec--ccccC
Q 047563           92 PAQLIELNFLSNFNV--SYNNL  111 (222)
Q Consensus        92 p~~~~~l~~L~~L~l--~~N~l  111 (222)
                      ...+...++|+.+++  ++|.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHhCccccEEeeccCCCcC
Confidence            123344556665444  34444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.68  E-value=0.0067  Score=42.63  Aligned_cols=87  Identities=16%  Similarity=0.250  Sum_probs=60.7

Q ss_pred             CCCcccEEEeecCCCCCCC----ChhccCCcCCCeEEccCCcCCCC----cCccCCCCCCCCeEEc--cCCcCCCc----
Q 047563           25 NLNYMVGLDLSCNQLTGNV----PSEIGDLQKIRVLNLSHNCLSGS----IPRSFSNLKMIESLDL--SNNRLSGQ----   90 (222)
Q Consensus        25 ~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----   90 (222)
                      ..++|+.|++++|.++...    ...+...+.++.++++++.+...    +...+...++|+.++|  +.|.+...    
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            5689999999999987432    23456678999999999988633    2244566788887666  56666532    


Q ss_pred             CchhhhcCcccCceecccccC
Q 047563           91 IPAQLIELNFLSNFNVSYNNL  111 (222)
Q Consensus        91 ~p~~~~~l~~L~~L~l~~N~l  111 (222)
                      +...+...++|+.|+++.+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            334455678888888876543