Citrus Sinensis ID: 047571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-
Protein Sequence
MESTQALAVSLSLCVHSFPPNPISNNHQFFKLKASATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccccccccccHHHHHHHccccccHHHHHHHHHHHHccccccHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHcccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MESTQALAVSLSLcvhsfppnpisnnhqffklkasatkpestyfQKRKKyhtkksaekdafpsslplheknpraIYKDIQRFARQNKLKEALVILDYmdqqgipvnVTTFNALITACVRTRSLVEGRLIHTHIRinglenngFLRTKLVKMYtscgsfedaekvfdesssesvypwNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRvfdetgdrdiVVWGSMIAGFAHNRLRWEALDCARWMiregiypnSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMyckcrdmnSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQqegfrpdvVTVATVIPVCSQLKALNHGKEIHAYAVknqflpnvSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFrsmqlskhrpdsVAMARMLSVSGQLKALKLGKEIHGQVlkkdfasvpfvAAENIKMYGMCGFLECAKLVFdavpvkgsITWTAIIEAYGYNDLCQEALSLFDkmrnggftpnhFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS
Flexible Loop (DISEMBL)
MESTQALAVSLSLCVHSFPPNPISNNHQFFKLKAsatkpestyfqKRKKYhtkksaekdafpsslplheknpRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIhthiringlenngfLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVlkneryseELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS
Low Complexity Region (SEG)
MESTQALAVSLSLCVHSFPPNPISNNHQFFKLKASATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS
Disordered region (IsUnstruct)
*******AVSLSLCVHSF*******************************************************AIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFD***SESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQ*********AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEE************
Disordered Region (DISOPRED)
****QALAVSLSLC*********************ATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF*EMSS***
Disordered Region (DISEMBL)
********VSLSLCVHSFPPNPISNNHQFFKLKASAT***********************FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAE**********VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAH**********
Disordered Region (DISPRO)
**STQALAVSLSLCVHSFPPNPISNNHQFFKLKASATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESTQALAVSLSLCVHSFPPNPISNNHQFFKLKASATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	681	2.2.26 [Sep-21-2011]
Q9C9I3	689	Pentatricopeptide repeat-	yes	no	0.938	0.927	0.640	0.0
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.869	0.679	0.322	1e-94
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.963	0.737	0.303	8e-88
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.832	0.700	0.318	8e-86
Q9LFI1	768	Pentatricopeptide repeat-	no	no	0.879	0.779	0.297	6e-85
Q9STE1	857	Pentatricopeptide repeat-	no	no	0.885	0.703	0.295	1e-84
Q9FLZ9	677	Pentatricopeptide repeat-	no	no	0.828	0.833	0.308	7e-83
O49619	804	Pentatricopeptide repeat-	no	no	0.769	0.651	0.327	2e-81
Q9LUS3	654	Pentatricopeptide repeat-	no	no	0.814	0.848	0.313	1e-80
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.814	0.700	0.310	7e-79

>sp|Q9C9I3|PP115_ARATH Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/645 (64%), Positives = 510/645 (79%), Gaps = 6/645 (0%)

Query: 38  KPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDY 97
           +P ++  +K K +      E+DAFPSSLPLH KNP  I++DIQ FARQN L+ AL ILDY
Sbjct: 47  RPSTSPAKKPKPFR-----ERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVALTILDY 101

Query: 98  MDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGS 157
           ++Q+GIPVN TTF+AL+ ACVR +SL+ G+ +H HIRINGLE+N FLRTKLV MYT+CGS
Sbjct: 102 LEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGS 161

Query: 158 FEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI 217
            +DA+KVFDES+S +VY WNALLRG VI+GKKRY+ VL  + +MRELGV LNVY+ S V 
Sbjct: 162 VKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLSNVF 221

Query: 218 KSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIV 277
           KSFAGASAL QGLKTHAL IKNG  + + L+TSL+DMYFKCGK+ LARRVFDE  +RDIV
Sbjct: 222 KSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIV 281

Query: 278 VWGSMIAGFAHNRLRWEALDCARWMI-REGIYPNSVVLTILLPVIGEAWARKLGQEVHAY 336
           VWG+MIAG AHN+ +WEAL   R MI  E IYPNSV+LT +LPV+G+  A KLG+EVHA+
Sbjct: 282 VWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGKEVHAH 341

Query: 337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQ 396
           VLK++ Y E+ FV S L+D+YCKC DM S  RVFY +++RN I WTALMSGY +NGR +Q
Sbjct: 342 VLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRFDQ 401

Query: 397 ALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMI 456
           ALRSI WMQQEGFRPDVVT+ATV+PVC++L+A+  GKEIH YA+KN FLPNVS++TSLM+
Sbjct: 402 ALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSLMV 461

Query: 457 MYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA 516
           MYSKCGV +Y ++LFD +E RNV +WTAMID  +EN  L   + VFR M LSKHRPDSV 
Sbjct: 462 MYSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKHRPDSVT 521

Query: 517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576
           M R+L+V   LKALKLGKE+HG +LKK+F S+PFV+A  IKMYG CG L  A   FDAV 
Sbjct: 522 MGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVSARIIKMYGKCGDLRSANFSFDAVA 581

Query: 577 VKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636
           VKGS+TWTAIIEAYG N+L ++A++ F++M + GFTPN FTF  +LSIC+QAGF DEA R
Sbjct: 582 VKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVDEAYR 641

Query: 637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS 681
            FN+M R Y ++  EEHY ++I++L R GR+EEA R   MSSS S
Sbjct: 642 FFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEAQRLAVMSSSSS 686

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  347 bits (891), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/598 (32%), Positives = 327/598 (54%), Gaps = 6/598 (1%)

Query: 79  IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL 138
           ++RF     L+ A+ +L    +  I  +  T  +++  C  ++SL +G+ +   IR NG 
Sbjct: 68  LRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGF 125

Query: 139 ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNY 198
             +  L +KL  MYT+CG  ++A +VFDE   E    WN L+     +G   + G +  +
Sbjct: 126 VIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD--FSGSIGLF 183

Query: 199 MKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKC 258
            KM   GV+++ YTFSCV KSF+   ++  G + H  ++K+GF +   +  SL+  Y K 
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243

Query: 259 GKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILL 318
            ++  AR+VFDE  +RD++ W S+I G+  N L  + L     M+  GI  +   +  + 
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303

Query: 319 PVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNE 378
               ++    LG+ VH+  +K     E+ F  ++L+DMY KC D++SA  VF E  +R+ 
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKCGDLDSAKAVFREMSDRSV 362

Query: 379 ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438
           + +T++++GY   G   +A++    M++EG  PDV TV  V+  C++ + L+ GK +H +
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422

Query: 439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA 498
             +N    ++ +  +LM MY+KCG +  +  +F EM V+++ISW  +I    +N   ++A
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482

Query: 499 LGVFRSM-QLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK 557
           L +F  + +  +  PD   +A +L     L A   G+EIHG +++  + S   VA   + 
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542

Query: 558 MYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT 617
           MY  CG L  A ++FD +  K  ++WT +I  YG +   +EA++LF++MR  G   +  +
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602

Query: 618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFRE 675
           F  LL  C+ +G  DE  R FN+M    KIE   EHY  ++D+L R G + +A+RF E
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIE 660

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  325 bits (832), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 209/689 (30%), Positives = 340/689 (49%), Gaps = 33/689 (4%)

Query: 7   LAVSLSL-CVHSFPPN--PISNNHQFFKLKASATKPESTYFQKRKKYHTKKSAEKDAFPS 63
           LA + SL  +  FP    P S +   + L+A+ T                 ++     PS
Sbjct: 5   LAFTFSLPSIFPFPSQLLPFSRHKHPYLLRATPTSATEDV-----------ASAVSGAPS 53

Query: 64  SLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSL 123
                 ++P      ++   R N L+EA++    M   GI  +   F AL+ A    + +
Sbjct: 54  IFISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDM 113

Query: 124 VEGRLIHTHIRINGLENNGF-LRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG 182
             G+ IH H+   G   +   +   LV +Y  CG F    KVFD  S  +   WN+L+  
Sbjct: 114 ELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI-- 171

Query: 183 AVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG---ASALMQGLKTHALLIKN 239
           + +   +++   L  +  M +  V+ + +T   V+ + +       LM G + HA  ++ 
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK 231

Query: 240 GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCA 299
           G ++  I+ T L+ MY K GK+  ++ +    G RD+V W ++++    N    EAL+  
Sbjct: 232 GELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL 290

Query: 300 RWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK 359
           R M+ EG+ P+   ++ +LP        + G+E+HAY LKN    E  FV S+LVDMYC 
Sbjct: 291 REMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCN 350

Query: 360 CRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQE-GFRPDVVTVAT 418
           C+ + S  RVF    +R   LW A+++GY  N   ++AL     M++  G   +  T+A 
Sbjct: 351 CKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410

Query: 419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRN 478
           V+P C +  A +  + IH + VK     +  +  +LM MYS+ G +D ++++F +ME R+
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470

Query: 479 VISWTAMIDSCIENGRLDDALGVFRSMQ-----LSKH------RPDSVAMARMLSVSGQL 527
           +++W  MI   + +   +DAL +   MQ     +SK       +P+S+ +  +L     L
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAAL 530

Query: 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAII 587
            AL  GKEIH   +K + A+   V +  + MY  CG L+ ++ VFD +P K  ITW  II
Sbjct: 531 SALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVII 590

Query: 588 EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI 647
            AYG +   QEA+ L   M   G  PN  TF  + + C+ +G  DE  RIF VM   Y +
Sbjct: 591 MAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGV 650

Query: 648 EALEEHYLIMIDILTRFGRIEEAHRFREM 676
           E   +HY  ++D+L R GRI+EA++   M
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  318 bits (815), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/571 (31%), Positives = 301/571 (52%), Gaps = 4/571 (0%)

Query: 103 IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAE 162
           IP NV    A +    R  SL E R I   +  NGL    F +TKLV ++   GS ++A 
Sbjct: 31  IPANVYEHPAALL-LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAA 89

Query: 163 KVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG 222
           +VF+   S+    ++ +L+G   A        L  +++MR   V+  VY F+ ++K    
Sbjct: 90  RVFEPIDSKLNVLYHTMLKG--FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD 147

Query: 223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSM 282
            + L  G + H LL+K+GF   L   T L +MY KC ++  AR+VFD   +RD+V W ++
Sbjct: 148 EAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTI 207

Query: 283 IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNER 342
           +AG++ N +   AL+  + M  E + P+ + +  +LP +       +G+E+H Y +++  
Sbjct: 208 VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG- 266

Query: 343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIA 402
           +   + + ++LVDMY KC  + +A ++F    ERN + W +++  YV N   ++A+    
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326

Query: 403 WMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462
            M  EG +P  V+V   +  C+ L  L  G+ IH  +V+     NVS++ SL+ MY KC 
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386

Query: 463 VLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS 522
            +D +  +F +++ R ++SW AMI    +NGR  DAL  F  M+    +PD+     +++
Sbjct: 387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446

Query: 523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSIT 582
              +L      K IHG V++       FV    + MY  CG +  A+L+FD +  +   T
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS 642
           W A+I+ YG +   + AL LF++M+ G   PN  TF  ++S C+ +G  +   + F +M 
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566

Query: 643 RGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673
             Y IE   +HY  M+D+L R GR+ EA  F
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1

 Score =  315 bits (808), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 181/609 (29%), Positives = 319/609 (52%), Gaps = 10/609 (1%)

Query: 70  KNPRAIYKDIQRFARQNKLKEALVILDYMDQQG-IPVNVTTFNALITACVRTRSLVEGRL 128
           K    +   I    + N  +EAL   D+  +     + + T+ +LI AC  +RSL +GR 
Sbjct: 29  KTEELMNDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRK 88

Query: 129 IHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK 188
           IH HI  +  + +  L   ++ MY  CGS  DA +VFD     ++  + +++ G    G+
Sbjct: 89  IHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQ 148

Query: 189 KRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILR 248
                 L  Y+KM +  +  + + F  +IK+ A +S +  G + HA +IK     +LI +
Sbjct: 149 GAEAIRL--YLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQ 206

Query: 249 TSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIY 308
            +LI MY +  ++  A RVF     +D++ W S+IAGF+     +EAL   + M+  G++
Sbjct: 207 NALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVF 266

Query: 309 -PNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAW 367
            PN  +    L           G ++H   +K+E     +    SL DMY +C  +NSA 
Sbjct: 267 HPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAI-AGCSLCDMYARCGFLNSAR 325

Query: 368 RVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK 427
           RVF + E  +   W  +++G  +NG  ++A+   + M+  GF PD +++ +++  C+Q K
Sbjct: 326 RVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTK 383

Query: 428 --ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR-NVISWTA 484
             AL+ G +IH+Y +K  FL ++++  SL+ MY+ C  L     LF++     + +SW  
Sbjct: 384 PMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNT 443

Query: 485 MIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD 544
           ++ +C+++ +  + L +F+ M +S+  PD + M  +L    ++ +LKLG ++H   LK  
Sbjct: 444 ILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTG 503

Query: 545 FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFD 604
            A   F+    I MY  CG L  A+ +FD++  +  ++W+ +I  Y  +   +EAL LF 
Sbjct: 504 LAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFK 563

Query: 605 KMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRF 664
           +M++ G  PNH TF  +L+ C+  G  +E  +++  M   + I   +EH   ++D+L R 
Sbjct: 564 EMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARA 623

Query: 665 GRIEEAHRF 673
           GR+ EA RF
Sbjct: 624 GRLNEAERF 632

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1

 Score =  314 bits (805), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 314/609 (51%), Gaps = 6/609 (0%)

Query: 65  LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLV 124
           L L   + R     I  F R   L +AL     M   G+  +V+TF  L+ ACV  ++  
Sbjct: 96  LDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK 155

Query: 125 EGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAV 184
               +   +   G++ N F+ + L+K Y   G  +   K+FD    +    WN +L G  
Sbjct: 156 GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYA 215

Query: 185 IAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDY 244
             G      V+  +  MR   +  N  TF CV+   A    +  G++ H L++ +G VD+
Sbjct: 216 KCGA--LDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSG-VDF 272

Query: 245 L-ILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMI 303
              ++ SL+ MY KCG+   A ++F      D V W  MI+G+  + L  E+L     MI
Sbjct: 273 EGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMI 332

Query: 304 REGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDM 363
             G+ P+++  + LLP + +    +  +++H Y++++   S ++F+ S+L+D Y KCR +
Sbjct: 333 SSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHS-ISLDIFLTSALIDAYFKCRGV 391

Query: 364 NSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVC 423
           + A  +F +    + +++TA++SGY+ NG    +L    W+ +    P+ +T+ +++PV 
Sbjct: 392 SMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVI 451

Query: 424 SQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWT 483
             L AL  G+E+H + +K  F    +I  +++ MY+KCG ++ + ++F+ +  R+++SW 
Sbjct: 452 GILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWN 511

Query: 484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543
           +MI  C ++     A+ +FR M +S    D V+++  LS    L +   GK IHG ++K 
Sbjct: 512 SMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKH 571

Query: 544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLF 603
             AS  +  +  I MY  CG L+ A  VF  +  K  ++W +II A G +   +++L LF
Sbjct: 572 SLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLF 631

Query: 604 DKM-RNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT 662
            +M    G  P+  TF  ++S C   G  DE  R F  M+  Y I+  +EHY  ++D+  
Sbjct: 632 HEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFG 691

Query: 663 RFGRIEEAH 671
           R GR+ EA+
Sbjct: 692 RAGRLTEAY 700

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1

 Score =  308 bits (790), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 299/574 (52%), Gaps = 10/574 (1%)

Query: 106 NVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVF 165
           +V  + +L+     T+S+ + + +H H+ I G   +G + + L   Y  CG    A K+F
Sbjct: 14  SVKQYQSLLNHFAATQSISKTKALHCHV-ITGGRVSGHILSTLSVTYALCGHITYARKLF 72

Query: 166 DESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQL--NVYTFSCVIKSFAGA 223
           +E    S+  +N ++R  V  G   Y   +  +++M   GV+   + YT+  V K+    
Sbjct: 73  EEMPQSSLLSYNIVIRMYVREG--LYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGEL 130

Query: 224 SALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMI 283
            ++  GL  H  ++++ F     ++ +L+ MY   GK+++AR VFD   +RD++ W +MI
Sbjct: 131 KSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMI 190

Query: 284 AGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERY 343
           +G+  N    +AL    WM+ E +  +   +  +LPV G     ++G+ VH  V + +R 
Sbjct: 191 SGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV-EEKRL 249

Query: 344 SEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAW 403
            +++ V+++LV+MY KC  M+ A  VF   E R+ I WT +++GY  +G +E AL     
Sbjct: 250 GDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRL 309

Query: 404 MQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463
           MQ EG RP+ VT+A+++ VC     +N GK +H +AV+ Q   ++ I TSL+ MY+KC  
Sbjct: 310 MQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKR 369

Query: 464 LDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523
           +D   ++F      +   W+A+I  C++N  + DALG+F+ M+     P+   +  +L  
Sbjct: 370 VDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPA 429

Query: 524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV----PVKG 579
              L  L+    IH  + K  F S    A   + +Y  CG LE A  +F+ +      K 
Sbjct: 430 YAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKD 489

Query: 580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFN 639
            + W A+I  YG +     AL +F +M   G TPN  TF   L+ C+ +G  +E   +F 
Sbjct: 490 VVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFR 549

Query: 640 VMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673
            M   YK  A   HY  ++D+L R GR++EA+  
Sbjct: 550 FMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNL 583

Arabidopsis thaliana (taxid: 3702)

>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1

 Score =  304 bits (778), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 174/531 (32%), Positives = 290/531 (54%), Gaps = 7/531 (1%)

Query: 146 TKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELG 205
           T+ ++ +      EDA ++FDE +    + WN +++G    G   Y   +  Y +M   G
Sbjct: 68  TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCG--LYIEAVQFYSRMVFAG 125

Query: 206 VQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLAR 265
           V+ + +T+  VIKS AG S+L +G K HA++IK GFV  + +  SLI +Y K G    A 
Sbjct: 126 VKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAE 185

Query: 266 RVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAW 325
           +VF+E  +RDIV W SMI+G+      + +L   + M++ G  P+       L      +
Sbjct: 186 KVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVY 245

Query: 326 ARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALM 385
           + K+G+E+H + +++   + ++ V +S++DMY K  +++ A R+F    +RN + W  ++
Sbjct: 246 SPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMI 305

Query: 386 SGYVSNGRLEQALRSIAWM-QQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQF 444
             Y  NGR+  A      M +Q G +PDV+T   ++P  + L+    G+ IH YA++  F
Sbjct: 306 GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGF 361

Query: 445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRS 504
           LP++ + T+L+ MY +CG L  +  +FD M  +NVISW ++I + ++NG+   AL +F+ 
Sbjct: 362 LPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQE 421

Query: 505 MQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGF 564
           +  S   PDS  +A +L    +  +L  G+EIH  ++K  + S   +    + MY MCG 
Sbjct: 422 LWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGD 481

Query: 565 LECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624
           LE A+  F+ + +K  ++W +II AY  +   + ++ LF +M      PN  TF  LL+ 
Sbjct: 482 LEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAA 541

Query: 625 CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFRE 675
           C+ +G  DE    F  M R Y I+   EHY  M+D++ R G    A RF E
Sbjct: 542 CSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLE 592

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1

 Score =  301 bits (770), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 181/577 (31%), Positives = 309/577 (53%), Gaps = 22/577 (3%)

Query: 110 FNALITACVRTRSLVEGRLIHTHIRINGLE-NNGFLRTKLVKMYTSCGSFEDAEKVFDES 168
           F +L+  C+R+R+LV G++IH H+    L  ++  +   L ++Y SC   E A  VFDE 
Sbjct: 2   FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61

Query: 169 SSESVYP--WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL 226
               + P  W+ ++R    A        L  Y KM   GV+   YT+  V+K+ AG  A+
Sbjct: 62  PHPRINPIAWDLMIRA--YASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAI 119

Query: 227 MQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGF 286
             G   H+ +  + F   + + T+L+D Y KCG++++A +VFDE   RD+V W +MI+GF
Sbjct: 120 DDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179

Query: 287 AHNRLRWEALDCARWMIR-EGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSE 345
           + +    + +     M R +G+ PN   +  + P +G A A + G+ VH Y  +   +S 
Sbjct: 180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTR-MGFSN 238

Query: 346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQ 405
           +L V++ ++D+Y K + +  A RVF    ++NE+ W+A++ GYV N  +++A      M 
Sbjct: 239 DLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQML 298

Query: 406 QEGFRPDVVTVATVIPV--------CSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM 457
                     VA V PV        C++   L+ G+ +H YAVK  F+ ++++  +++  
Sbjct: 299 VND------NVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISF 352

Query: 458 YSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAM 517
           Y+K G L  + + F E+ +++VIS+ ++I  C+ N R +++  +F  M+ S  RPD   +
Sbjct: 353 YAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTL 412

Query: 518 ARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV 577
             +L+    L AL  G   HG  +   +A    +    + MY  CG L+ AK VFD +  
Sbjct: 413 LGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHK 472

Query: 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI 637
           +  ++W  ++  +G + L +EALSLF+ M+  G  P+  T   +LS C+ +G  DE  ++
Sbjct: 473 RDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQL 532

Query: 638 FNVMSRG-YKIEALEEHYLIMIDILTRFGRIEEAHRF 673
           FN MSRG + +    +HY  M D+L R G ++EA+ F
Sbjct: 533 FNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDF 569

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  295 bits (756), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 174/561 (31%), Positives = 288/561 (51%), Gaps = 6/561 (1%)

Query: 119 RTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNA 178
           R+ S+      H  I ++G  N+  L TKL +  +  G+   A  +F       V+ +N 
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 179 LLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIK 238
           L+RG  +         +F +++ +   ++ N  T++  I + +G      G   H   + 
Sbjct: 89  LMRGFSVNESPHSSLSVFAHLR-KSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147

Query: 239 NGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDC 298
           +G    L+L ++++ MYFK  +++ AR+VFD   ++D ++W +MI+G+  N +  E++  
Sbjct: 148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query: 299 ARWMIREGIYP-NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMY 357
            R +I E     ++  L  +LP + E    +LG ++H+   K   YS + +V +  + +Y
Sbjct: 208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLY 266

Query: 358 CKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA 417
            KC  +     +F E  + + + + A++ GY SNG  E +L     +   G R    T+ 
Sbjct: 267 SKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLV 326

Query: 418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR 477
           +++PV   L  +     IH Y +K+ FL + S+ T+L  +YSK   ++ + KLFDE   +
Sbjct: 327 SLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEK 383

Query: 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH 537
           ++ SW AMI    +NG  +DA+ +FR MQ S+  P+ V +  +LS   QL AL LGK +H
Sbjct: 384 SLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVH 443

Query: 538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQ 597
             V   DF S  +V+   I MY  CG +  A+ +FD +  K  +TW  +I  YG +   Q
Sbjct: 444 DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQ 503

Query: 598 EALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIM 657
           EAL++F +M N G TP   TF  +L  C+ AG   E   IFN M   Y  E   +HY  M
Sbjct: 504 EALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACM 563

Query: 658 IDILTRFGRIEEAHRFREMSS 678
           +DIL R G ++ A +F E  S
Sbjct: 564 VDILGRAGHLQRALQFIEAMS 584

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	681
225460139	725	PREDICTED: pentatricopeptide repeat-cont	0.985	0.925	0.675	0.0
224145077	678	predicted protein [Populus trichocarpa]	0.982	0.986	0.669	0.0
356531824	682	PREDICTED: pentatricopeptide repeat-cont	0.972	0.970	0.659	0.0
449447755	696	PREDICTED: pentatricopeptide repeat-cont	0.983	0.962	0.636	0.0
449482323	716	PREDICTED: pentatricopeptide repeat-cont	0.983	0.935	0.636	0.0
357467901	688	Pentatricopeptide repeat-containing prot	0.979	0.969	0.639	0.0
297841913	688	pentatricopeptide repeat-containing prot	0.938	0.928	0.646	0.0
15217493	689	pentatricopeptide repeat-containing prot	0.938	0.927	0.640	0.0
147774530	664	hypothetical protein VITISV_018576 [Viti	0.901	0.924	0.572	0.0
297741014	513	unnamed protein product [Vitis vinifera]	0.613	0.814	0.675	1e-174

>gi|225460139|ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Vitis vinifera]

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/677 (67%), Positives = 548/677 (80%), Gaps = 6/677 (0%)

Query: 4   TQALAVSLSLCVHSFPPNPISNNHQFFKLKASATKPESTYFQKRKKYHTKKS-AEKDAFP 62
           +Q  A  +SL + S  P+ I +++Q      + ++P  T F+ R K   KK  +EKDAFP
Sbjct: 52  SQKDAYPISLPLQSKNPHAIYSDNQ-----TTPSRPTQTQFRTRLKSPKKKPFSEKDAFP 106

Query: 63  SSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRS 122
            SLPLH KNP AI+ DIQRFARQ KLKEAL ILDY DQQGIPVN TTF++L+ ACV ++S
Sbjct: 107 MSLPLHTKNPHAIFSDIQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKS 166

Query: 123 LVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG 182
           L  G+ IH HIRINGLENN FLRTKLV MYTSCGS EDA  VFD  SS+SVY WNALLRG
Sbjct: 167 LTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSKSVYTWNALLRG 226

Query: 183 AVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFV 242
            VI+G++ YR  L  Y +MRELGV+LNVY+FSC+IKSFAGA+A  QGLK HALLIKNG V
Sbjct: 227 NVISGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQGLKAHALLIKNGLV 286

Query: 243 DYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWM 302
           D  ILRTSLIDMYFKCGKIKLAR +F+E  +RD+VVWG+MIAGF HNRL+ EAL+  RWM
Sbjct: 287 DSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFGHNRLQREALEYLRWM 346

Query: 303 IREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRD 362
            REGI PNSV++T +LPVIGE  A KLG+EVHAYV+K + YS+++F++S+L+DMYCKC D
Sbjct: 347 RREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCGD 406

Query: 363 MNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV 422
           M S  +VFY + ERN + WTALMSGYVSNGRL+QALRSIAWMQQEGFRPDVVTVATV+PV
Sbjct: 407 MASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPV 466

Query: 423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISW 482
           C++L+AL  GKEIH+YAVKN FLPNVSI TSLM+MYSKCG LDYS KLFD M+ RNVISW
Sbjct: 467 CAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISW 526

Query: 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK 542
           TAMIDS +ENG L +A+GVFRSMQLSKHRPDSVAMAR+LS+ G+L+ LKLGKEIHGQ+LK
Sbjct: 527 TAMIDSYVENGCLHEAVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILK 586

Query: 543 KDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSL 602
           KDF S+PFV+AE IKMYG  G +  AKL F A+P KGS+ WTAIIEAYGYNDL Q+A++L
Sbjct: 587 KDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINL 646

Query: 603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT 662
           F +M++ GF PNH+TFK +LSIC +A  AD+AC IFN+MSR Y+I+A  EHY  +I++L 
Sbjct: 647 FHQMQSDGFIPNHYTFKAVLSICERAELADDACLIFNLMSRRYRIKASNEHYSSIIELLN 706

Query: 663 RFGRIEEAHRFREMSSS 679
           R GR E+A RF +M S+
Sbjct: 707 RVGRTEDAQRFIQMRSA 723

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145077|ref|XP_002325518.1| predicted protein [Populus trichocarpa] gi|222862393|gb|EEE99899.1| predicted protein [Populus trichocarpa]

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/677 (66%), Positives = 551/677 (81%), Gaps = 8/677 (1%)

Query: 10  SLSLCVHSFPPNPISNN---HQFFKLKASA-TKPESTYFQKRKKYHTKKSAEKDAFPSSL 65
           SLS+ +H FP NP++ N    QF K+K+S  T+P  T  Q   K H ++  E+DAFP+SL
Sbjct: 5   SLSVHLHCFPQNPLNINITHRQFSKIKSSTQTQPVQT--QNPNKKH-QQFDERDAFPASL 61

Query: 66  PLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVE 125
           PLH+KNP+AIYKDIQRF+R+N+LK+AL+I+DYMDQQGIPVN TTF+ALI AC+R++SL +
Sbjct: 62  PLHKKNPQAIYKDIQRFSRKNQLKDALIIMDYMDQQGIPVNPTTFSALIAACIRSKSLTK 121

Query: 126 GRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDE-SSSESVYPWNALLRGAV 184
            + IHTH+RINGL+NN FLRTKLV MYTSCGS EDA+ VFDE +S+ +VYPWNAL+RG V
Sbjct: 122 AKEIHTHLRINGLQNNEFLRTKLVHMYTSCGSIEDAKSVFDECTSTATVYPWNALIRGTV 181

Query: 185 IAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDY 244
           I+GKKRY  VL  Y +MR  GV+LN YTFS VIKSFAGASAL QG KTHA++IKNG +  
Sbjct: 182 ISGKKRYGDVLSAYQEMRVNGVELNEYTFSNVIKSFAGASALKQGFKTHAIMIKNGMISS 241

Query: 245 LILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIR 304
            +LRT LIDMYFKCGK +LA  VF+E  +RDIV WG+MIAGFAHNR +WEALD  RWM+ 
Sbjct: 242 AVLRTCLIDMYFKCGKTRLAHNVFEELLERDIVAWGAMIAGFAHNRRQWEALDYVRWMVS 301

Query: 305 EGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMN 364
           EG+YPNSV++T +LPVIGE WAR+LGQEVH YVLK + YS EL ++S L+DMYCKC DM 
Sbjct: 302 EGMYPNSVIITSILPVIGEVWARRLGQEVHCYVLKMKGYSRELSIQSGLIDMYCKCGDMG 361

Query: 365 SAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCS 424
           S  RVFY + ERN + WTALMSGYVSNGRLEQALRS+ WMQQEG RPDVVTVATVIPVC+
Sbjct: 362 SGRRVFYGSRERNVVSWTALMSGYVSNGRLEQALRSVVWMQQEGCRPDVVTVATVIPVCA 421

Query: 425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTA 484
           +LK L HGKEIHA++VK  FLPNVS+ TSL+ MYSKCGVLDYS+KLFD ME RNVI+WTA
Sbjct: 422 KLKTLKHGKEIHAFSVKKLFLPNVSLTTSLIKMYSKCGVLDYSVKLFDGMEARNVIAWTA 481

Query: 485 MIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD 544
           MIDS +ENG +++A  VFR MQ SKHRPDSV MARMLS+  ++K LK GKEIHG +LKKD
Sbjct: 482 MIDSYVENGCINEAFNVFRFMQWSKHRPDSVTMARMLSICSKIKTLKFGKEIHGHILKKD 541

Query: 545 FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFD 604
           F S+PFV++E +KMYG CG +  A+ VF+AVPVKGS+TWTAIIEAYGYN L Q+A+ LFD
Sbjct: 542 FESIPFVSSELVKMYGSCGLVHSAESVFNAVPVKGSMTWTAIIEAYGYNSLWQDAIKLFD 601

Query: 605 KMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRF 664
           +MR+  FTPN FTFKV+LSIC++AGFAD+ACRIF +MS+ YK++   +HY I+I +L R 
Sbjct: 602 EMRSRKFTPNDFTFKVVLSICDEAGFADDACRIFELMSKRYKVKISGDHYAIIIGLLNRS 661

Query: 665 GRIEEAHRFREMSSSLS 681
           GR   A RF +MS+ LS
Sbjct: 662 GRTRAAQRFIDMSNLLS 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531824|ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Glycine max]

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/685 (65%), Positives = 548/685 (80%), Gaps = 23/685 (3%)

Query: 10  SLSLCVHSFPPNPISNNHQ-----------FFKLKASATKPESTYFQKRKKYHTKKS--- 55
           SLSLC   FPPNP ++  Q               K   TKP    F   +K+ TKK    
Sbjct: 7   SLSLC---FPPNPKTHIFQAFSFRPSPRSPPPPSKTHHTKPPR--FTTPRKHRTKKPKPF 61

Query: 56  AEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALIT 115
            EKDAFPSSLPLH KNP  I+KDI+RFARQNKLKEAL ILDY+DQ+GIPV+ TTF++++ 
Sbjct: 62  TEKDAFPSSLPLHNKNPIFIFKDIKRFARQNKLKEALTILDYVDQRGIPVDATTFSSVVA 121

Query: 116 ACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYP 175
           AC+R +SL +GR +HTHIRINGLENN FLRTKLV MYT+CGS EDA+K+FD    ESVYP
Sbjct: 122 ACIRAKSLPQGREVHTHIRINGLENNSFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYP 181

Query: 176 WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHAL 235
           WNALLRG V++GK++Y  VL  Y +MR LGV+LNVY+FS VIKSFAGA A  QGLKTH L
Sbjct: 182 WNALLRGTVVSGKRQYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGARAFSQGLKTHGL 241

Query: 236 LIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEA 295
           LIKNG VD  ILRTSLIDMYFKCGK++LA RVF+E  +RD+VVWG+M+AGFAHNRL+ E 
Sbjct: 242 LIKNGLVDNYILRTSLIDMYFKCGKVRLACRVFEEIPERDVVVWGAMLAGFAHNRLQREV 301

Query: 296 LDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVD 355
           L+  RWM+ EG+ PNSVV+TI++PVIGE  AR+LGQE HAYV+K + YS+ + V+SSL+D
Sbjct: 302 LEYVRWMVEEGVKPNSVVMTIVIPVIGEVCARRLGQEFHAYVVKTKSYSKLVPVQSSLID 361

Query: 356 MYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT 415
           MYCKC DM SA RVFY ++ERN + WTALMSGY +NG+LEQALRS  WMQQEGFRPDVVT
Sbjct: 362 MYCKCGDMISARRVFYGSKERNVVCWTALMSGYAANGKLEQALRSTIWMQQEGFRPDVVT 421

Query: 416 VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEME 475
           +ATV+PVC+QL+AL  GK+IHAYA+K+ FLPNVS+ +SLM MYSKCGV++YS +LFD ME
Sbjct: 422 LATVLPVCAQLRALEQGKQIHAYALKHWFLPNVSVASSLMTMYSKCGVVEYSRRLFDNME 481

Query: 476 VRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKE 535
            RNVISWTAMIDS IENG L +ALGV RSMQLSKHRPDSVA+ RMLSV G+ K +KLGKE
Sbjct: 482 QRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAIGRMLSVCGERKLVKLGKE 541

Query: 536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDL 595
           IHGQ+LK+DF SV FV+AE I MYG  G +  A LVF+AVPVKGS+TWTA+I AYGYN+L
Sbjct: 542 IHGQILKRDFTSVHFVSAELINMYGFFGDINKANLVFNAVPVKGSMTWTALIRAYGYNEL 601

Query: 596 CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL 655
            Q+A++LFD+MR   ++PNHFTF+ +LSIC++AGF D+ACRIFN M R YKIEA +EH+ 
Sbjct: 602 YQDAVNLFDQMR---YSPNHFTFEAILSICDKAGFVDDACRIFNSMPR-YKIEASKEHFA 657

Query: 656 IMIDILTRFGRIEEAHRFREMSSSL 680
           IM+ +LT  G++E+A RF +MSS L
Sbjct: 658 IMVRLLTHNGQLEKAQRFEQMSSFL 682

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447755|ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Cucumis sativus]

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/687 (63%), Positives = 549/687 (79%), Gaps = 17/687 (2%)

Query: 1   MESTQALAVSLSLCVHSFPPNPIS-------NNHQFFKLKASATKPES-----TYFQKRK 48
           ME + +  +SL L    F PN ++       + H+  ++K++   P S     + F+ RK
Sbjct: 1   MEISSSFIISLHL--QPFTPNSLAPATAICNSGHRLSRIKSTTDTPPSKIKIVSKFRNRK 58

Query: 49  KYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVT 108
           +      AEKDAFPSSLPLH KNP AIY+D+QRFARQNKLKEAL I+DY+DQQGIPVN T
Sbjct: 59  R---PTFAEKDAFPSSLPLHTKNPHAIYEDVQRFARQNKLKEALTIMDYVDQQGIPVNAT 115

Query: 109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES 168
           TF++LITACVRT+S+   + IH HIRINGLENN F+RT+LV MYT+CGS E+A+K+FDES
Sbjct: 116 TFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEEAQKLFDES 175

Query: 169 SSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQ 228
           SS+SVYPWNALLRG V+AG++ YR +L  Y +MR LGV+LNVY+F+ +IKSFAGASA  Q
Sbjct: 176 SSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFTQ 235

Query: 229 GLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAH 288
           GLK H LLIKNG +   +L T+L+DMYFKCGKIKLAR++F E  +RD+VVWGS+IAGFAH
Sbjct: 236 GLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERDVVVWGSIIAGFAH 295

Query: 289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELF 348
           NRL+ EAL+  R MI +GI PNSV+LT +LPVIGE WAR+LGQEVHAYV+K + YS+++F
Sbjct: 296 NRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQIF 355

Query: 349 VRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEG 408
           ++S+L+DMYCKC D+ S   VFY + ERN I WTALMSGY  NGRLEQA+RS+ WMQQEG
Sbjct: 356 IQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGRLEQAVRSVIWMQQEG 415

Query: 409 FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468
           FRPD+VTVAT++PVC+QL+AL  GKEIHAYA+KN FLPNVSI++SLM+MYSKCGV+DY+L
Sbjct: 416 FRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPNVSIVSSLMVMYSKCGVMDYTL 475

Query: 469 KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK 528
           KLF+ ME RNVI WTAMIDS IEN    +A+ +FR+MQLSKHRPD+V M+R+L +  + K
Sbjct: 476 KLFNGMEQRNVILWTAMIDSYIENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQK 535

Query: 529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIE 588
            LK+GKEIHGQVLK+ F  V FV+AE +K+YG CG ++ AK+VF+A+PVKG +TWTAIIE
Sbjct: 536 MLKMGKEIHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIE 595

Query: 589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE 648
           AYG +   QEA+ LFD+MR+ G +PNHFTFKV+LSIC +AGF DEA RIF +MS  YKI+
Sbjct: 596 AYGESGEFQEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKIK 655

Query: 649 ALEEHYLIMIDILTRFGRIEEAHRFRE 675
             EEHY ++I ILTRFGR+EEA R +E
Sbjct: 656 PSEEHYSLVIAILTRFGRLEEARRCKE 682

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482323|ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Cucumis sativus]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/687 (63%), Positives = 549/687 (79%), Gaps = 17/687 (2%)

Query: 1   MESTQALAVSLSLCVHSFPPNPIS-------NNHQFFKLKASATKPES-----TYFQKRK 48
           ME + +  +SL L    F PN ++       + H+  ++K++   P S     + F+ RK
Sbjct: 1   MEISSSFIISLHL--QPFTPNSLAPATAICNSGHRLSRIKSTTDTPPSKIKIVSKFRNRK 58

Query: 49  KYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVT 108
           +      AEKDAFPSSLPLH KNP AIY+D+QRFARQNKLKEAL I+DY+DQQGIPVN T
Sbjct: 59  R---PTFAEKDAFPSSLPLHTKNPHAIYEDVQRFARQNKLKEALTIMDYVDQQGIPVNAT 115

Query: 109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES 168
           TF++LITACVRT+S+   + IH HIRINGLENN F+RT+LV MYT+CGS E+A+K+FDES
Sbjct: 116 TFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEEAQKLFDES 175

Query: 169 SSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQ 228
           SS+SVYPWNALLRG V+AG++ YR +L  Y +MR LGV+LNVY+F+ +IKSFAGASA  Q
Sbjct: 176 SSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFTQ 235

Query: 229 GLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAH 288
           GLK H LLIKNG +   +L T+L+DMYFKCGKIKLAR++F E  +RD+VVWGS+IAGFAH
Sbjct: 236 GLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERDVVVWGSIIAGFAH 295

Query: 289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELF 348
           NRL+ EAL+  R MI +GI PNSV+LT +LPVIGE WAR+LGQEVHAYV+K + YS+++F
Sbjct: 296 NRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTKSYSKQIF 355

Query: 349 VRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEG 408
           ++S+L+DMYCKC D+ S   VFY + ERN I WTALMSGY  NGRLEQA+RS+ WMQQEG
Sbjct: 356 IQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYALNGRLEQAVRSVIWMQQEG 415

Query: 409 FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468
           FRPD+VTVAT++PVC+QL+AL  GKEIHAYA+KN FLPNVSI++SLM+MYSKCGV+DY+L
Sbjct: 416 FRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPNVSIVSSLMVMYSKCGVMDYTL 475

Query: 469 KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK 528
           KLF+ ME RNVI WTAMIDS IEN    +A+ +FR+MQLSKHRPD+V M+R+L +  + K
Sbjct: 476 KLFNGMEQRNVILWTAMIDSYIENQCPHEAIDIFRAMQLSKHRPDTVTMSRILYICSEQK 535

Query: 529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIE 588
            LK+GKEIHGQVLK+ F  V FV+AE +K+YG CG ++ AK+VF+A+PVKG +TWTAIIE
Sbjct: 536 MLKMGKEIHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIE 595

Query: 589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE 648
           AYG +   QEA+ LFD+MR+ G +PNHFTFKV+LSIC +AGF DEA RIF +MS  YKI+
Sbjct: 596 AYGESGEFQEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKIK 655

Query: 649 ALEEHYLIMIDILTRFGRIEEAHRFRE 675
             EEHY ++I ILTRFGR+EEA R +E
Sbjct: 656 PSEEHYSLVIAILTRFGRLEEARRCKE 682

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467901|ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355505290|gb|AES86432.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/688 (63%), Positives = 545/688 (79%), Gaps = 21/688 (3%)

Query: 10  SLSLCVHSFPPNPISNNHQFFKLKASATKPESTYFQKRKKYHTKKS------------AE 57
           S+S     FPPN   N  + F  K S++  ++T+ +K+ K+                 +E
Sbjct: 5   SVSSLSQHFPPNHKPN--KIFNFKPSSSF-KTTHQRKKPKFTIPNKNNNKNNNVKKPFSE 61

Query: 58  KDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITAC 117
           +DAFP SLPLH KNP +IYKDI+ FARQNKL EAL ILDY+DQ GIPVN TTF++LI AC
Sbjct: 62  EDAFPCSLPLHNKNPISIYKDIKNFARQNKLNEALAILDYVDQNGIPVNATTFSSLIAAC 121

Query: 118 VRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSES-VYPW 176
           +RT SL  G+ IHTHIRINGLE N FL TKLV+MYTSCGS EDA K+FDE   ES VYPW
Sbjct: 122 IRTNSLSIGKQIHTHIRINGLEKNTFLLTKLVQMYTSCGSLEDALKLFDELPDESSVYPW 181

Query: 177 NALLRGAVIAG--KKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHA 234
           NALLRG V+ G  KK+Y  V+  Y KMRELGV+LNVY+FS VIKSFA A A  QGLKTHA
Sbjct: 182 NALLRGTVVFGGRKKQYIDVVKTYSKMRELGVELNVYSFSSVIKSFAAAPAFYQGLKTHA 241

Query: 235 LLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR--DIVVWGSMIAGFAHNRLR 292
           LLIKNG VD  ILRT LID+YFKCGK+KLARRVF+E  +R  D+VVWG+M++GF+HNRL+
Sbjct: 242 LLIKNGLVDSDILRTCLIDLYFKCGKVKLARRVFEEIPERERDVVVWGTMLSGFSHNRLQ 301

Query: 293 WEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSS 352
            E L+  +WM+ EGIYPNSV++TI+LPVIGE   R+LGQEVHA+VLK + Y+E++ V+S+
Sbjct: 302 REVLEYVKWMVEEGIYPNSVIMTIVLPVIGEVCKRRLGQEVHAFVLKTKSYAEKVPVQSA 361

Query: 353 LVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD 412
           L+DMYCKC D++SA  VFY + ERN + WTALMSGY S GRLEQALR++ WMQQEGFRPD
Sbjct: 362 LIDMYCKCGDLSSARAVFYSSPERNVVCWTALMSGYASVGRLEQALRAVIWMQQEGFRPD 421

Query: 413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFD 472
           VVTVATV+P+C+QL+AL  GK+IHAYA+K+ FLPNVS+ +SL++MYSKCGV++YS +LF 
Sbjct: 422 VVTVATVLPICAQLRALEQGKQIHAYALKHWFLPNVSLSSSLVVMYSKCGVVEYSTRLFG 481

Query: 473 EMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL 532
           +ME RNVISWTAMIDS IENG L +ALGV RSMQLSKHRPDSVAM+RMLSV G+LK LK 
Sbjct: 482 DMEQRNVISWTAMIDSYIENGHLYEALGVIRSMQLSKHRPDSVAMSRMLSVCGELKLLKH 541

Query: 533 GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGY 592
           GKEIHGQ+LK+DF SV FV+AE I MYG  G ++ A LVF AVPVKGS+TWTA+I AY Y
Sbjct: 542 GKEIHGQILKRDFTSVHFVSAELINMYGALGDVDKANLVFSAVPVKGSMTWTALIRAYEY 601

Query: 593 NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE 652
           N+L Q A+ LFD+MR+  F+PN FTF+V+LS+C +AGF ++A +IFN+M + YKIEA +E
Sbjct: 602 NELYQGAIDLFDQMRSDRFSPNPFTFEVILSVCERAGFVNDASKIFNLMPK-YKIEASKE 660

Query: 653 HYLIMIDILTRFGRIEEAHRFREMSSSL 680
           H+ IM+ +LTR+G++E+A RF +MSS L
Sbjct: 661 HFAIMVRLLTRYGQLEKAQRFAQMSSFL 688

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841913|ref|XP_002888838.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334679|gb|EFH65097.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/645 (64%), Positives = 515/645 (79%), Gaps = 6/645 (0%)

Query: 38  KPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDY 97
           +P ++  +K K +      E+DAFPSSLPLH KNP +I++DIQRFAR+N L++AL ILDY
Sbjct: 46  RPSTSPAKKPKPFR-----ERDAFPSSLPLHSKNPHSIHRDIQRFARKNNLEDALTILDY 100

Query: 98  MDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGS 157
           ++Q+GIPVN TTF+AL+ ACVR +SL+ G+ +H HIRINGLE+N F+RTKLV MYT+CGS
Sbjct: 101 LEQRGIPVNATTFSALLAACVRRKSLLHGKQVHVHIRINGLESNEFIRTKLVHMYTACGS 160

Query: 158 FEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI 217
             DA+KVFDES+S +VY WNALLRG VI+GKKRY+ VL  + +MRELGV LNVY+FS V 
Sbjct: 161 VRDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSFSNVF 220

Query: 218 KSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIV 277
           KSFAGASAL QGLKTHAL IKNG  + + L+TSL+DMYFKCGK+ LARRVFDE  +RDIV
Sbjct: 221 KSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIV 280

Query: 278 VWGSMIAGFAHNRLRWEALDCARWMI-REGIYPNSVVLTILLPVIGEAWARKLGQEVHAY 336
           VWG+MIAG AHN+ +WEAL   R MI  EGIYPNSV+LT +LPV+G+  A KLG+EVHA+
Sbjct: 281 VWGAMIAGLAHNKRQWEALGLFRSMISEEGIYPNSVILTTILPVLGDVKALKLGKEVHAH 340

Query: 337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQ 396
           VLK + Y E+ FV S L+D+YCKC DM S  RVFY +++RN I WTALMSGY +NGR +Q
Sbjct: 341 VLKMKNYLEQPFVHSGLIDLYCKCGDMVSGRRVFYGSKQRNAISWTALMSGYAANGRFDQ 400

Query: 397 ALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMI 456
           ALRSI WMQQEGF+PDVVT+ATV+PVC++L+A+  GKEIH YA+KN FLPNVS++TSLM+
Sbjct: 401 ALRSIVWMQQEGFKPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSLMV 460

Query: 457 MYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA 516
           MYSKCGV +Y ++LFD +E RNV +WTAMID  +ENG L   + VFRSM LSKHRPDSV 
Sbjct: 461 MYSKCGVPEYPVRLFDRLEQRNVKAWTAMIDCYVENGDLRAGIEVFRSMLLSKHRPDSVT 520

Query: 517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576
           M R+L+V   LKALKLGKE+HG +LKK+F S+PFV+A+ IKMYG CG L  A   FDAV 
Sbjct: 521 MGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVSAKIIKMYGQCGDLRSANFSFDAVV 580

Query: 577 VKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636
           VKGS+TWTAIIEAYGYN   ++A+  F++M + GFTPN FTF  +LSIC+QAGFADEA R
Sbjct: 581 VKGSLTWTAIIEAYGYNGRFRDAIKCFEQMVSRGFTPNTFTFTAILSICSQAGFADEAYR 640

Query: 637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS 681
            FN+M R Y +   EEHY ++I++L RFGR+EEA R   MSSS S
Sbjct: 641 FFNLMLRMYNLHPSEEHYSLVIELLNRFGRVEEAQRLEVMSSSSS 685

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217493|ref|NP_177302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169718|sp|Q9C9I3.1|PP115_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71460, chloroplastic; Flags: Precursor gi|12323723|gb|AAG51819.1|AC016163_8 unknown protein; 45757-47826 [Arabidopsis thaliana] gi|332197082|gb|AEE35203.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/645 (64%), Positives = 510/645 (79%), Gaps = 6/645 (0%)

Query: 38  KPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDY 97
           +P ++  +K K +      E+DAFPSSLPLH KNP  I++DIQ FARQN L+ AL ILDY
Sbjct: 47  RPSTSPAKKPKPFR-----ERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVALTILDY 101

Query: 98  MDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGS 157
           ++Q+GIPVN TTF+AL+ ACVR +SL+ G+ +H HIRINGLE+N FLRTKLV MYT+CGS
Sbjct: 102 LEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGS 161

Query: 158 FEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI 217
            +DA+KVFDES+S +VY WNALLRG VI+GKKRY+ VL  + +MRELGV LNVY+ S V 
Sbjct: 162 VKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLSNVF 221

Query: 218 KSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIV 277
           KSFAGASAL QGLKTHAL IKNG  + + L+TSL+DMYFKCGK+ LARRVFDE  +RDIV
Sbjct: 222 KSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIV 281

Query: 278 VWGSMIAGFAHNRLRWEALDCARWMI-REGIYPNSVVLTILLPVIGEAWARKLGQEVHAY 336
           VWG+MIAG AHN+ +WEAL   R MI  E IYPNSV+LT +LPV+G+  A KLG+EVHA+
Sbjct: 282 VWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGKEVHAH 341

Query: 337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQ 396
           VLK++ Y E+ FV S L+D+YCKC DM S  RVFY +++RN I WTALMSGY +NGR +Q
Sbjct: 342 VLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRFDQ 401

Query: 397 ALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMI 456
           ALRSI WMQQEGFRPDVVT+ATV+PVC++L+A+  GKEIH YA+KN FLPNVS++TSLM+
Sbjct: 402 ALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSLMV 461

Query: 457 MYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA 516
           MYSKCGV +Y ++LFD +E RNV +WTAMID  +EN  L   + VFR M LSKHRPDSV 
Sbjct: 462 MYSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKHRPDSVT 521

Query: 517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVP 576
           M R+L+V   LKALKLGKE+HG +LKK+F S+PFV+A  IKMYG CG L  A   FDAV 
Sbjct: 522 MGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVSARIIKMYGKCGDLRSANFSFDAVA 581

Query: 577 VKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR 636
           VKGS+TWTAIIEAYG N+L ++A++ F++M + GFTPN FTF  +LSIC+QAGF DEA R
Sbjct: 582 VKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVDEAYR 641

Query: 637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS 681
            FN+M R Y ++  EEHY ++I++L R GR+EEA R   MSSS S
Sbjct: 642 FFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEAQRLAVMSSSSS 686

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774530|emb|CAN65544.1| hypothetical protein VITISV_018576 [Vitis vinifera]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/658 (57%), Positives = 474/658 (72%), Gaps = 44/658 (6%)

Query: 38  KPESTYFQKRKKYHTKKS-AEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILD 96
           KP ST+ +   K     + ++KDA+P SLPL  KNP AIY D Q    +    +    L 
Sbjct: 33  KPSSTHLKTPLKSPENLTFSQKDAYPISLPLQSKNPHAIYSDNQTTPSRPTQTQFRTRLK 92

Query: 97  ------YMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK 150
                 + ++   P+++                     +HT         N       ++
Sbjct: 93  SPKKKPFSEKDAFPMSLP--------------------LHT--------KNPHAIFSDIQ 124

Query: 151 MYTSCGSFEDAEKVFDESSSESV----YPWNALLRGAVIA-----GKKRYRGVLFNYMKM 201
            +   G  ++A  + D    + +      +++LLR  V +     G++ YR  L  Y +M
Sbjct: 125 RFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGRRHYREALSTYSEM 184

Query: 202 RELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKI 261
           RELGV+LNVY+FSC+IKSFAGA+A  QGLK HALLIKNG VD  ILRTSLIDMYFKCGKI
Sbjct: 185 RELGVELNVYSFSCMIKSFAGATAFRQGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKI 244

Query: 262 KLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVI 321
           KLAR +F+E  +RD+VVWG+MIAGF HNRL+ EAL+  RWM REGI PNSV++T +LPVI
Sbjct: 245 KLARLMFEEIVERDVVVWGAMIAGFGHNRLQREALEYLRWMRREGICPNSVIMTTILPVI 304

Query: 322 GEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILW 381
           GE  A KLG+EVHAYV+K + YS+++F++S+L+DMYCKC DM S  +VFY + ERN + W
Sbjct: 305 GEVGAWKLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSW 364

Query: 382 TALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK 441
           TALMSGYVSNGRL+QALRSIAWMQQEGFRPDVVTVATV+PVC++L+AL  GKEIH+YAVK
Sbjct: 365 TALMSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVK 424

Query: 442 NQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGV 501
           N FLPNVSI TSLM+MYSKCG LDYS KLFD M+ RNVISWTAMIDS +ENG L +A+GV
Sbjct: 425 NGFLPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHEAVGV 484

Query: 502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM 561
           FRSMQLSKHRPDSVAMAR+LS+ G+L+ LKLGKEIHGQ+LKKDF S+PFV+AE IKMYG 
Sbjct: 485 FRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGK 544

Query: 562 CGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVL 621
            G +  AKL F A+P KGS+ WTAIIEAYGYNDL Q+A++LF +M++ GF PNH+TFK +
Sbjct: 545 FGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAV 604

Query: 622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS 679
           LSIC +A  AD+AC IFN+MSR Y+I+A  EHY  +I++L R GR E+A RF +M S+
Sbjct: 605 LSICERAELADDACLIFNLMSRRYRIKASNEHYSSIIELLNRVGRTEDAQRFIQMRSA 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741014|emb|CBI31326.3| unnamed protein product [Vitis vinifera]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/438 (67%), Positives = 353/438 (80%), Gaps = 20/438 (4%)

Query: 228 QGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFA 287
           QGLK HALLIKNG VD  ILRTSLIDMYFKCGKIKLAR +F+E  +RD+VVWG+MIAGF 
Sbjct: 62  QGLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFG 121

Query: 288 HNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEEL 347
           HNRL+ EAL+  RWM REGI PNSV++T +LPVIGE  A KLG+EVHAYV+K + YS+++
Sbjct: 122 HNRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQV 181

Query: 348 FVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQE 407
           F++S+L+DMYCKC DM S  +VFY + ERN + WTALMSGYVSNGRL+QALRSIAWMQQE
Sbjct: 182 FIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWMQQE 241

Query: 408 GFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS 467
           GFRPDVVTVATV+PVC++L+AL  GKEIH+YAVKN FLPNVSI TSLM+MYSKCG LDYS
Sbjct: 242 GFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCGNLDYS 301

Query: 468 LKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL 527
            KLFD M+ RNVISWTAMID                    S HRPDSVAMAR+LS+ G+L
Sbjct: 302 FKLFDGMDARNVISWTAMID--------------------SYHRPDSVAMARILSICGEL 341

Query: 528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAII 587
           + LKLGKEIHGQ+LKKDF S+PFV+AE IKMYG  G +  AKL F A+P KGS+ WTAII
Sbjct: 342 RVLKLGKEIHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAII 401

Query: 588 EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI 647
           EAYGYNDL Q+A++LF +M++ GF PNH+TFK +LSIC +A  AD+AC IFN+MSR Y+I
Sbjct: 402 EAYGYNDLYQDAINLFHQMQSDGFIPNHYTFKAVLSICERAELADDACLIFNLMSRRYRI 461

Query: 648 EALEEHYLIMIDILTRFG 665
           +A  EHY  +I++L R G
Sbjct: 462 KASNEHYSSIIELLNRLG 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	681
TAIR|locus:2825319	689	AT1G71460 "AT1G71460" [Arabido	0.948	0.937	0.640	5.8e-224
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.869	0.679	0.324	1.7e-89
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.894	0.684	0.317	1.7e-82
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.832	0.700	0.318	4.1e-81
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.885	0.703	0.295	5.2e-81
TAIR|locus:2083961	768	AT3G53360 "AT3G53360" [Arabido	0.866	0.768	0.3	6.6e-81
TAIR|locus:2175653	677	AT5G39350 "AT5G39350" [Arabido	0.825	0.830	0.309	2.6e-79
TAIR|locus:2131631	804	AT4G35130 "AT4G35130" [Arabido	0.769	0.651	0.329	1.3e-77
TAIR|locus:2089333	654	AT3G16610 "AT3G16610" [Arabido	0.823	0.857	0.313	2.1e-77
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.812	0.698	0.313	3.5e-75

TAIR|locus:2825319 AT1G71460 "AT1G71460" [Arabidopsis thaliana (taxid:3702)]

 Score = 2162 (766.1 bits), Expect = 5.8e-224, P = 5.8e-224
 Identities = 417/651 (64%), Positives = 512/651 (78%)

Query:    32 LKASATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEA 91
             ++ S T+  ST     KK   K   E+DAFPSSLPLH KNP  I++DIQ FARQN L+ A
Sbjct:    40 IRPSRTRRPST--SPAKK--PKPFRERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVA 95

Query:    92 LVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKM 151
             L ILDY++Q+GIPVN TTF+AL+ ACVR +SL+ G+ +H HIRINGLE+N FLRTKLV M
Sbjct:    96 LTILDYLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHM 155

Query:   152 YTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY 211
             YT+CGS +DA+KVFDES+S +VY WNALLRG VI+GKKRY+ VL  + +MRELGV LNVY
Sbjct:   156 YTACGSVKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVY 215

Query:   212 TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDET 271
             + S V KSFAGASAL QGLKTHAL IKNG  + + L+TSL+DMYFKCGK+ LARRVFDE 
Sbjct:   216 SLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEI 275

Query:   272 GDRDIVVWGSMIAGFAHNRLRWEALDCARWMI-REGIYPNSVVLTILLPVIGEAWARKLG 330
              +RDIVVWG+MIAG AHN+ +WEAL   R MI  E IYPNSV+LT +LPV+G+  A KLG
Sbjct:   276 VERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLG 335

Query:   331 QEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVS 390
             +EVHA+VLK++ Y E+ FV S L+D+YCKC DM S  RVFY +++RN I WTALMSGY +
Sbjct:   336 KEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAA 395

Query:   391 NGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSI 450
             NGR +QALRSI WMQQEGFRPDVVT+ATV+PVC++L+A+  GKEIH YA+KN FLPNVS+
Sbjct:   396 NGRFDQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSL 455

Query:   451 ITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKH 510
             +TSLM+MYSKCGV +Y ++LFD +E RNV +WTAMID  +EN  L   + VFR M LSKH
Sbjct:   456 VTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKH 515

Query:   511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL 570
             RPDSV M R+L+V   LKALKLGKE+HG +LKK+F S+PFV+A  IKMYG CG L  A  
Sbjct:   516 RPDSVTMGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVSARIIKMYGKCGDLRSANF 575

Query:   571 VFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF 630
              FDAV VKGS+TWTAIIEAYG N+L ++A++ F++M + GFTPN FTF  +LSIC+QAGF
Sbjct:   576 SFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGF 635

Query:   631 ADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSLS 681
              DEA R FN+M R Y ++  EEHY ++I++L R GR+EEA R   MSSS S
Sbjct:   636 VDEAYRFFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEAQRLAVMSSSSS 686

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
 Identities = 194/598 (32%), Positives = 326/598 (54%)

Query:    79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL 138
             ++RF     L+ A+ +L    +  I  +  T  +++  C  ++SL +G+ +   IR NG 
Sbjct:    68 LRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGF 125

Query:   139 ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNY 198
               +  L +KL  MYT+CG  ++A +VFDE   E    WN L+     +G   + G +  +
Sbjct:   126 VIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD--FSGSIGLF 183

Query:   199 MKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKC 258
              KM   GV+++ YTFSCV KSF+   ++  G + H  ++K+GF +   +  SL+  Y K 
Sbjct:   184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243

Query:   259 GKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILL 318
              ++  AR+VFDE  +RD++ W S+I G+  N L  + L     M+  GI  +   +  + 
Sbjct:   244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303

Query:   319 PVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNE 378
                 ++    LG+ VH+  +K     E+ F  ++L+DMY KC D++SA  VF E  +R+ 
Sbjct:   304 AGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMYSKCGDLDSAKAVFREMSDRSV 362

Query:   379 ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438
             + +T++++GY   G   +A++    M++EG  PDV TV  V+  C++ + L+ GK +H +
Sbjct:   363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422

Query:   439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA 498
               +N    ++ +  +LM MY+KCG +  +  +F EM V+++ISW  +I    +N   ++A
Sbjct:   423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482

Query:   499 LGVFRSMQLSKH-RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK 557
             L +F  +   K   PD   +A +L     L A   G+EIHG +++  + S   VA   + 
Sbjct:   483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542

Query:   558 MYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT 617
             MY  CG L  A ++FD +  K  ++WT +I  YG +   +EA++LF++MR  G   +  +
Sbjct:   543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602

Query:   618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFRE 675
             F  LL  C+ +G  DE  R FN+M    KIE   EHY  ++D+L R G + +A+RF E
Sbjct:   603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIE 660

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 201/634 (31%), Positives = 325/634 (51%)

Query:    62 PSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQ--QGIPVNVTTFNALITACVR 119
             PS      ++P      ++   R N L+EA  +L Y+D    GI  +   F AL+ A   
Sbjct:    52 PSIFISQSRSPEWWIDLLRSKVRSNLLREA--VLTYVDMIVLGIKPDNYAFPALLKAVAD 109

Query:   120 TRSLVEGRLIHTHI-RIN-GLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWN 177
              + +  G+ IH H+ +   G+++     T LV +Y  CG F    KVFD  S  +   WN
Sbjct:   110 LQDMELGKQIHAHVYKFGYGVDSVTVANT-LVNLYRKCGDFGAVYKVFDRISERNQVSWN 168

Query:   178 ALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGA---SALMQGLKTHA 234
             +L+    +   +++   L  +  M +  V+ + +T   V+ + +       LM G + HA
Sbjct:   169 SLISS--LCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query:   235 LLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE 294
               ++ G ++  I+ T L+ MY K GK+  ++ +    G RD+V W ++++    N    E
Sbjct:   227 YGLRKGELNSFIINT-LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLE 285

Query:   295 ALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLV 354
             AL+  R M+ EG+ P+   ++ +LP        + G+E+HAY LKN    E  FV S+LV
Sbjct:   286 ALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALV 345

Query:   355 DMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQE-GFRPDV 413
             DMYC C+ + S  RVF    +R   LW A+++GY  N   ++AL     M++  G   + 
Sbjct:   346 DMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANS 405

Query:   414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE 473
              T+A V+P C +  A +  + IH + VK     +  +  +LM MYS+ G +D ++++F +
Sbjct:   406 TTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGK 465

Query:   474 MEVRNVISWTAMIDSCIENGRLDDALGVFRSMQ-----LSKH------RPDSVAMARMLS 522
             ME R++++W  MI   + +   +DAL +   MQ     +SK       +P+S+ +  +L 
Sbjct:   466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query:   523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSIT 582
                 L AL  GKEIH   +K + A+   V +  + MY  CG L+ ++ VFD +P K  IT
Sbjct:   526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585

Query:   583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS 642
             W  II AYG +   QEA+ L   M   G  PN  TF  + + C+ +G  DE  RIF VM 
Sbjct:   586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645

Query:   643 RGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM 676
               Y +E   +HY  ++D+L R GRI+EA++   M
Sbjct:   646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 182/571 (31%), Positives = 301/571 (52%)

Query:   103 IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAE 162
             IP NV    A +    R  SL E R I   +  NGL    F +TKLV ++   GS ++A 
Sbjct:    31 IPANVYEHPAALLL-ERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAA 89

Query:   163 KVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG 222
             +VF+   S+    ++ +L+G   A        L  +++MR   V+  VY F+ ++K    
Sbjct:    90 RVFEPIDSKLNVLYHTMLKG--FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGD 147

Query:   223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSM 282
              + L  G + H LL+K+GF   L   T L +MY KC ++  AR+VFD   +RD+V W ++
Sbjct:   148 EAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTI 207

Query:   283 IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNER 342
             +AG++ N +   AL+  + M  E + P+ + +  +LP +       +G+E+H Y +++  
Sbjct:   208 VAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG- 266

Query:   343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIA 402
             +   + + ++LVDMY KC  + +A ++F    ERN + W +++  YV N   ++A+    
Sbjct:   267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326

Query:   403 WMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG 462
              M  EG +P  V+V   +  C+ L  L  G+ IH  +V+     NVS++ SL+ MY KC 
Sbjct:   327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386

Query:   463 VLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS 522
              +D +  +F +++ R ++SW AMI    +NGR  DAL  F  M+    +PD+     +++
Sbjct:   387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446

Query:   523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSIT 582
                +L      K IHG V++       FV    + MY  CG +  A+L+FD +  +   T
Sbjct:   447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query:   583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS 642
             W A+I+ YG +   + AL LF++M+ G   PN  TF  ++S C+ +G  +   + F +M 
Sbjct:   507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566

Query:   643 RGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673
               Y IE   +HY  M+D+L R GR+ EA  F
Sbjct:   567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 180/609 (29%), Positives = 314/609 (51%)

Query:    65 LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLV 124
             L L   + R     I  F R   L +AL     M   G+  +V+TF  L+ ACV  ++  
Sbjct:    96 LDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK 155

Query:   125 EGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAV 184
                 +   +   G++ N F+ + L+K Y   G  +   K+FD    +    WN +L G  
Sbjct:   156 GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYA 215

Query:   185 IAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDY 244
               G      V+  +  MR   +  N  TF CV+   A    +  G++ H L++ +G VD+
Sbjct:   216 KCGA--LDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSG-VDF 272

Query:   245 L-ILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMI 303
                ++ SL+ MY KCG+   A ++F      D V W  MI+G+  + L  E+L     MI
Sbjct:   273 EGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMI 332

Query:   304 REGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDM 363
               G+ P+++  + LLP + +    +  +++H Y++++   S ++F+ S+L+D Y KCR +
Sbjct:   333 SSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHS-ISLDIFLTSALIDAYFKCRGV 391

Query:   364 NSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVC 423
             + A  +F +    + +++TA++SGY+ NG    +L    W+ +    P+ +T+ +++PV 
Sbjct:   392 SMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVI 451

Query:   424 SQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWT 483
               L AL  G+E+H + +K  F    +I  +++ MY+KCG ++ + ++F+ +  R+++SW 
Sbjct:   452 GILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWN 511

Query:   484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK 543
             +MI  C ++     A+ +FR M +S    D V+++  LS    L +   GK IHG ++K 
Sbjct:   512 SMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKH 571

Query:   544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLF 603
               AS  +  +  I MY  CG L+ A  VF  +  K  ++W +II A G +   +++L LF
Sbjct:   572 SLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLF 631

Query:   604 DKM-RNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT 662
              +M    G  P+  TF  ++S C   G  DE  R F  M+  Y I+  +EHY  ++D+  
Sbjct:   632 HEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFG 691

Query:   663 RFGRIEEAH 671
             R GR+ EA+
Sbjct:   692 RAGRLTEAY 700

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 180/600 (30%), Positives = 317/600 (52%)

Query:    79 IQRFARQNKLKEALVILDYMDQQG-IPVNVTTFNALITACVRTRSLVEGRLIHTHIRING 137
             I    + N  +EAL   D+  +     + + T+ +LI AC  +RSL +GR IH HI  + 
Sbjct:    38 INSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSN 97

Query:   138 LENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFN 197
              + +  L   ++ MY  CGS  DA +VFD     ++  + +++ G    G+      L  
Sbjct:    98 CKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRL-- 155

Query:   198 YMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFK 257
             Y+KM +  +  + + F  +IK+ A +S +  G + HA +IK     +LI + +LI MY +
Sbjct:   156 YLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215

Query:   258 CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIY-PNSVVLTI 316
               ++  A RVF     +D++ W S+IAGF+     +EAL   + M+  G++ PN  +   
Sbjct:   216 FNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 275

Query:   317 LLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER 376
              L           G ++H   +K+E     +    SL DMY +C  +NSA RVF + E  
Sbjct:   276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAI-AGCSLCDMYARCGFLNSARRVFDQIERP 334

Query:   377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK--ALNHGKE 434
             +   W  +++G  +NG  ++A+   + M+  GF PD +++ +++  C+Q K  AL+ G +
Sbjct:   335 DTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL--CAQTKPMALSQGMQ 392

Query:   435 IHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR-NVISWTAMIDSCIENG 493
             IH+Y +K  FL ++++  SL+ MY+ C  L     LF++     + +SW  ++ +C+++ 
Sbjct:   393 IHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHE 452

Query:   494 RLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA 553
             +  + L +F+ M +S+  PD + M  +L    ++ +LKLG ++H   LK   A   F+  
Sbjct:   453 QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKN 512

Query:   554 ENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP 613
               I MY  CG L  A+ +FD++  +  ++W+ +I  Y  +   +EAL LF +M++ G  P
Sbjct:   513 GLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEP 572

Query:   614 NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673
             NH TF  +L+ C+  G  +E  +++  M   + I   +EH   ++D+L R GR+ EA RF
Sbjct:   573 NHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERF 632

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 177/572 (30%), Positives = 299/572 (52%)

Query:   106 NVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVF 165
             +V  + +L+     T+S+ + + +H H+ I G   +G + + L   Y  CG    A K+F
Sbjct:    14 SVKQYQSLLNHFAATQSISKTKALHCHV-ITGGRVSGHILSTLSVTYALCGHITYARKLF 72

Query:   166 DESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQL--NVYTFSCVIKSFAGA 223
             +E    S+  +N ++R  V  G   Y   +  +++M   GV+   + YT+  V K+    
Sbjct:    73 EEMPQSSLLSYNIVIRMYVREGL--YHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGEL 130

Query:   224 SALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMI 283
              ++  GL  H  ++++ F     ++ +L+ MY   GK+++AR VFD   +RD++ W +MI
Sbjct:   131 KSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMI 190

Query:   284 AGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERY 343
             +G+  N    +AL    WM+ E +  +   +  +LPV G     ++G+ VH  V + +R 
Sbjct:   191 SGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLV-EEKRL 249

Query:   344 SEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAW 403
              +++ V+++LV+MY KC  M+ A  VF   E R+ I WT +++GY  +G +E AL     
Sbjct:   250 GDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRL 309

Query:   404 MQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463
             MQ EG RP+ VT+A+++ VC     +N GK +H +AV+ Q   ++ I TSL+ MY+KC  
Sbjct:   310 MQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKR 369

Query:   464 LDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523
             +D   ++F      +   W+A+I  C++N  + DALG+F+ M+     P+   +  +L  
Sbjct:   370 VDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPA 429

Query:   524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGS--- 580
                L  L+    IH  + K  F S    A   + +Y  CG LE A  +F+ +  K     
Sbjct:   430 YAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKD 489

Query:   581 -ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFN 639
              + W A+I  YG +     AL +F +M   G TPN  TF   L+ C+ +G  +E   +F 
Sbjct:   490 VVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFR 549

Query:   640 VMSRGYKIEALEEHYLIMIDILTRFGRIEEAH 671
              M   YK  A   HY  ++D+L R GR++EA+
Sbjct:   550 FMLEHYKTLARSNHYTCIVDLLGRAGRLDEAY 581

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2131631 AT4G35130 "AT4G35130" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 175/531 (32%), Positives = 289/531 (54%)

Query:   146 TKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELG 205
             T+ ++ +      EDA ++FDE +    + WN +++G    G      V F Y +M   G
Sbjct:    68 TRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLY-IEAVQF-YSRMVFAG 125

Query:   206 VQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLAR 265
             V+ + +T+  VIKS AG S+L +G K HA++IK GFV  + +  SLI +Y K G    A 
Sbjct:   126 VKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAE 185

Query:   266 RVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAW 325
             +VF+E  +RDIV W SMI+G+      + +L   + M++ G  P+       L      +
Sbjct:   186 KVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVY 245

Query:   326 ARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALM 385
             + K+G+E+H + +++   + ++ V +S++DMY K  +++ A R+F    +RN + W  ++
Sbjct:   246 SPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMI 305

Query:   386 SGYVSNGRLEQALRSIAWM-QQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQF 444
               Y  NGR+  A      M +Q G +PDV+T   ++P      A+  G+ IH YA++  F
Sbjct:   306 GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGF 361

Query:   445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRS 504
             LP++ + T+L+ MY +CG L  +  +FD M  +NVISW ++I + ++NG+   AL +F+ 
Sbjct:   362 LPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQE 421

Query:   505 MQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGF 564
             +  S   PDS  +A +L    +  +L  G+EIH  ++K  + S   +    + MY MCG 
Sbjct:   422 LWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGD 481

Query:   565 LECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI 624
             LE A+  F+ + +K  ++W +II AY  +   + ++ LF +M      PN  TF  LL+ 
Sbjct:   482 LEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAA 541

Query:   625 CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFRE 675
             C+ +G  DE    F  M R Y I+   EHY  M+D++ R G    A RF E
Sbjct:   542 CSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLE 592

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 179/571 (31%), Positives = 309/571 (54%)

Query:   110 FNALITACVRTRSLVEGRLIHTHIRINGLE-NNGFLRTKLVKMYTSCGSFEDAEKVFDES 168
             F +L+  C+R+R+LV G++IH H+    L  ++  +   L ++Y SC   E A  VFDE 
Sbjct:     2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61

Query:   169 SSESVYP--WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL 226
                 + P  W+ ++R    A        L  Y KM   GV+   YT+  V+K+ AG  A+
Sbjct:    62 PHPRINPIAWDLMIRA--YASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAI 119

Query:   227 MQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGF 286
               G   H+ +  + F   + + T+L+D Y KCG++++A +VFDE   RD+V W +MI+GF
Sbjct:   120 DDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179

Query:   287 AHNRLRWEALDCARWMIR-EGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSE 345
             + +    + +     M R +G+ PN   +  + P +G A A + G+ VH Y  +   +S 
Sbjct:   180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMG-FSN 238

Query:   346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQ 405
             +L V++ ++D+Y K + +  A RVF    ++NE+ W+A++ GYV N  +++A      M 
Sbjct:   239 DLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQML 298

Query:   406 QEGFRPDVVTVAT--VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV 463
                    V  VA   ++  C++   L+ G+ +H YAVK  F+ ++++  +++  Y+K G 
Sbjct:   299 VNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGS 358

Query:   464 LDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV 523
             L  + + F E+ +++VIS+ ++I  C+ N R +++  +F  M+ S  RPD   +  +L+ 
Sbjct:   359 LCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTA 418

Query:   524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITW 583
                L AL  G   HG  +   +A    +    + MY  CG L+ AK VFD +  +  ++W
Sbjct:   419 CSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSW 478

Query:   584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR 643
               ++  +G + L +EALSLF+ M+  G  P+  T   +LS C+ +G  DE  ++FN MSR
Sbjct:   479 NTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSR 538

Query:   644 G-YKIEALEEHYLIMIDILTRFGRIEEAHRF 673
             G + +    +HY  M D+L R G ++EA+ F
Sbjct:   539 GDFNVIPRIDHYNCMTDLLARAGYLDEAYDF 569

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 176/561 (31%), Positives = 288/561 (51%)

Query:   121 RSLVEGRLIHTHIRI--NGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNA 178
             RS     L  TH +I  +G  N+  L TKL +  +  G+   A  +F       V+ +N 
Sbjct:    29 RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query:   179 LLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIK 238
             L+RG  +         +F +++ +   ++ N  T++  I + +G      G   H   + 
Sbjct:    89 LMRGFSVNESPHSSLSVFAHLR-KSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147

Query:   239 NGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDC 298
             +G    L+L ++++ MYFK  +++ AR+VFD   ++D ++W +MI+G+  N +  E++  
Sbjct:   148 DGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQV 207

Query:   299 ARWMIREGIYP-NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMY 357
              R +I E     ++  L  +LP + E    +LG ++H+   K   YS + +V +  + +Y
Sbjct:   208 FRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLY 266

Query:   358 CKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA 417
              KC  +     +F E  + + + + A++ GY SNG  E +L     +   G R    T+ 
Sbjct:   267 SKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLV 326

Query:   418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR 477
             +++PV   L  +     IH Y +K+ FL + S+ T+L  +YSK   ++ + KLFDE   +
Sbjct:   327 SLVPVSGHLMLIY---AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEK 383

Query:   478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH 537
             ++ SW AMI    +NG  +DA+ +FR MQ S+  P+ V +  +LS   QL AL LGK +H
Sbjct:   384 SLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVH 443

Query:   538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQ 597
               V   DF S  +V+   I MY  CG +  A+ +FD +  K  +TW  +I  YG +   Q
Sbjct:   444 DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQ 503

Query:   598 EALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIM 657
             EAL++F +M N G TP   TF  +L  C+ AG   E   IFN M   Y  E   +HY  M
Sbjct:   504 EALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACM 563

Query:   658 IDILTRFGRIEEAHRFREMSS 678
             +DIL R G ++ A +F E  S
Sbjct:   564 VDILGRAGHLQRALQFIEAMS 584

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9I3	PP115_ARATH	No assigned EC number	0.6403	0.9383	0.9274	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIX.1843.1 hypothetical protein (633 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	681
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-99
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-67
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-54
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-50
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-45
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-32
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	8e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  324 bits (832), Expect = 1e-99
 Identities = 180/591 (30%), Positives = 307/591 (51%), Gaps = 13/591 (2%)

Query: 87  KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN----GLENNG 142
           +L++AL +L+ M +  +PV+   + AL   C   R++ EG  + +    +    G+    
Sbjct: 66  QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR--- 122

Query: 143 FLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMR 202
            L   ++ M+   G    A  VF +     ++ WN L+ G   AG   +   L  Y +M 
Sbjct: 123 -LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG--YFDEALCLYHRML 179

Query: 203 ELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIK 262
             GV+ +VYTF CV+++  G   L +G + HA +++ GF   + +  +LI MY KCG + 
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239

Query: 263 LARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIG 322
            AR VFD    RD + W +MI+G+  N    E L+    M    + P+ + +T ++    
Sbjct: 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299

Query: 323 EAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWT 382
                +LG+E+H YV+K   ++ ++ V +SL+ MY        A +VF   E ++ + WT
Sbjct: 300 LLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358

Query: 383 ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKN 442
           A++SGY  NG  ++AL + A M+Q+   PD +T+A+V+  C+ L  L+ G ++H  A + 
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418

Query: 443 QFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVF 502
             +  V +  +L+ MYSKC  +D +L++F  +  ++VISWT++I     N R  +AL  F
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478

Query: 503 RSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC 562
           R M L+  +P+SV +   LS   ++ AL  GKEIH  VL+       F+    + +Y  C
Sbjct: 479 RQMLLTL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537

Query: 563 GFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL 622
           G +  A   F++   K  ++W  ++  Y  +     A+ LF++M   G  P+  TF  LL
Sbjct: 538 GRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

Query: 623 SICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF 673
             C+++G   +    F+ M   Y I    +HY  ++D+L R G++ EA+ F
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  235 bits (601), Expect = 6e-67
 Identities = 142/464 (30%), Positives = 225/464 (48%), Gaps = 8/464 (1%)

Query: 168 SSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALM 227
           SSS S +  N+ LR     G+      L     M+EL V ++   +  + +      A+ 
Sbjct: 46  SSSSSTHDSNSQLRALCSHGQLEQALKLLE--SMQELRVPVDEDAYVALFRLCEWKRAVE 103

Query: 228 QGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFA 287
           +G +  +  + +     + L  +++ M+ + G++  A  VF +  +RD+  W  ++ G+A
Sbjct: 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYA 163

Query: 288 HNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEA--WARKLGQEVHAYVLKNERYSE 345
                 EAL     M+  G+ P+      +L   G     AR  G+EVHA+V++   +  
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR--GREVHAHVVRFG-FEL 220

Query: 346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQ 405
           ++ V ++L+ MY KC D+ SA  VF     R+ I W A++SGY  NG   + L     M+
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280

Query: 406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD 465
           +    PD++T+ +VI  C  L     G+E+H Y VK  F  +VS+  SL+ MY   G   
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340

Query: 466 YSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG 525
            + K+F  ME ++ +SWTAMI    +NG  D AL  +  M+     PD + +A +LS   
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400

Query: 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTA 585
            L  L +G ++H    +K   S   VA   I+MY  C  ++ A  VF  +P K  I+WT+
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460

Query: 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG 629
           II     N+ C EAL  F +M      PN  T    LS C + G
Sbjct: 461 IIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIG 503

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  196 bits (499), Expect = 8e-54
 Identities = 88/328 (26%), Positives = 166/328 (50%)

Query: 346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQ 405
           + ++ + ++ M+ KC  +  A R+F E  ERN   W  ++ G V  G   +A      M 
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216

Query: 406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD 465
           ++G   +  T   ++   + L +   G+++H   +K   + +  +  +L+ MYSKCG ++
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276

Query: 466 YSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG 525
            +  +FD M  +  ++W +M+     +G  ++AL ++  M+ S    D    + M+ +  
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336

Query: 526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTA 585
           +L  L+  K+ H  +++  F          + +Y   G +E A+ VFD +P K  I+W A
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396

Query: 586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY 645
           +I  YG +    +A+ +F++M   G  PNH TF  +LS C  +G +++   IF  MS  +
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456

Query: 646 KIEALEEHYLIMIDILTRFGRIEEAHRF 673
           +I+    HY  MI++L R G ++EA+  
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAM 484

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  185 bits (470), Expect = 7e-50
 Identities = 122/540 (22%), Positives = 234/540 (43%), Gaps = 38/540 (7%)

Query: 16  HSFPPNPISNNHQFFKLKASAT----------KPESTYFQKRKKYHTKKSAEKDAFPSSL 65
             F          F  +  S+           KPE    +  +    +    +       
Sbjct: 30  RKFSLRGRRTKTPFSSISCSSVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGV- 88

Query: 66  PLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQG-IPVNVTTFNALITACVRTRSLV 124
                   ++   I++     + +EAL + + ++      +  +T++AL+ AC+  +S+ 
Sbjct: 89  --------SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR 140

Query: 125 EGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAV 184
             + ++ H+  +G E + ++  +++ M+  CG   DA ++FDE    ++  W  ++ G V
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200

Query: 185 IAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDY 244
            AG   YR     + +M E G      TF  ++++ AG  +   G + H  ++K G V  
Sbjct: 201 DAG--NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258

Query: 245 LILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIR 304
             +  +LIDMY KCG I+ AR VFD   ++  V W SM+AG+A +    EAL     M  
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318

Query: 305 EGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMN 364
            G+  +    +I++ +       +  ++ HA +++   +  ++   ++LVD+Y K   M 
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRME 377

Query: 365 SAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCS 424
            A  VF     +N I W AL++GY ++GR  +A+     M  EG  P+ VT   V+  C 
Sbjct: 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437

Query: 425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMI-MYSKCGVLDYSLKLFDEMEVRNVIS-W 482
                  G EI     +N  +   ++  + MI +  + G+LD +  +      +  ++ W
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497

Query: 483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDS-----------VAMARMLSVSGQLKALK 531
            A++ +C  +  L+  LG   + +L    P+             +  R    +  ++ LK
Sbjct: 498 AALLTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  173 bits (439), Expect = 1e-45
 Identities = 113/412 (27%), Positives = 193/412 (46%), Gaps = 8/412 (1%)

Query: 236 LIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEA 295
           +  +GF     +   ++ M+ KCG +  ARR+FDE  +R++  WG++I G        EA
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208

Query: 296 LDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVD 355
               R M  +G         ++L       + + GQ++H  VLK      + FV  +L+D
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV-GDTFVSCALID 267

Query: 356 MYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT 415
           MY KC D+  A  VF    E+  + W ++++GY  +G  E+AL     M+  G   D  T
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327

Query: 416 VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEME 475
            + +I + S+L  L H K+ HA  ++  F  ++   T+L+ +YSK G ++ +  +FD M 
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387

Query: 476 VRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKE 535
            +N+ISW A+I     +GR   A+ +F  M      P+ V    +LS        + G E
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447

Query: 536 IHGQVLKKDFASVPFVA--AENIKMYGMCGFLECAKLVFDAVPVKGSIT-WTAIIEAYGY 592
           I  Q + ++    P     A  I++ G  G L+ A  +    P K ++  W A++ A   
Sbjct: 448 IF-QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI 506

Query: 593 NDLCQEALSLFDKMRNGGFTPNHF-TFKVLLSICNQAGFADEACRIFNVMSR 643
           +   +      +K+   G  P     + VLL++ N +G   EA ++   + R
Sbjct: 507 HKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  133 bits (337), Expect = 1e-32
 Identities = 74/270 (27%), Positives = 141/270 (52%), Gaps = 4/270 (1%)

Query: 409 FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL 468
           F     T   ++  C  LK++   K ++ +   + F P+  ++  +++M+ KCG+L  + 
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178

Query: 469 KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK 528
           +LFDEM  RN+ SW  +I   ++ G   +A  +FR M       +      ML  S  L 
Sbjct: 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238

Query: 529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIE 588
           + + G+++H  VLK       FV+   I MY  CG +E A+ VFD +P K ++ W +++ 
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298

Query: 589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF-NVMSRGYKI 647
            Y  +   +EAL L+ +MR+ G + + FTF +++ I ++    + A +    ++  G+ +
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358

Query: 648 EALEEHYLIMIDILTRFGRIEEA-HRFREM 676
           + +    L  +D+ +++GR+E+A + F  M
Sbjct: 359 DIVANTAL--VDLYSKWGRMEDARNVFDRM 386

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 60.7 bits (147), Expect = 2e-09
 Identities = 59/274 (21%), Positives = 115/274 (41%), Gaps = 53/274 (19%)

Query: 379 ILWTALMSGYVSNGRLEQALRSIAWMQQEG--FRPDVVTVATVIPVCSQLKALNHGKE-- 434
           +++ AL+S    +G +++A   +A M+ E     PD +TV  ++  C+    ++  KE  
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602

Query: 435 --IHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV----ISWTAMIDS 488
             IH Y +K    P V   T  +   S+ G  D++L ++D+M+ + V    + ++A++D 
Sbjct: 603 QMIHEYNIKGT--PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658

Query: 489 CIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL----KALKLGKEIHGQVLKKD 544
               G LD A  + +  +    +  +V+ + ++          KAL+L ++I    L+  
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-- 716

Query: 545 FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFD 604
               P V+  N  +                         TA+ E     +   +AL +  
Sbjct: 717 ----PTVSTMNALI-------------------------TALCEG----NQLPKALEVLS 743

Query: 605 KMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF 638
           +M+  G  PN  T+ +LL    +   AD    + 
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.3 bits (141), Expect = 9e-09
 Identities = 64/295 (21%), Positives = 108/295 (36%), Gaps = 80/295 (27%)

Query: 381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAV 440
           +  LMS   S+  ++ ALR +  +Q+ G + D     T+I  C+                
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---------------- 483

Query: 441 KNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR----NVISWTAMIDSCIENGRLD 496
                              K G +D   ++F EM       NV ++ A+ID C   G++ 
Sbjct: 484 -------------------KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524

Query: 497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKAL--------KLGKEIHGQVLKKDFASV 548
            A G +  M+    +PD V    ++S  GQ  A+        ++  E H   +  D  +V
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP--IDPDHITV 582

Query: 549 PFV------------AAENIKM---YGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYN 593
             +            A E  +M   Y + G  E   +  ++   KG   +          
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF---------- 632

Query: 594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVM-SRGYKI 647
                ALS++D M+  G  P+   F  L+ +   AG  D+A  I      +G K+
Sbjct: 633 -----ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLS 623
              +T+  +I+ Y      +EAL LF++M+  G  PN +T+ +L+ 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.9 bits (110), Expect = 9e-07
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVI 420
           + + +  L+ GY   G++E+AL+    M++ G +P+V T + +I
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 9/38 (23%), Positives = 23/38 (60%)

Query: 478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV 515
           +V+++  +ID   + G++++AL +F  M+    +P+  
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY 39

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 79  IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVR 119
           I  + ++ K++EAL + + M ++GI  NV T++ LI    +
Sbjct: 10  IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS 514
           +++  +ID   + GR+++AL +F+ M+     PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 275 DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILL 318
           D+V + ++I G+       EAL     M + GI PN    +IL+
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGF 611
           +T+ ++I  Y      +EAL LF +M+  G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 7/27 (25%), Positives = 19/27 (70%)

Query: 480 ISWTAMIDSCIENGRLDDALGVFRSMQ 506
           +++ ++I    + G+L++AL +F+ M+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 476 VRNVISWTAMIDSCIENGRLDDALGVFRSMQ 506
             +V+++  +ID     GR+D+A+ +   M+
Sbjct: 4   KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 27/144 (18%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIH 436
           +E+ ++AL+      G L++A   +   +++G +   V+ ++++  CS  K      E++
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707

Query: 437 AYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEME----VRNVISWTAMIDSCIEN 492
                 +  P VS + +L+    +   L  +L++  EM+      N I+++ ++ +    
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767

Query: 493 GRLDDALGVFRSMQLSKHRPDSVA 516
              D  L       LS+ + D + 
Sbjct: 768 DDADVGL-----DLLSQAKEDGIK 786

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN 614
           +T+  +I+        +EAL LF +M+  G  P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 172 SVYPWNALLRGAVIAGKKR--YRGVLFNYMKMRELGVQLNVYTFSCVIKSFA 221
            V  +N L+ G    GK     +  LFN MK R  G++ NVYT+S +I    
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALK--LFNEMKKR--GIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	681
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.85
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.83
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.79
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.78
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.78
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
KOG2076	895	consensus RNA polymerase III transcription factor	99.75
KOG2003	840	consensus TPR repeat-containing protein [General f	99.72
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.72
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.7
KOG2003	840	consensus TPR repeat-containing protein [General f	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.66
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.65
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.57
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.51
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.49
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.47
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.46
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.46
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.39
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.36
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.35
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.32
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.31
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.31
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.3
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.3
PF13041	50	PPR_2: PPR repeat family	99.27
PF13041	50	PPR_2: PPR repeat family	99.24
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.23
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.2
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.19
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.19
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.17
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.16
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.12
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.12
KOG1129	478	consensus TPR repeat-containing protein [General f	99.12
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.11
KOG1129	478	consensus TPR repeat-containing protein [General f	99.09
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.09
PRK12370	553	invasion protein regulator; Provisional	99.07
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.07
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.05
PRK12370	553	invasion protein regulator; Provisional	99.05
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.98
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.96
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.92
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.9
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.89
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.88
PRK11189	296	lipoprotein NlpI; Provisional	98.83
PRK11189	296	lipoprotein NlpI; Provisional	98.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.75
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.69
PRK04841	903	transcriptional regulator MalT; Provisional	98.65
PRK04841	903	transcriptional regulator MalT; Provisional	98.65
PF12854	34	PPR_1: PPR repeat	98.64
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.6
PF12854	34	PPR_1: PPR repeat	98.59
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.57
KOG1125	579	consensus TPR repeat-containing protein [General f	98.54
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.4
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.35
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.34
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.33
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.33
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.32
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.3
PRK15359	144	type III secretion system chaperone protein SscB;	98.28
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.25
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.25
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.24
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.24
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.24
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.18
PLN02789	320	farnesyltranstransferase	98.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.17
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.17
PRK15359	144	type III secretion system chaperone protein SscB;	98.17
PLN02789	320	farnesyltranstransferase	98.16
KOG1125	579	consensus TPR repeat-containing protein [General f	98.13
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.12
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.11
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.11
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.09
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.07
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.06
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.04
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.03
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.01
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.01
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.0
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.96
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.96
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.95
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.87
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.86
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.85
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.8
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.79
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.77
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.75
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.75
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.69
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.68
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.64
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.63
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.6
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.59
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.56
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.54
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.52
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.5
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.47
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.45
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.43
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.42
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.41
PF12688	120	TPR_5: Tetratrico peptide repeat	97.41
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.4
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.38
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.34
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.3
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.28
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.26
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.23
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.22
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.17
PRK10803	263	tol-pal system protein YbgF; Provisional	97.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.15
KOG0553	304	consensus TPR repeat-containing protein [General f	97.11
PF12688	120	TPR_5: Tetratrico peptide repeat	97.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.08
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.07
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.94
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.92
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.85
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.85
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.84
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.8
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.78
KOG0553	304	consensus TPR repeat-containing protein [General f	96.77
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.73
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.64
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.6
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.57
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.52
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.51
PF13371	73	TPR_9: Tetratricopeptide repeat	96.47
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.46
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.35
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.34
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.3
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.3
KOG3941	406	consensus Intermediate in Toll signal transduction	96.27
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.25
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.17
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.15
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.15
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.1
PRK10803	263	tol-pal system protein YbgF; Provisional	96.1
KOG3941	406	consensus Intermediate in Toll signal transduction	95.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.82
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.82
PF13371	73	TPR_9: Tetratricopeptide repeat	95.76
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.52
PRK11906	458	transcriptional regulator; Provisional	95.43
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.3
PRK15331	165	chaperone protein SicA; Provisional	95.26
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.11
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.96
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.58
KOG4555	175	consensus TPR repeat-containing protein [Function	94.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.56
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	94.54
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.49
PRK15331	165	chaperone protein SicA; Provisional	94.46
PF13512	142	TPR_18: Tetratricopeptide repeat	94.44
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.34
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.24
PRK11906	458	transcriptional regulator; Provisional	93.94
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.7
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.67
PRK09687	280	putative lyase; Provisional	93.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.52
PF13428	44	TPR_14: Tetratricopeptide repeat	93.47
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.39
KOG4555	175	consensus TPR repeat-containing protein [Function	93.34
PRK11619	644	lytic murein transglycosylase; Provisional	93.33
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.24
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.02
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.93
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.75
PF13512	142	TPR_18: Tetratricopeptide repeat	92.41
PF13428	44	TPR_14: Tetratricopeptide repeat	92.4
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.25
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.14
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	91.82
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.74
KOG1585	308	consensus Protein required for fusion of vesicles	91.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.67
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	91.63
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.53
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.48
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.35
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	91.29
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.1
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.07
PRK09687	280	putative lyase; Provisional	90.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.77
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.58
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.52
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.23
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	89.86
COG0457	291	NrfG FOG: TPR repeat [General function prediction	89.79
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.69
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.46
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	88.99
PF13431	34	TPR_17: Tetratricopeptide repeat	88.73
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.71
KOG1585	308	consensus Protein required for fusion of vesicles	88.57
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.51
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	88.12
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.96
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	87.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.41
PF13929	292	mRNA_stabil: mRNA stabilisation	87.03
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.69
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.59
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.52
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.49
PF13431	34	TPR_17: Tetratricopeptide repeat	86.43
KOG2062	929	consensus 26S proteasome regulatory complex, subun	85.78
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.05
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	84.94
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	84.91
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	84.85
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.36
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.65
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.6
KOG4570	418	consensus Uncharacterized conserved protein [Funct	83.59
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	83.36
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.8
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	82.6
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.49
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	82.1
KOG1586	288	consensus Protein required for fusion of vesicles	81.96
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.74
PRK11619	644	lytic murein transglycosylase; Provisional	81.6
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	81.24
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	80.88
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	80.8
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	80.54
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	80.3

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.1e-90  Score=758.64  Aligned_cols=608  Identities=29%  Similarity=0.520  Sum_probs=597.2

Q ss_pred             CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571           67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT  146 (681)
Q Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  146 (681)
                      ..++++..++.++..+++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+....+.+++..+.+.+..++..++|
T Consensus        46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n  125 (857)
T PLN03077         46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN  125 (857)
T ss_pred             hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence            33556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCch
Q 047571          147 KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL  226 (681)
Q Consensus       147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  226 (681)
                      .++..|++.|+++.|.++|++|+++|..+||.+|.+|++.|  ++++|+.+|++|...|+.||..||+.++++|+..+++
T Consensus       126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g--~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~  203 (857)
T PLN03077        126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG--YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL  203 (857)
T ss_pred             HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence            99999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047571          227 MQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREG  306 (681)
Q Consensus       227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  306 (681)
                      ..+.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|..+|.++||++|.+|++.|++++|+++|++|.+.|
T Consensus       204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g  283 (857)
T PLN03077        204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS  283 (857)
T ss_pred             hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH
Q 047571          307 IYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMS  386 (681)
Q Consensus       307 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~  386 (681)
                      +.||..||+.++.+|++.|+.+.+.+++..+.+. |+.||..+|++++.+|++.|++++|.++|++|..+|..+||++|.
T Consensus       284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~  362 (857)
T PLN03077        284 VDPDLMTITSVISACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS  362 (857)
T ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047571          387 GYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDY  466 (681)
Q Consensus       387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  466 (681)
                      +|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++
T Consensus       363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~  442 (857)
T PLN03077        363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK  442 (857)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 047571          467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA  546 (681)
Q Consensus       467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  546 (681)
                      |.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+.|+.
T Consensus       443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~  521 (857)
T PLN03077        443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG  521 (857)
T ss_pred             HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999986 59999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      ++..+++.++.+|+++|++++|.++|+.+ .+|..+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.
T Consensus       522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  600 (857)
T PLN03077        522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS  600 (857)
T ss_pred             ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence            99999999999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      +.|++++|.++|+.|.+..++.|+..+|++|+++|++.|++++|.+++++||.
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~  653 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI  653 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            99999999999999997679999999999999999999999999999999974

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-81  Score=691.92  Aligned_cols=575  Identities=24%  Similarity=0.392  Sum_probs=559.4

Q ss_pred             CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571           69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL  148 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  148 (681)
                      +++..+|+.++.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+|+.|
T Consensus       149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L  228 (857)
T PLN03077        149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL  228 (857)
T ss_pred             CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhh
Q 047571          149 VKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQ  228 (681)
Q Consensus       149 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  228 (681)
                      +.+|+++|++++|.++|++|+++|..+||++|.+|++.|  ++++|+++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus       229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g--~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~  306 (857)
T PLN03077        229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG--ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL  306 (857)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence            999999999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047571          229 GLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIY  308 (681)
Q Consensus       229 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  308 (681)
                      +.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus       307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~  386 (857)
T PLN03077        307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS  386 (857)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 047571          309 PNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGY  388 (681)
Q Consensus       309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  388 (681)
                      ||..||+.++.+|++.|+.+.+.++++.+.+. |+.++..++++|+++|++.|++++|.++|++|.++|+.+|+.+|.+|
T Consensus       387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~  465 (857)
T PLN03077        387 PDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL  465 (857)
T ss_pred             CCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571          389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  468 (681)
                      ++.|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++++|+++|++.|++++|.
T Consensus       466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~  544 (857)
T PLN03077        466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW  544 (857)
T ss_pred             HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence            999999999999999986 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH-HcCCCC
Q 047571          469 KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL-KKDFAS  547 (681)
Q Consensus       469 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~  547 (681)
                      ++|+++ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|
T Consensus       545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P  623 (857)
T PLN03077        545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP  623 (857)
T ss_pred             HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence            999999 999999999999999999999999999999999999999999999999999999999999999999 689999


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 047571          548 VPFVAAENIKMYGMCGFLECAKLVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSIC  625 (681)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~  625 (681)
                      +..+|+.++.+|++.|++++|.+++++|.. ||..+|++|+.+|..+|+.+.+....+++.+.  .| +...|..|.+.|
T Consensus       624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~y  701 (857)
T PLN03077        624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLY  701 (857)
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHH
Confidence            999999999999999999999999999964 99999999999999999999999999999884  55 677888889999


Q ss_pred             hccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571          626 NQAGFADEACRIFNVMSRGYKIEALE  651 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~~~~~~~~  651 (681)
                      +..|+|++|.++.+.|++. |+.+++
T Consensus       702 a~~g~~~~a~~vr~~M~~~-g~~k~~  726 (857)
T PLN03077        702 ADAGKWDEVARVRKTMREN-GLTVDP  726 (857)
T ss_pred             HHCCChHHHHHHHHHHHHc-CCCCCC
Confidence            9999999999999999886 776654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.6e-69  Score=578.00  Aligned_cols=530  Identities=16%  Similarity=0.166  Sum_probs=441.0

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHH
Q 047571          104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL-ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRG  182 (681)
Q Consensus       104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~  182 (681)
                      .++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|++.|.+++|.++|+.|..|+..+|+.+|.+
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a  446 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV  446 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            55778888999999999999999999999998885 56777888899999999999999999998888888888888888


Q ss_pred             HHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChH
Q 047571          183 AVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIK  262 (681)
Q Consensus       183 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~  262 (681)
                      |++.|  +++.|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus       447 ~~k~g--~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e  524 (1060)
T PLN03218        447 CASSQ--DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA  524 (1060)
T ss_pred             HHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence            88888  8888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhccCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhh
Q 047571          263 LARRVFDETGD----RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVL  338 (681)
Q Consensus       263 ~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  338 (681)
                      +|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|++|...+                                
T Consensus       525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~--------------------------------  572 (1060)
T PLN03218        525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--------------------------------  572 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc--------------------------------
Confidence            88887777643    566677777777777777777777777765421                                


Q ss_pred             hccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH
Q 047571          339 KNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER----NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV  414 (681)
Q Consensus       339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  414 (681)
                        .++.||..+|++++.+|++.|++++|.++|+.|.+.    +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus       573 --~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~  650 (1060)
T PLN03218        573 --HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV  650 (1060)
T ss_pred             --CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence              134455555566666677777777777777777653    55788888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHH
Q 047571          415 TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEME----VRNVISWTAMIDSCI  490 (681)
Q Consensus       415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~  490 (681)
                      +|+.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.    .||..+|+.||.+|+
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~  730 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC  730 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999985    489999999999999


Q ss_pred             hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047571          491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL  570 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  570 (681)
                      +.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++++|.+.|+.|+..+|+.++.+|.  ++++++..
T Consensus       731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~  808 (1060)
T PLN03218        731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACA  808 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999987643  24555554


Q ss_pred             HhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          571 VFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       571 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                      +.+.+..     |+. .......+..++|+.+|++|.+.|+.||..||..++.++++.+..+.+..+++.|... +..|+
T Consensus       809 l~~~v~~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~  881 (1060)
T PLN03218        809 LGEPVVS-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQK  881 (1060)
T ss_pred             hhhhhhh-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcc
Confidence            4332221     110 1111122345679999999999999999999999998888889999999999988765 78888


Q ss_pred             hhHHHHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571          651 EEHYLIMIDILTRFGRIEEAHRFREMSSSL  680 (681)
Q Consensus       651 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  680 (681)
                      ..+|++||+++++.  .++|..++++|..+
T Consensus       882 ~~~y~~Li~g~~~~--~~~A~~l~~em~~~  909 (1060)
T PLN03218        882 QSNLSTLVDGFGEY--DPRAFSLLEEAASL  909 (1060)
T ss_pred             hhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence            99999999998432  46899999998654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.3e-68  Score=572.43  Aligned_cols=474  Identities=24%  Similarity=0.417  Sum_probs=457.5

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG-IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV  149 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  149 (681)
                      +...|+.++..+.+.|++++|+++|++|...+ +.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            34589999999999999999999999998764 78999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhh
Q 047571          150 KMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQG  229 (681)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  229 (681)
                      .+|++.|++++|.++|++|++||..+||.++.+|++.|  ++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g--~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG--NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc--CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571          230 LKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP  309 (681)
Q Consensus       230 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  309 (681)
                      .+++..+.+.|+.||..+|+.||++|++.|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 047571          310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYV  389 (681)
Q Consensus       310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~  389 (681)
                      |..||+.++.+|++.|.++.|.+++..+.+. |+.+|..++++|+++|++.|++++|.++|++|.++|+.+||++|.+|+
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571          390 SNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK-NQFLPNVSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       390 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~  468 (681)
                      +.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 699999999999999999999999999


Q ss_pred             HHHhhCC-CCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 047571          469 KLFDEME-VRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA  546 (681)
Q Consensus       469 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  546 (681)
                      +++++|. .|+..+|++|+.+|...|+++.|..+++++.+  +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~  560 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS  560 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence            9999997 48999999999999999999999999999975  4554 568999999999999999999999999998876


Q ss_pred             CCh
Q 047571          547 SVP  549 (681)
Q Consensus       547 ~~~  549 (681)
                      ..+
T Consensus       561 k~~  563 (697)
T PLN03081        561 MHP  563 (697)
T ss_pred             cCC
Confidence            443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-67  Score=567.18  Aligned_cols=471  Identities=25%  Similarity=0.372  Sum_probs=449.4

Q ss_pred             CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcC-CCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhH
Q 047571          172 SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELG-VQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTS  250 (681)
Q Consensus       172 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  250 (681)
                      +..+|+.+|.++.+.|  ++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus        86 ~~~~~~~~i~~l~~~g--~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         86 SGVSLCSQIEKLVACG--RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CceeHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4445666666666666  6667777777787754 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhccc
Q 047571          251 LIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLG  330 (681)
Q Consensus       251 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  330 (681)
                      ++.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcC
Q 047571          331 QEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFR  410 (681)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  410 (681)
                      .+++..+.+. |+.+|..++++|+++|++.|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus       244 ~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        244 QQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            9999999998 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047571          411 PDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCI  490 (681)
Q Consensus       411 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~  490 (681)
                      ||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047571          491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK-KDFASVPFVAAENIKMYGMCGFLECAK  569 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~  569 (681)
                      +.|+.++|+++|++|.+.|+.||..||..++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 699999999999999999999999999


Q ss_pred             HHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 047571          570 LVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI  647 (681)
Q Consensus       570 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  647 (681)
                      ++++++.. |+..+|++|+.+|..+|+++.|..+++++.+  +.| +..+|..|++.|++.|++++|.++++.|++. |+
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~  559 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GL  559 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence            99999976 8999999999999999999999999999986  455 5789999999999999999999999999886 65


Q ss_pred             C
Q 047571          648 E  648 (681)
Q Consensus       648 ~  648 (681)
                      .
T Consensus       560 ~  560 (697)
T PLN03081        560 S  560 (697)
T ss_pred             c
Confidence            4

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-66  Score=559.95  Aligned_cols=529  Identities=15%  Similarity=0.196  Sum_probs=442.1

Q ss_pred             CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH
Q 047571           67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGI-PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR  145 (681)
Q Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  145 (681)
                      ...++...|..++..+++.|++++|+++|++|.+.|+ +++..+++.++..|.+.|.+.+|..+++.|..    |+..+|
T Consensus       365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty  440 (1060)
T PLN03218        365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF  440 (1060)
T ss_pred             CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence            3445677899999999999999999999999999985 67888899999999999999999999999973    999999


Q ss_pred             HHHHHHhhcCCChhHHHHhhhhcC----CCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 047571          146 TKLVKMYTSCGSFEDAEKVFDESS----SESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFA  221 (681)
Q Consensus       146 ~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  221 (681)
                      +.++.+|++.|+++.|.++|++|.    .||..+|+.+|.+|++.|  +++.|.++|++|.+.|+.||..||+.+|.+|+
T Consensus       441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~  518 (1060)
T PLN03218        441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--KVDAMFEVFHEMVNAGVEANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999997    477888999999999999  99999999999999999999999999999999


Q ss_pred             ccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccC------CCChhhHHHHHHHHHhcCChHHH
Q 047571          222 GASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETG------DRDIVVWGSMIAGFAHNRLRWEA  295 (681)
Q Consensus       222 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a  295 (681)
                      +.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.      .||..+|+++|.+|++.|++++|
T Consensus       519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA  598 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA  598 (1060)
T ss_pred             HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999999999999985      47999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 047571          296 LDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE  375 (681)
Q Consensus       296 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  375 (681)
                      .++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.++++|++.|++++|.++|++|.+
T Consensus       599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k  677 (1060)
T PLN03218        599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK  677 (1060)
T ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999999999999888888888888888888888877 7888888888888777777777777777777764


Q ss_pred             ----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH
Q 047571          376 ----RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII  451 (681)
Q Consensus       376 ----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  451 (681)
                          +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|
T Consensus       678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty  757 (1060)
T PLN03218        678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY  757 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence                4667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571          452 TSLMIMYSKCGVLDYSLKLFDEMEV----RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL  527 (681)
Q Consensus       452 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  527 (681)
                      +.++.+|++.|++++|.+++++|.+    ||..+|+.++..|.  +++++|..+.+.+..-.  +        .......
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n  825 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIEN  825 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------ccccccc
Confidence            7777777777777777777777653    66677777765443  23444444433332210  0        0011112


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CChhhHHHHHHHHHcCCChHHHHHHH
Q 047571          528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KGSITWTAIIEAYGYNDLCQEALSLF  603 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~  603 (681)
                      +..+.|..+|++|.+.|+.|+..+|..++.++++.+..+.+..+++.+..    ++..+|+++|.++.+.  .++|..++
T Consensus       826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~  903 (1060)
T PLN03218        826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLL  903 (1060)
T ss_pred             chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence            23467889999999999999999999999888888888999988887754    6678999999988432  46899999


Q ss_pred             HHHHhCCCCCCHH
Q 047571          604 DKMRNGGFTPNHF  616 (681)
Q Consensus       604 ~~m~~~g~~p~~~  616 (681)
                      ++|...|+.|+..
T Consensus       904 ~em~~~Gi~p~~~  916 (1060)
T PLN03218        904 EEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHcCCCCCcc
Confidence            9999999999865

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.5e-35  Score=331.46  Aligned_cols=594  Identities=12%  Similarity=0.038  Sum_probs=490.7

Q ss_pred             CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571           67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT  146 (681)
Q Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  146 (681)
                      ..+.+...+..+...+...|++++|...|+.+.+.. +.+...+..+...+.+.|++++|...++.+.... +.+...+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  367 (899)
T TIGR02917       290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALS  367 (899)
T ss_pred             hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence            334444455566667778888888888888887653 4456677778888888888999988888887665 55677888


Q ss_pred             HHHHHhhcCCChhHHHHhhhhcCCC---CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhcc
Q 047571          147 KLVKMYTSCGSFEDAEKVFDESSSE---SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGA  223 (681)
Q Consensus       147 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  223 (681)
                      .+...+.+.|++++|.+.|+++.+.   +...+..+...+...|  ++++|+..++++.+.... +......++..+.+.
T Consensus       368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~  444 (899)
T TIGR02917       368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG--DPSEAIADLETAAQLDPE-LGRADLLLILSYLRS  444 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--ChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhc
Confidence            8888888899999999998876532   2334666667777777  889999998888765422 233455677788889


Q ss_pred             CchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047571          224 SALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCAR  300 (681)
Q Consensus       224 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~  300 (681)
                      |++++|.++++.+.+. .+.+..++..+...+...|++++|.+.|+++.+   .+...+..+...+...|++++|.+.++
T Consensus       445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  523 (899)
T TIGR02917       445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE  523 (899)
T ss_pred             CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999888764 355678888899999999999999999987654   356678888889999999999999999


Q ss_pred             HHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CC
Q 047571          301 WMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RN  377 (681)
Q Consensus       301 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~  377 (681)
                      ++.+.+ +.+..++..+...+...|+.+.+...+..+.+.  .+.+...+..++..+.+.|++++|..+++.+..   .+
T Consensus       524 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  600 (899)
T TIGR02917       524 KVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS  600 (899)
T ss_pred             HHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            998764 335677888888888999999999999988776  455667778899999999999999999988864   36


Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      ...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+...
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  678 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL  678 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            7789999999999999999999999998763 3356677888888999999999999999988764 5567888999999


Q ss_pred             HHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571          458 YSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK  534 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  534 (681)
                      +...|++++|.++++.+.+   .+...+..+...+...|++++|.+.|+++...+  |+..++..+..++...|++++|.
T Consensus       679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999875   355678888899999999999999999998864  55577888899999999999999


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047571          535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF  611 (681)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~  611 (681)
                      ..++.+.+.. +.++..+..+...|...|++++|...|+++..   ++...++.+...+...|+ .+|+..++++.+.. 
T Consensus       757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-  833 (899)
T TIGR02917       757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-  833 (899)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-
Confidence            9999998864 44688899999999999999999999998876   457789999999999999 88999999999853 


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          612 TPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       612 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +-+..++..+..++...|++++|.++++++.+. +. .+..++..++.+|.+.|+.++|++++++|.
T Consensus       834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-AP-EAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            446778889999999999999999999999875 33 267899999999999999999999999985

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.3e-33  Score=318.16  Aligned_cols=601  Identities=12%  Similarity=0.007  Sum_probs=422.6

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH------------------------------
Q 047571           61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTF------------------------------  110 (681)
Q Consensus        61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------------  110 (681)
                      +...+...|.++..+..++..+...|++++|...++.+.+.. +.+...+                              
T Consensus       216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~  294 (899)
T TIGR02917       216 YRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY  294 (899)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            333444445555566666666666666666666666655442 1122222                              


Q ss_pred             ----HHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCC---CCccHHHHHHHH
Q 047571          111 ----NALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE---SVYPWNALLRGA  183 (681)
Q Consensus       111 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~  183 (681)
                          ..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++.+...   +...+..+...+
T Consensus       295 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  373 (899)
T TIGR02917       295 LPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY  373 (899)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence                222333344445555555555444433 333444555555566666666666666554422   222355555556


Q ss_pred             HHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHH
Q 047571          184 VIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKL  263 (681)
Q Consensus       184 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  263 (681)
                      ...|  ++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... ........++..+.+.|++++
T Consensus       374 ~~~g--~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~  449 (899)
T TIGR02917       374 LALG--DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDK  449 (899)
T ss_pred             HHCC--CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHH
Confidence            6666  6666666666655442 12333455555556666666666666666655432 123344455666777777777


Q ss_pred             HHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhc
Q 047571          264 ARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKN  340 (681)
Q Consensus       264 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  340 (681)
                      |.++++.+..   .+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.
T Consensus       450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  528 (899)
T TIGR02917       450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI  528 (899)
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            7777766653   255677777888888888888888888777643 223445666677777778888888888877765


Q ss_pred             cCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHH
Q 047571          341 ERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA  417 (681)
Q Consensus       341 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  417 (681)
                        .+.+...+..+...+.+.|+.++|..++.++...   +...+..++..+...|++++|..+++.+.+.. +.+...|.
T Consensus       529 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  605 (899)
T TIGR02917       529 --DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL  605 (899)
T ss_pred             --CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence              3456677778888888888888888888776542   45567778888888888888888888887653 45667788


Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCC
Q 047571          418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGR  494 (681)
Q Consensus       418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  494 (681)
                      .+..++...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...++++.+   .+..++..++..+...|+
T Consensus       606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  684 (899)
T TIGR02917       606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR  684 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence            88888888899999999888888764 44666778888888889999999998888765   345678888888889999


Q ss_pred             hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhh
Q 047571          495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDA  574 (681)
Q Consensus       495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  574 (681)
                      +++|.++++.+.+.+ +.+...+..+...+...|++++|...+..+.+.+  |+...+..++.++.+.|++++|...+++
T Consensus       685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~  761 (899)
T TIGR02917       685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA  761 (899)
T ss_pred             HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999888775 4566677788888889999999999999888764  4446777888899999999999998888


Q ss_pred             CCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571          575 VPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALE  651 (681)
Q Consensus       575 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  651 (681)
                      +..   .+...+..+...|...|++++|.+.|+++.+.+ +++...+..+...+...|+ ++|+++++++.+..  +-+.
T Consensus       762 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~  837 (899)
T TIGR02917       762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIP  837 (899)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCc
Confidence            766   346778888889999999999999999998864 5678889999999999999 88999999887642  1235


Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          652 EHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       652 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      ..+..++.++...|++++|.++++++..
T Consensus       838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~  865 (899)
T TIGR02917       838 AILDTLGWLLVEKGEADRALPLLRKAVN  865 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6788889999999999999999988764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=6.9e-26  Score=256.00  Aligned_cols=604  Identities=11%  Similarity=-0.029  Sum_probs=429.9

Q ss_pred             cCCCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH----------------HHHHHHHHhcCC
Q 047571           59 DAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTF----------------NALITACVRTRS  122 (681)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~  122 (681)
                      ..+...+...|.++.++..++..+.+.|+.++|.+.++++.+.. |.+....                ..+.+.+...|+
T Consensus        49 ~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~  127 (1157)
T PRK11447         49 QSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR  127 (1157)
T ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence            44666777788899999999999999999999999999998875 2233221                333446788899


Q ss_pred             hhHHHHHHHHHHHhCCCCchh-HHHHHHHHhhcCCChhHHHHhhhhcCCCC---CccHHHHHHHHHHcCCcChhhHHHHH
Q 047571          123 LVEGRLIHTHIRINGLENNGF-LRTKLVKMYTSCGSFEDAEKVFDESSSES---VYPWNALLRGAVIAGKKRYRGVLFNY  198 (681)
Q Consensus       123 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~a~~~~  198 (681)
                      +++|...|+.+...+ +++.. ............|+.++|++.++++...+   ...+..+...+...|  +.++|+..+
T Consensus       128 ~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g--~~~eAl~~l  204 (1157)
T PRK11447        128 TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG--RRDEGFAVL  204 (1157)
T ss_pred             HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC--CHHHHHHHH
Confidence            999999999998765 33432 22222222334689999999999887432   234666677777777  999999999


Q ss_pred             HHHHHcCCC----------------CCh---hhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571          199 MKMRELGVQ----------------LNV---YTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG  259 (681)
Q Consensus       199 ~~m~~~g~~----------------p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  259 (681)
                      +++.+....                ++.   ..+...+..+-.......|...+..+.+....|+... ......+...|
T Consensus       205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g  283 (1157)
T PRK11447        205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG  283 (1157)
T ss_pred             HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence            988653210                000   0112222222222334455555555444333333221 23356677899


Q ss_pred             ChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhH------------HHHHHHHhh
Q 047571          260 KIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVL------------TILLPVIGE  323 (681)
Q Consensus       260 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~------------~~ll~~~~~  323 (681)
                      ++++|+..|++...   .+...+..+...+.+.|++++|+..|++..+...... ...+            ......+..
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~  363 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK  363 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99999999988754   3677889999999999999999999999887542221 1111            112345667


Q ss_pred             hhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHH
Q 047571          324 AWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRS  400 (681)
Q Consensus       324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~  400 (681)
                      .|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.|++..+.   +...+..+...+. .++.++|+.+
T Consensus       364 ~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~  440 (1157)
T PRK11447        364 ANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAF  440 (1157)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHH
Confidence            88999999999999887  4456667788899999999999999999987753   4556666666664 4578999888


Q ss_pred             HHHHHHcCcC--------CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 047571          401 IAWMQQEGFR--------PDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFD  472 (681)
Q Consensus       401 ~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  472 (681)
                      ++.+......        .....+..+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|...++
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8765432100        011234455667788999999999999988865 3456677788899999999999999999


Q ss_pred             hCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH---------HHHHHHHHhccccchHHHHHHHHHH
Q 047571          473 EMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV---------AMARMLSVSGQLKALKLGKEIHGQV  540 (681)
Q Consensus       473 ~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~~a~~~~~~~  540 (681)
                      ++.+  | +...+..+...+...++.++|+..++.+......++..         .+......+...|+.++|..+++. 
T Consensus       520 ~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-  598 (1157)
T PRK11447        520 RLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-  598 (1157)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence            8754  3 33444445555677899999999998875433222221         123445667788999999988872 


Q ss_pred             HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH
Q 047571          541 LKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT  617 (681)
Q Consensus       541 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  617 (681)
                          .+.++..+..+...|.+.|++++|...|+++..  | +...+..++..|...|++++|++.+++..+.. +.+...
T Consensus       599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~  673 (1157)
T PRK11447        599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNT  673 (1157)
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHH
Confidence                345677788899999999999999999998876  4 47788889999999999999999999888742 335677


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEA----LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +..+..++...|++++|.++++.+.....-.|    +...+..+.+++.+.|+.++|++.+++.
T Consensus       674 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A  737 (1157)
T PRK11447        674 QRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA  737 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77888889999999999999998876422222    2245666788899999999999998765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=2.3e-23  Score=235.58  Aligned_cols=594  Identities=10%  Similarity=-0.022  Sum_probs=428.4

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH------
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR------  145 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------  145 (681)
                      ...+...++.+...++.+.|.+.++++.... +-++..+..++..+.+.|+.++|.+.++++.+.. +.+....      
T Consensus        28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~  105 (1157)
T PRK11447         28 QQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTM  105 (1157)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHH
Confidence            3446677888999999999999999998764 4478889999999999999999999999999886 3333322      


Q ss_pred             ----------HHHHHHhhcCCChhHHHHhhhhcCCCCCccHHH---HHHHH-HHcCCcChhhHHHHHHHHHHcCCCCChh
Q 047571          146 ----------TKLVKMYTSCGSFEDAEKVFDESSSESVYPWNA---LLRGA-VIAGKKRYRGVLFNYMKMRELGVQLNVY  211 (681)
Q Consensus       146 ----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---ll~~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~  211 (681)
                                ..+...+...|++++|++.|+.+.+.++.....   +.... ...+  +.++|+..++++.+.. +-+..
T Consensus       106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g--~~~~A~~~L~~ll~~~-P~~~~  182 (1157)
T PRK11447        106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPA--QRPEAINQLQRLNADY-PGNTG  182 (1157)
T ss_pred             HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCc--cHHHHHHHHHHHHHhC-CCCHH
Confidence                      333456888999999999999887543333221   11111 1235  8999999999998863 23455


Q ss_pred             hHHHHHHHhhccCchhhhHHHHHHHHHhCCCC----------------CcH---HHhHHHHHHHhcCChHHHHHHHhccC
Q 047571          212 TFSCVIKSFAGASALMQGLKTHALLIKNGFVD----------------YLI---LRTSLIDMYFKCGKIKLARRVFDETG  272 (681)
Q Consensus       212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~----------------~~~---~~~~li~~~~~~~~~~~a~~~~~~~~  272 (681)
                      .+..+...+...|+.++|.+.++++.+.....                +..   .+...+..+-.....+.|...+....
T Consensus       183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~  262 (1157)
T PRK11447        183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ  262 (1157)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            67778888899999999999999986532110                000   11111111111222344555554322


Q ss_pred             C--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchH
Q 047571          273 D--RDIV-VWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFV  349 (681)
Q Consensus       273 ~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  349 (681)
                      .  .|.. ........+...|++++|+..|++..+.. +-+...+..+..++.+.|+.++|...++...+.....+....
T Consensus       263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~  341 (1157)
T PRK11447        263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK  341 (1157)
T ss_pred             HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence            1  1111 11234566788999999999999998753 225677888889999999999999999998876322222221


Q ss_pred             H------------hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH
Q 047571          350 R------------SSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV  414 (681)
Q Consensus       350 ~------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  414 (681)
                      +            ......+.+.|++++|...|+++.+.   +...+..+...+...|++++|++.|++..+.. +.+..
T Consensus       342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~  420 (1157)
T PRK11447        342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN  420 (1157)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            2            12345677899999999999988753   56678888999999999999999999998753 22344


Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHhCC--------CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHH
Q 047571          415 TVATVIPVCSQLKALNHGKEIHAYAVKNQF--------LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWT  483 (681)
Q Consensus       415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~  483 (681)
                      .+..+...+. .++.++|..+++.+.....        ......+..+...+...|++++|.+.|++..+  | +...+.
T Consensus       421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~  499 (1157)
T PRK11447        421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY  499 (1157)
T ss_pred             HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5555555553 4678899888876433210        01123455677788899999999999999875  4 445677


Q ss_pred             HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh---------hHHHH
Q 047571          484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP---------FVAAE  554 (681)
Q Consensus       484 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~  554 (681)
                      .+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......+..         ..+..
T Consensus       500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~  578 (1157)
T PRK11447        500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE  578 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence            88889999999999999999998753 223334434444566788999999988876543322221         12234


Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      +...+...|+.++|..+++.-+ .+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|
T Consensus       579 ~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA  656 (1157)
T PRK11447        579 TANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA  656 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            5677889999999999998422 345567788899999999999999999999863 44788999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          635 CRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       635 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      ++.++.+.+.   .|+ ...+..+..++.+.|+.++|.++++++..
T Consensus       657 ~~~l~~ll~~---~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        657 RAQLAKLPAT---ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHHhcc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999977653   443 56677889999999999999999998743

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=1.1e-21  Score=211.34  Aligned_cols=570  Identities=10%  Similarity=-0.041  Sum_probs=352.2

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHH
Q 047571           83 ARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAE  162 (681)
Q Consensus        83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  162 (681)
                      ...|++++|+..|++..+.. |-+..++..+...|...|+.++|...+++..+.. +.|...+..+.. +   ++.++|.
T Consensus        55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~-i---~~~~kA~  128 (987)
T PRK09782         55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAA-I---PVEVKSV  128 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHH-h---ccChhHH
Confidence            33489999999999998875 3467888889999999999999999999998775 344555544422 2   8888999


Q ss_pred             HhhhhcCC--CCCc-cHHHHHHHH-----HHcCCcChhhHHHHHHHHHHcCCCCChhhHHHH-HHHhhccCchhhhHHHH
Q 047571          163 KVFDESSS--ESVY-PWNALLRGA-----VIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCV-IKSFAGASALMQGLKTH  233 (681)
Q Consensus       163 ~~~~~~~~--~~~~-~~~~ll~~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~  233 (681)
                      ++++++..  |+.. .+..+....     ....  ..+++...++ .......|+..+.... .+.|...|++++|++++
T Consensus       129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~--q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL  205 (987)
T PRK09782        129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLA--QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY  205 (987)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHhhccchhhhh--hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            99988863  3322 233332220     1122  4466666665 4444444455545555 88889999999999999


Q ss_pred             HHHHHhCCCCCcHHHhHHHHHHHh-cCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh
Q 047571          234 ALLIKNGFVDYLILRTSLIDMYFK-CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIY-PNS  311 (681)
Q Consensus       234 ~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~  311 (681)
                      ..+.+.+. .+......|..+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|..+++++...-.. |+.
T Consensus       206 ~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~  283 (987)
T PRK09782        206 NEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE  283 (987)
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence            99998873 344556667677777 466 88888877655568888999999999999999999999887654322 555


Q ss_pred             hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCC-chHHhHHHHHHHhcCCHHHHHHHH--------------------
Q 047571          312 VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEE-LFVRSSLVDMYCKCRDMNSAWRVF--------------------  370 (681)
Q Consensus       312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~--------------------  370 (681)
                      .++..++.-.....  ..+..-+..     ...++ ......++..+.+.++++.+.++.                    
T Consensus       284 ~~~~~~l~r~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  356 (987)
T PRK09782        284 KSWLYLLSKYSANP--VQALANYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR  356 (987)
T ss_pred             HHHHHHHHhccCch--hhhccchhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence            44444332222111  000000000     00000 001112234444444444443332                    


Q ss_pred             ---------hhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-C-cCCCHHHHHHHHHHhhccCC---hhHHH
Q 047571          371 ---------YETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQE-G-FRPDVVTVATVIPVCSQLKA---LNHGK  433 (681)
Q Consensus       371 ---------~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~---~~~a~  433 (681)
                               ..+-..   +......+.-...+.|+.++|..+|+..... + -.++.....-++..+.+.+.   ..++.
T Consensus       357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  436 (987)
T PRK09782        357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA  436 (987)
T ss_pred             chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence                     222111   2222222233345677778888887776652 1 22233333355555555544   22221


Q ss_pred             HH----------------------HHHHHH-hCC-CC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHH
Q 047571          434 EI----------------------HAYAVK-NQF-LP--NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAM  485 (681)
Q Consensus       434 ~~----------------------~~~~~~-~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l  485 (681)
                      .+                      ...... .+. ++  +...+..+..++.. +++++|...+.+...  |+......+
T Consensus       437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l  515 (987)
T PRK09782        437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV  515 (987)
T ss_pred             HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence            11                      111111 111 23  45566666666665 777778886666553  443332233


Q ss_pred             HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 047571          486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFL  565 (681)
Q Consensus       486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  565 (681)
                      ...+...|++++|...|+++...  .|+...+..+..++...|+.+.|...++..++.+ +.....+..+.......|++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~  592 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQP  592 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCH
Confidence            34445788888888888877553  4444455566667777888888888888877654 22233333333344455888


Q ss_pred             HHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          566 ECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       566 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ++|...+++...  |+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++...|++++|++.++...+
T Consensus       593 ~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~  671 (987)
T PRK09782        593 ELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK  671 (987)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888888887776  666777778888888888888888888888753 33667777777788888888888888887765


Q ss_pred             cCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          644 GYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       644 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .   .| +...+..+..++...|++++|+..+++..
T Consensus       672 l---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        672 G---LPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             h---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3   34 36777888888888888888888877654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=2.2e-20  Score=201.43  Aligned_cols=585  Identities=8%  Similarity=-0.063  Sum_probs=417.7

Q ss_pred             ccCCCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571           58 KDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING  137 (681)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  137 (681)
                      ...+...+...|.++.++..+.+.|.+.|++++|+..+++..+..  |+-..|..++..+   ++..+|..+++++.+..
T Consensus        64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~  138 (987)
T PRK09782         64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQ  138 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhC
Confidence            355778888999999999999999999999999999999998874  4544454444333   88999999999999887


Q ss_pred             CCCchhHHHHHHHH--------hhcCCChhHHHHhhhhcCCCC--CccHHHH-HHHHHHcCCcChhhHHHHHHHHHHcCC
Q 047571          138 LENNGFLRTKLVKM--------YTSCGSFEDAEKVFDESSSES--VYPWNAL-LRGAVIAGKKRYRGVLFNYMKMRELGV  206 (681)
Q Consensus       138 ~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-l~~~~~~~~~~~~~a~~~~~~m~~~g~  206 (681)
                       +-+..++..+...        |.+.++..++++  .....++  ....... ...|.+.+  ++++++..+.++.+.+.
T Consensus       139 -P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~--dw~~Ai~lL~~L~k~~p  213 (987)
T PRK09782        139 -KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK--QWSQADTLYNEARQQNT  213 (987)
T ss_pred             -CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh--CHHHHHHHHHHHHhcCC
Confidence             5556666666665        777777777776  3333343  3333333 77888888  99999999999999863


Q ss_pred             CCChhhHHHHHHHhhc-cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC-----CChhh--
Q 047571          207 QLNVYTFSCVIKSFAG-ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD-----RDIVV--  278 (681)
Q Consensus       207 ~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~--  278 (681)
                      . +..-...+-.+|.. .++ +.+..+++.    .+..+......+...|.+.|+.++|.+.++++..     ++..+  
T Consensus       214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~  287 (987)
T PRK09782        214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL  287 (987)
T ss_pred             C-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence            3 33345556567776 466 667666442    3446788889999999999999999999998764     11111  


Q ss_pred             ----------------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHh--hhhhhc
Q 047571          279 ----------------------------WGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIG--EAWARK  328 (681)
Q Consensus       279 ----------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~  328 (681)
                                                  .-.++..+.+.+.++.+.++.      .+.|.....  .++...  ..+...
T Consensus       288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~~~~~~~~  359 (987)
T PRK09782        288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVSVATRNKA  359 (987)
T ss_pred             HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhccccCchh
Confidence                                        112245566667776555442      244444432  332222  234555


Q ss_pred             ccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhhHHHHHHHHHhCCC---hHHHHH
Q 047571          329 LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE-R-----NEILWTALMSGYVSNGR---LEQALR  399 (681)
Q Consensus       329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~---~~~A~~  399 (681)
                      ++...+..+.+.  .+.+....--+.-...+.|+.++|.++|+.... +     +....+-++..|.+.+.   ..++..
T Consensus       360 ~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  437 (987)
T PRK09782        360 EALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI  437 (987)
T ss_pred             HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence            555555555554  333444444555566788999999999988765 2     23344566777777665   333333


Q ss_pred             H----------------------HHHHHHc-CcCC---CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571          400 S----------------------IAWMQQE-GFRP---DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS  453 (681)
Q Consensus       400 ~----------------------~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  453 (681)
                      +                      .+..... +..|   +...|..+..++.. ++.++|...+.......  |+......
T Consensus       438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~  514 (987)
T PRK09782        438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA  514 (987)
T ss_pred             hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence            3                      1111111 1223   44555555555555 78888999888877654  55544444


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK  531 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  531 (681)
                      +...+...|++++|...|+++..  ++...+..+..++.+.|+.++|...+++..+.. +.+...+..+.......|+++
T Consensus       515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~  593 (987)
T PRK09782        515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE  593 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence            55556789999999999998764  444556677788899999999999999998864 223333334444555669999


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +|...+++.++..  |+...+..+..++.+.|++++|...+++...  |+ ...++.+..++...|++++|++.+++..+
T Consensus       594 eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~  671 (987)
T PRK09782        594 LALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK  671 (987)
T ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999865  4688899999999999999999999998887  54 66788888999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          609 GGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       609 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .. +-+...+..+..++...|++++|+..+++..+   ..|+ ..+.......+.+..+++.|.+-+++--
T Consensus       672 l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~---l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        672 GL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID---DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            53 34788899999999999999999999998875   3565 5667777888888888999988776643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=1.2e-17  Score=152.67  Aligned_cols=442  Identities=12%  Similarity=0.090  Sum_probs=303.7

Q ss_pred             cccCCCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH--hcCChhHH-HHHHHHH
Q 047571           57 EKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACV--RTRSLVEG-RLIHTHI  133 (681)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~  133 (681)
                      ..+.|....-.++.....-+.++ .+..+|...++--+|+.|...|++.+...-..|++..+  .+.++.-+ ++.|-.|
T Consensus       101 ~l~~F~P~~l~~~~~V~~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~  179 (625)
T KOG4422|consen  101 QLPVFRPRHLADPLQVETENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGM  179 (625)
T ss_pred             cccccCchhcCCchhhcchhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhc
Confidence            33445555555555555545544 45678899999999999999998888877766665433  33343332 4556666


Q ss_pred             HHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhH
Q 047571          134 RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTF  213 (681)
Q Consensus       134 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  213 (681)
                      ...| +.+..+|        +.|++.+   ++-+.......++..+|.|+++..  ..+.|.+++.+..+...+.+..+|
T Consensus       180 ~~~~-E~S~~sW--------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~--~~ERA~~L~kE~~~~k~kv~~~aF  245 (625)
T KOG4422|consen  180 RNFG-EDSTSSW--------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFS--SLERARELYKEHRAAKGKVYREAF  245 (625)
T ss_pred             cccc-ccccccc--------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHH--hHHHHHHHHHHHHHhhheeeHHhh
Confidence            6655 4444433        3455544   555666677788999999999998  999999999999999899999999


Q ss_pred             HHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChH
Q 047571          214 SCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRW  293 (681)
Q Consensus       214 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~  293 (681)
                      |.+|.+-.    +....+++.+|....+.||..|+|+++.+..+.|+++.|.+                           
T Consensus       246 N~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------  294 (625)
T KOG4422|consen  246 NGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------  294 (625)
T ss_pred             hhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------
Confidence            99998754    22337899999999999999999999999999999988876                           


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcc-cchhhhhhhhc-------cCCCCCchHHhHHHHHHHhcCCHHH
Q 047571          294 EALDCARWMIREGIYPNSVVLTILLPVIGEAWARKL-GQEVHAYVLKN-------ERYSEELFVRSSLVDMYCKCRDMNS  365 (681)
Q Consensus       294 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~  365 (681)
                      .|++++.+|++.|+.|...+|..+|..+++.++..+ +..++..+...       +..+.|...|...+..|.+..+.+.
T Consensus       295 aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~L  374 (625)
T KOG4422|consen  295 AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLEL  374 (625)
T ss_pred             HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHH
Confidence            356788889999999999999999998888877644 34444444332       1233455667777888888899888


Q ss_pred             HHHHHhhcCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHH
Q 047571          366 AWRVFYETEER-----------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKE  434 (681)
Q Consensus       366 a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  434 (681)
                      |..+-.-....           ...-|..+....|.....+.-+..|+.|.-.-+-|+..+...++++....+.++-..+
T Consensus       375 A~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipR  454 (625)
T KOG4422|consen  375 AYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPR  454 (625)
T ss_pred             HHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHH
Confidence            88876555432           1234667788888888999999999999988888999999999999999999999999


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcC-Ch---HH----------HHHHHhh-------CCC--CCcchHHHHHHHHHh
Q 047571          435 IHAYAVKNQFLPNVSIITSLMIMYSKCG-VL---DY----------SLKLFDE-------MEV--RNVISWTAMIDSCIE  491 (681)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---~~----------a~~~~~~-------~~~--~~~~~~~~li~~~~~  491 (681)
                      +|.+++..|..-....-.-++..+++.. ++   +.          |..+++.       +.+  -.....+.+.-.+.+
T Consensus       455 iw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R  534 (625)
T KOG4422|consen  455 IWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLR  534 (625)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHH
Confidence            9999999886555444444444444433 11   00          0011110       111  122334444445556


Q ss_pred             cCChhHHHHHHHHhHhCC----CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC
Q 047571          492 NGRLDDALGVFRSMQLSK----HRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD  544 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  544 (681)
                      .|+.++|.+++.-+.+++    ..|......-+++.....++...|...++-+...+
T Consensus       535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            666666666666654433    12333333344444455555555555555554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.86  E-value=9.1e-17  Score=162.13  Aligned_cols=544  Identities=13%  Similarity=0.058  Sum_probs=307.7

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHhhcCCChhHHHHhh
Q 047571           88 LKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL--ENNGFLRTKLVKMYTSCGSFEDAEKVF  165 (681)
Q Consensus        88 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~  165 (681)
                      .+.|...|....+.. +++.-.+..-.......+++..|..+|........  .||+.+  .+..++.+.|+.+.|+..|
T Consensus       146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence            588999999988764 44554444334444567899999999999776543  455543  3446778899999999999


Q ss_pred             hhcCCCCCccHHHHHHH-HHHc--C-CcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCC
Q 047571          166 DESSSESVYPWNALLRG-AVIA--G-KKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGF  241 (681)
Q Consensus       166 ~~~~~~~~~~~~~ll~~-~~~~--~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~  241 (681)
                      ....+-|+..-++++.- ....  . ...+..++..+...-... .-|+...+.|.+.+.-.|++..+..+...+.....
T Consensus       223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            98887766555544432 1111  1 113444555544433221 23556778888889999999999999988877653


Q ss_pred             CCC--cHHHhHHHHHHHhcCChHHHHHHHhccCCC--C--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhH
Q 047571          242 VDY--LILRTSLIDMYFKCGKIKLARRVFDETGDR--D--IVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVL  314 (681)
Q Consensus       242 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~  314 (681)
                      ...  ...|-.+.++|-..|++++|...|.+....  |  +..+--+...+.+.|+++.+...|+...+.  .|| ..|.
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm  379 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETM  379 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHH
Confidence            222  345666888999999999999999776552  2  344556788899999999999999998875  344 4455


Q ss_pred             HHHHHHHhhhh----hhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC--------CCChhhHH
Q 047571          315 TILLPVIGEAW----ARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE--------ERNEILWT  382 (681)
Q Consensus       315 ~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~  382 (681)
                      ..|-..|...+    ..+.|..++....+.  .+.|...|-.+...+...+- -.++..|....        .......|
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LN  456 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLN  456 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            55555555443    345555555555554  35566666666655544332 22233332221        23555667


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHc---CcCCCHH------HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571          383 ALMSGYVSNGRLEQALRSIAWMQQE---GFRPDVV------TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS  453 (681)
Q Consensus       383 ~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  453 (681)
                      .+...+...|++..|...|......   ...+|..      +-..+.......++.+.|.+.|..+.+.. +.-+..|-.
T Consensus       457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylR  535 (1018)
T KOG2002|consen  457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLR  535 (1018)
T ss_pred             hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHH
Confidence            7777777777777777777766544   1223331      12223334445556677777777666543 223333444


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCHHHHHHHHHHhccc--
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSK-HRPDSVAMARMLSVSGQL--  527 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~--  527 (681)
                      +.......+...+|...+.++..   .++..++.+...+.+...+..|.+-|....+.- ..+|..+...|.+.|...  
T Consensus       536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence            43333334556666666666553   344455555556666666666666555444321 124555544444433211  


Q ss_pred             ----------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCC
Q 047571          528 ----------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYND  594 (681)
Q Consensus       528 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~  594 (681)
                                +..++|+++|.++++.. +-+....+-+.-+++..|++.+|..+|.++.+   ....+|-.+...|...|
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~  694 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG  694 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence                      12334444444444432 12233334444444444555555555544444   12344444445555555


Q ss_pred             ChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          595 LCQEALSLFDKMRNGGF-TPNHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      ++..|+++|+...+.-. ..+......|..++.+.|++.+|.+.+....
T Consensus       695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            55555555544333321 1233444444445555555555544444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.4e-16  Score=160.72  Aligned_cols=536  Identities=13%  Similarity=0.044  Sum_probs=383.3

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 047571           61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQ--GIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL  138 (681)
Q Consensus        61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  138 (681)
                      |..++...|+|..++-.-.......|++..|+.+|......  ..+||+.  -.+..++.+.|+.+.|...|......+ 
T Consensus       153 F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-  229 (1018)
T KOG2002|consen  153 FHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLD-  229 (1018)
T ss_pred             HHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC-
Confidence            44556667777777777777777899999999999997654  3455554  334466788999999999999998776 


Q ss_pred             CCchhHHHHHHHHhhcC---CChhHHHHhhhhcC---CCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCC--CCh
Q 047571          139 ENNGFLRTKLVKMYTSC---GSFEDAEKVFDESS---SESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQ--LNV  210 (681)
Q Consensus       139 ~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~  210 (681)
                      +-++.++..|.-.-...   ..+..+..++...-   ..++...+.|-..|.-.+  ++..++.+...+......  .-.
T Consensus       230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~--dy~~v~~la~~ai~~t~~~~~~a  307 (1018)
T KOG2002|consen  230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK--DYERVWHLAEHAIKNTENKSIKA  307 (1018)
T ss_pred             hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc--cHHHHHHHHHHHHHhhhhhHHHH
Confidence            34444444443333333   33455555555432   456677888888888888  999999999988775421  123


Q ss_pred             hhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHH
Q 047571          211 YTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFA  287 (681)
Q Consensus       211 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~  287 (681)
                      ..|-.+.+++-..|+++.|.+.|.+..+..-.--...+-.|.+.|.+.|+++.+...|+.+...   +..+...+...|.
T Consensus       308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            3688889999999999999999988776542222344556889999999999999999988763   4455566666666


Q ss_pred             hcC----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhh----hhccCCCCCchHHhHHHHHHHh
Q 047571          288 HNR----LRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYV----LKNERYSEELFVRSSLVDMYCK  359 (681)
Q Consensus       288 ~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~  359 (681)
                      ..+    ..+.|..++.+..+.- ..|...|..+...+.....+.. ...+..+    ... +.++.+...|.+...+..
T Consensus       388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~  464 (1018)
T KOG2002|consen  388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESK-GKQIPPEVLNNVASLHFR  464 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHH
Confidence            664    4566666666655542 3455667666666655544333 4444433    333 455778888999999999


Q ss_pred             cCCHHHHHHHHhhcCCC-------Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHH-Hhhc
Q 047571          360 CRDMNSAWRVFYETEER-------NE------ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIP-VCSQ  425 (681)
Q Consensus       360 ~~~~~~a~~~~~~~~~~-------~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~  425 (681)
                      .|++..|...|......       +.      .+--.+...+-..++++.|.+.|..+...  .|.-+....-+. ....
T Consensus       465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~  542 (1018)
T KOG2002|consen  465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD  542 (1018)
T ss_pred             hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence            99999999999876542       22      12223455566678999999999999886  466555443333 3334


Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHh---------
Q 047571          426 LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RNVISWTAMIDSCIE---------  491 (681)
Q Consensus       426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~---------  491 (681)
                      .+...+|...+++....+ ..++..++.+...+.+...+..|.+-|..+.+     +|..+.-+|.+.|.+         
T Consensus       543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~  621 (1018)
T KOG2002|consen  543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP  621 (1018)
T ss_pred             ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence            577889999998887654 45556666677788888888888875554442     355555555554442         


Q ss_pred             ---cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          492 ---NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       492 ---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                         .+..++|+++|.+..... +-|...-+.+.-.++..|++..|..+|.++.+... -...+|-.+.++|..+|++-.|
T Consensus       622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A  699 (1018)
T KOG2002|consen  622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA  699 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence               234778999999888763 44556667777778899999999999999998653 3567888999999999999999


Q ss_pred             HHHhhhCCC-----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          569 KLVFDAVPV-----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       569 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      .++|+....     .+....+.|.+++...|.+.+|.+.+......
T Consensus       700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            999987665     45778899999999999999999999888875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=7.6e-18  Score=161.08  Aligned_cols=432  Identities=12%  Similarity=0.146  Sum_probs=250.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTS  154 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  154 (681)
                      ...+.....+.|++.+|++..+..-+.+ +-+......+-..+.+..+.+.....-....+.. +.-..+|..+.+.+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            5667788889999999999888776554 2233333344444555555555444433333332 4455677778888877


Q ss_pred             CCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHhhccCchhhhHHHH
Q 047571          155 CGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQL-NVYTFSCVIKSFAGASALMQGLKTH  233 (681)
Q Consensus       155 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~  233 (681)
                      .|++++|+.+++.+.                                 +.  +| ....|..+..++...|+.+.|.+.|
T Consensus       129 rg~~~~al~~y~~ai---------------------------------el--~p~fida~inla~al~~~~~~~~a~~~~  173 (966)
T KOG4626|consen  129 RGQLQDALALYRAAI---------------------------------EL--KPKFIDAYINLAAALVTQGDLELAVQCF  173 (966)
T ss_pred             hchHHHHHHHHHHHH---------------------------------hc--CchhhHHHhhHHHHHHhcCCCcccHHHH
Confidence            787777777776543                                 22  22 2224444444555555555555555


Q ss_pred             HHHHHhCCCCCcH-HHhHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571          234 ALLIKNGFVDYLI-LRTSLIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP  309 (681)
Q Consensus       234 ~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  309 (681)
                      .+..+.  .|+.. ..+.+-..+...|++++|...+.+..+  | =.+.|+.|...+-..|+...|++.|++.++.  .|
T Consensus       174 ~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP  249 (966)
T KOG4626|consen  174 FEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP  249 (966)
T ss_pred             HHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence            444432  23222 122223333345556666555544333  2 2345666666666777777777777666542  23


Q ss_pred             ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHH
Q 047571          310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMS  386 (681)
Q Consensus       310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~  386 (681)
                      +-                                   ...|-.|-..|...+.++.|...+.+...  | ..+.+..+..
T Consensus       250 ~f-----------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~  294 (966)
T KOG4626|consen  250 NF-----------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC  294 (966)
T ss_pred             cc-----------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE
Confidence            21                                   11122333344444444444444443321  2 3445555555


Q ss_pred             HHHhCCChHHHHHHHHHHHHcCcCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 047571          387 GYVSNGRLEQALRSIAWMQQEGFRPD-VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD  465 (681)
Q Consensus       387 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  465 (681)
                      .|-.+|+.+.|+..+++..+.  .|+ ...|+.+..++-..|++.+|.+.+....... +......+.|..+|...|.++
T Consensus       295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccch
Confidence            666677777777777776664  333 3556777777777777777777777766653 334555666777777777777


Q ss_pred             HHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHH
Q 047571          466 YSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       466 ~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                      +|..+|....+  |. ...++.|...|-++|++++|+..|++..+  +.|+.. .|+.+...|...|+.+.|.+.+...+
T Consensus       372 ~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  372 EATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             HHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            77777776665  22 23567777777777888888888777766  456543 56666666666677777777776666


Q ss_pred             HcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHH
Q 047571          542 KKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEA  589 (681)
Q Consensus       542 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~  589 (681)
                      ..+  |. .+..+.|...|...|++.+|..-+++...  || ...|..++.+
T Consensus       450 ~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  450 QIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             hcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence            532  33 44556666666666666666666666555  44 3344444433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=1.6e-18  Score=175.38  Aligned_cols=291  Identities=13%  Similarity=0.081  Sum_probs=179.0

Q ss_pred             HHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC---HHHHHHHHHHhhccCCh
Q 047571          356 MYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD---VVTVATVIPVCSQLKAL  429 (681)
Q Consensus       356 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~  429 (681)
                      .+...|++++|...|+++.+.   +..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|++
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            344556666666666666543   334566666666677777777777766665432211   13455556666666777


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC--Cc------chHHHHHHHHHhcCChhHHHHH
Q 047571          430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR--NV------ISWTAMIDSCIENGRLDDALGV  501 (681)
Q Consensus       430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~------~~~~~li~~~~~~~~~~~A~~~  501 (681)
                      +.|..+|+.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.  +.      ..+..+...+.+.|++++|...
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            77777776666542 344556666666666777777777666666431  11      1234455556667777777777


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571          502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG  579 (681)
Q Consensus       502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~  579 (681)
                      |+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++..  |+
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            77766542 2234455556666666777777777777766543333345566666777777777777777776554  55


Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhhhcCCCCCCh
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ---AGFADEACRIFNVMSRGYKIEALE  651 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~  651 (681)
                      ...+..++..+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.++++.+++.|.+. ++.|++
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p  353 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP  353 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence            555566777777777777777777777663  5666677666665553   44677777777777654 444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=4.8e-18  Score=171.83  Aligned_cols=292  Identities=13%  Similarity=0.079  Sum_probs=194.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCC
Q 047571          284 AGFAHNRLRWEALDCARWMIREGIYPN-SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRD  362 (681)
Q Consensus       284 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  362 (681)
                      ..+...|++++|+..|+++.+.+  |+ ..++.                                    .+...+...|+
T Consensus        43 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~------------------------------------~la~~~~~~g~   84 (389)
T PRK11788         43 LNFLLNEQPDKAIDLFIEMLKVD--PETVELHL------------------------------------ALGNLFRRRGE   84 (389)
T ss_pred             HHHHhcCChHHHHHHHHHHHhcC--cccHHHHH------------------------------------HHHHHHHHcCc
Confidence            34556677777777777777642  32 22333                                    33444444444


Q ss_pred             HHHHHHHHhhcCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHH
Q 047571          363 MNSAWRVFYETEERN-------EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEI  435 (681)
Q Consensus       363 ~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  435 (681)
                      +++|..+++.+....       ...+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.
T Consensus        85 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~  163 (389)
T PRK11788         85 VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDV  163 (389)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHH
Confidence            444444444433211       1245556666666677777777776666542 23455666666666777777777777


Q ss_pred             HHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571          436 HAYAVKNQFLPNV----SIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       436 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      ++.+.+.+..+..    ..+..+...+.+.|++++|...|+++.+  | +...+..+...+.+.|++++|.+.++++...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7766654422211    1344566666777778888777777654  2 2345666777788888888888888888765


Q ss_pred             CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHH
Q 047571          509 KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAI  586 (681)
Q Consensus       509 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l  586 (681)
                      +......++..+..++...|+.++|...++.+.+..  |+...+..++..+.+.|++++|..+++++..  |+...++.+
T Consensus       244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l  321 (389)
T PRK11788        244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL  321 (389)
T ss_pred             ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            322223456777788888888888888888877753  4555667888889999999999999987666  888888888


Q ss_pred             HHHHHc---CCChHHHHHHHHHHHhCCCCCCHH
Q 047571          587 IEAYGY---NDLCQEALSLFDKMRNGGFTPNHF  616 (681)
Q Consensus       587 ~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~  616 (681)
                      +..+..   .|+.++++.++++|.+.++.|++.
T Consensus       322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            877664   568999999999999988777665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-17  Score=158.92  Aligned_cols=367  Identities=13%  Similarity=0.146  Sum_probs=258.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHH-hHHHH
Q 047571          278 VWGSMIAGFAHNRLRWEALDCARWMIREGIYP-NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVR-SSLVD  355 (681)
Q Consensus       278 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~  355 (681)
                      +|..+...+-..|++++|+.+++.+.+.  +| ....|..+..++...|+.+.|...|....+.   .|+.... +.+-.
T Consensus       118 ~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgn  192 (966)
T KOG4626|consen  118 AYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhH
Confidence            3444444444444444444444444432  22 1233444444444444444444444433322   2222221 22333


Q ss_pred             HHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC-HHHHHHHHHHhhccCChhH
Q 047571          356 MYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD-VVTVATVIPVCSQLKALNH  431 (681)
Q Consensus       356 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~  431 (681)
                      ..-..|++.+|...+.+..+.   =.+.|+.|.-.+..+|+...|+..|++....  .|+ ...|..|-..+...+.++.
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence            344467777777777665543   2457888888888888888888888887764  444 3456677777888888888


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571          432 GKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      |...+....... +.....+..+...|...|.++.|+..+++..+  |+ ...|+.|..++-..|++.+|.+.|.+....
T Consensus       271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l  349 (966)
T KOG4626|consen  271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL  349 (966)
T ss_pred             HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence            888887766543 33556677777888889999999999988876  43 357899999999999999999999888875


Q ss_pred             CCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhH
Q 047571          509 KHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITW  583 (681)
Q Consensus       509 g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~  583 (681)
                        .|+ ....+.|...+...|.++.|..+|....+-  -|. ....+.|...|...|++++|...+++..+  |+ ..+|
T Consensus       350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~  425 (966)
T KOG4626|consen  350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL  425 (966)
T ss_pred             --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence              343 346778888899999999999999888764  233 55678889999999999999999998887  55 5689


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH
Q 047571          584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDIL  661 (681)
Q Consensus       584 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~  661 (681)
                      +.+...|...|+.+.|++.+.+...  +.| =...++.|...|...|+..+|++-++...   +++|| +..|..++.++
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL---klkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL---KLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH---ccCCCCchhhhHHHHHH
Confidence            9999999999999999999999988  456 45778899999999999999999998665   56777 55666666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=4.2e-16  Score=165.91  Aligned_cols=249  Identities=11%  Similarity=-0.015  Sum_probs=177.1

Q ss_pred             CCChHHHHHHHHHHHHcC-cCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571          391 NGRLEQALRSIAWMQQEG-FRPD-VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       391 ~~~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  468 (681)
                      .+++++|.+.|+...+.+ ..|+ ...+..+...+...|++++|...++...+.. +.....|..+...+...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            467778888888877654 2332 3445556666677888888888888877653 233556777777788888888888


Q ss_pred             HHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          469 KLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       469 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                      ..|+++.+   .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++..++.. 
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-  463 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-  463 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            88877654   245677777778888888888888888887753 3345556667777778888888888888877643 


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CCh-h-------hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH
Q 047571          546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGS-I-------TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH  615 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  615 (681)
                      +.++.++..+..++...|++++|...|++...  |+. .       .++..+..+...|++++|.+++++..+.. +.+.
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~  542 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD  542 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence            33567778888888888888888888877655  221 1       12222233444689999999999888753 3355


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..+..+...+.+.|++++|+++|++..+
T Consensus       543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       543 IAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            6788888999999999999999988765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=2.9e-16  Score=167.09  Aligned_cols=420  Identities=11%  Similarity=-0.031  Sum_probs=289.4

Q ss_pred             HHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 047571          246 ILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVLTILLPVIG  322 (681)
Q Consensus       246 ~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~  322 (681)
                      ..+......+.+.|++++|++.|++...  |+...|..+..+|.+.|++++|++.++...+.  .|+ ...+..+..++.
T Consensus       128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            3455677888899999999999988654  57778888889999999999999999988875  343 456777778888


Q ss_pred             hhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 047571          323 EAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIA  402 (681)
Q Consensus       323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~  402 (681)
                      ..|+++.|..-+..+....++...  ....++..+........+...++.-.. +...+..+.. +...........-+.
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~  281 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNE--QSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE  281 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccH--HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence            888888888777665544232221  111222222221122333333332221 2222222222 222212222211111


Q ss_pred             HHHHcCcCCCH-HHHHHHH---HHhhccCChhHHHHHHHHHHHhC-CCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047571          403 WMQQEGFRPDV-VTVATVI---PVCSQLKALNHGKEIHAYAVKNQ-FLP-NVSIITSLMIMYSKCGVLDYSLKLFDEMEV  476 (681)
Q Consensus       403 ~m~~~g~~p~~-~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  476 (681)
                      .-.+  ..+.. ..+..+.   .-....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...+++..+
T Consensus       282 ~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~  359 (615)
T TIGR00990       282 DSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE  359 (615)
T ss_pred             cccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1111  11111 0111111   01133568999999999998765 223 455678888889999999999999999875


Q ss_pred             --CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH
Q 047571          477 --RN-VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA  553 (681)
Q Consensus       477 --~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  553 (681)
                        |+ ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.++.. +.+...+.
T Consensus       360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~  437 (615)
T TIGR00990       360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI  437 (615)
T ss_pred             cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence              43 4477888888999999999999999998763 3456788888889999999999999999998864 23467788


Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-----H-HHHHHHHH
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-----F-TFKVLLSI  624 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~-~~~~l~~~  624 (681)
                      .+..++.+.|++++|...+++...  | +...|+.+...+...|++++|++.|++..+..-..+.     . .+...+..
T Consensus       438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~  517 (615)
T TIGR00990       438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL  517 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence            889999999999999999998766  4 4678899999999999999999999999885311111     1 11222223


Q ss_pred             HhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          625 CNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +...|++++|.+++++..+.   .|+ ...+..++.++.+.|++++|++++++..
T Consensus       518 ~~~~~~~~eA~~~~~kAl~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       518 FQWKQDFIEAENLCEKALII---DPECDIAVATMAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHHhhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34469999999999987653   344 5578899999999999999999998754

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=7.3e-15  Score=134.77  Aligned_cols=424  Identities=14%  Similarity=0.099  Sum_probs=284.3

Q ss_pred             CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhh--ccCchhh-hHHHHHHHHHhCCCCCcHHHh
Q 047571          173 VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFA--GASALMQ-GLKTHALLIKNGFVDYLILRT  249 (681)
Q Consensus       173 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~  249 (681)
                      +.+-|.|+... ..+  ...++.-+|+.|+..|+..+...--.+++..+  +..++.- -++-|-.|.+.|-. +..+| 
T Consensus       116 V~~E~nL~kmI-S~~--EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-  190 (625)
T KOG4422|consen  116 VETENNLLKMI-SSR--EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-  190 (625)
T ss_pred             hcchhHHHHHH-hhc--ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-
Confidence            34466666544 444  68888889999999988777766555555433  2222222 22344455555422 22222 


Q ss_pred             HHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcc
Q 047571          250 SLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKL  329 (681)
Q Consensus       250 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  329 (681)
                             +.|.+.+   ++-+...+...+|..||.+.|+-...+.|.+++++-.....+.+..+||.+|.+-.-.    .
T Consensus       191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~  256 (625)
T KOG4422|consen  191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V  256 (625)
T ss_pred             -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence                   3343333   5556666778899999999999999999999999999888899999999988765433    2


Q ss_pred             cchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCc
Q 047571          330 GQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGF  409 (681)
Q Consensus       330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  409 (681)
                      ..++..+|... ...||..++|+++.+..+.|+++.|..                           .|.+++.+|++-|+
T Consensus       257 ~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGV  308 (625)
T KOG4422|consen  257 GKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGV  308 (625)
T ss_pred             cHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCC
Confidence            25666677666 777777777777777777777665533                           57788999999999


Q ss_pred             CCCHHHHHHHHHHhhccCChhH-HHHHHHHHHH----hCCCC----ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----
Q 047571          410 RPDVVTVATVIPVCSQLKALNH-GKEIHAYAVK----NQFLP----NVSIITSLMIMYSKCGVLDYSLKLFDEMEV----  476 (681)
Q Consensus       410 ~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----  476 (681)
                      .|...+|..+|.-+++.++..+ +..++.++..    ..++|    +...|..-+..|....+.+-|.++-.-...    
T Consensus       309 ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~  388 (625)
T KOG4422|consen  309 EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW  388 (625)
T ss_pred             CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch
Confidence            9999999999999998887754 4444444443    22333    445566778888888888888887665543    


Q ss_pred             ----CC---cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh
Q 047571          477 ----RN---VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP  549 (681)
Q Consensus       477 ----~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  549 (681)
                          ++   ..-|..+....|.....+..+..|+.|+-+-+-|+..+...++++....+.++-..++|.+++..|.....
T Consensus       389 ~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~  468 (625)
T KOG4422|consen  389 KFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS  468 (625)
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence                22   23466778888889999999999999999888999999999999999999999999999999998877666


Q ss_pred             hHHHHHHHHHHhcC-CH--------H-----HHHHHhh-------hCCCC--ChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571          550 FVAAENIKMYGMCG-FL--------E-----CAKLVFD-------AVPVK--GSITWTAIIEAYGYNDLCQEALSLFDKM  606 (681)
Q Consensus       550 ~~~~~l~~~~~~~g-~~--------~-----~a~~~~~-------~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m  606 (681)
                      .....+...+++.. +.        .     -|..+++       ++...  .....+..+-.+.+.|+.++|.+++.-+
T Consensus       469 ~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~  548 (625)
T KOG4422|consen  469 DLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLF  548 (625)
T ss_pred             HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence            66666665555543 11        0     0111111       11111  1233444555555666666666666665


Q ss_pred             HhCCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          607 RNGGF----TPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       607 ~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+++-    .|......-+++.-....+...|+.+++.|..
T Consensus       549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~  589 (625)
T KOG4422|consen  549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA  589 (625)
T ss_pred             HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            43331    12233333445555555666666666666643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.79  E-value=3.5e-16  Score=165.69  Aligned_cols=325  Identities=9%  Similarity=-0.084  Sum_probs=231.2

Q ss_pred             hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 047571          311 SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSG  387 (681)
Q Consensus       311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~  387 (681)
                      ......++..+.+.|+.+.|..++..+...  .+.+......++.+....|+++.|...++.+...   +...+..+...
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~  119 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV  119 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            344556677788888888888888888776  4444445555666677788888888888887652   45677778888


Q ss_pred             HHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571          388 YVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS  467 (681)
Q Consensus       388 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  467 (681)
                      +...|++++|...+++..... +.+...+..+...+...|+.++|...++.+......+ ...+..+ ..+...|++++|
T Consensus       120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA  196 (656)
T PRK15174        120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED  196 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence            888888888888888887752 2234566677777888888888888888776654322 2233223 346778888888


Q ss_pred             HHHHhhCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH----HHHHHHH
Q 047571          468 LKLFDEMEVR----NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL----GKEIHGQ  539 (681)
Q Consensus       468 ~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~  539 (681)
                      ...++.+.+.    +...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++    |...++.
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~  275 (656)
T PRK15174        197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH  275 (656)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence            8888876542    22334445667778888888888888888754 3345566667777788888775    7788887


Q ss_pred             HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-
Q 047571          540 VLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-  615 (681)
Q Consensus       540 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-  615 (681)
                      +.+.. +.+...+..+...+...|++++|...+++...  |+ ...+..+..++...|++++|+..++++.+.  .|+. 
T Consensus       276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~  352 (656)
T PRK15174        276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTS  352 (656)
T ss_pred             HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccch
Confidence            77754 23567778888888888888888888887666  43 456667777888888888888888888774  4443 


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..+..+..++...|++++|++.|+...+.
T Consensus       353 ~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            33444566778888888888888877654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.78  E-value=1e-14  Score=158.18  Aligned_cols=394  Identities=11%  Similarity=-0.016  Sum_probs=198.1

Q ss_pred             HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571          180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG  259 (681)
Q Consensus       180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  259 (681)
                      +......|  +.++|+.++.+..... +.+...+..+...+.+.|++++|.++++...+.. +.+...+..+...+...|
T Consensus        22 ~~ia~~~g--~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g   97 (765)
T PRK10049         22 LQIALWAG--QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG   97 (765)
T ss_pred             HHHHHHcC--CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence            33444444  5555555555544311 2222234455555555555555555555544432 222333444445555555


Q ss_pred             ChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhh
Q 047571          260 KIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAY  336 (681)
Q Consensus       260 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  336 (681)
                      +.++|+..+++...  | +.. +..+...+...|+.++|+..++++.+.  .|                           
T Consensus        98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P---------------------------  147 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--AP---------------------------  147 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CC---------------------------
Confidence            55555555554432  1 223 444444555555555555555555442  22                           


Q ss_pred             hhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChh--------hHHHHHHHHH-----hCCCh---HHHHHH
Q 047571          337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEI--------LWTALMSGYV-----SNGRL---EQALRS  400 (681)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~li~~~~-----~~~~~---~~A~~~  400 (681)
                              .+...+..+...+...+..+.|...++.... ++.        ....+++...     ..+++   ++|++.
T Consensus       148 --------~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        148 --------QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ  218 (765)
T ss_pred             --------CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence                    2223333444455555666666666655444 110        1111111111     11122   556666


Q ss_pred             HHHHHHc-CcCCCHH-HHH----HHHHHhhccCChhHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571          401 IAWMQQE-GFRPDVV-TVA----TVIPVCSQLKALNHGKEIHAYAVKNQFL-PNVSIITSLMIMYSKCGVLDYSLKLFDE  473 (681)
Q Consensus       401 ~~~m~~~-g~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~  473 (681)
                      ++.+.+. ...|+.. .+.    ..+.++...|+.++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|++
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence            6666543 1122211 111    0122334456666666666666654421 211 111234456666666666666665


Q ss_pred             CCCCC-------cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          474 MEVRN-------VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       474 ~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                      +.+.+       ...+..+..++...|++++|.++++++....  |... .+..                       ...
T Consensus       298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~--P~~~~~~~~-----------------------~~~  352 (765)
T PRK10049        298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS--PPFLRLYGS-----------------------PTS  352 (765)
T ss_pred             HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--CceEeecCC-----------------------CCC
Confidence            54311       1123344445556666666666666665431  1100 0000                       000


Q ss_pred             CCC---hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHH
Q 047571          546 ASV---PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTF  618 (681)
Q Consensus       546 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~  618 (681)
                      .|+   ...+..+...+...|++++|.++++++..  |+ ...+..+...+...|++++|++.+++..+.  .| +...+
T Consensus       353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~  430 (765)
T PRK10049        353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLE  430 (765)
T ss_pred             CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHH
Confidence            122   12344556666777777777777776655  33 556777777788888888888888888774  45 45666


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          619 KVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       619 ~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..++..+...|++++|.++++.+.+.
T Consensus       431 ~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        431 VEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            67777778888888888888887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.78  E-value=2.2e-15  Score=163.20  Aligned_cols=389  Identities=9%  Similarity=-0.020  Sum_probs=205.6

Q ss_pred             HHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhhh
Q 047571          250 SLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN-SVVLTILLPVIGEAW  325 (681)
Q Consensus       250 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~  325 (681)
                      -.+......|+.++|++++.+...   .+...+..+...+...|++++|..++++..+.  .|+ ......+...+...|
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g   97 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAG   97 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence            334444445555555555544332   12223444445555555555555555554432  122 222222223333333


Q ss_pred             hhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 047571          326 ARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIA  402 (681)
Q Consensus       326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~  402 (681)
                      +.++|...++.+.+.  .+.+.. +..+...+...|+.++|...++++.+.   +...+..+..++...+..+.|+..++
T Consensus        98 ~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049         98 QYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID  174 (765)
T ss_pred             CHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            333333333333332  233334 556666666677777777777666542   34445555666666666666666665


Q ss_pred             HHHHcCcCCCHH------HHHHHHHHhh-----ccCCh---hHHHHHHHHHHHh-CCCCChh-HHHHHHHHHHhcCChHH
Q 047571          403 WMQQEGFRPDVV------TVATVIPVCS-----QLKAL---NHGKEIHAYAVKN-QFLPNVS-IITSLMIMYSKCGVLDY  466 (681)
Q Consensus       403 ~m~~~g~~p~~~------~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~  466 (681)
                      ....   .|+..      ....++....     ..+++   +.|.+.++.+.+. ...|+.. .+..             
T Consensus       175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~-------------  238 (765)
T PRK10049        175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR-------------  238 (765)
T ss_pred             hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH-------------
Confidence            4432   22210      0011111110     01111   3333333333322 1111110 0000             


Q ss_pred             HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                                    .....+.++...|++++|+..|+++.+.+.. |+. ....+..++...|++++|...++.+.+...
T Consensus       239 --------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p  303 (765)
T PRK10049        239 --------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE  303 (765)
T ss_pred             --------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence                          0000022233445555566555555554321 221 111134455555566666665555544321


Q ss_pred             CC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-------------C---hhhHHHHHHHHHcCCChHHHHHHHH
Q 047571          546 AS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-------------G---SITWTAIIEAYGYNDLCQEALSLFD  604 (681)
Q Consensus       546 ~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~  604 (681)
                      ..   .......+..++...|++++|..+++.+..  |             +   ...+..+...+...|+.++|++.++
T Consensus       304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~  383 (765)
T PRK10049        304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR  383 (765)
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            11   123344445555666666666666665544  2             2   1244567778889999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          605 KMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       605 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ++.... +.+...+..+...+...|++++|++.+++..+.   .|+ ...+..++..+.+.|++++|..+++++.
T Consensus       384 ~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        384 ELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999863 557888999999999999999999999988753   465 6778888889999999999999998764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.78  E-value=2.3e-15  Score=159.52  Aligned_cols=321  Identities=10%  Similarity=-0.058  Sum_probs=209.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcC
Q 047571          282 MIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCR  361 (681)
Q Consensus       282 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  361 (681)
                      ++..+.+.|++++|+.+++........+ ...+..+..+....|+.+.|...++.+...  .+.+...+..+...+...|
T Consensus        48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         48 FAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence            3444444455555555544444432221 112222223333444555555555444443  3334445566677777778


Q ss_pred             CHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571          362 DMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY  438 (681)
Q Consensus       362 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  438 (681)
                      ++++|...+++...  | +...+..+...+...|+.++|...++.+......+ ...+.. +..+...|++++|...++.
T Consensus       125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARA  202 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence            88888887777654  2 45677777888888888888888888776653222 222222 2346677888888888887


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhH----HHHHHHHhHhCCCC
Q 047571          439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDD----ALGVFRSMQLSKHR  511 (681)
Q Consensus       439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~g~~  511 (681)
                      +.+....++...+..+...+.+.|++++|...+++...  | +...+..+...+...|++++    |+..|++..+.. +
T Consensus       203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P  281 (656)
T PRK15174        203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S  281 (656)
T ss_pred             HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence            76654334444455556777788888888888887764  2 44566777788888888875    788888887753 3


Q ss_pred             CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh-HHHHHH
Q 047571          512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT-WTAIIE  588 (681)
Q Consensus       512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~l~~  588 (681)
                      .+...+..+...+...|++++|...++...+.. +.++..+..+..+|.+.|++++|...++.+..  |+... +..+..
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~  360 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA  360 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            345567777788888888888888888888754 22466677788888888888888888887765  54333 334566


Q ss_pred             HHHcCCChHHHHHHHHHHHhC
Q 047571          589 AYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      ++...|+.++|++.|++..+.
T Consensus       361 al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh
Confidence            778889999999999988774

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=4.7e-14  Score=149.65  Aligned_cols=424  Identities=10%  Similarity=-0.014  Sum_probs=207.8

Q ss_pred             HhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCCh-hhHHHH--HHHHHhcCChHHH
Q 047571          219 SFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDI-VVWGSM--IAGFAHNRLRWEA  295 (681)
Q Consensus       219 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~~~~~~a  295 (681)
                      ...+.|+++.|...|++..+....-...++ .++..+...|+.++|+..+++...++. ..+..+  ...+...|++++|
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            445778888888888888765422112233 777778888888888888888876633 333333  4467777888888


Q ss_pred             HHHHHHHHHcCCCCC-hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571          296 LDCARWMIREGIYPN-SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE  374 (681)
Q Consensus       296 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  374 (681)
                      +++|+++.+..  |+ ...+..+...+...++.++|.+.+..+.+.   .|+...+..++..+...++..+|+..++++.
T Consensus       122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            88888888753  33 233333334444444444444444444332   1222222222222222333333444444443


Q ss_pred             CC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH
Q 047571          375 ER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII  451 (681)
Q Consensus       375 ~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  451 (681)
                      +.   +...+..++.++.+.|-...|+++..+-.+. +.+.  ....+-..        .    ..+.++.+..++.   
T Consensus       197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l~~~--------~----~a~~vr~a~~~~~---  258 (822)
T PRK14574        197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQLERD--------A----AAEQVRMAVLPTR---  258 (822)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHHHHH--------H----HHHHHhhcccccc---
Confidence            32   2333444444444444444444333321110 0000  00000000        0    0000000000000   


Q ss_pred             HHHHHHHHhcCCh---HHHHHHHhhCCC-----CCcc-----hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH
Q 047571          452 TSLMIMYSKCGVL---DYSLKLFDEMEV-----RNVI-----SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMA  518 (681)
Q Consensus       452 ~~l~~~~~~~g~~---~~a~~~~~~~~~-----~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  518 (681)
                             ....++   +.|..-++.+..     |...     ..--.+-++...|+..++++.|+.|...|.+....+-.
T Consensus       259 -------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~  331 (822)
T PRK14574        259 -------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR  331 (822)
T ss_pred             -------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence                   000111   122222222211     1111     11122344555566666666666666555443344555


Q ss_pred             HHHHHhccccchHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-------------
Q 047571          519 RMLSVSGQLKALKLGKEIHGQVLKKDF-----ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-------------  578 (681)
Q Consensus       519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-------------  578 (681)
                      .+.++|...+..++|..++..+.....     .++......|.-+|...+++++|..+++.+..  |             
T Consensus       332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p  411 (822)
T PRK14574        332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP  411 (822)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence            556666666666666666665554321     11222234555566666666666666655544  1             


Q ss_pred             C---hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHH
Q 047571          579 G---SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHY  654 (681)
Q Consensus       579 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~  654 (681)
                      |   ...+..++..+...|+..+|++.++++.... |-|......+.+.+...|.+.+|.+.++....   +.|+ ....
T Consensus       412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~  487 (822)
T PRK14574        412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILE  487 (822)
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHH
Confidence            0   1123334555666677777777777766542 33666666666777777777777776654432   2443 4555


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhc
Q 047571          655 LIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       655 ~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ...+.++...|++++|..+.+.+
T Consensus       488 ~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        488 RAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHH
Confidence            55666666667777766655443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=3.7e-13  Score=142.90  Aligned_cols=448  Identities=11%  Similarity=0.021  Sum_probs=259.8

Q ss_pred             CCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH
Q 047571           67 LHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNV--TTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL  144 (681)
Q Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  144 (681)
                      ..|..+......+-...++|+++.|++.|++..+..  |+.  ..+ .++..+...|+.++|...+++.. .........
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~  104 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRG  104 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHH
Confidence            333444555666777889999999999999998764  332  234 88888888999999999999988 111233334


Q ss_pred             HHHHHHHhhcCCChhHHHHhhhhcCCCC---CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhh
Q 047571          145 RTKLVKMYTSCGSFEDAEKVFDESSSES---VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFA  221 (681)
Q Consensus       145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  221 (681)
                      ...+...+...|++++|+++++++.+.+   ...+..++..+...+  +.++|++.++++...  .|+...+..++..+.
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~--q~~eAl~~l~~l~~~--dp~~~~~l~layL~~  180 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG--RGGVVLKQATELAER--DPTVQNYMTLSYLNR  180 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence            4444668888899999999999887433   233555666677777  888999998887765  566666644444444


Q ss_pred             ccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-ChhhHHHHHHHHHhcCChHHHHHHHH
Q 047571          222 GASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-DIVVWGSMIAGFAHNRLRWEALDCAR  300 (681)
Q Consensus       222 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~  300 (681)
                      ..++..+|.+.++++.+.. +.+...+..++.++.+.|-...|.++..+-+.- +...+.-+-        .+.|.+   
T Consensus       181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~--------~~~~a~---  248 (822)
T PRK14574        181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE--------RDAAAE---  248 (822)
T ss_pred             hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH--------HHHHHH---
Confidence            4566656888888888875 445677778888888888888888887764421 111111100        000111   


Q ss_pred             HHHHcCCCCCh---hhHHHHHHHHhhhhhhcccchhhhhhhhccCC-CCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC
Q 047571          301 WMIREGIYPNS---VVLTILLPVIGEAWARKLGQEVHAYVLKNERY-SEELFVRSSLVDMYCKCRDMNSAWRVFYETEER  376 (681)
Q Consensus       301 ~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  376 (681)
                       +++.+..++.   .-|..          .+.+..-++.+....+. ++....|                          
T Consensus       249 -~vr~a~~~~~~~~~r~~~----------~d~ala~~~~l~~~~~~~p~~~~~~--------------------------  291 (822)
T PRK14574        249 -QVRMAVLPTRSETERFDI----------ADKALADYQNLLTRWGKDPEAQADY--------------------------  291 (822)
T ss_pred             -HHhhcccccccchhhHHH----------HHHHHHHHHHHHhhccCCCccchHH--------------------------
Confidence             1111111110   00000          01111111111110000 0000000                          


Q ss_pred             ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-----CCCChhHH
Q 047571          377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ-----FLPNVSII  451 (681)
Q Consensus       377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~  451 (681)
                       ..+.--.+.++...|++.++++.++.|...|.+....+-..+.++|...+++++|..+++.+....     ..++....
T Consensus       292 -~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~  370 (822)
T PRK14574        292 -QRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDA  370 (822)
T ss_pred             -HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHH
Confidence             011223445667778888888888888887766555577777888888888888888888776533     12233334


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCCCCcc------------------hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 047571          452 TSLMIMYSKCGVLDYSLKLFDEMEVRNVI------------------SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD  513 (681)
Q Consensus       452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  513 (681)
                      ..|..+|...+++++|..+++.+.+..+.                  .+..++..+...|++.+|++.++++...     
T Consensus       371 ~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-----  445 (822)
T PRK14574        371 DDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-----  445 (822)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            66777777777777777777776641110                  1222333344444455555544444332     


Q ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHH
Q 047571          514 SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAY  590 (681)
Q Consensus       514 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~  590 (681)
                                                    . +-+..+...+..++...|++.+|+..++....  |+ ..+....+.++
T Consensus       446 ------------------------------a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a  494 (822)
T PRK14574        446 ------------------------------A-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA  494 (822)
T ss_pred             ------------------------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence                                          1 23444555555555555555555555544333  22 33444455555


Q ss_pred             HcCCChHHHHHHHHHHHh
Q 047571          591 GYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~  608 (681)
                      ...+++++|..+.+.+.+
T Consensus       495 l~l~e~~~A~~~~~~l~~  512 (822)
T PRK14574        495 MALQEWHQMELLTDDVIS  512 (822)
T ss_pred             HhhhhHHHHHHHHHHHHh
Confidence            555666666666665555

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.75  E-value=1.4e-12  Score=131.63  Aligned_cols=592  Identities=11%  Similarity=0.036  Sum_probs=293.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571           79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF  158 (681)
Q Consensus        79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  158 (681)
                      ...+..+|++++|.+++.+..+.. +.....|..|...|-..|+.+++...+-...... +.|...|-.+.....+.|.+
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence            334444577777777777777664 4466677777777777777777766655444443 44556677777777777777


Q ss_pred             hHHHHhhhhcCCCCCccHHHH---HHHHHHcCCcChhhHHHHHHHHHHcCCCCChh----hHHHHHHHhhccCchhhhHH
Q 047571          159 EDAEKVFDESSSESVYPWNAL---LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY----TFSCVIKSFAGASALMQGLK  231 (681)
Q Consensus       159 ~~a~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~  231 (681)
                      +.|.-.|.+..+.++.-|..+   ..-|-+.|  +...|.+.|.++.+...+.|-.    +--.+++.+...++.+.|.+
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            777777776654433333332   23455556  7777777777766653222211    22233445555565566666


Q ss_pred             HHHHHHHh-CCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC-------------------------------------
Q 047571          232 THALLIKN-GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD-------------------------------------  273 (681)
Q Consensus       232 ~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------------------------  273 (681)
                      .++..... +-..+...++.++..+.+...++.|.........                                     
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            66655442 2233445556666666666666666555433221                                     


Q ss_pred             ------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 047571          274 ------------------------------RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGE  323 (681)
Q Consensus       274 ------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  323 (681)
                                                    .++..|.-+..++...|++.+|+.+|..+......-+...|-.+..++..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence                                          01223334444444455555555555444443333333444444444444


Q ss_pred             hhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCCh------------hhHHHHHHHHHhC
Q 047571          324 AWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNE------------ILWTALMSGYVSN  391 (681)
Q Consensus       324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~li~~~~~~  391 (681)
                      .|..+.|.+.+..++..  .+.+....-.|...+.+.|+.++|.+.+..+..+|.            ...-.....+...
T Consensus       462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            45555555555544443  222222333444444455555555555544433320            0111122233334


Q ss_pred             CChHHHHHHHHHHHHcC----------------------cCCCHHHHHHHHHHhhccCChhHHHHHHHH------HHHhC
Q 047571          392 GRLEQALRSIAWMQQEG----------------------FRPDVVTVATVIPVCSQLKALNHGKEIHAY------AVKNQ  443 (681)
Q Consensus       392 ~~~~~A~~~~~~m~~~g----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~  443 (681)
                      |+.++=+.+...|....                      ..-...+....+.+-.+.++.....+-...      ....|
T Consensus       540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~  619 (895)
T KOG2076|consen  540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG  619 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence            44333222222222110                      000111111111111111111111110000      00011


Q ss_pred             CCCCh--hHHHHHHHHHHhcCChHHHHHHHhhCCCC-----Ccc----hHHHHHHHHHhcCChhHHHHHHHHhHhC-CC-
Q 047571          444 FLPNV--SIITSLMIMYSKCGVLDYSLKLFDEMEVR-----NVI----SWTAMIDSCIENGRLDDALGVFRSMQLS-KH-  510 (681)
Q Consensus       444 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~-  510 (681)
                      +.-+.  ..+.-++..+++.+++++|..+...+..-     +..    .-...+.+.+..+++..|...++.|... +. 
T Consensus       620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~  699 (895)
T KOG2076|consen  620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY  699 (895)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence            11111  12334555666667777777766665531     111    1233445556667777777777666653 11 


Q ss_pred             -CCCH-HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHH
Q 047571          511 -RPDS-VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAI  586 (681)
Q Consensus       511 -~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l  586 (681)
                       .|.. ..|+..++...+.++-..-.+++..+......-++..+.........++.+..|...+-++..  ||.+..|.+
T Consensus       700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~  779 (895)
T KOG2076|consen  700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLC  779 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHH
Confidence             1111 123323333333333222223332222222222233333333444556677777776655544  665555543


Q ss_pred             HHH-HH----------cCCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---------
Q 047571          587 IEA-YG----------YNDLCQEALSLFDKMRNGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSRGY---------  645 (681)
Q Consensus       587 ~~~-~~----------~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------  645 (681)
                      +.. +.          ++-.+-+++..+++-.+.... -....+..+.++|-..|-+.-|..++++.....         
T Consensus       780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~  859 (895)
T KOG2076|consen  780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKE  859 (895)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccC
Confidence            322 21          122345566677666654311 256788899999999999999999999886531         


Q ss_pred             -CCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          646 -KIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       646 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                       ........--.|.-+|..+|+.+.|++++++
T Consensus       860 d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k  891 (895)
T KOG2076|consen  860 DNYDLRKEAAYNLHLIYKKSGNMQLARQILEK  891 (895)
T ss_pred             CcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence             0111122333466679999999999999875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=2.7e-14  Score=131.95  Aligned_cols=478  Identities=14%  Similarity=0.061  Sum_probs=295.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH-HHHHHHhhcCCChhHHHHhhhhc----CCCCCc----cHHHH
Q 047571          109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR-TKLVKMYTSCGSFEDAEKVFDES----SSESVY----PWNAL  179 (681)
Q Consensus       109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~----~~~~l  179 (681)
                      ....|.+-|.......+|+..|+-+.+..+.|+.-.. ..+.+.+.+.+.+.+|++.++-.    +.-+..    ..+.+
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni  282 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI  282 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence            3444555566677788899999988888877776543 34556677788888888877533    221111    13333


Q ss_pred             HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571          180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG  259 (681)
Q Consensus       180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  259 (681)
                      -..+.+.|  .++.|+..|+...+.  .|+..+-..|+-.+...|+.+...+.|+.|......+|..-|-       +  
T Consensus       283 gvtfiq~g--qy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~--  349 (840)
T KOG2003|consen  283 GVTFIQAG--QYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------K--  349 (840)
T ss_pred             CeeEEecc--cchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------C--
Confidence            34456666  777777777766554  4666544444444445667777777777776644333322110       0  


Q ss_pred             ChHHHHHHHhccCCCChhhHH-----HHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhhhhhhcccc
Q 047571          260 KIKLARRVFDETGDRDIVVWG-----SMIAGFAHNR--LRWEALDCARWMIREGIYPNSV-VLTILLPVIGEAWARKLGQ  331 (681)
Q Consensus       260 ~~~~a~~~~~~~~~~~~~~~~-----~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~  331 (681)
                                .-..|+....|     -++.-+-+..  +.++++-.-.++..--+.||-. -+...+..+......+.|.
T Consensus       350 ----------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~  419 (840)
T KOG2003|consen  350 ----------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI  419 (840)
T ss_pred             ----------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh
Confidence                      00011111111     1111111111  1122222222222222333321 1222222222222222211


Q ss_pred             hhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH-----HHHh-CCChHHHHHHHHHHH
Q 047571          332 EVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMS-----GYVS-NGRLEQALRSIAWMQ  405 (681)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~-----~~~~-~~~~~~A~~~~~~m~  405 (681)
                      ++-                -.-...+.+.|+++.|.++++-...+|..+-.+...     -|.+ -.++.+|.+.-+...
T Consensus       420 dle----------------i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al  483 (840)
T KOG2003|consen  420 DLE----------------INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL  483 (840)
T ss_pred             hhh----------------hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence            110                122345778999999999988887765443322222     2222 335666666655543


Q ss_pred             HcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchH
Q 047571          406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISW  482 (681)
Q Consensus       406 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~  482 (681)
                      ... +-+......--......|++++|.+.+++...+.-.-....||+ .-.+.+.|++++|++.|-++..   .+....
T Consensus       484 n~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl  561 (840)
T KOG2003|consen  484 NID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVL  561 (840)
T ss_pred             ccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence            321 11111111111223456899999999999887654333444442 2346678999999999977653   566777


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571          483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC  562 (681)
Q Consensus       483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  562 (681)
                      -.+...|....+..+|++++.+.... ++.|...+..+...|-+.|+..+|.+++-+--+. ++.+..+...|...|...
T Consensus       562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt  639 (840)
T KOG2003|consen  562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT  639 (840)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence            77888888899999999999877654 5667778889999999999999999887665443 466788888899999999


Q ss_pred             CCHHHHHHHhhhCCC--CChhhHHHHHHHHH-cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 047571          563 GFLECAKLVFDAVPV--KGSITWTAIIEAYG-YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF  630 (681)
Q Consensus       563 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~  630 (681)
                      .-++++..+|++..-  |+..-|..++..|. +.|++++|.++|+..... ++.|..+...|++.|...|.
T Consensus       640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            999999999987554  99999999888775 589999999999998875 67799999999999988885

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.72  E-value=4.5e-14  Score=141.25  Aligned_cols=253  Identities=13%  Similarity=0.003  Sum_probs=150.7

Q ss_pred             HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCC
Q 047571           93 VILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSES  172 (681)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  172 (681)
                      .+|-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.       .|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            34555666777777777777777777777777777 7777777666667777777777777777766554       566


Q ss_pred             CccHHHHHHHHHHcCCcChhh---HHHHHHHH----HHcCCCCChhhHHH--------------HHHHhhccCchhhhHH
Q 047571          173 VYPWNALLRGAVIAGKKRYRG---VLFNYMKM----RELGVQLNVYTFSC--------------VIKSFAGASALMQGLK  231 (681)
Q Consensus       173 ~~~~~~ll~~~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~~~~~--------------ll~~~~~~~~~~~a~~  231 (681)
                      ..+|..|+.+|.++|  |...   +...++..    ...|+.--..-+-.              ++......|-++.+.+
T Consensus        83 aDtyt~Ll~ayr~hG--Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHG--DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK  160 (1088)
T ss_pred             hhHHHHHHHHHHhcc--chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            667777777777777  5433   11111111    11122111111111              1111122233333333


Q ss_pred             HHHHHHHhCCCCCcHHHhHHHHHHHh-cCChHHHHHHHhccCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571          232 THALLIKNGFVDYLILRTSLIDMYFK-CGKIKLARRVFDETGD-RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP  309 (681)
Q Consensus       232 ~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  309 (681)
                      ++..+-.....- ...  .+++-... ...+++-..+.....+ ++..+|..++.+-...|+.+.|..++.+|++.|...
T Consensus       161 ll~~~Pvsa~~~-p~~--vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi  237 (1088)
T KOG4318|consen  161 LLAKVPVSAWNA-PFQ--VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI  237 (1088)
T ss_pred             HHhhCCcccccc-hHH--HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence            332221110000 000  01222222 2234444444444444 788888888888888999999999999999998888


Q ss_pred             ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCC
Q 047571          310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRD  362 (681)
Q Consensus       310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  362 (681)
                      +..-|..|+-+   .++...+..+++.+... |+.|+..|+...+..+..+|.
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence            88877777655   66667777777777777 888888888877777776555

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.70  E-value=3.8e-11  Score=116.71  Aligned_cols=442  Identities=11%  Similarity=0.045  Sum_probs=270.0

Q ss_pred             HhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--------CChhhHHHHHHHHHhcC
Q 047571          219 SFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--------RDIVVWGSMIAGFAHNR  290 (681)
Q Consensus       219 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~  290 (681)
                      ++++..-++.|.++++...+. ++.+..+|.+-...--.+|+.+...+++++...        -+...|-.=...|-..|
T Consensus       415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag  493 (913)
T KOG0495|consen  415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence            445555566666666655543 455555665555555556666666666654321        12333444444455555


Q ss_pred             ChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHH
Q 047571          291 LRWEALDCARWMIREGIYPN--SVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWR  368 (681)
Q Consensus       291 ~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  368 (681)
                      ..--+..+.......|+.-.  ..||......|.+.+.++-+..+|....+-  ++.+..+|...+..--..|..+....
T Consensus       494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~A  571 (913)
T KOG0495|consen  494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEA  571 (913)
T ss_pred             ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHH
Confidence            55555555555555554432  245666666666666666666666666654  55666666666655555666666666


Q ss_pred             HHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC
Q 047571          369 VFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL  445 (681)
Q Consensus       369 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  445 (681)
                      +|++....   ....|-.....+-..|+...|..++....+.... +...+...+.......+++.|..+|.....  ..
T Consensus       572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~s  648 (913)
T KOG0495|consen  572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--IS  648 (913)
T ss_pred             HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence            66665542   4455666666666677777777777776665322 445555566666666777777777766554  34


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHH
Q 047571          446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVI-SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARML  521 (681)
Q Consensus       446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll  521 (681)
                      |+..+|..-+....-.++.++|.+++++..+  |+.. .|-.+...+-+.++.+.|.+.|..-.+.  -|+.. .|..+.
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLa  726 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLA  726 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHH
Confidence            6666666666666666777777777766655  3332 4555556666666666666666544332  34333 333333


Q ss_pred             HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHH
Q 047571          522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQE  598 (681)
Q Consensus       522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~  598 (681)
                      ..=.+.|.+-.|+.+++...-.+ +-+...|-..|++-.+.|+.+.|..++.+..+  |+ ...|..-|....+.++-.+
T Consensus       727 kleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk  805 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK  805 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence            44445566777777777666554 33566677777777777777777777666655  33 4456666666666555444


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          599 ALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       599 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ....+++     +.-|++....+...|....+++.|.+.|++..+.   .|| ..+|.-+..-+.+.|.-++-.+++.+.
T Consensus       806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c  877 (913)
T KOG0495|consen  806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKC  877 (913)
T ss_pred             HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4444333     4567777777788888888899999999877653   444 567888888888889877777777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=2.7e-13  Score=125.49  Aligned_cols=455  Identities=12%  Similarity=0.087  Sum_probs=285.2

Q ss_pred             ChhhHHHHHHHHHHcCCCCChhhHH-HHHHHhhccCchhhhHHHHHHHHHhCCCCCc----HHHhHHHHHHHhcCChHHH
Q 047571          190 RYRGVLFNYMKMRELGVQLNVYTFS-CVIKSFAGASALMQGLKTHALLIKNGFVDYL----ILRTSLIDMYFKCGKIKLA  264 (681)
Q Consensus       190 ~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~a  264 (681)
                      ...+|+..|+-..+...-|+..... .+-+.+.+.+++..|.++++.....-...+.    .+.+.+--.+.+.|+++.|
T Consensus       216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da  295 (840)
T KOG2003|consen  216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA  295 (840)
T ss_pred             HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence            4566666666666665556554332 2334556677777777777666554222222    2333333456677788888


Q ss_pred             HHHHhccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccC
Q 047571          265 RRVFDETGD--RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNER  342 (681)
Q Consensus       265 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  342 (681)
                      +..|+.+.+  ||..+--.|+-++..-|+.++..+.|.+|...-..||..-|..                       . .
T Consensus       296 insfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~-----------------------~-~  351 (840)
T KOG2003|consen  296 INSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK-----------------------E-K  351 (840)
T ss_pred             HhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-----------------------C-c
Confidence            887776554  4544333333344456777777777777776544444333210                       0 1


Q ss_pred             CCCCchHHhH-----HHHHHHhcCC--HHHH----HHHHhhcCCCChh-------------hH--------HHHHHHHHh
Q 047571          343 YSEELFVRSS-----LVDMYCKCRD--MNSA----WRVFYETEERNEI-------------LW--------TALMSGYVS  390 (681)
Q Consensus       343 ~~~~~~~~~~-----l~~~~~~~~~--~~~a----~~~~~~~~~~~~~-------------~~--------~~li~~~~~  390 (681)
                      -.|+....+.     .+.-.-+.+.  .+++    .+++.-...++-.             .+        -.-...+.+
T Consensus       352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk  431 (840)
T KOG2003|consen  352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK  431 (840)
T ss_pred             CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence            1111111111     1111111111  1111    1111112222100             01        111235789


Q ss_pred             CCChHHHHHHHHHHHHcCcCCCHHHHH--HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571          391 NGRLEQALRSIAWMQQEGFRPDVVTVA--TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       391 ~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  468 (681)
                      +|+++.|+++++.+....-+.-...-+  .++..+.-..++..|.++-+...... +-+......-.+.-...|++++|.
T Consensus       432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~  510 (840)
T KOG2003|consen  432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAA  510 (840)
T ss_pred             ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHH
Confidence            999999999999887664332222222  22332333446667766665554322 112222222222334578999999


Q ss_pred             HHHhhCCCCCcchHHHHHH---HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          469 KLFDEMEVRNVISWTAMID---SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       469 ~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                      +.+++....|..+-.+|..   .+...|++++|++.|-++..- +..+...+..+.+.|....+..+|++++.+.... +
T Consensus       511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i  588 (840)
T KOG2003|consen  511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I  588 (840)
T ss_pred             HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence            9999999888776655544   367889999999999887643 3445667778888888889999999998876553 4


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571          546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL  622 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~  622 (681)
                      +.++.+...|...|-+.|+-..|.+..-+--+   .+..+..-|..-|....-+++++..|++..-  +.|+..-|..++
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi  666 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI  666 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence            56799999999999999999999988655444   4566666677778888899999999999876  799999999988


Q ss_pred             HHH-hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          623 SIC-NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       623 ~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      ..| .+.|++.+|.+++...-+  +++-+......|++.+...| ..+|.++-++
T Consensus       667 asc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg-l~d~key~~k  718 (840)
T KOG2003|consen  667 ASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG-LKDAKEYADK  718 (840)
T ss_pred             HHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc-chhHHHHHHH
Confidence            765 567999999999999877  56777889999999988877 3445554443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.66  E-value=8.8e-11  Score=118.86  Aligned_cols=567  Identities=13%  Similarity=0.067  Sum_probs=376.4

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhc---CCCCCccHHHHHH
Q 047571          105 VNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES---SSESVYPWNALLR  181 (681)
Q Consensus       105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~ll~  181 (681)
                      |.....-...+.+...|+.++|..++.+.++.. +.+...|..|...|-..|+.+++...+-..   .+.|..-|-.+-.
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad  215 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD  215 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            333444444445555699999999999999987 778889999999999999999999877543   3445556888888


Q ss_pred             HHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHh----HHHHHHHh
Q 047571          182 GAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRT----SLIDMYFK  257 (681)
Q Consensus       182 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~  257 (681)
                      -..+.|  ++.+|.-+|.+..+.. +++-..+--=...|-+.|+...|...|.++.....+.|..-.-    ..++.+..
T Consensus       216 ls~~~~--~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  216 LSEQLG--NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHHhcc--cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence            888888  9999999999988764 2333334445667889999999999999998876544433333    34566777


Q ss_pred             cCChHHHHHHHhccCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHH---------------------------c
Q 047571          258 CGKIKLARRVFDETGD-----RDIVVWGSMIAGFAHNRLRWEALDCARWMIR---------------------------E  305 (681)
Q Consensus       258 ~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------------~  305 (681)
                      .++-+.|.+.++....     -+...++.++..+.+...++.+......+..                           .
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~  372 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK  372 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence            7888999998887655     2456789999999999999999988887765                           1


Q ss_pred             CCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccC--CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC----Chh
Q 047571          306 GIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNER--YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER----NEI  379 (681)
Q Consensus       306 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~  379 (681)
                      ++.++... ..++-++...+..+....+....... .  ...+...|..+.++|...|++.+|.++|..+...    +..
T Consensus       373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~  450 (895)
T KOG2076|consen  373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF  450 (895)
T ss_pred             CCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence            12222222 23344455555556666666655555 3  4455667888889999999999999999888753    567


Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH-HHHHHHHHHhhccCChhHHHHHHHHH--------HHhCCCCChhH
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV-VTVATVIPVCSQLKALNHGKEIHAYA--------VKNQFLPNVSI  450 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~  450 (681)
                      .|-.+.++|...|..+.|.+.|+.....  .|+. ..--.|-..+.+.|+.++|.+.+..+        ...+..|....
T Consensus       451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri  528 (895)
T KOG2076|consen  451 VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI  528 (895)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence            8888888999999999999998888775  3443 33334555567788888888888873        33456677776


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCC----------------------------------------CC------------C
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEME----------------------------------------VR------------N  478 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~----------------------------------------~~------------~  478 (681)
                      .-.....+.+.|+.++-..+..+|.                                        .+            +
T Consensus       529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d  608 (895)
T KOG2076|consen  529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD  608 (895)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence            6666677777777665333221110                                        00            0


Q ss_pred             c-----------------chHHHHHHHHHhcCChhHHHHHHHHhHhCCC--CCCH---HHHHHHHHHhccccchHHHHHH
Q 047571          479 V-----------------ISWTAMIDSCIENGRLDDALGVFRSMQLSKH--RPDS---VAMARMLSVSGQLKALKLGKEI  536 (681)
Q Consensus       479 ~-----------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~~~~~~a~~~  536 (681)
                      .                 ..+.-++.++++.+++++|+.+...+.....  .++.   ..-...+.++...+++..|...
T Consensus       609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~  688 (895)
T KOG2076|consen  609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY  688 (895)
T ss_pred             hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            0                 0133456778888899999988888776542  2222   1223455667788889999888


Q ss_pred             HHHHHHc-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          537 HGQVLKK-DFAS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG--SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       537 ~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      ++.++.. +...   -...|+.......+.|+-..-.+++.....  ++  ...+-.........+.+.-|+..+-+...
T Consensus       689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~  768 (895)
T KOG2076|consen  689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR  768 (895)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence            8887754 2211   244555555556666655555555444333  22  22222222334456788888888877776


Q ss_pred             CCCCCC-HHHHHHHHHHHhcc-------C---CHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          609 GGFTPN-HFTFKVLLSICNQA-------G---FADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       609 ~g~~p~-~~~~~~l~~~~~~~-------g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .  .|+ +.+--.+..++...       .   ..-++..++.+..+.....--.+.+..++++|-..|-..-|..++++.
T Consensus       769 ~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv  846 (895)
T KOG2076|consen  769 Q--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV  846 (895)
T ss_pred             h--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4  454 33222222222211       1   123455555555443222223567888999999999999999999987


Q ss_pred             cCCC
Q 047571          678 SSLS  681 (681)
Q Consensus       678 ~~~~  681 (681)
                      ...|
T Consensus       847 L~~~  850 (895)
T KOG2076|consen  847 LEVS  850 (895)
T ss_pred             hCCC
Confidence            6543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.65  E-value=1.2e-10  Score=113.32  Aligned_cols=441  Identities=12%  Similarity=0.012  Sum_probs=332.1

Q ss_pred             hccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHH
Q 047571          221 AGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALD  297 (681)
Q Consensus       221 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  297 (681)
                      ....+.+.|.-++....+. ++.+..    |.-+|.+..-++.|.++++...+   .+...|-+-...=-.+|+.+...+
T Consensus       387 VelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k  461 (913)
T KOG0495|consen  387 VELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK  461 (913)
T ss_pred             HhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence            3344455566666666554 233333    34456666777888888876655   366777766666667888888887


Q ss_pred             HHHHH----HHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCC--CchHHhHHHHHHHhcCCHHHHHHHHh
Q 047571          298 CARWM----IREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSE--ELFVRSSLVDMYCKCRDMNSAWRVFY  371 (681)
Q Consensus       298 ~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~  371 (681)
                      ++++-    ...|+..+..-|..=...|...|..-....+...++.- |...  -..+|..-.+.|.+.+.++-|..+|.
T Consensus       462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya  540 (913)
T KOG0495|consen  462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYA  540 (913)
T ss_pred             HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence            77653    45688888888877777777777777777777666655 3332  24577888888889999999999888


Q ss_pred             hcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCh
Q 047571          372 ETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNV  448 (681)
Q Consensus       372 ~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  448 (681)
                      ...+-   +...|......--..|..+....+|++.... ++-....+.......-..|++..|..++..+.+.. +.+.
T Consensus       541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnse  618 (913)
T KOG0495|consen  541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSE  618 (913)
T ss_pred             HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcH
Confidence            77653   5567777777667788889999999998886 33334444445556777899999999999988876 4477


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhc
Q 047571          449 SIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSG  525 (681)
Q Consensus       449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~  525 (681)
                      ..+-+-+........+++|..+|.+...  +....|.--+..-.-.++.++|++++++..+.  -|+.. .|..+...+-
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE  696 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence            8888888899999999999999998875  66666766666666778999999999888874  56554 5666667778


Q ss_pred             cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHH
Q 047571          526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSL  602 (681)
Q Consensus       526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~  602 (681)
                      +.++++.|...|..-.+. .+..+..|-.+.+.-.+.|.+.+|..++++...   .|...|-..|+.-.+.|+.+.|..+
T Consensus       697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l  775 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL  775 (913)
T ss_pred             HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence            888888888888765543 344577888899999999999999999997766   3477899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      ..+..+. ++-+...|.-.|....+.++-......+.      +..-|+.....+...+....+++.|+++|++-..
T Consensus       776 makALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  776 MAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             HHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8888775 67788889888888888888666666665      3455667888999999999999999999998654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.65  E-value=3.2e-13  Score=135.30  Aligned_cols=252  Identities=8%  Similarity=-0.032  Sum_probs=181.8

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCCh
Q 047571          197 NYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDI  276 (681)
Q Consensus       197 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  276 (681)
                      .+-.+...|+.|+.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.       +|..
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a   83 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA   83 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence            4456778899999999999999999999999999 9999999888888999999999998888887765       6788


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCChhhHH--------------HHHHHHhhhhhhcccchhhh
Q 047571          277 VVWGSMIAGFAHNRLRWEALDCARWMIR-------EGIYPNSVVLT--------------ILLPVIGEAWARKLGQEVHA  335 (681)
Q Consensus       277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~--------------~ll~~~~~~~~~~~a~~~~~  335 (681)
                      .+|..|..+|...|+...-..+=+.|..       .|+..-..-+-              .++......|.++.+.+++.
T Consensus        84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~  163 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA  163 (1088)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999987652222222321       22211111111              12222333344555555554


Q ss_pred             hhhhccCCCCCchHHhHHHHHHHh-cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH
Q 047571          336 YVLKNERYSEELFVRSSLVDMYCK-CRDMNSAWRVFYETEE-RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV  413 (681)
Q Consensus       336 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~  413 (681)
                      .+.......|..+    +++-+.. ...+++-....+...+ +++.+|.+++++-..+|+.+.|..++.+|++.|++.+.
T Consensus       164 ~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  164 KVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             hCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            3332211222211    1222222 2334444444444444 78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571          414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV  463 (681)
Q Consensus       414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  463 (681)
                      +-|..++-+   .++...+..++.-|...|+.|+..|+...+..+.+.|.
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999888876   78888999999999999999999999988877776544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=2.3e-12  Score=128.74  Aligned_cols=278  Identities=11%  Similarity=0.004  Sum_probs=200.2

Q ss_pred             CCChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChHHH
Q 047571          391 NGRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIIT--SLMIMYSKCGVLDYS  467 (681)
Q Consensus       391 ~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a  467 (681)
                      .|+++.|.+.+....+..  +++.. |.....+..+.|+.+.|.+.+.++.+.  .|+...+.  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            588888887766654432  12222 323334447788888888888888764  34443332  335677888899999


Q ss_pred             HHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-------HHHHHHHHhccccchHHHHHHH
Q 047571          468 LKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-------AMARMLSVSGQLKALKLGKEIH  537 (681)
Q Consensus       468 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~  537 (681)
                      ...++++.+  | +......+...|.+.|++++|.+++..+.+.+..++..       +|..++.......+.+...+++
T Consensus       173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888888775  3 45567788888899999999999999998877553332       2333333333444455556666


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH
Q 047571          538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT  617 (681)
Q Consensus       538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  617 (681)
                      +.+-+. .+.++.....+...+...|+.++|...+++........--.++.+....++.+++++..++..+.. +-|+..
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l  330 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLL  330 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHH
Confidence            655432 345788888999999999999999999987766222222223445556799999999999999863 447778


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +..+...|.+.|++++|.+.|+...+   ..|+...+..+..++.+.|+.++|.+++++-
T Consensus       331 ~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        331 WSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88999999999999999999998875   4788888899999999999999999988764

>TIGR00540 hemY_coli hemY protein

Probab=99.57  E-value=3.6e-12  Score=128.10  Aligned_cols=284  Identities=11%  Similarity=-0.036  Sum_probs=205.2

Q ss_pred             HhCCChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571          389 VSNGRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS  467 (681)
Q Consensus       389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  467 (681)
                      ...|+++.|.+.+.+..+.  .|+... +-....+....|+.+.|.+++..+.+....+...........+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            4578999999988877664  354333 3344556778899999999999887654222223444457788889999999


Q ss_pred             HHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh---ccccchHHHHHHHHHHH
Q 047571          468 LKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS---GQLKALKLGKEIHGQVL  541 (681)
Q Consensus       468 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~  541 (681)
                      ...++.+.+  | +...+..+...+...|++++|.+.+..+.+.++.+.......-..++   ...+..+.+.+.+..+.
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999998876  4 55678888899999999999999999999987543333212111221   22233333334444444


Q ss_pred             HcCC---CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh---HHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571          542 KKDF---ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT---WTAIIEAYGYNDLCQEALSLFDKMRNGGFTP  613 (681)
Q Consensus       542 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  613 (681)
                      +...   +.++..+..++..+...|+.++|..++++...  |+...   ...........++.+.+++.+++..+.. +-
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~  331 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD  331 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence            4322   24788999999999999999999999998877  55332   1222223344678899999999988752 33


Q ss_pred             CH--HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          614 NH--FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       614 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      |+  ....++.+.|.+.|++++|.++|+.... ....|+...+..+..++.+.|+.++|.+++++
T Consensus       332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56  6778999999999999999999995433 25578888899999999999999999999886

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=4.8e-09  Score=98.51  Aligned_cols=262  Identities=12%  Similarity=0.129  Sum_probs=151.2

Q ss_pred             CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCCh-------hHHHHHHHHH---HhcCChHHHHHHHhhCCC--C-C
Q 047571          412 DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNV-------SIITSLMIMY---SKCGVLDYSLKLFDEMEV--R-N  478 (681)
Q Consensus       412 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~---~~~g~~~~a~~~~~~~~~--~-~  478 (681)
                      |-.++--.+......|+.+...++++.++.+- +|-.       .+|--+=-++   ....+++.+.++++...+  | .
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk  399 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK  399 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence            44444444444445555555555555555432 2211       1111111111   234566666666665554  2 2


Q ss_pred             cchHHHH----HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHH
Q 047571          479 VISWTAM----IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAE  554 (681)
Q Consensus       479 ~~~~~~l----i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  554 (681)
                      ..||.-+    ..--.++.++..|.+++...+  |.-|...+|...|..=.+.+.++.+..+++..++.+ +-+..+|..
T Consensus       400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k  476 (677)
T KOG1915|consen  400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK  476 (677)
T ss_pred             cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence            2333332    222345677777777777665  457777777777777777788888888888877764 234556666


Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC-CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV-KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN---  626 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~---  626 (681)
                      ....-...|+.+.|..+|+-+.+ |.    ...|.+.|.--...|.+++|..+|+++++.  .+....|-++..--.   
T Consensus       477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~  554 (677)
T KOG1915|consen  477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASAS  554 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccc
Confidence            77777777888888888876655 33    345666666667788888888888888874  344445544443222   


Q ss_pred             --ccC-----------CHHHHHHHHHHhhhcCCCCCChhHHHHH----HHHHhhcCCHHHHHHHHHhccC
Q 047571          627 --QAG-----------FADEACRIFNVMSRGYKIEALEEHYLIM----IDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       627 --~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                        +.|           ....|..+|++....+...-+..--..|    .+.=...|...+...+-.+||.
T Consensus       555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk  624 (677)
T KOG1915|consen  555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK  624 (677)
T ss_pred             ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence              333           4567888888764432222222223333    3333455766666666666663

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.51  E-value=2.1e-08  Score=97.94  Aligned_cols=555  Identities=10%  Similarity=0.033  Sum_probs=295.6

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQ-GIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV  149 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  149 (681)
                      =|+.|..-++.+..+|+.......|++.+.. .+......|...+......+-++-+..+++...+.    ++..-+-.|
T Consensus       101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi  176 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI  176 (835)
T ss_pred             CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence            3455666677777788888888888877554 33334556777777777777787888888887744    334456677


Q ss_pred             HHhhcCCChhHHHHhhhhcCCCCC----------ccHHHHHHHHHHcCCcChhh---HHHHHHHHHHcCCCCChh--hHH
Q 047571          150 KMYTSCGSFEDAEKVFDESSSESV----------YPWNALLRGAVIAGKKRYRG---VLFNYMKMRELGVQLNVY--TFS  214 (681)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~ll~~~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~--~~~  214 (681)
                      ..++..+++++|.+.+..+...+.          ..|.-+-.-.+++.  +.-.   ...+++.+.  +.-+|..  .|+
T Consensus       177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p--~~~~slnvdaiiR~gi--~rftDq~g~Lw~  252 (835)
T KOG2047|consen  177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP--DKVQSLNVDAIIRGGI--RRFTDQLGFLWC  252 (835)
T ss_pred             HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc--chhcccCHHHHHHhhc--ccCcHHHHHHHH
Confidence            888888999998888877653221          22544444444433  2111   112222211  1223333  456


Q ss_pred             HHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHH-h--cc-CCCChhhHHHHHHHHHhcC
Q 047571          215 CVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVF-D--ET-GDRDIVVWGSMIAGFAHNR  290 (681)
Q Consensus       215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~-~--~~-~~~~~~~~~~li~~~~~~~  290 (681)
                      .|.+.|.+.|.++.|..++++....-  .++.-++.+.+.|+....-.-+.++= .  +. .+.+..             
T Consensus       253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~-------------  317 (835)
T KOG2047|consen  253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV-------------  317 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh-------------
Confidence            66666666666666666666554432  22333344444444322111111100 0  00 000111             


Q ss_pred             ChHHHHHHHHHHHHcCC-----------CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCC------chHHhHH
Q 047571          291 LRWEALDCARWMIREGI-----------YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEE------LFVRSSL  353 (681)
Q Consensus       291 ~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l  353 (681)
                      +++-.+.-|+.+...+.           .-+..+|..-..  ...|+..+....+..+++.  +.|.      ...|..+
T Consensus       318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~f  393 (835)
T KOG2047|consen  318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEF  393 (835)
T ss_pred             hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHH
Confidence            11112222222222110           011122221111  1122333333344444433  1111      2355667


Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc
Q 047571          354 VDMYCKCRDMNSAWRVFYETEERNE-------ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL  426 (681)
Q Consensus       354 ~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  426 (681)
                      ...|-..|+++.|..+|+...+-+-       .+|......=.+..+++.|+++++....   .|....    + .+...
T Consensus       394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~  465 (835)
T KOG2047|consen  394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDN  465 (835)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcC
Confidence            7777777777777777777665322       2344444444455556666655444433   233211    1 11111


Q ss_pred             CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHH---HHHHhcCChhHHHHHHH
Q 047571          427 KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMI---DSCIENGRLDDALGVFR  503 (681)
Q Consensus       427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~  503 (681)
                      +..-++ .         +--+..+|..+++.-...|-++....+++.+.+-.+.|=..++   .-+-.+.-++++.++|+
T Consensus       466 ~~pvQ~-r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  466 SEPVQA-R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             CCcHHH-H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            111110 0         1123345555566666677788888888877763332222222   12334555778888887


Q ss_pred             HhHhCCCCCCHH-HHHHHHHHhcc---ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hcCCHHHHHHHhhhC
Q 047571          504 SMQLSKHRPDSV-AMARMLSVSGQ---LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG----MCGFLECAKLVFDAV  575 (681)
Q Consensus       504 ~m~~~g~~p~~~-~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~  575 (681)
                      +-+..--.|+.. .|+..+..+.+   ....+.|+.+|++.++ +.+|  .....+.-+|+    +.|....|+.+++++
T Consensus       536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp--~~aKtiyLlYA~lEEe~GLar~amsiyera  612 (835)
T KOG2047|consen  536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP--EHAKTIYLLYAKLEEEHGLARHAMSIYERA  612 (835)
T ss_pred             cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            766554445543 44444444332   2367888888888887 4333  33333333343    347778888888876


Q ss_pred             CC---C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 047571          576 PV---K--GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK---VLLSICNQAGFADEACRIFNVMSRGYKI  647 (681)
Q Consensus       576 ~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~  647 (681)
                      ..   +  -...||..|.--...=-+.....+|++..+.  -|+...-.   -..+.=.+.|..++|..++-...+-...
T Consensus       613 t~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP  690 (835)
T KOG2047|consen  613 TSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP  690 (835)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence            65   1  1457888876555443445567788888884  56554433   3334457789999999999887775455


Q ss_pred             CCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571          648 EALEEHYLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       648 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      ..+...|.+.=.-=.+.|+-+.-++++.
T Consensus       691 r~~~~fW~twk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  691 RVTTEFWDTWKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5567888888777789999666665553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=6.7e-10  Score=103.95  Aligned_cols=287  Identities=12%  Similarity=0.106  Sum_probs=165.1

Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCC
Q 047571          386 SGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL--PNVSIITSLMIMYSKCGV  463 (681)
Q Consensus       386 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~  463 (681)
                      .++....+.+++..-.+.....|+.-+...-+....+.-...++++|..+|+++.++..-  .|..+|+.++-.-....+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk  314 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence            344444566666666666666665544444444444455566777777777777765321  244555554433222222


Q ss_pred             hHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571          464 LDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK  543 (681)
Q Consensus       464 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  543 (681)
                      +.---...-.+.+-.+.|..++.+-|.-.++.++|...|++..+.+ +-....+..+..-|....+...|.+.++..++-
T Consensus       315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi  393 (559)
T KOG1155|consen  315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI  393 (559)
T ss_pred             HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence            2211122222333344555566666666667777777777766643 222234444555566666777777777766654


Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571          544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV  620 (681)
Q Consensus       544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  620 (681)
                      + +-|-..|-.|.++|.-.+...-|.-.|++...   .|...|.+|...|.+.++.++|++.|.+....| ..+...+..
T Consensus       394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~  471 (559)
T KOG1155|consen  394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR  471 (559)
T ss_pred             C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence            3 33455666677777777777777777776655   456677777777777777777777777777655 445666777


Q ss_pred             HHHHHhccCCHHHHHHHHHHhhhcC---C-CCC-ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571          621 LLSICNQAGFADEACRIFNVMSRGY---K-IEA-LEEHYLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       621 l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      |...+.+.++.++|...++...+..   | ..| ....-.-|..-+.+.+++++|-.+..
T Consensus       472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~  531 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT  531 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            7777777777777777776655421   1 222 12222223444556666666655443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.50  E-value=1.2e-13  Score=131.99  Aligned_cols=254  Identities=15%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHH-HHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571          385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATV-IPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV  463 (681)
Q Consensus       385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  463 (681)
                      ...+.+.|++++|+++++.......+|+...|..+ ...+...++.+.|...++.+...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            33444555555555555433332212333333322 22333445555555555555544321 33344444444 45555


Q ss_pred             hHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571          464 LDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       464 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                      +++|.++++...+  ++...+..++..+.+.++++++.++++++....                                
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------------------------  140 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP--------------------------------  140 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------------------------------
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc--------------------------------
Confidence            5555555544322  333444444555555555555555555544321                                


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHH
Q 047571          542 KKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTF  618 (681)
Q Consensus       542 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  618 (681)
                        ..+.++..+..+...+.+.|+.++|.+.++++..  |+ ....+.++..+...|+.+++.++++...+.. +.|+..+
T Consensus       141 --~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~  217 (280)
T PF13429_consen  141 --AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW  217 (280)
T ss_dssp             -----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred             --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence              1123344444444555555555555555554444  33 4456666666777777777666666666542 4455566


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          619 KVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       619 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ..+..++...|+.++|+.++++..+.  .+.|+.....+.+++...|+.++|.++..+.
T Consensus       218 ~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  218 DALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------------
T ss_pred             HHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            66777777777777777777766553  2224566667777777777777777766554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.49  E-value=6.4e-14  Score=133.74  Aligned_cols=218  Identities=16%  Similarity=0.198  Sum_probs=97.3

Q ss_pred             HHHHHHHhcCChHHHHHHHhhC-CC---C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571          453 SLMIMYSKCGVLDYSLKLFDEM-EV---R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL  527 (681)
Q Consensus       453 ~l~~~~~~~g~~~~a~~~~~~~-~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  527 (681)
                      .+...+.+.|++++|.+++++. ..   | |...|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            4466667777777777777432 22   2 3344555555666677888888888888765422 44455555555 577


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHHHHHHHHHcCCChHHHHHH
Q 047571          528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSITWTAIIEAYGYNDLCQEALSL  602 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~  602 (681)
                      +++++|..++....+..  +++..+..++..+...|+++++..+++.+..     .+...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            78888887777665543  4566777788889999999999999887543     4567788889999999999999999


Q ss_pred             HHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          603 FDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       603 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +++..+.  .| |......+++.+...|+.+++.++++...+..  +.++..+..+..+|...|+.++|..++++..
T Consensus       169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccc
Confidence            9999995  55 68889999999999999999999999888752  4456788999999999999999999998753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.47  E-value=7.4e-11  Score=117.95  Aligned_cols=289  Identities=11%  Similarity=0.008  Sum_probs=194.9

Q ss_pred             HHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHh--HHHHHHHhcC
Q 047571          182 GAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRT--SLIDMYFKCG  259 (681)
Q Consensus       182 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~~  259 (681)
                      |......+++++|.+.+....+.+-.| ...|.....+..+.|+.+.|.+.+..+.+.  .|+.....  .....+...|
T Consensus        91 gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g  167 (398)
T PRK10747         91 ALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARN  167 (398)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCC
Confidence            333333337777776666544432111 222333344557888888888888888764  34443222  3356778888


Q ss_pred             ChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhh
Q 047571          260 KIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAY  336 (681)
Q Consensus       260 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  336 (681)
                      +++.|...++++.+   .+...+..+...|.+.|++++|.+++..+.+.+..++. ....+-.                 
T Consensus       168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~-----------------  229 (398)
T PRK10747        168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ-----------------  229 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------
Confidence            89988888887765   25677888888888899999999999888887654322 1111100                 


Q ss_pred             hhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH
Q 047571          337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV  413 (681)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~  413 (681)
                                 ..|..++.......+.+...++++.+..   .++.....+...+...|+.++|.+++++..+.  .||.
T Consensus       230 -----------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~  296 (398)
T PRK10747        230 -----------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE  296 (398)
T ss_pred             -----------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence                       0111222323333445556666666543   36677788888889999999999999888774  4444


Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHh
Q 047571          414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIE  491 (681)
Q Consensus       414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~  491 (681)
                      ..  .++.+....++.+++.+..+...+.. +-|......+...+.+.+++++|.+.|+...+  |+...|..+...+.+
T Consensus       297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~  373 (398)
T PRK10747        297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR  373 (398)
T ss_pred             HH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            22  23344445688888888888887654 55666778888899999999999999988875  777788888899999


Q ss_pred             cCChhHHHHHHHHhHh
Q 047571          492 NGRLDDALGVFRSMQL  507 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~  507 (681)
                      .|+.++|.++|++-..
T Consensus       374 ~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        374 LHKPEEAAAMRRDGLM  389 (398)
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            9999999999987754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=4.8e-09  Score=98.55  Aligned_cols=411  Identities=13%  Similarity=0.066  Sum_probs=262.5

Q ss_pred             cCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhh
Q 047571          258 CGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVH  334 (681)
Q Consensus       258 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  334 (681)
                      .+++..|..+|++...   +++..|--.+..=.++..+..|..++++.+..=...|.. |-.-+..-...|+...|.++|
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence            3444555555555443   344555555555556666666666666555432222211 112222223345556666666


Q ss_pred             hhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC
Q 047571          335 AYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE--ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD  412 (681)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  412 (681)
                      +.-+   ...|+...|.+.|+.=.+-+.++.|..+++...  .|++..|-...+-=.+.|+...|..+|....+.  --|
T Consensus       165 erW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~  239 (677)
T KOG1915|consen  165 ERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD  239 (677)
T ss_pred             HHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence            5544   346777777777777777777777877777643  467777777777777788888888887776653  112


Q ss_pred             HHHHHHHHHH----hhccCChhHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHH--------hhCCCC-
Q 047571          413 VVTVATVIPV----CSQLKALNHGKEIHAYAVKNQFLPN--VSIITSLMIMYSKCGVLDYSLKLF--------DEMEVR-  477 (681)
Q Consensus       413 ~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~--------~~~~~~-  477 (681)
                      ...-..+..+    -.+++.++.|.-+|+-..+.- +.+  ...|..+..---+-|+....++..        +.+... 
T Consensus       240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n  318 (677)
T KOG1915|consen  240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN  318 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence            2222233333    344567788888888777652 222  334444444434455544433332        222222 


Q ss_pred             --CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-------HHHHHHHHh---ccccchHHHHHHHHHHHHcCC
Q 047571          478 --NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-------AMARMLSVS---GQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       478 --~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~  545 (681)
                        |..+|-..+..-...|+.+...++|++.+.. ++|-..       .|.-+=-+|   ....+.+.+.+++...++. +
T Consensus       319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I  396 (677)
T KOG1915|consen  319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I  396 (677)
T ss_pred             CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence              4556777777777789999999999998875 455322       121121122   2457888899999888872 3


Q ss_pred             CCChhHHHHHHHHH----HhcCCHHHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047571          546 ASVPFVAAENIKMY----GMCGFLECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK  619 (681)
Q Consensus       546 ~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  619 (681)
                      +....++..+--+|    .++.++..|.+++.....  |...++...|..-.+.+++|....+|++..+-+ |-|..+|.
T Consensus       397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~  475 (677)
T KOG1915|consen  397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS  475 (677)
T ss_pred             CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence            33455555544444    466889999999987766  777788888888888999999999999999853 34778888


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          620 VLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .....=...|+.++|..+|+.......+.--.-.|.+.|+-=...|.++.|+.+++++.
T Consensus       476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            88888888899999999999887753333334567777777788899999999988865

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.2e-09  Score=102.24  Aligned_cols=192  Identities=14%  Similarity=0.041  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571          450 IITSLMIMYSKCGVLDYSLKLFDEMEVRN---VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ  526 (681)
Q Consensus       450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  526 (681)
                      |+.++.+.|+-.++.++|...|+...+-|   ...|+.+.+-|...++...|++-|+..++-. +.|...|-.+..+|..
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI  410 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH
Confidence            34444455555555555555555554422   2344555555555555555555555555432 3344455555555555


Q ss_pred             ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CC--hhhHHHHHHHHHcCCChHHHHHHH
Q 047571          527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-KG--SITWTAIIEAYGYNDLCQEALSLF  603 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~  603 (681)
                      .+...=|.-+|++..+.. +.|+.+|.+|.++|.+.++.++|...|..... .|  ...+..|...|-+.++.++|...|
T Consensus       411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence            555555555555555432 33566666666666666666666666665555 22  356667777777777777777776


Q ss_pred             HHHHh----CCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          604 DKMRN----GGF-TP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       604 ~~m~~----~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ++-++    .|. .| .......|..-+.+.+++++|..+......
T Consensus       490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            66544    221 22 122233355556677777777766654443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.46  E-value=1.9e-10  Score=105.97  Aligned_cols=280  Identities=12%  Similarity=0.062  Sum_probs=215.5

Q ss_pred             hCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047571          390 SNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLK  469 (681)
Q Consensus       390 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  469 (681)
                      ..|++.+|.+.+.+-.+.+-.| ...|..-..+....|+.+.+..++.++.+.--.++...+-.........|+.+.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3688888888888877765443 334555566777888888888888888876446677777778888888888888888


Q ss_pred             HHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-------HHHHHHHHhccccchHHHHHHHHH
Q 047571          470 LFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-------AMARMLSVSGQLKALKLGKEIHGQ  539 (681)
Q Consensus       470 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~  539 (681)
                      -++++.+   .++........+|.+.|++.+...++..|.+.|+-.+..       ++..+++-+...+..+.-...|+.
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            7776654   466778888899999999999999999999988766644       577777777777766666666665


Q ss_pred             HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH
Q 047571          540 VLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT  617 (681)
Q Consensus       540 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  617 (681)
                      .-+. .+.++.+...++.-+..+|+.++|.++.++..+.  |..  -.....+.+-++.+.-++..++-.+. .+.++..
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L  330 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL  330 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence            5443 4567888889999999999999999998877662  222  22233455677888888887776664 2446688


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +.+|...|.+.+.|.+|.+.|+...   ...|+..+|+.+.++|.+.|+.++|.++.++-
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            8999999999999999999999544   66889999999999999999999999887753

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=4.5e-11  Score=117.13  Aligned_cols=269  Identities=14%  Similarity=0.069  Sum_probs=141.7

Q ss_pred             hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHH
Q 047571          394 LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQF--LPNVSIITSLMIMYSKCGVLDYSLKLF  471 (681)
Q Consensus       394 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~  471 (681)
                      +.+|+..|..+... +.-+......+-.+|...+++++|.++|+.+.+...  .-+..+|...+.-+-+.-...---+-+
T Consensus       335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            45555555553332 222224444455556666666666666666554321  123444554443332211111111111


Q ss_pred             hhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChh
Q 047571          472 DEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPF  550 (681)
Q Consensus       472 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  550 (681)
                      -.+....+.+|.++..+|.-+++.+.|++.|++..+.  .| ...+|..+..-+.....+|.|...|+..+.    .++.
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~r  487 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPR  487 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCch
Confidence            1111234456666666666666666666666666553  33 334444444444555556666666655443    3344


Q ss_pred             HHHH---HHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571          551 VAAE---NIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI  624 (681)
Q Consensus       551 ~~~~---l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  624 (681)
                      .|++   +...|.+.++++.|+-.|+++.+   .+.+....+...+.+.|+.|+|++++++..... +-|+.+-..-+..
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~i  566 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASI  566 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHH
Confidence            4443   34556666666666666666665   234455555566666666777777777666642 3355555555666


Q ss_pred             HhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 047571          625 CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHR  672 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  672 (681)
                      +...+++++|++.++++++-  ++-+...+..+++.|.+.|+.+.|+.
T Consensus       567 l~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~  612 (638)
T KOG1126|consen  567 LFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALL  612 (638)
T ss_pred             HHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHH
Confidence            66666677777777666542  22235566666666766666666654

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=7.7e-10  Score=111.35  Aligned_cols=295  Identities=10%  Similarity=-0.024  Sum_probs=198.3

Q ss_pred             HHHHHHHcCCcChhhHHHHHHHHHHcCCCCChh-hHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHh
Q 047571          179 LLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY-TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFK  257 (681)
Q Consensus       179 ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~  257 (681)
                      +..|......++++.|.+.+.+..+.  .|+.. .+-....+....|+.+.|.+.+....+....+...+.......+..
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            34455554445888888888775554  34433 3344456677889999999999887765422222344445777888


Q ss_pred             cCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhh
Q 047571          258 CGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVH  334 (681)
Q Consensus       258 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  334 (681)
                      .|+++.|...++.+.+  | +...+..+...+...|++++|.+++..+.+.++.++......-..+.             
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~-------------  232 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE-------------  232 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------------
Confidence            9999999988888765  2 66678888889999999999999999998876543222111111111             


Q ss_pred             hhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCC
Q 047571          335 AYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRP  411 (681)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  411 (681)
                                      ..++..-......+.....++...+   .+...+..+...+...|+.++|.+++++..+..  |
T Consensus       233 ----------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--p  294 (409)
T TIGR00540       233 ----------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--G  294 (409)
T ss_pred             ----------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--C
Confidence                            1111111222234444555555543   367778888888999999999999999888763  4


Q ss_pred             CHHH--H-HHHHHHhhccCChhHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHh--hCC--CCCcchH
Q 047571          412 DVVT--V-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPNV--SIITSLMIMYSKCGVLDYSLKLFD--EME--VRNVISW  482 (681)
Q Consensus       412 ~~~~--~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~--~~~~~~~  482 (681)
                      |...  + ..........++.+.+.+.++...+.. +-+.  ....++...+.+.|++++|.+.|+  ...  .|+...+
T Consensus       295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~  373 (409)
T TIGR00540       295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL  373 (409)
T ss_pred             CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence            4432  1 111122234577788888887777653 3344  566688899999999999999999  342  4888888


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhHh
Q 047571          483 TAMIDSCIENGRLDDALGVFRSMQL  507 (681)
Q Consensus       483 ~~li~~~~~~~~~~~A~~~~~~m~~  507 (681)
                      ..+...+.+.|+.++|.++|++...
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8999999999999999999988643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.39  E-value=4.1e-09  Score=97.32  Aligned_cols=299  Identities=11%  Similarity=0.032  Sum_probs=213.3

Q ss_pred             HHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhc
Q 047571          179 LLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKC  258 (681)
Q Consensus       179 ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~  258 (681)
                      +..+..+...|++.+|.+...+-.+.+-.| ...|.....+.-..|+.+.+-.++.+..+.--.++..++-+........
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            444555555558888888888866666443 3356666777788899999999999888764456667777788888999


Q ss_pred             CChHHHHHHHhccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhh
Q 047571          259 GKIKLARRVFDETG---DRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHA  335 (681)
Q Consensus       259 ~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  335 (681)
                      |+.+.|..-+++..   ..+.........+|.+.|++.....++..|.+.|.--|...-..                   
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-------------------  227 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-------------------  227 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-------------------
Confidence            99999988776654   45788899999999999999999999999999887655432110                   


Q ss_pred             hhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC
Q 047571          336 YVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD  412 (681)
Q Consensus       336 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  412 (681)
                                ...+|..+++-....+..+.-...|++....   ++..-..++.-+.+.|+.++|.++..+-.+.+..|+
T Consensus       228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~  297 (400)
T COG3071         228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR  297 (400)
T ss_pred             ----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence                      1123344555555555555555666666542   566677778888888999999998888888776666


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHH
Q 047571          413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCI  490 (681)
Q Consensus       413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~  490 (681)
                      ..    ..-.+.+.++...-.+..+.-.+.. +.++..+..|...|.+.+.+.+|...|+...+  |+..+|+.+..++.
T Consensus       298 L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~  372 (400)
T COG3071         298 LC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD  372 (400)
T ss_pred             HH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            22    2234555666666666655544432 33446777888888888888888888886654  77788888888888


Q ss_pred             hcCChhHHHHHHHHhHhCCCCC
Q 047571          491 ENGRLDDALGVFRSMQLSKHRP  512 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p  512 (681)
                      +.|+..+|.+..++....-.+|
T Consensus       373 ~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         373 QLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             HcCChHHHHHHHHHHHHHhcCC
Confidence            8888888888887766443333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1.2e-08  Score=96.48  Aligned_cols=213  Identities=15%  Similarity=0.074  Sum_probs=154.4

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 047571          425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGV  501 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~  501 (681)
                      -.|+.-.+..-|+..+.....++. .|-.+..+|....+.++.++.|+...+   .|+.+|..-...+.-.+++++|..-
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            356777788888887776533322 266667778888888888888887765   3556777777777777888888888


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571          502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG  579 (681)
Q Consensus       502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~  579 (681)
                      |++.++.. +-+...|..+-.+.-+.+.++.+...|++.+++ ++..+.+|+.....+...++++.|.+.|+...+  |.
T Consensus       417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            88887742 223445556656666778888888888888765 566688888888888888999988888887665  32


Q ss_pred             -------h--hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          580 -------S--ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       580 -------~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                             .  ..-..++..- -.+++..|+.++++..+.  .| ....|.+|...-.+.|+.++|+++|+....
T Consensus       495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                   1  1112222222 348899999999999884  45 567889999999999999999999986543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.35  E-value=1e-07  Score=93.27  Aligned_cols=291  Identities=16%  Similarity=0.218  Sum_probs=184.7

Q ss_pred             hHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHHHHHHHHHhC----------------C------ChHHHHHHHHH
Q 047571          348 FVRSSLVDMYCKCRDMNSAWRVFYETEER--NEILWTALMSGYVSN----------------G------RLEQALRSIAW  403 (681)
Q Consensus       348 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~----------------~------~~~~A~~~~~~  403 (681)
                      ..|++|.+-|.+.|.++.|.++|++....  .+.-|..+.++|..-                |      +++-.+..|+.
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~  328 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES  328 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence            46788888888888888888888876653  233333333333321                1      12333444444


Q ss_pred             HHHcCc-----------CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCChHH
Q 047571          404 MQQEGF-----------RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLP------NVSIITSLMIMYSKCGVLDY  466 (681)
Q Consensus       404 m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~  466 (681)
                      +...+.           +-+..++..-  .-...|+..+....+.++++. +.|      -...|..+...|...|+++.
T Consensus       329 lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  329 LMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence            443321           0111112111  223345667777777777763 222      22457788899999999999


Q ss_pred             HHHHHhhCCCCCcch-------HHHHHHHHHhcCChhHHHHHHHHhHhCCC----------CC-------CHHHHHHHHH
Q 047571          467 SLKLFDEMEVRNVIS-------WTAMIDSCIENGRLDDALGVFRSMQLSKH----------RP-------DSVAMARMLS  522 (681)
Q Consensus       467 a~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A~~~~~~m~~~g~----------~p-------~~~~~~~ll~  522 (681)
                      |..+|++..+-+-.+       |..-...=.++.+++.|+++.++....--          .|       +...|...++
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            999999998754443       44444444567889999998887754211          11       1122344444


Q ss_pred             HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CC-hhhHHHHHHHHHc---CC
Q 047571          523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KG-SITWTAIIEAYGY---ND  594 (681)
Q Consensus       523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~l~~~~~~---~~  594 (681)
                      .-...|-++....+++.++...+. +|.+.......+....-++++.+++++-..    |+ ...|+..+.-+.+   ..
T Consensus       486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~  564 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT  564 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence            444557788888899999887653 555555566667777889999999998766    55 4578887776654   34


Q ss_pred             ChHHHHHHHHHHHhCCCCCCH-HHHHHH-HHHHhccCCHHHHHHHHHHhhh
Q 047571          595 LCQEALSLFDKMRNGGFTPNH-FTFKVL-LSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p~~-~~~~~l-~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..+.|..+|++.++ |++|.. .|.-.+ ...=.+.|....|..++++...
T Consensus       565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            78999999999999 788843 333222 2223455888888888887654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=4e-10  Score=110.59  Aligned_cols=192  Identities=15%  Similarity=0.076  Sum_probs=118.7

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHH---HH
Q 047571          445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRN---VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA---MA  518 (681)
Q Consensus       445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~  518 (681)
                      +..+.+|.++.++|.-.++.+.|++.|++..+-|   ..+|+.+..-+.....+|.|...|+....    .|...   |-
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY  493 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY  493 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence            3344555555555555555555555555555422   23444444445555555555555555532    22222   22


Q ss_pred             HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCC
Q 047571          519 RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDL  595 (681)
Q Consensus       519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~  595 (681)
                      .+.-.|.+.++++.|.-.|+++.+.+ +.+..+...+...+.+.|+.|+|..+++++..   .|+..--..+..+...++
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR  572 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence            33344555555566655555555433 22344556666677777777777777776655   344444455666777899


Q ss_pred             hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          596 CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       596 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +++|+..++++++  +.| +...+..+...|.+.|+.+.|+.-|.-+.+
T Consensus       573 ~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  573 YVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             hHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            9999999999998  455 567788888899999999999998887754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.4e-08  Score=97.88  Aligned_cols=453  Identities=13%  Similarity=0.031  Sum_probs=298.1

Q ss_pred             HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHH
Q 047571          176 WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMY  255 (681)
Q Consensus       176 ~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  255 (681)
                      +..+++-+....  .+..|..+-++....+-.|+  .--.+...+.-.|+.+.|..+...-.-.  ..|..+......++
T Consensus        19 ~~~~~r~~l~q~--~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l   92 (611)
T KOG1173|consen   19 YRRLVRDALMQH--RYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL   92 (611)
T ss_pred             HHHHHHHHHHHH--hhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence            556666555555  77777777777666554444  4445677777778888887776544222  34566666777888


Q ss_pred             HhcCChHHHHHHHhccCC---------CC--------hhh----HHHHHH-------HHHhcCChHHHHHHHHHHHHcCC
Q 047571          256 FKCGKIKLARRVFDETGD---------RD--------IVV----WGSMIA-------GFAHNRLRWEALDCARWMIREGI  307 (681)
Q Consensus       256 ~~~~~~~~a~~~~~~~~~---------~~--------~~~----~~~li~-------~~~~~~~~~~a~~~~~~m~~~g~  307 (681)
                      .+..++++|..++.....         .|        ..-    -+.-..       .|....+.++|.+.|.+..    
T Consensus        93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al----  168 (611)
T KOG1173|consen   93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL----  168 (611)
T ss_pred             HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH----
Confidence            888889999888874321         01        000    011111       2333334455555555443    


Q ss_pred             CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc----C---------
Q 047571          308 YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET----E---------  374 (681)
Q Consensus       308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~---------  374 (681)
                      ..|...|..+......  ..-.+.+.++.+... .+..            ....+.+.-..+|+..    .         
T Consensus       169 ~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l-~~a~------------~~~ed~e~l~~lyel~~~k~~n~~~~~r~~  233 (611)
T KOG1173|consen  169 LADAKCFEAFEKLVSA--HMLTAQEEFELLESL-DLAM------------LTKEDVERLEILYELKLCKNRNEESLTRNE  233 (611)
T ss_pred             hcchhhHHHHHHHHHH--HhcchhHHHHHHhcc-cHHh------------hhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence            3344444433322211  111111111111111 0000            0001111111222211    0         


Q ss_pred             -------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCC
Q 047571          375 -------ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPN  447 (681)
Q Consensus       375 -------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  447 (681)
                             +.++.....-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=..+++.- +..
T Consensus       234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~  311 (611)
T KOG1173|consen  234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSK  311 (611)
T ss_pred             hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCC
Confidence                   014445555666777889999999999998876 34555566666778888888887777777777653 667


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 047571          448 VSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV---ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS  524 (681)
Q Consensus       448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  524 (681)
                      ..+|-++..-|.-.|+..+|++.|.+...-|.   ..|-.+..+|.-.|..|+|+.-|...-+. ++-....+-.+.--|
T Consensus       312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey  390 (611)
T KOG1173|consen  312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEY  390 (611)
T ss_pred             CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHH
Confidence            77888898888889999999999998776443   47888999999999999999988877653 122222333444567


Q ss_pred             ccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC------C----ChhhHHHHHHHHHcCC
Q 047571          525 GQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV------K----GSITWTAIIEAYGYND  594 (681)
Q Consensus       525 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~----~~~~~~~l~~~~~~~~  594 (681)
                      .+.++.+.|.++|.+..... +.||.+.+.+.-..-..+.+.+|..+|+....      +    -..+++.|..+|.+.+
T Consensus       391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~  469 (611)
T KOG1173|consen  391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN  469 (611)
T ss_pred             HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence            78899999999999887643 44688888888888889999999999987664      1    2456889999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571          595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL  661 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  661 (681)
                      .+++|+..+++.... .+-|..++.++.-.|...|+++.|++.|.+.   +.+.|+..+-..++...
T Consensus       470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa---L~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA---LALKPDNIFISELLKLA  532 (611)
T ss_pred             hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH---HhcCCccHHHHHHHHHH
Confidence            999999999999986 2558999999999999999999999999944   57788865555555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1e-08  Score=96.87  Aligned_cols=400  Identities=10%  Similarity=-0.045  Sum_probs=197.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVN-VTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYT  153 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  153 (681)
                      +-.....+.++|.+++|++.|.+..+.  .|+ +.-|.....+|...|+|+++.+.-....+.+ +.-+-.+....+++-
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE  194 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence            455567788999999999999999886  567 7778888888899999999998888777664 333456666777788


Q ss_pred             cCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHH---------HHHHcC--CCCChhhHHHHHHHhhc
Q 047571          154 SCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYM---------KMRELG--VQLNVYTFSCVIKSFAG  222 (681)
Q Consensus       154 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~---------~m~~~g--~~p~~~~~~~ll~~~~~  222 (681)
                      ..|++++|+.=+.         -..++.++-...  -..-+.+++.         .|.+.+  +-|+.....+-...+..
T Consensus       195 ~lg~~~eal~D~t---------v~ci~~~F~n~s--~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~  263 (606)
T KOG0547|consen  195 QLGKFDEALFDVT---------VLCILEGFQNAS--IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA  263 (606)
T ss_pred             hhccHHHHHHhhh---------HHHHhhhcccch--hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence            8888888754321         111111111111  1111111111         122112  33444333333333321


Q ss_pred             cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHH----h-cCChHHHHHHHhc-------cCCC---Ch------hhHHH
Q 047571          223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYF----K-CGKIKLARRVFDE-------TGDR---DI------VVWGS  281 (681)
Q Consensus       223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~-~~~~~~a~~~~~~-------~~~~---~~------~~~~~  281 (681)
                      .-.            .....+.......+..++.    . ...+..|...+.+       -...   |.      .+.+.
T Consensus       264 ~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~  331 (606)
T KOG0547|consen  264 DPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL  331 (606)
T ss_pred             ccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence            100            0000000001111111110    0 0012222222221       1111   11      11222


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcC
Q 047571          282 MIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCR  361 (681)
Q Consensus       282 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  361 (681)
                      -...+.-.|+..+|...|+........++.. |..+...+....+.++....|....+.  .+.++.+|.--..++.-.+
T Consensus       332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~  408 (606)
T KOG0547|consen  332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQ  408 (606)
T ss_pred             hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHH
Confidence            2222344577777888887777654333322 555555566666666666666666554  2233333444444444455


Q ss_pred             CHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571          362 DMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY  438 (681)
Q Consensus       362 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  438 (681)
                      ++++|..-|++...-   ++..|-.+.-+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+.
T Consensus       409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence            666666666655542   3344444444445555666666666665554 333444555555556666666666666665


Q ss_pred             HHHhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHh
Q 047571          439 AVKNQFL-------PNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV---ISWTAMIDSCIENGRLDDALGVFRSM  505 (681)
Q Consensus       439 ~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m  505 (681)
                      .++....       +.+.+-.+++..- -.+++..|.+++.+..+-|+   ..|..|...-.+.|+.++|+++|++.
T Consensus       488 ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  488 AIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5542211       1111111111111 12555555555555554333   24555555555555555555555544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=3.8e-09  Score=94.47  Aligned_cols=153  Identities=12%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH----HHHHHHHHhccc
Q 047571          455 MIMYSKCGVLDYSLKLFDEMEVRNV---ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV----AMARMLSVSGQL  527 (681)
Q Consensus       455 ~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~  527 (681)
                      ..-|...|-+|.|+.+|..+.+.+.   .....|+..|-...+|++|+++-+++...|-++...    .|.-+...+...
T Consensus       114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~  193 (389)
T COG2956         114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS  193 (389)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence            3344445555555555555444211   233344455555555555555555554444333222    222333333334


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHHHHHH
Q 047571          528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEALSLF  603 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~  603 (681)
                      .+.+.|...+.+..+.+. -....--.+.+.+...|+++.|.+.++.+.+.|    ..+...|..+|...|+.++.+..+
T Consensus       194 ~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         194 SDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             hhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            445555555554444331 122223334445555555555555555555433    223444455555555555555555


Q ss_pred             HHHHh
Q 047571          604 DKMRN  608 (681)
Q Consensus       604 ~~m~~  608 (681)
                      .++.+
T Consensus       273 ~~~~~  277 (389)
T COG2956         273 RRAME  277 (389)
T ss_pred             HHHHH
Confidence            55554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=3.3e-08  Score=95.40  Aligned_cols=504  Identities=10%  Similarity=-0.006  Sum_probs=302.1

Q ss_pred             CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571           69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL  148 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  148 (681)
                      +.+..-+..+++-+..+.++..|+-+-++....+  -|+..-..+.+++.-.|+++.|..+...-.-.  ..|..+....
T Consensus        13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~   88 (611)
T KOG1173|consen   13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA   88 (611)
T ss_pred             cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence            3445567777888888888888888777776554  45566666788888888888887776654222  5566677777


Q ss_pred             HHHhhcCCChhHHHHhhhhcCC-CCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchh
Q 047571          149 VKMYTSCGSFEDAEKVFDESSS-ESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALM  227 (681)
Q Consensus       149 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  227 (681)
                      ...+.+..+|+.|..++..... .++..|..--.    .+....+.+.    ++.  ++......+-.=-+.|....+.+
T Consensus        89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~----~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~  158 (611)
T KOG1173|consen   89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA----ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNRE  158 (611)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhhcchhhcchhh----hceeccCccc----ccc--cccchhceeeeeeehhhhhccHH
Confidence            7888888888888888874310 11111100000    0000111111    000  01111111111111223333444


Q ss_pred             hhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047571          228 QGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGI  307 (681)
Q Consensus       228 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  307 (681)
                      +|...+.+....    |...+..+...-..  .+-.+.+.|+.+...|...         -.+.                
T Consensus       159 ~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~---------~~~e----------------  207 (611)
T KOG1173|consen  159 EARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAM---------LTKE----------------  207 (611)
T ss_pred             HHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHh---------hhhh----------------
Confidence            555444443322    22222221111100  0111111111111111100         0011                


Q ss_pred             CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHH
Q 047571          308 YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTAL  384 (681)
Q Consensus       308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l  384 (681)
                        +......+.........-+.....-.. .+..+...+..+...-.+-+...+++.+..++++...+.   +...+..-
T Consensus       208 --d~e~l~~lyel~~~k~~n~~~~~r~~~-~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~  284 (611)
T KOG1173|consen  208 --DVERLEILYELKLCKNRNEESLTRNED-ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH  284 (611)
T ss_pred             --HHHHHHHHHHhhhhhhccccccccCch-hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH
Confidence              111111111111000000000000000 000145556666677777888889999999999888775   44566677


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047571          385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL  464 (681)
Q Consensus       385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  464 (681)
                      |.++...|+..+-..+=.+|.+. .+-...+|-++.-.|...|+..+|.+.|.+....+ +.-...|-.+...|+-.|..
T Consensus       285 ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~Eh  362 (611)
T KOG1173|consen  285 IACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEH  362 (611)
T ss_pred             HHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchH
Confidence            78888999988888888888876 44566788888888888899999999999877644 22345678888899999999


Q ss_pred             HHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571          465 DYSLKLFDEMEV--RNV-ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       465 ~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                      ++|...+....+  |.. ..+--+.--|.+.++..-|.+.|.+.... .+-|+..++-+.-..-..+.+.+|..+|...+
T Consensus       363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            999888766554  221 12223344577889999999999988764 24445556666555666788999999998776


Q ss_pred             Hc----C--CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571          542 KK----D--FASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT  612 (681)
Q Consensus       542 ~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  612 (681)
                      ..    +  ..--..+++.|..+|.+.+++++|...+++...   .+..++.++.-.|...|+++.|++.|.+..-  +.
T Consensus       442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~  519 (611)
T KOG1173|consen  442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LK  519 (611)
T ss_pred             HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cC
Confidence            31    1  112355688899999999999999999998776   6788999999999999999999999999887  67


Q ss_pred             CCHHHHHHHHHHH
Q 047571          613 PNHFTFKVLLSIC  625 (681)
Q Consensus       613 p~~~~~~~l~~~~  625 (681)
                      ||-.+-..++..+
T Consensus       520 p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  520 PDNIFISELLKLA  532 (611)
T ss_pred             CccHHHHHHHHHH
Confidence            8776666665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.3e-09  Score=95.83  Aligned_cols=216  Identities=9%  Similarity=0.059  Sum_probs=158.1

Q ss_pred             CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCcc------hHHHHHHHHHhcCChhHHH
Q 047571          427 KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-RNVI------SWTAMIDSCIENGRLDDAL  499 (681)
Q Consensus       427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~~~~~~A~  499 (681)
                      .+.++|.++|-+|.+.. +-+..+--+|.+.|.+.|.+|.|+++-+.+.+ ||..      ..-.|..-|...|-+|.|+
T Consensus        49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            34445555555554422 22333334455666666666666666665554 3322      2234556688899999999


Q ss_pred             HHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          500 GVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV----PFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       500 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      .+|..+.+.| .--......++..|....+|++|++.-+++.+.+-++.    ...|..+...+....+.+.|..++.+.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            9999998865 33456788999999999999999999999988765543    456777888888889999999999998


Q ss_pred             CCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          576 PVKG---SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       576 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...|   +..--.+.+.....|++++|++.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus       207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            8833   33334466778899999999999999999754445677889999999999999999999888764

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=1.4e-11  Score=81.41  Aligned_cols=50  Identities=20%  Similarity=0.466  Sum_probs=48.1

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571          477 RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ  526 (681)
Q Consensus       477 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  526 (681)
                      ||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999875

>PF13041 PPR_2: PPR repeat family

Probab=99.24  E-value=2.5e-11  Score=80.25  Aligned_cols=50  Identities=26%  Similarity=0.561  Sum_probs=43.4

Q ss_pred             CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571          578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  627 (681)
                      ||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67788888888888888888888888888888888888888888888864

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=4.3e-07  Score=88.38  Aligned_cols=176  Identities=13%  Similarity=0.090  Sum_probs=104.2

Q ss_pred             CChHHHHHHHhhCCCCC-cchHHHHHHHHH--hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHH
Q 047571          462 GVLDYSLKLFDEMEVRN-VISWTAMIDSCI--ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHG  538 (681)
Q Consensus       462 g~~~~a~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  538 (681)
                      +..+.+.++........ ...+.+++..+.  +...+..+.+++...-+..-.-.....-.++......|+++.|.+++.
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            44455555555554322 233344433322  222456666666666554211112333444455566777777777777


Q ss_pred             --------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC------CChhhHHHH----HHHHHcCCChHHHH
Q 047571          539 --------QVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV------KGSITWTAI----IEAYGYNDLCQEAL  600 (681)
Q Consensus       539 --------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l----~~~~~~~~~~~~a~  600 (681)
                              .+.+  +...|.+...++..|.+.++.+-|..++.+...      .+....+++    ...-.++|+-++|.
T Consensus       401 ~~~~~~~ss~~~--~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~  478 (652)
T KOG2376|consen  401 LFLESWKSSILE--AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS  478 (652)
T ss_pred             HHhhhhhhhhhh--hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence                    3333  233456667777778777776666666655443      222333333    33344679999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571          601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVM  641 (681)
Q Consensus       601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  641 (681)
                      .+++++.+.+ ++|..+...++.+|++. +++.|..+-..+
T Consensus       479 s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  479 SLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            9999999864 67889999999999887 467777665533

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.23  E-value=3.1e-09  Score=99.17  Aligned_cols=191  Identities=13%  Similarity=0.045  Sum_probs=118.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571          483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC  562 (681)
Q Consensus       483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  562 (681)
                      ..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...
T Consensus        35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~  112 (234)
T TIGR02521        35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQ  112 (234)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence            333444444444444444444444321 1223333444444444455555555555444432 12334445555555666


Q ss_pred             CCHHHHHHHhhhCCC-----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047571          563 GFLECAKLVFDAVPV-----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI  637 (681)
Q Consensus       563 g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~  637 (681)
                      |++++|...+++...     .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.++
T Consensus       113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  191 (234)
T TIGR02521       113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY  191 (234)
T ss_pred             ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666655543     113356667777888899999999999888753 33567788888888999999999999


Q ss_pred             HHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          638 FNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +++..+.  .+.+...+..++.++...|+.++|.++.+.+.
T Consensus       192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       192 LERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9888764  23345667778888888899999988877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.23  E-value=3e-07  Score=90.45  Aligned_cols=440  Identities=12%  Similarity=0.019  Sum_probs=244.3

Q ss_pred             cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhcCChHHHHHHH
Q 047571          223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFAHNRLRWEALDCA  299 (681)
Q Consensus       223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~  299 (681)
                      .+++...+++.+.+.+ +.+-...+.....-.+...|+-++|..........   +.+.|..+.-.+-...++++|+++|
T Consensus        20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            3455555555555554 22223334333333445566667776666655443   4456666666666667777777777


Q ss_pred             HHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 047571          300 RWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---  376 (681)
Q Consensus       300 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  376 (681)
                      ......+ +-|...+.-+--.-++.|+++..........+.  .+.....|..++.++.-.|+...|..++++....   
T Consensus        99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen   99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT  175 (700)
T ss_pred             HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            7666542 223444555544455556665555555444443  3334445556666666667777776666554321   


Q ss_pred             --ChhhHH------HHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhCCCCC
Q 047571          377 --NEILWT------ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTV-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPN  447 (681)
Q Consensus       377 --~~~~~~------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  447 (681)
                        +...|.      --.....+.|..+.|++.+..-...  ..|...+ .+-...+.+.+++++|..++..+...+ +.+
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn  252 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDN  252 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chh
Confidence              221111      1123345667777777666554432  2233332 233345667778888888888777754 333


Q ss_pred             hhHHHHHHHHHHhcCChHHHH-HHHhhCCC-------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571          448 VSIITSLMIMYSKCGVLDYSL-KLFDEMEV-------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR  519 (681)
Q Consensus       448 ~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  519 (681)
                      ...|..+..++.+..+.-++. .+|....+       |-....+.+    .-..-.+..-+++..+.+.|+++-...+.+
T Consensus       253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S  328 (700)
T KOG1156|consen  253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRS  328 (700)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhHH
Confidence            334444444554333333333 55554443       111111111    111123334456677777776654333333


Q ss_pred             HHHHhccccchHHHHHHHHHHHH----cC----------CCCChhH--HHHHHHHHHhcCCHHHHHHHhhhCCCCCh---
Q 047571          520 MLSVSGQLKALKLGKEIHGQVLK----KD----------FASVPFV--AAENIKMYGMCGFLECAKLVFDAVPVKGS---  580 (681)
Q Consensus       520 ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---  580 (681)
                      +   +-.-...+-..++...+..    .|          -+|++..  +..+++.|-+.|+++.|...++......+   
T Consensus       329 L---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli  405 (700)
T KOG1156|consen  329 L---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI  405 (700)
T ss_pred             H---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence            3   3222222222222222221    11          1344443  35667888899999999999998888433   


Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC--C-hhH---H
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA--L-EEH---Y  654 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~-~~~---~  654 (681)
                      ..|-.=.+.+...|++++|..++++..+.. .||...-..-+.-..++.+.++|.++.....+. |...  + ..+   |
T Consensus       406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~~mqcmW  483 (700)
T KOG1156|consen  406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLAEMQCMW  483 (700)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-ccchhhhHHHhhhHH
Confidence            344444577888999999999999999876 677766666777778999999999999888765 4311  1 111   1


Q ss_pred             H--HHHHHHhhcCCHHHHHHHHHhcc
Q 047571          655 L--IMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       655 ~--~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      -  .=+++|.+.|++-+|.+=+..+.
T Consensus       484 f~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  484 FQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            1  12567888888888887666553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.7e-07  Score=85.57  Aligned_cols=263  Identities=9%  Similarity=-0.026  Sum_probs=181.0

Q ss_pred             CCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhh---HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571          342 RYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEIL---WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT  418 (681)
Q Consensus       342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  418 (681)
                      .++.++.....+..++...|+.++|...|+....-|+.+   .......+.+.|+.++...+...+.... .-+...|-.
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV  305 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV  305 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence            355566666778888888888888888888766543332   2222333457788888888777776542 122233333


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCCh
Q 047571          419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRL  495 (681)
Q Consensus       419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~  495 (681)
                      -.......++++.|..+-++.++.+ +.+...|-.=...+...|++++|.-.|+....   -+..+|..|+.+|...|++
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~  384 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF  384 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence            3344556778889988888877754 33455555555677888999999999987764   3678999999999999999


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHH-HHhc-cccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHh
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARML-SVSG-QLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVF  572 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~  572 (681)
                      .+|.-+-+..... +.-+..+...+. ..|. ....-++|..+++...+.  .|+ ......+...+...|..+++..++
T Consensus       385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            9998877665443 233444444442 2222 233457788888776654  333 445567777888888888888888


Q ss_pred             hhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          573 DAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       573 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      +....  +|....+.|.+.+...+.+++|++.|......
T Consensus       462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            87666  78888888888888888888888888887774

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=5.2e-07  Score=87.81  Aligned_cols=433  Identities=13%  Similarity=0.058  Sum_probs=221.0

Q ss_pred             ChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhH--HHHHHH--hcCChHHHH
Q 047571          190 RYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTS--LIDMYF--KCGKIKLAR  265 (681)
Q Consensus       190 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~~~~~~~a~  265 (681)
                      ++++|.....++...+ +-|...+..-+-++.+.+.+++|+.+.+.   .+..   .+++.  +=.+||  +.+..|+|+
T Consensus        27 e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~---~~~~~~~fEKAYc~Yrlnk~Deal   99 (652)
T KOG2376|consen   27 EYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGAL---LVINSFFFEKAYCEYRLNKLDEAL   99 (652)
T ss_pred             HHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchh---hhcchhhHHHHHHHHHcccHHHHH
Confidence            7777777777776654 33444556666677777777777744332   2210   11111  223333  567778887


Q ss_pred             HHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhhhhhhcccchhhhhhhhccCCC
Q 047571          266 RVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSV-VLTILLPVIGEAWARKLGQEVHAYVLKNERYS  344 (681)
Q Consensus       266 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  344 (681)
                      ..++.....+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-..                     
T Consensus       100 k~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~---------------------  158 (652)
T KOG2376|consen  100 KTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA---------------------  158 (652)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---------------------
Confidence            77775444455555556666777788888888887776654321111 11111111000                     


Q ss_pred             CCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHH---HHHHhCCChHHHHHHHHHHHHcC-------------
Q 047571          345 EELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALM---SGYVSNGRLEQALRSIAWMQQEG-------------  408 (681)
Q Consensus       345 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g-------------  408 (681)
                                         ..+. +.+........+|..+.   -.+...|++.+|+++++...+.+             
T Consensus       159 -------------------l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe  218 (652)
T KOG2376|consen  159 -------------------LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE  218 (652)
T ss_pred             -------------------hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh
Confidence                               0000 11122211111222211   22344555555555555441110             


Q ss_pred             cCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHH---HHHhcCChH--HHHHHHhhCCC------
Q 047571          409 FRPDVVTV-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMI---MYSKCGVLD--YSLKLFDEMEV------  476 (681)
Q Consensus       409 ~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~--~a~~~~~~~~~------  476 (681)
                      +.-...+. ..+.-++...|+.++|..++...++.+. +|........+   +.....++-  .++..++....      
T Consensus       219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~  297 (652)
T KOG2376|consen  219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL  297 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence            00000111 1122234455666666666666665542 22221111111   111111111  11112221111      


Q ss_pred             ---------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc--chHHHHHHHHHHHHcCC
Q 047571          477 ---------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK--ALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       477 ---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~  545 (681)
                               .....-+.++..|..  .-+.+.++....-  +..|. ..+..++..+.+..  ....+.+++....+...
T Consensus       298 l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p  372 (652)
T KOG2376|consen  298 LSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP  372 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence                     111112223333322  2233333322221  12333 34555555554332  35666677666665544


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHhh--------hCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---C--
Q 047571          546 ASVPFVAAENIKMYGMCGFLECAKLVFD--------AVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG---G--  610 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g--  610 (681)
                      .-...+.-..++.....|+++.|.+++.        .+.+  .-+.+...+...+.+.++.+.|..++.+...-   .  
T Consensus       373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t  452 (652)
T KOG2376|consen  373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT  452 (652)
T ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence            4445566777888999999999999998        4444  22344555666677777766666666665421   0  


Q ss_pred             CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          611 FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       611 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      ..+ -..++.-++..-.+.|+-++|...++++.+  -.++|......++-+|++. +.+.|..+-.+++.
T Consensus       453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p  519 (652)
T KOG2376|consen  453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLPP  519 (652)
T ss_pred             cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence            112 223444555555677999999999999987  3566788999999999865 58888888777764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.19  E-value=2.1e-06  Score=85.51  Aligned_cols=138  Identities=13%  Similarity=0.087  Sum_probs=76.4

Q ss_pred             HHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHH
Q 047571          217 IKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEAL  296 (681)
Q Consensus       217 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  296 (681)
                      +.+......|.+|..+++.+.....  ...-|..+.+.|...|+++.|.++|-+.     ..++-.|..|.+.|+++.|.
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence            3344455666666666665554432  2234455566666677777777766542     33555566667777777766


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc
Q 047571          297 DCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET  373 (681)
Q Consensus       297 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  373 (681)
                      ++-.+.  .|.......|..-..-+...|.+.+|++++-.+...          ...|.+|-+.|..+..+++..+.
T Consensus       812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p----------~~aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP----------DKAIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc----------hHHHHHHHhhCcchHHHHHHHHh
Confidence            665433  233334445555555555666666666665544222          23455566666666665555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.19  E-value=4.5e-09  Score=98.08  Aligned_cols=194  Identities=12%  Similarity=0.080  Sum_probs=145.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh
Q 047571          448 VSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS  524 (681)
Q Consensus       448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  524 (681)
                      ...+..+...+...|++++|.+.+++..+  | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            44566667777777778777777776653  2 34466667777777888888888888777653 33445566667777


Q ss_pred             ccccchHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHH
Q 047571          525 GQLKALKLGKEIHGQVLKKDF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEAL  600 (681)
Q Consensus       525 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~  600 (681)
                      ...|++++|...+....+... ......+..+...+...|++++|...+++...  | +...+..+...+...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            777888888888887776432 22345667778888888999999998887766  3 3567888889999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..+++..+. .+.+...+..+...+...|+.++|.++++.+.+
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            999999886 355777788888889999999999999887764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.17  E-value=8.7e-07  Score=88.17  Aligned_cols=399  Identities=11%  Similarity=0.052  Sum_probs=215.1

Q ss_pred             HHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHH
Q 047571          215 CVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE  294 (681)
Q Consensus       215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  294 (681)
                      ..|..|....+|+++..+-+   ..|.+.-...-.+.++++...|+-++|-++-+.    +..+. +.|..|.+.|.+..
T Consensus       562 ~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dgd~l-aaiqlyika~~p~~  633 (1636)
T KOG3616|consen  562 EAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DGDGL-AAIQLYIKAGKPAK  633 (1636)
T ss_pred             HHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cCccH-HHHHHHHHcCCchH
Confidence            34555666666777766533   234333334445556666777777776554322    22222 34667788888777


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571          295 ALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE  374 (681)
Q Consensus       295 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  374 (681)
                      |......=  ..+..|......+..++.+..-++.|-.+|+.+...          ...+.+|-+-+.+.+|.++-+-.-
T Consensus       634 a~~~a~n~--~~l~~de~il~~ia~alik~elydkagdlfeki~d~----------dkale~fkkgdaf~kaielarfaf  701 (1636)
T KOG3616|consen  634 AARAALND--EELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF----------DKALECFKKGDAFGKAIELARFAF  701 (1636)
T ss_pred             HHHhhcCH--HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----------HHHHHHHHcccHHHHHHHHHHhhC
Confidence            76654211  112345555555555555555555555555544332          223333333333444443322211


Q ss_pred             CCChhh-HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571          375 ERNEIL-WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS  453 (681)
Q Consensus       375 ~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  453 (681)
                      ...++. =......+...|+++.|+..|-+...         .--.+.+....+.+.+|..+++.+...+.  ...-|..
T Consensus       702 p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~  770 (1636)
T KOG3616|consen  702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE  770 (1636)
T ss_pred             cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence            111111 12233344555666666655433221         12234455566777888888777666432  2344666


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG  533 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  533 (681)
                      +.+-|+..|+++.|+++|.+..     .++-.|..|.+.|+|+.|.++-.+..  |.......|..-..-.-..|++.+|
T Consensus       771 iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea  843 (1636)
T KOG3616|consen  771 IADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA  843 (1636)
T ss_pred             HHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh
Confidence            7777888888888888886643     35566777888888888887765553  2233333444444445556666666


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571          534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT  612 (681)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  612 (681)
                      .+++-.+.    .|+     ..+++|-+.|..+...++.++-.... ..+...+..-|-..|+...|..-|-+..+    
T Consensus       844 eqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----  910 (1636)
T KOG3616|consen  844 EQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----  910 (1636)
T ss_pred             hheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----
Confidence            66553321    122     34667777777777777766544311 33555566667777777777766544332    


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                           |...++.|...+.|++|.++-.   ...|-..    -..+.-..+++=--+.|.+++++
T Consensus       911 -----~kaavnmyk~s~lw~dayriak---tegg~n~----~k~v~flwaksiggdaavkllnk  962 (1636)
T KOG3616|consen  911 -----FKAAVNMYKASELWEDAYRIAK---TEGGANA----EKHVAFLWAKSIGGDAAVKLLNK  962 (1636)
T ss_pred             -----HHHHHHHhhhhhhHHHHHHHHh---ccccccH----HHHHHHHHHHhhCcHHHHHHHHh
Confidence                 5556666777777777766654   2212222    12222333343334566666665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=4e-06  Score=76.40  Aligned_cols=404  Identities=9%  Similarity=0.015  Sum_probs=198.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571           79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF  158 (681)
Q Consensus        79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  158 (681)
                      +.-+....++..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.... .++...+..|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            66677788999999988877654433233444455666778899999999998887755 55555555566555566888


Q ss_pred             hHHHHhhhhcCCCCCccHHHHHHHHH-HcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHH
Q 047571          159 EDAEKVFDESSSESVYPWNALLRGAV-IAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLI  237 (681)
Q Consensus       159 ~~a~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  237 (681)
                      .+|..+-.+.++  ....+.++-.++ +.+  +-.+-...-+.+.+     ...---++....-..-.+.+|..++....
T Consensus       108 ~eA~~~~~ka~k--~pL~~RLlfhlahkln--dEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL  178 (557)
T KOG3785|consen  108 IEAKSIAEKAPK--TPLCIRLLFHLAHKLN--DEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL  178 (557)
T ss_pred             HHHHHHHhhCCC--ChHHHHHHHHHHHHhC--cHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887765432  222333333222 222  22222222222111     00111112222222334566666666655


Q ss_pred             HhCCCCCcHHHhH-HHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 047571          238 KNGFVDYLILRTS-LIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVV  313 (681)
Q Consensus       238 ~~g~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  313 (681)
                      ..+  |.-...|. +.-+|.+..-++-+.++++-..+  | +....|.......+.-+-..|.+-.+++.+.+-..    
T Consensus       179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----  252 (557)
T KOG3785|consen  179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----  252 (557)
T ss_pred             hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence            432  22222222 22344555555555555543322  2 23334444433333322223333333333322110    


Q ss_pred             HHHHHHHHhhh-----hhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 047571          314 LTILLPVIGEA-----WARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGY  388 (681)
Q Consensus       314 ~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  388 (681)
                      |. .+.-+++.     ++-+.|.+++-.+++.   -  +...-.|+-.|.+.+++.+|..+.+++.-.++.-|-.-.-.+
T Consensus       253 ~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~---I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~  326 (557)
T KOG3785|consen  253 YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH---I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVF  326 (557)
T ss_pred             ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh---C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence            11 11111111     2334444444333332   1  122234555677777777777777776654433332222222


Q ss_pred             HhCCC-------hHHHHHHHHHHHHcCcCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 047571          389 VSNGR-------LEQALRSIAWMQQEGFRPDVVTV-ATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK  460 (681)
Q Consensus       389 ~~~~~-------~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  460 (681)
                      ...|+       ..-|.+.|+..-+.+..-|...- -.+.+++.-..+++.+..++..+...-...|...+| +.++++.
T Consensus       327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a  405 (557)
T KOG3785|consen  327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA  405 (557)
T ss_pred             HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence            22222       33455555544444433332221 223333444455666666666665544334444443 5666777


Q ss_pred             cCChHHHHHHHhhCCCC---CcchHHH-HHHHHHhcCChhHHHHHHHHh
Q 047571          461 CGVLDYSLKLFDEMEVR---NVISWTA-MIDSCIENGRLDDALGVFRSM  505 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~~~~~m  505 (681)
                      .|.+.+|+++|-.+..|   |..+|.+ |.++|.+.+.++-|+.++-++
T Consensus       406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT  454 (557)
T ss_pred             hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence            77777777777666653   3445544 345666777777766665444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=1.9e-08  Score=85.93  Aligned_cols=192  Identities=15%  Similarity=0.007  Sum_probs=152.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      ...|.-.|...|+...|.+-+++..+.. +-+..++..+...|.+.|..+.|.+.|++.++.. +-+..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            3445566777777777777777777652 3334466666777777788888888777777653 3357788888999999


Q ss_pred             cCCHHHHHHHhhhCCC-CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571          562 CGFLECAKLVFDAVPV-KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                      .|++++|...|++... |.    ..+|..+..+..+.|+.+.|...|++..+.. +-.+.+...+.....+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            9999999999998777 54    5689999988899999999999999999863 3466788889999999999999999


Q ss_pred             HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +++......+  ++.++....|+.-.+.||.+.|.++=.++.
T Consensus       195 ~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~qL~  234 (250)
T COG3063         195 YLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ  234 (250)
T ss_pred             HHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9999887533  888999999999999999999988755543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.12  E-value=7.7e-08  Score=97.11  Aligned_cols=175  Identities=11%  Similarity=0.012  Sum_probs=121.4

Q ss_pred             HHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc----C----------CCCCh--hHHHHHHHHHHh
Q 047571          498 ALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----D----------FASVP--FVAAENIKMYGM  561 (681)
Q Consensus       498 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~  561 (681)
                      +...+..+..+|+++   +|..+-..|....+.+....++......    +          -.|+.  -++..+.+.|-.
T Consensus       130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~  206 (517)
T PF12569_consen  130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY  206 (517)
T ss_pred             HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence            444556666667544   3444444455555555555555544321    1          12333  244666788888


Q ss_pred             cCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571          562 CGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF  638 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~  638 (681)
                      .|++++|.+++++...  |. +..|..-...+-+.|++++|.+.++...+.. .-|...-+-.+..+.+.|+.++|.+++
T Consensus       207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998777  54 5567777888899999999999999999864 447777777888889999999999999


Q ss_pred             HHhhhcCCCCCChhH--------HHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          639 NVMSRGYKIEALEEH--------YLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       639 ~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ....+. +..|....        ....+.+|.+.|++..|+..+..+
T Consensus       286 ~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  286 SLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            988775 43443221        244578899999999999877665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.12  E-value=4.9e-06  Score=82.17  Aligned_cols=447  Identities=12%  Similarity=0.050  Sum_probs=214.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCc---cHHHHHHHHHH
Q 047571          109 TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVY---PWNALLRGAVI  185 (681)
Q Consensus       109 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~  185 (681)
                      .|..++..| ..+++...+.+.+.+.+ +.+-...+.....-.+...|+-++|......-.+.|+.   +|.++.-.+..
T Consensus        10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen   10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            344444443 44566666666666665 22333344433333445556677776666554433332   24443322222


Q ss_pred             cCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHH
Q 047571          186 AGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLAR  265 (681)
Q Consensus       186 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~  265 (681)
                      ..  ++++|+.+|......  .||                                  |...+..+.-.-+..++++...
T Consensus        88 dK--~Y~eaiKcy~nAl~~--~~d----------------------------------N~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   88 DK--KYDEAIKCYRNALKI--EKD----------------------------------NLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hh--hHHHHHHHHHHHHhc--CCC----------------------------------cHHHHHHHHHHHHHHHhhhhHH
Confidence            22  555555555554432  222                                  2333333322223333333333


Q ss_pred             HHHhccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHH------hhhhhhcccchhhh
Q 047571          266 RVFDETGD---RDIVVWGSMIAGFAHNRLRWEALDCARWMIREG-IYPNSVVLTILLPVI------GEAWARKLGQEVHA  335 (681)
Q Consensus       266 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~------~~~~~~~~a~~~~~  335 (681)
                      .......+   .....|..+..++.-.|+...|..+++...+.. -.|+...|......+      ...|..+.|.+.+.
T Consensus       130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~  209 (700)
T KOG1156|consen  130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL  209 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            32222221   233445555555566666666666666665543 234444443332222      22233333433333


Q ss_pred             hhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC--ChhhHH-HHHHHHHhCCChHHHH-HHHHHHHHc---C
Q 047571          336 YVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER--NEILWT-ALMSGYVSNGRLEQAL-RSIAWMQQE---G  408 (681)
Q Consensus       336 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~li~~~~~~~~~~~A~-~~~~~m~~~---g  408 (681)
                      .....  +......-..-...+.+.+++++|..++..+..+  |...|. .+..++.+-.+.-+++ .+|....+.   .
T Consensus       210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            22221  1122222234455666777777777777777664  333333 3333333222223333 444444332   1


Q ss_pred             cCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH----HHHhhCC---------
Q 047571          409 FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL----KLFDEME---------  475 (681)
Q Consensus       409 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~---------  475 (681)
                      -.|-...    +.......-.+....++..+.+.|+++-.....+   .|-.-.+.+-.+    .+...+.         
T Consensus       288 e~p~Rlp----lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~S---Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D  360 (700)
T KOG1156|consen  288 ECPRRLP----LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRS---LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD  360 (700)
T ss_pred             ccchhcc----HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHH---HHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence            1111111    1111112223334445555566665543222222   221111111111    1111111         


Q ss_pred             -----CCCcc--hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCC
Q 047571          476 -----VRNVI--SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFAS  547 (681)
Q Consensus       476 -----~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  547 (681)
                           .|...  ++--++..+-+.|+++.|+..++....+  .|+.. -|..-.+.+...|+++.|..++++..+.+ .+
T Consensus       361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~a  437 (700)
T KOG1156|consen  361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TA  437 (700)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-ch
Confidence                 12222  3344566677788888888888877764  55543 34444566777788888888888777655 34


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChh----------hHHHH--HHHHHcCCChHHHHHHHHHHH
Q 047571          548 VPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSI----------TWTAI--IEAYGYNDLCQEALSLFDKMR  607 (681)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l--~~~~~~~~~~~~a~~~~~~m~  607 (681)
                      |..+-..-+....++.+.++|.++.....+.+..          .|-.+  ..+|.+.|++..|++-|....
T Consensus       438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            5555556667777778888888887766663311          23222  455667777777776555543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=4e-09  Score=94.26  Aligned_cols=223  Identities=11%  Similarity=0.018  Sum_probs=161.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047571          382 TALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC  461 (681)
Q Consensus       382 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  461 (681)
                      +.+.++|.+.|.+.+|.+.|+.-.+.  .|-..||..+-.+|.+..++..|+.++.+-.+. ++-++.....+...+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            56777888888888888888877765  466667777888888888888888888776654 234444445667777778


Q ss_pred             CChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHH
Q 047571          462 GVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHG  538 (681)
Q Consensus       462 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  538 (681)
                      ++.++|.++++...+   .++.....+...|.-.++++-|+..|+++.+.|+. +...|..+.-+|...++++.+...|.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            888888888888765   34455555666777888999999999999998854 55677777778888888888888888


Q ss_pred             HHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          539 QVLKKDFASV--PFVAAENIKMYGMCGFLECAKLVFDAVPVK---GSITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       539 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      .....--.|+  .++|-.+.......|++.-|.+.|+-....   +..++|.|.-.-.+.|++++|..+++...+
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            7776433333  556666666667777777777777766552   255677776666677777777777776665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=2.4e-07  Score=84.12  Aligned_cols=448  Identities=12%  Similarity=0.017  Sum_probs=243.6

Q ss_pred             HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcC
Q 047571          180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCG  259 (681)
Q Consensus       180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  259 (681)
                      +.-+....  ++.+|+.+++--...+-.-...+--.+...+...|++++|...+..+.+.. .++......|..++.-.|
T Consensus        29 Ledfls~r--DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   29 LEDFLSNR--DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG  105 (557)
T ss_pred             HHHHHhcc--cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence            66677777  888888888775544322222333344456678888998888888777643 455566666777777788


Q ss_pred             ChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhh
Q 047571          260 KIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLK  339 (681)
Q Consensus       260 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  339 (681)
                      .+.+|..+-....+ +...-..|...--+.++-++...+-+.+.+.     ...-.+|.......-.+++|.+++..+..
T Consensus       106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888887765432 2223333444445566666655555544331     11112222222233456666677666654


Q ss_pred             ccCCCCCchHHh-HHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571          340 NERYSEELFVRS-SLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT  415 (681)
Q Consensus       340 ~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  415 (681)
                      .   .|.....| .+.-+|.+.+-++-+.++++....  | +..+.|.......+.=.-..|.+-...+.+.+-..    
T Consensus       180 d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----  252 (557)
T KOG3785|consen  180 D---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----  252 (557)
T ss_pred             c---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence            4   12222222 233345555556655555544332  2 23333433333333222233333344444332111    


Q ss_pred             HHHHHHHhhc-----cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047571          416 VATVIPVCSQ-----LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCI  490 (681)
Q Consensus       416 ~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~  490 (681)
                       ...+.-+++     -..-+.|.+++--+.+.  -|...  -.|+-.|.+.+++++|..+.+++.-..+.-|-.-.-.+.
T Consensus       253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~a  327 (557)
T KOG3785|consen  253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFA  327 (557)
T ss_pred             -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence             111222222     22345566665544432  22222  224556778899999999888876544433322222233


Q ss_pred             hcCC-------hhHHHHHHHHhHhCCCCCCHHH-HHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571          491 ENGR-------LDDALGVFRSMQLSKHRPDSVA-MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC  562 (681)
Q Consensus       491 ~~~~-------~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  562 (681)
                      ..|+       ..-|.+.|+-.-+.+..-|... -..+.+++--..+++...-++..+...-.. |....-.+.++++..
T Consensus       328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~at  406 (557)
T KOG3785|consen  328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLAT  406 (557)
T ss_pred             HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHh
Confidence            3332       3345555555444443333221 223344444556677777777666654333 333344578888888


Q ss_pred             CCHHHHHHHhhhCCCC---ChhhHHH-HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHHHH
Q 047571          563 GFLECAKLVFDAVPVK---GSITWTA-IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK-VLLSICNQAGFADEACRI  637 (681)
Q Consensus       563 g~~~~a~~~~~~~~~~---~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~  637 (681)
                      |++.+|+++|-.+..|   |..+|.+ |.+.|.+.+..+.|.+++-++..   +.+..+.. .+..-|.+.+.+=-|.+.
T Consensus       407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA  483 (557)
T KOG3785|consen  407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA  483 (557)
T ss_pred             cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998887773   4566765 45667788888888666544432   33444443 444678888888888888


Q ss_pred             HHHhhhcCCCCCChhHHH
Q 047571          638 FNVMSRGYKIEALEEHYL  655 (681)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~  655 (681)
                      |+.+..   ..|+++.|.
T Consensus       484 Fd~lE~---lDP~pEnWe  498 (557)
T KOG3785|consen  484 FDELEI---LDPTPENWE  498 (557)
T ss_pred             hhHHHc---cCCCccccC
Confidence            887764   355555553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=5.7e-06  Score=83.67  Aligned_cols=507  Identities=12%  Similarity=0.091  Sum_probs=257.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhC-CC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH
Q 047571           74 AIYKDIQRFARQNKLKEALVILDYMDQQ-GI--------PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL  144 (681)
Q Consensus        74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  144 (681)
                      .|..+.+-+.+.++.+-|.-.+..|... |.        .++ .+=.-+.......|.+++|..+|.+-++.        
T Consensus       759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~--------  829 (1416)
T KOG3617|consen  759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY--------  829 (1416)
T ss_pred             HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------
Confidence            4666666666666666666666555321 10        111 11111222223456666666666665543        


Q ss_pred             HHHHHHHhhcCCChhHHHHhhhhcCCCCCc-cHHHHHHHHHHcCCcChhhHHHHHHHH----------HHc---------
Q 047571          145 RTKLVKMYTSCGSFEDAEKVFDESSSESVY-PWNALLRGAVIAGKKRYRGVLFNYMKM----------REL---------  204 (681)
Q Consensus       145 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~m----------~~~---------  204 (681)
                       ..|-..|...|.|++|.++-+.-.+-... +|.....-+-..+  +.+.|++.|++-          ...         
T Consensus       830 -DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~--Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv  906 (1416)
T KOG3617|consen  830 -DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR--DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV  906 (1416)
T ss_pred             -HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc--cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence             34555666677788877776643332222 2444444444444  777777777651          111         


Q ss_pred             CCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHH
Q 047571          205 GVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIA  284 (681)
Q Consensus       205 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~  284 (681)
                      .-.-|...|...-..+-..|+.+.|+.++...+.         |-.+++..|-.|+.++|-++-++  ..|......+..
T Consensus       907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR  975 (1416)
T KOG3617|consen  907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLAR  975 (1416)
T ss_pred             HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHH
Confidence            0112333344444444455666666666554432         33455556666777766666554  245667777888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhh---------------hcccchhhhhhhhccCCCCCchH
Q 047571          285 GFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWA---------------RKLGQEVHAYVLKNERYSEELFV  349 (681)
Q Consensus       285 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~~~a~~~~~~~~~~~~~~~~~~~  349 (681)
                      .|-..|++.+|..+|.+..         +|...|+.|...+-               .-.|...|+..-         .-
T Consensus       976 ~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---------~~ 1037 (1416)
T KOG3617|consen  976 MYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---------GY 1037 (1416)
T ss_pred             HhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---------hh
Confidence            8888888888888887654         23333333332221               111222222111         01


Q ss_pred             HhHHHHHHHhcCCHHHHHHHHhhcCC--------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571          350 RSSLVDMYCKCRDMNSAWRVFYETEE--------------RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT  415 (681)
Q Consensus       350 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  415 (681)
                      ....+..|-+.|.+.+|+++--+-.+              .|+...+--.+-++...++++|..++-..++         
T Consensus      1038 ~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~--------- 1108 (1416)
T KOG3617|consen 1038 AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE--------- 1108 (1416)
T ss_pred             hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------
Confidence            12334556666666666655322222              1444555555556666667776666654443         


Q ss_pred             HHHHHHHhhccCChhHHHHHHHHHHH-hCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047571          416 VATVIPVCSQLKALNHGKEIHAYAVK-NQFLPNV----SIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCI  490 (681)
Q Consensus       416 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~  490 (681)
                      |.-.+..| +..++.--.++-+.|.- ..-.|+.    .+...+...|.+.|.+..|-+-|.+.-.+     -..++++.
T Consensus      1109 ~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLL 1182 (1416)
T KOG3617|consen 1109 FSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALL 1182 (1416)
T ss_pred             HHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHH
Confidence            22222222 22222222222222221 1112222    33445566677777777777766554321     12345555


Q ss_pred             hcCChhHHHHHH-------------HHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571          491 ENGRLDDALGVF-------------RSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK  557 (681)
Q Consensus       491 ~~~~~~~A~~~~-------------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  557 (681)
                      +.|+.++..-.-             +-++....+.+..+...++..|.+...++.--.+|+....-.+    .-    .+
T Consensus      1183 KSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqiEi----ee----~q 1254 (1416)
T KOG3617|consen 1183 KSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQIEI----EE----LQ 1254 (1416)
T ss_pred             hcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHhhH----HH----Hh
Confidence            666554321110             1112233455666666666666666555555555443322110    00    11


Q ss_pred             HHHh-cCCHHHHHHHhhhCCCCC--hhhHHHH----------HHHHH-cCCChHHHHHHHHHHHhCCCCCC----HHHHH
Q 047571          558 MYGM-CGFLECAKLVFDAVPVKG--SITWTAI----------IEAYG-YNDLCQEALSLFDKMRNGGFTPN----HFTFK  619 (681)
Q Consensus       558 ~~~~-~g~~~~a~~~~~~~~~~~--~~~~~~l----------~~~~~-~~~~~~~a~~~~~~m~~~g~~p~----~~~~~  619 (681)
                      -|.+ .|-+++|...+.++..++  ...|+.|          +.... -..|..+.+.-...|.+...-||    ...|.
T Consensus      1255 ~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a 1334 (1416)
T KOG3617|consen 1255 TYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFA 1334 (1416)
T ss_pred             hhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHH
Confidence            1222 255666777766666533  2223333          22211 12345555555555665443333    46788


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          620 VLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       620 ~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      .||..+....++..|-+.+.+|.++
T Consensus      1335 ~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1335 LLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred             HHHHHHHhhhhccHHHHHHHHHhhc
Confidence            8999999999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=4.1e-09  Score=94.17  Aligned_cols=223  Identities=12%  Similarity=0.041  Sum_probs=127.7

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchH-HHHHHHHHhcCC
Q 047571          418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISW-TAMIDSCIENGR  494 (681)
Q Consensus       418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~~~  494 (681)
                      .+-.+|.+.|-+.+|.+-++...+.  .|-+.||-.|-..|.+..++..|+.++.+-.+  |-.+|| .-+.+.+...++
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~  305 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ  305 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence            4445555566666665555554443  34444555555556666666666655555443  322332 334444555555


Q ss_pred             hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhh
Q 047571          495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDA  574 (681)
Q Consensus       495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  574 (681)
                      .++|.++|+...+.. ..+......+...|-..++.+.|..+++.+++.|+                             
T Consensus       306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----------------------------  355 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----------------------------  355 (478)
T ss_pred             HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----------------------------
Confidence            555555555555432 23333344444444444555555555555555443                             


Q ss_pred             CCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChh
Q 047571          575 VPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE  652 (681)
Q Consensus       575 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  652 (681)
                         .+...|+.+.-+|...+++|-++.-|++....--.|+  ...|..+.......||+..|.+.|+.....  .....+
T Consensus       356 ---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~e  430 (478)
T KOG1129|consen  356 ---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGE  430 (478)
T ss_pred             ---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHH
Confidence               2344566666666677777777777777766543343  345667777777777888887777766542  222356


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          653 HYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       653 ~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .++.|.-.-.+.|++++|+.+++.-
T Consensus       431 alnNLavL~~r~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  431 ALNNLAVLAARSGDILGARSLLNAA  455 (478)
T ss_pred             HHHhHHHHHhhcCchHHHHHHHHHh
Confidence            7777777777778888887777643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=2.3e-05  Score=81.34  Aligned_cols=277  Identities=14%  Similarity=0.097  Sum_probs=164.3

Q ss_pred             ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC--cCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-----------
Q 047571          377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEG--FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ-----------  443 (681)
Q Consensus       377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------  443 (681)
                      |+..-+..+.++...+-..+-+++++++.-..  +.-+...-+.++-...+ -+..++.++.+.+....           
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhh
Confidence            55566777888888888888888888876432  11111222223222222 22233333333332221           


Q ss_pred             ------------CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC
Q 047571          444 ------------FLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR  511 (681)
Q Consensus       444 ------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  511 (681)
                                  +..+....+.|+.   ..+..++|.++-++..+|  ..|+.+..+-.+.|.+.+|++-|-+.      
T Consensus      1062 ~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence                        1122222222222   234455555555555443  46888999999999999998877544      


Q ss_pred             CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHH
Q 047571          512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYG  591 (681)
Q Consensus       512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~  591 (681)
                      -|...|..+++.+.+.|.+++-.+++...+++.-+|...  ..|+-+|++.+++.+.++++..   ||..-...+.+-|.
T Consensus      1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCF 1205 (1666)
T ss_pred             CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHh
Confidence            356689999999999999999999999988876665544  5789999999999888877643   44444444444455


Q ss_pred             cCCChHHHHHHHHHHHh-------------------CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571          592 YNDLCQEALSLFDKMRN-------------------GG-FTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALE  651 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~~-------------------~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  651 (681)
                      ..|.++.|.-+|.....                   .. -..+..||...-.+|...+.+.-|.-     . .+.+-...
T Consensus      1206 ~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQi-----C-GL~iivha 1279 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQI-----C-GLNIIVHA 1279 (1666)
T ss_pred             hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHh-----c-CceEEEeh
Confidence            55554444433332110                   00 01234455555555555544443321     1 11233335


Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          652 EHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       652 ~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      .-...|++-|...|-++|-+.+++.
T Consensus      1280 deLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred             HhHHHHHHHHHhcCcHHHHHHHHHh
Confidence            5677888889999999998888774

>PRK12370 invasion protein regulator; Provisional

Probab=99.07  E-value=3.5e-08  Score=103.48  Aligned_cols=178  Identities=13%  Similarity=0.103  Sum_probs=82.7

Q ss_pred             ChHHHHHHHHHHHHcCcCCCHH-HHHHHHHHhhc---------cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571          393 RLEQALRSIAWMQQEGFRPDVV-TVATVIPVCSQ---------LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG  462 (681)
Q Consensus       393 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  462 (681)
                      ..++|...|++..+.  .|+.. .|..+..++..         .++.++|...++++.+.+ +.+...+..+...+...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            355666777666654  34332 23333222221         123455556555555543 334444555555555556


Q ss_pred             ChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHH
Q 047571          463 VLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHG  538 (681)
Q Consensus       463 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~  538 (681)
                      ++++|...|++..+  | +...+..+..++...|++++|+..+++..+..  |+.. .+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            66666666655443  2 22344555555555666666666666555532  2211 11222223333445555555555


Q ss_pred             HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          539 QVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       539 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ++.+...+.++..+..+..+|...|+.++|...+.++
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~  467 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI  467 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            5443321222333344444444444444444444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.07  E-value=2e-08  Score=99.99  Aligned_cols=190  Identities=16%  Similarity=0.221  Sum_probs=92.7

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC-------C---C-cchHHHHHHHHHhcCChhHHHHHHHHhHh-----CCC-CCCHH
Q 047571          453 SLMIMYSKCGVLDYSLKLFDEMEV-------R---N-VISWTAMIDSCIENGRLDDALGVFRSMQL-----SKH-RPDSV  515 (681)
Q Consensus       453 ~l~~~~~~~g~~~~a~~~~~~~~~-------~---~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~g~-~p~~~  515 (681)
                      .+...|...+++++|..+|+++..       +   . ..+++.|..+|.+.|++++|...+++..+     .|. .|...
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            344555566666666666655432       1   1 13555566666777776666665555432     111 12222


Q ss_pred             -HHHHHHHHhccccchHHHHHHHHHHHHc---CCC----CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--------CC
Q 047571          516 -AMARMLSVSGQLKALKLGKEIHGQVLKK---DFA----SVPFVAAENIKMYGMCGFLECAKLVFDAVPV--------KG  579 (681)
Q Consensus       516 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~  579 (681)
                       .++.+...|...+.+++|..++....+.   -+.    ..+.+++.+...|.+.|++++|+++++++..        .+
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence             2344445566666777777666654431   111    1134555555555555555555555554433        00


Q ss_pred             ---hhhHHHHHHHHHcCCChHHHHHHHHHHH----hCCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          580 ---SITWTAIIEAYGYNDLCQEALSLFDKMR----NGGF-TPN-HFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       580 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                         ...++.|...|.+.+++.+|.++|.+..    .-|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               2234445555555555555555554422    1111 111 2345555555555555555555555443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=3.8e-05  Score=79.77  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=80.6

Q ss_pred             HhHHHHHHHhcCChHHHHHHHhccCCC-ChhhHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047571          248 RTSLIDMYFKCGKIKLARRVFDETGDR-DIVVWG-----SMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVI  321 (681)
Q Consensus       248 ~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  321 (681)
                      +..+.+.|.+.|-...|++.+..+.+- -.+..+     ..+-.|.-.-.++++++.++.|...+++.|..+...+..-|
T Consensus       609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky  688 (1666)
T KOG0985|consen  609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY  688 (1666)
T ss_pred             HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344566777888888888877765541 111111     12334555567888999999999888888877666555555


Q ss_pred             hhhhhhcccchhhhhhhhc----------cCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhc
Q 047571          322 GEAWARKLGQEVHAYVLKN----------ERYSEELFVRSSLVDMYCKCRDMNSAWRVFYET  373 (681)
Q Consensus       322 ~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  373 (681)
                      ...=-.+...++|+.....          -.+..|+.+.-..|.+.|+.|.+.+..++.++-
T Consensus       689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres  750 (1666)
T KOG0985|consen  689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES  750 (1666)
T ss_pred             HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence            4443333333333333222          245677777788999999999999988887654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.06  E-value=1.1e-05  Score=81.59  Aligned_cols=479  Identities=16%  Similarity=0.032  Sum_probs=235.8

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH---HHhcCChhHH-------------------HH----HHHHHHHhC
Q 047571           84 RQNKLKEALVILDYMDQQGIPVNVTTFNALITA---CVRTRSLVEG-------------------RL----IHTHIRING  137 (681)
Q Consensus        84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a-------------------~~----~~~~~~~~~  137 (681)
                      ..++...++.-+.....++-+.++.++..+...   |...++.+++                   ..    .+.++....
T Consensus       239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~  318 (799)
T KOG4162|consen  239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK  318 (799)
T ss_pred             CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence            345556666666665555544444444444332   2223333333                   21    222233334


Q ss_pred             CCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCC---CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHH
Q 047571          138 LENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE---SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFS  214 (681)
Q Consensus       138 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  214 (681)
                      +..++..|..|.-++..+|+++.+.+.|++...-   ....|+.+-..+...|  .-..|+.++++-....-.|+..+--
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag--~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG--SDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc--cchHHHHHHHhhcccccCCCcchHH
Confidence            5667777887877788888888888888765432   2233666666666666  6667777766644333235444433


Q ss_pred             HHHH-Hhh-ccCchhhhHHHHHHHHHh--CC--CCCcHHHhHHHHHHHhc-----------CChHHHHHHHhccCCC---
Q 047571          215 CVIK-SFA-GASALMQGLKTHALLIKN--GF--VDYLILRTSLIDMYFKC-----------GKIKLARRVFDETGDR---  274 (681)
Q Consensus       215 ~ll~-~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~~~~~---  274 (681)
                      .++. .|. +.+.++++..+-......  +.  ......|..+.-+|...           ....++++.+++..+.   
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3333 232 345555555555444441  11  11123333333333221           1123445555554332   


Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHH
Q 047571          275 DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLV  354 (681)
Q Consensus       275 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  354 (681)
                      |....-.+.--|+..++++.|.+...+..+-+-.-+...|..+...+...+++..|..+.+.....-|  .|..      
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~------  548 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHV------  548 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhh------
Confidence            32222233334556667777777777766665555666666666666666666666666655544311  1111      


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHH
Q 047571          355 DMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKE  434 (681)
Q Consensus       355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  434 (681)
                                               ....-++.-..-++.++++.....+..-=  -+....       ...++-....+
T Consensus       549 -------------------------l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~-------q~~~~~g~~~~  594 (799)
T KOG4162|consen  549 -------------------------LMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGV-------QQTLDEGKLLR  594 (799)
T ss_pred             -------------------------hchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhH-------hhhhhhhhhhh
Confidence                                     11111112222344444444444333210  000000       00000000111


Q ss_pred             HHHHHHH--hCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCCCCCcc------hHHHHHHHHHhcCChhHHHHHHH
Q 047571          435 IHAYAVK--NQFLPNVSIITSLMIMYSKCG---VLDYSLKLFDEMEVRNVI------SWTAMIDSCIENGRLDDALGVFR  503 (681)
Q Consensus       435 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~A~~~~~  503 (681)
                      ....+.-  ........++..+.......+   ..+.....+.....|+..      .|......+.+.+..++|...+.
T Consensus       595 lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~  674 (799)
T KOG4162|consen  595 LKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL  674 (799)
T ss_pred             hhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            1111100  000111222222221111100   011111111111112211      22233333444444444444443


Q ss_pred             HhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-h
Q 047571          504 SMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-S  580 (681)
Q Consensus       504 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~  580 (681)
                      +...                                   .. ...+..|......+...|++++|.+.|.....  |+ +
T Consensus       675 Ea~~-----------------------------------~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv  718 (799)
T KOG4162|consen  675 EASK-----------------------------------ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV  718 (799)
T ss_pred             HHHh-----------------------------------cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence            3332                                   11 22355556666677777888888888876655  44 6


Q ss_pred             hhHHHHHHHHHcCCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          581 ITWTAIIEAYGYNDLCQEALS--LFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+..++...+.+.|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|+...+
T Consensus       719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            778888888888888777777  889998865 55889999999999999999999999987754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=9.9e-06  Score=82.02  Aligned_cols=84  Identities=13%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 047571          310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYV  389 (681)
Q Consensus       310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~  389 (681)
                      |...|..-..-+...|+.+.|..+|......          -++++..|-.|+.++|-++-++-  .|..+.-.+.+.|-
T Consensus       911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YE  978 (1416)
T KOG3617|consen  911 DESLYSWWGQYLESVGEMDAALSFYSSAKDY----------FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYE  978 (1416)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHhhhh----------hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhh
Confidence            3344444555555566666666666655544          56677777778877777776553  24445556777777


Q ss_pred             hCCChHHHHHHHHHHH
Q 047571          390 SNGRLEQALRSIAWMQ  405 (681)
Q Consensus       390 ~~~~~~~A~~~~~~m~  405 (681)
                      ..|++.+|...|.+.+
T Consensus       979 n~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  979 NDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            7788888777776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.05  E-value=4.1e-08  Score=102.90  Aligned_cols=237  Identities=10%  Similarity=-0.039  Sum_probs=134.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCh
Q 047571          428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS---------KCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRL  495 (681)
Q Consensus       428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~  495 (681)
                      +.++|..++++..+.. +.+...+..+..+|.         ..+++++|...+++..+  | +...+..+...+...|++
T Consensus       276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            3566777777766543 223334444444332         22346677777776664  2 344566666667777777


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ++|+..|++..+.+ +.+...+..+..++...|++++|...++...+.+.. ++..+..++..+...|++++|...+++.
T Consensus       355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            77777777777653 223445566666677777777777777777765432 2222233344455567777777777665


Q ss_pred             CC---CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          576 PV---KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       576 ~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                      ..   |+ ...+..+..++...|+.++|...++++...  .|+. .....+...+...|  +.|...++.+.+.....+.
T Consensus       433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~  508 (553)
T PRK12370        433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN  508 (553)
T ss_pred             HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence            42   32 334556666677777777777777776553  4433 33444445556666  3666666666554343443


Q ss_pred             hhHHHHHHHHHhhcCCHHHHHHH
Q 047571          651 EEHYLIMIDILTRFGRIEEAHRF  673 (681)
Q Consensus       651 ~~~~~~l~~~~~~~g~~~~A~~~  673 (681)
                      ...+..+  .|.-.|+-+.|..+
T Consensus       509 ~~~~~~~--~~~~~g~~~~~~~~  529 (553)
T PRK12370        509 NPGLLPL--VLVAHGEAIAEKMW  529 (553)
T ss_pred             CchHHHH--HHHHHhhhHHHHHH
Confidence            2223333  33334555555544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.98  E-value=4e-05  Score=77.59  Aligned_cols=397  Identities=11%  Similarity=0.072  Sum_probs=219.6

Q ss_pred             CCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 047571          240 GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR---DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTI  316 (681)
Q Consensus       240 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  316 (681)
                      .+.-|..+|..|.-++.+.|+++.+-+.|++...-   ....|+.+...+...|.-..|..+++.-....-.|+..+...
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            34556677777777778888888888888775542   445677777788888887788887776554433343333222


Q ss_pred             H-HHHHhh-hhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHh----
Q 047571          317 L-LPVIGE-AWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVS----  390 (681)
Q Consensus       317 l-l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----  390 (681)
                      + -..|.. .+..+++...-..+....+.               ..+.+             ....|-.+.-+|..    
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~---------------~~~~l-------------~~~~~l~lGi~y~~~A~~  449 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGG---------------QRSHL-------------KPRGYLFLGIAYGFQARQ  449 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhh---------------hhhhh-------------hhhHHHHHHHHHHhHhhc
Confidence            2 222221 23333333333333321000               00000             11222222222211    


Q ss_pred             -------CCChHHHHHHHHHHHHcC-cCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571          391 -------NGRLEQALRSIAWMQQEG-FRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG  462 (681)
Q Consensus       391 -------~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  462 (681)
                             .....++++.+++..+.+ -.|+...|..+  -++..++++.|.+..++..+.+-..+...|..+.-.+...+
T Consensus       450 a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k  527 (799)
T KOG4162|consen  450 ANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK  527 (799)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence                   112345556666655443 33433333332  23445567777777777776655666666766666666777


Q ss_pred             ChHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHh---------------------CCC-----CC-
Q 047571          463 VLDYSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQL---------------------SKH-----RP-  512 (681)
Q Consensus       463 ~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------------------~g~-----~p-  512 (681)
                      ++.+|+.+.+...+  ++ -.....-+..-..-++.++++.....+..                     .|+     .| 
T Consensus       528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~  607 (799)
T KOG4162|consen  528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT  607 (799)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence            77777776655432  11 10000001111112333333333222211                     000     00 


Q ss_pred             -CHHHHHHHHHHhcccc---chHHHHHHHHHHHHcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHHhhhCCCCC-
Q 047571          513 -DSVAMARMLSVSGQLK---ALKLGKEIHGQVLKKDFASVP--------FVAAENIKMYGMCGFLECAKLVFDAVPVKG-  579 (681)
Q Consensus       513 -~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-  579 (681)
                       ...++..+..-....+   ..+..      +.+....|.+        ..|......+.+.++.++|...+.+...-+ 
T Consensus       608 ~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~  681 (799)
T KOG4162|consen  608 DAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP  681 (799)
T ss_pred             ccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch
Confidence             1112222211111000   00000      1111112222        234455677788888899988877776633 


Q ss_pred             --hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHH--HHHHhhhcCCCCC-ChhH
Q 047571          580 --SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACR--IFNVMSRGYKIEA-LEEH  653 (681)
Q Consensus       580 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~-~~~~  653 (681)
                        ...|......+...|+.++|.+.|.....  +.| ++.+...+...+.+.|+..-|..  ++..+.+   +.| +.+.
T Consensus       682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~ea  756 (799)
T KOG4162|consen  682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEA  756 (799)
T ss_pred             hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHH
Confidence              44566666777889999999999999888  456 56788899999999998888877  8887765   344 4789


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          654 YLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       654 ~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      |..++.++-+.|+.++|.+.|+..
T Consensus       757 W~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  757 WYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHH
Confidence            999999999999999999988753

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.96  E-value=1.3e-07  Score=94.31  Aligned_cols=202  Identities=17%  Similarity=0.108  Sum_probs=127.1

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHh-----CC-
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQ-----G-IPVNVT-TFNALITACVRTRSLVEGRLIHTHIRIN-----GL-  138 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-  138 (681)
                      ..+...+...|..+|+++.|+.++++..+.     | ..|... ..+.+...|...+++.+|..+|+.+...     |. 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            345666899999999999999999998654     2 123333 3445777888899999999999998754     21 


Q ss_pred             CC-chhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCC-CCChh-hHHH
Q 047571          139 EN-NGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGV-QLNVY-TFSC  215 (681)
Q Consensus       139 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~-~~~~  215 (681)
                      .| -..+++.|..+|.+.|++++|...++                          .|++++++  ..|. .|... -++.
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e--------------------------~Al~I~~~--~~~~~~~~v~~~l~~  330 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCE--------------------------RALEIYEK--LLGASHPEVAAQLSE  330 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHH--------------------------HHHHHHHH--hhccChHHHHHHHHH
Confidence            22 23567777788999999999988665                          45666665  2222 22222 3455


Q ss_pred             HHHHhhccCchhhhHHHHHHHHHhC---CCCC----cHHHhHHHHHHHhcCChHHHHHHHhccCCC-----------Chh
Q 047571          216 VIKSFAGASALMQGLKTHALLIKNG---FVDY----LILRTSLIDMYFKCGKIKLARRVFDETGDR-----------DIV  277 (681)
Q Consensus       216 ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~  277 (681)
                      +...++..+++++|..+++...+.-   +.++    ..+++.|...|...|++++|.++++++...           ...
T Consensus       331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~  410 (508)
T KOG1840|consen  331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK  410 (508)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence            6667777888888888777554321   1111    245666666666666666666666554321           112


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHH
Q 047571          278 VWGSMIAGFAHNRLRWEALDCARW  301 (681)
Q Consensus       278 ~~~~li~~~~~~~~~~~a~~~~~~  301 (681)
                      .++.|...|.+.+++.+|.++|.+
T Consensus       411 ~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  411 PLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHH
Confidence            344455555555555555555544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=3.3e-06  Score=75.03  Aligned_cols=320  Identities=12%  Similarity=0.007  Sum_probs=213.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH-HHHHHhh
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT-KLVKMYT  153 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~  153 (681)
                      +...+..+.+..++.+|++++....++. +.+......+..+|....++..|-..++++-..  .|...-|. .-.+.+-
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            5667888889999999999999998875 347788888889999999999999999998755  34443332 2345566


Q ss_pred             cCCChhHHHHhhhhcCCC-CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHH
Q 047571          154 SCGSFEDAEKVFDESSSE-SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKT  232 (681)
Q Consensus       154 ~~g~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  232 (681)
                      +.+.+.+|+++...|... +...-..-+.+..+...+++..+..+.++....|   +..+.+.......+.|+.+.|.+-
T Consensus        90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence            778999999999888763 3333334455555555558888888888754322   333333334445689999999999


Q ss_pred             HHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-----------------Ch---------------hhHH
Q 047571          233 HALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-----------------DI---------------VVWG  280 (681)
Q Consensus       233 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------~~---------------~~~~  280 (681)
                      |+...+-+--.....|+.-+ ++.+.|+.+.|++...++.++                 |+               ..+|
T Consensus       167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN  245 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN  245 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence            99988855444456777554 455778899999888776431                 21               1233


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh
Q 047571          281 SMIAGFAHNRLRWEALDCARWMIRE-GIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK  359 (681)
Q Consensus       281 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  359 (681)
                      .-...+.+.|+++.|.+-+-+|.-+ ....|++|...+.-.- ..+++....+-+..+.....  -...++..++-.||+
T Consensus       246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP--fP~ETFANlLllyCK  322 (459)
T KOG4340|consen  246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP--FPPETFANLLLLYCK  322 (459)
T ss_pred             hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC--CChHHHHHHHHHHhh
Confidence            3334456788999998888887533 3445777776543221 22445555555666655523  334577888889999


Q ss_pred             cCCHHHHHHHHhhcCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 047571          360 CRDMNSAWRVFYETEER-----NEILWTALMSGYVSNGRLEQALRSIAWM  404 (681)
Q Consensus       360 ~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m  404 (681)
                      +.-++.|-+++.+-...     +...|+.|=..-...-..++|.+-++.+
T Consensus       323 Neyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  323 NEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             hHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999888775543     3444443322222334566666555544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.91  E-value=2.4e-05  Score=81.17  Aligned_cols=547  Identities=12%  Similarity=0.028  Sum_probs=272.7

Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhh
Q 047571           88 LKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDE  167 (681)
Q Consensus        88 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  167 (681)
                      ...|+..|-+..+..+. -...|..|...|+...+...|.+.|+...+.+ ..+..........|++..+++.|..+.-.
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            66666666666555321 34567777777777777777888888777665 55666667777778887788777777432


Q ss_pred             cCCCCC---ccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCC
Q 047571          168 SSSESV---YPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDY  244 (681)
Q Consensus       168 ~~~~~~---~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~  244 (681)
                      ..+...   ..+|..-++...-..++..+++.-|+...+.. +-|...|..+..+|...|++..|.++|.......  |+
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence            222111   12333333322222226666666666544322 1234466666666777777777777666554332  22


Q ss_pred             c-HHHhHHHHHHHhcCChHHHHHHHhccCCC---------C-hhhHHHHHHHHHhcCChHHHHHHHHHHH-------HcC
Q 047571          245 L-ILRTSLIDMYFKCGKIKLARRVFDETGDR---------D-IVVWGSMIAGFAHNRLRWEALDCARWMI-------REG  306 (681)
Q Consensus       245 ~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~-~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~g  306 (681)
                      . ...--..-..+..|.+.+|...+..+...         + ..++-.+...+.-.|-...|.+++++-.       ...
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~  708 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS  708 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence            1 11111222334556666666655543320         0 1111111111222222222222222111       111


Q ss_pred             --------------------CCCC---hhhHHHHHHHHhhhhhhcccc---hhhhhhhhccCCCCCchHHhHHHHHHHh-
Q 047571          307 --------------------IYPN---SVVLTILLPVIGEAWARKLGQ---EVHAYVLKNERYSEELFVRSSLVDMYCK-  359 (681)
Q Consensus       307 --------------------~~p~---~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  359 (681)
                                          +.||   ......+..-+...+....-.   --.+....+..+..+...|..+...|.+ 
T Consensus       709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~  788 (1238)
T KOG1127|consen  709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY  788 (1238)
T ss_pred             hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence                                1122   211111111111122111100   0000000111222234444444444433 


Q ss_pred             ---c----CCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCCh
Q 047571          360 ---C----RDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKAL  429 (681)
Q Consensus       360 ---~----~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  429 (681)
                         .    .+...|...+....+   .+..+||.|... ...|.+.-|..-|-+-... -+-...+|..+--.+.+..++
T Consensus       789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~  866 (1238)
T KOG1127|consen  789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDF  866 (1238)
T ss_pred             HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccH
Confidence               1    122345555544332   356677776654 4445565555555443332 123445566666667788889


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCChhHHHHH
Q 047571          430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------RNVISWTAMIDSCIENGRLDDALGV  501 (681)
Q Consensus       430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~  501 (681)
                      +.|...|...+... +.+...|-.........|+.-++..+|..-..        ++..-|-........+|+.++-+..
T Consensus       867 E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t  945 (1238)
T KOG1127|consen  867 EHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT  945 (1238)
T ss_pred             HHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence            99999888877654 33444554444445567777777777765221        3333333333444556665554444


Q ss_pred             HHHhHh---------CCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH---c--CCCCChhHHHHHHHHHHhcCCHHH
Q 047571          502 FRSMQL---------SKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK---K--DFASVPFVAAENIKMYGMCGFLEC  567 (681)
Q Consensus       502 ~~~m~~---------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~g~~~~  567 (681)
                      .+++-.         .|.+.+...|..........+.+..+.+...+.+.   .  ...-.+..-..+.+.++..|.++.
T Consensus       946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~ 1025 (1238)
T KOG1127|consen  946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFES 1025 (1238)
T ss_pred             hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhh
Confidence            333321         13344455666666666666666666665554432   1  111222233445667777788887


Q ss_pred             HHHHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          568 AKLVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       568 a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      |..-+..... .+..+-..-+.. .-.|+++++++.|++...-- -.-+ ++....++......+.-+.|...+-+...
T Consensus      1026 A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1026 AKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             HhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            7776655443 222222111211 34678888888888887631 1112 24455566666777777888777666654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.90  E-value=1.3e-06  Score=88.43  Aligned_cols=284  Identities=10%  Similarity=0.017  Sum_probs=186.6

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCC--C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhh------
Q 047571          354 VDMYCKCRDMNSAWRVFYETEER--N-EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCS------  424 (681)
Q Consensus       354 ~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------  424 (681)
                      ...+...|++++|++.+......  | ..........+.+.|+.++|..++..+.+.+  |+...|...+..+.      
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence            44556778888888888775543  3 3456667788888899999999999988874  66666655555443      


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCCCCc-chHHHHHHHHHhcCChhHHHHHH
Q 047571          425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL-DYSLKLFDEMEVRNV-ISWTAMIDSCIENGRLDDALGVF  502 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~  502 (681)
                      ...+.+...++++++...-  |.......+.-.+.....+ ..+..++..+....+ .+|+.+-..|....+.+-..+++
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence            1224566677777776543  3332222222222221122 223344444444444 34555555555455555555555


Q ss_pred             HHhHhC----C----------CCCCHH--HHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCH
Q 047571          503 RSMQLS----K----------HRPDSV--AMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFL  565 (681)
Q Consensus       503 ~~m~~~----g----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  565 (681)
                      ......    |          -.|+..  ++..+...|...|++++|.++.+..++..  |+ +..|..-.+.|-+.|++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence            554432    1          123332  44555667788899999999999988864  44 78888889999999999


Q ss_pred             HHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--H----HHH--HHHHHHHhccCCHHHH
Q 047571          566 ECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--H----FTF--KVLLSICNQAGFADEA  634 (681)
Q Consensus       566 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~----~~~--~~l~~~~~~~g~~~~A  634 (681)
                      ++|.+.++....   .|-..-+-.+..+.+.|++++|.+++......+..|-  .    ..|  .-...+|.+.|++..|
T Consensus       245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A  324 (517)
T PF12569_consen  245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA  324 (517)
T ss_pred             HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999998877   3455556677788899999999999998887765442  1    122  3456788999999999


Q ss_pred             HHHHHHhhh
Q 047571          635 CRIFNVMSR  643 (681)
Q Consensus       635 ~~~~~~~~~  643 (681)
                      +..|..+.+
T Consensus       325 Lk~~~~v~k  333 (517)
T PF12569_consen  325 LKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHH
Confidence            888877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.5e-05  Score=70.29  Aligned_cols=299  Identities=11%  Similarity=0.010  Sum_probs=167.9

Q ss_pred             CCCCChhhHHHHHHHhh--ccCchhhhHHHHHHHHHh-CCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHH
Q 047571          205 GVQLNVYTFSCVIKSFA--GASALMQGLKTHALLIKN-GFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGS  281 (681)
Q Consensus       205 g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  281 (681)
                      .+.|...+...-+.+++  -.++-..+.+++-.+... -++.++.....+...+...|+.++|...|+....-|..+...
T Consensus       189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~  268 (564)
T KOG1174|consen  189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEA  268 (564)
T ss_pred             ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhh
Confidence            33444444444444333  223333344444333332 244556667777777777777777777777655433322221


Q ss_pred             H---HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHH
Q 047571          282 M---IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYC  358 (681)
Q Consensus       282 l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  358 (681)
                      |   .-.+.+.|+.+....+...+.... .-....|-.-...+-...++..|..+-+..++.  -+.+...+-.--..+.
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~  345 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLI  345 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHH
Confidence            1   222345666666666666555421 011111111111222233344444444333332  1222222222234556


Q ss_pred             hcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHH-HHhh-ccCChhHHH
Q 047571          359 KCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVI-PVCS-QLKALNHGK  433 (681)
Q Consensus       359 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~  433 (681)
                      ..|+.++|.-.|+....  | +...|.-|+++|...|++.+|..+-++.... .+-+..+...+- ..|. ...--++|.
T Consensus       346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence            67788888777776553  2 6778888888888888888887766654432 223444444331 2222 223346777


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571          434 EIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      .+++...+.. +.-....+.+...+...|+.++++.+++....  +|....+.|.+.+...+.+++|++.|......
T Consensus       425 kf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  425 KFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            7777665543 23445667777888888888888888887654  78888888888888888888888888877764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.88  E-value=3.7e-05  Score=79.89  Aligned_cols=546  Identities=10%  Similarity=-0.049  Sum_probs=286.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCC---CCCccHHHHHHHHHHcCCcChhhHHHHH
Q 047571          122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSS---ESVYPWNALLRGAVIAGKKRYRGVLFNY  198 (681)
Q Consensus       122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~~a~~~~  198 (681)
                      +...+...|=+..+.. ..-...|..|...|+...+...|.+.|+..-+   .+..++......|+...  +++.|..+.
T Consensus       473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--~we~a~~I~  549 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--TWEEAFEIC  549 (1238)
T ss_pred             hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--cHHHHHHHH
Confidence            3555555555544443 33345788899999988899999999987654   45556888889999999  999998884


Q ss_pred             HHHHHcCCCCChhhHHH--HHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCCh
Q 047571          199 MKMRELGVQLNVYTFSC--VIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDI  276 (681)
Q Consensus       199 ~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  276 (681)
                      -..-+.. +.-...++.  .--.+...++...+..-|+...+.. +.|...|..+..+|.+.|++..|.++|.+...-++
T Consensus       550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP  627 (1238)
T KOG1127|consen  550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP  627 (1238)
T ss_pred             HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence            3322221 111112232  3334667888888888888777654 45778999999999999999999999987665333


Q ss_pred             h-hHHH--HHHHHHhcCChHHHHHHHHHHHHc------CCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhcc------
Q 047571          277 V-VWGS--MIAGFAHNRLRWEALDCARWMIRE------GIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNE------  341 (681)
Q Consensus       277 ~-~~~~--li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------  341 (681)
                      . .|..  ....-+..|.+.+|+..+......      +..--..++..+...+...|-...+..+++..++.-      
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            2 2222  223346678888888888766542      112223344444444444444344433333322210      


Q ss_pred             CCCCCchHHhHHHHH-------------------HH----hcCCH---H---HHHHHHhhcCC--CChhhHHHHHHHHHh
Q 047571          342 RYSEELFVRSSLVDM-------------------YC----KCRDM---N---SAWRVFYETEE--RNEILWTALMSGYVS  390 (681)
Q Consensus       342 ~~~~~~~~~~~l~~~-------------------~~----~~~~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~  390 (681)
                      ....+...|-.+-++                   +.    ..+..   +   -+.+.+-.-..  .+..+|..++..|.+
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr  787 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR  787 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence            111111111111111                   11    11111   0   00000000000  023334444433333


Q ss_pred             ----CC----ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571          391 ----NG----RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG  462 (681)
Q Consensus       391 ----~~----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  462 (681)
                          .|    +...|+..+.+-...  ..+...+...+......|++.-+...|-.-.... +....+|..+.-.+.+..
T Consensus       788 ~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~  864 (1238)
T KOG1127|consen  788 YFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ  864 (1238)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence                11    122444444444332  2333333344444455556666555554433332 344556666666677777


Q ss_pred             ChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHhH--h--CCCCCCHHHHHHHHHHhccccchHHHHH
Q 047571          463 VLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGVFRSMQ--L--SKHRPDSVAMARMLSVSGQLKALKLGKE  535 (681)
Q Consensus       463 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~--~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~  535 (681)
                      +++.|...|.....-   |...|-.........|+.-++..+|..--  .  .|--++..-+..........|+.+.-+.
T Consensus       865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~  944 (1238)
T KOG1127|consen  865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN  944 (1238)
T ss_pred             cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence            888888888777652   34455554444555677777777776521  1  1223332222222222233343333222


Q ss_pred             ----------HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHHH----HHHHHHcCCCh
Q 047571          536 ----------IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSITWTA----IIEAYGYNDLC  596 (681)
Q Consensus       536 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~----l~~~~~~~~~~  596 (681)
                                .++.... +.+.....|..........+.++.|..+..+...     -+...||.    +.+.++..|.+
T Consensus       945 t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen  945 TARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred             HhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence                      2222222 3334455666666666666666666655544322     33444553    33445556777


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571          597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      +.|...+.....   ..+.....+-+. ..-.|+++++.+.|++...-.+-..+ ......+.-+...+|..+.|+..+-
T Consensus      1024 e~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLf 1099 (1238)
T KOG1127|consen 1024 ESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLF 1099 (1238)
T ss_pred             hhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHH
Confidence            655443332111   112112111111 24578899999999988664444444 3445556666677888888888765


Q ss_pred             hccCC
Q 047571          676 MSSSL  680 (681)
Q Consensus       676 ~~~~~  680 (681)
                      +...+
T Consensus      1100 e~~~l 1104 (1238)
T KOG1127|consen 1100 EVKSL 1104 (1238)
T ss_pred             HHHHh
Confidence            55444

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.83  E-value=2.7e-06  Score=81.44  Aligned_cols=116  Identities=11%  Similarity=0.006  Sum_probs=65.0

Q ss_pred             CChHHHHHHHHHHHHcC-cCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571          392 GRLEQALRSIAWMQQEG-FRPD--VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       392 ~~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  468 (681)
                      +..+.++..+.++.... ..|+  ...|..+-..+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            34455555555555432 1121  2234444445566666666666666666543 334556666666666666666666


Q ss_pred             HHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571          469 KLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       469 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      ..|++..+  | +...|..+..++...|++++|++.+++..+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            66666543  2 2345555556666666666666666666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.83  E-value=7.8e-07  Score=85.12  Aligned_cols=234  Identities=12%  Similarity=0.001  Sum_probs=159.4

Q ss_pred             ccCChhHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHH
Q 047571          425 QLKALNHGKEIHAYAVKNQ-FLPN--VSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDA  498 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A  498 (681)
                      ..+..+.+..-+.++.... ..|+  ...|..+...|.+.|+.++|...|++..+  | +...|+.+...+...|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3345666777777766532 2222  34577778889999999999999998875  3 557899999999999999999


Q ss_pred             HHHHHHhHhCCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571          499 LGVFRSMQLSKHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV  577 (681)
Q Consensus       499 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  577 (681)
                      ...|++..+.  .|+ ..++..+..++...|++++|.+.++...+.+  |+..........+...++.++|...+++...
T Consensus       118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            9999999875  454 5577777888888999999999999998764  3322222223345567889999999965443


Q ss_pred             -CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          578 -KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG---GF--TP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       578 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                       .+...|.. .......|+...+ +.++.+.+.   ..  .| ....|..+...+.+.|++++|+..|++..+. . .|+
T Consensus       194 ~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~-~-~~~  269 (296)
T PRK11189        194 KLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN-N-VYN  269 (296)
T ss_pred             hCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-Cch
Confidence             22223331 2223335655544 344555432   11  12 3467889999999999999999999988863 3 334


Q ss_pred             -hhHHHHHHHHHhhcCC
Q 047571          651 -EEHYLIMIDILTRFGR  666 (681)
Q Consensus       651 -~~~~~~l~~~~~~~g~  666 (681)
                       .++-..++......++
T Consensus       270 ~~e~~~~~~e~~~~~~~  286 (296)
T PRK11189        270 FVEHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence             5555555555544443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.81  E-value=2.8e-07  Score=86.65  Aligned_cols=126  Identities=15%  Similarity=0.094  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhh---HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSIT---WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLS  623 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  623 (681)
                      .......+.+|.+.++++.|.+.++.+.+  .|...   ..+.+..+...+.+.+|..+|+++.+. +.+++.+.+.+..
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~  209 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAV  209 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence            34444455555555555555555555554  22111   111222222233566666666666554 3556666666666


Q ss_pred             HHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCH-HHHHHHHHhc
Q 047571          624 ICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRI-EEAHRFREMS  677 (681)
Q Consensus       624 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~  677 (681)
                      ++...|++++|.+++++..+.  .+-+..+...++-+..-.|+. +.+.++++++
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            666666666666666655432  111244555555555555555 4455555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.75  E-value=2.7e-05  Score=77.70  Aligned_cols=253  Identities=11%  Similarity=-0.082  Sum_probs=131.5

Q ss_pred             hhccCChhHHHHHHHHHHHhCCCCChhHHHH---HHHHHHhcCChHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChh
Q 047571          423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITS---LMIMYSKCGVLDYSLKLFDEMEV--RNV-ISWTAMIDSCIENGRLD  496 (681)
Q Consensus       423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~  496 (681)
                      +...|+++.|.++++...+.. +.+...+..   +.......+..+.+.+.++....  |+. .....+...+...|+++
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~  131 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD  131 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence            344566666666666655542 222222221   11111223444555555544222  111 22233444566677777


Q ss_pred             HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CC--hhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571          497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SV--PFVAAENIKMYGMCGFLECAKLVFD  573 (681)
Q Consensus       497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~  573 (681)
                      +|...+++..+.. +.+...+..+...+...|++++|...++...+.... ++  ...+..+...+...|++++|..+++
T Consensus       132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7777777776653 333445556666666777777777777766654221 22  1234456777777888888888887


Q ss_pred             hCCC--CChhhH----H--HHHHHHHcCCChHHHHHH--H-HHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571          574 AVPV--KGSITW----T--AIIEAYGYNDLCQEALSL--F-DKMRNGGF-TPNHFTFKVLLSICNQAGFADEACRIFNVM  641 (681)
Q Consensus       574 ~~~~--~~~~~~----~--~l~~~~~~~~~~~~a~~~--~-~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  641 (681)
                      +...  +....+    +  .++.-+...|..+.+.++  + ..-..... ............++...|+.++|.+.++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l  290 (355)
T cd05804         211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAAL  290 (355)
T ss_pred             HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            7643  211111    1  222333334433333332  1 11111100 112223335677788889999999999887


Q ss_pred             hhcCCC------C-CChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          642 SRGYKI------E-ALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       642 ~~~~~~------~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .....-      . ..........-++.+.|+.++|.+.+...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a  333 (355)
T cd05804         291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV  333 (355)
T ss_pred             HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            653111      0 01233333344566889999999888754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.71  E-value=7.2e-06  Score=70.56  Aligned_cols=187  Identities=10%  Similarity=0.030  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS  459 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  459 (681)
                      +...|.-+|...|+...|..-+++..+.. +-+..++..+...|.+.|+.+.|.+-|+...+.. +-+..+.|....-+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            34456667777888888888777777752 2234456666667777777777777777777654 345566667777777


Q ss_pred             hcCChHHHHHHHhhCCC-CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571          460 KCGVLDYSLKLFDEMEV-RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK  534 (681)
Q Consensus       460 ~~g~~~~a~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  534 (681)
                      ..|++++|...|++... |+    ..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence            77777777777776654 32    3466667777777777777777777776653 222334555555566666666666


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047571          535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL  570 (681)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  570 (681)
                      .+++.....+. ++....-..|+.-...|+.+.+.+
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~  228 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR  228 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence            66666655543 454444444444444444444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.69  E-value=2.5e-05  Score=77.98  Aligned_cols=254  Identities=8%  Similarity=-0.012  Sum_probs=129.0

Q ss_pred             HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH---HHHHhhccCChhHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 047571          387 GYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT---VIPVCSQLKALNHGKEIHAYAVKNQFLPN-VSIITSLMIMYSKCG  462 (681)
Q Consensus       387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  462 (681)
                      .+...|++++|.+.+++..+.. +.|...+..   ........+....+.+.+..  .....|+ ......+...+...|
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence            3455667777777776666542 112222221   11111123334444444333  1111222 223334445666677


Q ss_pred             ChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCH--HHHHHHHHHhccccchHHHHHH
Q 047571          463 VLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPDS--VAMARMLSVSGQLKALKLGKEI  536 (681)
Q Consensus       463 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~~  536 (681)
                      ++++|...+++..+  | +...+..+...+...|++++|...+++.....- .|+.  ..+..+...+...|+.++|..+
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            77777777766654  2 344556666667777777777777776655321 1222  2334555666667777777777


Q ss_pred             HHHHHHcCC-CCChhHH-H--HHHHHHHhcCCHHHHHHH---hhhCCC--C-ChhhHH--HHHHHHHcCCChHHHHHHHH
Q 047571          537 HGQVLKKDF-ASVPFVA-A--ENIKMYGMCGFLECAKLV---FDAVPV--K-GSITWT--AIIEAYGYNDLCQEALSLFD  604 (681)
Q Consensus       537 ~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~--~-~~~~~~--~l~~~~~~~~~~~~a~~~~~  604 (681)
                      ++....... .+..... +  .++..+...|..+.+.+.   ......  + ....+.  ....++...|+.++|..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            776643322 1111111 1  222333333322222221   111000  1 111222  45667778999999999999


Q ss_pred             HHHhCCCC-------C-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          605 KMRNGGFT-------P-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       605 ~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+......       . ..........++...|++++|.+.+.....
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88764322       1 122233344456788999999999987765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.65  E-value=0.0022  Score=73.11  Aligned_cols=257  Identities=14%  Similarity=0.025  Sum_probs=137.4

Q ss_pred             HHHhCCChHHHHHHHHHHHHcCcCCCH----HHHHHHHHHhhccCChhHHHHHHHHHHHhCC---CC--ChhHHHHHHHH
Q 047571          387 GYVSNGRLEQALRSIAWMQQEGFRPDV----VTVATVIPVCSQLKALNHGKEIHAYAVKNQF---LP--NVSIITSLMIM  457 (681)
Q Consensus       387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~  457 (681)
                      .+...|+++.|...+++..+.-...+.    ...+.+...+...|+++.|...+.......-   .+  ...++..+...
T Consensus       461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            344566666666666665442111111    1223333345556677766666666543211   11  11233444555


Q ss_pred             HHhcCChHHHHHHHhhCCC-------CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCC--HHHHHHHHH
Q 047571          458 YSKCGVLDYSLKLFDEMEV-------RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSK--HRPD--SVAMARMLS  522 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~  522 (681)
                      +...|++++|...+++...       ++    ...+..+...+...|++++|...+++.....  ..+.  ...+..+..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            6666777777666655432       11    1123334445556677777777776654421  1111  223333444


Q ss_pred             HhccccchHHHHHHHHHHHHcC--CCCChhH----HHHHHHHHHhcCCHHHHHHHhhhCCCCC---h----hhHHHHHHH
Q 047571          523 VSGQLKALKLGKEIHGQVLKKD--FASVPFV----AAENIKMYGMCGFLECAKLVFDAVPVKG---S----ITWTAIIEA  589 (681)
Q Consensus       523 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~l~~~  589 (681)
                      .....|+.+.|...++......  .......    ....+..+...|+.+.|...+.....+.   .    ..+..+..+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence            5556677777777776664421  1100000    0111234455678888888876655422   1    113456666


Q ss_pred             HHcCCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          590 YGYNDLCQEALSLFDKMRNG----GFTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       590 ~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +...|++++|...+++....    |..++ ..+...+..++.+.|+.++|.+.+.+..+
T Consensus       701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77788888888888877653    22222 34566667778888888888888887765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.65  E-value=0.00036  Score=79.40  Aligned_cols=322  Identities=13%  Similarity=0.044  Sum_probs=205.7

Q ss_pred             HHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCc------CCCHH--HHHHHHHHhh
Q 047571          357 YCKCRDMNSAWRVFYETEE----RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGF------RPDVV--TVATVIPVCS  424 (681)
Q Consensus       357 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~p~~~--~~~~ll~~~~  424 (681)
                      ....|+++.+..++..+..    .+..........+...|++++|...+....+.--      .+...  ....+-..+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            4455777777777766532    1333334445556678899999988887754311      11111  1112223456


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC--cchHHHHHHHHHh
Q 047571          425 QLKALNHGKEIHAYAVKNQFLPNV----SIITSLMIMYSKCGVLDYSLKLFDEMEV-------RN--VISWTAMIDSCIE  491 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~  491 (681)
                      ..|+++.|...++.....-...+.    ...+.+...+...|++++|...+++...       +.  ..++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            789999999999987763211121    2345566677889999999999887653       11  1244556677888


Q ss_pred             cCChhHHHHHHHHhHhC----CCC--C-CHHHHHHHHHHhccccchHHHHHHHHHHHHc--CCCC--ChhHHHHHHHHHH
Q 047571          492 NGRLDDALGVFRSMQLS----KHR--P-DSVAMARMLSVSGQLKALKLGKEIHGQVLKK--DFAS--VPFVAAENIKMYG  560 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~  560 (681)
                      .|++++|...+++....    |..  + ....+..+...+...|+++.|...+.+....  ...+  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999998876552    221  1 1223444455566779999999998877653  1112  2344555677888


Q ss_pred             hcCCHHHHHHHhhhCCC----CC-hhhH-----HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhc
Q 047571          561 MCGFLECAKLVFDAVPV----KG-SITW-----TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQ  627 (681)
Q Consensus       561 ~~g~~~~a~~~~~~~~~----~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~  627 (681)
                      ..|+.++|.+.++....    .+ ...+     ...+..+...|+.+.|..++.+..........   ..+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            89999999988877643    11 1111     11223445588999999998776543211111   124567778889


Q ss_pred             cCCHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          628 AGFADEACRIFNVMSRG---YKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       628 ~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .|++++|...+++....   .+..++ ..+...+..++.+.|+.++|.+.+.+..
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al  758 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL  758 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999987542   233332 4567778889999999999999887653

>PF12854 PPR_1: PPR repeat

Probab=98.64  E-value=5e-08  Score=57.52  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          646 KIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       646 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      |+.||..+|+.||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            556666666666666666666666666666654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=0.00013  Score=65.31  Aligned_cols=235  Identities=11%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             cCCHHHHHHHHhhcCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CcCCCHHHHHHHHHHhhccCChhHHHHHHH
Q 047571          360 CRDMNSAWRVFYETEE-RNEILWTALMSGYVSNGRLEQALRSIAWMQQE-GFRPDVVTVATVIPVCSQLKALNHGKEIHA  437 (681)
Q Consensus       360 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  437 (681)
                      .+++..+..+++.... .+..+.+...-...+.|+++.|.+-|+...+. |..| ...|+..+.. .+.++.+.|.+...
T Consensus       125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iS  202 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHIS  202 (459)
T ss_pred             cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHH
Confidence            4566666666666653 34444444444456777888888877776654 3443 3455544433 45577777888887


Q ss_pred             HHHHhCCCCChhHH----HHHHHHHHhcCCh-HHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCC-CC
Q 047571          438 YAVKNQFLPNVSII----TSLMIMYSKCGVL-DYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSK-HR  511 (681)
Q Consensus       438 ~~~~~~~~~~~~~~----~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~  511 (681)
                      ++++.|++..+..-    .-.++.- ..|+. ..+..-+       +..+|.-...+.+.|+++.|.+-+-+|--+. -.
T Consensus       203 EIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e  274 (459)
T KOG4340|consen  203 EIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE  274 (459)
T ss_pred             HHHHhhhhcCCccCccceeccCchh-cccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc
Confidence            77777654222110    0000000 00000 0000000       0112222233445566666666666553221 23


Q ss_pred             CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC-----ChhhHHHH
Q 047571          512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK-----GSITWTAI  586 (681)
Q Consensus       512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l  586 (681)
                      .|.+|...+.-.- ..+++....+-+.-+...+. ..+.++..++-.||+..-++-|-.++.+-...     +...|+. 
T Consensus       275 lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-  351 (459)
T KOG4340|consen  275 LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-  351 (459)
T ss_pred             CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-
Confidence            3445544332111 11223333333344444322 34566777777777777777777777654441     2233333 


Q ss_pred             HHHHH-cCCChHHHHHHHHHHH
Q 047571          587 IEAYG-YNDLCQEALSLFDKMR  607 (681)
Q Consensus       587 ~~~~~-~~~~~~~a~~~~~~m~  607 (681)
                      +.++. -.-..++|.+-++.+.
T Consensus       352 LdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  352 LDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHH
Confidence            33332 3445666665555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.60  E-value=2.7e-06  Score=80.07  Aligned_cols=152  Identities=13%  Similarity=0.132  Sum_probs=107.1

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhh----ccCCh
Q 047571          354 VDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCS----QLKAL  429 (681)
Q Consensus       354 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~  429 (681)
                      ...+...|++++|++++...  .+.......+..+++.++++.|.+.++.|.+..  .| .+...+..++.    -.+.+
T Consensus       109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~  183 (290)
T PF04733_consen  109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY  183 (290)
T ss_dssp             HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence            34556678888887777665  455666777888899999999999999988752  33 44444444432    23468


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCh-hHHHHHHHHh
Q 047571          430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRL-DDALGVFRSM  505 (681)
Q Consensus       430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~-~~A~~~~~~m  505 (681)
                      ..|..+|+++.+. +.+++.+.+.+..++...|++++|.+++.+....   +..+...++.+....|+. +.+.+.+.++
T Consensus       184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            9999999997653 5678888999999999999999999999987763   444555667777777877 6677888888


Q ss_pred             HhCCCCCC
Q 047571          506 QLSKHRPD  513 (681)
Q Consensus       506 ~~~g~~p~  513 (681)
                      ...  .|+
T Consensus       263 ~~~--~p~  268 (290)
T PF04733_consen  263 KQS--NPN  268 (290)
T ss_dssp             HHH--TTT
T ss_pred             HHh--CCC
Confidence            864  454

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12854 PPR_1: PPR repeat

Probab=98.59  E-value=8.6e-08  Score=56.49  Aligned_cols=34  Identities=32%  Similarity=0.527  Sum_probs=30.2

Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          609 GGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       609 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      .|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4788999999999999999999999999999874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=0.00026  Score=68.97  Aligned_cols=234  Identities=12%  Similarity=-0.015  Sum_probs=139.5

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH-------HH
Q 047571          381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII-------TS  453 (681)
Q Consensus       381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~  453 (681)
                      ...+.++..+..++..|++-+....+..  -+..-++..-.++...|.+..+...-...++.|.. ...-|       ..
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            4455666667777777777777766643  23333344444567777766666665555554421 11222       22


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHH
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKL  532 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~  532 (681)
                      +..+|.+.++++.++..|++...+-..     -....+....+++++..+...-.  .|... -...-...+.+.|++..
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHH
Confidence            344666677888888888775431110     11122333445555555444332  23321 11222455667889999


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          533 GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG---SITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      |...|+++++.+ +-|+..|+...-+|.+.|.+..|..-.+...+.+   ...|.-=..++....++++|++.|++.++.
T Consensus       377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999988876 5568888888889999999888888777666633   334444445555667888888888888885


Q ss_pred             CCCCCHHHHHHHHHHHhc
Q 047571          610 GFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       610 g~~p~~~~~~~l~~~~~~  627 (681)
                        .|+..-+..-+.-|..
T Consensus       456 --dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  456 --DPSNAEAIDGYRRCVE  471 (539)
T ss_pred             --CchhHHHHHHHHHHHH
Confidence              4654444433444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=1.5e-05  Score=77.89  Aligned_cols=245  Identities=15%  Similarity=0.075  Sum_probs=152.5

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHH
Q 047571          425 QLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGV  501 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~  501 (681)
                      +.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+-   |....-.|.-.|...|.-.+|++.
T Consensus       297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence            3444555555555444443 334445555555555555555555555555442   233444444455555555566665


Q ss_pred             HHHhHhCCCC--------CCHHHHHHHHHHhccccchHHHHHHH-HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571          502 FRSMQLSKHR--------PDSVAMARMLSVSGQLKALKLGKEIH-GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVF  572 (681)
Q Consensus       502 ~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  572 (681)
                      ++.-.....+        ++...-..  .............++| +.....+..+|+.+...|.-+|--.|++++|...|
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            5554332100        00000000  1111222233334444 44445565689999999999999999999999999


Q ss_pred             hhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhh---c-
Q 047571          573 DAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSR---G-  644 (681)
Q Consensus       573 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-  644 (681)
                      +.+..  | |...||-|...++...+.++|+..|++.++  +.|+- .....|.-+|...|.+++|.+.|-....   . 
T Consensus       454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            98877  4 578999999999999999999999999999  67864 5566778899999999999998876532   1 


Q ss_pred             ----CCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          645 ----YKIEALEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       645 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                          -...++..+|..|=.++.-.++.|-+.+..
T Consensus       532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             cccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence                012223467777777777777777555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=5.6e-06  Score=83.02  Aligned_cols=219  Identities=14%  Similarity=0.066  Sum_probs=161.9

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571          444 FLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV  523 (681)
Q Consensus       444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  523 (681)
                      ++|-...-..+...+...|-...|..+|+++.     .|...|.+|+..|+..+|..+..+..++  +||...|..+.+.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV  466 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence            35555566667788888899999999988754     4677788888889888888888887773  7888888888888


Q ss_pred             hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHcCCChHHHH
Q 047571          524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG---SITWTAIIEAYGYNDLCQEAL  600 (681)
Q Consensus       524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~  600 (681)
                      ..+..-+++|.++.+.....       .-.++.....+.++++++.+.|+.-..-+   ..+|-.+..+..+.++++.|.
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            87777788888887765432       22233333344688888888888665522   557777777777888888888


Q ss_pred             HHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          601 SLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       601 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      +.|..-+..  .| +...|+.+..+|.+.|+-.+|...+.+..+- + .-+...|....-...+-|.+++|++.+.+|..
T Consensus       540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            888888873  56 5677888888888888888888888887764 3 22334555556667888888888888887765


Q ss_pred             C
Q 047571          680 L  680 (681)
Q Consensus       680 ~  680 (681)
                      +
T Consensus       616 ~  616 (777)
T KOG1128|consen  616 L  616 (777)
T ss_pred             h
Confidence            4

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.40  E-value=1.7e-05  Score=73.69  Aligned_cols=182  Identities=12%  Similarity=-0.004  Sum_probs=111.0

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH----HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh--h
Q 047571          477 RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS----VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP--F  550 (681)
Q Consensus       477 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  550 (681)
                      .....+..+...+...|++++|...|+++...  .|+.    ..+..+..++...|+++.|...++.+.+.......  .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            34556777778888999999999999988775  3332    34566667777888888888888888765422111  1


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHhhhCCC--CChh-hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047571          551 VAAENIKMYGMC--------GFLECAKLVFDAVPV--KGSI-TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFK  619 (681)
Q Consensus       551 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  619 (681)
                      .+..+..++...        |+.++|.+.++.+..  |+.. .+..+...              ..+...   . .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHH
Confidence            333334444332        445555555554433  2211 11111000              000000   0 00112


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          620 VLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .+...+.+.|++.+|+..++...+...-.| ....+..++.++.+.|+.++|..+++.+.
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455667888999999999998877644344 35778888999999999999998887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.35  E-value=0.0036  Score=61.26  Aligned_cols=167  Identities=11%  Similarity=0.107  Sum_probs=123.0

Q ss_pred             hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571          495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFAS-VPFVAAENIKMYGMCGFLECAKLVFD  573 (681)
Q Consensus       495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~  573 (681)
                      .+....+++++...-..--..+|...++.-.+..-+..|+.+|.++.+.+..+ +..++++++..||. ++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            45556666666554322223467888888888889999999999999987776 67888888887764 67788999998


Q ss_pred             hCCC--CChhhH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC--
Q 047571          574 AVPV--KGSITW-TAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYK--  646 (681)
Q Consensus       574 ~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--  646 (681)
                      --..  +|...| ...+.-+...++-..|..+|++....++.|+  ...|..+++-=..-|++..+.++-+++...+.  
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~  505 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD  505 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence            6555  665544 4567777788888899999999999877774  47899999988999999999999888876555  


Q ss_pred             CCCChhHHHHHHHHHh
Q 047571          647 IEALEEHYLIMIDILT  662 (681)
Q Consensus       647 ~~~~~~~~~~l~~~~~  662 (681)
                      ..+....-..+++-|.
T Consensus       506 qe~~~~~~~~~v~RY~  521 (656)
T KOG1914|consen  506 QEYEGNETALFVDRYG  521 (656)
T ss_pred             hcCCCChHHHHHHHHh
Confidence            4433333444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.0002  Score=63.20  Aligned_cols=135  Identities=14%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHH
Q 047571          488 SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPF-VAAENIKMYGMCGFLE  566 (681)
Q Consensus       488 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~  566 (681)
                      .|+..|++++|++..+...      +......=+..+.+..+.+.|.+.++.|.+.+-..+.. ...+.+....-.+++.
T Consensus       117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence            3555666666666555421      11111112223334444555555555554432111100 1122222222234444


Q ss_pred             HHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 047571          567 CAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG  629 (681)
Q Consensus       567 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g  629 (681)
                      +|.-+|+++..   |+..+.+-...++...|++++|..++++..... .-++.+...++-.-...|
T Consensus       191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG  255 (299)
T ss_pred             hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence            55555555444   333333444444444555555555555554432 223444444433333333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.33  E-value=0.00014  Score=78.60  Aligned_cols=218  Identities=13%  Similarity=0.112  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CC-cchHHHHHH
Q 047571          414 VTVATVIPVCSQLKALNHGKEIHAYAVKN-QFLP---NVSIITSLMIMYSKCGVLDYSLKLFDEMEV-RN-VISWTAMID  487 (681)
Q Consensus       414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-~~~~~~li~  487 (681)
                      ..|-.-|......++.++|.++.+++... +++-   -..+|.++++.-..-|.-+...++|+++.+ -| ...|..|..
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            44555666667777777777777776542 2221   223566666666666777777777877766 23 346777777


Q ss_pred             HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHH
Q 047571          488 SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SVPFVAAENIKMYGMCGFLE  566 (681)
Q Consensus       488 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~  566 (681)
                      .|.+.+..++|-++++.|.++ +.-....|...+..+.+..+-+.|..++.+.++.=.+ -........+++-.++|+.+
T Consensus      1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            888888888888888888765 2345566777777777777777888887777664211 23555566677777888888


Q ss_pred             HHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHH
Q 047571          567 CAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH--FTFKVLLSICNQAGFAD  632 (681)
Q Consensus       567 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~  632 (681)
                      ++..+|+....  | -...|+.+|+.-.++|+.+.+..+|++....++.|-.  ..|.-.+..=-+.|+-+
T Consensus      1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            88888887766  2 3677888888888888888888888888888777732  33444444333445533

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.33  E-value=0.0001  Score=65.14  Aligned_cols=122  Identities=14%  Similarity=-0.039  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSI  624 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~  624 (681)
                      .......+....+.|++.+|...+.+...   +|...|+.+..+|.+.|+.+.|..-|.+..+.  .| ++..++.+.-.
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms  177 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMS  177 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHH
Confidence            33444455555555666666665555544   34555666666666666666666666665553  33 44555555555


Q ss_pred             HhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          625 CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      +.-.|+.+.|..++.....  ...-|...-..|..+....|++++|..+.
T Consensus       178 ~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         178 LLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            5566666666666555443  12223444555555555666666665544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.32  E-value=7.2e-05  Score=75.35  Aligned_cols=227  Identities=9%  Similarity=-0.011  Sum_probs=163.5

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCCh
Q 047571          418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRL  495 (681)
Q Consensus       418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~  495 (681)
                      .+...+.+.|-...|..+++...         .+.-++.+|...|+..+|..+..+-.+  ||...|..+.+......-+
T Consensus       403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y  473 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY  473 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence            44455666777777877777644         355578888888888888888765544  6777888888777766678


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ++|.++.+..-.+       .-..+.......++++++.+.++.-.+.+ .....+|-.+..++.+.++++.|...|...
T Consensus       474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            8888887765432       11111111223578888888887766643 334677888888888999999999998877


Q ss_pred             CC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChh
Q 047571          576 PV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE  652 (681)
Q Consensus       576 ~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  652 (681)
                      ..  || ...||.+-.+|.+.|+-.+|...+++..+-+ .-+...|...+....+.|.+++|++.+.++........|..
T Consensus       546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~  624 (777)
T KOG1128|consen  546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE  624 (777)
T ss_pred             hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence            66  55 7789999999999999999999999999876 55666777777778899999999999988865433333445


Q ss_pred             HHHHHHHHHh
Q 047571          653 HYLIMIDILT  662 (681)
Q Consensus       653 ~~~~l~~~~~  662 (681)
                      +...++....
T Consensus       625 vl~~iv~~~~  634 (777)
T KOG1128|consen  625 VLLIIVRTVL  634 (777)
T ss_pred             hhHHHHHHHH
Confidence            5555544443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.30  E-value=2.4e-05  Score=76.16  Aligned_cols=125  Identities=10%  Similarity=0.036  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA  631 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~  631 (681)
                      ...++..+...++++.|..+|+++...++...-.++..+...++-.+|++++++..... +-+...+..-...|.+.+++
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence            34455555666777777777777776555555567777777788888888888888642 44666777777778888888


Q ss_pred             HHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571          632 DEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSSSL  680 (681)
Q Consensus       632 ~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  680 (681)
                      +.|+++.+++.+.   .|+ ..+|..|..+|.+.|+++.|+-.++.+|.+
T Consensus       251 ~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  251 ELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            8888888877753   554 678888888888888898888888888854

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.28  E-value=1.6e-05  Score=66.64  Aligned_cols=104  Identities=12%  Similarity=-0.045  Sum_probs=81.7

Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047571          535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF  611 (681)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~  611 (681)
                      ..++..++    .++..+..+...+...|++++|...|+....   .+...|..+..++...|++++|+..|++..+.+ 
T Consensus        14 ~~~~~al~----~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-   88 (144)
T PRK15359         14 DILKQLLS----VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-   88 (144)
T ss_pred             HHHHHHHH----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            44444444    3344466678888888999999999887766   346778888888899999999999999998853 


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          612 TPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       612 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +.+...+..+..++...|++++|++.|+...+
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~  120 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK  120 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45788888888899999999999999987765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.25  E-value=0.0015  Score=59.93  Aligned_cols=91  Identities=13%  Similarity=0.168  Sum_probs=65.7

Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHH---HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH-HHHHhhcc
Q 047571          351 SSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMS---GYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT-VIPVCSQL  426 (681)
Q Consensus       351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~  426 (681)
                      ..+-..+...|.+..|+.-|....+.|+..|.++.+   .|...|+...|+.-+....+.  +||-..-.. --..+.+.
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence            457777778888888888888888887777766653   577788888888888777764  666543221 12246778


Q ss_pred             CChhHHHHHHHHHHHhC
Q 047571          427 KALNHGKEIHAYAVKNQ  443 (681)
Q Consensus       427 ~~~~~a~~~~~~~~~~~  443 (681)
                      |.++.|..=|+...+..
T Consensus       120 Gele~A~~DF~~vl~~~  136 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHE  136 (504)
T ss_pred             ccHHHHHHHHHHHHhcC
Confidence            88888888888877754

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.25  E-value=0.00024  Score=76.76  Aligned_cols=217  Identities=10%  Similarity=0.032  Sum_probs=171.3

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHH
Q 047571          445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVA  516 (681)
Q Consensus       445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  516 (681)
                      +.+...|-..|.-....++.++|++++++...        .-...|.++++.-...|.-+...++|+++.+.  --....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            44556788888888999999999999998764        12246888888777788888889999999874  223456


Q ss_pred             HHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC---hhhHHHHHHHHH
Q 047571          517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG---SITWTAIIEAYG  591 (681)
Q Consensus       517 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~  591 (681)
                      |..|...|.+.+..++|.++++.|.+.- .....+|-..+..+.+..+-++|..++.++..  |.   +....-.+..-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            8889999999999999999999999763 36788899999999999999999999887766  33   444555566667


Q ss_pred             cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCC
Q 047571          592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL--EEHYLIMIDILTRFGR  666 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~  666 (681)
                      +.|+.+++..+|+..+.. .|--...|+.+++.=.+.|+.+.+..+|+++... ++.|-  ...|.-+++-=-+.|+
T Consensus      1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHHHhcCc
Confidence            899999999999998875 2446778999999999999999999999999874 77664  4566666665555565

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.24  E-value=0.0021  Score=59.08  Aligned_cols=301  Identities=12%  Similarity=-0.042  Sum_probs=163.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHhhhhhhcccchhhhhhhhccCCCCCchHH-hHHHHH
Q 047571          281 SMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTIL---LPVIGEAWARKLGQEVHAYVLKNERYSEELFVR-SSLVDM  356 (681)
Q Consensus       281 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~  356 (681)
                      .+...+...|++.+|+.-|...++-    |+..|..+   ...|...|+...|..-+..+++.   .||...- -.-...
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchh
Confidence            3567778888999999988887653    34444433   34566667777776666666543   4443321 122345


Q ss_pred             HHhcCCHHHHHHHHhhcCCCCh------hh------------HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571          357 YCKCRDMNSAWRVFYETEERNE------IL------------WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT  418 (681)
Q Consensus       357 ~~~~~~~~~a~~~~~~~~~~~~------~~------------~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  418 (681)
                      +.+.|.++.|..-|+.+...++      ..            ....+..+...|+...|+.....+.+. .+.|...|..
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~  194 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQA  194 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHH
Confidence            6677888888777776654321      01            111222334445555555555555543 2334444444


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHH
Q 047571          419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA  498 (681)
Q Consensus       419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  498 (681)
                      -..+|...|++..|..=++...+.. ..++...-.+-..+...|+.+.++...++..+-|+..-.    +|..-+.+.+.
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv  269 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKV  269 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHH
Confidence            4455555555555554444444332 223333333444444555555555554444432221100    00000111122


Q ss_pred             HHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          499 LGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV---PFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       499 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      .+.++.|.                .....+.+-.+.+-.+.+.+......   ...+..+-.+|...|++.+|.+...++
T Consensus       270 ~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev  333 (504)
T KOG0624|consen  270 VKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV  333 (504)
T ss_pred             HHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence            22222222                12234566667777777776544322   233444556677778888998888887


Q ss_pred             CC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047571          576 PV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGG  610 (681)
Q Consensus       576 ~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g  610 (681)
                      ..  |+ +.++.--..+|.-...++.|+.-|+...+.+
T Consensus       334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            77  33 6667777778888888999999999888853

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.24  E-value=8.7e-05  Score=68.94  Aligned_cols=185  Identities=12%  Similarity=0.017  Sum_probs=127.8

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc----chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH--HH
Q 047571          445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNV----ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS--VA  516 (681)
Q Consensus       445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~  516 (681)
                      ......+-.+...+.+.|++++|...|+++..  |+.    ..+..+..++.+.|++++|...++++.+..-....  .+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            34556677788889999999999999998875  332    35677888999999999999999999875321111  13


Q ss_pred             HHHHHHHhccc--------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHH
Q 047571          517 MARMLSVSGQL--------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIE  588 (681)
Q Consensus       517 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~  588 (681)
                      +..+..++...        |+.+.|.+.++.+.+..... ...+..+.....    .....   .       .....+..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~----~~~~~---~-------~~~~~~a~  174 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDY----LRNRL---A-------GKELYVAR  174 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHH----HHHHH---H-------HHHHHHHH
Confidence            33444444433        78899999999988764322 222222211111    00000   0       01224566


Q ss_pred             HHHcCCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          589 AYGYNDLCQEALSLFDKMRNGGF-TP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      .+.+.|++++|+..+++..+..- .| ....+..+..++.+.|++++|..+++.+...
T Consensus       175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            78899999999999999987521 12 3578889999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.24  E-value=0.00011  Score=65.37  Aligned_cols=122  Identities=8%  Similarity=-0.066  Sum_probs=89.9

Q ss_pred             ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHH-HcCCC--hHHHH
Q 047571          527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAY-GYNDL--CQEAL  600 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~-~~~~~--~~~a~  600 (681)
                      .++.+++...++..++.+ +.+...|..+...|...|++++|...+++...  | +...+..+..++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            344555555555555543 34577788888888888888888888887766  3 466777777764 56676  59999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChh
Q 047571          601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEE  652 (681)
Q Consensus       601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  652 (681)
                      +++++..+.+ +-+...+..+...+.+.|++++|+..|+.+.+.  .+|+..
T Consensus       131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~  179 (198)
T PRK10370        131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVN  179 (198)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcc
Confidence            9999999864 447788888999999999999999999999873  444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.0027  Score=62.12  Aligned_cols=215  Identities=10%  Similarity=-0.002  Sum_probs=114.4

Q ss_pred             HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc---chHH-------HH
Q 047571          416 VATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNV---ISWT-------AM  485 (681)
Q Consensus       416 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~-------~l  485 (681)
                      ...+.++..+..+++.+.+-+....+..  -+..-++....+|...|.+.++...-+...+...   .-|+       .+
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3345555556666677777666666544  4444555566667777776666665554433111   1122       22


Q ss_pred             HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 047571          486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFL  565 (681)
Q Consensus       486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  565 (681)
                      ..+|.+.++++.++..|.+.......|+..         .+....+++....+...-.+... ..-...=...+.+.|++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence            334555666677777776655443333322         11122233333322222111111 11111124455666777


Q ss_pred             HHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          566 ECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       566 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      ..|...|.++..  | |...|.....+|.+.|.+..|++-.+...+.+ ++....|..-..++....+++.|.+.|++..
T Consensus       375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777776655  2 35667777777777777777777766666642 3334445555555566666777777776554


Q ss_pred             h
Q 047571          643 R  643 (681)
Q Consensus       643 ~  643 (681)
                      +
T Consensus       454 e  454 (539)
T KOG0548|consen  454 E  454 (539)
T ss_pred             h
Confidence            3

>PLN02789 farnesyltranstransferase

Probab=98.17  E-value=0.00093  Score=64.02  Aligned_cols=226  Identities=14%  Similarity=0.073  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      ++..+-..+...++.++|+.+..++++.  .|+..| |+.--..+...| ++++++..++.+...+ +-+..+|+.-...
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            3444445555666777777777777664  343332 222222333344 4566666666666554 2233344433333


Q ss_pred             HHhcCCh--HHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc---cc
Q 047571          458 YSKCGVL--DYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL---KA  529 (681)
Q Consensus       458 ~~~~g~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~  529 (681)
                      +.+.|+.  +++..+++++.+   .|...|+....++...|+++++++.++++++.+.. +...|+.....+.+.   |.
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence            3444432  444555544443   23445555555555556666666666666554422 222232222222111   11


Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcC----CChHHHHHH
Q 047571          530 LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYN----DLCQEALSL  602 (681)
Q Consensus       530 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~  602 (681)
                      .+                               ...++......++..   .|..+|+-+...+...    ++..+|.+.
T Consensus       195 ~~-------------------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~  243 (320)
T PLN02789        195 LE-------------------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV  243 (320)
T ss_pred             cc-------------------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence            10                               001233333322222   2345666666666552    334557777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccC------------------CHHHHHHHHHHh
Q 047571          603 FDKMRNGGFTPNHFTFKVLLSICNQAG------------------FADEACRIFNVM  641 (681)
Q Consensus       603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~  641 (681)
                      +.+..+.+ +.+......|++.|+...                  ..++|.++++.+
T Consensus       244 ~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        244 CLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL  299 (320)
T ss_pred             HHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence            76665532 346667777777776532                  235677777766

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.17  E-value=0.00011  Score=65.27  Aligned_cols=114  Identities=12%  Similarity=0.060  Sum_probs=94.5

Q ss_pred             cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--HHHHH
Q 047571          562 CGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC-NQAGF--ADEAC  635 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~--~~~A~  635 (681)
                      .++.+++...++....   .+...|..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            5566777777776555   457899999999999999999999999999964 44788888888874 67777  59999


Q ss_pred             HHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          636 RIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       636 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      +++++..+.   .| +...+..+..++.+.|++++|+..++++..
T Consensus       131 ~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        131 EMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999988764   34 478899999999999999999999998754

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.17  E-value=0.00059  Score=65.97  Aligned_cols=134  Identities=17%  Similarity=0.123  Sum_probs=85.1

Q ss_pred             HHhcCChhHHHHHHHHhHhCCCCCCHHHH-HHHHHHhccccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 047571          489 CIENGRLDDALGVFRSMQLSKHRPDSVAM-ARMLSVSGQLKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLE  566 (681)
Q Consensus       489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  566 (681)
                      +...|++++|+..++.+...  .|+...| ......+...++.++|.+.++.+....  |+ +...-.+.++|.+.|+..
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence            44567778888888777664  4554444 334456666777777777777766643  22 455556667777777777


Q ss_pred             HHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          567 CAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       567 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +|..+++....   .|+..|..|..+|...|+..++.....++                  +...|+++.|+..+....+
T Consensus       392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence            77777666555   34666777777777777766665544333                  3456777777777766665


Q ss_pred             c
Q 047571          644 G  644 (681)
Q Consensus       644 ~  644 (681)
                      .
T Consensus       454 ~  454 (484)
T COG4783         454 Q  454 (484)
T ss_pred             h
Confidence            3

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.17  E-value=4.3e-05  Score=64.00  Aligned_cols=89  Identities=11%  Similarity=-0.175  Sum_probs=42.2

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 047571          585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRF  664 (681)
Q Consensus       585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  664 (681)
                      .+...+...|++++|...|++..... +.+...|..+..++.+.|++++|+..|+...+.  .+.+...+..++.++.+.
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHc
Confidence            34444445555555555555554432 224444555555555555555555555544431  111244455555555555


Q ss_pred             CCHHHHHHHHHh
Q 047571          665 GRIEEAHRFREM  676 (681)
Q Consensus       665 g~~~~A~~~~~~  676 (681)
                      |+.++|++.+++
T Consensus       106 g~~~eAi~~~~~  117 (144)
T PRK15359        106 GEPGLAREAFQT  117 (144)
T ss_pred             CCHHHHHHHHHH
Confidence            555555554443

>PLN02789 farnesyltranstransferase

Probab=98.16  E-value=0.00061  Score=65.24  Aligned_cols=125  Identities=8%  Similarity=-0.084  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcC---CC----hHHHHHHHHHHHhCCCCCCHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYN---DL----CQEALSLFDKMRNGGFTPNHFTF  618 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~---~~----~~~a~~~~~~m~~~g~~p~~~~~  618 (681)
                      -.+|.....++...|+++++.+.++++.+   .|..+|+.....+.+.   |.    .++.++...+++... +-|...|
T Consensus       142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW  220 (320)
T PLN02789        142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPW  220 (320)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHH
Confidence            34444444445555555555555555444   2344565555444433   22    356788887887752 4477888


Q ss_pred             HHHHHHHhcc----CCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC------------------CHHHHHHHHH
Q 047571          619 KVLLSICNQA----GFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFG------------------RIEEAHRFRE  675 (681)
Q Consensus       619 ~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g------------------~~~~A~~~~~  675 (681)
                      +.+...+...    +...+|.+.+.+..+   ..| +......|+++|+...                  ..++|.++++
T Consensus       221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~---~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  297 (320)
T PLN02789        221 RYLRGLFKDDKEALVSDPEVSSVCLEVLS---KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCS  297 (320)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHHHhhc---ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHH
Confidence            8888888773    445678888887655   233 4677888999998642                  3467888877


Q ss_pred             hc
Q 047571          676 MS  677 (681)
Q Consensus       676 ~~  677 (681)
                      .+
T Consensus       298 ~l  299 (320)
T PLN02789        298 EL  299 (320)
T ss_pred             HH
Confidence            65

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=0.00022  Score=70.04  Aligned_cols=139  Identities=7%  Similarity=-0.096  Sum_probs=97.5

Q ss_pred             HHHHHHh-HhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571          499 LGVFRSM-QLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV  577 (681)
Q Consensus       499 ~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  577 (681)
                      .++|-++ ...+..+|......|--.|--.|++++|...|+.++... +-|..+|+.|...++...+.++|...|.++.+
T Consensus       414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence            3333333 444544666666777777777888888888888887753 33577888888888888889999999888877


Q ss_pred             --CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571          578 --KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN---GG------FTPNHFTFKVLLSICNQAGFADEACRIF  638 (681)
Q Consensus       578 --~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~  638 (681)
                        |+ +.++-.|.-.|...|.+++|.+.|=+.+.   .+      ..++...|.+|-.++.-.++.|.+.++.
T Consensus       493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence              66 55666777889999999999988776543   21      1223456777766666667666555443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.12  E-value=5.2e-06  Score=50.00  Aligned_cols=34  Identities=29%  Similarity=0.637  Sum_probs=31.8

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD  513 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  513 (681)
                      .+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            4799999999999999999999999999999997

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.11  E-value=0.00015  Score=76.75  Aligned_cols=128  Identities=13%  Similarity=0.111  Sum_probs=79.0

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571          546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL  622 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~  622 (681)
                      ..++..+..|..+....|.+++|..+++.+.+  |+ ......++..+.+.+++++|+..+++..+.. +-+......+.
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a  161 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA  161 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence            34466666666666666677777766666655  44 3445556666666667777777766666642 33455566666


Q ss_pred             HHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          623 SICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       623 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      .++.+.|++++|.++|+++...  .+-+...+..+..++.+.|+.++|...|++
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~  213 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQA  213 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666667777777777666541  112255666666666666777766666654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.11  E-value=5.7e-06  Score=49.82  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047571          277 VVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNS  311 (681)
Q Consensus       277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  311 (681)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.09  E-value=0.0001  Score=62.08  Aligned_cols=112  Identities=18%  Similarity=0.066  Sum_probs=80.9

Q ss_pred             cCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHH
Q 047571          562 CGFLECAKLVFDAVPV--KGS----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADE  633 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~  633 (681)
                      .++...+...++.+..  |+.    ...-.+...+...|++++|...|++..+....|+  ......|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4555555555555544  221    2233456778889999999999999999752232  2345567888999999999


Q ss_pred             HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          634 ACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       634 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      |+..++....   .......+...+++|.+.|+.++|+..+++
T Consensus       104 Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999976433   223456788899999999999999999875

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.07  E-value=7.1e-06  Score=48.93  Aligned_cols=33  Identities=27%  Similarity=0.578  Sum_probs=30.1

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP  512 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  512 (681)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999887

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.0023  Score=56.78  Aligned_cols=82  Identities=10%  Similarity=0.135  Sum_probs=39.1

Q ss_pred             hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChh
Q 047571          424 SQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK----CGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLD  496 (681)
Q Consensus       424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~  496 (681)
                      .+..+.+.|.+.++.|.+..   +..+.+.|..++.+    .+++.+|.-+|+++.+   |+..+.+....++...|+++
T Consensus       148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence            34444555555555554422   33344444444332    2345555555555544   33344444445555555555


Q ss_pred             HHHHHHHHhHhC
Q 047571          497 DALGVFRSMQLS  508 (681)
Q Consensus       497 ~A~~~~~~m~~~  508 (681)
                      +|..++++...+
T Consensus       225 eAe~lL~eaL~k  236 (299)
T KOG3081|consen  225 EAESLLEEALDK  236 (299)
T ss_pred             HHHHHHHHHHhc
Confidence            555555555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.04  E-value=0.0009  Score=71.02  Aligned_cols=128  Identities=15%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047571          478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENI  556 (681)
Q Consensus       478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  556 (681)
                      ++..+-.|.....+.|++++|+.+++...+.  .|+.. ....+...+.+.+.+++|....+...... +-+......+.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a  161 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA  161 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence            3556666677777777777777777777663  55543 33444455555555555555555555432 11233334444


Q ss_pred             HHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          557 KMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       557 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      .++.+.|++++|..+|+++..  |+ ..++-.+..++...|+.++|...|++..+
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444444444444444443  11 23344444444444444444444444444

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.03  E-value=1e-05  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=31.7

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047571          276 IVVWGSMIAGFAHNRLRWEALDCARWMIREGIYP  309 (681)
Q Consensus       276 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  309 (681)
                      +.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3589999999999999999999999999999987

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.01  E-value=0.0017  Score=69.74  Aligned_cols=151  Identities=13%  Similarity=0.090  Sum_probs=108.4

Q ss_pred             ChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHh
Q 047571          209 NVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAH  288 (681)
Q Consensus       209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~  288 (681)
                      +...+..+..+|.+.|+.+++..+++.+.+.. +-++.+.|.+...|... ++++|++++.+           .+..+..
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K-----------AV~~~i~  181 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK-----------AIYRFIK  181 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH-----------HHHHHHh
Confidence            33467778888889999999999999999887 66788889999999888 99999998876           3455777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHH
Q 047571          289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWR  368 (681)
Q Consensus       289 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  368 (681)
                      .+++.++.+++.++....  |+...+-               ..+.+.+....+...-..++-.+-..|-..++++++..
T Consensus       182 ~kq~~~~~e~W~k~~~~~--~~d~d~f---------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~  244 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYN--SDDFDFF---------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY  244 (906)
T ss_pred             hhcchHHHHHHHHHHhcC--cccchHH---------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence            889999999999988753  3333221               11222222222344445555667778888888999999


Q ss_pred             HHhhcCCC---ChhhHHHHHHHHH
Q 047571          369 VFYETEER---NEILWTALMSGYV  389 (681)
Q Consensus       369 ~~~~~~~~---~~~~~~~li~~~~  389 (681)
                      +++.+.+.   |..+..-++.+|.
T Consensus       245 iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        245 ILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHhcCCcchhhHHHHHHHHH
Confidence            98887753   5556666666665

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.01  E-value=0.00049  Score=60.95  Aligned_cols=154  Identities=16%  Similarity=0.050  Sum_probs=91.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc
Q 047571          452 TSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK  528 (681)
Q Consensus       452 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  528 (681)
                      ..+-..+.-.|+-+....+......   .|.......+....+.|++.+|+..+++..... ++|...++.+--+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            3344555556666666666655432   233344556777777788888888887776643 555556666666666666


Q ss_pred             chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       529 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +.+.|..-|.+..+...                                .+...+|.+.-.+.-.|+.+.|..++.+...
T Consensus       149 r~~~Ar~ay~qAl~L~~--------------------------------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         149 RFDEARRAYRQALELAP--------------------------------NEPSIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ChhHHHHHHHHHHHhcc--------------------------------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66666665555554321                                2233455666666666666666666666665


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571          609 GGFTPNHFTFKVLLSICNQAGFADEACRIFN  639 (681)
Q Consensus       609 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  639 (681)
                      .+ .-|...-..|..+....|++++|..+..
T Consensus       197 ~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         197 SP-AADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             CC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            42 2255555566666666666666666654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.01  E-value=0.0012  Score=70.76  Aligned_cols=235  Identities=10%  Similarity=0.046  Sum_probs=128.1

Q ss_pred             ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHH-HhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571          377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIP-VCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLM  455 (681)
Q Consensus       377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  455 (681)
                      +...+..|+..+...+++++|.++.+...+.  .|+...+..+.. .+.+.++...+..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            4556777888888888888888888765554  455443332222 34444444333333                 122


Q ss_pred             HHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571          456 IMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG  533 (681)
Q Consensus       456 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  533 (681)
                      .......++.....+...+.+  .+...+..+..+|-+.|+.++|..+|+++.+.. +-|....+.+...++.. +.++|
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence            222222233222222222222  122355566666777777777777777776654 33445555565555555 66666


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCC
Q 047571          534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG-GFT  612 (681)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~  612 (681)
                      .+++.+....               |...+++..+.++|.++...+             ..+++.-..+.+++..+ |..
T Consensus       169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-------------~~d~d~f~~i~~ki~~~~~~~  220 (906)
T PRK14720        169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-------------SDDFDFFLRIERKVLGHREFT  220 (906)
T ss_pred             HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-------------cccchHHHHHHHHHHhhhccc
Confidence            6665554432               344445555555555433311             22333334444444433 323


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 047571          613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT  662 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  662 (681)
                      --..++.-+-..|...++|++++.+++.+.+- . +-+.....-++++|.
T Consensus       221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEH-D-NKNNKAREELIRFYK  268 (906)
T ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-C-CcchhhHHHHHHHHH
Confidence            33445555667778888999999999988763 2 224566777777775

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0016  Score=57.32  Aligned_cols=178  Identities=13%  Similarity=0.129  Sum_probs=103.9

Q ss_pred             cCChHHHHHHHhhCCC--------CCcc-hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH-Hhccccch
Q 047571          461 CGVLDYSLKLFDEMEV--------RNVI-SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS-VSGQLKAL  530 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~--------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~  530 (681)
                      ..+.++..+++.++..        ++.. .|..++-+....|+.+-|...++++..+-  |.+.-...+-. -+...|.+
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence            4456777777766542        2222 34555555566677777777777776653  43332222211 23345677


Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 047571          531 KLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMR  607 (681)
Q Consensus       531 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  607 (681)
                      ++|.++++.+++.+ +.+..++..=+-+.-..|+.-+|.+-+.+..+   .|...|.-+...|...|++++|.-.+++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            77777777777665 33444454444555555665566665555444   566777777777777777777777777777


Q ss_pred             hCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHHhhh
Q 047571          608 NGGFTP-NHFTFKVLLSICNQAG---FADEACRIFNVMSR  643 (681)
Q Consensus       608 ~~g~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~  643 (681)
                      -.  .| ++..+..+.+.+.-.|   +..-|.+++.+..+
T Consensus       182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            63  34 5666666666654444   34455666664443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.96  E-value=9.9e-05  Score=61.58  Aligned_cols=94  Identities=10%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ......+...+...|++++|.+.++.+..  | +...|..+...+...|++++|...+++..+.+ +.+...+..+...+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            34555666777777888888777776654  3 35667777777777778888888777777653 44666777777777


Q ss_pred             hccCCHHHHHHHHHHhhh
Q 047571          626 NQAGFADEACRIFNVMSR  643 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~  643 (681)
                      ...|++++|.+.|+...+
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        96 LALGEPESALKALDLAIE  113 (135)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            777888888887776665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.96  E-value=0.00048  Score=66.57  Aligned_cols=173  Identities=9%  Similarity=-0.027  Sum_probs=109.1

Q ss_pred             CChHHHHHHHhhCCC------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHH
Q 047571          462 GVLDYSLKLFDEMEV------RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKE  535 (681)
Q Consensus       462 g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  535 (681)
                      .++.++....+.+..      ++...+...+.+......-..+-..+ .+... -.-...-|..-+ .+...|..+.|+.
T Consensus       251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~  327 (484)
T COG4783         251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSK-RGGLAAQYGRAL-QTYLAGQYDEALK  327 (484)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence            345556666666654      34445555555544333322222222 22222 011222333333 2345677888888


Q ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571          536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT  612 (681)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  612 (681)
                      .++.+++.. +-++.......+.+.+.++..+|.+.++++..  |+ ...+-.+..+|.+.|+.++|+.++++..... +
T Consensus       328 ~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p  405 (484)
T COG4783         328 LLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P  405 (484)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence            888877642 34566677777888888888888888887776  55 4556667778888888888888888877753 5


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571          613 PNHFTFKVLLSICNQAGFADEACRIFN  639 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~A~~~~~  639 (681)
                      -|+..|..|..+|...|+..+|....-
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            578888888888888888777776654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.95  E-value=0.037  Score=58.00  Aligned_cols=92  Identities=14%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhcCCHH---HHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          552 AAENIKMYGMCGFLE---CAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~---~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      .+.+++++.+.++..   +|.-+++....  | |..+--.+|+.|.-.|-+..|.++|+.+--.++.-|..-|. +...+
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~  517 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA  517 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence            345666777776654   44555554444  2 23333456777777787788888887776655555544442 23445


Q ss_pred             hccCCHHHHHHHHHHhhhc
Q 047571          626 NQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...|++..+...+....+-
T Consensus       518 ~t~g~~~~~s~~~~~~lkf  536 (932)
T KOG2053|consen  518 ETSGRSSFASNTFNEHLKF  536 (932)
T ss_pred             HhcccchhHHHHHHHHHHH
Confidence            5667777777777766553

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.87  E-value=0.034  Score=54.84  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcC--CCCCccHHHHHH
Q 047571          104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESS--SESVYPWNALLR  181 (681)
Q Consensus       104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~  181 (681)
                      |-|..+|+.||+-+... -.++++..++++...- +..+..|..-+..-.+..+++..+.+|....  .-++..|...|.
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~   94 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS   94 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence            55888899998887766 8888999999887542 5556777888888888888999988887644  234555666655


Q ss_pred             HHH
Q 047571          182 GAV  184 (681)
Q Consensus       182 ~~~  184 (681)
                      --.
T Consensus        95 YVR   97 (656)
T KOG1914|consen   95 YVR   97 (656)
T ss_pred             HHH
Confidence            433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.86  E-value=0.023  Score=54.42  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF  630 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~  630 (681)
                      ..+..+..+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++...      .-++.-|...+.+|.+.|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            4445566666677777788887777777777777788888888887776665432      1233667777777778888


Q ss_pred             HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          631 ADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       631 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      ..+|..+...+      +     +..-+..|.+.|++.+|.+..
T Consensus       253 ~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  253 KKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             HHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHH
Confidence            88877777642      1     244456677777777776653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.85  E-value=0.057  Score=56.71  Aligned_cols=218  Identities=12%  Similarity=0.084  Sum_probs=134.7

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChh
Q 047571           82 FARQNKLKEALVILDYMDQQGIPVNVTTFNALITAC--VRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFE  159 (681)
Q Consensus        82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  159 (681)
                      ....+++..|+.....+.++.  |+. .|..++.++  .+.|+.++|..+++.....+.. |..|...+..+|.+.|+.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence            345678888998888887763  333 344555554  5688889999888888777644 8888899999999999999


Q ss_pred             HHHHhhhhcCCCCCc--cHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccC----------chh
Q 047571          160 DAEKVFDESSSESVY--PWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGAS----------ALM  227 (681)
Q Consensus       160 ~a~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------~~~  227 (681)
                      +|..+++.....++.  -...+..+|++.+  .+.+-...--+|.+. .+-+.+.|=.++.......          -..
T Consensus        95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~--~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   95 EAVHLYERANQKYPSEELLYHLFMAYVREK--SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHHhhCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            999999887754443  2344555666666  554443333333331 2223334444444433211          123


Q ss_pred             hhHHHHHHHHHhC-CCCCcHHHhHHHHHHHhcCChHHHHHHHhc-----cCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047571          228 QGLKTHALLIKNG-FVDYLILRTSLIDMYFKCGKIKLARRVFDE-----TGDRDIVVWGSMIAGFAHNRLRWEALDCARW  301 (681)
Q Consensus       228 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  301 (681)
                      -|.+.++.+.+.+ -.-+..-.-.-...+-..|++++|++++..     ....+...-+--+..+...+++.+..++-.+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            3555666665544 111111111223445567889999988832     2223444555666777888888888888888


Q ss_pred             HHHcC
Q 047571          302 MIREG  306 (681)
Q Consensus       302 m~~~g  306 (681)
                      +...|
T Consensus       252 Ll~k~  256 (932)
T KOG2053|consen  252 LLEKG  256 (932)
T ss_pred             HHHhC
Confidence            88876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.80  E-value=0.00047  Score=67.36  Aligned_cols=85  Identities=16%  Similarity=0.033  Sum_probs=50.1

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGF  630 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~  630 (681)
                      +++.+...++-.+|.+++.+...   .+...+..-...+.+.++++.|+++.+++.+  ..| +..+|..|..+|.+.|+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCC
Confidence            33333334444444444443333   1233444445556677777777777777777  355 44577777777777777


Q ss_pred             HHHHHHHHHHh
Q 047571          631 ADEACRIFNVM  641 (681)
Q Consensus       631 ~~~A~~~~~~~  641 (681)
                      ++.|+..++.+
T Consensus       284 ~e~ALlaLNs~  294 (395)
T PF09295_consen  284 FENALLALNSC  294 (395)
T ss_pred             HHHHHHHHhcC
Confidence            77777776654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.79  E-value=0.00025  Score=53.72  Aligned_cols=80  Identities=13%  Similarity=0.127  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------ChhHHHHHHHHHHHhCCCCchhHH
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGI-PVNVTTFNALITACVRTR--------SLVEGRLIHTHIRINGLENNGFLR  145 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~  145 (681)
                      -...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.+++.        .....+.+|+.|...++.|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            35567788888999999999999999999 899999999999998753        345678899999999999999999


Q ss_pred             HHHHHHhhc
Q 047571          146 TKLVKMYTS  154 (681)
Q Consensus       146 ~~l~~~~~~  154 (681)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            999987764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.77  E-value=0.00028  Score=58.87  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=84.7

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCch
Q 047571           63 SSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNG  142 (681)
Q Consensus        63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  142 (681)
                      ..+...|.+......+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.+ +.+.
T Consensus         8 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~   85 (135)
T TIGR02552         8 DLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDP   85 (135)
T ss_pred             HHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCh
Confidence            3444555666677788888889999999999999987765 4577888888888889999999999999888776 5567


Q ss_pred             hHHHHHHHHhhcCCChhHHHHhhhhcC
Q 047571          143 FLRTKLVKMYTSCGSFEDAEKVFDESS  169 (681)
Q Consensus       143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~  169 (681)
                      ..+..+...+...|++++|.+.|+...
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777778888888999999998887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.75  E-value=0.00045  Score=52.44  Aligned_cols=88  Identities=15%  Similarity=0.125  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCC
Q 047571          110 FNALITACVRTRSLVEGRLIHTHIRINGL-ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGK  188 (681)
Q Consensus       110 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~  188 (681)
                      -...|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+.   +.                     
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i---e~---------------------   83 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI---EN---------------------   83 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH---HH---------------------
Confidence            34556677777999999999999999999 999999999999887643211111   11                     


Q ss_pred             cChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 047571          189 KRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG  222 (681)
Q Consensus       189 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  222 (681)
                       .....+.+|+.|...+++|+..||++++..+.+
T Consensus        84 -kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   84 -KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             -HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence             567788899999999999999999999988754

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.75  E-value=3.8e-05  Score=44.52  Aligned_cols=31  Identities=23%  Similarity=0.499  Sum_probs=25.8

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKH  510 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  510 (681)
                      ++|++++.+|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888888764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.75  E-value=0.0013  Score=55.29  Aligned_cols=54  Identities=17%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571          585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV  640 (681)
Q Consensus       585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  640 (681)
                      .|...+...|++++|+..++.....  ......+....+++.+.|++++|...|+.
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3555666677777777777553322  22344555666777777777777777764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.70  E-value=0.0001  Score=55.12  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=61.2

Q ss_pred             CCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 047571          593 NDLCQEALSLFDKMRNGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEA  670 (681)
Q Consensus       593 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  670 (681)
                      .|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+++++. .   +..+ +......++++|.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            58899999999999986421 2455666689999999999999999987 2   2233 235556779999999999999


Q ss_pred             HHHHHh
Q 047571          671 HRFREM  676 (681)
Q Consensus       671 ~~~~~~  676 (681)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.69  E-value=0.022  Score=54.19  Aligned_cols=99  Identities=10%  Similarity=0.027  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhc-CCCCCC--hh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFT-----PNHF-TFKVLLSICNQAGFADEACRIFNVMSRG-YKIEAL--EE  652 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~--~~  652 (681)
                      .+..+...+.+.|++++|+++|++....-..     .+.. .|...+-++...||...|.+.++..... .++..+  ..
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            4556677788888888888888887764322     1222 2333444566678888888888877643 123322  44


Q ss_pred             HHHHHHHHHhh--cCCHHHHHHHHHhccCC
Q 047571          653 HYLIMIDILTR--FGRIEEAHRFREMSSSL  680 (681)
Q Consensus       653 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~  680 (681)
                      ....|++++-.  ...+++|+.-++++..|
T Consensus       237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~l  266 (282)
T PF14938_consen  237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRL  266 (282)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence            55666666643  24577787777777654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.68  E-value=6e-05  Score=43.67  Aligned_cols=31  Identities=32%  Similarity=0.406  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047571          277 VVWGSMIAGFAHNRLRWEALDCARWMIREGI  307 (681)
Q Consensus       277 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  307 (681)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788999999999999999999999988764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.66  E-value=0.00058  Score=52.61  Aligned_cols=93  Identities=17%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT  662 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  662 (681)
                      |..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.++...+.  .+.+...+..+..++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence            4455666677788888888888877642 334466667777777788888888888776653  1223356777777888


Q ss_pred             hcCCHHHHHHHHHhcc
Q 047571          663 RFGRIEEAHRFREMSS  678 (681)
Q Consensus       663 ~~g~~~~A~~~~~~~~  678 (681)
                      ..|+.++|...+++..
T Consensus        80 ~~~~~~~a~~~~~~~~   95 (100)
T cd00189          80 KLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHhHHHHHHHHHHHH
Confidence            8888888888777653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.01  Score=52.44  Aligned_cols=184  Identities=11%  Similarity=0.069  Sum_probs=134.6

Q ss_pred             hccCChhHHHHHHHHHHH---hC-CCCChh-HHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHH-HHHHHhcCCh
Q 047571          424 SQLKALNHGKEIHAYAVK---NQ-FLPNVS-IITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAM-IDSCIENGRL  495 (681)
Q Consensus       424 ~~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~  495 (681)
                      ....+.++..+++.++..   .| ..++.. .|..++-+....|+.+.|...++++..  |+..-...| ..-+-..|++
T Consensus        23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence            445678899999988875   33 445543 455666677788999999999998765  333221111 1124557999


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ++|+++|+.+.+.. +.|..++..-+-..-..|+.-.|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999999876 666677776666666677777887777766654 5779999999999999999999999999987


Q ss_pred             CC--CChh-hHHHHHHHHHc---CCChHHHHHHHHHHHhC
Q 047571          576 PV--KGSI-TWTAIIEAYGY---NDLCQEALSLFDKMRNG  609 (681)
Q Consensus       576 ~~--~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~  609 (681)
                      .-  |... .+..+...+.-   ..+.+.+.+.|.+.++.
T Consensus       181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            66  5433 34455555433   34788899999999885

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.63  E-value=0.072  Score=51.49  Aligned_cols=66  Identities=11%  Similarity=0.013  Sum_probs=50.8

Q ss_pred             HHHHHHH--HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHH
Q 047571          583 WTAIIEA--YGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLI  656 (681)
Q Consensus       583 ~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  656 (681)
                      -|.|.++  +..+|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|.+++.      .++|+...+++
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~------~LP~n~~~~ds  530 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ------KLPPNERMRDS  530 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH------hCCCchhhHHH
Confidence            3444443  4568999998877666666  78999999999999999999999999997      55666666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.60  E-value=0.0013  Score=53.19  Aligned_cols=95  Identities=13%  Similarity=-0.074  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 047571          550 FVAAENIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT--PNHFTFKVL  621 (681)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l  621 (681)
                      .++..++..+.+.|++++|...++.+..  |+    ...+..+...+...|++++|+..++++......  .....+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            3445556666666777777766666654  22    124445666666666777777777666653211  113455566


Q ss_pred             HHHHhccCCHHHHHHHHHHhhhc
Q 047571          622 LSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       622 ~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..++.+.|++++|.+.++.+.+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHH
Confidence            66666667777777766666553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.59  E-value=0.11  Score=52.81  Aligned_cols=214  Identities=12%  Similarity=0.068  Sum_probs=125.1

Q ss_pred             ChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHH-hCCCCCcHHHhHH------HHHHHhcCChH
Q 047571          190 RYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIK-NGFVDYLILRTSL------IDMYFKCGKIK  262 (681)
Q Consensus       190 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l------i~~~~~~~~~~  262 (681)
                      ..++|.+..+.      .|....|..+.......-.++.|+..|-.... .|++.-...-+..      ...-.--|+++
T Consensus       678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fe  751 (1189)
T KOG2041|consen  678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFE  751 (1189)
T ss_pred             chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence            45555555443      57777888887777777777777777765543 2332111111100      11122347899


Q ss_pred             HHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHhhhhhhcccchhhhhhh
Q 047571          263 LARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPN----SVVLTILLPVIGEAWARKLGQEVHAYVL  338 (681)
Q Consensus       263 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~  338 (681)
                      +|.+++-++..+|.     .|..+.+.|++-...++++.   -|-..|    ...++.+-..++....++.|.+.+....
T Consensus       752 eaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  752 EAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             Hhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988877764     35556677777666665532   121222    2456677777777777887777776554


Q ss_pred             hccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571          339 KNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT  418 (681)
Q Consensus       339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  418 (681)
                      ..          ...++++.+..++++-+.+-..+.+ +....-.+...+...|..++|.+.+-+-   +. |     -.
T Consensus       824 ~~----------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----ka  883 (1189)
T KOG2041|consen  824 DT----------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KA  883 (1189)
T ss_pred             ch----------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HH
Confidence            43          4567777777777776666666555 3344556667777777777776655322   11 1     12


Q ss_pred             HHHHhhccCChhHHHHHHH
Q 047571          419 VIPVCSQLKALNHGKEIHA  437 (681)
Q Consensus       419 ll~~~~~~~~~~~a~~~~~  437 (681)
                      .+..|...+++.+|.++-+
T Consensus       884 Av~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  884 AVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555566666655543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.13  Score=52.98  Aligned_cols=97  Identities=8%  Similarity=-0.001  Sum_probs=50.8

Q ss_pred             HcCCCCChhhHHH-----HHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCC---hHHHHHHHhccCC-
Q 047571          203 ELGVQLNVYTFSC-----VIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGK---IKLARRVFDETGD-  273 (681)
Q Consensus       203 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~-  273 (681)
                      ..|++.+..-|..     +|.-+...+.+..|.++-..+...-..- ..+|......+.+..+   -+.+..+-+++.. 
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            3455555544433     4555556666777776665553222112 3455555555555422   2223333334443 


Q ss_pred             -CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047571          274 -RDIVVWGSMIAGFAHNRLRWEALDCAR  300 (681)
Q Consensus       274 -~~~~~~~~li~~~~~~~~~~~a~~~~~  300 (681)
                       ....+|..+..-....|+.+-|..+++
T Consensus       504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle  531 (829)
T KOG2280|consen  504 LTPGISYAAIARRAYQEGRFELARKLLE  531 (829)
T ss_pred             CCCceeHHHHHHHHHhcCcHHHHHHHHh
Confidence             345566666666667777777766654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.54  E-value=0.022  Score=47.78  Aligned_cols=131  Identities=11%  Similarity=0.012  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C---ChhhHHH
Q 047571          511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K---GSITWTA  585 (681)
Q Consensus       511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~  585 (681)
                      .|+...--.+..+....|+..+|...|.+....-+..|+.+.-.+.++....++..+|...++++-+  |   .+...-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3444444444444445555555555555444444444555555555555555555555555555444  1   1334455


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +.+.+...|...+|...|+...+  +-|+...-......+.+.|+.++|..-+..+.+
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            67778888888888888888887  567665555556667788877776655544433

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.52  E-value=0.0009  Score=65.70  Aligned_cols=118  Identities=13%  Similarity=0.066  Sum_probs=92.7

Q ss_pred             CCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHH
Q 047571          344 SEELFVRSSLVDMYCKCRDMNSAWRVFYETEER------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA  417 (681)
Q Consensus       344 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  417 (681)
                      +.+......+++.+....+++.+..++.+....      -..+..++++.|.+.|..+.++.+++.=...|+-||..|++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            334444455666666666777777776665542      23456799999999999999999999999999999999999


Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 047571          418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC  461 (681)
Q Consensus       418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  461 (681)
                      .+|..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999988887777777777666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.51  E-value=0.098  Score=50.19  Aligned_cols=106  Identities=17%  Similarity=0.175  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc
Q 047571          450 IITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA  529 (681)
Q Consensus       450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  529 (681)
                      +.+..+.-+...|+...|.++..+..-||..-|-..+.+++..++|++-.++...   +   -++.-|...+.+|.+.|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence            4445566666778888888888888778888888888888888888776665432   1   123556777777777777


Q ss_pred             hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047571          530 LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLV  571 (681)
Q Consensus       530 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  571 (681)
                      ..+|..+...+     +     +..-+.+|.++|++.+|.+.
T Consensus       253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence            77777666551     1     13445666666666666554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.50  E-value=0.0019  Score=53.31  Aligned_cols=96  Identities=8%  Similarity=-0.079  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          550 FVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      ...-.+...+...|++++|+.+|+-+..  | +..-|-.|.-++...|++++|+..|......+ +-|+..+-.+..++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L  114 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            3344555666777888888888886655  3 35566777777778888888888888888764 447788888888888


Q ss_pred             ccCCHHHHHHHHHHhhhcCC
Q 047571          627 QAGFADEACRIFNVMSRGYK  646 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~  646 (681)
                      ..|+.+.|.+.|+.....-+
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHhc
Confidence            88888888888887766433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.47  E-value=0.0016  Score=56.32  Aligned_cols=117  Identities=13%  Similarity=0.080  Sum_probs=78.7

Q ss_pred             CChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHH
Q 047571          105 VNVTTFNALITACVR-----TRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNAL  179 (681)
Q Consensus       105 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l  179 (681)
                      .+..+|..++..+.+     .|+++.....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+           
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------  111 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------  111 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence            466777777777664     57888889999999999999999999999998775 3322 11222211           


Q ss_pred             HHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCch-hhhHHHHHHHHH
Q 047571          180 LRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL-MQGLKTHALLIK  238 (681)
Q Consensus       180 l~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~  238 (681)
                         +. .--.+.+-+++++++|...|+-||..|+..+++.+.+.+.. ....+++=+|.+
T Consensus       112 ---F~-hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  112 ---FM-HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             ---hc-cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence               00 11115667788888888888888888888888888776643 233334444444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.45  E-value=0.079  Score=48.84  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          620 VLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       620 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .+..-|.+.|.+.-|+.-++.+.+.+.-.|. .+....++++|.+.|..++|.++...+
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4456688888888888888888877555543 667778888899999999888877654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.43  E-value=0.01  Score=59.36  Aligned_cols=196  Identities=14%  Similarity=0.092  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHh
Q 047571          292 RWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFY  371 (681)
Q Consensus       292 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  371 (681)
                      +-+.+.-+++|++.|-.|+....   ...|+-.|.+.+|.++|..--..          +..+.+|.....++.|.+++.
T Consensus       616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmyTDlRMFD~aQE~~~  682 (1081)
T KOG1538|consen  616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE----------NRALEMYTDLRMFDYAQEFLG  682 (1081)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch----------hhHHHHHHHHHHHHHHHHHhh
Confidence            33445556777888888876543   34456667777777776654333          445555555555666655554


Q ss_pred             hcCCC--------------ChhhHHHHHHHHHhCCChHHHHHHHH------HHHHcCcCC---CHHHHHHHHHHhhccCC
Q 047571          372 ETEER--------------NEILWTALMSGYVSNGRLEQALRSIA------WMQQEGFRP---DVVTVATVIPVCSQLKA  428 (681)
Q Consensus       372 ~~~~~--------------~~~~~~~li~~~~~~~~~~~A~~~~~------~m~~~g~~p---~~~~~~~ll~~~~~~~~  428 (681)
                      .....              ++.--.+....+...|+.++|..+.-      .+.+-+-+.   +..+...+...+.+...
T Consensus       683 ~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~  762 (1081)
T KOG1538|consen  683 SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS  762 (1081)
T ss_pred             cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence            33211              11111233444556677777665432      122222222   34455555555667778


Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcc-----------hHHHHHHHHHhcCCh
Q 047571          429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVI-----------SWTAMIDSCIENGRL  495 (681)
Q Consensus       429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-----------~~~~li~~~~~~~~~  495 (681)
                      +..|.++|..|-..         ..+++.+...+++++|..+-+...+  +|+.           -|.-.-.+|.+.|+-
T Consensus       763 ~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~  833 (1081)
T KOG1538|consen  763 PGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ  833 (1081)
T ss_pred             cchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence            88899998877543         4578889999999999999998886  4442           233344567788888


Q ss_pred             hHHHHHHHHhHhCC
Q 047571          496 DDALGVFRSMQLSK  509 (681)
Q Consensus       496 ~~A~~~~~~m~~~g  509 (681)
                      .+|.++++++....
T Consensus       834 ~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  834 REAVQVLEQLTNNA  847 (1081)
T ss_pred             HHHHHHHHHhhhhh
Confidence            88888888776543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.42  E-value=0.0025  Score=51.54  Aligned_cols=95  Identities=13%  Similarity=0.043  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN---HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIM  657 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l  657 (681)
                      ++-.++..+...|++++|.+.++++.+.. +.+   ...+..+..++.+.|++++|.++++.+.....-.+ ....+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            34555666677777777777777776642 111   34555677777777777777777777665322222 24556667


Q ss_pred             HHHHhhcCCHHHHHHHHHhc
Q 047571          658 IDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       658 ~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ..++.+.|+.++|.+.++++
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHH
Confidence            77777777777777777664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.41  E-value=0.14  Score=49.63  Aligned_cols=195  Identities=13%  Similarity=0.067  Sum_probs=118.5

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHH-------HHHhc-cc---cchHHHHHHHHHHHHcCCCCC
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARM-------LSVSG-QL---KALKLGKEIHGQVLKKDFASV  548 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-------l~~~~-~~---~~~~~a~~~~~~~~~~~~~~~  548 (681)
                      .++..++....+.++..+|-+.+.-+...  .|+...-..+       -+..+ ..   -+...-..+|+.....++..-
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq  376 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ  376 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence            45666666677777777777666665542  3333221111       11111 11   123333455555555443322


Q ss_pred             --hhHHHHHHHHHHhcCC-HHHHHHHhhhCCC---CChhhHHHHH----HHHHc---CCChHHHHHHHHHHHhCCCCC--
Q 047571          549 --PFVAAENIKMYGMCGF-LECAKLVFDAVPV---KGSITWTAII----EAYGY---NDLCQEALSLFDKMRNGGFTP--  613 (681)
Q Consensus       549 --~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~m~~~g~~p--  613 (681)
                        ......-+.-+.+.|. -++|..+++.+..   .|..+-|.+.    .+|..   ...+.+-+.+-+-..+.|++|  
T Consensus       377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~  456 (549)
T PF07079_consen  377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT  456 (549)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence              1112222344566666 7889999988777   3443333322    23322   334566666666677889888  


Q ss_pred             --CHHHHHHHHHH--HhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          614 --NHFTFKVLLSI--CNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       614 --~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                        +...-+.|.+|  +...|++.++.-+=.=+.   .+.|++.+|..++-++....++++|..++.++|-
T Consensus       457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence              44566667665  578899999876544333   5788999999999999999999999999999985

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.41  E-value=0.0039  Score=49.55  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh
Q 047571          586 IIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILT  662 (681)
Q Consensus       586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  662 (681)
                      +..++-..|+.++|+.+|++..+.|....  ...+..+.+.+...|++++|..+++.....+.-.+ +......+.-++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44556667777777777777777765543  34556667777777777777777777665422111 1222333344666


Q ss_pred             hcCCHHHHHHHH
Q 047571          663 RFGRIEEAHRFR  674 (681)
Q Consensus       663 ~~g~~~~A~~~~  674 (681)
                      ..|+.++|++++
T Consensus        87 ~~gr~~eAl~~~   98 (120)
T PF12688_consen   87 NLGRPKEALEWL   98 (120)
T ss_pred             HCCCHHHHHHHH
Confidence            777777777755

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.40  E-value=0.0034  Score=61.76  Aligned_cols=120  Identities=9%  Similarity=-0.002  Sum_probs=85.6

Q ss_pred             CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CChhh
Q 047571          509 KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK--DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KGSIT  582 (681)
Q Consensus       509 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~  582 (681)
                      +.+.+...+..+++.+....+++.+..++......  ....-+.+..++++.|.+.|..+++..+++.=..    ||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            34556667777777777777777777777776654  2333355556778888888888888887776554    77788


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA  628 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  628 (681)
                      +|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888888887776666777776666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.38  E-value=0.026  Score=56.66  Aligned_cols=55  Identities=9%  Similarity=0.168  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhCCC--hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571          381 WTALMSGYVSNGR--LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY  438 (681)
Q Consensus       381 ~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  438 (681)
                      ++..-.+|.+..+  +-+.+.-+++|+.+|-.|+.....   ..|+-.|++.+|.++|.+
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHHH
Confidence            4444455555444  445556677888888888876543   345667778888777753

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.35  E-value=0.0015  Score=50.25  Aligned_cols=91  Identities=15%  Similarity=0.058  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA  628 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  628 (681)
                      +..+...+...|++++|...++.+..  | +...+..+...+...|++++|.+.+++..+.+ +.+..++..+...+...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            34456666677777777777776654  2 23567777888888899999999999988864 44557788888899999


Q ss_pred             CCHHHHHHHHHHhhh
Q 047571          629 GFADEACRIFNVMSR  643 (681)
Q Consensus       629 g~~~~A~~~~~~~~~  643 (681)
                      |++++|...++...+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            999999999987754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.34  E-value=0.0051  Score=50.80  Aligned_cols=89  Identities=9%  Similarity=-0.046  Sum_probs=68.3

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571          584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL  661 (681)
Q Consensus       584 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~  661 (681)
                      -.+...+...|++++|.++|+-+..  +.| +..-|..|.-+|-..|++++|+..+.....-   .| ++..+-.+..++
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~ddp~~~~~ag~c~  113 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence            3445556678899999999988887  455 6667778888888889999999988877652   33 367788888888


Q ss_pred             hhcCCHHHHHHHHHhc
Q 047571          662 TRFGRIEEAHRFREMS  677 (681)
Q Consensus       662 ~~~g~~~~A~~~~~~~  677 (681)
                      ...|+.+.|++.|+..
T Consensus       114 L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        114 LACDNVCYAIKALKAV  129 (157)
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8899988888887753

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.30  E-value=0.0029  Score=54.77  Aligned_cols=97  Identities=11%  Similarity=0.196  Sum_probs=78.1

Q ss_pred             HHHHhhc--CCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccC------------
Q 047571          367 WRVFYET--EERNEILWTALMSGYVSN-----GRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK------------  427 (681)
Q Consensus       367 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------  427 (681)
                      ...|+..  ..++-.+|..+++.|.+.     |..+-....++.|.+-|+.-|..+|+.||+.+=+..            
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3445554  455777888888888754     667888888999999999999999999999886532            


Q ss_pred             ----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 047571          428 ----ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV  463 (681)
Q Consensus       428 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  463 (681)
                          +.+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                347789999999999999999999999999976654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.28  E-value=0.0054  Score=53.44  Aligned_cols=133  Identities=10%  Similarity=-0.018  Sum_probs=89.6

Q ss_pred             CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571           69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVN--VTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT  146 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  146 (681)
                      +.....+..+...+...|++++|+..|++....+..+.  ...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  110 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN  110 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence            34455678888889999999999999999976543222  4678888889999999999999999998765 44566677


Q ss_pred             HHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCc
Q 047571          147 KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASA  225 (681)
Q Consensus       147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  225 (681)
                      .+..++...|+...+..-++...                 .  .+.+|.+++++....  .|+.  |..++..+...|+
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~-----------------~--~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~  166 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAE-----------------A--LFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHH-----------------H--HHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence            77777877777555444332210                 0  345566666665443  2333  5555555554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.26  E-value=0.08  Score=50.42  Aligned_cols=106  Identities=9%  Similarity=0.096  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcC-----CCHH-HHHHHHHHhhccCChhHHHHHHHHHHHh--CCCCC--hh
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFR-----PDVV-TVATVIPVCSQLKALNHGKEIHAYAVKN--QFLPN--VS  449 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~  449 (681)
                      .+..+...+.+.|++++|.++|++.......     .+.. .|...+-++...|+...|...++.....  ++..+  ..
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            4566777788888888888888887664322     1221 1222333455567787888877776643  22222  23


Q ss_pred             HHHHHHHHHHh--cCChHHHHHHHhhCCCCCcchHHHH
Q 047571          450 IITSLMIMYSK--CGVLDYSLKLFDEMEVRNVISWTAM  485 (681)
Q Consensus       450 ~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~l  485 (681)
                      ....|+.++-.  ...++.+..-|+.+.+.|..--..|
T Consensus       237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l  274 (282)
T PF14938_consen  237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML  274 (282)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence            44555666544  3446666666666666555443333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.23  E-value=0.0034  Score=59.45  Aligned_cols=128  Identities=9%  Similarity=0.066  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHHHHHhhhCCC---CChhhHHHHHHHH
Q 047571          515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM-CGFLECAKLVFDAVPV---KGSITWTAIIEAY  590 (681)
Q Consensus       515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~  590 (681)
                      .+|..++..+.+.+..+.|+.+|.+..+.+ ..+..+|...+.+-.. .++.+.|..+|+....   .+...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            467788888888888999999999887542 3345566666555344 4555568888877666   4466777777777


Q ss_pred             HcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...|+.+.|..+|++.... +.++.   ..|...+.-=.+.|+++.+..+.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7788888888888887765 33332   46777777777778888888887777764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.22  E-value=0.086  Score=48.60  Aligned_cols=171  Identities=8%  Similarity=0.034  Sum_probs=92.9

Q ss_pred             HHHhcCChHHHHHHHhhCCC--CCcc-h---HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc--c-
Q 047571          457 MYSKCGVLDYSLKLFDEMEV--RNVI-S---WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ--L-  527 (681)
Q Consensus       457 ~~~~~g~~~~a~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~-  527 (681)
                      .+.+.|++++|.+.|+++..  |+.. .   .-.+..++.+.+++++|...+++..+....-...-+...+.+.+.  . 
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence            34456777777777776654  3221 1   123455667777777777777777765322122223223322221  0 


Q ss_pred             --------------cc---hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHH
Q 047571          528 --------------KA---LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAY  590 (681)
Q Consensus       528 --------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~  590 (681)
                                    .+   ...|...++.+++.               |=...-..+|...+..+...=..---.+..-|
T Consensus       121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y  185 (243)
T PRK10866        121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDRLAKYELSVAEYY  185 (243)
T ss_pred             hhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          01   22334444444433               21222223333322222110000111345668


Q ss_pred             HcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          591 GYNDLCQEALSLFDKMRNG--GFTPNHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      .+.|.+..|+.-++.+++.  +.+........++.+|.+.|..++|.++...+.
T Consensus       186 ~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        186 TKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            8899999999999999986  112245667788899999999999999887654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.17  E-value=0.0044  Score=60.96  Aligned_cols=89  Identities=9%  Similarity=-0.145  Sum_probs=75.0

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA  631 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~  631 (681)
                      -...+...|++++|...|+++..  | +...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            35566778999999999998877  3 46678888889999999999999999999853 44778888899999999999


Q ss_pred             HHHHHHHHHhhhc
Q 047571          632 DEACRIFNVMSRG  644 (681)
Q Consensus       632 ~~A~~~~~~~~~~  644 (681)
                      ++|++.|++..+.
T Consensus        87 ~eA~~~~~~al~l   99 (356)
T PLN03088         87 QTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.16  E-value=0.0055  Score=56.86  Aligned_cols=84  Identities=14%  Similarity=0.139  Sum_probs=36.8

Q ss_pred             HcCCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcC
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTPN----HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFG  665 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  665 (681)
                      .+.|++++|+..|+.+.+.  .|+    ...+..+..+|...|++++|...|+.+.+.+...|. ...+..++.++.+.|
T Consensus       154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g  231 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG  231 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence            3344555555555554442  221    133444444555555555555555544443222221 233333444444455


Q ss_pred             CHHHHHHHHHh
Q 047571          666 RIEEAHRFREM  676 (681)
Q Consensus       666 ~~~~A~~~~~~  676 (681)
                      +.++|.+++++
T Consensus       232 ~~~~A~~~~~~  242 (263)
T PRK10803        232 DTAKAKAVYQQ  242 (263)
T ss_pred             CHHHHHHHHHH
Confidence            55555554443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.15  E-value=0.26  Score=50.44  Aligned_cols=60  Identities=12%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLS-KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                      |-.|..-....|.++.|++.--.+.+- .+-|....|..+.-+.+....+....+.|-++.
T Consensus      1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            344444456678888888765444332 256667777776655555555555544444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.0026  Score=57.76  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=78.3

Q ss_pred             HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHH
Q 047571          558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADE  633 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~  633 (681)
                      -..+.+++++|...|.++..   .|.+-|..-..+|.+.|.++.|++-.+..+.  +.| -..+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence            46677899999999998877   4577788888899999999999998888887  566 45789999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          634 ACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       634 A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      |++.|++.   +.+.|+-++|..=++.
T Consensus       168 A~~aykKa---LeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  168 AIEAYKKA---LELDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHhh---hccCCCcHHHHHHHHH
Confidence            99998844   4678887766654433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.09  E-value=0.012  Score=46.78  Aligned_cols=93  Identities=14%  Similarity=0.030  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVN--VTTFNALITACVRTRSLVEGRLIHTHIRINGLE--NNGFLRTKLVK  150 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~  150 (681)
                      .......+-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..+++........  .+......+..
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            34456677788999999999999988876543  345667777888889999999999988765321  12233334445


Q ss_pred             HhhcCCChhHHHHhhhh
Q 047571          151 MYTSCGSFEDAEKVFDE  167 (681)
Q Consensus       151 ~~~~~g~~~~a~~~~~~  167 (681)
                      ++...|+.++|++.+-.
T Consensus        84 ~L~~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLE  100 (120)
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            67778888888887754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.47  Score=49.20  Aligned_cols=111  Identities=14%  Similarity=0.161  Sum_probs=76.6

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      ...-+.+-.+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+..      +.-|.-.+.+|.
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~  755 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL  755 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence            33444455566666778888888888888888877777777888888888777666655432      344566777888


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 047571          627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF  673 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  673 (681)
                      +.|+.++|.+++-+...          +...+.+|.+.|++.+|.++
T Consensus       756 ~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  756 KQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             hcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHHH
Confidence            88888888888763321          11456777888888777764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.08  E-value=0.0023  Score=44.93  Aligned_cols=58  Identities=21%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +...+...|++++|++.|++.++.. +-+...+..+..++...|++++|.++|+++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456677888888888888888764 336677777888888888888888888877653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.08  E-value=0.00084  Score=50.17  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             cCChhHHHHHHHHHhhCCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHH
Q 047571           85 QNKLKEALVILDYMDQQGIP-VNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEK  163 (681)
Q Consensus        85 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  163 (681)
                      +|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            57889999999999776431 2444555678888899999999999988 3333 2333444456788888899999988


Q ss_pred             hhhh
Q 047571          164 VFDE  167 (681)
Q Consensus       164 ~~~~  167 (681)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8864

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.07  E-value=0.012  Score=55.79  Aligned_cols=142  Identities=15%  Similarity=0.130  Sum_probs=105.2

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH-hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV-SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      .+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            368888999999999999999999998643 2333444433333 33356778899999998876 56678889999999


Q ss_pred             HHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          559 YGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       559 ~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      +.+.++.+.|..+|++...  +.    ...|...+.--.+.|+.+.+.++.+++.+.  -|+......+++-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            9999999999999998877  33    348999999989999999999999999984  55544444454444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.02  E-value=0.0028  Score=45.05  Aligned_cols=61  Identities=18%  Similarity=0.143  Sum_probs=46.3

Q ss_pred             HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL  655 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  655 (681)
                      ...|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++.+...   .|+...|.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~   62 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQ   62 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHH
Confidence            45788999999999988853 447788888999999999999999999977764   45533333

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.00  E-value=0.011  Score=58.28  Aligned_cols=98  Identities=13%  Similarity=-0.032  Sum_probs=79.3

Q ss_pred             HHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChH
Q 047571          521 LSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQ  597 (681)
Q Consensus       521 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~  597 (681)
                      ...+...|+++.|...++++++.+ +.+...+..+..+|...|++++|...++++..  | +...|..+..+|...|+++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence            345567799999999999999865 33577888899999999999999999998877  4 4667888899999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHH
Q 047571          598 EALSLFDKMRNGGFTPNHFTFKVL  621 (681)
Q Consensus       598 ~a~~~~~~m~~~g~~p~~~~~~~l  621 (681)
                      +|+..|++..+.  .|+......+
T Consensus        88 eA~~~~~~al~l--~P~~~~~~~~  109 (356)
T PLN03088         88 TAKAALEKGASL--APGDSRFTKL  109 (356)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHH
Confidence            999999999984  5644433333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.94  E-value=0.017  Score=50.13  Aligned_cols=91  Identities=14%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMI  658 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~  658 (681)
                      .|..+...+...|++++|+..|++.......|  ...++..+...+...|++++|++.++...+.   .|+ ...+..+.
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la  113 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHH
Confidence            45666666667777777777777776542222  2346677777777777777777777766543   222 44455555


Q ss_pred             HHHh-------hcCCHHHHHHHHH
Q 047571          659 DILT-------RFGRIEEAHRFRE  675 (681)
Q Consensus       659 ~~~~-------~~g~~~~A~~~~~  675 (681)
                      .++.       +.|++++|...++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHH
Confidence            5555       6677665554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.92  E-value=0.048  Score=45.84  Aligned_cols=125  Identities=12%  Similarity=0.033  Sum_probs=99.4

Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHH
Q 047571          544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHF  616 (681)
Q Consensus       544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~  616 (681)
                      ...|+...--.|.......|+..+|...|++...    .|....-.+.++....++...|...++++.+.+  |   ++.
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd  161 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD  161 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence            3467777778899999999999999999998777    667778888899999999999999999998853  4   344


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 047571          617 TFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF  673 (681)
Q Consensus       617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  673 (681)
                      +...+...+...|.+.+|...|+....   ..|+...-......+.+.|+.++|..-
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence            556678899999999999999997765   345544444445678889987777653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.85  E-value=0.029  Score=48.86  Aligned_cols=90  Identities=11%  Similarity=0.065  Sum_probs=57.7

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD--VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLM  455 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  455 (681)
                      ...+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+....+.. +.+...+..+.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            44566667777778888888888887766433222  3456666667777788888888887777653 22444555566


Q ss_pred             HHHHhcCChHHHH
Q 047571          456 IMYSKCGVLDYSL  468 (681)
Q Consensus       456 ~~~~~~g~~~~a~  468 (681)
                      ..+...|+...+.
T Consensus       114 ~~~~~~g~~~~a~  126 (172)
T PRK02603        114 VIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHcCChHhHh
Confidence            6666666544433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.85  E-value=0.0047  Score=44.02  Aligned_cols=63  Identities=19%  Similarity=0.154  Sum_probs=42.0

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhhh
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG-FADEACRIFNVMSR  643 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  643 (681)
                      ...|..+...+...|++++|+..|++..+.. +-+...|..+..++...| ++++|++.++...+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3456666777777777777777777777642 335566777777777777 57777777766544

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.84  E-value=0.041  Score=47.72  Aligned_cols=91  Identities=11%  Similarity=-0.075  Sum_probs=65.8

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPV--NVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV  149 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  149 (681)
                      ...+..+...+...|++++|+..|+........+  ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            4456777888888999999999999987653222  23578888888899999999999999888764 33445566666


Q ss_pred             HHhh-------cCCChhHHHH
Q 047571          150 KMYT-------SCGSFEDAEK  163 (681)
Q Consensus       150 ~~~~-------~~g~~~~a~~  163 (681)
                      ..+.       ..|+++.|+.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~  134 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEA  134 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHH
Confidence            6666       5556555554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.80  E-value=0.083  Score=54.60  Aligned_cols=71  Identities=10%  Similarity=0.055  Sum_probs=56.4

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL  655 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  655 (681)
                      ...|..+.-.....|++++|...+++..+.  .|+...|..+...+...|+.++|.+.+++..+   +.|...+|.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~---L~P~~pt~~  490 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN---LRPGENTLY  490 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCchHH
Confidence            456777766666789999999999999985  47888899999999999999999999987654   455545554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.78  E-value=0.52  Score=44.91  Aligned_cols=239  Identities=13%  Similarity=0.073  Sum_probs=138.1

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHH
Q 047571          425 QLKALNHGKEIHAYAVKNQFLPNVSI--ITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDAL  499 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~  499 (681)
                      -.|+.+.|.+-|+.|..   .|....  ...|.-.--+.|..+.|..+-++...  | -...+...+...|..|+|+.|+
T Consensus       132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al  208 (531)
T COG3898         132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL  208 (531)
T ss_pred             hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence            35677777777776664   222221  12222233456777777777666554  2 2346677777788888888888


Q ss_pred             HHHHHhHhCC-CCCCHH--HHHHHHHHhcc---ccchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHh
Q 047571          500 GVFRSMQLSK-HRPDSV--AMARMLSVSGQ---LKALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVF  572 (681)
Q Consensus       500 ~~~~~m~~~g-~~p~~~--~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~  572 (681)
                      ++++.-++.. +.++..  .-..|+.+-..   ..+...|...-.+..+  +.|+ ......-.+.+.+.|+..++-.++
T Consensus       209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il  286 (531)
T COG3898         209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL  286 (531)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence            8877665543 333332  12223332211   1234444444444443  2333 122233456777888888888888


Q ss_pred             hhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHH---HHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC
Q 047571          573 DAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDK---MRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYK  646 (681)
Q Consensus       573 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~---m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  646 (681)
                      +.+-+  |.+..+.  +..+.+.|+  .++.-+++   +.+  ++| |......+..+-...|++..|..--+...   .
T Consensus       287 E~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r  357 (531)
T COG3898         287 ETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---R  357 (531)
T ss_pred             HHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---h
Confidence            77655  4444442  223344444  33333333   333  355 56677777788888888888877766554   3


Q ss_pred             CCCChhHHHHHHHHHhhc-CCHHHHHHHHHhc
Q 047571          647 IEALEEHYLIMIDILTRF-GRIEEAHRFREMS  677 (681)
Q Consensus       647 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~  677 (681)
                      ..|....|..|.++-... ||-.+++.++-+-
T Consensus       358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            577778888888887544 8888888877654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.77  E-value=0.012  Score=53.52  Aligned_cols=99  Identities=15%  Similarity=0.098  Sum_probs=83.1

Q ss_pred             HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHcCCChHH
Q 047571          522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG---SITWTAIIEAYGYNDLCQE  598 (681)
Q Consensus       522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  598 (681)
                      .-..+.+++.+|+..|.+.++.. +-++..|..-..+|.+.|.++.|.+-.+....-|   ..+|..|..+|...|++++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            45677899999999999999864 3357777888999999999999999999888844   5689999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571          599 ALSLFDKMRNGGFTPNHFTFKVLLS  623 (681)
Q Consensus       599 a~~~~~~m~~~g~~p~~~~~~~l~~  623 (681)
                      |++.|++.++  +.|+-.+|-.-+.
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHHH
Confidence            9999999998  6887766654443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.74  E-value=0.0063  Score=42.69  Aligned_cols=55  Identities=27%  Similarity=0.292  Sum_probs=47.4

Q ss_pred             HHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          621 LLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       621 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +...+.+.|++++|++.|+.+.+.   .| +...+..+..++.+.|++++|.+++++..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456789999999999999999875   24 58889999999999999999999998864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.73  E-value=0.0032  Score=44.73  Aligned_cols=52  Identities=19%  Similarity=0.167  Sum_probs=43.5

Q ss_pred             hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      .+.|++++|+++|+.+.+.  .+-+...+..++.+|.+.|++++|.+++++++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5789999999999999875  222578888999999999999999999998764

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.68  E-value=0.044  Score=56.58  Aligned_cols=82  Identities=15%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          596 CQEALSLFDKMRNGG-FTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       596 ~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      ...+.+..++..... .+.++..|..+.-.....|++++|...+++...   +.|+...|..++.++...|+.++|.+.+
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            344555555544432 234667788777777778999999999998775   3578889999999999999999999999


Q ss_pred             HhccCC
Q 047571          675 EMSSSL  680 (681)
Q Consensus       675 ~~~~~~  680 (681)
                      ++--.+
T Consensus       477 ~~A~~L  482 (517)
T PRK10153        477 STAFNL  482 (517)
T ss_pred             HHHHhc
Confidence            875443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.1  Score=49.80  Aligned_cols=151  Identities=11%  Similarity=-0.132  Sum_probs=75.9

Q ss_pred             HHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH--hccccchHHHHHHHHHHHHcCCCCC-hhHHHH----------
Q 047571          488 SCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV--SGQLKALKLGKEIHGQVLKKDFASV-PFVAAE----------  554 (681)
Q Consensus       488 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----------  554 (681)
                      ++.-.|+.++|.++-....+..  ++ ..+...++.  +-..++.+.+...|.+.++.+.... ......          
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence            4556677777777766665532  11 123333332  3345667777777777665432211 001111          


Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC--CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV--KG-----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTFKVLLSICN  626 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~  626 (681)
                      -..-..+.|++..|.+.+.+...  |+     ...|-....+..+.|+.++|+.--++..+  +.|. ...|..-..++.
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL  332 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence            11223445666666666666555  22     33444445555566666666666665554  2221 122222333444


Q ss_pred             ccCCHHHHHHHHHHhhh
Q 047571          627 QAGFADEACRIFNVMSR  643 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~  643 (681)
                      ..++|++|.+-++...+
T Consensus       333 ~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            55666666666665544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.12  Score=46.20  Aligned_cols=129  Identities=11%  Similarity=0.047  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC-----CCCChhHHHHH
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD-----FASVPFVAAEN  555 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l  555 (681)
                      ..+.++..+.-.|.+.-.+..+++.++..-+-+......+.+...+.||.+.|...++.+.+..     ++...-+....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3455666667778888888889998887767777788888888889999999999999777643     23333333444


Q ss_pred             HHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          556 IKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      ...|.-..++..|...+.++..   .++...|.-.-...-.|+..+|++.++.|++.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4556667888888888888887   33444454444444578899999999999885

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.60  E-value=0.036  Score=52.59  Aligned_cols=94  Identities=9%  Similarity=-0.061  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh---cCCC-CCChh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMR----NGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSR---GYKI-EALEE  652 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~----~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~~~~~  652 (681)
                      .+..+..++.-.|+++.|.+.|+.-.    +.|-. .......+|...|.-..+++.|++++.+-..   .++- .-...
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R  316 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR  316 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            34444555555555555555555432    22211 1233444555666655666666666554321   1111 11235


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHH
Q 047571          653 HYLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       653 ~~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      .+.+|..++..-|..++|+.+.+
T Consensus       317 acwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  317 ACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHH
Confidence            56666666666666666665554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.57  E-value=0.4  Score=52.50  Aligned_cols=150  Identities=15%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             CChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHH
Q 047571          462 GVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ----LKALKLGKEIH  537 (681)
Q Consensus       462 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~  537 (681)
                      ++++.|+..+.++.   ...|.-.++--.++|-+++|+.++        .|+...+..+..+|+.    .+.++.|--.|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            45555555555544   222333333344555566665554        5666666555544432    34444444433


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC-Chh--hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571          538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK-GSI--TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN  614 (681)
Q Consensus       538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~  614 (681)
                      +..-+         ....+.+|..+|+|.+|..+-.++..+ |..  .-..|+.-+...+++-+|-+++.+-...   | 
T Consensus       963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~- 1029 (1265)
T KOG1920|consen  963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P- 1029 (1265)
T ss_pred             HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-
Confidence            32211         112334444445555555554444432 211  1133444444555555555555444331   1 


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHH
Q 047571          615 HFTFKVLLSICNQAGFADEACRIFN  639 (681)
Q Consensus       615 ~~~~~~l~~~~~~~g~~~~A~~~~~  639 (681)
                          .-.+..+++...|++|+.+-.
T Consensus      1030 ----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred             ----HHHHHHHhhHhHHHHHHHHHH
Confidence                122333445555555555444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.53  E-value=0.24  Score=48.07  Aligned_cols=32  Identities=16%  Similarity=0.072  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      .|...+.+++.++.-.|+++.|.+..+.|.+-
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            46778889999999999999999999998763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.52  E-value=0.0078  Score=44.14  Aligned_cols=62  Identities=16%  Similarity=0.138  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhhc---CCCC-CC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSRG---YKIE-AL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .++..+...|...|++++|++.+++..+.   .|.. |+ ..++..+..++.+.|++++|++++++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666777777777777777777766432   1211 22 556777777788888888888777764

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.51  E-value=0.0056  Score=43.61  Aligned_cols=63  Identities=24%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcC-CHHHHHHHHHhccC
Q 047571          614 NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFG-RIEEAHRFREMSSS  679 (681)
Q Consensus       614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  679 (681)
                      ++.+|..+...+...|++++|+..|++..+.   .| +...|..+..++.+.| ++++|++.+++...
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            5678889999999999999999999998874   44 4788999999999999 79999999987643

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.47  E-value=0.012  Score=42.46  Aligned_cols=56  Identities=14%  Similarity=0.020  Sum_probs=46.8

Q ss_pred             HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          588 EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       588 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..|.+.+++++|++.++++...+ +.+...+......+.+.|++++|.+.++...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56788899999999999999863 447777888888999999999999999988764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.46  E-value=0.62  Score=41.76  Aligned_cols=87  Identities=16%  Similarity=0.202  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDI  660 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~  660 (681)
                      .+..++.-|=......+|...+..+.+.   .-.. -..+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+
T Consensus       112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~  187 (203)
T PF13525_consen  112 EFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA  187 (203)
T ss_dssp             HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence            3445555555555566665555554431   1111 123566788999999999999999887544443 5667888899


Q ss_pred             HhhcCCHHHHHH
Q 047571          661 LTRFGRIEEAHR  672 (681)
Q Consensus       661 ~~~~g~~~~A~~  672 (681)
                      |.+.|..+.|..
T Consensus       188 y~~l~~~~~a~~  199 (203)
T PF13525_consen  188 YYKLGLKQAADT  199 (203)
T ss_dssp             HHHTT-HHHHHH
T ss_pred             HHHhCChHHHHH
Confidence            999998885543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.18  Score=45.10  Aligned_cols=138  Identities=9%  Similarity=-0.004  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHH-----H
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITS-----L  454 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l  454 (681)
                      ..+.+++.+.-.|.+.-.+..+++.++...+.+......+.+...+.|+.+.|...|+...+..-..+..+.+.     .
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            45667777777888888899999999877677888888888889999999999999997776433333333333     3


Q ss_pred             HHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571          455 MIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR  519 (681)
Q Consensus       455 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  519 (681)
                      ...|.-.+++..|...++++...   |+..-|.-.-+..-.|+..+|++.++.|...  .|...+-+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es  324 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES  324 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence            34556678888899999888763   4444455444555578999999999999885  455444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.16  Score=46.88  Aligned_cols=98  Identities=14%  Similarity=0.026  Sum_probs=78.4

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047571          546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGY---NDLCQEALSLFDKMRNGGFTPNHFTFK  619 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~  619 (681)
                      +-|..-|..|...|...|+.+.|..-|....+   ++...+..+..++..   .....++..+|+++.... +-|.....
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            44678888888888888988888888887766   556667667666553   235678999999999853 44778888


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          620 VLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       620 ~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      .|...+...|++.+|...|+.|.+.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc
Confidence            8889999999999999999999874

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.34  E-value=1  Score=43.01  Aligned_cols=273  Identities=15%  Similarity=0.096  Sum_probs=175.8

Q ss_pred             cCCHHHHHHHHhhcC---CCChhhHHHHHH--HHHhCCChHHHHHHHHHHHHcCcCCCHH--HHHHHHHHhhccCChhHH
Q 047571          360 CRDMNSAWRVFYETE---ERNEILWTALMS--GYVSNGRLEQALRSIAWMQQEGFRPDVV--TVATVIPVCSQLKALNHG  432 (681)
Q Consensus       360 ~~~~~~a~~~~~~~~---~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a  432 (681)
                      .||-..|.++-.+..   ..|....-.++.  +-.-.|+++.|.+-|+.|.+.   |...  -...|.-...+.|+.+.|
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA  173 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA  173 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence            466666666654433   224333333333  344579999999999999863   2221  123344445677888888


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcc--hHHHHHHHHH---hcCChhHHHHHH
Q 047571          433 KEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RNVI--SWTAMIDSCI---ENGRLDDALGVF  502 (681)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~A~~~~  502 (681)
                      .++-+.....- +--.-...+.+...+..|+++.|+++++.-..     +++.  .-..|+.+-.   -..+...|...-
T Consensus       174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A  252 (531)
T COG3898         174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA  252 (531)
T ss_pred             HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            88877766543 22345677888999999999999999987553     4432  1222332211   123344555544


Q ss_pred             HHhHhCCCCCCHHHH-HHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC--HHHHHH--HhhhCCC
Q 047571          503 RSMQLSKHRPDSVAM-ARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGF--LECAKL--VFDAVPV  577 (681)
Q Consensus       503 ~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~--~~~~~~~  577 (681)
                      .+..+  +.||..-- ..-..++.+.|++.++-.+++.+-+..  |.+.+...  ..+.+.|+  .+...+  -+..|+.
T Consensus       253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~  326 (531)
T COG3898         253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGDTALDRLKRAKKLESLKP  326 (531)
T ss_pred             HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCc
Confidence            44433  56665532 233467788999999999999988864  44444332  23445554  222222  2455666


Q ss_pred             CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhc
Q 047571          578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ-AGFADEACRIFNVMSRG  644 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~  644 (681)
                      .+..+--.+..+-...|++..|..--+....  ..|....|..|.+.-.. .||-.++.+.+-+..+.
T Consensus       327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            6777777788888889999999888887776  58999999988887654 49999999999888764

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.30  E-value=0.032  Score=47.02  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYL  655 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~  655 (681)
                      +...++..+...|++++|+.+.+++.... |-|...|..++.+|...|+..+|.++|+.+.+    .+|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            45667777888999999999999999853 44888999999999999999999999988743    468888865543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.30  E-value=0.29  Score=43.86  Aligned_cols=68  Identities=13%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCC
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGL  138 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  138 (681)
                      ++..+-.....+...|++.+|++.|+.+....  -+--......++.++.+.|++..|...++...+.-+
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP   73 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP   73 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            34556667788889999999999999997652  223445667778888899999999999999887753

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=1.1  Score=43.32  Aligned_cols=165  Identities=8%  Similarity=-0.114  Sum_probs=77.0

Q ss_pred             HhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHH--HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHH
Q 047571          422 VCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMY--SKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDAL  499 (681)
Q Consensus       422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~  499 (681)
                      ++...|+.+.|.++-....+..   ....+..++++.  --.++.+.|...|++...-|+..+.+-        ..-...
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk--------~~~~~~  246 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK--------SASMMP  246 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH--------hHhhhH
Confidence            3455677777776665555433   222333333332  235667777777777765333221110        000011


Q ss_pred             HHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571          500 GVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---DFASVPFVAAENIKMYGMCGFLECAKLVFDAVP  576 (681)
Q Consensus       500 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  576 (681)
                      +.++.+...|            +-..+.|.+..|.+.|.+.+..   +..++...|........+.|+.++|..--++..
T Consensus       247 k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  247 KKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            1111111111            1112334444444444444432   234445555555555666666666666666555


Q ss_pred             CCCh-hhHHHHH--HHHHcCCChHHHHHHHHHHHhC
Q 047571          577 VKGS-ITWTAII--EAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       577 ~~~~-~~~~~l~--~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      .-|. .++-.+.  .++...+++++|++-|++..+.
T Consensus       315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5332 2222222  2233456667777666666554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.27  E-value=0.029  Score=50.40  Aligned_cols=97  Identities=9%  Similarity=0.194  Sum_probs=78.7

Q ss_pred             CCCCCCCCCCchhHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---------------
Q 047571           62 PSSLPLHEKNPRAIYKDIQRFARQ-----NKLKEALVILDYMDQQGIPVNVTTFNALITACVRTR---------------  121 (681)
Q Consensus        62 ~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------  121 (681)
                      ..+.+...++-.+|...+..+...     +..+-....+..|.+.|+..|..+|+.||+.+-+..               
T Consensus        57 F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP  136 (406)
T KOG3941|consen   57 FEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP  136 (406)
T ss_pred             hhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc
Confidence            344556667778888888777654     667778888999999999999999999999876643               


Q ss_pred             -ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571          122 -SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF  158 (681)
Q Consensus       122 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  158 (681)
                       +-.-+..++++|...|+.||..+-..|++++++.+-.
T Consensus       137 ~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  137 QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence             2334678999999999999999999999999887653

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.25  E-value=0.018  Score=46.35  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHh
Q 047571          610 GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILT  662 (681)
Q Consensus       610 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  662 (681)
                      ...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++=..
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35678888888888888888888888888888888887777777777766543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.17  E-value=0.077  Score=48.13  Aligned_cols=95  Identities=18%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIM  657 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l  657 (681)
                      .|+.-+..+. .|++..|...|...++.. +-   .+..+..|..++...|++++|..+|..+.+.++-.|- ++.+--|
T Consensus       144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYK-SGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4776666554 566999999999998863 22   2455667889999999999999999999887766665 5788888


Q ss_pred             HHHHhhcCCHHHHHHHHHhcc
Q 047571          658 IDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       658 ~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ..+..+.|+.++|...|+++.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHH
Confidence            899999999999999888764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.15  E-value=0.15  Score=52.37  Aligned_cols=117  Identities=16%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             cCCHHHHHHHhhhCCC--CChhhHHHH-HHHHHcCCChHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHhccCCHHHHH
Q 047571          562 CGFLECAKLVFDAVPV--KGSITWTAI-IEAYGYNDLCQEALSLFDKMRNG--GFT-PNHFTFKVLLSICNQAGFADEAC  635 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~--g~~-p~~~~~~~l~~~~~~~g~~~~A~  635 (681)
                      ..+.+.|.++++.+..  |+...|.-. .+.+...|+.++|++.|++....  ..+ .....+--+.+.+.-.++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4567888888888887  887766544 34456689999999999976642  111 14456667888889999999999


Q ss_pred             HHHHHhhhcCCCCCChhHHHHH-HHHHhhcCCH-------HHHHHHHHhccCC
Q 047571          636 RIFNVMSRGYKIEALEEHYLIM-IDILTRFGRI-------EEAHRFREMSSSL  680 (681)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~~~  680 (681)
                      +.|..+.+.  ...+...|.-+ .-++...|+.       ++|.+++.++|.+
T Consensus       326 ~~f~~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  326 EYFLRLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            999999874  22233333333 3445677888       8999999888754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.15  E-value=0.5  Score=37.47  Aligned_cols=141  Identities=10%  Similarity=0.046  Sum_probs=76.4

Q ss_pred             HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          489 CIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                      +.-.|.+++..++..+....   .+..-++.++.-....-+-+-..+.++.+-+.   .|          ...+|++...
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrV   75 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRV   75 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHH
Confidence            34456677777777776652   33444555544443333434444444433321   11          1122333333


Q ss_pred             HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 047571          569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE  648 (681)
Q Consensus       569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  648 (681)
                      ...+-.+- .+....+..+.....+|+-|+-.+++.++.+.+ .+++....-+..+|.+.|+..++.+++.+.-+. |++
T Consensus        76 i~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k  152 (161)
T PF09205_consen   76 IECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK  152 (161)
T ss_dssp             HHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence            33322211 122345566778888999999999999988644 889999999999999999999999999988775 543

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.088  Score=48.43  Aligned_cols=100  Identities=14%  Similarity=-0.001  Sum_probs=82.7

Q ss_pred             CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhhhcCCCCCChhHH
Q 047571          578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG---FADEACRIFNVMSRGYKIEALEEHY  654 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~  654 (681)
                      .|...|-.|...|...|+.+.|...|.+..+.- ++|+..+..+..++....   +..++.++|+++.+.  -+-+....
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral  230 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRAL  230 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHH
Confidence            357899999999999999999999999999863 568888888888765543   466889999988763  23357788


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571          655 LIMIDILTRFGRIEEAHRFREMSSSL  680 (681)
Q Consensus       655 ~~l~~~~~~~g~~~~A~~~~~~~~~~  680 (681)
                      ..|...+...|++.+|...++.|.++
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            88889999999999999999998764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.10  E-value=0.06  Score=50.07  Aligned_cols=92  Identities=10%  Similarity=-0.051  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV--KGS----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLL  622 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~  622 (681)
                      |...+..+.+.|++++|...|+.+..  |+.    ..+--+...|...|++++|+..|+++.+.- +-   ....+..+.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg  224 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHHH
Confidence            33334444455667777766666655  442    355667788888999999999999988741 21   244555566


Q ss_pred             HHHhccCCHHHHHHHHHHhhhc
Q 047571          623 SICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       623 ~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..+...|++++|.++|+.+.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            7788889999999999988775

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.99  E-value=0.054  Score=48.77  Aligned_cols=109  Identities=13%  Similarity=0.144  Sum_probs=77.8

Q ss_pred             HhhhhcC--CCCCccHHHHHHHHHHc---CCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccC-------------
Q 047571          163 KVFDESS--SESVYPWNALLRGAVIA---GKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGAS-------------  224 (681)
Q Consensus       163 ~~~~~~~--~~~~~~~~~ll~~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------------  224 (681)
                      +.|...+  +++..+|-+.+..+...   ++++++=....++.|++.|+.-|..+|+.||+.+-+..             
T Consensus        55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H  134 (406)
T KOG3941|consen   55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH  134 (406)
T ss_pred             hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence            3444443  34455555555555433   44477777778889999999999999999999875532             


Q ss_pred             ---chhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCCh-HHHHHHHhcc
Q 047571          225 ---ALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKI-KLARRVFDET  271 (681)
Q Consensus       225 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~  271 (681)
                         +-+-+.+++++|...|+.||..+-..|++++.+.+.. .+..+++-.|
T Consensus       135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence               3345788999999999999999999999999887753 3444444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.94  E-value=0.066  Score=45.10  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCchhHHH
Q 047571           74 AIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRI-----NGLENNGFLRT  146 (681)
Q Consensus        74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  146 (681)
                      ++..++..+...|+++.|+.+++.+.... |.+...|..++.++...|+...|.+.|+.+.+     .|+.|++.+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            35556677778999999999999998775 55888999999999999999999999888753     48888876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.82  E-value=0.015  Score=42.56  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNG----GF-TPN-HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +|+.+...|...|++++|+..|++..+.    |- .|+ ..++..+..++...|++++|++++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6778888888888888888888887643    21 122 56788899999999999999999987654

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.82  E-value=0.3  Score=48.09  Aligned_cols=70  Identities=7%  Similarity=-0.064  Sum_probs=61.0

Q ss_pred             CCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 047571           65 LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNV----TTFNALITACVRTRSLVEGRLIHTHIRIN  136 (681)
Q Consensus        65 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  136 (681)
                      ....|.++..++.+..+|.+.|++++|+..|++..+.+  |+.    .+|..+..+|...|+.++|...++...+.
T Consensus        68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567778899999999999999999999999998864  443    35999999999999999999999999876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.76  E-value=0.024  Score=40.84  Aligned_cols=55  Identities=24%  Similarity=0.119  Sum_probs=47.1

Q ss_pred             HHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          622 LSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      ...|.+.+++++|.++++.+.+.   .| +...+.....++.+.|++++|.+.+++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            35788999999999999999874   33 467888899999999999999999988654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.66  E-value=1  Score=43.86  Aligned_cols=30  Identities=13%  Similarity=0.000  Sum_probs=26.0

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      -..+..++.++.-.|+.++|.+.+++|...
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            445677888999999999999999999986

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.52  E-value=0.53  Score=47.59  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=37.9

Q ss_pred             HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571          557 KMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       557 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                      .+..++|+++.|.++.++..  +...|..|.......|+++-|.+.|++..+         |..|+-.|.-.|+.+.-.+
T Consensus       326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k  394 (443)
T PF04053_consen  326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK  394 (443)
T ss_dssp             HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence            34455566666666555443  334566666666666666666666655443         3444444555555444444


Q ss_pred             HHHHh
Q 047571          637 IFNVM  641 (681)
Q Consensus       637 ~~~~~  641 (681)
                      +.+..
T Consensus       395 l~~~a  399 (443)
T PF04053_consen  395 LAKIA  399 (443)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11906 transcriptional regulator; Provisional

Probab=95.43  E-value=0.63  Score=46.07  Aligned_cols=113  Identities=14%  Similarity=0.058  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHhHh-CCCCCCHH-HHHHHHHHhcc---------ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047571          495 LDDALGVFRSMQL-SKHRPDSV-AMARMLSVSGQ---------LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG  563 (681)
Q Consensus       495 ~~~A~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  563 (681)
                      .+.|+.+|.+... +.+.|+.. .|..+-.++..         ..+..+|.+.-+...+.+ ..|+.....+..+..-.|
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            5677778888772 22455543 33333222211         112333344444444433 223444444444444444


Q ss_pred             CHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          564 FLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       564 ~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +++.|..+|++...  || ..+|-.....+.-.|+.++|.+.+++..+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            45555555554443  33 22333333333444555555555555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.40  E-value=0.19  Score=40.58  Aligned_cols=50  Identities=6%  Similarity=-0.083  Sum_probs=35.0

Q ss_pred             CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH-cCCCCChhHHHHHHHH
Q 047571          509 KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK-KDFASVPFVAAENIKM  558 (681)
Q Consensus       509 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~  558 (681)
                      ...|+..+..+++.+++..+++..|.++.+.+.+ .+++.+..+|..|++-
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3567777777777777777788888877777665 3666666666666554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.39  E-value=3  Score=40.83  Aligned_cols=126  Identities=10%  Similarity=0.095  Sum_probs=77.7

Q ss_pred             HHHHHHHhccccchHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhH-HHHHHHHHc
Q 047571          517 MARMLSVSGQLKALKLGKEIHGQVLKKD-FASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITW-TAIIEAYGY  592 (681)
Q Consensus       517 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~~~~  592 (681)
                      |...+++..+...++.|+.+|.++.+.+ +.++..++++++..++ .|+...|..+|+--..  ||...| +-.+.-+..
T Consensus       400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~  478 (660)
T COG5107         400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR  478 (660)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            4445555556666777777777777776 4556666676666554 3556666666664333  554444 334555556


Q ss_pred             CCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          593 NDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       593 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      -++-+.|..+|+..++. +..+  ...|..+++-=..-|+...+..+=+.|...
T Consensus       479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            67777777777755543 2333  456777777667777777777766666654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.30  E-value=0.14  Score=50.36  Aligned_cols=61  Identities=11%  Similarity=0.003  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH----FTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..|+.+..+|...|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|++.+++..+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555555555555555555555555542  3331    2355555555555555555555554443

>PRK15331 chaperone protein SicA; Provisional

Probab=95.26  E-value=0.21  Score=41.76  Aligned_cols=85  Identities=12%  Similarity=-0.036  Sum_probs=56.9

Q ss_pred             HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571          558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      -+-..|++++|..+|.-+..   -+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence            34456788888887775444   234445566666666778888888777766543 34555566677777778888888


Q ss_pred             HHHHHHhhh
Q 047571          635 CRIFNVMSR  643 (681)
Q Consensus       635 ~~~~~~~~~  643 (681)
                      ...|+...+
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            887777665

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.11  E-value=1.3  Score=36.79  Aligned_cols=117  Identities=17%  Similarity=0.133  Sum_probs=57.0

Q ss_pred             ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571          527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKM  606 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  606 (681)
                      .+.......+++.+.+.+ ..++...+.++..|++.+ .++....++.  ..+......++..|.+.+.++++.-++.++
T Consensus        20 ~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~   95 (140)
T smart00299       20 RNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAVELYKKD   95 (140)
T ss_pred             CCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            334444444444444443 234445555555555442 2233333331  122233444566666666666666666665


Q ss_pred             HhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh
Q 047571          607 RNGGFTPNHFTFKVLLSICNQA-GFADEACRIFNVMSRGYKIEALEEHYLIMIDILTR  663 (681)
Q Consensus       607 ~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  663 (681)
                      ..         +...+..+... ++++.|+++...-       .+...|..++..+..
T Consensus        96 ~~---------~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l~  137 (140)
T smart00299       96 GN---------FKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALLD  137 (140)
T ss_pred             cC---------HHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHHc
Confidence            32         12222333333 6777777777631       134566666665543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.96  E-value=0.16  Score=48.49  Aligned_cols=54  Identities=15%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHH
Q 047571           78 DIQRFARQNKLKEALVILDYMDQQGIPVNV----TTFNALITACVRTRSLVEGRLIHTH  132 (681)
Q Consensus        78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~  132 (681)
                      --..+++.|+....+.+|+...+-|.. |.    ..|..|.++|.-.+++.+|.++...
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h   80 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH   80 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence            346789999999999999999988743 33    3466666677777788888776543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.78  E-value=0.64  Score=38.86  Aligned_cols=133  Identities=15%  Similarity=0.064  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhHH-----HH
Q 047571          515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVA-AENIKMYGMCGFLECAKLVFDAVPVKG--SITWT-----AI  586 (681)
Q Consensus       515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-----~l  586 (681)
                      ..|..-+. ....++.++|..-|..+.+.|...-+... ..........|+-..|...|+++-...  +....     --
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            34444433 35667888888888888888766544322 333455667788888888888776621  11111     11


Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC
Q 047571          587 IEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA  649 (681)
Q Consensus       587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  649 (681)
                      ...+..+|-+++.....+.+...|-+--...-..|.-+-.+.|++..|...|+.+... ...|
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~ap  200 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAP  200 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCc
Confidence            2345567888887777777766553334555667777778888888888888887765 3444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=1.4  Score=41.13  Aligned_cols=150  Identities=12%  Similarity=0.039  Sum_probs=98.6

Q ss_pred             hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCCHHH
Q 047571          491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---DFASVPFVAAENIKMYGMCGFLEC  567 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~  567 (681)
                      ..|+..+|-..++++.+. .+.|...+...-.+|...|+-..-...+++++..   +++....+...+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            457788888888888765 4666777777778888888888777777777643   222223333444555667789999


Q ss_pred             HHHHhhhCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571          568 AKLVFDAVPVK---GSITWTAIIEAYGYNDLCQEALSLFDKMRNG---GFTPNHFTFKVLLSICNQAGFADEACRIFNVM  641 (681)
Q Consensus       568 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  641 (681)
                      |++.-++..+-   |.-+-.++...+...|++.++.+...+-.+.   +...-...|-+..-.+...+.++.|+++|+.-
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e  273 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE  273 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence            99888887772   2333345556666788888888876654432   11112234444555566678899999998753

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.58  E-value=0.9  Score=39.60  Aligned_cols=76  Identities=11%  Similarity=0.008  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571           61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING  137 (681)
Q Consensus        61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  137 (681)
                      |.+++...|.-+.+||.+---+...|+++.|.+.|+...+.+..-+-...|.-|.. --.|++..|.+-+...-..+
T Consensus        88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D  163 (297)
T COG4785          88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDD  163 (297)
T ss_pred             hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcC
Confidence            56666677777777777777777788888888888877766422222222222222 23466777766555554443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.58  E-value=0.55  Score=37.10  Aligned_cols=87  Identities=16%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             HHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCC
Q 047571          557 KMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGF  630 (681)
Q Consensus       557 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~  630 (681)
                      -+....|+++.|.+.|.+...   .....||.-..++.-+|+.++|++-+++..+..-.-..   ..|..=...|...|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            356677888888888876655   34667888888887788888888877777765322222   223333445667777


Q ss_pred             HHHHHHHHHHhhh
Q 047571          631 ADEACRIFNVMSR  643 (681)
Q Consensus       631 ~~~A~~~~~~~~~  643 (681)
                      .+.|..=|+...+
T Consensus       131 dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  131 DDAARADFEAAAQ  143 (175)
T ss_pred             hHHHHHhHHHHHH
Confidence            7888877777665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.56  E-value=1.3  Score=44.74  Aligned_cols=133  Identities=13%  Similarity=0.116  Sum_probs=69.9

Q ss_pred             HHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047571          387 GYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDY  466 (681)
Q Consensus       387 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  466 (681)
                      ...-.++++.+.+..+.=.-.. ..+..-...++.-+.+.|..+.|+++..+-.            .-.+...+.|+++.
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~  336 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI  336 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence            3445666666655553111000 0113345666677777777777776643321            12345556777777


Q ss_pred             HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571          467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK  543 (681)
Q Consensus       467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  543 (681)
                      |.++.++..  +...|..|.....+.|+++-|.+.|.+..+         +..++-.|.-.|+.+...++.+.....
T Consensus       337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            777766654  455777777777777777777777776643         344444555555555555555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=94.54  E-value=8.1  Score=41.48  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=43.7

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC-CCCChhHHHHHHHHHHh---
Q 047571          385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ-FLPNVSIITSLMIMYSK---  460 (681)
Q Consensus       385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  460 (681)
                      ...+.-.|+++.|++.+-.  ..+...|.+.+.+.+..+.-.+-.+...   ..+.... -.|...-+..||..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            4556678999999998877  3345667788877777654433222211   2221111 01222456777877776   


Q ss_pred             cCChHHHHHHHhhCCC
Q 047571          461 CGVLDYSLKLFDEMEV  476 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~  476 (681)
                      ..++.+|.+++--+..
T Consensus       340 ~td~~~Al~Y~~li~~  355 (613)
T PF04097_consen  340 ITDPREALQYLYLICL  355 (613)
T ss_dssp             TT-HHHHHHHHHGGGG
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            4678888888776654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.49  E-value=4.5  Score=38.40  Aligned_cols=127  Identities=9%  Similarity=-0.025  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CC--hhhHHHHHHHHHc--CCChHHHHHHHHHHHhCCCCCCHH-HH----
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV-KG--SITWTAIIEAYGY--NDLCQEALSLFDKMRNGGFTPNHF-TF----  618 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~-~~----  618 (681)
                      +.++..-++.+.+.++.+++.+.+.+|.. .+  ...+...+..+..  ......|...++.+....+.|... ..    
T Consensus       121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~v  200 (278)
T PF08631_consen  121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLV  200 (278)
T ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            33343444444455556666665555544 11  2234444444321  233456666666666555555442 11    


Q ss_pred             HHHHHHHhccCC------HHHHHHHHHHhhhcCCCCCChhHHHHH-------HHHHhhcCCHHHHHHHHH
Q 047571          619 KVLLSICNQAGF------ADEACRIFNVMSRGYKIEALEEHYLIM-------IDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       619 ~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~  675 (681)
                      ...+......++      .+...++++.+.+..+.+.+..+-.++       +..+.+.+++++|.++++
T Consensus       201 l~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~  270 (278)
T PF08631_consen  201 LTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE  270 (278)
T ss_pred             HHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            111222222222      455555666554444444454444433       344567889999999987

It is also involved in sporulation [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.49  E-value=6.4  Score=43.79  Aligned_cols=173  Identities=14%  Similarity=0.041  Sum_probs=96.3

Q ss_pred             HHHHHhcCChhHHHHHHHHhHhC-----CCCCCHH--HHHHHHHHhcccc--chHHHHHHHHHHH--Hc---CCCCChhH
Q 047571          486 IDSCIENGRLDDALGVFRSMQLS-----KHRPDSV--AMARMLSVSGQLK--ALKLGKEIHGQVL--KK---DFASVPFV  551 (681)
Q Consensus       486 i~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~~~--~~---~~~~~~~~  551 (681)
                      +-+-..+.++.+=+-++++++..     .+..|..  -|...+......|  -++++..+.++-.  ..   =..|+...
T Consensus       858 ~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~  937 (1265)
T KOG1920|consen  858 LVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK  937 (1265)
T ss_pred             HHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH
Confidence            34445566777777777776632     1222222  2333333333333  3444443332210  00   02344444


Q ss_pred             HHHHH----HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 047571          552 AAENI----KMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT--FKVLLSIC  625 (681)
Q Consensus       552 ~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~  625 (681)
                      +....    ..+...+.+++|.-.|+..-.     ..-.+.+|...|++.+|+.+..++..   .-+...  -..|+.-+
T Consensus       938 ~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen  938 QKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence            43333    333444666766666654332     23346667777788887777777643   223222  36788888


Q ss_pred             hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 047571          626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      ...+++-+|-++..+....         ...-+..|+++-.+++|.++..
T Consensus      1010 ~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred             HHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHH
Confidence            9999999999988866553         3444566788888999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=94.46  E-value=0.23  Score=41.47  Aligned_cols=81  Identities=15%  Similarity=0.058  Sum_probs=33.4

Q ss_pred             cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 047571          592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAH  671 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  671 (681)
                      ..|++++|..+|+-+.-.+ +-|..-|..|..+|-..+++++|+..|.....-....  +..+-....+|...|+.+.|+
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCccchHHHHHHHhCCHHHHH
Confidence            3455555555554444422 1133334444444444455555555444332211111  122333344444455555554


Q ss_pred             HHHH
Q 047571          672 RFRE  675 (681)
Q Consensus       672 ~~~~  675 (681)
                      ..|+
T Consensus       126 ~~f~  129 (165)
T PRK15331        126 QCFE  129 (165)
T ss_pred             HHHH
Confidence            4443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.44  E-value=1.3  Score=36.30  Aligned_cols=85  Identities=13%  Similarity=0.069  Sum_probs=59.8

Q ss_pred             CCchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHH
Q 047571           70 KNPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTK  147 (681)
Q Consensus        70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  147 (681)
                      .++..+..-.....+.|++++|.+.|+.+..+-  -+-...+-..++.++.+.++++.|...++..++..+.....-|-.
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            344456666777788899999999999987762  122445667788888889999999999988888765433344555


Q ss_pred             HHHHhhc
Q 047571          148 LVKMYTS  154 (681)
Q Consensus       148 l~~~~~~  154 (681)
                      .+.+++.
T Consensus        88 Y~~gL~~   94 (142)
T PF13512_consen   88 YMRGLSY   94 (142)
T ss_pred             HHHHHHH
Confidence            5555543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=4.4  Score=37.61  Aligned_cols=140  Identities=15%  Similarity=0.111  Sum_probs=92.3

Q ss_pred             hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHH
Q 047571          524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEA  599 (681)
Q Consensus       524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a  599 (681)
                      ....|+...+...++......-. +....-.++.+|...|+.+.|..++..++...    ......-|..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            34556666777777666654322 25566678889999999999999999888722    11222334455555555555


Q ss_pred             HHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc-CCCCCChhHHHHHHHHHhhcCCHH
Q 047571          600 LSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG-YKIEALEEHYLIMIDILTRFGRIE  668 (681)
Q Consensus       600 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~  668 (681)
                      ..+-++.-.   .| |...-..+...+...|+.+.|.+.+-.+.++ .+.. |...-..|++.+.--|..+
T Consensus       223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence            555555554   45 7777778889999999999999877666543 3333 4566777777777777433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=0.51  Score=45.42  Aligned_cols=93  Identities=14%  Similarity=0.027  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMID  659 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~  659 (681)
                      .+++.+.-+|.+.+++.+|++.-++.++.+ ++|......=..+|...|+++.|+..|+.+.+   +.|+ ...-+.|+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIK  333 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHH
Confidence            467778888888888888888888888865 66777777778888888888888888887765   3553 555566665


Q ss_pred             HHhhcCCHHHH-HHHHHhc
Q 047571          660 ILTRFGRIEEA-HRFREMS  677 (681)
Q Consensus       660 ~~~~~g~~~~A-~~~~~~~  677 (681)
                      +--+..+..+. .+++.+|
T Consensus       334 l~~k~~~~~~kekk~y~~m  352 (397)
T KOG0543|consen  334 LKQKIREYEEKEKKMYANM  352 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            55554444333 4455554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=9.2  Score=40.89  Aligned_cols=215  Identities=9%  Similarity=0.026  Sum_probs=112.1

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHH----HhhCC------------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDY----MDQQG------------IPVNVTTFNALITACVRTRSLVEGRLIHTHIR  134 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  134 (681)
                      ++...++++.++...+++-.-.-++..    +...+            ..........-|..+.+...+..|..+.+.- 
T Consensus       282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-  360 (933)
T KOG2114|consen  282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-  360 (933)
T ss_pred             CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc-
Confidence            344567788888888876443322222    22222            1223344556666677777777776665432 


Q ss_pred             HhCCCCch--hHHHHHHHHhhcCCChhHHHHhhhh-cCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChh
Q 047571          135 INGLENNG--FLRTKLVKMYTSCGSFEDAEKVFDE-SSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVY  211 (681)
Q Consensus       135 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  211 (681)
                        +..++.  .....-...+-+.|++++|...+-+ +..-+   -..++.-|....  ....-..+++.+.+.|+. +..
T Consensus       361 --~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le---~s~Vi~kfLdaq--~IknLt~YLe~L~~~gla-~~d  432 (933)
T KOG2114|consen  361 --HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE---PSEVIKKFLDAQ--RIKNLTSYLEALHKKGLA-NSD  432 (933)
T ss_pred             --CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC---hHHHHHHhcCHH--HHHHHHHHHHHHHHcccc-cch
Confidence              222221  1222333444567888888766543 22111   133444454444  556666667777777754 444


Q ss_pred             hHHHHHHHhhccCchhhhHHHHHHHHHhCC-CCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 047571          212 TFSCVIKSFAGASALMQGLKTHALLIKNGF-VDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNR  290 (681)
Q Consensus       212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~  290 (681)
                      .-..|+.+|.+.++.+.-.++.+.-. .|. .-|   ....+..+.+.+-.++|..+-..... +......++   -..+
T Consensus       433 httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~  504 (933)
T KOG2114|consen  433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLH  504 (933)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhc
Confidence            45677888888887777666554433 221 112   22344455555555555554443322 233333332   2456


Q ss_pred             ChHHHHHHHHHH
Q 047571          291 LRWEALDCARWM  302 (681)
Q Consensus       291 ~~~~a~~~~~~m  302 (681)
                      ++++|++.+..|
T Consensus       505 ny~eAl~yi~sl  516 (933)
T KOG2114|consen  505 NYEEALRYISSL  516 (933)
T ss_pred             CHHHHHHHHhcC
Confidence            677777776655

>PRK11906 transcriptional regulator; Provisional

Probab=93.94  E-value=0.92  Score=44.94  Aligned_cols=144  Identities=8%  Similarity=-0.077  Sum_probs=98.7

Q ss_pred             chHHHHHHHHHHHH-cCCCCC-hhHHHHHHHHHHhc---------CCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCC
Q 047571          529 ALKLGKEIHGQVLK-KDFASV-PFVAAENIKMYGMC---------GFLECAKLVFDAVPV---KGSITWTAIIEAYGYND  594 (681)
Q Consensus       529 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~  594 (681)
                      ..+.|..+|.+... ....|+ ...|..+..++...         ....+|.++-++..+   .|..+...+..+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            56788888888883 234554 55555555444332         234456666665555   45666666777777778


Q ss_pred             ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 047571          595 LCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRF  673 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  673 (681)
                      +++.|..+|++....  .| ...+|......+.-.|+.++|.+.+++..+-.....-.......++.|+..+ +++|+++
T Consensus       353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~  429 (458)
T PRK11906        353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL  429 (458)
T ss_pred             chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence            899999999999985  55 5677888888888999999999999976543233333566667777888665 7788876


Q ss_pred             HH
Q 047571          674 RE  675 (681)
Q Consensus       674 ~~  675 (681)
                      +-
T Consensus       430 ~~  431 (458)
T PRK11906        430 YY  431 (458)
T ss_pred             Hh
Confidence            54

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.70  E-value=3.7  Score=42.32  Aligned_cols=85  Identities=15%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             HHHHHhcCCHHHHHHHhhhCCC-------CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hhc
Q 047571          556 IKMYGMCGFLECAKLVFDAVPV-------KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI-CNQ  627 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~  627 (681)
                      .+.+...|++++|.+.|++...       -....+--+...+....++++|.+.|.++.+.. .-+..+|.-+..+ +..
T Consensus       274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~  352 (468)
T PF10300_consen  274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM  352 (468)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence            3445555666666666654332       112244456667777889999999999988854 3345555544443 456


Q ss_pred             cCCH-------HHHHHHHHHh
Q 047571          628 AGFA-------DEACRIFNVM  641 (681)
Q Consensus       628 ~g~~-------~~A~~~~~~~  641 (681)
                      .|+.       ++|.++|.++
T Consensus       353 l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  353 LGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             hccchhhhhhHHHHHHHHHHH
Confidence            6777       7788888766

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.67  E-value=3  Score=33.31  Aligned_cols=136  Identities=12%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCChH
Q 047571          389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSII---TSLMIMYSKCGVLD  465 (681)
Q Consensus       389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~  465 (681)
                      .-.|..++..+++.+....   .+..-|+.+|--....-+-+-..+.+   ..-|--.|....   ..++.+|.+.|.. 
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~L---dsIGkiFDis~C~NlKrVi~C~~~~n~~-   85 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETL---DSIGKIFDISKCGNLKRVIECYAKRNKL-   85 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHH---HHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHH---HHHhhhcCchhhcchHHHHHHHHHhcch-
Confidence            3456666777776666554   24444555444333333333333333   233322222221   2334444443332 


Q ss_pred             HHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          466 YSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       466 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                                   .......+..+..+|+-+.-.+++.++... -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus        86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence                         223344566677778888777788777653 367777777777788888888888777777766664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK09687 putative lyase; Provisional

Probab=93.59  E-value=6.7  Score=37.14  Aligned_cols=216  Identities=8%  Similarity=-0.030  Sum_probs=112.0

Q ss_pred             CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----HHHHHHHhhC--CCCCcchHH
Q 047571          410 RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL----DYSLKLFDEM--EVRNVISWT  483 (681)
Q Consensus       410 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~--~~~~~~~~~  483 (681)
                      .+|.......+.++...|..+-... +..+..   .++...-...+.++.+.|+.    +++...+..+  .+++...-.
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~~~~~-l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~  109 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQDVFRL-AIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA  109 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcchHHHH-HHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence            3566666777777777665333333 333332   34555555666667776653    4566666654  345655555


Q ss_pred             HHHHHHHhcCCh-----hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          484 AMIDSCIENGRL-----DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       484 ~li~~~~~~~~~-----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      ..+.++...+..     ..+...+.....   .++...-...+.+++..++ ..+...+-.+.+   .++..+-...+.+
T Consensus       110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a  182 (280)
T PRK09687        110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA  182 (280)
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence            555555554321     223333333332   3344555555666666554 344444444443   3344555555555


Q ss_pred             HHhcC-CHHHHHHH-hhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571          559 YGMCG-FLECAKLV-FDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       559 ~~~~g-~~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                      +++.+ ....+... ...+..++...-...+.++.+.|+ ..|+..+-+..+.+   +  .....+.++...|+. +|+.
T Consensus       183 Lg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p  255 (280)
T PRK09687        183 LNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP  255 (280)
T ss_pred             HhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence            55543 12233333 333333555566666666666666 45555555555532   1  233556666666663 5666


Q ss_pred             HHHHhhh
Q 047571          637 IFNVMSR  643 (681)
Q Consensus       637 ~~~~~~~  643 (681)
                      .+..+.+
T Consensus       256 ~L~~l~~  262 (280)
T PRK09687        256 VLDTLLY  262 (280)
T ss_pred             HHHHHHh
Confidence            6666554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.52  E-value=1.2  Score=42.14  Aligned_cols=220  Identities=10%  Similarity=0.034  Sum_probs=127.6

Q ss_pred             hhccCChhHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChHHHHHHHhhC----CC---C--CcchHHHHHHHHHh
Q 047571          423 CSQLKALNHGKEIHAYAVKN--QFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM----EV---R--NVISWTAMIDSCIE  491 (681)
Q Consensus       423 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~---~--~~~~~~~li~~~~~  491 (681)
                      +....+.++|...|......  +...-..+|..+..+.++.|.++++...--.-    .+   .  -...|..+..++.+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888877765542  22234456777888888888888776543211    11   1  12345555555555


Q ss_pred             cCChhHHHHHHHHhHh-CCCCC---CHHHHHHHHHHhccccchHHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhc
Q 047571          492 NGRLDDALGVFRSMQL-SKHRP---DSVAMARMLSVSGQLKALKLGKEIHGQVLKKD-----FASVPFVAAENIKMYGMC  562 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~  562 (681)
                      ..++.+++.+-+.-.. .|..|   ......++-.++.-.+.++++.+.|+...+..     ......++..|...|+..
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            5555555555443332 12222   12234445666777778888888888777532     122355677788888888


Q ss_pred             CCHHHHHHHhhhCCC-------CCh-hhH-----HHHHHHHHcCCChHHHHHHHHHHH----hCCCCC-CHHHHHHHHHH
Q 047571          563 GFLECAKLVFDAVPV-------KGS-ITW-----TAIIEAYGYNDLCQEALSLFDKMR----NGGFTP-NHFTFKVLLSI  624 (681)
Q Consensus       563 g~~~~a~~~~~~~~~-------~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~m~----~~g~~p-~~~~~~~l~~~  624 (681)
                      .++++|.-+..+...       .|. .-|     -.|..++...|....|.+.-++..    ..|-.| -......+.+.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            888877666554333       221 112     223445556677666666666543    334333 33455667777


Q ss_pred             HhccCCHHHHHHHHHHhh
Q 047571          625 CNQAGFADEACRIFNVMS  642 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~  642 (681)
                      |...|+.+.|..-++...
T Consensus       256 yR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHhcccHhHHHHHHHHHH
Confidence            888888888777777544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.47  E-value=0.31  Score=30.63  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVL  621 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  621 (681)
                      +|..+...|...|++++|+++|++.++.. +-|...+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence            45556666666666666666666666642 2244444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.39  E-value=2.2  Score=40.49  Aligned_cols=221  Identities=9%  Similarity=0.018  Sum_probs=136.8

Q ss_pred             HHhCCChHHHHHHHHHHHHc--CcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH--hCCCCCh---hHHHHHHHHHHh
Q 047571          388 YVSNGRLEQALRSIAWMQQE--GFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK--NQFLPNV---SIITSLMIMYSK  460 (681)
Q Consensus       388 ~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~---~~~~~l~~~~~~  460 (681)
                      +....+.++|+..+.+-..+  ...-.-.+|..+..+.++.|.++++...--.-+.  .......   ..|..+..++.+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888998888776553  1222345677788888888888877654332222  1111122   223334444444


Q ss_pred             cCChHHHHHHHhhCCC-CCc-------chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-----CHHHHHHHHHHhccc
Q 047571          461 CGVLDYSLKLFDEMEV-RNV-------ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP-----DSVAMARMLSVSGQL  527 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~-~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~  527 (681)
                      .-++.+++.+-+.-.. |..       ....++..++...+.++++++.|+...+--...     ....+..+-+.+...
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            4455555554433221 211       233456677888888999999999876532222     234678888899999


Q ss_pred             cchHHHHHHHHHHHH----cCCCCChhHH-----HHHHHHHHhcCCHHHHHHHhhhCCC-----CCh----hhHHHHHHH
Q 047571          528 KALKLGKEIHGQVLK----KDFASVPFVA-----AENIKMYGMCGFLECAKLVFDAVPV-----KGS----ITWTAIIEA  589 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~l~~~  589 (681)
                      .|++++.-+..+..+    .++.--..-|     -.+..++-..|.+..|.+.-++..+     -|.    .....+.+.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999877766553    2322222222     2344566777888888888776555     332    344567888


Q ss_pred             HHcCCChHHHHHHHHHHHh
Q 047571          590 YGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       590 ~~~~~~~~~a~~~~~~m~~  608 (681)
                      |...|+.+.|..-|++...
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            9999999999988888653

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.34  E-value=1.9  Score=34.17  Aligned_cols=90  Identities=13%  Similarity=-0.012  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchh---HHHHHHHHh
Q 047571           76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGF---LRTKLVKMY  152 (681)
Q Consensus        76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~  152 (681)
                      ..-.-+++..|+.+.|++.|.+.... .|-..+.||.-.+++.-.|+.++|+.-+++..+..-.....   .|..-...|
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            34456788899999999999998876 35688999999999999999999999998888764233322   233344456


Q ss_pred             hcCCChhHHHHhhh
Q 047571          153 TSCGSFEDAEKVFD  166 (681)
Q Consensus       153 ~~~g~~~~a~~~~~  166 (681)
                      ...|+.+.|..-|+
T Consensus       126 Rl~g~dd~AR~DFe  139 (175)
T KOG4555|consen  126 RLLGNDDAARADFE  139 (175)
T ss_pred             HHhCchHHHHHhHH
Confidence            66788888877665

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.33  E-value=14  Score=39.88  Aligned_cols=269  Identities=8%  Similarity=-0.042  Sum_probs=131.6

Q ss_pred             chHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc
Q 047571          347 LFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL  426 (681)
Q Consensus       347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  426 (681)
                      ...-..-+..+.+.+++......+..- ..+...-.....+....|+.++|....+.+-..|.. ....+..++..+.+.
T Consensus        99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~  176 (644)
T PRK11619         99 RSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS  176 (644)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence            333344455556667777776633222 235555566677777788877777666666554422 333444455544443


Q ss_pred             CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhH
Q 047571          427 KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQ  506 (681)
Q Consensus       427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~  506 (681)
                      |.+.                +..++.. +......|+...|..+...+..........++..+.   +...+...+..  
T Consensus       177 g~lt----------------~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~--  234 (644)
T PRK11619        177 GKQD----------------PLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART--  234 (644)
T ss_pred             CCCC----------------HHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc--
Confidence            3322                2222222 223334555666655555552211112222222221   12222221111  


Q ss_pred             hCCCCCCHHHHHHHHHHhc--cccchHHHHHHHHHHHHc-CCCCC--hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571          507 LSKHRPDSVAMARMLSVSG--QLKALKLGKEIHGQVLKK-DFASV--PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG  579 (681)
Q Consensus       507 ~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~  579 (681)
                         +.|+...-..++-++.  ...+.+.|...+...... ++.+.  ..+...+.......+...++...++....  .+
T Consensus       235 ---~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~  311 (644)
T PRK11619        235 ---TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQS  311 (644)
T ss_pred             ---cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCC
Confidence               1122211111111111  123446666666655332 22222  12223333333333225566666665544  24


Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .....--+......++++.+...+..|-... .-...-...+..++...|+.++|..+|+.+..
T Consensus       312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        312 TSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             cHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            4444444555557888888888888875432 22334445677777778999999999987743

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.24  E-value=9.2  Score=37.67  Aligned_cols=76  Identities=8%  Similarity=0.141  Sum_probs=50.8

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 047571           63 SSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLE  139 (681)
Q Consensus        63 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  139 (681)
                      ..+...|.|..+|-.+++-+..++..++..+++++|... ++.-..++..-+.+-....++..+..+|..-......
T Consensus        33 erIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~  108 (660)
T COG5107          33 ERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN  108 (660)
T ss_pred             HHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence            344455667777888888888888888888888888654 3344455666666555566777777777766655433

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.02  E-value=2.3  Score=40.44  Aligned_cols=64  Identities=6%  Similarity=-0.018  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHhHhCCCCCCHH--HHHHHHHHhcccc--chHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          495 LDDALGVFRSMQLSKHRPDSV--AMARMLSVSGQLK--ALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       495 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      .+.++.+|+.+.+.|+..+..  ....++..+....  ...++.++++.+.+.|+++....|..+.-+
T Consensus       159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence            356677788888877665433  3444444443332  255778888888888888777766555433

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.93  E-value=4.7  Score=33.45  Aligned_cols=126  Identities=10%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      ...++..+...+.......+++.+...+ ..+....+.++..|++... .....++..      ..+..-...+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            3445555555566666666666666554 2444555666666654422 222222221      1122233445566666


Q ss_pred             cCCHHHHHHHhhhCCCCChhhHHHHHHHHHcC-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          562 CGFLECAKLVFDAVPVKGSITWTAIIEAYGYN-DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      .+.++++..++.++..     |...+..+... ++.+.|.+.+.+      ..+...|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            6666666666655432     33333334444 677777776664      124556666665554

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.75  E-value=3  Score=39.67  Aligned_cols=127  Identities=12%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc--c----cchHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCH
Q 047571          495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ--L----KALKLGKEIHGQVLKKDFAS---VPFVAAENIKMYGMCGFL  565 (681)
Q Consensus       495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~  565 (681)
                      +++.+.+++.|.+.|++-+..+|-+.......  .    .....+..+++.|.+...-.   +...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788999999998888777664333322  2    23567788888888753221   12222222211  22332


Q ss_pred             ----HHHHHHhhhCCC-----CC-hhhHHHHHHHHHcCCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571          566 ----ECAKLVFDAVPV-----KG-SITWTAIIEAYGYNDL--CQEALSLFDKMRNGGFTPNHFTFKVLLS  623 (681)
Q Consensus       566 ----~~a~~~~~~~~~-----~~-~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l~~  623 (681)
                          ++++.+++.+..     .| ......++..+.....  ..++.++++.+.+.|+++....|..+.-
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence                334444443333     11 1222222222221111  3456666777777776666555554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.41  E-value=3.3  Score=33.94  Aligned_cols=55  Identities=16%  Similarity=0.031  Sum_probs=34.6

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      -.....+.|++++|.+.|+.+..  |.    ...--.++.+|...+++++|+..+++.++.
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34444566777777777776666  22    223445666777777777777777777764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.40  E-value=0.43  Score=29.97  Aligned_cols=38  Identities=16%  Similarity=0.111  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 047571           73 RAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFN  111 (681)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  111 (681)
                      .++..+...|.+.|++++|+++|++..+.. |-|...+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~   39 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence            456667777777777777777777776653 23444333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.25  E-value=1.5  Score=40.78  Aligned_cols=78  Identities=13%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYLIM  657 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l  657 (681)
                      ++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+    ..|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            34445555555566666666666665531 22555566666666666666666665555433    34555555544444


Q ss_pred             HHH
Q 047571          658 IDI  660 (681)
Q Consensus       658 ~~~  660 (681)
                      .++
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.14  E-value=1  Score=41.16  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=26.7

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          586 IIEAYGYNDLCQEALSLFDKMRNGG-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       586 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      |..++...|++++|..+|..+.+.- -.| -+..+.-|.....+.|+.++|..+|+++.+.
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3444444455555555554444421 001 1233444444455555555555555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.06  E-value=20  Score=38.57  Aligned_cols=183  Identities=12%  Similarity=0.021  Sum_probs=102.6

Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHH----HHhC----------C--CCchhHHHHHHHHhhcCCChhHHHHhhhhcC
Q 047571          106 NVTTFNALITACVRTRSLVEGRLIHTHI----RING----------L--ENNGFLRTKLVKMYTSCGSFEDAEKVFDESS  169 (681)
Q Consensus       106 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~----------~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  169 (681)
                      +....+.++.++...+.+-.-.-++...    ...+          .  ....-....-+..+++...++.|..+-+.-.
T Consensus       282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~  361 (933)
T KOG2114|consen  282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH  361 (933)
T ss_pred             CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence            3445677777777776654433333332    2222          0  1112233445666777777777777766432


Q ss_pred             CCCCccHHHHH----HHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCc
Q 047571          170 SESVYPWNALL----RGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYL  245 (681)
Q Consensus       170 ~~~~~~~~~ll----~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~  245 (681)
                      .+ ...-..+.    .-+.+.|  ++++|...|-+-... +.|     ..++.-|....+...-..+++.+.+.|+... 
T Consensus       362 ~d-~d~~~~i~~kYgd~Ly~Kg--df~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-  431 (933)
T KOG2114|consen  362 LD-EDTLAEIHRKYGDYLYGKG--DFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANS-  431 (933)
T ss_pred             CC-HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccc-
Confidence            22 11222222    2233445  888888887764322 223     2355666666667777777888888886443 


Q ss_pred             HHHhHHHHHHHhcCChHHHHHHHhccCCCCh-hhHHHHHHHHHhcCChHHHHHH
Q 047571          246 ILRTSLIDMYFKCGKIKLARRVFDETGDRDI-VVWGSMIAGFAHNRLRWEALDC  298 (681)
Q Consensus       246 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~  298 (681)
                      ..-+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|..+
T Consensus       432 dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  432 DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence            4446788899999988888887776552111 1233444444445545554444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=91.82  E-value=10  Score=34.64  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=37.8

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          587 IEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+-|.+.|.+..|..-+++|++. .+-..   ..+-.+..+|...|..++|...-.-+..
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            45567788888888888888876 33322   3455566778888888887777665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.74  E-value=4.7  Score=40.34  Aligned_cols=145  Identities=10%  Similarity=0.058  Sum_probs=88.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047571          484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG  563 (681)
Q Consensus       484 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  563 (681)
                      .+|.--.+..+...-++.-++..+  +.||..+.-.+ -+-.......++.+++++..+.+-.    .       +.+..
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~  238 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQ  238 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHH----h-------hchhh
Confidence            344444566777777777777776  35655433222 2333445678888888887765311    0       11100


Q ss_pred             CHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHH
Q 047571          564 FLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRI  637 (681)
Q Consensus       564 ~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~  637 (681)
                      ..+..-..++.....+    ..+-..+..++.+.|+.++|++.+++|.+.. ++  +......|+.++...+.+.++..+
T Consensus       239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~l  317 (539)
T PF04184_consen  239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQAL  317 (539)
T ss_pred             hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence            0011011111111122    3333456666778999999999999998753 33  456788999999999999999999


Q ss_pred             HHHhhh
Q 047571          638 FNVMSR  643 (681)
Q Consensus       638 ~~~~~~  643 (681)
                      +.+..+
T Consensus       318 L~kYdD  323 (539)
T PF04184_consen  318 LAKYDD  323 (539)
T ss_pred             HHHhcc
Confidence            997644

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.68  E-value=9.7  Score=34.25  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS  459 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  459 (681)
                      .|.....+|-...++++|...+.+..+. ..-+...|.       ..+.++.|.-+.+++.+.  +--...|+.-..+|.
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence            3444555666666777766655554321 111111111       112233444444444332  112234455556666


Q ss_pred             hcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhH
Q 047571          460 KCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQ  506 (681)
Q Consensus       460 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~  506 (681)
                      .+|.++-|-..+++.-+            ..+..++++|+++|++..
T Consensus       103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral  137 (308)
T KOG1585|consen  103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL  137 (308)
T ss_pred             HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence            77766666555554321            223445666666666554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.67  E-value=0.32  Score=28.94  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=16.4

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHh
Q 047571          654 YLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       654 ~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      |..|.++|.+.|++++|++++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            56677777777777777777776

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.63  E-value=0.12  Score=43.25  Aligned_cols=85  Identities=15%  Similarity=0.105  Sum_probs=64.8

Q ss_pred             HHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHH
Q 047571          215 CVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE  294 (681)
Q Consensus       215 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  294 (681)
                      .++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++....   .-...++..|.+.|.+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            35777888889999999999999887777788999999999999888899888884333   334566777777777777


Q ss_pred             HHHHHHHH
Q 047571          295 ALDCARWM  302 (681)
Q Consensus       295 a~~~~~~m  302 (681)
                      +.-++.++
T Consensus        89 a~~Ly~~~   96 (143)
T PF00637_consen   89 AVYLYSKL   96 (143)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHc
Confidence            77776654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.53  E-value=7.9  Score=32.94  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=21.0

Q ss_pred             HHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHh
Q 047571          232 THALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFD  269 (681)
Q Consensus       232 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  269 (681)
                      .++.+.+.+++|+...+..+++.+.+.|++..-..++.
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq   53 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ   53 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            34444455566666666666666666666555444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.48  E-value=0.42  Score=28.38  Aligned_cols=23  Identities=9%  Similarity=0.239  Sum_probs=11.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDK  605 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~  605 (681)
                      |+.|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444555555555555555554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.35  E-value=2.6  Score=36.62  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH--FTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+..+...|.+.|+.+.|++.|.++.+....+..  ..+-.++......|++..+...+.+...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3445555555555555555555555554333322  3344555555555555555555555433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.29  E-value=2  Score=41.64  Aligned_cols=63  Identities=11%  Similarity=0.046  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK  543 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  543 (681)
                      .++..+..+|.+.+++.+|++.-.+....+ ++|....-.--.+|...|+++.|+..|.++++.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            356666667777777777777777776654 445555555556666666666666666666654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.10  E-value=2.2  Score=39.71  Aligned_cols=76  Identities=11%  Similarity=0.118  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCchhHHHHHH
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRI-----NGLENNGFLRTKLV  149 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~  149 (681)
                      +..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|...|+.+.+     .|+.|...+.....
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            4455667777777777777777777664 45777777777777777777777777777665     36677666655554


Q ss_pred             HH
Q 047571          150 KM  151 (681)
Q Consensus       150 ~~  151 (681)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            44

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.07  E-value=8.9  Score=32.65  Aligned_cols=57  Identities=14%  Similarity=0.081  Sum_probs=35.2

Q ss_pred             HhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047571          248 RTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIR  304 (681)
Q Consensus       248 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  304 (681)
                      +..+++.+...|++-+|+++.+....-+......++.+-.+.++..--..+++-..+
T Consensus        92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344566677777788887777765554445555666666666665555555554444

>PRK09687 putative lyase; Provisional

Probab=90.84  E-value=15  Score=34.84  Aligned_cols=138  Identities=11%  Similarity=-0.033  Sum_probs=72.0

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc-chHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047571          478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK-ALKLGKEIHGQVLKKDFASVPFVAAENI  556 (681)
Q Consensus       478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  556 (681)
                      +..+-...+.++.+.++ ++++..+-.+.+   .++...-...+.++...+ ....+...+..+..   .++..+-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            33333344444444443 334444444443   233333333333444332 12233333333332   34556666667


Q ss_pred             HHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571          557 KMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       557 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  627 (681)
                      .++++.|+......+++.+..++  .....+.++...|.. +|+..+.++.+.  .||...-...+++|.+
T Consensus       214 ~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        214 IGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence            77777777544444444444444  234567777777874 788888888874  4577776666666643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.77  E-value=14  Score=34.44  Aligned_cols=57  Identities=11%  Similarity=0.123  Sum_probs=45.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCC
Q 047571          114 ITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE  171 (681)
Q Consensus       114 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  171 (681)
                      .......|++..|..+|+...... +-+...--.+..+|...|+.+.|..+++.++..
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            345567888999999999888776 444566677888999999999999999988743

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.58  E-value=9.7  Score=32.23  Aligned_cols=132  Identities=15%  Similarity=0.066  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChh-HHHHH--H
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPF-VAAEN--I  556 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~  556 (681)
                      .|...+. +.+.++.++|+.-|.++.+-|...-.. ....+.......|+...|...|+++-+....|-+. -...|  .
T Consensus        61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            3443333 466788899999999998877543222 22223344567788999999999887754444322 11112  2


Q ss_pred             HHHHhcCCHHHHHHHhhhCCCCC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571          557 KMYGMCGFLECAKLVFDAVPVKG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP  613 (681)
Q Consensus       557 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  613 (681)
                      .++...|-++......+.+..+.    ...-..|.-+-.+.|++.+|.+.|..+......|
T Consensus       140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            34566788888888887776643    2234556666778999999999999887654445

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.52  E-value=21  Score=36.02  Aligned_cols=167  Identities=14%  Similarity=0.036  Sum_probs=98.4

Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHH-HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571          453 SLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMI-DSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK  531 (681)
Q Consensus       453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  531 (681)
                      .++.-..+..+.+.-.+.-++..+-+..+-.+++ -+--......+|.++|++..+.|-    ..+       .+.....
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~  241 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQ  241 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhh
Confidence            3444455556666666666665553333222222 222234568899999999876541    111       1111111


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC---hhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571          532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG---SITWTAIIEAYGYNDLCQEALSLFDKM  606 (681)
Q Consensus       532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m  606 (681)
                      ..-..++...+....+-..+-..+..+..+.|+.++|.+.++++.+  |.   ......|+.++...+.+.++..++.+-
T Consensus       242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            1112223333333444455556788888899999999999998875  33   335677999999999999999999997


Q ss_pred             HhCCCCCCH-HHHHHHHHHHhccCC
Q 047571          607 RNGGFTPNH-FTFKVLLSICNQAGF  630 (681)
Q Consensus       607 ~~~g~~p~~-~~~~~l~~~~~~~g~  630 (681)
                      .+-..+.+. .+|+..+-.+...|+
T Consensus       322 dDi~lpkSAti~YTaALLkaRav~d  346 (539)
T PF04184_consen  322 DDISLPKSATICYTAALLKARAVGD  346 (539)
T ss_pred             ccccCCchHHHHHHHHHHHHHhhcc
Confidence            654433333 446655444444443

The molecular function of this protein is uncertain.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.23  E-value=20  Score=38.51  Aligned_cols=70  Identities=16%  Similarity=0.086  Sum_probs=41.4

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh-------hHHHHHHHHHHHhCCCCch
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSL-------VEGRLIHTHIRINGLENNG  142 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~  142 (681)
                      ......+|--|.|.|++++|.++.+..... .......|...+..+....+-       +....-|++..+.....|+
T Consensus       111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp  187 (613)
T PF04097_consen  111 GDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP  187 (613)
T ss_dssp             TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred             CCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence            334567788888899999998888655443 455667778888888765332       2344445555444332244

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.87  E-value=57  Score=40.01  Aligned_cols=287  Identities=13%  Similarity=0.054  Sum_probs=138.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhh-cCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhH
Q 047571          353 LVDMYCKCRDMNSAWRVFYE-TEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNH  431 (681)
Q Consensus       353 l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  431 (681)
                      +...|...+++|...-+... ..+++  .+ .-|--....|++..|..-|+.+...+ ++...+++-++......|.+..
T Consensus      1426 lq~lY~~i~dpDgV~Gv~~~r~a~~s--l~-~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t 1501 (2382)
T KOG0890|consen 1426 LQNLYGSIHDPDGVEGVSARRFADPS--LY-QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLST 1501 (2382)
T ss_pred             HHHHHHhcCCcchhhhHHHHhhcCcc--HH-HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhH
Confidence            33355666666555555442 22221  12 22333556788888888888887753 2235667766666666666666


Q ss_pred             HHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHH--HHHHHhcCChhH--HHHHHHHhH
Q 047571          432 GKEIHAYAVKNQFLPNVSII-TSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAM--IDSCIENGRLDD--ALGVFRSMQ  506 (681)
Q Consensus       432 a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~--A~~~~~~m~  506 (681)
                      +....+...... .+....+ +.=+.+-.+.++++..+....   ..+..+|.+.  ...+.+..+-+.  -.+..+-++
T Consensus      1502 ~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r 1577 (2382)
T KOG0890|consen 1502 EILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSR 1577 (2382)
T ss_pred             HHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            655444433322 2222222 222444467777777777666   4455555544  222222222111  112222222


Q ss_pred             hCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CChh
Q 047571          507 LSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KGSI  581 (681)
Q Consensus       507 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~  581 (681)
                      +.-+        .-+.+|+..|.+..                  .|..+++...-+.-....+. +.....     .+..
T Consensus      1578 ~~~i--------~~lsa~s~~~Sy~~------------------~Y~~~~kLH~l~el~~~~~~-l~~~s~~~~s~~~sd 1630 (2382)
T KOG0890|consen 1578 ELVI--------ENLSACSIEGSYVR------------------SYEILMKLHLLLELENSIEE-LKKVSYDEDSANNSD 1630 (2382)
T ss_pred             HHhh--------hhHHHhhccchHHH------------------HHHHHHHHHHHHHHHHHHHH-hhccCccccccccch
Confidence            2111        11222222222112                  22222222222211111111 111111     1111


Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHH-HHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDK-MRNG----GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL  655 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~-m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  655 (681)
                      -|..-+..-....+..+-+-.+++ +...    +..- -..+|....+...++|.++.|...+-...+. . .|  ..+.
T Consensus      1631 ~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~--~i~~ 1706 (2382)
T KOG0890|consen 1631 NWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-R-LP--EIVL 1706 (2382)
T ss_pred             hHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cc--hHHH
Confidence            222222111111112221111221 2221    2222 3578888888999999999999888776664 2 33  6677


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhcc
Q 047571          656 IMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       656 ~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ...+.++..|+...|+.++++..
T Consensus      1707 E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHH
Confidence            78888999999999999988754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=89.86  E-value=15  Score=33.46  Aligned_cols=83  Identities=10%  Similarity=-0.010  Sum_probs=61.3

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL  148 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  148 (681)
                      ++..+..-...-.+.|++++|.+.|+.+..+.  -+-...+-..++-++-+.++++.|....+...+.-+.....-|-.-
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            44556666777888999999999999998663  2335566777788888999999999999998887544444445555


Q ss_pred             HHHhh
Q 047571          149 VKMYT  153 (681)
Q Consensus       149 ~~~~~  153 (681)
                      |.+++
T Consensus       113 lkgLs  117 (254)
T COG4105         113 LKGLS  117 (254)
T ss_pred             HHHHH
Confidence            55555

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=89.79  E-value=15  Score=33.32  Aligned_cols=214  Identities=15%  Similarity=0.064  Sum_probs=113.7

Q ss_pred             CChhHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhcCChhHHHH
Q 047571          427 KALNHGKEIHAYAVKNQFL-PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RNVISWTAMIDSCIENGRLDDALG  500 (681)
Q Consensus       427 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~  500 (681)
                      +....+...+......... .....+......+...+....+...+.....     .....+......+...+++..+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4444444555444443322 1245666666777777777777777666542     233455555666666777777777


Q ss_pred             HHHHhHhCCCCCCHHHHHHHHH-HhccccchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571          501 VFRSMQLSKHRPDSVAMARMLS-VSGQLKALKLGKEIHGQVLKKDF--ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV  577 (681)
Q Consensus       501 ~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  577 (681)
                      .+.........+. ........ .+...|+.+.+...+........  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            7777766443331 11222222 56667777777777776644211  11222333333334455666666666655544


Q ss_pred             --CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          578 --KG--SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       578 --~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                        ++  ...+..+...+...++++.|...+......  .|+ ...+..+...+...|..+++...+....+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence              21  344555555555666666666666666553  232 33344444444445556666666555544

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.69  E-value=2.4  Score=31.65  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      |.=++.+-++.+....+-|++......+.+|.+.+|+..|+++++.++.+-+.  +...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            44456677777777788899999999999999999999999999988754332  3445665544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.56  E-value=25  Score=35.48  Aligned_cols=51  Identities=18%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             CCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          593 NDLCQEALSLFDKMRNG-GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       593 ~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..+.+..+.+..+.... |..--...+.-+-.-|....++++|++++..+.+
T Consensus       182 ~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~  233 (711)
T COG1747         182 GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE  233 (711)
T ss_pred             cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence            34666777777766654 3233345555666778888899999999987776

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.46  E-value=23  Score=34.99  Aligned_cols=62  Identities=16%  Similarity=0.108  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +|..++..+.+.|+++.|...+.++...+...   .+.....-+..+...|+..+|+..++...+
T Consensus       148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555555555555555555555432111   222222333444555555555555554443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.07  E-value=13  Score=32.27  Aligned_cols=84  Identities=18%  Similarity=0.024  Sum_probs=34.6

Q ss_pred             HHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 047571          589 AYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGR  666 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  666 (681)
                      .+...|++++|+.-++.....-..-+  ..+--.|.......|.+|+|...++..... +..  ......-+++|...|+
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~--~~~~elrGDill~kg~  174 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWA--AIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHH--HHHHHHhhhHHHHcCc
Confidence            34445555555555554443110000  111122334444555555555555533322 111  1223333455555555


Q ss_pred             HHHHHHHHH
Q 047571          667 IEEAHRFRE  675 (681)
Q Consensus       667 ~~~A~~~~~  675 (681)
                      .++|+.-++
T Consensus       175 k~~Ar~ay~  183 (207)
T COG2976         175 KQEARAAYE  183 (207)
T ss_pred             hHHHHHHHH
Confidence            555555444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=88.99  E-value=18  Score=32.92  Aligned_cols=218  Identities=13%  Similarity=0.034  Sum_probs=108.9

Q ss_pred             CChHHHHHHHHHHHHcCcC-CCHHHHHHHHHHhhccCChhHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 047571          392 GRLEQALRSIAWMQQEGFR-PDVVTVATVIPVCSQLKALNHGKEIHAYAVKN-QFLPNVSIITSLMIMYSKCGVLDYSLK  469 (681)
Q Consensus       392 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~  469 (681)
                      +....+...+......... .....+......+...+....+...+...... ........+......+...++...+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3344444444444443221 12344555555556666666666665555442 223344445555555555666666666


Q ss_pred             HHhhCCC--CCc-chHHHHHH-HHHhcCChhHHHHHHHHhHhCCC--CCCHHHHHHHHHHhccccchHHHHHHHHHHHHc
Q 047571          470 LFDEMEV--RNV-ISWTAMID-SCIENGRLDDALGVFRSMQLSKH--RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK  543 (681)
Q Consensus       470 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  543 (681)
                      .+.....  ++. ........ .+...|+++.|...+.+......  ......+......+...++.+.+...+....+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            6665554  211 12222222 45666666666666666644111  012222333333344556666666666666554


Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          544 DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       544 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      ........+..+...+...++++.+...+.....  ++ ...+..+...+...+..+++...+++....
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3221345555566666666666666666665555  22 223333333333455566666666666553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.73  E-value=0.69  Score=27.04  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=9.9

Q ss_pred             CHHHHHHHHHHHhccCCHHHH
Q 047571          614 NHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       614 ~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      |...|..+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            444444444444444444444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.71  E-value=3  Score=31.55  Aligned_cols=62  Identities=15%  Similarity=0.130  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      =+..+-++.+....+-|++......+.+|.+.+++..|+++|+.++.+-+.  ....|..+++-
T Consensus        27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE   88 (108)
T PF02284_consen   27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE   88 (108)
T ss_dssp             HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence            356666777777788899999999999999999999999999988875443  33467666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.57  E-value=18  Score=32.61  Aligned_cols=197  Identities=15%  Similarity=0.102  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--cchHHHHHHHHHhc
Q 047571          415 TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRN--VISWTAMIDSCIEN  492 (681)
Q Consensus       415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~  492 (681)
                      .|.-.-.+|...+++++|...+.+..+.- ..+...       +.....++.|.-+.+++.+-+  +..|+-....|...
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrsl-------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSL-------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            34445556777777888777666655311 111111       111233455555555555422  22455566677777


Q ss_pred             CChhHHHHHHHHhHh--CCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc---C--CCCChhHHHHHHHHHHhcCCH
Q 047571          493 GRLDDALGVFRSMQL--SKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK---D--FASVPFVAAENIKMYGMCGFL  565 (681)
Q Consensus       493 ~~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~  565 (681)
                      |.++-|-..+++.-+  .++.|+                  .|.+++.+...-   +  ...-...+....+.+.+..++
T Consensus       105 GspdtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             CCcchHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence            777766665555432  123443                  444444432211   0  011122333444555666666


Q ss_pred             HHHHHHhhhCCC--------CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHhccCCHHH
Q 047571          566 ECAKLVFDAVPV--------KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGG--FTP-NHFTFKVLLSICNQAGFADE  633 (681)
Q Consensus       566 ~~a~~~~~~~~~--------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p-~~~~~~~l~~~~~~~g~~~~  633 (681)
                      ++|-..+.+-..        ++ ...|-..|-.+....++..|.+.++.-.+-+  ..+ +..+...|+.+| ..||.++
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~  245 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE  245 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence            665554443222        11 1123334444445556666666666543321  111 345555555554 3455555


Q ss_pred             HHHHH
Q 047571          634 ACRIF  638 (681)
Q Consensus       634 A~~~~  638 (681)
                      +..++
T Consensus       246 ~~kvl  250 (308)
T KOG1585|consen  246 IKKVL  250 (308)
T ss_pred             HHHHH
Confidence            55544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.51  E-value=40  Score=36.44  Aligned_cols=163  Identities=7%  Similarity=-0.055  Sum_probs=82.2

Q ss_pred             hHHHHHHHHH-hcCChhHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHhC----CCCchh
Q 047571           74 AIYKDIQRFA-RQNKLKEALVILDYMDQQGIPVNV-----TTFNALITACVRTRSLVEGRLIHTHIRING----LENNGF  143 (681)
Q Consensus        74 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~  143 (681)
                      +.-.+...+. ...+++.|...+++....--+++.     ..-..+++.+.+.+... |....++.++.-    ..+-..
T Consensus        61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~  139 (608)
T PF10345_consen   61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY  139 (608)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence            4445555555 577788888888766433212211     12233445555554444 777777765542    122333


Q ss_pred             HHHHH-HHHhhcCCChhHHHHhhhhcCC-----CC--CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCC---------
Q 047571          144 LRTKL-VKMYTSCGSFEDAEKVFDESSS-----ES--VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGV---------  206 (681)
Q Consensus       144 ~~~~l-~~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~---------  206 (681)
                      .+..+ +..+...++...|.+.++.+..     .+  +..+-.++.+......+..+++++.+.++.....         
T Consensus       140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~  219 (608)
T PF10345_consen  140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH  219 (608)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence            33333 3333333677777777766531     11  2224444445444443356666666666533221         


Q ss_pred             CCChhhHHHHHHHhh--ccCchhhhHHHHHHHH
Q 047571          207 QLNVYTFSCVIKSFA--GASALMQGLKTHALLI  237 (681)
Q Consensus       207 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~  237 (681)
                      .|-..+|..+++.++  ..|+++.+.+.++++.
T Consensus       220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            223445666665544  4566556655554443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.12  E-value=41  Score=36.05  Aligned_cols=46  Identities=11%  Similarity=0.095  Sum_probs=28.3

Q ss_pred             HhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChH
Q 047571          350 RSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLE  395 (681)
Q Consensus       350 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~  395 (681)
                      ...+|+.+...|++++|-...-.|...+...|.-.+..+...++..
T Consensus       395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~  440 (846)
T KOG2066|consen  395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT  440 (846)
T ss_pred             HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence            3456666666677777766666666666666665555555555443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.96  E-value=0.95  Score=24.44  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=14.9

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHH
Q 047571          654 YLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       654 ~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      ...+..++...|+.++|.++++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            4456667777777777777665

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.46  E-value=23  Score=32.40  Aligned_cols=49  Identities=2%  Similarity=-0.010  Sum_probs=25.8

Q ss_pred             CChhHHHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 047571          427 KALNHGKEIHAYAVKNQFL---PNVSIITSLMIMYSKCGVLDYSLKLFDEME  475 (681)
Q Consensus       427 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  475 (681)
                      .++++|..-|++..+..-.   -.......++..+.+.|++++....+.++.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL   92 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL   92 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3566666666666553211   122233445556666666666665555543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.41  E-value=7.3  Score=33.86  Aligned_cols=95  Identities=12%  Similarity=-0.077  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHhhhCCCCC------hhhHHHHHHHHHcCCChHHHHHHHHHHHhC---CCCCCHHHHHH
Q 047571          550 FVAAENIKMYGMCGFLECAKLVFDAVPVKG------SITWTAIIEAYGYNDLCQEALSLFDKMRNG---GFTPNHFTFKV  620 (681)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~  620 (681)
                      ..+..+...|.+.|+.+.|.+.+.++....      ...+-.+|+.....+++..+...+.+....   |-.++...-..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            345566777777788888877777766622      345667788888888888888887776543   22222222112


Q ss_pred             HHH--HHhccCCHHHHHHHHHHhhhc
Q 047571          621 LLS--ICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       621 l~~--~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...  .+...|++..|-+.|-.....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcC
Confidence            222  245568999999988766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.03  E-value=26  Score=32.71  Aligned_cols=112  Identities=7%  Similarity=0.043  Sum_probs=72.5

Q ss_pred             HHHHHHHhhhCC-----CCChhhHHHHHHHHHc-CC-ChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571          565 LECAKLVFDAVP-----VKGSITWTAIIEAYGY-ND-LCQEALSLFDKMRNG-GFTPNHFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       565 ~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                      +.+|..+|+...     -.|......+++.... .+ ....-.++.+-+... |-.++..+....+..+++.++|+.-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            345555555211     1344445555555544 11 222233344444432 346777888888999999999999999


Q ss_pred             HHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          637 IFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      +|+......+..-|...|..+|+...+.|+..-...++++
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            9987766445556778899999999999998888777653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.02  E-value=16  Score=30.20  Aligned_cols=67  Identities=12%  Similarity=0.195  Sum_probs=41.9

Q ss_pred             hcCChhHHHHHHHHHHHhCC-CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCC-CccHHHHHHHHHHcC
Q 047571          119 RTRSLVEGRLIHTHIRINGL-ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSES-VYPWNALLRGAVIAG  187 (681)
Q Consensus       119 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ll~~~~~~~  187 (681)
                      ..++.+++..+++.|.-..+ .+...++..  ..+...|+|++|.++|+++.+.. ..+|..-+.++|...
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            36677777777777765542 222233333  34566788888888888887654 346666666666554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=86.69  E-value=29  Score=32.92  Aligned_cols=17  Identities=12%  Similarity=0.059  Sum_probs=11.8

Q ss_pred             HHHcCCChHHHHHHHHH
Q 047571          589 AYGYNDLCQEALSLFDK  605 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~  605 (681)
                      .+.+.+++++|.++|+-
T Consensus       255 ~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHhhcCHHHHHHHHHH
Confidence            34457788888887764

It is also involved in sporulation [].

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.59  E-value=54  Score=35.85  Aligned_cols=86  Identities=14%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             hhccCChhHHHHHHHHHHHhCCCCChh-------HHHHHHH-HHHhcCChHHHHHHHhhCCC--------CCcchHHHHH
Q 047571          423 CSQLKALNHGKEIHAYAVKNQFLPNVS-------IITSLMI-MYSKCGVLDYSLKLFDEMEV--------RNVISWTAMI  486 (681)
Q Consensus       423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li  486 (681)
                      .....++.+|..++.++...-..|+..       .++.+-. .....|+++.|.++.+....        ...+.+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            345677888888887776543233221       2222221 12346777887777665442        3556777777


Q ss_pred             HHHHhcCChhHHHHHHHHhHhC
Q 047571          487 DSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       487 ~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      .+..-.|++++|..+..+..+.
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHH
Confidence            7788888888888877766554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.52  E-value=9.8  Score=31.38  Aligned_cols=50  Identities=12%  Similarity=-0.088  Sum_probs=30.2

Q ss_pred             hcCCHHHHHHHhhhCCC--CChhhHH-HHHHHHHcCCChHHHHHHHHHHHhCC
Q 047571          561 MCGFLECAKLVFDAVPV--KGSITWT-AIIEAYGYNDLCQEALSLFDKMRNGG  610 (681)
Q Consensus       561 ~~g~~~~a~~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g  610 (681)
                      ..++.++++.+++.+..  |+..-.. .-...+...|++++|+.+|++..+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            35777777777775544  4422221 12334566777888888877777653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.49  E-value=1.5  Score=25.39  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +|..+...|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344455555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.43  E-value=0.91  Score=26.52  Aligned_cols=31  Identities=23%  Similarity=0.271  Sum_probs=18.8

Q ss_pred             HHHHHhCCCCchhHHHHHHHHhhcCCChhHHH
Q 047571          131 THIRINGLENNGFLRTKLVKMYTSCGSFEDAE  162 (681)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  162 (681)
                      ++.++.. +.+...|+.+...|...|++++|+
T Consensus         3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            3344444 556666677777777777766664

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=85.78  E-value=53  Score=35.01  Aligned_cols=119  Identities=13%  Similarity=0.008  Sum_probs=73.9

Q ss_pred             HHHhcCCHHHHHHHhhhCCC-CChhh-H---HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 047571          558 MYGMCGFLECAKLVFDAVPV-KGSIT-W---TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFAD  632 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~-~~~~~-~---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~  632 (681)
                      ++.-.|+.++|..+.+++.. .|+.. |   -.+.-+|+-.|+.....+++.-.+.. ...|..-.....-++.-..+++
T Consensus       510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~  588 (929)
T KOG2062|consen  510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE  588 (929)
T ss_pred             HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence            34445677778888877776 34321 1   23455677777766666666554442 3445555556666677777888


Q ss_pred             HHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          633 EACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       633 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ....+.+.+.+.++....-..-.+|+-+|+-.| ..+|+.+++-|-
T Consensus       589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~  633 (929)
T KOG2062|consen  589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLT  633 (929)
T ss_pred             hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhh
Confidence            888888877776555555555556666666666 467777777664

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.05  E-value=8.3  Score=28.93  Aligned_cols=63  Identities=13%  Similarity=0.039  Sum_probs=46.1

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571           87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK  150 (681)
Q Consensus        87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  150 (681)
                      +.-++.+-++.+...+.-|++....+.+++|.+.+++..|.++++-.+... ..+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            445566677777777888899999999999999999999999998776332 224445665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=84.94  E-value=34  Score=32.04  Aligned_cols=75  Identities=13%  Similarity=-0.043  Sum_probs=39.4

Q ss_pred             HHhHhCCCCCCHHHHHHHHHHhccccchH-HHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571          503 RSMQLSKHRPDSVAMARMLSVSGQLKALK-LGKEIHGQVLKK-----DFASVPFVAAENIKMYGMCGFLECAKLVFDAVP  576 (681)
Q Consensus       503 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  576 (681)
                      +-..+.+.+++......++..+...+.-+ .-..+.+.++++     ....++.....+...|.+.|++.+|+.-|-...
T Consensus        38 ev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~  117 (260)
T PF04190_consen   38 EVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT  117 (260)
T ss_dssp             HHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence            33344566666665555555554443221 233344444432     223468888999999999999999888775444


Q ss_pred             C
Q 047571          577 V  577 (681)
Q Consensus       577 ~  577 (681)
                      .
T Consensus       118 ~  118 (260)
T PF04190_consen  118 D  118 (260)
T ss_dssp             H
T ss_pred             C
Confidence            3

; PDB: 3LKU_E 2WPV_G.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.91  E-value=0.77  Score=38.40  Aligned_cols=84  Identities=17%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHH
Q 047571          419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDA  498 (681)
Q Consensus       419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  498 (681)
                      ++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++....   .-...++..|.+.|.+++|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            4566677777777777777777766566677778888888888777777777763332   3334455666666666666


Q ss_pred             HHHHHHh
Q 047571          499 LGVFRSM  505 (681)
Q Consensus       499 ~~~~~~m  505 (681)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            6666554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=84.85  E-value=7.9  Score=29.38  Aligned_cols=60  Identities=15%  Similarity=0.096  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571           90 EALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK  150 (681)
Q Consensus        90 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  150 (681)
                      +..+-++.+...++-|++....+.+++|.+.+++..|.++++-.+..- .+....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence            466667777777788899999999999999999999999998887553 233336666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.36  E-value=10  Score=35.53  Aligned_cols=102  Identities=14%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             hCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCC-CCC-----ccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCC
Q 047571          136 NGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSS-ESV-----YPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLN  209 (681)
Q Consensus       136 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~  209 (681)
                      .|.+....+...++..-....++++++..+-++.. ++.     .+-.+.++-+.+.   ++..++.++..=.+-|+-||
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky---~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY---DPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc---ChHHHHHHHhCcchhccccc
Confidence            34455555566666666666777777777765542 211     1122233333322   67778888777778888888


Q ss_pred             hhhHHHHHHHhhccCchhhhHHHHHHHHHhC
Q 047571          210 VYTFSCVIKSFAGASALMQGLKTHALLIKNG  240 (681)
Q Consensus       210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g  240 (681)
                      ..+++.+|..+.+.+++.+|.++.-.|....
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            8888888888888888888887776665543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.24  E-value=21  Score=36.74  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=67.3

Q ss_pred             HHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHH
Q 047571          355 DMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKE  434 (681)
Q Consensus       355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  434 (681)
                      ....+.|+++.|.++..+..  +..-|..|.++....+++..|.+.|....+         |..|+-.+...|+.+....
T Consensus       645 elal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  645 ELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            34456678888877765433  556788888888888888888888776554         4455666666676665555


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 047571          435 IHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM  474 (681)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  474 (681)
                      +-....+.|.      .|.-.-+|...|+++++.+++.+-
T Consensus       714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            5555555552      233344566677777777776554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.65  E-value=2.4  Score=24.38  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=11.0

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          584 TAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       584 ~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      ..+...+...|++++|++.|++..+
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3344444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.60  E-value=2.6  Score=30.11  Aligned_cols=46  Identities=15%  Similarity=0.033  Sum_probs=21.6

Q ss_pred             cCCChHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhccCCHHHHHHH
Q 047571          592 YNDLCQEALSLFDKMRNGGFTP-N-HFTFKVLLSICNQAGFADEACRI  637 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~  637 (681)
                      ..++.++|+..|++..+.-..| + -.++..|+.+++..|++++++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555432222 1 13344455555555555555543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.59  E-value=7.1  Score=36.42  Aligned_cols=101  Identities=12%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             CCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC-C-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571          342 RYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER-N-----EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT  415 (681)
Q Consensus       342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  415 (681)
                      |.+....+...++.......+++.+...+-.+... +     ..+-.++++.+ -.-+.++++.++..=+..|+-||.++
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence            44444555555565556567777777776665542 1     11122233333 33467789999888889999999999


Q ss_pred             HHHHHHHhhccCChhHHHHHHHHHHHhC
Q 047571          416 VATVIPVCSQLKALNHGKEIHAYAVKNQ  443 (681)
Q Consensus       416 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~  443 (681)
                      ++.+|+.+.+.+++..|..+.-.|....
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999988887776544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=83.36  E-value=2.4  Score=24.41  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          652 EHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       652 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ..+..+..++.+.|++++|++.+++..
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456777888888888888888887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.80  E-value=8.7  Score=33.87  Aligned_cols=69  Identities=10%  Similarity=-0.102  Sum_probs=36.0

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNG--GFTPNHFTFKVLLS  623 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~  623 (681)
                      .+..+.+.+.+.+|....+.-.+   -|...-..+++.+|-.|++++|..=++-.-..  ...+-..+|..++.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34455555666666666543222   23444555666777777777776555544331  11223445555554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=82.60  E-value=34  Score=30.32  Aligned_cols=159  Identities=11%  Similarity=-0.013  Sum_probs=83.0

Q ss_pred             CCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCcc-HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 047571          139 ENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYP-WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI  217 (681)
Q Consensus       139 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  217 (681)
                      +.-+.+||.|.--+...|+++.|.+.|+...+-|+.- |..+=++..-.-.+++.-|.+-|.+.-+..  |+. .|.++ 
T Consensus        96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D--~~D-PfR~L-  171 (297)
T COG4785          96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD--PND-PFRSL-  171 (297)
T ss_pred             CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC--CCC-hHHHH-
Confidence            3345678888878888888888888888877655543 555544433322237777777766665542  211 12211 


Q ss_pred             HHhh--ccCchhhhHHHHH-HHHHhCCCCCcHHHhH-HHHHHHhcCChHHHHHHHhccCCCC-------hhhHHHHHHHH
Q 047571          218 KSFA--GASALMQGLKTHA-LLIKNGFVDYLILRTS-LIDMYFKCGKIKLARRVFDETGDRD-------IVVWGSMIAGF  286 (681)
Q Consensus       218 ~~~~--~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~  286 (681)
                      -.|.  ..-++.+|..-+. ...    ..|..-|.. ++..|...=..+.+.+-.......+       ..+|--+.+-+
T Consensus       172 WLYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~  247 (297)
T COG4785         172 WLYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYY  247 (297)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            1121  2223444443222 221    122222222 2233322222233322222222211       24677778888


Q ss_pred             HhcCChHHHHHHHHHHHHc
Q 047571          287 AHNRLRWEALDCARWMIRE  305 (681)
Q Consensus       287 ~~~~~~~~a~~~~~~m~~~  305 (681)
                      ...|+.++|..+|+-....
T Consensus       248 l~~G~~~~A~~LfKLaian  266 (297)
T COG4785         248 LSLGDLDEATALFKLAVAN  266 (297)
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            8889999999988877654

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.49  E-value=18  Score=27.37  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHH
Q 047571          122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKM  201 (681)
Q Consensus       122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m  201 (681)
                      ..++|.-+-+++...+ .....+--+-+..+.+.|++++|..+.+.+..||..+|-++-.+  +.|  -.+....-+..|
T Consensus        20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlG--l~s~l~~rl~rl   94 (115)
T TIGR02508        20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLG--LGSALESRLNRL   94 (115)
T ss_pred             HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhc--cHHHHHHHHHHH
Confidence            3567777777776554 22344444556677888999999999999888888888777544  333  334444444455


Q ss_pred             HHcC
Q 047571          202 RELG  205 (681)
Q Consensus       202 ~~~g  205 (681)
                      ...|
T Consensus        95 a~sg   98 (115)
T TIGR02508        95 AASG   98 (115)
T ss_pred             HhCC
Confidence            5554

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.43  E-value=20  Score=31.47  Aligned_cols=79  Identities=13%  Similarity=-0.040  Sum_probs=55.8

Q ss_pred             HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC--CCCCChhHHHHHHHHHhhcCCHH
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY--KIEALEEHYLIMIDILTRFGRIE  668 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~  668 (681)
                      .+.|+ +.|.+.|-++...+.--++.....|..-|. ..+.+++++++....+-.  +-.+|++.+.+|+.++.+.|+.+
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34454 678888888887764445555555554444 667888888888775532  23567888999999999999988


Q ss_pred             HHH
Q 047571          669 EAH  671 (681)
Q Consensus       669 ~A~  671 (681)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=82.10  E-value=2.8  Score=25.54  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=15.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMR  607 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~  607 (681)
                      +++.|...|...|++++|+.++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            45556666666666666666666554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.96  E-value=12  Score=33.40  Aligned_cols=19  Identities=21%  Similarity=0.258  Sum_probs=12.2

Q ss_pred             hccCCHHHHHHHHHHhhhc
Q 047571          626 NQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~  644 (681)
                      +..+++.+|+.+|+++...
T Consensus       165 a~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4556677777777766553

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.74  E-value=3.4  Score=25.20  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          615 HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..+++.|...|...|++++|.+++++..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35677888888888888888888887754

>PRK11619 lytic murein transglycosylase; Provisional

Probab=81.60  E-value=84  Score=34.09  Aligned_cols=115  Identities=8%  Similarity=0.034  Sum_probs=51.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 047571           79 IQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSF  158 (681)
Q Consensus        79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  158 (681)
                      .....+.|++..+..+...+..... ..-..|..+...+. ....++...+++.-.  +.+.....-..-+..+.+.+++
T Consensus        40 A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w  115 (644)
T PRK11619         40 IKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDW  115 (644)
T ss_pred             HHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCH
Confidence            4445566777777666666542211 11112222222111 123333333333211  1122233334445556667777


Q ss_pred             hHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHH
Q 047571          159 EDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMK  200 (681)
Q Consensus       159 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~  200 (681)
                      +...+.... +..+...-.....+....|  +.++|......
T Consensus       116 ~~~~~~~~~-~p~~~~~~c~~~~A~~~~G--~~~~A~~~a~~  154 (644)
T PRK11619        116 RGLLAFSPE-KPKPVEARCNYYYAKWATG--QQQEAWQGAKE  154 (644)
T ss_pred             HHHHHhcCC-CCCCHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence            777763322 2223333445555666666  54445444443

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=81.24  E-value=61  Score=32.25  Aligned_cols=346  Identities=12%  Similarity=0.061  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 047571           75 IYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTS  154 (681)
Q Consensus        75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  154 (681)
                      .+..+..|...|+..+|-+..+++..     +......+-+++...+.-..+..+.-.+.+.+...+...-+.+..++.+
T Consensus       217 In~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr  291 (645)
T KOG0403|consen  217 INGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR  291 (645)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh


Q ss_pred             CC--------ChhHHHHhhhhcCCCCCcc----HHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 047571          155 CG--------SFEDAEKVFDESSSESVYP----WNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG  222 (681)
Q Consensus       155 ~g--------~~~~a~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  222 (681)
                      .+        +...|...|+.+....+.-    -+.+-..-...|  +.+. +..|++           +...+|+-|..
T Consensus       292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g--~~e~-~r~Fkk-----------~~~~IIqEYFl  357 (645)
T KOG0403|consen  292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPG--DSEN-LRAFKK-----------DLTPIIQEYFL  357 (645)
T ss_pred             hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCC--cchH-HHHHHH-----------hhHHHHHHHHh


Q ss_pred             cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-----------------------ChhhH
Q 047571          223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-----------------------DIVVW  279 (681)
Q Consensus       223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~  279 (681)
                      .|+..+..+.++.+-.-...|-...+..-+..=.++..-+.|-.++..+.-.                       |...-
T Consensus       358 sgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a  437 (645)
T KOG0403|consen  358 SGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRA  437 (645)
T ss_pred             cCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhcccccc


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCch----HHhHHHH
Q 047571          280 GSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELF----VRSSLVD  355 (681)
Q Consensus       280 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~  355 (681)
                      ...+..|....-.++.+.-+.-=.-.|..|-..+-...++.....=....+=+-+....-.+|-...+.    -...|+.
T Consensus       438 ~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLe  517 (645)
T KOG0403|consen  438 SQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLE  517 (645)
T ss_pred             HHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHH


Q ss_pred             HHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccC-----
Q 047571          356 MYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK-----  427 (681)
Q Consensus       356 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----  427 (681)
                      -|.-.|++.+|.+.++++.-|   ..+.+.+++.+.-+.|+-...+.+++..-..    ...|-+.|-.+|.+..     
T Consensus       518 EY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV~dsl~D  593 (645)
T KOG0403|consen  518 EYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERVYDSLPD  593 (645)
T ss_pred             HHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhhhccCcc


Q ss_pred             ---ChhHHHHHHHHHHHhC
Q 047571          428 ---ALNHGKEIHAYAVKNQ  443 (681)
Q Consensus       428 ---~~~~a~~~~~~~~~~~  443 (681)
                         ++..|.+.|+...+.+
T Consensus       594 lsLDvPna~ekf~~~Ve~~  612 (645)
T KOG0403|consen  594 LSLDVPNAYEKFERYVEEC  612 (645)
T ss_pred             cccCCCcHHHHHHHHHHHH

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.88  E-value=4.3  Score=23.40  Aligned_cols=28  Identities=18%  Similarity=0.042  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+|..+..++...|++++|++.|++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            3566677777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.80  E-value=38  Score=29.59  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=22.0

Q ss_pred             HHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .....|.+|+|+.+++...+.++.  ......-.+++...|+-++|+.-|+...+
T Consensus       135 vq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~  187 (207)
T COG2976         135 VQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALE  187 (207)
T ss_pred             HHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence            334444445554444444332211  11122223344455555555555554444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.54  E-value=89  Score=33.70  Aligned_cols=49  Identities=16%  Similarity=0.139  Sum_probs=29.0

Q ss_pred             HHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHH
Q 047571          246 ILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWE  294 (681)
Q Consensus       246 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  294 (681)
                      .+....|+.+.-.|++++|-...-.|...+..-|.-.+..+...+....
T Consensus       393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~  441 (846)
T KOG2066|consen  393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD  441 (846)
T ss_pred             HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence            3445556666666666666666666666666556555555555554443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=80.30  E-value=63  Score=31.87  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571          512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFAS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV  577 (681)
Q Consensus       512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  577 (681)
                      ....++..+...+.+.|.++.|...+..+.+.+...   .+.+...-++.....|+.++|...++....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344567788888888999999988888887654222   456666667778888888888887765443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	681
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 3e-11
 Identities = 75/487 (15%), Positives = 146/487 (29%), Gaps = 134/487 (27%)

Query: 3   STQALAVSLSLCVHSFPPNPISNNHQFFKLK-ASATKPESTYFQKRKKYH--TKKSAEKD 59
           +  AL V LS  V       I      F L   +   PE+     +K  +        + 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 60  AFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPV-NVTTFNALITAC- 117
              S++ L      +I  +++R  +    +  L++L   +     V N   +NA   +C 
Sbjct: 218 DHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVLL--N-----VQNAKAWNAFNLSCK 267

Query: 118 --VRTR--SLVE--GRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSE 171
             + TR   + +       THI ++   +      ++  +          +    +   E
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLKY-----LDCRPQDLPRE 321

Query: 172 --SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQG 229
             +  P     R ++IA   R     ++  K       +N    + +I+S          
Sbjct: 322 VLTTNP----RRLSIIAESIRDGLATWDNWK------HVNCDKLTTIIES---------- 361

Query: 230 LKTHALLIKNGFVDYL---ILRTSLIDMYFKCGKIKLARRVFDETGDRDI------VVWG 280
                       ++ L     R     M+ +         VF       I      ++W 
Sbjct: 362 -----------SLNVLEPAEYR----KMFDRLS-------VFPP--SAHIPTILLSLIWF 397

Query: 281 SM-------IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEV 333
            +       +    H      +L   +      I   S+ L + + +  E         +
Sbjct: 398 DVIKSDVMVVVNKLHKY----SL-VEKQPKESTISIPSIYLELKVKLENE-------YAL 445

Query: 334 HAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFY--ETEERNEILWTALMSGYVSN 391
           H  ++  + Y   +       D+     D      + +  +  E  E   T     ++  
Sbjct: 446 HRSIV--DHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDF 500

Query: 392 GRLEQALR--SIAWMQQEGFRPDVVTVATVIPVCSQLK------ALNHGK-EIHAYAVKN 442
             LEQ +R  S AW              +++    QLK        N  K E    A+ +
Sbjct: 501 RFLEQKIRHDSTAWN----------ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 443 QFLPNVS 449
            FLP + 
Sbjct: 551 -FLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 93/633 (14%), Positives = 181/633 (28%), Gaps = 189/633 (29%)

Query: 76  YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEG--RLIHTHI 133
           YKDI        +       D  D Q +P ++ +    I   + ++  V G  RL  T  
Sbjct: 18  YKDILSVFEDAFVDN----FDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWT-- 70

Query: 134 RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRG 193
               L +                  E+  + F E      Y +   L   +   K   R 
Sbjct: 71  ----LLSKQ----------------EEMVQKFVEEVLRINYKF---LMSPI---KTEQRQ 104

Query: 194 -----VLFNYMKMR-----ELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVD 243
                 ++   + R     ++  + NV      +K      AL++ L+    ++ +G   
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLE-LRPAKNVLIDG--- 157

Query: 244 YLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAG-FAHNRLRWEALDCARWM 302
                     +    GK  +A  V          V   M    F              W+
Sbjct: 158 ----------V-LGSGKTWVALDVC-----LSYKVQCKMDFKIF--------------WL 187

Query: 303 -IREGIYPNSVV--LTILLPVIGEAWARKLGQEVHAYVLKNERYSE--ELFVRSSLVDMY 357
            ++    P +V+  L  LL  I   W  +     +  +  +   +E   L         Y
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PY 243

Query: 358 CKC----RDMNSAW---------RVFYETEERNEILWTALMSGYVSNGRLEQA------- 397
             C     ++ +A          ++   T  R + +   L +   ++  L+         
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 398 -----LRSIAWMQQEGFRPDVVTVATVIP-VCSQLKALNHGKEIHAYAVKNQFLPNVSII 451
                L      + +    +V+T     P   S +      + I           +V+  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTN---PRRLSII-----AESIRDGLATWDNWKHVNCD 353

Query: 452 TSLMIMYSKCGVLDYSL--KLFDEMEV--RNV--------ISWTAMIDSCIENGRLDDAL 499
               I+ S   VL+ +   K+FD + V   +         + W  +I S +    + + L
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM--VVVNKL 411

Query: 500 GVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----------DFASVP 549
               S+ + K   +S      + +  ++K       +H  ++            D     
Sbjct: 412 -HKYSL-VEKQPKESTISIPSIYLELKVKLENE-YALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 550 ------------FVAAENIKMYGMC-------GFLECAKLVFDAVPVKGSITWTAIIEAY 590
                           E+ +   +         FLE  K+  D+        W A     
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTA------WNA--SGS 519

Query: 591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLS 623
             N L Q  L  +          N   ++ L++
Sbjct: 520 ILNTLQQ--LKFYKPY----ICDNDPKYERLVN 546

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.1 bits (123), Expect = 5e-07
 Identities = 9/76 (11%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 352 SLVDMYCKCRDMNSAWRVFYETEERNE-------ILWTALMSGYVSNGRLEQALRSIAWM 404
           +          +  A  +      + +        ++ A+M G+   G  ++ +  +  +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 405 QQEGFRPDVVTVATVI 420
           +  G  PD+++ A  +
Sbjct: 192 KDAGLTPDLLSYAAAL 207

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.2 bits (105), Expect = 7e-05
 Identities = 25/214 (11%), Positives = 64/214 (29%), Gaps = 29/214 (13%)

Query: 319 PVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNE 378
           PV    WA+ L ++     ++ +R   +L +              +  ++      +   
Sbjct: 20  PVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQ-----------SGEFKALTRRLQVEP 68

Query: 379 ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY 438
            L +  M+G +               +Q    P    +A ++       +L+  +     
Sbjct: 69  RLLSKQMAGCLE-----------DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQ 117

Query: 439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM-------EVRNVISWTAMIDSCIE 491
             + Q       + +          L  +  L           ++  +  + A++     
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 492 NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG 525
            G   + + V   ++ +   PD ++ A  L   G
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 23/248 (9%), Positives = 64/248 (25%), Gaps = 41/248 (16%)

Query: 30  FKLKASATKPESTYFQKRKKYHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLK 89
              ++   K  +   Q   +  +K+ A      +           + + +Q    +  L 
Sbjct: 50  MPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLD 109

Query: 90  EALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT--- 146
                     Q  +        A    C+ T  L      H  +  +G      L T   
Sbjct: 110 VEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL--PLAHHLLVVHHGQRQKRKLLTLDM 167

Query: 147 --KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMREL 204
              ++  +   G+F++   V                                    +++ 
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFM---------------------------------VKDA 194

Query: 205 GVQLNVYTFSCVIKSFAGASALMQGLKT-HALLIKNGFVDYLILRTSLIDMYFKCGKIKL 263
           G+  ++ +++  ++           ++     + + G     +    L+    +   +K 
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254

Query: 264 ARRVFDET 271
             +V    
Sbjct: 255 VHKVKPTF 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	681
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.9
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.74
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.72
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.69
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.68
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.67
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.65
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.64
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.53
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.48
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.45
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.45
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.44
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.42
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.41
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.38
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.28
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.27
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.27
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.24
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.24
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.23
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.23
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.23
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.21
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.18
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.18
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.06
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.03
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.0
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.97
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.96
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.81
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.76
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.76
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.73
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.72
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.7
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.64
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.64
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.57
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.56
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.48
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.47
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.45
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.45
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.41
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.37
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.37
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.35
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.35
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.33
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.33
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.31
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.25
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.25
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.22
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.19
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.19
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.18
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.17
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.17
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.15
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.07
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.06
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.0
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.0
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.96
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.95
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.93
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.92
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.92
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.87
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.87
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.87
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.86
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.84
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.84
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.67
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.66
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.64
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.62
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.59
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.46
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.44
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.42
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.38
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.27
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.81
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.68
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.56
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.52
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.26
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.08
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.96
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.73
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.62
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.52
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.4
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.22
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.12
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.25
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.22
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.05
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.87
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.53
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.88
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.22
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.17
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.69
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.61
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.28
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.09
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.75
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.79
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	87.76
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.44
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.39
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	86.9
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.92
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	84.68
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	84.22
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.07
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.97
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.8
2p58_C	116	Putative type III secretion protein YSCG; type III	82.71
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.39
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.26
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	80.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	80.81
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	80.78
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	80.51
2p58_C	116	Putative type III secretion protein YSCG; type III	80.28

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-38  Score=342.73  Aligned_cols=490  Identities=10%  Similarity=-0.030  Sum_probs=389.7

Q ss_pred             CChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHH
Q 047571          156 GSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHAL  235 (681)
Q Consensus       156 g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  235 (681)
                      |....+...++.++.++...|+.++..+.+.|  ++++|+.+|++|..  ..|+..++..++.+|.+.|++++|..+++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  142 (597)
T 2xpi_A           67 GSFLKERNAQNTDSLSREDYLRLWRHDALMQQ--QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTK  142 (597)
T ss_dssp             ---------------CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccCCCCCccccchHHHHHHHHHHHHHHHHcc--CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            33444444555555555555666666666666  66667777777764  467888888899999999999999999987


Q ss_pred             HHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCC-------------------ChhhHHHHHHHHHhcCChHHHH
Q 047571          236 LIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDR-------------------DIVVWGSMIAGFAHNRLRWEAL  296 (681)
Q Consensus       236 ~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~  296 (681)
                      +...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|++++|+
T Consensus       143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  220 (597)
T 2xpi_A          143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK  220 (597)
T ss_dssp             TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence            7543  677889999999999999999999999965443                   3789999999999999999999


Q ss_pred             HHHHHHHHcCCCCCh-hhHHHHHHHHhhhhhhcc--cchh-hhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhh
Q 047571          297 DCARWMIREGIYPNS-VVLTILLPVIGEAWARKL--GQEV-HAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYE  372 (681)
Q Consensus       297 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  372 (681)
                      ++|++|.+.+  |+. ..+..+...+...+..+.  +..+ +..+... +......+|+.++..|.+.|++++|.++|++
T Consensus       221 ~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  297 (597)
T 2xpi_A          221 ECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE-DAAFLRSLYMLKLNKTSHEDELRRAEDYLSS  297 (597)
T ss_dssp             HHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG-GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc-hHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            9999999864  443 344444443332222211  1111 3333322 3444455677778899999999999999999


Q ss_pred             cCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhH
Q 047571          373 TEE--RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSI  450 (681)
Q Consensus       373 ~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  450 (681)
                      +.+  ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  375 (597)
T 2xpi_A          298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT  375 (597)
T ss_dssp             STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred             hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence            988  689999999999999999999999999999875 3377889999999999999999999999998764 667889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL  527 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  527 (681)
                      ++.++.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..+..+|.+.
T Consensus       376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  454 (597)
T 2xpi_A          376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL  454 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence            99999999999999999999998764   457799999999999999999999999999864 45778999999999999


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--------CC--hhhHHHHHHHHHcCCChH
Q 047571          528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--------KG--SITWTAIIEAYGYNDLCQ  597 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~--~~~~~~l~~~~~~~~~~~  597 (681)
                      |++++|.++++.+.+.. +.++.++..++.+|.+.|++++|.++|+++..        |+  ..+|..++.+|.+.|+++
T Consensus       455 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          455 GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999865 34688899999999999999999999988743        44  578999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHh
Q 047571          598 EALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILT  662 (681)
Q Consensus       598 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  662 (681)
                      +|++.++++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.+.   .| +...+..+..+|.
T Consensus       534 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          534 AAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI---SPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHh
Confidence            9999999998864 558899999999999999999999999988764   44 3667777777664

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-38  Score=338.15  Aligned_cols=478  Identities=9%  Similarity=-0.037  Sum_probs=314.1

Q ss_pred             CCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 047571           70 KNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLV  149 (681)
Q Consensus        70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  149 (681)
                      ++...|+.++..+.+.|++++|+.+|++|...  .|+..++..++.+|.+.|++++|..+|+.+...  +++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  157 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA  157 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence            46678999999999999999999999999854  568889999999999999999999999988643  67889999999


Q ss_pred             HHhhcCCChhHHHHhhhhcCCCC-------------------CccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCC-
Q 047571          150 KMYTSCGSFEDAEKVFDESSSES-------------------VYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLN-  209 (681)
Q Consensus       150 ~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-  209 (681)
                      .+|.+.|++++|.++|+++...+                   ..+|+.++.++.+.|  ++++|+..|++|.+.+  |+ 
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~--p~~  233 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS--NFDRAKECYKEALMVD--AKC  233 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC--chh
Confidence            99999999999999999644332                   456888888888888  8888888888887754  33 


Q ss_pred             hhhHHHHHHHhhccCchhhhH--HH-HHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHH
Q 047571          210 VYTFSCVIKSFAGASALMQGL--KT-HALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIA  284 (681)
Q Consensus       210 ~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~  284 (681)
                      ...+..+...+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+  ++..+|+.++.
T Consensus       234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~  313 (597)
T 2xpi_A          234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD  313 (597)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred             hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence            334444444443333222211  11 44444444445556666677777788888888888888776  67778888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHH
Q 047571          285 GFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMN  364 (681)
Q Consensus       285 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  364 (681)
                      +|.+.|++++|+++|+++.+.+  |                                   .+..++..++.++.+.|+++
T Consensus       314 ~~~~~g~~~~A~~~~~~~~~~~--~-----------------------------------~~~~~~~~l~~~~~~~g~~~  356 (597)
T 2xpi_A          314 TLFVRSRFIDVLAITTKILEID--P-----------------------------------YNLDVYPLHLASLHESGEKN  356 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--T-----------------------------------TCCTTHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHcC--c-----------------------------------ccHHHHHHHHHHHHHhCCHH
Confidence            8888888888888888777643  1                                   12233344555555555555


Q ss_pred             HHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 047571          365 SAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK  441 (681)
Q Consensus       365 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  441 (681)
                      +|..+++.+..   .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+
T Consensus       357 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555554432   245556666666666666666666666665532 22344555566666666666666666665554


Q ss_pred             hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH
Q 047571          442 NQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMA  518 (681)
Q Consensus       442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  518 (681)
                      .+ +.+..++..++.+|.+.|++++|.++|+++.+   .+..+|+.++..|.+.|++++|+++|+++.+..         
T Consensus       436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------  505 (597)
T 2xpi_A          436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV---------  505 (597)
T ss_dssp             TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred             hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh---------
Confidence            43 33444555555555555555555555554432   234445555555555555555555555444330         


Q ss_pred             HHHHHhccccchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcC
Q 047571          519 RMLSVSGQLKALKLGKEIHGQVLKKDFASV--PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYN  593 (681)
Q Consensus       519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~  593 (681)
                                            .+.+..|+  ..++..++.+|.+.|++++|...++++..  | +..+|..+..+|...
T Consensus       506 ----------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  563 (597)
T 2xpi_A          506 ----------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK  563 (597)
T ss_dssp             ----------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred             ----------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence                                  00033444  45566666666666666666666665543  3 466888889999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       594 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      |++++|.+.|+++.+.. +.+...+..+..+|.
T Consensus       564 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          564 KIPGLAITHLHESLAIS-PNEIMASDLLKRALE  595 (597)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence            99999999999998853 336677777666553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.4e-29  Score=257.03  Aligned_cols=221  Identities=9%  Similarity=0.006  Sum_probs=186.4

Q ss_pred             HHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571           90 EALVILDYMDQQGIPVNVT-TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDES  168 (681)
Q Consensus        90 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  168 (681)
                      .+..+.+.+.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+..     
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-----   82 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-----   82 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-----
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-----
Confidence            4556667777777666554 5899999999999999999999999999999999999999999998877543211     


Q ss_pred             CCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHH
Q 047571          169 SSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILR  248 (681)
Q Consensus       169 ~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  248 (681)
                                       .+  ..+.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus        83 -----------------~~--~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty  143 (501)
T 4g26_A           83 -----------------NP--GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY  143 (501)
T ss_dssp             -----------------CH--HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             -----------------cc--hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence                             11  67889999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCChHHHHHHHhccCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhh
Q 047571          249 TSLIDMYFKCGKIKLARRVFDETGD----RDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEA  324 (681)
Q Consensus       249 ~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  324 (681)
                      +.+|.+|++.|++++|.++|++|.+    ||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999864    799999999999999999999999999999999999999999999999887


Q ss_pred             hhhcccchhh
Q 047571          325 WARKLGQEVH  334 (681)
Q Consensus       325 ~~~~~a~~~~  334 (681)
                      +..+.+...+
T Consensus       224 ~a~~~g~~~~  233 (501)
T 4g26_A          224 VATKTGVKKW  233 (501)
T ss_dssp             HHHTCCBSCC
T ss_pred             cchhhhhhhh
Confidence            6665554444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.9e-28  Score=249.00  Aligned_cols=216  Identities=10%  Similarity=0.089  Sum_probs=164.9

Q ss_pred             HHHHHHHHHHHHcCcCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571          395 EQALRSIAWMQQEGFRPDV-VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE  473 (681)
Q Consensus       395 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  473 (681)
                      ..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++      
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------   80 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------   80 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence            3455566777777765543 457888999999999999999999999999999999999999999887654221      


Q ss_pred             CCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH
Q 047571          474 MEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA  553 (681)
Q Consensus       474 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  553 (681)
                                      .+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.|+..   
T Consensus        81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---  141 (501)
T 4g26_A           81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR---  141 (501)
T ss_dssp             ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---
T ss_pred             ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---
Confidence                            2234567888899999999999999999999999999999999999999998888776654   


Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADE  633 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~  633 (681)
                                                  +||++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|++++
T Consensus       142 ----------------------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~  193 (501)
T 4g26_A          142 ----------------------------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK  193 (501)
T ss_dssp             ----------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ----------------------------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence                                        6777777888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 047571          634 ACRIFNVMSRGYKIEALEEHYLIMIDILTRF  664 (681)
Q Consensus       634 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  664 (681)
                      |.+++++|++. +..|+..||+.+++.+++.
T Consensus       194 A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          194 VYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence            88888888776 8888888888888877654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=8.8e-24  Score=213.19  Aligned_cols=369  Identities=13%  Similarity=0.069  Sum_probs=254.4

Q ss_pred             HHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhc
Q 047571          252 IDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARK  328 (681)
Q Consensus       252 i~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  328 (681)
                      ...+.+.|++++|.+.++.+.+  | +...+..+...+...|++++|..+++...+.                       
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-----------------------   62 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-----------------------   62 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------------------
Confidence            3444555666666655554432  2 3334444555555555555555555554442                       


Q ss_pred             ccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 047571          329 LGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQ  405 (681)
Q Consensus       329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~  405 (681)
                                    .+.+...+..+...+.+.|++++|...|+++..  | +..+|..+..++.+.|++++|...|+++.
T Consensus        63 --------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (388)
T 1w3b_A           63 --------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL  128 (388)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             --------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                          334445556666666777777777777666542  2 44567777777777777777777777776


Q ss_pred             HcCcCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ccch
Q 047571          406 QEGFRPDV-VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVIS  481 (681)
Q Consensus       406 ~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~  481 (681)
                      +.  .|+. ..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+.+.|++++|...|+++.+  | +...
T Consensus       129 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  205 (388)
T 1w3b_A          129 QY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA  205 (388)
T ss_dssp             HH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             Hh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            64  3443 344455556667777777777777777654 34556777777777777888877777777654  3 3456


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      |..+...+...|++++|+..+++..... +.+..++..+..++...|++++|...++++.+.+ +.++.++..+..+|.+
T Consensus       206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  283 (388)
T 1w3b_A          206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            7777777777888888888887776642 2345677777777788888888888888777753 2246677888888888


Q ss_pred             cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571          562 CGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF  638 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~  638 (681)
                      .|++++|...++++..   .+..+|+.+...+...|++++|++.++++.+.. +.+..++..+..++.+.|++++|.+.+
T Consensus       284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~  362 (388)
T 1w3b_A          284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888887765   346788888889999999999999999988752 446788889999999999999999999


Q ss_pred             HHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 047571          639 NVMSRGYKIEAL-EEHYLIMIDILTRFGR  666 (681)
Q Consensus       639 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  666 (681)
                      +++.+.   .|+ ...|..+..++.+.|+
T Consensus       363 ~~a~~~---~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          363 KEAIRI---SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTT---CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHhh---CCCCHHHHHhHHHHHHHccC
Confidence            988753   443 6778888877776664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=1.7e-23  Score=211.19  Aligned_cols=370  Identities=11%  Similarity=0.006  Sum_probs=234.0

Q ss_pred             HhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHHH
Q 047571          219 SFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWEA  295 (681)
Q Consensus       219 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a  295 (681)
                      .+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++....   .+..+|..+...+.+.|++++|
T Consensus         8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            3444556666666665555442 22334444555555666666666666654332   2455666666666666777777


Q ss_pred             HHHHHHHHHcCCCCCh-hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571          296 LDCARWMIREGIYPNS-VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE  374 (681)
Q Consensus       296 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  374 (681)
                      +..|+++.+.  .|+. .+|..+..++...|+++.|...+..+.+.  .+.                             
T Consensus        87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-----------------------------  133 (388)
T 1w3b_A           87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD-----------------------------  133 (388)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT-----------------------------
T ss_pred             HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------------
Confidence            7666666653  2332 23433333333333333333333333322  111                             


Q ss_pred             CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHH
Q 047571          375 ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSL  454 (681)
Q Consensus       375 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  454 (681)
                        +...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|++++|...|+++.+.+ +.+...+..+
T Consensus       134 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  209 (388)
T 1w3b_A          134 --LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL  209 (388)
T ss_dssp             --CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence              23344455555555666666666666665542 1234555566666666666666666666666654 3345556666


Q ss_pred             HHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571          455 MIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK  531 (681)
Q Consensus       455 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  531 (681)
                      ...+...|++++|...+++...  | +..++..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|+++
T Consensus       210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  288 (388)
T 1w3b_A          210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            6666777777777776665543  3 34566777777777777777777777777653 334556777777777778888


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +|...++++.+.. +.++.++..+..++.+.|++++|...++++..  |+ ..+|..+...+...|++++|++.|+++.+
T Consensus       289 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  367 (388)
T 1w3b_A          289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8888887777653 44677888888889999999999999888776  43 67899999999999999999999999998


Q ss_pred             CCCCC-CHHHHHHHHHHHhccCC
Q 047571          609 GGFTP-NHFTFKVLLSICNQAGF  630 (681)
Q Consensus       609 ~g~~p-~~~~~~~l~~~~~~~g~  630 (681)
                      .  .| +...|..+...+...|+
T Consensus       368 ~--~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          368 I--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             T--CTTCHHHHHHHHHHHHHTCC
T ss_pred             h--CCCCHHHHHhHHHHHHHccC
Confidence            4  45 67788888877766653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.8e-21  Score=200.10  Aligned_cols=424  Identities=10%  Similarity=-0.071  Sum_probs=296.9

Q ss_pred             hHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHh
Q 047571          212 TFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAH  288 (681)
Q Consensus       212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~  288 (681)
                      .+......+.+.|++++|...|+.+.+..  |+..++..+..++.+.|++++|...++++.+   .+..+|..+..++.+
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            34445556666777777777777777665  5667777777777777777777777766543   355677777777888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHH---HHHHHhcCCHHH
Q 047571          289 NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSL---VDMYCKCRDMNS  365 (681)
Q Consensus       289 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~  365 (681)
                      .|++++|...|+++...+. ++......++..+........+.+.+..+... +..++......-   ............
T Consensus        86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHH
T ss_pred             HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHHhhccCCchhHH
Confidence            8888888888877777642 33444444444444433333333333222111 000000000000   000000111111


Q ss_pred             HHHHHhhcC---------CC-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCc--------CCCHHHHHHH
Q 047571          366 AWRVFYETE---------ER-NEILWTALMSGYVS---NGRLEQALRSIAWMQQ-----EGF--------RPDVVTVATV  419 (681)
Q Consensus       366 a~~~~~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~l  419 (681)
                      +...+....         .+ +...+......+..   .|++++|+..++++.+     ...        +.+...+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence            111111111         11 23444445555554   8999999999999887     311        2234567777


Q ss_pred             HHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChh
Q 047571          420 IPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLD  496 (681)
Q Consensus       420 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~  496 (681)
                      ...+...|++++|..+++.+.+....  ...+..+...+...|++++|...++++.+   .+...|..+...+...|+++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            88899999999999999999887633  88888999999999999999999998765   35668888999999999999


Q ss_pred             HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571          497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVP  576 (681)
Q Consensus       497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  576 (681)
                      +|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..+..+...|...|++++|...++++.
T Consensus       322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999998864 3356788888999999999999999999998864 3357788999999999999999999998876


Q ss_pred             C--CC-------hhhHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          577 V--KG-------SITWTAIIEAYGY---NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       577 ~--~~-------~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      .  |+       ...|..+...+..   .|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            6  22       3388999999999   999999999999999853 447888999999999999999999999988774

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=8.1e-21  Score=199.50  Aligned_cols=426  Identities=9%  Similarity=-0.026  Sum_probs=221.4

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKM  151 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  151 (681)
                      ...+......+.+.|++++|+..|+++.+.+  |+..++..+..++...|++++|...++.+.+.+ +.+...+..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            3467788899999999999999999998875  689999999999999999999999999999887 6677899999999


Q ss_pred             hhcCCChhHHHHhhhhcCCC---CCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhh
Q 047571          152 YTSCGSFEDAEKVFDESSSE---SVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQ  228 (681)
Q Consensus       152 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  228 (681)
                      +...|++++|...|+++...   +......++..+....  ....+.+.+..+...+..|+...+..-............
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ--AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH--HHHHHTTC---------------------------CCCC
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence            99999999999999876532   2333444444333332  222333333222222222222111111110111111111


Q ss_pred             hHHHHHHHHHhCC---------CCCcHHHhHHHHHHHh---cCChHHHHHHHhccCC----------------C-ChhhH
Q 047571          229 GLKTHALLIKNGF---------VDYLILRTSLIDMYFK---CGKIKLARRVFDETGD----------------R-DIVVW  279 (681)
Q Consensus       229 a~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~  279 (681)
                      ...+...+.....         +.+...+......+..   .|++++|...|+++.+                + +..++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence            1111111111100         1112333333333333   6667777666665433                1 23456


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh
Q 047571          280 GSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK  359 (681)
Q Consensus       280 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  359 (681)
                      ..+...+...|++++|...++++.+..  |+...+..+...+...|+++.|...+..+.+.  .+.+..++..+...+..
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHH
Confidence            667777777777777777777776654  22555555666666666666666666665544  22333444445555555


Q ss_pred             cCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHH
Q 047571          360 CRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIH  436 (681)
Q Consensus       360 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  436 (681)
                      .|++++|...++...+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus       317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            5555555554444321   133344444444444445555544444444331 112333444444444444444444444


Q ss_pred             HHHHHhCCC-CC----hhHHHHHHHHHHh---cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHh
Q 047571          437 AYAVKNQFL-PN----VSIITSLMIMYSK---CGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSM  505 (681)
Q Consensus       437 ~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m  505 (681)
                      +.+.+.... ++    ...+..+...+..   .|++++|...++++.+   .+..++..+...|.+.|++++|...|++.
T Consensus       396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            444332111 01    1134444444444   4444444444444322   12233444444444444444444444444


Q ss_pred             Hh
Q 047571          506 QL  507 (681)
Q Consensus       506 ~~  507 (681)
                      .+
T Consensus       476 ~~  477 (514)
T 2gw1_A          476 AD  477 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=1.1e-19  Score=192.10  Aligned_cols=419  Identities=11%  Similarity=-0.014  Sum_probs=198.3

Q ss_pred             HHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHH
Q 047571          177 NALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYF  256 (681)
Q Consensus       177 ~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~  256 (681)
                      ..+...+.+.|  ++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.++.+.+.+ +.+..++..+..++.
T Consensus        29 ~~~g~~~~~~g--~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           29 KNRGNHFFTAK--NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHTT--CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            33444455555  6666666666666543 2345566666777777777777777777776654 334566666777777


Q ss_pred             hcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCChhhHHHHHHHHhhhhhhccc
Q 047571          257 KCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIRE------GIYPNSVVLTILLPVIGEAWARKLG  330 (681)
Q Consensus       257 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a  330 (681)
                      ..|++++|.+.|+.+ ..+....+..+..+...+....|...++.+...      ...|+.......+    ...+.+.+
T Consensus       105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  179 (537)
T 3fp2_A          105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSHLE  179 (537)
T ss_dssp             HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHHHH
T ss_pred             HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChHHH
Confidence            777777777777533 222222223344444555556666666666432      1223322222211    11111111


Q ss_pred             chhhhhhhhccCCCCCch-HHhHHHHHHHhc--------CCHHHHHHHHhhcCCCC----------hhhHHHHHHHHHhC
Q 047571          331 QEVHAYVLKNERYSEELF-VRSSLVDMYCKC--------RDMNSAWRVFYETEERN----------EILWTALMSGYVSN  391 (681)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~----------~~~~~~li~~~~~~  391 (681)
                      ...+....   ...+... ....+...+...        |++++|..+++.+.+.+          ..++..+...+...
T Consensus       180 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~  256 (537)
T 3fp2_A          180 VSSVNTSS---NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK  256 (537)
T ss_dssp             HHTSCCCC---SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhcc---ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence            11111110   1111111 112222221111        24445555554444321          11233444444455


Q ss_pred             CChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047571          392 GRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLF  471 (681)
Q Consensus       392 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  471 (681)
                      |++++|...+++..+.  .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus       257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            5555555555555443  2334444444445555555555555555544433 223444444444444555555555444


Q ss_pred             hhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhH
Q 047571          472 DEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFV  551 (681)
Q Consensus       472 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  551 (681)
                                                     +++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..
T Consensus       334 -------------------------------~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  380 (537)
T 3fp2_A          334 -------------------------------QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV  380 (537)
T ss_dssp             -------------------------------HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred             -------------------------------HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence                                           4444432 1122334444444444444444444444444432 223444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC--CC-------hhhHHHHHHHHHcC----------CChHHHHHHHHHHHhCCCC
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV--KG-------SITWTAIIEAYGYN----------DLCQEALSLFDKMRNGGFT  612 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-------~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~  612 (681)
                      +..+...|...|++++|...++++..  |+       ...+..+...+...          |++++|+..++++.+.. +
T Consensus       381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p  459 (537)
T 3fp2_A          381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P  459 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C
Confidence            45555555555555555555554433  10       11223334445555          67777777777766642 3


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      .+...+..+..++.+.|++++|.+.|+...+.
T Consensus       460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            35666666777777777777777777766553

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=7.5e-19  Score=185.57  Aligned_cols=435  Identities=11%  Similarity=-0.001  Sum_probs=287.6

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKM  151 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  151 (681)
                      ...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4567888899999999999999999998775 4578889999999999999999999999998887 5677888888888


Q ss_pred             hhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHH
Q 047571          152 YTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLK  231 (681)
Q Consensus       152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  231 (681)
                      +...|++++|.+.|+.+. .++...+..+..+..                                     .+....|..
T Consensus       103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~-------------------------------------~~~~~~a~~  144 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLE-------------------------------------RNLNKQAMK  144 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC------------CHHH-------------------------------------HHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHH-------------------------------------HHHHHHHHH
Confidence            988999999888886332 111111111222222                                     222334444


Q ss_pred             HHHHHHHhC--CCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChh---hHHHHHHHHHh--------cCChHHHHHH
Q 047571          232 THALLIKNG--FVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIV---VWGSMIAGFAH--------NRLRWEALDC  298 (681)
Q Consensus       232 ~~~~~~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~  298 (681)
                      .++.+....  ..+........+..+....+.+.+...+......+..   ....+...+..        .|++++|..+
T Consensus       145 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~  224 (537)
T 3fp2_A          145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM  224 (537)
T ss_dssp             HHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            444443220  0001111122344455666667776666665554332   23333222221        2467788888


Q ss_pred             HHHHHHcCCCCCh-hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--
Q 047571          299 ARWMIREGIYPNS-VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--  375 (681)
Q Consensus       299 ~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--  375 (681)
                      ++++.+.  .|+. ..+..+.                             .++..+...+...|++++|...|+....  
T Consensus       225 ~~~~l~~--~p~~~~~~~~~~-----------------------------~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~  273 (537)
T 3fp2_A          225 YHSLLSA--NTVDDPLRENAA-----------------------------LALCYTGIFHFLKNNLLDAQVLLQESINLH  273 (537)
T ss_dssp             HHHHHC----CCCHHHHHHHH-----------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH--CCCcchhhHHHH-----------------------------HHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            8877754  2332 1221111                             1234566778889999999999988764  


Q ss_pred             CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 047571          376 RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLM  455 (681)
Q Consensus       376 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  455 (681)
                      |+...|..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la  351 (537)
T 3fp2_A          274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA  351 (537)
T ss_dssp             CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            456788889999999999999999999998864 3357788888999999999999999999999875 44567788888


Q ss_pred             HHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH
Q 047571          456 IMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL  532 (681)
Q Consensus       456 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  532 (681)
                      ..+...|++++|...++++.+   .+...+..+...+...|++++|...|+++.+.......                  
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------------  413 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK------------------  413 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS------------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh------------------
Confidence            888888888888888887754   34557777888888888888888888887653200000                  


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhc----------CCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHH
Q 047571          533 GKEIHGQVLKKDFASVPFVAAENIKMYGMC----------GFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEA  599 (681)
Q Consensus       533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a  599 (681)
                                  .......+.....+|...          |++++|...++++..  | +...|..+...|...|++++|
T Consensus       414 ------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          414 ------------IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             ------------CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ------------hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence                        000111122223333344          555555555554443  2 345677788888888888888


Q ss_pred             HHHHHHHHhC
Q 047571          600 LSLFDKMRNG  609 (681)
Q Consensus       600 ~~~~~~m~~~  609 (681)
                      .+.|++..+.
T Consensus       482 ~~~~~~al~~  491 (537)
T 3fp2_A          482 IELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888888874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=3.2e-19  Score=183.79  Aligned_cols=367  Identities=11%  Similarity=0.019  Sum_probs=239.5

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 047571           61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN  140 (681)
Q Consensus        61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  140 (681)
                      +...+...|.++..+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...|+.+.+.+ +.
T Consensus        15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~   92 (450)
T 2y4t_A           15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MD   92 (450)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence            556667777888899999999999999999999999998764 5578899999999999999999999999999987 66


Q ss_pred             chhHHHHHHHHhhcCCChhHHHHhhhhcCCCCC------ccHHHHHH------------HHHHcCCcChhhHHHHHHHHH
Q 047571          141 NGFLRTKLVKMYTSCGSFEDAEKVFDESSSESV------YPWNALLR------------GAVIAGKKRYRGVLFNYMKMR  202 (681)
Q Consensus       141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~ll~------------~~~~~~~~~~~~a~~~~~~m~  202 (681)
                      +...+..+..+|.+.|++++|.+.|+++...++      ..+..+..            .+...|  ++++|+..|+++.
T Consensus        93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~  170 (450)
T 2y4t_A           93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG--DYTAAIAFLDKIL  170 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            788999999999999999999999998765333      33444432            255555  6666666666666


Q ss_pred             HcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--C-ChhhH
Q 047571          203 ELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--R-DIVVW  279 (681)
Q Consensus       203 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~  279 (681)
                      +.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|...|+++..  | +...+
T Consensus       171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  248 (450)
T 2y4t_A          171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF  248 (450)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHH
Confidence            542 2344556666666666666666666666665543 33455666666666666666666666655432  2 22333


Q ss_pred             HHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCc
Q 047571          280 GSM------------IAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEEL  347 (681)
Q Consensus       280 ~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  347 (681)
                      ..+            ...+.+.|++++|+..|+++.+.  .|+...+.                               .
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~-------------------------------~  295 (450)
T 2y4t_A          249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYT-------------------------------V  295 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHH-------------------------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHH-------------------------------H
Confidence            333            45555556666666666555542  22211100                               2


Q ss_pred             hHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH-HHHHHHH---
Q 047571          348 FVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV-VTVATVI---  420 (681)
Q Consensus       348 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll---  420 (681)
                      ..+..+...+.+.|++++|...++.+.+  | +..+|..+..+|...|++++|...+++..+.  .|+. ..+..+.   
T Consensus       296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  373 (450)
T 2y4t_A          296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQ  373 (450)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence            3456667777777777777777776542  2 5667777888888888888888888887764  3443 3333333   


Q ss_pred             ---------HHhhccC-----ChhHHHHHHHHH-HHhCC--CCC-------hhHHHHHHHHHHhcCChHHHH
Q 047571          421 ---------PVCSQLK-----ALNHGKEIHAYA-VKNQF--LPN-------VSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       421 ---------~~~~~~~-----~~~~a~~~~~~~-~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~a~  468 (681)
                               ..+...|     +.+++.+.++.+ .+...  .++       ...+..+..+|...++.++..
T Consensus       374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence                     1233334     566777777763 33211  122       236778888888888876644

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=2.6e-19  Score=184.48  Aligned_cols=293  Identities=10%  Similarity=-0.018  Sum_probs=140.8

Q ss_pred             hhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHH
Q 047571          312 VVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGY  388 (681)
Q Consensus       312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~  388 (681)
                      ..+..+...+.+.|+++.|...+..+.+.  .+.+...+..+..++...|++++|...|+.+.+   .+..++..+...|
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            34444555555555555555555555443  233444555555555555555555555554432   1344455555555


Q ss_pred             HhCCChHHHHHHHHHHHHcCcCCCH----HHHHHHHHH------------hhccCChhHHHHHHHHHHHhCCCCChhHHH
Q 047571          389 VSNGRLEQALRSIAWMQQEGFRPDV----VTVATVIPV------------CSQLKALNHGKEIHAYAVKNQFLPNVSIIT  452 (681)
Q Consensus       389 ~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  452 (681)
                      .+.|++++|...|+++.+.  .|+.    ..+..+...            +...|++++|...++.+.+.. +.+..++.
T Consensus       105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  181 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE  181 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence            5555555555555555443  2222    233333221            444444455555444444432 22344444


Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH
Q 047571          453 SLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL  532 (681)
Q Consensus       453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  532 (681)
                      .+..+|.+.|++++|                               ++.|+++.+.. +.+..++..+...+...|++++
T Consensus       182 ~l~~~~~~~g~~~~A-------------------------------~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~  229 (450)
T 2y4t_A          182 LRAECFIKEGEPRKA-------------------------------ISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL  229 (450)
T ss_dssp             HHHHHHHHTTCGGGG-------------------------------HHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCHHHH-------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            444444444444444                               44444444331 2233444444444444444444


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHH------------HHHHHhcCCHHHHHHHhhhCCC--CC-----hhhHHHHHHHHHcC
Q 047571          533 GKEIHGQVLKKDFASVPFVAAEN------------IKMYGMCGFLECAKLVFDAVPV--KG-----SITWTAIIEAYGYN  593 (681)
Q Consensus       533 a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~  593 (681)
                      |...++.+.+... .+...+..+            ...+.+.|++++|...|+++..  |+     ...|..+...+.+.
T Consensus       230 A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~  308 (450)
T 2y4t_A          230 SLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD  308 (450)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence            4444444443321 112222222            4555555555555555555443  22     22455555566666


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       594 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      |++++|+..++++.+.. +.+...|..+..+|...|++++|.+.++.+.+
T Consensus       309 g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          309 EKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            66666666666655532 23455566666666666666666666665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=2.6e-15  Score=162.42  Aligned_cols=535  Identities=11%  Similarity=0.058  Sum_probs=344.6

Q ss_pred             CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571           69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQG--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRT  146 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  146 (681)
                      ..+|.-....+++|...|.+.+|++++++..-.+  +.-+....+.++....+. +..+..+....+....       ..
T Consensus       982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~ 1053 (1630)
T 1xi4_A          982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------AP 1053 (1630)
T ss_pred             ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HH
Confidence            4566667888999999999999999999997442  123456677777776666 5566666665554211       33


Q ss_pred             HHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCch
Q 047571          147 KLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASAL  226 (681)
Q Consensus       147 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  226 (681)
                      -+...+...|.+++|..+|++... .....+.++.   ..+  ++++|.++.++.      -+..+|..+.+++...|++
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~--nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIG--NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHh--hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence            366777888999999999988641 1111222322   455  788888887753      2466788888999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047571          227 MQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIAGFAHNRLRWEALDCARWMIR  304 (681)
Q Consensus       227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  304 (681)
                      ++|...|...      .|...|..++.++.+.|++++|.+++....+  ++....+.++.+|++.+++++...+.    .
T Consensus      1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A         1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred             HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence            9999888553      4667788889999999999999999876443  33334455888888888887544432    1


Q ss_pred             cCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHH
Q 047571          305 EGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTAL  384 (681)
Q Consensus       305 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  384 (681)
                         .++...|..+...|...|+++.|...|..+          ..|..+..++++.|+++.|.+.+++.  .+..+|..+
T Consensus      1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev 1256 (1630)
T 1xi4_A         1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEV 1256 (1630)
T ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHH
Confidence               356667777888888999999999988874          36788999999999999999998876  456788888


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cC
Q 047571          385 MSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK--CG  462 (681)
Q Consensus       385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g  462 (681)
                      -.+|...|++..|......     +..+...+..++..|.+.|.+++|..+++...... +-....|+-+...|++  -+
T Consensus      1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A         1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred             HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence            8888888888888775543     33466667788888899999999999987776544 4455567666666665  34


Q ss_pred             ChHHHHHHHhhCCC--------CCcchHHHHHHHHHhcCChhHHHHHH-------------HHhHhCCCCCCHHHHHHHH
Q 047571          463 VLDYSLKLFDEMEV--------RNVISWTAMIDSCIENGRLDDALGVF-------------RSMQLSKHRPDSVAMARML  521 (681)
Q Consensus       463 ~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~-------------~~m~~~g~~p~~~~~~~ll  521 (681)
                      +..++.++|..-..        .+...|.-+...|.+.|+++.|....             ++...  -..|...|...+
T Consensus      1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai 1408 (1630)
T 1xi4_A         1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAI 1408 (1630)
T ss_pred             HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHH
Confidence            55566666654433        24567888888888999988887432             22111  133445555555


Q ss_pred             HHhcccc---------------chHHHHHHHH-------------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571          522 SVSGQLK---------------ALKLGKEIHG-------------QVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFD  573 (681)
Q Consensus       522 ~~~~~~~---------------~~~~a~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  573 (681)
                      .-|...+               +.+++.+++.             .+..   ..+..+-.++...|...++++.-..-.+
T Consensus      1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~---~n~~~Vneal~el~ieeed~~~Lr~si~ 1485 (1630)
T 1xi4_A         1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDYQALRTSID 1485 (1630)
T ss_pred             HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHH---hcchhhhHHHHHHhcCccchHHHHHHHh
Confidence            5444333               3334333333             2221   1223333444445544444432222221


Q ss_pred             hC------------CCCChhhHHHHH-HHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571          574 AV------------PVKGSITWTAII-EAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV  640 (681)
Q Consensus       574 ~~------------~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  640 (681)
                      .-            .+....-+..+. ..|.+.|++++|.+++++-..         |.-.+.+..+.|+.+.+.+++.-
T Consensus      1486 ~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~S~d~e~~e~ll~~ 1556 (1630)
T 1xi4_A         1486 AYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASESKDTELAEELLQW 1556 (1630)
T ss_pred             hccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            11            112222222222 234445777777777765432         44456666777777777766666


Q ss_pred             hhhcCCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 047571          641 MSRGYKIEALEEHYLIMIDILTRFGRIEEAHR  672 (681)
Q Consensus       641 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  672 (681)
                      ....    -+.+.|...+..+...=+.+-+++
T Consensus      1557 F~~~----~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A         1557 FLQE----EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred             HHhc----CChhHHHHHHHHHhccCCchHHHH
Confidence            5543    223455555555544444444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=4.1e-15  Score=160.87  Aligned_cols=221  Identities=13%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             hcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 047571          359 KCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAY  438 (681)
Q Consensus       359 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  438 (681)
                      ..+++++|.++.++..  +..+|..+..++...|++++|++.|.+.      -|...|..++.++.+.|++++|.+.+..
T Consensus      1088 ~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred             HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444444332  2334444455555555555555444321      2344444445555555555555555544


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHH
Q 047571          439 AVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMA  518 (681)
Q Consensus       439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  518 (681)
                      ..+..  ++....+.++.+|++.+++++...+.   ..++...|..+...|...|++++|..+|...         ..|.
T Consensus      1160 Ark~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A         1160 ARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred             HHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence            44332  22222223444455554444333222   2233333444444445555555555555442         2444


Q ss_pred             HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHH
Q 047571          519 RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQE  598 (681)
Q Consensus       519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  598 (681)
                      .+..++.+.|+++.|.+.+++.      .+..+|..+..+|...|++..|...... ...+...+..++..|.+.|.+++
T Consensus      1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A         1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHH
Confidence            4455555555555555544443      2234444444445555555555444432 11223334455555555555555


Q ss_pred             HHHHHHHHHh
Q 047571          599 ALSLFDKMRN  608 (681)
Q Consensus       599 a~~~~~~m~~  608 (681)
                      |+.+++....
T Consensus      1299 AI~LlE~aL~ 1308 (1630)
T 1xi4_A         1299 LITMLEAALG 1308 (1630)
T ss_pred             HHHHHHHHhc
Confidence            5555555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=1.7e-16  Score=157.86  Aligned_cols=309  Identities=12%  Similarity=0.024  Sum_probs=206.4

Q ss_pred             chHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHh
Q 047571          347 LFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVC  423 (681)
Q Consensus       347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  423 (681)
                      +..+..+...+...|++++|...|+.+.+   .+..++..+...+...|++++|...++++.+.. +-+...+..+...+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence            45566777788888888888888877653   256677778888888888888888888877653 22456677777778


Q ss_pred             hccCChhHHHHHHHHHHHhCCC--CChhHHHHH------------HHHHHhcCChHHHHHHHhhCCC---CCcchHHHHH
Q 047571          424 SQLKALNHGKEIHAYAVKNQFL--PNVSIITSL------------MIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMI  486 (681)
Q Consensus       424 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li  486 (681)
                      ...|++++|...++.+.+....  .+...+..+            ...+...|++++|.+.++++.+   .+...+..+.
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            8888888888888877764310  233344333            4667777888888887777653   3455677777


Q ss_pred             HHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH------------H
Q 047571          487 DSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA------------E  554 (681)
Q Consensus       487 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~  554 (681)
                      ..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++...+.... +...+.            .
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~  239 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE  239 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHH
Confidence            77777888888888887777653 445667777777777778888888777777765322 222222            2


Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC--CCh-----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV--KGS-----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  627 (681)
                      +...+.+.|++++|...++++..  |+.     ..+..+...+...|++++|+..+++..+.. +.+..++..+...+..
T Consensus       240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~  318 (359)
T 3ieg_A          240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLI  318 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            25556777777777777776555  332     224446666777777777777777777642 3366777777777777


Q ss_pred             cCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHh
Q 047571          628 AGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILT  662 (681)
Q Consensus       628 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~  662 (681)
                      .|++++|.+.++.+.+.   .|+ ...+..+..+..
T Consensus       319 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          319 EEMYDEAIQDYEAAQEH---NENDQQIREGLEKAQR  351 (359)
T ss_dssp             TTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence            77777777777766542   343 444555544443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=2.7e-16  Score=156.42  Aligned_cols=295  Identities=9%  Similarity=-0.070  Sum_probs=219.5

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      +..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            3456777788888888888888888887753 2356677777788888888888888888888764 4456778888888


Q ss_pred             HHhcCChHHHHHHHhhCCCCCc------chHHHH------------HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHH
Q 047571          458 YSKCGVLDYSLKLFDEMEVRNV------ISWTAM------------IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMAR  519 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  519 (681)
                      +...|++++|...++++.+.++      ..+..+            ...+...|++++|++.++++.+.. +.+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            8888888888888888765222      233333            467788888888888888887753 445677778


Q ss_pred             HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHH------------
Q 047571          520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWT------------  584 (681)
Q Consensus       520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~------------  584 (681)
                      +...+...|+++.|...++.+.+.. +.++..+..+...|...|++++|...++++..  |+ ...+.            
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  238 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI  238 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888754 34577888888888888888888888887765  33 22222            


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNH----FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      .+...+...|++++|+..++++.+.. +.+.    ..+..+..++.+.|++++|.+.++...+.  .+.+...+..++.+
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~  315 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEA  315 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            22556778888888888888888753 2233    23455777888888888888888888764  22246788888888


Q ss_pred             HhhcCCHHHHHHHHHhccC
Q 047571          661 LTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~  679 (681)
                      |.+.|++++|.+.+++...
T Consensus       316 ~~~~g~~~~A~~~~~~a~~  334 (359)
T 3ieg_A          316 YLIEEMYDEAIQDYEAAQE  334 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHh
Confidence            8888888888888887654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.76  E-value=6.1e-16  Score=151.83  Aligned_cols=283  Identities=14%  Similarity=0.020  Sum_probs=179.9

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      ...+..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   99 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY   99 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence            3344455555555566666666666555442 1223334444455555566666666666655543 3344555556666


Q ss_pred             HHhcC-ChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571          458 YSKCG-VLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG  533 (681)
Q Consensus       458 ~~~~g-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  533 (681)
                      +...| ++++|.+.|+++.+   .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence            66666 66666666665543   234455666666666666666666666665543 22234444555666666666666


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC------------CChhhHHHHHHHHHcCCChHHHHH
Q 047571          534 KEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV------------KGSITWTAIIEAYGYNDLCQEALS  601 (681)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~  601 (681)
                      ...++.+.+.. +.++..+..+...|...|++++|...++++..            ....+|..+...+...|++++|+.
T Consensus       179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  257 (330)
T 3hym_B          179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD  257 (330)
T ss_dssp             HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            66666666543 22456666667777777777777766665443            224678889999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH-hhcCCHH
Q 047571          602 LFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL-TRFGRIE  668 (681)
Q Consensus       602 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~  668 (681)
                      .+++..+.. +.+...+..+...+.+.|++++|.+.++++.+   ..| +...+..+..++ ...|+.+
T Consensus       258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG---LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT---TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc---cCCCchHHHHHHHHHHHHHhCchh
Confidence            999998853 44778899999999999999999999997764   345 477788888888 5666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=5.6e-15  Score=153.30  Aligned_cols=379  Identities=13%  Similarity=-0.033  Sum_probs=234.5

Q ss_pred             CcHHHhHHHHHHHh----cCChHHHHHHHhccCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhH
Q 047571          244 YLILRTSLIDMYFK----CGKIKLARRVFDETGD-RDIVVWGSMIAGFAH----NRLRWEALDCARWMIREGIYPNSVVL  314 (681)
Q Consensus       244 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~  314 (681)
                      +...+..+...|..    .+++++|...|+...+ .+...+..|...|..    .++.++|+++|++..+.|   +...+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            45555566666666    6777777777765443 355666677777777    777777777777776654   22233


Q ss_pred             HHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHH
Q 047571          315 TILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK----CRDMNSAWRVFYETEER-NEILWTALMSGYV  389 (681)
Q Consensus       315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~  389 (681)
                      ..                                    |...|..    .+++++|...|+...+. +...+..+...|.
T Consensus       115 ~~------------------------------------Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          115 QN------------------------------------LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYF  158 (490)
T ss_dssp             HH------------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HH------------------------------------HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            22                                    3333333    45555565555554433 4445555555565


Q ss_pred             h----CCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 047571          390 S----NGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK-  460 (681)
Q Consensus       390 ~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  460 (681)
                      .    .++.++|++.|++..+.|   +...+..+-..+..    .++.++|...++...+.|   +...+..+...|.. 
T Consensus       159 ~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g  232 (490)
T 2xm6_A          159 EGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG  232 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            5    566777777777666654   44455555555554    567777777777766654   34455556666654 


Q ss_pred             ---cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccc-----
Q 047571          461 ---CGVLDYSLKLFDEMEV-RNVISWTAMIDSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQL-----  527 (681)
Q Consensus       461 ---~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----  527 (681)
                         .+++++|..+|++..+ .+...+..+...|..    .+++++|+..|++..+.|   +...+..+...+...     
T Consensus       233 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~  309 (490)
T 2xm6_A          233 IGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVA  309 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCc
Confidence               6677777777776554 344555566666666    677777777777776654   334444555555544     


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHH
Q 047571          528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG---FLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEA  599 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a  599 (681)
                      ++.++|...++...+.+   ++..+..+..+|...|   +.++|.+.|++... .+...+..+...|..    .+++++|
T Consensus       310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A  386 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQA  386 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            67777777777777654   4456666677776655   67777777776655 456677777777777    7788888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhcCCCC-C-ChhHHHHHHHHHhhcCC--HHHHH
Q 047571          600 LSLFDKMRNGGFTPNHFTFKVLLSICNQ----AGFADEACRIFNVMSRGYKIE-A-LEEHYLIMIDILTRFGR--IEEAH  671 (681)
Q Consensus       600 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~--~~~A~  671 (681)
                      +..|++..+.|   +...+..|...|.+    .+++++|.++|+...+. +.. | +......+..++.+...  .+.|.
T Consensus       387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~  462 (490)
T 2xm6_A          387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN-DMNLFGTENRNITEKKLTAKQLQQAELLSQ  462 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCCCcCCHHHHHHHHhcCHhHHHHHHHHHH
Confidence            88888888755   46677777777777    78888888888887765 322 2 23334444444333222  22255


Q ss_pred             HHHHhc
Q 047571          672 RFREMS  677 (681)
Q Consensus       672 ~~~~~~  677 (681)
                      +++++-
T Consensus       463 ~~~~~~  468 (490)
T 2xm6_A          463 QYIEKY  468 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            565553

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=8.2e-17  Score=156.15  Aligned_cols=284  Identities=8%  Similarity=0.038  Sum_probs=90.4

Q ss_pred             cCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhh
Q 047571          258 CGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYV  337 (681)
Q Consensus       258 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  337 (681)
                      .|++++|.++++++..|  .+|..++.++.+.|++++|++.|.+      .+|..+|..++.++...|++++|...+...
T Consensus        16 ~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a   87 (449)
T 1b89_A           16 IGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA   87 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            34455555555555333  2555555555555555555555533      134445555555555555555555544444


Q ss_pred             hhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHH
Q 047571          338 LKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVA  417 (681)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  417 (681)
                      .+.   .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|++++|...|..+         ..|.
T Consensus        88 rk~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           88 RKK---ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHh---CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            432   22244455556666666666665555532   44445666666666666666666666544         2455


Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhH
Q 047571          418 TVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDD  497 (681)
Q Consensus       418 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  497 (681)
                      .+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence            5666666666666666655554      245556666666666666666655444433 222223345556666666666


Q ss_pred             HHHHHHHhHhCCCCCCHHHHHHHHHHhcc--ccchHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCCHHHHH
Q 047571          498 ALGVFRSMQLSKHRPDSVAMARMLSVSGQ--LKALKLGKEIHGQVLKKDFAS------VPFVAAENIKMYGMCGFLECAK  569 (681)
Q Consensus       498 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~  569 (681)
                      |..+++...... +--...|.-+--++++  .++..+..+.|..  +.++++      ....|..++..|...++++.|.
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~  302 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  302 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            666666555332 2222333333333332  2333333333321  111111      3456677777777777777766


Q ss_pred             HHhhh
Q 047571          570 LVFDA  574 (681)
Q Consensus       570 ~~~~~  574 (681)
                      ...-+
T Consensus       303 ~tm~~  307 (449)
T 1b89_A          303 ITMMN  307 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            65443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=4.1e-17  Score=163.06  Aligned_cols=297  Identities=11%  Similarity=-0.008  Sum_probs=187.1

Q ss_pred             HHhcCCHHHHHH-HHhhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCC
Q 047571          357 YCKCRDMNSAWR-VFYETEER-------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKA  428 (681)
Q Consensus       357 ~~~~~~~~~a~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  428 (681)
                      +...|++++|.. .+++....       +...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            344566666666 66544321       23456666667777777777777777766652 2344555566666666666


Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChhHHHHHHHHh
Q 047571          429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNV-ISWTAMIDSCIENGRLDDALGVFRSM  505 (681)
Q Consensus       429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m  505 (681)
                      +++|...++.+.+.. +.+..++..+...|...|++++|.+.++++..  |+. ..+..+...       ..        
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------  177 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG--------  177 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh--------
Confidence            666666666666554 33455555555555555555555555555432  111 111100000       00        


Q ss_pred             HhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-Chh
Q 047571          506 QLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFAS-VPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSI  581 (681)
Q Consensus       506 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~  581 (681)
                         ...+. ..+. .+..+...|++++|...++.+.+..... +..++..+..+|...|++++|...++++..  | +..
T Consensus       178 ---~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  252 (368)
T 1fch_A          178 ---GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL  252 (368)
T ss_dssp             ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ---hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence               00000 0011 1222336777888888888777754332 467788888888888888888888887665  3 467


Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC--------C-Chh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE--------A-LEE  652 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------~-~~~  652 (681)
                      +|..+...+...|++++|+..++++.+.. +.+...+..+..+|.+.|++++|.+.++.+.+.....        + ...
T Consensus       253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  331 (368)
T 1fch_A          253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN  331 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence            89999999999999999999999998853 4578899999999999999999999999886631111        1 157


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          653 HYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       653 ~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      .|..++.+|.+.|+.++|..++++
T Consensus       332 ~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          332 IWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHHhCChHhHHHhHHH
Confidence            899999999999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=8.1e-16  Score=149.20  Aligned_cols=343  Identities=11%  Similarity=0.057  Sum_probs=151.8

Q ss_pred             cCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHH
Q 047571          154 SCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTH  233 (681)
Q Consensus       154 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  233 (681)
                      +.|++++|.+.++++..|  ..|..+..++.+.|  ++.+|++.|.+      .+|..+|..++.++...|++++|...+
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g--~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKG--MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcC--CHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            456677777777777544  36777777777777  77778777765      357778888888888888999988877


Q ss_pred             HHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 047571          234 ALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVV  313 (681)
Q Consensus       234 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  313 (681)
                      +...+.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|..+|..+           
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------  148 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------
T ss_pred             HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------
Confidence            766664  44567788888899999998888877754   66678888888888888888888888755           


Q ss_pred             HHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCC
Q 047571          314 LTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGR  393 (681)
Q Consensus       314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~  393 (681)
                                                        ..|..++.++.+.|++++|.+.+.++.  ++.+|..++.+|+..|+
T Consensus       149 ----------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~e  192 (449)
T 1b89_A          149 ----------------------------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE  192 (449)
T ss_dssp             ----------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred             ----------------------------------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCc
Confidence                                              124678888888888888888888883  78889999999999999


Q ss_pred             hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--cCChHHHHHHH
Q 047571          394 LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK--CGVLDYSLKLF  471 (681)
Q Consensus       394 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~  471 (681)
                      ++.|......     +...+.-...++..|.+.|++++|..+++...... +-....|+-+.-+|++  -++..+.++.|
T Consensus       193 f~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          193 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             HHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999554443     22233335568888999999999999998877655 5567778877777776  45566666666


Q ss_pred             hhCCC--------CCcchHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571          472 DEMEV--------RNVISWTAMIDSCIENGRLDDALGVFRSMQLS-KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK  542 (681)
Q Consensus       472 ~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  542 (681)
                      ..-..        .+...|.-+...|...++++.|..+   |.+. ...-+...|..++.--....-+-+|..++-   .
T Consensus       267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~  340 (449)
T 1b89_A          267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E  340 (449)
T ss_dssp             STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h
Confidence            54433        2567899999999999999988874   3332 122234444444433222222223333322   1


Q ss_pred             cCCCCChhHHHHHHHHHHhcCCHHHHHHHhhh
Q 047571          543 KDFASVPFVAAENIKMYGMCGFLECAKLVFDA  574 (681)
Q Consensus       543 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  574 (681)
                          -.|...+.|+.++...=+...+..+|++
T Consensus       341 ----~~p~~l~~ll~~l~~~ld~~r~v~~~~~  368 (449)
T 1b89_A          341 ----FKPLLLNDLLMVLSPRLDHTRAVNYFSK  368 (449)
T ss_dssp             ----HCGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             ----cCHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence                1233445555555444455444444443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.74  E-value=7.4e-16  Score=151.22  Aligned_cols=287  Identities=11%  Similarity=-0.043  Sum_probs=223.0

Q ss_pred             CCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHH
Q 047571          342 RYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVAT  418 (681)
Q Consensus       342 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  418 (681)
                      +.+.+...+..+...+...|++++|..+|+.+.+.   +...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            34555666677788888888888888888876542   45567777788888889999999888888753 235566777


Q ss_pred             HHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCC
Q 047571          419 VIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGR  494 (681)
Q Consensus       419 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~  494 (681)
                      +...+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+  | +...+..+...|...|+
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence            777888888 8888998888887754 44567788888888899999999988888764  3 45667778888889999


Q ss_pred             hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC--------CCCChhHHHHHHHHHHhcCCHH
Q 047571          495 LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD--------FASVPFVAAENIKMYGMCGFLE  566 (681)
Q Consensus       495 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~  566 (681)
                      +++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.+..        .+....++..+..+|...|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            999999999888764 4456778888888889999999999998887642        1334678889999999999999


Q ss_pred             HHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHH
Q 047571          567 CAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC-NQAGFAD  632 (681)
Q Consensus       567 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~  632 (681)
                      +|...++++..   .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus       254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            99999988765   347788999999999999999999999998853 34778888888887 4556643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=2.6e-14  Score=149.87  Aligned_cols=411  Identities=10%  Similarity=0.010  Sum_probs=230.9

Q ss_pred             ChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--CChhhHHHHHHHH
Q 047571          209 NVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD--RDIVVWGSMIAGF  286 (681)
Q Consensus       209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~  286 (681)
                      |...|..++. +.+.|++++|..+++.+.+.. +.+...|..++..+.+.|++++|.++|++...  |++..|...+...
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~   89 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV   89 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            4557777776 366788888888888887652 44566777888888888888888888887665  5555666665432


Q ss_pred             -HhcCChHHHHH----HHHHHHHc-CCCCC-hhhHHHHHHHHhh---------hhhhcccchhhhhhhhccCCCCCchHH
Q 047571          287 -AHNRLRWEALD----CARWMIRE-GIYPN-SVVLTILLPVIGE---------AWARKLGQEVHAYVLKNERYSEELFVR  350 (681)
Q Consensus       287 -~~~~~~~~a~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~  350 (681)
                       ...|+.++|.+    +|+..... |..|+ ...|...+.....         .|+.+.|..+|+..++. ........|
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~  168 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLW  168 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHH
Confidence             34566666554    55555442 54443 3344444443332         45566666666655542 111111122


Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HcC---cCCCH--------
Q 047571          351 SSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQ------QEG---FRPDV--------  413 (681)
Q Consensus       351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~------~~g---~~p~~--------  413 (681)
                      ..........|. ..+..++.                 .+.+++..|..++..+.      +..   +.|+.        
T Consensus       169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~  230 (530)
T 2ooe_A          169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV  230 (530)
T ss_dssp             HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred             HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence            211111000000 00111110                 02234555665555432      111   23331        


Q ss_pred             HHHHHHHHHhhc----cCCh----hHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHH
Q 047571          414 VTVATVIPVCSQ----LKAL----NHGKEIHAYAVKNQFLPNVSIITSLMIMYSK-------CGVLD-------YSLKLF  471 (681)
Q Consensus       414 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~  471 (681)
                      ..|...+.....    .++.    ..+..+|+.+.... +.+...|..++..+.+       .|+++       +|..++
T Consensus       231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~  309 (530)
T 2ooe_A          231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY  309 (530)
T ss_dssp             HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence            233333322211    1222    35667777777653 4466677777777665       67776       788888


Q ss_pred             hhCCC---C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH--HHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          472 DEMEV---R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDS--VAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       472 ~~~~~---~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                      ++..+   | +...|..++..+.+.|++++|..+|+++.+.  .|+.  ..|...+..+.+.|+.+.|..+|+...+...
T Consensus       310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            87763   3 3556777777788888888888888888774  4432  3666667777777778888888877776421


Q ss_pred             CCChhHHHHHHHH-HHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCCC--HHHH
Q 047571          546 ASVPFVAAENIKM-YGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTPN--HFTF  618 (681)
Q Consensus       546 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~  618 (681)
                       .+...+...+.. +...|+.++|..+|+....  | +...|..++..+.+.|+.++|..+|++....+ ..|+  ...|
T Consensus       388 -~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw  466 (530)
T 2ooe_A          388 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  466 (530)
T ss_dssp             -CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred             -CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence             122222222222 2345666666666665554  3 35566666666666667777777776666642 1221  3355


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          619 KVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       619 ~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...+......|+.+.+..+.+++.+.
T Consensus       467 ~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          467 ARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55566666666666666666666553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.72  E-value=1e-13  Score=143.84  Aligned_cols=346  Identities=12%  Similarity=-0.008  Sum_probs=278.8

Q ss_pred             CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchH
Q 047571          274 RDIVVWGSMIAGFAH----NRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFV  349 (681)
Q Consensus       274 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  349 (681)
                      .+...+..+...|..    .+++++|+.+|++..+.|   +...                                    
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a------------------------------------   77 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPA------------------------------------   77 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH------------------------------------
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHH------------------------------------
Confidence            466677777777777    788899999988887653   2222                                    


Q ss_pred             HhHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHcCcCCCHHHHHHHH
Q 047571          350 RSSLVDMYCK----CRDMNSAWRVFYETEER-NEILWTALMSGYVS----NGRLEQALRSIAWMQQEGFRPDVVTVATVI  420 (681)
Q Consensus       350 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll  420 (681)
                      +..|...|..    .++.++|...|+...+. +...+..|...|..    .+++++|+..|++..+.|   +...+..+-
T Consensus        78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg  154 (490)
T 2xm6_A           78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMG  154 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            2344555555    67888888888876654 66778888888888    889999999999998876   455666666


Q ss_pred             HHhhc----cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh
Q 047571          421 PVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK----CGVLDYSLKLFDEMEV-RNVISWTAMIDSCIE  491 (681)
Q Consensus       421 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~  491 (681)
                      ..+..    .++.++|.+.|+...+.|   +...+..+...|..    .++.++|.+.|++..+ .+...+..+...|..
T Consensus       155 ~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~  231 (490)
T 2xm6_A          155 DAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYF  231 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            66665    789999999999998875   67788888888887    8999999999998765 466677888888876


Q ss_pred             ----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-
Q 047571          492 ----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ----LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC-  562 (681)
Q Consensus       492 ----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  562 (681)
                          .+++++|.+.|++..+.|   +...+..+...+..    .++.++|...++...+.+   ++..+..+..+|... 
T Consensus       232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~  305 (490)
T 2xm6_A          232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA  305 (490)
T ss_dssp             TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence                789999999999998865   34555556556655    789999999999998764   567788888999887 


Q ss_pred             ----CCHHHHHHHhhhCCC-CChhhHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCC
Q 047571          563 ----GFLECAKLVFDAVPV-KGSITWTAIIEAYGYND---LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ----AGF  630 (681)
Q Consensus       563 ----g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~  630 (681)
                          ++.++|...+++..+ .+...+..+...|...|   +.++|+++|++..+.|   +...+..|...|..    .++
T Consensus       306 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  382 (490)
T 2xm6_A          306 EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD  382 (490)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence                999999999998777 45677888888888766   8899999999999864   67788889999988    899


Q ss_pred             HHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhc
Q 047571          631 ADEACRIFNVMSRGYKIEALEEHYLIMIDILTR----FGRIEEAHRFREMS  677 (681)
Q Consensus       631 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  677 (681)
                      +++|.++|++..+. +   +...+..|..+|.+    .|+.++|.+++++.
T Consensus       383 ~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            99999999998874 3   45788889999998    89999999999874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.71  E-value=4.3e-16  Score=155.36  Aligned_cols=264  Identities=12%  Similarity=-0.019  Sum_probs=175.1

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      ...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+.. +.+..++..    
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~----  138 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA----  138 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH----
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH----
Confidence            3446666666666666666666666666542 2244455555555555566666665555555543 223444444    


Q ss_pred             HHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-----------HHHHHHHHHHhcc
Q 047571          458 YSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD-----------SVAMARMLSVSGQ  526 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~  526 (681)
                                                 +..+|...|++++|+..++++.+..  |+           ...+..+...+..
T Consensus       139 ---------------------------l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~  189 (365)
T 4eqf_A          139 ---------------------------LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVD  189 (365)
T ss_dssp             ---------------------------HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------C
T ss_pred             ---------------------------HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhh
Confidence                                       4444555555555555555544321  11           1223344566777


Q ss_pred             ccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHH
Q 047571          527 LKALKLGKEIHGQVLKKDFA-SVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSL  602 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~  602 (681)
                      .|++++|..+++++.+.... .++.++..+...|...|++++|...++++..   .+..+|..+...|...|++++|+..
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  269 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA  269 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777888777777776432 2577788888888888888888888887665   3477899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC----------CCChhHHHHHHHHHhhcCCHHHHHH
Q 047571          603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI----------EALEEHYLIMIDILTRFGRIEEAHR  672 (681)
Q Consensus       603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~  672 (681)
                      |+++.+.. +.+..++..+..+|.+.|++++|.+.++++.+...-          ..+...|..+..++...|+.+.|.+
T Consensus       270 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  348 (365)
T 4eqf_A          270 YTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA  348 (365)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            99999853 446889999999999999999999999988663111          0136789999999999999999999


Q ss_pred             HHHhc
Q 047571          673 FREMS  677 (681)
Q Consensus       673 ~~~~~  677 (681)
                      +.++-
T Consensus       349 ~~~~~  353 (365)
T 4eqf_A          349 ANLGD  353 (365)
T ss_dssp             HHTTC
T ss_pred             HHHhh
Confidence            87763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=5.3e-14  Score=147.56  Aligned_cols=414  Identities=8%  Similarity=0.048  Sum_probs=281.1

Q ss_pred             CCCcHHHhHHHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047571          242 VDYLILRTSLIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILL  318 (681)
Q Consensus       242 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  318 (681)
                      +-+...|..++. +.+.|++++|..+|+++.+  | +...|..++..+.+.|++++|..+|++.....  |+...|...+
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            446778888888 4789999999999999876  3 56789999999999999999999999998753  6766666655


Q ss_pred             HHH-hhhhhhcccch----hhhhhhhccCCCC-CchHHhHHHHHHHh---------cCCHHHHHHHHhhcCCCChhhHHH
Q 047571          319 PVI-GEAWARKLGQE----VHAYVLKNERYSE-ELFVRSSLVDMYCK---------CRDMNSAWRVFYETEERNEILWTA  383 (681)
Q Consensus       319 ~~~-~~~~~~~~a~~----~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~  383 (681)
                      ... ...|+.+.|.+    +|+......|..| +...|...+....+         .|+++.|..+|++..+........
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            433 34566666655    6666665545443 45566666665544         567777777777765421111111


Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH------hC---CCCC-------
Q 047571          384 LMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVK------NQ---FLPN-------  447 (681)
Q Consensus       384 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~~~-------  447 (681)
                      +...|..   ++...             +..+...++.  ...+++..|..++.....      ..   ++|+       
T Consensus       167 ~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~  228 (530)
T 2ooe_A          167 LWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ  228 (530)
T ss_dssp             HHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred             HHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence            1111111   00000             0011111111  123456666666655321      11   2333       


Q ss_pred             -hhHHHHHHHHHHhc----CCh----HHHHHHHhhCCC--C-CcchHHHHHHHHHh-------cCChh-------HHHHH
Q 047571          448 -VSIITSLMIMYSKC----GVL----DYSLKLFDEMEV--R-NVISWTAMIDSCIE-------NGRLD-------DALGV  501 (681)
Q Consensus       448 -~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~--~-~~~~~~~li~~~~~-------~~~~~-------~A~~~  501 (681)
                       ...|...+......    ++.    +++..+|++...  | +...|..++..+.+       .|+++       +|..+
T Consensus       229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~  308 (530)
T 2ooe_A          229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI  308 (530)
T ss_dssp             HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence             23444444332221    232    366777877765  3 56678777777775       79987       89999


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC
Q 047571          502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG  579 (681)
Q Consensus       502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~  579 (681)
                      |++..+.-.+-+...+..+...+...|++++|..+++.+++........+|..++..+.+.|++++|..+|++...  |+
T Consensus       309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            9999863234457788888888999999999999999999853221135888899999999999999999998876  22


Q ss_pred             -hhhHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC--hhHHH
Q 047571          580 -SITWTAIIEA-YGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL--EEHYL  655 (681)
Q Consensus       580 -~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~  655 (681)
                       ...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++........|+  ...|.
T Consensus       389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~  467 (530)
T 2ooe_A          389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA  467 (530)
T ss_dssp             CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence             2233322222 335899999999999998852 447889999999999999999999999999875334443  45788


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhc
Q 047571          656 IMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       656 ~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ..++...+.|+.+.+.++.+++
T Consensus       468 ~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          468 RFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            8889889999999999988765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.69  E-value=3e-15  Score=146.64  Aligned_cols=273  Identities=7%  Similarity=-0.048  Sum_probs=189.0

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      ...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            3456667777778888888888888777653 2255566666667777777777777777776653 3345555556666


Q ss_pred             HHhcCChHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHH-HH-HhccccchHH
Q 047571          458 YSKCGVLDYSLKLFDEMEV--RN-VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARM-LS-VSGQLKALKL  532 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~-~~~~~~~~~~  532 (681)
                      +...|++++|.+.++++.+  |+ ...+..+...                      .|+......+ .. .+...|++++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~  156 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE  156 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence            6666666666666555432  11 1111111000                      0111111111 12 3667788888


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          533 GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      |...++.+.+.. +.+...+..+...|...|++++|...++++..  | +...|..+...+...|++++|+..++++.+.
T Consensus       157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI  235 (327)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            888888887764 23577788888888889999999888887765  3 4678899999999999999999999999885


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-----------ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          610 GFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-----------LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       610 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      . +.+..++..+...+...|++++|.+.++++.+. ....           +...+..+..++.+.|+.++|.+++++.
T Consensus       236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3 447889999999999999999999999988764 2221           4678999999999999999999988754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.68  E-value=1.9e-15  Score=150.91  Aligned_cols=301  Identities=8%  Similarity=-0.123  Sum_probs=205.2

Q ss_pred             HHhhhhhhcccch-hhhhhhhccCCCC--CchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCC
Q 047571          320 VIGEAWARKLGQE-VHAYVLKNERYSE--ELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGR  393 (681)
Q Consensus       320 ~~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  393 (681)
                      ++...++++.|.. .+....+.....|  +...+..+...+.+.|++++|...|+.+.+   .+..+|..+..++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5667788999988 8877665422222  356678899999999999999999998764   367789999999999999


Q ss_pred             hHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571          394 LEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE  473 (681)
Q Consensus       394 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  473 (681)
                      +++|+..++++.+.. +.+..++..+...+...|++++|...++.+...... +...+..+...       ..       
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------  177 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------  177 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence            999999999998874 346778888999999999999999999999986522 22222211000       00       


Q ss_pred             CCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHH
Q 047571          474 MEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVA  552 (681)
Q Consensus       474 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  552 (681)
                      ...+. ..+..+. .+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.++..+
T Consensus       178 ~~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~  254 (368)
T 1fch_A          178 GAGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW  254 (368)
T ss_dssp             ---------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             hhccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence            00000 0111112 2225666777777777766643111 35666666677777777777777777766653 2346677


Q ss_pred             HHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-----------HHHH
Q 047571          553 AENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-----------HFTF  618 (681)
Q Consensus       553 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~  618 (681)
                      ..+..+|...|++++|...++++..  | +...|..+...|...|++++|...|+++.+.. +.+           ..+|
T Consensus       255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~  333 (368)
T 1fch_A          255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIW  333 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHH
Confidence            7777788888888888888777655  3 46678888999999999999999999887642 112           6889


Q ss_pred             HHHHHHHhccCCHHHHHHHHHH
Q 047571          619 KVLLSICNQAGFADEACRIFNV  640 (681)
Q Consensus       619 ~~l~~~~~~~g~~~~A~~~~~~  640 (681)
                      ..+..++...|++++|..++..
T Consensus       334 ~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          334 STLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHhCChHhHHHhHHH
Confidence            9999999999999999988763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=8.2e-17  Score=168.59  Aligned_cols=154  Identities=13%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHcCCcChhhHHHHHHHHH---HcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHH
Q 047571          176 WNALLRGAVIAGKKRYRGVLFNYMKMR---ELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLI  252 (681)
Q Consensus       176 ~~~ll~~~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  252 (681)
                      ||++|.+|++.|  ++++|..+|.+|.   ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus       130 ynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          130 LLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            444444444444  4444444444433   33566666666666666666666666666666666666666666655555


Q ss_pred             HHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccch
Q 047571          253 DMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQE  332 (681)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  332 (681)
                      +++|+.|+.                              .++|.++|++|.+.|+.||..||+.++....+.+-++.+.+
T Consensus       208 ~glcK~G~~------------------------------~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk  257 (1134)
T 3spa_A          208 QCMGRQDQD------------------------------AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK  257 (1134)
T ss_dssp             HHHHHHTCC------------------------------HHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred             HHHHhCCCc------------------------------HHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence            555554442                              23444555558888888888888877766666555554444


Q ss_pred             hhhhhhhccCCCCCchHHhHHHHHHHhcC
Q 047571          333 VHAYVLKNERYSEELFVRSSLVDMYCKCR  361 (681)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  361 (681)
                      +.....-....++...+...|.+.|.+.+
T Consensus       258 v~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             GCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             hCcccCCCCCCcccccchHHHHHHHccCC
Confidence            43222111111122444445556666544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.67  E-value=3.1e-15  Score=142.66  Aligned_cols=269  Identities=10%  Similarity=0.035  Sum_probs=198.6

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHcCcCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571          385 MSGYVSNGRLEQALRSIAWMQQEGFRPDV--VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG  462 (681)
Q Consensus       385 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  462 (681)
                      ++.....|++..|+..++.....  .|+.  .....+..++...|+++.|...++.    .-+|+..++..+...+...|
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            45567789999999888765443  3433  3445667888899999888876644    23567778888888888999


Q ss_pred             ChHHHHHHHhhCC----CC-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHH
Q 047571          463 VLDYSLKLFDEME----VR-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH  537 (681)
Q Consensus       463 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  537 (681)
                      +.++|.+.++++.    .| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.|+.++|...+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999998763    24 344566667888899999999998887      466778888888889999999999999


Q ss_pred             HHHHHcCCCCChh---HHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047571          538 GQVLKKDFASVPF---VAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF  611 (681)
Q Consensus       538 ~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~  611 (681)
                      +.+.+..  |+..   ....++..+...|++++|..+|+++..   .+...|+.+..++...|++++|.+.|++..+.. 
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-  230 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-  230 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            9988864  3322   112334555556889999999888766   346778888888999999999999999988753 


Q ss_pred             CCCHHHHHHHHHHHhccCCHHH-HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          612 TPNHFTFKVLLSICNQAGFADE-ACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       612 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      +-++.++..++..+...|+.++ +.++++++.+.   .|+..   .+.+...+.+.+++|..-+
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~---~~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHP---FIKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCCh---HHHHHHHHHHHHHHHHHHc
Confidence            4478888888888888888876 56788877654   44422   2335567777777776544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=3.7e-15  Score=148.54  Aligned_cols=272  Identities=7%  Similarity=-0.136  Sum_probs=185.3

Q ss_pred             CCchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHH
Q 047571          345 EELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIP  421 (681)
Q Consensus       345 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  421 (681)
                      .+...+..+...+.+.|++++|...|+.+.+   .+..+|..+...+...|++++|+..|++..+.. +.+...+..+..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            3455688899999999999999999998764   367889999999999999999999999998863 335778889999


Q ss_pred             HhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 047571          422 VCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGV  501 (681)
Q Consensus       422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~  501 (681)
                      .+...|++++|...++.+.+.... +...+..+.                     .....+..+...+...|++++|+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~  199 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL  199 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence            999999999999999998875411 111111110                     0112233334445555555555555


Q ss_pred             HHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C
Q 047571          502 FRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K  578 (681)
Q Consensus       502 ~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~  578 (681)
                      ++++.+.... ++..++..+...+...|++++|...++++.+.. +.++.++..+..+|...|++++|...++++..  |
T Consensus       200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  278 (365)
T 4eqf_A          200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP  278 (365)
T ss_dssp             HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            5555543211 134555555555555566666666665555543 22455666677777777777777777766554  3


Q ss_pred             -ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571          579 -GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT-----------PNHFTFKVLLSICNQAGFADEACRIFNV  640 (681)
Q Consensus       579 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~  640 (681)
                       +..+|..+...|...|++++|+..|+++.+....           .+...|..+..++...|+.+.+.++.+.
T Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence             3667888888899999999999999988764211           1367899999999999999999888764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.66  E-value=5.9e-14  Score=133.80  Aligned_cols=268  Identities=11%  Similarity=0.014  Sum_probs=211.0

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCCh
Q 047571          354 VDMYCKCRDMNSAWRVFYETEERNE----ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKAL  429 (681)
Q Consensus       354 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  429 (681)
                      ++-....|++..|+..++.....+.    .....+.++|...|+++.|+..++.    .-.|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence            3445667999999999988766432    3446678999999999999986654    2456777888888899999999


Q ss_pred             hHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571          430 NHGKEIHAYAVKNQFLP-NVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       430 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      +.|.+.++.+...+..| +...+..+..++...|++++|.+.+++  ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            99999999999877545 555667777899999999999999998  456778889999999999999999999999986


Q ss_pred             CCCCCHHHH---HHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-Chhh
Q 047571          509 KHRPDSVAM---ARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSIT  582 (681)
Q Consensus       509 g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~  582 (681)
                      .  |+....   ...+..+...|++++|..+++++.+.. +.++..++.+..++.+.|++++|...++++..  | +..+
T Consensus       160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            4  554321   123344445689999999999999873 55788999999999999999999999998777  4 4778


Q ss_pred             HHHHHHHHHcCCChHH-HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 047571          583 WTAIIEAYGYNDLCQE-ALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~-a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                      +..++..+...|+.++ +.++++++.+.  .| ++.+.    +...+.+.++++..
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH----HHHHHHHHHHHHHH
Confidence            9999999999999876 67899999984  56 44433    23344455555444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.65  E-value=9.5e-17  Score=168.12  Aligned_cols=128  Identities=11%  Similarity=0.121  Sum_probs=112.9

Q ss_pred             CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHH
Q 047571          343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETE-------ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVT  415 (681)
Q Consensus       343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  415 (681)
                      ...-..+|+++|++||+.|++++|.++|.+|.       .||+++||+||++||+.|++++|.++|++|.+.|+.||..|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            33345689999999999999999999997754       47999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCh-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047571          416 VATVIPVCSQLKAL-NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKL  470 (681)
Q Consensus       416 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  470 (681)
                      |+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++.++.+.+-++.+.++
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence            99999999999985 78999999999999999999999999877765444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.64  E-value=1.3e-14  Score=142.15  Aligned_cols=275  Identities=7%  Similarity=-0.099  Sum_probs=188.1

Q ss_pred             CchHHhHHHHHHHhcCCHHHHHHHHhhcCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHH
Q 047571          346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEE---RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV  422 (681)
Q Consensus       346 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  422 (681)
                      +...+..+...+...|++++|..+|+++.+   .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            445567788899999999999999998764   367788999999999999999999999998863 3467788888899


Q ss_pred             hhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH--HHHhcCChhHHHH
Q 047571          423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMID--SCIENGRLDDALG  500 (681)
Q Consensus       423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~  500 (681)
                      +...|++++|...++.+.+.. +.+...+..+...+                  ++......+..  .+...|++++|.+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~  159 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT  159 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence            999999999999999998864 22233333221100                  00001111111  1334455555555


Q ss_pred             HHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C
Q 047571          501 VFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K  578 (681)
Q Consensus       501 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~  578 (681)
                      .++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..+..+...|...|++++|...++++..  |
T Consensus       160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  237 (327)
T 3cv0_A          160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP  237 (327)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            555555432 2244455555555555566666666555555543 22355666677777777777777777776554  3


Q ss_pred             -ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          579 -GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-----------NHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       579 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                       +..+|..+...+...|++++|.+.++++.+.....           +...+..+..++.+.|++++|.++++...
T Consensus       238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             36678888999999999999999999988753111           47789999999999999999999987543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=4.5e-13  Score=138.61  Aligned_cols=371  Identities=10%  Similarity=-0.024  Sum_probs=179.9

Q ss_pred             cHHHhHHHHHHHhcCChHHHHHHHhccCC------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC
Q 047571          245 LILRTSLIDMYFKCGKIKLARRVFDETGD------------RDIVVWGSMIAGFAHNRLRWEALDCARWMIREG---IYP  309 (681)
Q Consensus       245 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p  309 (681)
                      ...|+.|...+...|++++|++.|++..+            ....+|+.+...|...|++++|...+++..+..   ..+
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            45566666666666777766666654321            134567777777777888888877777665420   000


Q ss_pred             ChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHh--cCCHHHHHHHHhhcCC--C-ChhhHHHH
Q 047571          310 NSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCK--CRDMNSAWRVFYETEE--R-NEILWTAL  384 (681)
Q Consensus       310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--~-~~~~~~~l  384 (681)
                      .                                ......++..+..++.+  .+++++|...|++..+  | +...+..+
T Consensus       131 ~--------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~  178 (472)
T 4g1t_A          131 Y--------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL  178 (472)
T ss_dssp             S--------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             c--------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            0                                00011122222222222  2345555555554432  2 23333333


Q ss_pred             HHH---HHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHh----hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 047571          385 MSG---YVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVC----SQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIM  457 (681)
Q Consensus       385 i~~---~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  457 (681)
                      ..+   +...++.++|++.+++..+.. +.+...+..+...+    ...++.++|.++++...... +.+..++..+...
T Consensus       179 ~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~  256 (472)
T 4g1t_A          179 AIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKF  256 (472)
T ss_dssp             HHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence            322   334455566666666655532 11223333222222    23345666666666666544 3445556666666


Q ss_pred             HHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571          458 YSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK  534 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  534 (681)
                      |.+.|++++|...+++..+  | +..++..+..+|...+....         ... .      ..........+..+.|.
T Consensus       257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~  320 (472)
T 4g1t_A          257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAV  320 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHH
T ss_pred             HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHH
Confidence            6666666666666666543  2 22334444433322111000         000 0      00000011123356667


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChh----hHHHHHH-HHHcCCChHHHHHHHHHHH
Q 047571          535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSI----TWTAIIE-AYGYNDLCQEALSLFDKMR  607 (681)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~a~~~~~~m~  607 (681)
                      ..++...+.+ +.+...+..+...|...|++++|...|++...  ++..    .+..+.. .+...|+.++|+..|++..
T Consensus       321 ~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          321 AHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             HHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7777666654 23455667777788888888888888776544  2211    2223322 2345778888888888887


Q ss_pred             hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          608 NGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       608 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      +  +.|+.......         ...+.++++...+.  .+.+..+|..|+.+|...|++++|++.+++...
T Consensus       400 ~--i~~~~~~~~~~---------~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe  458 (472)
T 4g1t_A          400 K--INQKSREKEKM---------KDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLE  458 (472)
T ss_dssp             H--SCCCCHHHHHH---------HHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred             h--cCcccHHHHHH---------HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7  45543322222         23334444444332  122467788888888888888888888776543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=1.9e-12  Score=133.82  Aligned_cols=80  Identities=15%  Similarity=0.018  Sum_probs=57.2

Q ss_pred             CHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHhccCCHHHHHHH
Q 047571          564 FLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH--FTFKVLLS-ICNQAGFADEACRI  637 (681)
Q Consensus       564 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~-~~~~~g~~~~A~~~  637 (681)
                      ..++|...+++...   .+..++..+...|...|++++|++.|++..+....|..  ..+..+.. .....|++++|++.
T Consensus       315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~  394 (472)
T 4g1t_A          315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH  394 (472)
T ss_dssp             HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            35667777766554   34667888999999999999999999999986433321  12333333 34577999999999


Q ss_pred             HHHhhh
Q 047571          638 FNVMSR  643 (681)
Q Consensus       638 ~~~~~~  643 (681)
                      +++..+
T Consensus       395 y~kal~  400 (472)
T 4g1t_A          395 FIEGVK  400 (472)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            997765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=4.1e-13  Score=122.10  Aligned_cols=192  Identities=15%  Similarity=0.021  Sum_probs=121.5

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571          446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS  522 (681)
Q Consensus       446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  522 (681)
                      ++...+..+...+.+.|++++|...|++..+  | +...+..+..++.+.|++++|+..+++..+..  |+         
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~---------   71 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PR---------   71 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------
Confidence            4445555555566666666666666655543  2 33455555555666666666666666555532  22         


Q ss_pred             HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHhhhCCC--C-ChhhHHHHHH
Q 047571          523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC-----------GFLECAKLVFDAVPV--K-GSITWTAIIE  588 (681)
Q Consensus       523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~--~-~~~~~~~l~~  588 (681)
                                               ++..+..+..+|...           |++++|...+++...  | +...|..+..
T Consensus        72 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~  126 (217)
T 2pl2_A           72 -------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL  126 (217)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence                                     233444444444444           666666666666554  3 3567888888


Q ss_pred             HHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH
Q 047571          589 AYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRI  667 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  667 (681)
                      .+...|++++|+..|++..+..  .+...+..+..++...|++++|++.++...+.   .| +...+..+..++.+.|++
T Consensus       127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC----
T ss_pred             HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence            9999999999999999999876  78888999999999999999999999988764   34 467888999999999999


Q ss_pred             HHHHHHHHhcc
Q 047571          668 EEAHRFREMSS  678 (681)
Q Consensus       668 ~~A~~~~~~~~  678 (681)
                      ++|++.+++..
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.53  E-value=6.6e-12  Score=127.95  Aligned_cols=376  Identities=11%  Similarity=0.008  Sum_probs=179.4

Q ss_pred             HHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCCh---HHHHHHHhccCCCChhhHHHHHHHHHhcC--
Q 047571          216 VIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKI---KLARRVFDETGDRDIVVWGSMIAGFAHNR--  290 (681)
Q Consensus       216 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~--  290 (681)
                      +...+.+.|++++|.+.|+...+.|   +...+..|...|...|+.   ++|.+.|++..+.+...+..+...+...+  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            4556667888999999999888876   334444556666677777   89999998877767777777777566555  


Q ss_pred             ---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcC----CH
Q 047571          291 ---LRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCR----DM  363 (681)
Q Consensus       291 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~  363 (681)
                         ++++|+.+|++..+.|..   ..+..+...+...+..+.+...+..+.+. .-..+......+...|...+    +.
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a-~~~g~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQW-QAAGYPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHH-HHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred             CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCCcccCH
Confidence               778999999998886633   25555666666655544444444443332 11112334444555555554    33


Q ss_pred             HHHHHHHhhcCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc----CChhHHHHHH
Q 047571          364 NSAWRVFYETEERNEILWTALMSGYVSNG---RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL----KALNHGKEIH  436 (681)
Q Consensus       364 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~~  436 (681)
                      +.+..+++.....+...+..+...|...|   +.++|+..|++..+.|. ++...+..+-..+...    ++.++|...|
T Consensus       162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            33444444444445555555555555555   55556666555555542 2222222233333222    3444555555


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHH-H--HhcCChhHHHHHHHHhHhCCCCCC
Q 047571          437 AYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDS-C--IENGRLDDALGVFRSMQLSKHRPD  513 (681)
Q Consensus       437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~g~~p~  513 (681)
                      +... .|   +.                               ..+..+... +  ...+++++|++.|++..+.|   +
T Consensus       241 ~~aa-~g---~~-------------------------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~  282 (452)
T 3e4b_A          241 EKIA-PG---YP-------------------------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q  282 (452)
T ss_dssp             HHHG-GG---ST-------------------------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred             HHHc-CC---CH-------------------------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence            4443 21   22                               233333333 1  23445555555555555444   2


Q ss_pred             HHHHHHHHHHhcccc-----chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHhhhCCCC-ChhhH
Q 047571          514 SVAMARMLSVSGQLK-----ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECAKLVFDAVPVK-GSITW  583 (681)
Q Consensus       514 ~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~  583 (681)
                      ......+-..|. .|     +.++|...|++..    .-++.....+..+|..    ..+.++|...|++...+ +....
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~  357 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD  357 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence            233333333332 22     4455555554443    2234444444444444    23556666666555442 34455


Q ss_pred             HHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          584 TAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       584 ~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..|...|..    ..+.++|..+|+...+.| .++.......+......++..+|.++.++..+
T Consensus       358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            555555553    346777777777777766 33333322223223333455566666655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.4e-12  Score=122.66  Aligned_cols=224  Identities=8%  Similarity=-0.056  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC--CChhHHHHHHHH
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL--PNVSIITSLMIM  457 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~  457 (681)
                      .|..+...+...|++++|+..+++..+..  .+...+..+..++...|++++|...++.+.+....  ++..        
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------   76 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------   76 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence            45555566666666666666666665554  45555555555555556666665555554442210  0100        


Q ss_pred             HHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHH
Q 047571          458 YSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH  537 (681)
Q Consensus       458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  537 (681)
                                         .....|..+...+...|++++|+..|++....  .|+.       ..+...|++++|...+
T Consensus        77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~  128 (258)
T 3uq3_A           77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA  128 (258)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence                               00234555555566666666666666666553  3332       2344456666666666


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571          538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN  614 (681)
Q Consensus       538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~  614 (681)
                      +.+.+.. +.+...+..+...+...|++++|...++++..   .+...|..+...+...|++++|+..+++..+.. +.+
T Consensus       129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~  206 (258)
T 3uq3_A          129 EAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF  206 (258)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence            6666532 12345566667777777777777777776654   335677778888888888888888888888753 446


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          615 HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       615 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ...+..+..++.+.|++++|.+.++...+
T Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          207 VRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77788888888888888888888887765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=3.5e-12  Score=121.02  Aligned_cols=225  Identities=10%  Similarity=-0.064  Sum_probs=164.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHHHHHHHhcc
Q 047571          452 TSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD--SVAMARMLSVSGQ  526 (681)
Q Consensus       452 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~  526 (681)
                      ......+...|++++|...|+++.+  | +...+..+..+|...|++++|+..+++..+.+-.|+  ...+..+...+..
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            3445556666677777776666543  2 344666677777777777777777777776332222  2346667777777


Q ss_pred             ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHH
Q 047571          527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLF  603 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~  603 (681)
                      .|++++|...++...+.. +.+..++..+..+|...|++++|...+++...  | +...|..+...+...+++++|++.+
T Consensus        87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888777777654 23567888999999999999999999998887  3 3566777773444456999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhhhcCCCCCC------hhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          604 DKMRNGGFTPNHFTFKVLLSICNQAGF---ADEACRIFNVMSRGYKIEAL------EEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       604 ~~m~~~g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      +++.+.. +.+...+..+..++...|+   +++|...++++.+.....|+      ...|..+..+|.+.|++++|.+.+
T Consensus       166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  244 (272)
T 3u4t_A          166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW  244 (272)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999853 4467888888888888888   88899999888765333343      257888999999999999999999


Q ss_pred             Hhcc
Q 047571          675 EMSS  678 (681)
Q Consensus       675 ~~~~  678 (681)
                      ++..
T Consensus       245 ~~al  248 (272)
T 3u4t_A          245 KNIL  248 (272)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.48  E-value=3e-11  Score=123.09  Aligned_cols=385  Identities=11%  Similarity=0.019  Sum_probs=201.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHhCCCCchhHHHHHHHHhhc
Q 047571           78 DIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSL---VEGRLIHTHIRINGLENNGFLRTKLVKMYTS  154 (681)
Q Consensus        78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  154 (681)
                      +...+.+.|++++|+++|++..+.|   +...+..+...+...|+.   ++|..+|+...+.    ++..+..|...+..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            4555566666666666666665554   233334444444445554   5555555555432    22333333332222


Q ss_pred             CCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHH
Q 047571          155 CGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHA  234 (681)
Q Consensus       155 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  234 (681)
                      .+...                            ..+.++|+..|++..+.|.   ...+..+...|...+..+.+.+.++
T Consensus        82 ~~~~~----------------------------~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~  130 (452)
T 3e4b_A           82 KPGAT----------------------------EAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQ  130 (452)
T ss_dssp             C--CC----------------------------HHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHH
T ss_pred             CCCCC----------------------------CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence            22000                            0155666666666666542   2255555666655555444444444


Q ss_pred             HHHHhCCCCCcHHHhHHHHHHHhcCC----hHHHHHHHhccCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCC
Q 047571          235 LLIKNGFVDYLILRTSLIDMYFKCGK----IKLARRVFDETGDRDIVVWGSMIAGFAHNR---LRWEALDCARWMIREGI  307 (681)
Q Consensus       235 ~~~~~g~~~~~~~~~~li~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~  307 (681)
                      .+.+..-..+......|...|...+.    .+.+..+++.....+...+..+...|...|   +.++|++.|++..+.|.
T Consensus       131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~  210 (452)
T 3e4b_A          131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT  210 (452)
T ss_dssp             HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence            33332212234555667777777774    455566666666777778888999999999   88899999988887763


Q ss_pred             CCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHH
Q 047571          308 YPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSG  387 (681)
Q Consensus       308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~  387 (681)
                      . +...+..+...+...                                ....++.++|..+|+.....+...+..+...
T Consensus       211 ~-~a~~~~~Lg~~y~~g--------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          211 V-TAQRVDSVARVLGDA--------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQL  257 (452)
T ss_dssp             S-CHHHHHHHHHHHTCG--------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHhCC--------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            2 222222222222111                                0112567777777776662255566666655


Q ss_pred             -H--HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccC-----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571          388 -Y--VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLK-----ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS  459 (681)
Q Consensus       388 -~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  459 (681)
                       +  ...++.++|+..|++..+.|   +...+..+-..+. .|     +.++|...|+...    +-+...+..|...|.
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence             3  35677788888888777765   4444444444444 33     7777777777665    234555555665555


Q ss_pred             h----cCChHHHHHHHhhCCCC-CcchHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccch
Q 047571          460 K----CGVLDYSLKLFDEMEVR-NVISWTAMIDSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKAL  530 (681)
Q Consensus       460 ~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  530 (681)
                      .    ..++++|...|+...++ +......|...|..    ..+.++|...|+...+.|. ++.......+......++.
T Consensus       330 ~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~  408 (452)
T 3e4b_A          330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQR  408 (452)
T ss_dssp             TTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHH
Confidence            5    33777777777766553 44455555555553    3467777777777777663 2233233333333444556


Q ss_pred             HHHHHHHHHHHH
Q 047571          531 KLGKEIHGQVLK  542 (681)
Q Consensus       531 ~~a~~~~~~~~~  542 (681)
                      .++..+.++..+
T Consensus       409 ~~a~~~~~~~~~  420 (452)
T 3e4b_A          409 AEGQRLVQQELA  420 (452)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.3e-12  Score=121.04  Aligned_cols=221  Identities=12%  Similarity=0.064  Sum_probs=153.0

Q ss_pred             chHHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcC--CC----HHHHHH
Q 047571          347 LFVRSSLVDMYCKCRDMNSAWRVFYETEE--RNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFR--PD----VVTVAT  418 (681)
Q Consensus       347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p~----~~~~~~  418 (681)
                      ...+..+...+...|++++|...|+...+  .+..+|..+..++...|++++|+..+++..+....  ++    ...+..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            45678889999999999999999977543  56788999999999999999999999998775321  12    467778


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCCh
Q 047571          419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRL  495 (681)
Q Consensus       419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~  495 (681)
                      +...+...|++++|...++.+.+..  |+.       ..+.+.|++++|...++++...   +...+..+...+...|++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence            8888899999999999999888754  332       3455556677777777765542   234556666666777777


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ++|+..+++..+.. +.+...+..+..++...|++++|...++...+...                              
T Consensus       156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------------------------  204 (258)
T 3uq3_A          156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------------------------  204 (258)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------------
T ss_pred             HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------------------------------
Confidence            77777777666542 22344444444444444555555544444443321                              


Q ss_pred             CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          576 PVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       576 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                        .+...|..+...+...|++++|...+++..+.
T Consensus       205 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          205 --NFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence              22456677777777888888888888877663

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.45  E-value=3.5e-12  Score=115.93  Aligned_cols=195  Identities=11%  Similarity=0.045  Sum_probs=118.8

Q ss_pred             CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 047571           69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKL  148 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  148 (681)
                      |+++..+..+...+.+.|++++|+..|++..+.. |.+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            5677888999999999999999999999998875 4578889999999999999999999999999887 5677788888


Q ss_pred             HHHhhcC-----------CChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 047571          149 VKMYTSC-----------GSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVI  217 (681)
Q Consensus       149 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  217 (681)
                      ..++...           |++++|+..|++.                                 .+.. +-+...+..+-
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---------------------------------l~~~-P~~~~~~~~lg  125 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDA---------------------------------ERVN-PRYAPLHLQRG  125 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---------------------------------HHHC-TTCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHH---------------------------------HHhC-cccHHHHHHHH
Confidence            8888877           6666666666543                                 3321 11223344444


Q ss_pred             HHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHH
Q 047571          218 KSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWE  294 (681)
Q Consensus       218 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  294 (681)
                      ..+...|++++|...++...+..  .+...+..+..+|...|++++|...|++..+   .+...+..+...+...|++++
T Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred             HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            44445555555555555544444  3444444455555555555555555544322   233444455555555555555


Q ss_pred             HHHHHHH
Q 047571          295 ALDCARW  301 (681)
Q Consensus       295 a~~~~~~  301 (681)
                      |+..|++
T Consensus       204 A~~~~~~  210 (217)
T 2pl2_A          204 AARAAAL  210 (217)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            5555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.45  E-value=2e-11  Score=114.18  Aligned_cols=190  Identities=13%  Similarity=-0.023  Sum_probs=87.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571          483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC  562 (681)
Q Consensus       483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  562 (681)
                      ..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~  118 (252)
T 2ho1_A           41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQ  118 (252)
T ss_dssp             HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHH
Confidence            333344444444444444444444321 2223334444444444444444444444444332 11334444444445555


Q ss_pred             CCHHHHHHHhhhCCC----C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047571          563 GFLECAKLVFDAVPV----K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI  637 (681)
Q Consensus       563 g~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~  637 (681)
                      |++++|...++++..    | +...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.++
T Consensus       119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~  197 (252)
T 2ho1_A          119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY  197 (252)
T ss_dssp             TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555444433    1 13344445555555555555555555555432 22445555555555555555555555


Q ss_pred             HHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          638 FNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ++.+.+.  .+.+...+..+..++.+.|+.++|.++++++
T Consensus       198 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          198 YDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            5554432  1122344555555555555555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.45  E-value=5.7e-12  Score=119.72  Aligned_cols=243  Identities=14%  Similarity=0.028  Sum_probs=137.8

Q ss_pred             CCChHHHHHHHHHHHHcCc---CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571          391 NGRLEQALRSIAWMQQEGF---RPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS  467 (681)
Q Consensus       391 ~~~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  467 (681)
                      .|++++|+..++++.+...   +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            4566777777777766531   1134456666666777777777777777777654 34566677777777777777777


Q ss_pred             HHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcC
Q 047571          468 LKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKD  544 (681)
Q Consensus       468 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  544 (681)
                      ...|+++.+   .+...+..+...|...|++++|...++++.+.  .|+.......+..+...|++++|...+.......
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            777776654   24566777777788888888888888877764  3444444444444455566777777766655542


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC--C-CHHHHHHH
Q 047571          545 FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT--P-NHFTFKVL  621 (681)
Q Consensus       545 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~l  621 (681)
                      . ++...                               + .++..+...++.++|+..+++..+....  | +...+..+
T Consensus       175 ~-~~~~~-------------------------------~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  221 (275)
T 1xnf_A          175 D-KEQWG-------------------------------W-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL  221 (275)
T ss_dssp             C-CCSTH-------------------------------H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             C-cchHH-------------------------------H-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence            1 12111                               1 1333344444445555555554432100  0 13455555


Q ss_pred             HHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      ...+.+.|++++|.+.++++.+.   .|+.  +.....++...|++++|++.+
T Consensus       222 a~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          222 GKYYLSLGDLDSATALFKLAVAN---NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT---CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhC---Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            66666666666666666655442   2311  222244555556666665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.44  E-value=2.9e-11  Score=114.66  Aligned_cols=220  Identities=13%  Similarity=-0.013  Sum_probs=138.5

Q ss_pred             CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHH
Q 047571          412 DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK----CGVLDYSLKLFDEMEV-RNVISWTAMI  486 (681)
Q Consensus       412 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li  486 (681)
                      +...+..+-..+...|++++|...|+...+.   .+...+..+...|..    .+++++|...|++..+ .+...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3445556666677777777777777777762   244556666667777    7777777777766554 3455666666


Q ss_pred             HHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          487 DSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ----LKALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       487 ~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      ..|..    .+++++|+..|++..+.+   +...+..+...+..    .++.++|...+++..+.+   ++..+..+..+
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            66777    777777777777776654   45556666666666    667777777777666654   44555556666


Q ss_pred             HHh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 047571          559 YGM----CGFLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ--  627 (681)
Q Consensus       559 ~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--  627 (681)
                      |..    .+++++|...+++... .+...+..+...|..    .+++++|+..+++..+.+   +...+..+...|..  
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCC
Confidence            665    6666666666665544 334555556666666    666666666666666543   14455555666665  


Q ss_pred             --cCCHHHHHHHHHHhhh
Q 047571          628 --AGFADEACRIFNVMSR  643 (681)
Q Consensus       628 --~g~~~~A~~~~~~~~~  643 (681)
                        .+++++|.+++++..+
T Consensus       233 ~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHH
Confidence              6666666666665554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.42  E-value=2e-12  Score=131.06  Aligned_cols=269  Identities=11%  Similarity=-0.038  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCH----HHHHHHHHHhhccCChhHHHHHHHHHHHhC-----CCCChhH
Q 047571          380 LWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDV----VTVATVIPVCSQLKALNHGKEIHAYAVKNQ-----FLPNVSI  450 (681)
Q Consensus       380 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  450 (681)
                      .+..+...+...|++++|+..|++..+.+.. +.    ..+..+...+...|++++|...++++.+..     .+....+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            4455666777888888888888887775321 22    355666667777777777777777765421     0112334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC-----C----CcchHHHHHHHHHhcCC----------hhHHHHHHHHhHhCCCC
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEMEV-----R----NVISWTAMIDSCIENGR----------LDDALGVFRSMQLSKHR  511 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~  511 (681)
                      +..+...|...|++++|...+++..+     .    ...++..+...|...|+          +++|...          
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------  198 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------  198 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence            55555566666666666665554432     0    11234444444444444          0000000          


Q ss_pred             CCHHHHHHHHHHhccccchHHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC--
Q 047571          512 PDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----DF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG--  579 (681)
Q Consensus       512 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~--  579 (681)
                                        ++.|...+++..+.    +. ......+..+...|...|++++|...+++...     .+  
T Consensus       199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (411)
T 4a1s_A          199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA  260 (411)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence                              44444444433321    10 11133555566666667777777666665544     11  


Q ss_pred             --hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---CCCC
Q 047571          580 --SITWTAIIEAYGYNDLCQEALSLFDKMRNGGF----T-PNHFTFKVLLSICNQAGFADEACRIFNVMSRGY---KIEA  649 (681)
Q Consensus       580 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~  649 (681)
                        ..++..+...|...|++++|+..+++..+...    . ....++..+...+...|++++|.+++++..+..   +..+
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  340 (411)
T 4a1s_A          261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI  340 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence              22667777778888888888888877665310    0 124567777788888888888888887765421   1111


Q ss_pred             -ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          650 -LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       650 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                       ....+..+..+|.+.|++++|.+++++.
T Consensus       341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          341 GEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             1456777888888888888888887764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.41  E-value=2e-11  Score=114.22  Aligned_cols=196  Identities=11%  Similarity=-0.041  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHH
Q 047571          413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSC  489 (681)
Q Consensus       413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  489 (681)
                      ...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++.+   .+...+..+...|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            3445555566666667777777766666553 33445555556666666666666666655432   2334455555555


Q ss_pred             HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 047571          490 IENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAK  569 (681)
Q Consensus       490 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  569 (681)
                      ...|++++|++.++++...+..|+                                  +...+..+..+|...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~----------------------------------~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPE----------------------------------RSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTT----------------------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcc----------------------------------cHHHHHHHHHHHHHcCCHHHHH
Confidence            555555555555555554222232                                  2334445555555556666665


Q ss_pred             HHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          570 LVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       570 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..++++..   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            55555443   235567788888888899999999999888753 457777888888888999999999999888764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.40  E-value=7.9e-11  Score=111.59  Aligned_cols=222  Identities=11%  Similarity=-0.045  Sum_probs=145.6

Q ss_pred             ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhCCCCChhHHH
Q 047571          377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIIT  452 (681)
Q Consensus       377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  452 (681)
                      +..++..+...+...|++++|+..|++..+.+   +...+..+...+..    .+++++|...++...+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            45556666667777777777777777766632   34455555566666    777777777777776654   556666


Q ss_pred             HHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571          453 SLMIMYSK----CGVLDYSLKLFDEMEV-RNVISWTAMIDSCIE----NGRLDDALGVFRSMQLSKHRPDSVAMARMLSV  523 (681)
Q Consensus       453 ~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  523 (681)
                      .+...|..    .+++++|...|++..+ .+...+..+...|..    .+++++|+..|++..+.+   +...+..+...
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            66667776    7777777777766554 345566666666766    777777777777777654   44455555555


Q ss_pred             hcc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc--
Q 047571          524 SGQ----LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECAKLVFDAVPV-KGSITWTAIIEAYGY--  592 (681)
Q Consensus       524 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~--  592 (681)
                      +..    .+++++|...++...+.+   ++..+..+..+|..    .+++++|...+++... .+...+..+...|..  
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence            555    667777777777766653   35566666777777    7777777777766554 235556666666666  


Q ss_pred             --CCChHHHHHHHHHHHhCC
Q 047571          593 --NDLCQEALSLFDKMRNGG  610 (681)
Q Consensus       593 --~~~~~~a~~~~~~m~~~g  610 (681)
                        .+++++|++.|++..+.|
T Consensus       233 ~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHT
T ss_pred             CcccCHHHHHHHHHHHHHcC
Confidence              677777777777776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=3.3e-11  Score=118.66  Aligned_cols=242  Identities=10%  Similarity=0.054  Sum_probs=145.7

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCC-hhHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKA-LNHGKEIHAYAVKNQFLPNVSIITSLMI  456 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  456 (681)
                      ..+|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|+ +++|...++.+.+.. +-+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            4456667777777777777777777776642 1234455555666666665 777777777666654 334555666666


Q ss_pred             HHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHH
Q 047571          457 MYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLG  533 (681)
Q Consensus       457 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  533 (681)
                      ++.+.|++++|+..|+++.+   .+...|..+..++.+.|++++|+..|+++++.. +-+                    
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~--------------------  233 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRN--------------------  233 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTC--------------------
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC--------------------
Confidence            66666666666666665543   234455555555666666666666666655542 122                    


Q ss_pred             HHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHH-----HHHhhhCCC--C-ChhhHHHHHHHHHcCC--ChHHHHHH
Q 047571          534 KEIHGQVLKKDFASVPFVAAENIKMYGM-CGFLECA-----KLVFDAVPV--K-GSITWTAIIEAYGYND--LCQEALSL  602 (681)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~a~~~  602 (681)
                                     ...|..+..++.. .|..++|     ...+++...  | +...|+.+...+...|  ++++|++.
T Consensus       234 ---------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~  298 (382)
T 2h6f_A          234 ---------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ  298 (382)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence                           3444444444444 3332333     244443333  2 3557777777777777  67888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccC---------CHHHHHHHHHHh-hhcCCCCCC-hhHHHHHHHHHh
Q 047571          603 FDKMRNGGFTPNHFTFKVLLSICNQAG---------FADEACRIFNVM-SRGYKIEAL-EEHYLIMIDILT  662 (681)
Q Consensus       603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~  662 (681)
                      ++++ +. -+.+...+..++..|.+.|         ..++|+++++++ .+   ..|. ...|..+...+.
T Consensus       299 ~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~---~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          299 LLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE---KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHH
T ss_pred             HHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHHH
Confidence            8887 43 2446778888888887764         257888888877 43   3454 455666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=4.6e-11  Score=109.43  Aligned_cols=195  Identities=11%  Similarity=-0.025  Sum_probs=113.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571          447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV  523 (681)
Q Consensus       447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  523 (681)
                      +...+..+...+...|++++|.+.++++.+   .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            345566667777777777777777776553   244566666777777777777777777776643 3345566666666


Q ss_pred             hccc-cchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHH
Q 047571          524 SGQL-KALKLGKEIHGQVLKKDFASV-PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQE  598 (681)
Q Consensus       524 ~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~  598 (681)
                      +... |++++|...++.+.+.+..|+ ...+..+..++...|++++|...++++..  | +...+..+...+...|++++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            6666 777777777666665222222 44455555555555555555555554443  2 24445555555555555555


Q ss_pred             HHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          599 ALSLFDKMRNGGFT-PNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       599 a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      |...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus       166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            555555555532 2 3444454455555555555555555555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=6.2e-12  Score=116.93  Aligned_cols=196  Identities=11%  Similarity=-0.034  Sum_probs=130.7

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571          446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS  522 (681)
Q Consensus       446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  522 (681)
                      .....+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            3455667777778888888888888887754   345677777888888888888888888887753 345667777777


Q ss_pred             HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHH
Q 047571          523 VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEA  599 (681)
Q Consensus       523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a  599 (681)
                      .+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++..   .+...+..+...+...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888877754 33566777777788888888888888776655   3456677777777788888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          600 LSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       600 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +..++++.+.. +.+..++..+..++...|++++|.+.++++.+.
T Consensus       179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            88888877753 345677777778888888888888888877653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.39  E-value=7.2e-12  Score=126.65  Aligned_cols=291  Identities=12%  Similarity=-0.023  Sum_probs=182.7

Q ss_pred             ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHh----CCCC-C
Q 047571          377 NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD----VVTVATVIPVCSQLKALNHGKEIHAYAVKN----QFLP-N  447 (681)
Q Consensus       377 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~  447 (681)
                      ....+......+...|++++|...|++..+.+.. +    ...+..+...+...|+++.|...++.+...    +..| .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3445667778888999999999999998876322 2    245667777888899999999998886543    1111 2


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCC--------------------hhHH
Q 047571          448 VSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGR--------------------LDDA  498 (681)
Q Consensus       448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A  498 (681)
                      ..++..+...|...|++++|...+++..+     ++    ..++..+...|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            44667777888888888888888877653     22    2367777777888888                    7888


Q ss_pred             HHHHHHhHhC----CCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHH
Q 047571          499 LGVFRSMQLS----KHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SV----PFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       499 ~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a  568 (681)
                      +..+++....    +..|. ..++..+...+...|++++|...+++..+.... ++    ...+..+...|...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            8877766442    11111 234556666677777777777777766643110 11    23556666667777777777


Q ss_pred             HHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHH
Q 047571          569 KLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       569 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      ...+++...     ++    ..++..+...|...|++++|...+++..+.    +-.+ ...++..+...|...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            776665543     11    345566666666777777777776666542    1111 144566666666777777777


Q ss_pred             HHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHH
Q 047571          635 CRIFNVMSRGYKIEAL----EEHYLIMIDILTRFGRIE  668 (681)
Q Consensus       635 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~  668 (681)
                      .+.+++..+...-..+    ..++..+..++...|+..
T Consensus       327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            7777766654222222    233444555555555444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=2.9e-12  Score=121.78  Aligned_cols=242  Identities=8%  Similarity=-0.159  Sum_probs=168.1

Q ss_pred             cCCHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHH
Q 047571          360 CRDMNSAWRVFYETEER-------NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHG  432 (681)
Q Consensus       360 ~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  432 (681)
                      .|++++|...|+.+.+.       +..+|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            46677777777666542       35567888888888899999999988888763 23567788888888889999999


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 047571          433 KEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKH  510 (681)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  510 (681)
                      ...++.+.+.. +.+..++..+...|.+.|++++|...++++.+  |+.......+..+...|++++|...+++..... 
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-  174 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-  174 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            99998888864 44677888888899999999999999988764  554444455555677799999999998877653 


Q ss_pred             CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHH
Q 047571          511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAY  590 (681)
Q Consensus       511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~  590 (681)
                      +++...+ .+...+...++.+.|...+....+......+                            .+...|..+...|
T Consensus       175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~~~~la~~~  225 (275)
T 1xnf_A          175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAE----------------------------HLSETNFYLGKYY  225 (275)
T ss_dssp             CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH----------------------------HHHHHHHHHHHHH
T ss_pred             CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccc----------------------------cccHHHHHHHHHH
Confidence            3333333 3555556666667777776665442110000                            0123677788888


Q ss_pred             HcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIF  638 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  638 (681)
                      ...|++++|...|++..+.  .| +...+   ..++...|++++|++.+
T Consensus       226 ~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          226 LSLGDLDSATALFKLAVAN--NVHNFVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHTT--CCTTCHHH---HHHHHHHHHHHHC----
T ss_pred             HHcCCHHHHHHHHHHHHhC--CchhHHHH---HHHHHHHHHHHhhHHHH
Confidence            8888999999999888875  34 33333   45667778888888776

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.39  E-value=1.5e-11  Score=121.17  Aligned_cols=221  Identities=10%  Similarity=0.024  Sum_probs=151.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCC-hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGR-LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ  526 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  526 (681)
                      |..+...+.+.|++++|++.++++.+  | +...|+.+..++...|+ +++|+..|++..+.. +-+...|..+..++..
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence            34444445555555555555555443  2 33445555555555564 666666666665542 2244455555556666


Q ss_pred             ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHc-CCChHHH---
Q 047571          527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGY-NDLCQEA---  599 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~-~~~~~~a---  599 (681)
                      .|++++|...++++++.+ +-+...|..+..++...|++++|...++++..  | +...|+.+..++.. .|..++|   
T Consensus       179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~  257 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE  257 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence            666666666666666543 23466777777888888888888888887766  3 47789999999998 6666888   


Q ss_pred             --HHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC---------C
Q 047571          600 --LSLFDKMRNGGFTPNHFTFKVLLSICNQAG--FADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG---------R  666 (681)
Q Consensus       600 --~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~  666 (681)
                        ++.+++.++.. +-+...|..+...+...|  ++++|++.++++ +  ....+...+..++++|.+.|         .
T Consensus       258 ~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~  333 (382)
T 2h6f_A          258 REVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDI  333 (382)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence              58899998853 337889999999999988  689999999887 3  22334788999999999874         3


Q ss_pred             HHHHHHHHHhc
Q 047571          667 IEEAHRFREMS  677 (681)
Q Consensus       667 ~~~A~~~~~~~  677 (681)
                      +++|+++++++
T Consensus       334 ~~~A~~~~~~l  344 (382)
T 2h6f_A          334 LNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            59999999987

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.38  E-value=4.9e-12  Score=124.09  Aligned_cols=269  Identities=11%  Similarity=-0.028  Sum_probs=161.9

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHh----CCC-CChhHH
Q 047571          381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPD----VVTVATVIPVCSQLKALNHGKEIHAYAVKN----QFL-PNVSII  451 (681)
Q Consensus       381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~  451 (681)
                      +......+...|++++|...+++..+.... +    ...+..+...+...|+++.|...++...+.    +.. ....++
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            444556677778888888888877765311 2    245556666677777777777777665432    111 113344


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCC-------------hhHHHHHHHHhHhCC
Q 047571          452 TSLMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGR-------------LDDALGVFRSMQLSK  509 (681)
Q Consensus       452 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~-------------~~~A~~~~~~m~~~g  509 (681)
                      ..+...|...|++++|...+++..+     ++    ..++..+...+...|+             .+++.+.        
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------  158 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA--------  158 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH--------
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH--------
Confidence            4555555556666666555554432     11    1134444444444444             0000000        


Q ss_pred             CCCCHHHHHHHHHHhccccchHHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC
Q 047571          510 HRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKK----DF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG  579 (681)
Q Consensus       510 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~  579 (681)
                                          ++.|...+++..+.    +. ......+..+...|...|++++|...+++...     ++
T Consensus       159 --------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          159 --------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             --------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence                                44444444433321    10 11133556666777777777777777766554     11


Q ss_pred             ----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---CC
Q 047571          580 ----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGY---KI  647 (681)
Q Consensus       580 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~  647 (681)
                          ..++..+...+...|++++|...+++..+.    +..+ ...++..+...+...|++++|.+++++..+..   +.
T Consensus       219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence                236777888888899999999988887653    1111 15677888889999999999999998875531   11


Q ss_pred             CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          648 EA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       648 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .+ ....+..+..+|.+.|++++|.+.+++..
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            11 14578888999999999999999988754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.38  E-value=4.5e-11  Score=109.49  Aligned_cols=194  Identities=12%  Similarity=-0.027  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY  559 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  559 (681)
                      ..+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            345555666666666666666666665542 2334555566666666666666666666666543 22455566666666


Q ss_pred             Hhc-CCHHHHHHHhhhCCC----CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 047571          560 GMC-GFLECAKLVFDAVPV----KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADE  633 (681)
Q Consensus       560 ~~~-g~~~~a~~~~~~~~~----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~  633 (681)
                      ... |++++|...++++..    |+ ...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence            666 666666666665543    11 3455566666666666666666666666532 2345566666666666666666


Q ss_pred             HHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          634 ACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       634 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      |.++++.+.+. ....+...+..+...+...|+.++|..+++.+
T Consensus       166 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          166 ADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            66666665543 11123445555556666666666666665554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.37  E-value=1.1e-11  Score=125.29  Aligned_cols=295  Identities=12%  Similarity=0.007  Sum_probs=214.7

Q ss_pred             CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CcCC
Q 047571          343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-N----EILWTALMSGYVSNGRLEQALRSIAWMQQE----GFRP  411 (681)
Q Consensus       343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p  411 (681)
                      .......+......+...|++++|...|++..+  + +    ..+|..+...+...|++++|...+++....    +-.|
T Consensus         5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            344555667788889999999999999988654  2 3    356888889999999999999999987543    2222


Q ss_pred             -CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC-C----ChhHHHHHHHHHHhcCC--------------------hH
Q 047571          412 -DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL-P----NVSIITSLMIMYSKCGV--------------------LD  465 (681)
Q Consensus       412 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~  465 (681)
                       ....+..+...+...|++++|...++...+.... +    ...++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             2445667777888999999999999987753211 1    14477788888999999                    88


Q ss_pred             HHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC----HHHHHHHHHHhccccchH
Q 047571          466 YSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPD----SVAMARMLSVSGQLKALK  531 (681)
Q Consensus       466 ~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~  531 (681)
                      +|...+++...     .+    ..++..+...|...|++++|+..+++..+... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            88888876542     11    24677888889999999999999998875321 122    226777888889999999


Q ss_pred             HHHHHHHHHHHcCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChH
Q 047571          532 LGKEIHGQVLKKDF----AS-VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQ  597 (681)
Q Consensus       532 ~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~  597 (681)
                      +|...+++..+...    .+ ...++..+...|...|++++|...+++...     .+    ..++..+...|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99999998775311    11 155778889999999999999999987765     22    457788888999999999


Q ss_pred             HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 047571          598 EALSLFDKMRNG----GFTP-NHFTFKVLLSICNQAGFADEACRI  637 (681)
Q Consensus       598 ~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~  637 (681)
                      +|.+.+++..+.    |..+ ...++..+...+...|+...+..-
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  369 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNS  369 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHH
Confidence            999999987653    2122 234566666666666665544433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=6.7e-11  Score=112.05  Aligned_cols=250  Identities=10%  Similarity=0.010  Sum_probs=167.5

Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCC--HHHHHHHHHHhhc
Q 047571          351 SSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPD--VVTVATVIPVCSQ  425 (681)
Q Consensus       351 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~  425 (681)
                      ......+...|++++|...|+...+.   +...+..+...+...|++++|+..+++..+.+..|+  ...|..+...+..
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            45667777888888888888876542   455788888888889999999999888887432222  2236777788888


Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHH
Q 047571          426 LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVF  502 (681)
Q Consensus       426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~  502 (681)
                      .|++++|...++...+.. +.+..++..+...|...|++++|...+++..+  | +...|..+...+...+++++|++.|
T Consensus        87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  165 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF  165 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999998888888765 44667788888888888889888888888876  2 3445666662444456888888888


Q ss_pred             HHhHhCCCCCCHHHHHHHHHHhccccc---hHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC
Q 047571          503 RSMQLSKHRPDSVAMARMLSVSGQLKA---LKLGKEIHGQVLKKD-FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK  578 (681)
Q Consensus       503 ~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  578 (681)
                      ++..+.. +.+...+..+..++...|+   .+.|...+++..+.. -.|+.. ...+                       
T Consensus       166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~-----------------------  220 (272)
T 3u4t_A          166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDEL-----------------------  220 (272)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHH-----------------------
T ss_pred             HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHH-----------------------
Confidence            8887753 2234555555566665565   666666666655421 011110 0000                       


Q ss_pred             ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571          579 GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA  628 (681)
Q Consensus       579 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  628 (681)
                       ..+|..+...|...|++++|.+.+++..+.. +-+...+..+.......
T Consensus       221 -~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          221 -IEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC------
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhhhccc
Confidence             1356777888888899999999999988853 33666666665544433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=7.9e-12  Score=116.20  Aligned_cols=192  Identities=14%  Similarity=0.104  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 047571          414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCI  490 (681)
Q Consensus       414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~  490 (681)
                      ..+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++.+   .+...+..+...+.
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            344444445555555666655555555432 23444555555555556666666655555442   23345555555555


Q ss_pred             hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 047571          491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKL  570 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  570 (681)
                      ..|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|..
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence            5566666666665555432 2334455555555555566666666555555442 2234455555555555666666655


Q ss_pred             HhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          571 VFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       571 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      .++++..   .+..+|..+...|...|++++|.+.++++.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            5555443   2244555555555556666666666665555

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.31  E-value=1.5e-11  Score=124.64  Aligned_cols=267  Identities=9%  Similarity=0.004  Sum_probs=184.2

Q ss_pred             chHHhHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hhHHHHHHHHHhCCChHHHHHHHHHHHHc----C-cCCCHH
Q 047571          347 LFVRSSLVDMYCKCRDMNSAWRVFYETEE--R-NE----ILWTALMSGYVSNGRLEQALRSIAWMQQE----G-FRPDVV  414 (681)
Q Consensus       347 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g-~~p~~~  414 (681)
                      ...+..+...+...|++++|...|++..+  + +.    .+|..+...+...|++++|+..+++..+.    + ......
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            44555677888999999999999988764  2 32    47888999999999999999999987653    1 122345


Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcCC-----------------hHHHHHHHh
Q 047571          415 TVATVIPVCSQLKALNHGKEIHAYAVKNQ-----FLPNVSIITSLMIMYSKCGV-----------------LDYSLKLFD  472 (681)
Q Consensus       415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~  472 (681)
                      .+..+...+...|++++|...++.+.+..     ......++..+...|...|+                 +++|.+.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            67777888999999999999999877641     12234577888889999999                 888888877


Q ss_pred             hCCC-----C----CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571          473 EMEV-----R----NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLK  542 (681)
Q Consensus       473 ~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  542 (681)
                      +..+     .    ....+..+...|...|++++|+..+++..+.... ++..                           
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------  260 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------  260 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---------------------------
Confidence            6542     1    1235666677777777777777777776542100 1100                           


Q ss_pred             cCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C---C----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----
Q 047571          543 KDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K---G----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----  609 (681)
Q Consensus       543 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----  609 (681)
                          .....+..+..+|...|++++|...+++...  +   +    ..++..+...|...|++++|...+++..+.    
T Consensus       261 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          261 ----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             ----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence                0012344445555555555555555544433  1   1    346777888888888999988888887653    


Q ss_pred             CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          610 GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       610 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +..+ ...++..+...|...|++++|.+++++..+.
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            1111 2457788888999999999999999887653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.31  E-value=2.9e-08  Score=104.51  Aligned_cols=227  Identities=9%  Similarity=-0.055  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 047571          396 QALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGK-EIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEM  474 (681)
Q Consensus       396 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  474 (681)
                      .+..+|++.... ++-+...|.....-+...|+.+.|. .+++..... ++.+...+-.++....+.|++++|.++|+.+
T Consensus       327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            455667777665 3335566666666667778888886 999988864 3556666777888888899999999988877


Q ss_pred             CC-------------CC------------cchHHHHHHHHHhcCChhHHHHHHHHhHhC-C-CCCCHHHHHHHHHHhccc
Q 047571          475 EV-------------RN------------VISWTAMIDSCIENGRLDDALGVFRSMQLS-K-HRPDSVAMARMLSVSGQL  527 (681)
Q Consensus       475 ~~-------------~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~  527 (681)
                      ..             |+            ...|...+....+.|+.+.|..+|.+..+. + ..+........+.-. ..
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-IS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hC
Confidence            53             21            125677777777888899999999998875 2 122222222223322 23


Q ss_pred             cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHH
Q 047571          528 KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALS  601 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~  601 (681)
                      ++.+.|..+|+..++. .+.++..+...++.....|+.+.|..+|+....  ++    ...|...+..-...|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5588999999988876 344667777888888888999999999998776  32    3568888887788899999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571          602 LFDKMRNGGFTPNHFTFKVLLSICNQA  628 (681)
Q Consensus       602 ~~~~m~~~g~~p~~~~~~~l~~~~~~~  628 (681)
                      +.+++.+.  .|+......+++-|.-.
T Consensus       563 v~~R~~~~--~P~~~~~~~f~~ry~~~  587 (679)
T 4e6h_A          563 LEKRFFEK--FPEVNKLEEFTNKYKVL  587 (679)
T ss_dssp             HHHHHHHH--STTCCHHHHHHHHTCBT
T ss_pred             HHHHHHHh--CCCCcHHHHHHHHhcCC
Confidence            99999885  44434444444444333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.28  E-value=5.9e-11  Score=116.31  Aligned_cols=265  Identities=12%  Similarity=0.036  Sum_probs=181.7

Q ss_pred             HHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CcCC-CHHHH
Q 047571          349 VRSSLVDMYCKCRDMNSAWRVFYETEE--R-N----EILWTALMSGYVSNGRLEQALRSIAWMQQE----GFRP-DVVTV  416 (681)
Q Consensus       349 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~  416 (681)
                      .+......+...|++++|...|++..+  + +    ...+..+...+...|++++|...+++..+.    +..| ....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            345567788899999999999988754  2 3    357888999999999999999999987543    2122 24566


Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 047571          417 ATVIPVCSQLKALNHGKEIHAYAVKNQFL-PN----VSIITSLMIMYSKCGV--------------------LDYSLKLF  471 (681)
Q Consensus       417 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~  471 (681)
                      ..+...+...|++++|...++...+.... ++    ..++..+...+...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            77788899999999999999987763211 12    3477788888989999                    88888777


Q ss_pred             hhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571          472 DEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPDSVAMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       472 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                      ++...     .+    ...+..+...+...|++++|.+.+++..+... .++..                          
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------------------------  220 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------------  220 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH--------------------------
Confidence            66532     11    23455666666677777777777766543210 00000                          


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC---
Q 047571          542 KKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG---  609 (681)
Q Consensus       542 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---  609 (681)
                           .....+..+...|...|++++|...+++...     .+    ..++..+...+...|++++|...+++..+.   
T Consensus       221 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          221 -----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                 0122444455555556666666655554433     11    346777888888999999999998887653   


Q ss_pred             -CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          610 -GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       610 -g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                       +-.+ ...++..+...+.+.|++++|.+++++..+.
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence             1111 2457788899999999999999999988653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.27  E-value=9.4e-10  Score=106.05  Aligned_cols=211  Identities=10%  Similarity=0.034  Sum_probs=153.9

Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-CcchHHHHHHHHHh
Q 047571          430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYS-------KCGVL-------DYSLKLFDEMEV---R-NVISWTAMIDSCIE  491 (681)
Q Consensus       430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~  491 (681)
                      ++|..+|+.+.... +.+...|..++..+.       +.|++       ++|..+|++..+   | +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57778888888764 556677777777665       34775       888888887654   3 34478888888888


Q ss_pred             cCChhHHHHHHHHhHhCCCCCC-HH-HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCCHHHH
Q 047571          492 NGRLDDALGVFRSMQLSKHRPD-SV-AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG-MCGFLECA  568 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a  568 (681)
                      .|++++|..+|++..+.  .|+ .. .|..+...+.+.|+++.|..+|++.++... .+...|...+.... ..|+.++|
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence            89999999999888874  443 22 677777888888888888888888887542 23444444333322 35888888


Q ss_pred             HHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          569 KLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTP--NHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       569 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      ..+|+++..  | +...|..++..+.+.|++++|..+|++..+.. ++|  +...|..++....+.|+.++|..+++++.
T Consensus       189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888887765  3 36677788888888888888888888888753 354  35677777888888888888888888877


Q ss_pred             hc
Q 047571          643 RG  644 (681)
Q Consensus       643 ~~  644 (681)
                      +.
T Consensus       269 ~~  270 (308)
T 2ond_A          269 TA  270 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.27  E-value=7.7e-08  Score=101.32  Aligned_cols=64  Identities=6%  Similarity=-0.084  Sum_probs=32.8

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCC---hhHHHHhhhhcC
Q 047571          105 VNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGS---FEDAEKVFDESS  169 (681)
Q Consensus       105 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~  169 (681)
                      -|..+|..++..+.+.+.+..+..+|+.+...- +.....|...+..-.+.|.   ++.+.++|+...
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal  130 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL  130 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence            355555555555555555555555555555442 3444444444554445555   555555555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.24  E-value=8e-11  Score=120.77  Aligned_cols=206  Identities=9%  Similarity=-0.058  Sum_probs=134.5

Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHH
Q 047571          429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVL-DYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRS  504 (681)
Q Consensus       429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~  504 (681)
                      ++.+...++...... +.+...+..+...|...|++ ++|++.|++..+  | +...|..+..+|...|++++|++.|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555666666544332 34667777788888888888 888888887754  3 456788888888888888888888888


Q ss_pred             hHhCCCCCCHHHHHHHHHHhccc---------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--------CCHHH
Q 047571          505 MQLSKHRPDSVAMARMLSVSGQL---------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC--------GFLEC  567 (681)
Q Consensus       505 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~  567 (681)
                      ..+.  .|+...+..+..++...         |++++|...+++..+.. +.+...+..+..+|...        |++++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            8875  46667777777777777         88888888888777754 22455666666666665        55666


Q ss_pred             HHHHhhhCCC--C----ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571          568 AKLVFDAVPV--K----GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFN  639 (681)
Q Consensus       568 a~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  639 (681)
                      |...|+++..  |    +...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...|++++|++.+.
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6666655444  3    34455555566666666666666666655532 2244555555555555565555555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.24  E-value=4.5e-10  Score=112.28  Aligned_cols=220  Identities=10%  Similarity=-0.108  Sum_probs=152.6

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CC-----CHHHHH
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RP-----DSVAMA  518 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p-----~~~~~~  518 (681)
                      ....+...|++++|...+++..+     ++    ..+|..+...|...|++++|+..+++..+.-- .+     ...++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            44556677888888877776643     22    24667777778888888888887777654211 11     123566


Q ss_pred             HHHHHhccccchHHHHHHHHHHHHcCCC-C----ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHH
Q 047571          519 RMLSVSGQLKALKLGKEIHGQVLKKDFA-S----VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWT  584 (681)
Q Consensus       519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~  584 (681)
                      .+..+|...|++++|...+++..+.... .    ...++..+..+|...|++++|...+++...     .+    ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            6677777888888888888776643111 1    134677788888888888888888876655     22    44678


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHhccCC---HHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 047571          585 AIIEAYGYNDLCQEALSLFDKMRNGGF---TP-NHFTFKVLLSICNQAGF---ADEACRIFNVMSRGYKIEAL-EEHYLI  656 (681)
Q Consensus       585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~  656 (681)
                      .+...|...|++++|...+++..+..-   .| ....+..+...+...|+   .++|+.+++..    +..|+ ...+..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~  344 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAID  344 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHH
Confidence            888889999999999999988765310   12 23345677888888898   77777777654    33333 567888


Q ss_pred             HHHHHhhcCCHHHHHHHHHhc
Q 047571          657 MIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       657 l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +..+|.+.|++++|.+.+++.
T Consensus       345 la~~y~~~g~~~~A~~~~~~a  365 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKV  365 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.23  E-value=4.6e-09  Score=104.91  Aligned_cols=223  Identities=8%  Similarity=-0.069  Sum_probs=122.4

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHc----CcCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC-C-----ChhHHH
Q 047571          384 LMSGYVSNGRLEQALRSIAWMQQE----GFRP-DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL-P-----NVSIIT  452 (681)
Q Consensus       384 li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~  452 (681)
                      ....+...|++++|+..+++..+.    +-.+ ...++..+...+...|+++.|...+....+.-.. +     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344556667777777777766543    1111 2234555555666666666666666665542111 1     123455


Q ss_pred             HHHHHHHhcCChHHHHHHHhhCCC-----CCc----chHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCHHHHHH
Q 047571          453 SLMIMYSKCGVLDYSLKLFDEMEV-----RNV----ISWTAMIDSCIENGRLDDALGVFRSMQLS----KHRPDSVAMAR  519 (681)
Q Consensus       453 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~  519 (681)
                      .+...|...|++++|...+++..+     ++.    .++..+...|...|++++|++.+++..+.    +..|       
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-------  261 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-------  261 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch-------
Confidence            555566666666666666555432     111    24555555566666666666665555441    1111       


Q ss_pred             HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC---hhhHHHHHHHHH
Q 047571          520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG---SITWTAIIEAYG  591 (681)
Q Consensus       520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~~~~~l~~~~~  591 (681)
                                                 ....++..+..+|.+.|++++|...+++...     .+   ...+..+...+.
T Consensus       262 ---------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~  314 (383)
T 3ulq_A          262 ---------------------------SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL  314 (383)
T ss_dssp             ---------------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             ---------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence                                       1133344444444445555554444444332     11   123455667777


Q ss_pred             cCCC---hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          592 YNDL---CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       592 ~~~~---~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..|+   +++|+.++++.   +..| ....+..+...|...|++++|.+++++..+
T Consensus       315 ~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          315 SGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             SSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777   66777776665   2233 345677788888888888888888887754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.23  E-value=5.8e-10  Score=98.37  Aligned_cols=163  Identities=10%  Similarity=0.009  Sum_probs=107.7

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571          478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK  557 (681)
Q Consensus       478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  557 (681)
                      +...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|+++.|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            45577888888888888888888888887753 3345566777777777777777777777776654 223555555666


Q ss_pred             HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571          558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      .+...++++.|...+.+...   .+...+..+...|...|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence            66666666666666665544   234556666666666666666666666666642 33556666666666666666666


Q ss_pred             HHHHHHhhh
Q 047571          635 CRIFNVMSR  643 (681)
Q Consensus       635 ~~~~~~~~~  643 (681)
                      ++.|++..+
T Consensus       161 ~~~~~~al~  169 (184)
T 3vtx_A          161 VKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666665544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.23  E-value=6.2e-10  Score=98.15  Aligned_cols=159  Identities=14%  Similarity=0.005  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHH
Q 047571          514 SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAY  590 (681)
Q Consensus       514 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~  590 (681)
                      ...|..+...+...|++++|...|++.++.+ +-++..+..+..+|.+.|++++|...+.....   .+...+..+...+
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            3445555555666666666666666655543 22355555566666666666666666555444   2244455555555


Q ss_pred             HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHH
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEE  669 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  669 (681)
                      ...++++.|...+++..+.. +.+...+..+..++.+.|++++|++.|++..+.   .| +...|..++.+|.+.|++++
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHH
Confidence            55666666666666655532 234555555666666666666666666655542   22 24555566666666666666


Q ss_pred             HHHHHHhc
Q 047571          670 AHRFREMS  677 (681)
Q Consensus       670 A~~~~~~~  677 (681)
                      |++.+++.
T Consensus       160 A~~~~~~a  167 (184)
T 3vtx_A          160 AVKYFKKA  167 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.23  E-value=1.6e-10  Score=118.51  Aligned_cols=188  Identities=10%  Similarity=-0.058  Sum_probs=88.8

Q ss_pred             chHHHHHHHHHhcCCh-hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          480 ISWTAMIDSCIENGRL-DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      ..+..+..++...|++ ++|++.|++..+.. +-+...+..+..++...|++++|...++..++..  |+...+..+..+
T Consensus       103 ~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~  179 (474)
T 4abn_A          103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMV  179 (474)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence            3444444445555555 55555555554432 2223444445555555555555555555554432  333444455555


Q ss_pred             HHhc---------CCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcC--------CChHHHHHHHHHHHhCCCC---CCH
Q 047571          559 YGMC---------GFLECAKLVFDAVPV--K-GSITWTAIIEAYGYN--------DLCQEALSLFDKMRNGGFT---PNH  615 (681)
Q Consensus       559 ~~~~---------g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~---p~~  615 (681)
                      |...         |++++|...++++..  | +...|..+..+|...        |++++|++.|++..+.. +   -+.
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  258 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNP  258 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCH
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCH
Confidence            5555         555555555554433  2 234444444444444        44555555555554431 1   244


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHH
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFR  674 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~  674 (681)
                      ..|..+..+|...|++++|.+.|++..+.   .| +...+..+..++...|+.++|.+.+
T Consensus       259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          259 DLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555555555555555555544432   12 2334444555555555555554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.21  E-value=3.4e-09  Score=102.14  Aligned_cols=212  Identities=8%  Similarity=-0.000  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHHHcCcCCCHHHHHHHHHHhh-------ccCCh-------hHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 047571          395 EQALRSIAWMQQEGFRPDVVTVATVIPVCS-------QLKAL-------NHGKEIHAYAVKNQFLPNVSIITSLMIMYSK  460 (681)
Q Consensus       395 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  460 (681)
                      ++|..+|++..... +-+...|..+...+.       +.|+.       ++|..+|+...+.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            78889999988752 335556666666654       35776       8999999998874224456688999999999


Q ss_pred             cCChHHHHHHHhhCCC--CC-cc-hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHh-ccccchHHHHH
Q 047571          461 CGVLDYSLKLFDEMEV--RN-VI-SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVS-GQLKALKLGKE  535 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~  535 (681)
                      .|++++|.++|+++.+  |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.+.|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999998876  43 33 78899999999999999999999999864 33444444333332 23699999999


Q ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----C--ChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----K--GSITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +|+..++.. +.++..+..++..+.+.|++++|..+|+++..     |  ....|..++..+...|+.++|..+++++.+
T Consensus       191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999998864 33688899999999999999999999998765     1  245788889999999999999999999988


Q ss_pred             C
Q 047571          609 G  609 (681)
Q Consensus       609 ~  609 (681)
                      .
T Consensus       270 ~  270 (308)
T 2ond_A          270 A  270 (308)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=2.9e-10  Score=109.98  Aligned_cols=229  Identities=11%  Similarity=0.083  Sum_probs=145.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--------C---CcchHHHHHHHHHhcCChhHHHHHHHHhHhC------C
Q 047571          447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--------R---NVISWTAMIDSCIENGRLDDALGVFRSMQLS------K  509 (681)
Q Consensus       447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g  509 (681)
                      ...++..+...+...|++++|..+++++.+        .   ....+..+...|...|++++|+..+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            456677888888889999999988887754        1   2246777788888889999999988888764      2


Q ss_pred             CCC-CHHHHHHHHHHhccccchHHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC---
Q 047571          510 HRP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKK------DFAS-VPFVAAENIKMYGMCGFLECAKLVFDAVPVK---  578 (681)
Q Consensus       510 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---  578 (681)
                      -.| ...++..+...+...|++++|...++++.+.      +..+ ....+..+...|...|++++|...++++...   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            122 2446677777888888888888888877753      2112 2455666777777777777777777655431   


Q ss_pred             -----C---hhhHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHhccCCHHHHHH
Q 047571          579 -----G---SITWTAIIEAYGYNDLCQEALSLFDKMRNG-------GFTPN-------HFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       579 -----~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~-------~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                           +   ..++..+...|...|++++|.+.++++.+.       ...+.       ...+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence                 1   345666777777777777777777777652       11111       1112222223333344444444


Q ss_pred             HHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          637 IFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       637 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .++....   ..| ....+..++.+|.+.|++++|.+++++..
T Consensus       266 ~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  305 (311)
T 3nf1_A          266 WYKACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM  305 (311)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHhhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5544432   233 36789999999999999999999998753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=2e-10  Score=111.09  Aligned_cols=240  Identities=11%  Similarity=0.067  Sum_probs=131.9

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh------CC-
Q 047571          379 ILWTALMSGYVSNGRLEQALRSIAWMQQE-------GFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKN------QF-  444 (681)
Q Consensus       379 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-  444 (681)
                      .++..+...+...|++++|...++++.+.       ........+..+...+...|++++|...++.+...      +- 
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            45666677777777777777777776652       12223455666667777778888888877776653      11 


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHhHhC-----
Q 047571          445 LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV-------R----NVISWTAMIDSCIENGRLDDALGVFRSMQLS-----  508 (681)
Q Consensus       445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----  508 (681)
                      +....++..+...|...|++++|...++++.+       +    ....+..+...+...|++++|++.++++.+.     
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            22345566677777777888777777766542       1    1234555666666777777777777666543     


Q ss_pred             -CCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHcC-------CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 047571          509 -KHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKD-------FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG  579 (681)
Q Consensus       509 -g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  579 (681)
                       +..|. ..++..+...+...|++++|...++++.+..       ..+.......                        .
T Consensus       188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------~  243 (311)
T 3nf1_A          188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------H  243 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------H
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------H
Confidence             11121 2234444455555555555555555544310       0000000000                        0


Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ...+..+...+...+.+.++...+++..... +.+..++..+..+|.+.|++++|.+++++..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          244 AEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1122333344445666677777777776532 33567788899999999999999999987754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.12  E-value=9.3e-09  Score=102.30  Aligned_cols=264  Identities=12%  Similarity=-0.019  Sum_probs=180.6

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH----HHHHHHHHhhccCChhHHHHHHHHHHHhCCC-CC----hhHH
Q 047571          381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV----TVATVIPVCSQLKALNHGKEIHAYAVKNQFL-PN----VSII  451 (681)
Q Consensus       381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~  451 (681)
                      .......+...|++++|...+++........+..    .+..+...+...|+++.|...+++....... .+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4445556778999999999999987754222222    3455556778889999999999887753211 11    2235


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhCCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC--C--CHHH
Q 047571          452 TSLMIMYSKCGVLDYSLKLFDEMEV-------R----NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR--P--DSVA  516 (681)
Q Consensus       452 ~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~  516 (681)
                      ..+...+...|++++|...+++...       +    ....+..+...+...|++++|...+++.....-.  +  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            5677788889999999988877643       1    1234566777888999999999999888764321  1  2345


Q ss_pred             HHHHHHHhccccchHHHHHHHHHHHHcCCCCC--hhHHH----HHHHHHHhcCCHHHHHHHhhhCCCCC-------hhhH
Q 047571          517 MARMLSVSGQLKALKLGKEIHGQVLKKDFASV--PFVAA----ENIKMYGMCGFLECAKLVFDAVPVKG-------SITW  583 (681)
Q Consensus       517 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~  583 (681)
                      +..+...+...|++++|...+++..+....+.  .....    ..+..+...|++++|...+++...++       ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            66777778888999999999988775421211  11111    23344778899999998888877632       1245


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          584 TAIIEAYGYNDLCQEALSLFDKMRNG----GFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       584 ~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..+...+...|++++|...+++..+.    |..++. ..+..+..++...|+.++|.+.+++....
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            66777888888999988888877542    222222 35666777888888888998888877764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.12  E-value=3.2e-08  Score=98.38  Aligned_cols=286  Identities=11%  Similarity=-0.016  Sum_probs=196.8

Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcC-CCH----HHHH
Q 047571          351 SSLVDMYCKCRDMNSAWRVFYETEE----RNE----ILWTALMSGYVSNGRLEQALRSIAWMQQEGFR-PDV----VTVA  417 (681)
Q Consensus       351 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~----~~~~  417 (681)
                      ......+...|++++|...+++...    .+.    .+++.+...+...|++++|...+++....... .+.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3445566788999999999876432    122    25667778888999999999999987653211 122    2345


Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHh----CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C------CcchH
Q 047571          418 TVIPVCSQLKALNHGKEIHAYAVKN----QFL--P-NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R------NVISW  482 (681)
Q Consensus       418 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~  482 (681)
                      .+...+...|++++|...++...+.    +..  | ....+..+...+...|++++|...+++...  +      ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            5666788899999999999987753    222  2 234566678889999999999999987642  1      12357


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--HHHHH----HHHHHhccccchHHHHHHHHHHHHcCCCCC---hhHHH
Q 047571          483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPD--SVAMA----RMLSVSGQLKALKLGKEIHGQVLKKDFASV---PFVAA  553 (681)
Q Consensus       483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~  553 (681)
                      ..+...+...|++++|...+++.....-.++  .....    .....+...|+.+.|...++...+....+.   ...+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7788889999999999999998875421211  12111    233446788999999999988876432221   22456


Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC----C----Ch-hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV----K----GS-ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI  624 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~----~----~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  624 (681)
                      .+...+...|++++|...+++...    .    +. ..+..+..++...|+.++|...+++.....  +.    ...+..
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~  331 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH  331 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence            778889999999999999987654    1    11 256667778888999999999999988742  11    112234


Q ss_pred             HhccCCHHHHHHHHHHhhhc
Q 047571          625 CNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +...|  +....+++.+...
T Consensus       332 ~~~~g--~~~~~ll~~~~~~  349 (373)
T 1hz4_A          332 FVIEG--EAMAQQLRQLIQL  349 (373)
T ss_dssp             HHTTH--HHHHHHHHHHHHT
T ss_pred             HHHcc--HHHHHHHHHHHhC
Confidence            44555  5666677766553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.09  E-value=2.4e-09  Score=106.70  Aligned_cols=192  Identities=8%  Similarity=-0.046  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCC----C-CC-CHHHHHHHHHHhccccchHHHHHHHHHHHHc----CCC-CChh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSK----H-RP-DSVAMARMLSVSGQLKALKLGKEIHGQVLKK----DFA-SVPF  550 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g----~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~  550 (681)
                      +..+...|...|++++|+..+++..+..    - .+ ...++..+..+|...|++++|...+.+..+.    +.. ....
T Consensus       144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  223 (378)
T 3q15_A          144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI  223 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3444444444455555544444443210    0 00 1223444444455555555555555444431    100 1133


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC-------CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC---CC-CHHHH
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV-------KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGF---TP-NHFTF  618 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~  618 (681)
                      ++..+..+|...|++++|...+++...       |. ..++..+...+...|++++|...+++..+..-   .| ....+
T Consensus       224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  303 (378)
T 3q15_A          224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF  303 (378)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            455566666666666666666665543       11 44567777788888888888888888775321   12 23445


Q ss_pred             HHHHHHHhccCC---HHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          619 KVLLSICNQAGF---ADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       619 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ..+...+...|+   +.+|+.+++..    +..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus       304 ~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          304 LFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            666666777777   67777777642    23333 456777888888888888888887764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.09  E-value=4.1e-09  Score=92.85  Aligned_cols=161  Identities=12%  Similarity=0.007  Sum_probs=92.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhc
Q 047571          449 SIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG  525 (681)
Q Consensus       449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  525 (681)
                      ..+..+...+...|++++|...++++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3455556666667777777777766654   234455666666666666666666666665532 222333333333333


Q ss_pred             cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHH
Q 047571          526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDK  605 (681)
Q Consensus       526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  605 (681)
                      ..|++++|...++.+.+...                                .+...+..+...+...|++++|.+.+++
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANP--------------------------------INFNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT--------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCc--------------------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            33444444433333332210                                2234556666666677777777777777


Q ss_pred             HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          606 MRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       606 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +.+.. +.+...+..+...+...|++++|.+.++.+.+
T Consensus       136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66642 34566677777777777777777777776654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.07  E-value=2.7e-09  Score=94.00  Aligned_cols=162  Identities=16%  Similarity=0.021  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG  560 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  560 (681)
                      .|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...               
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------------   73 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP---------------   73 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------------
Confidence            45555666667777777777777665532 22344444444444555555555555544443210               


Q ss_pred             hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571          561 MCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV  640 (681)
Q Consensus       561 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  640 (681)
                                       .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++.
T Consensus        74 -----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           74 -----------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             -----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence                             234567778888889999999999999998863 55788899999999999999999999999


Q ss_pred             hhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          641 MSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       641 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +.+.  .+.+...+..++.++.+.|++++|.+++++..
T Consensus       136 ~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          136 ALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8875  23346889999999999999999999998753

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=7e-09  Score=98.93  Aligned_cols=162  Identities=9%  Similarity=-0.102  Sum_probs=95.8

Q ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHHhc-CCHHHHHHHhhhCCC--CC-------h
Q 047571          516 AMARMLSVSGQLKALKLGKEIHGQVLKKDF---AS--VPFVAAENIKMYGMC-GFLECAKLVFDAVPV--KG-------S  580 (681)
Q Consensus       516 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~--~~-------~  580 (681)
                      +|..+..+|...|++++|...+++.++...   .+  ...++..+..+|... |++++|...+++...  |+       .
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            344444444455555555555544443210   00  133556666677774 777777777766554  11       2


Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC----
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH------FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL----  650 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----  650 (681)
                      .+|+.+...+...|++++|+..|++..+.......      ..|..+..++...|++++|++.+++..+   +.|+    
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~  235 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C-------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCc
Confidence            35777788888888888888888888775322111      1566677778888888888888886654   2332    


Q ss_pred             --hhHHHHHHHHHh--hcCCHHHHHHHHHhccCC
Q 047571          651 --EEHYLIMIDILT--RFGRIEEAHRFREMSSSL  680 (681)
Q Consensus       651 --~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~  680 (681)
                        ...+..++.++.  ..+++++|++.++++..+
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence              112344555553  456788888888776554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.06  E-value=1.6e-08  Score=100.74  Aligned_cols=298  Identities=10%  Similarity=-0.023  Sum_probs=207.2

Q ss_pred             CCCCchHHhHHHHHH--HhcCCHHHHHHHHhhcCC------C--ChhhHHHHHHH--HHhCCChHHHH---------HHH
Q 047571          343 YSEELFVRSSLVDMY--CKCRDMNSAWRVFYETEE------R--NEILWTALMSG--YVSNGRLEQAL---------RSI  401 (681)
Q Consensus       343 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~--~~~~~~~~~A~---------~~~  401 (681)
                      ..|...+-+.+-+.|  .+.+++++|..+++++..      .  ++..|-.++..  ....+....+.         ..+
T Consensus         6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l   85 (378)
T 3q15_A            6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL   85 (378)
T ss_dssp             CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence            445566666677777  789999999999887543      1  33344444432  11223333333         556


Q ss_pred             HHHHHcCcCCCH-H---HHHHHHHHhhccCChhHHHHHHHHHHHhCC-CC----ChhHHHHHHHHHHhcCChHHHHHHHh
Q 047571          402 AWMQQEGFRPDV-V---TVATVIPVCSQLKALNHGKEIHAYAVKNQF-LP----NVSIITSLMIMYSKCGVLDYSLKLFD  472 (681)
Q Consensus       402 ~~m~~~g~~p~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~  472 (681)
                      +.+.......+. .   .+......+...|++++|...++.+.+... .+    ...++..+...|...|+++.|...++
T Consensus        86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            665443211111 1   112233346788999999999999876421 12    24567788899999999999998888


Q ss_pred             hCCC-----CC-----cchHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHhccccchHHHHHHH
Q 047571          473 EMEV-----RN-----VISWTAMIDSCIENGRLDDALGVFRSMQLS----KHRP-DSVAMARMLSVSGQLKALKLGKEIH  537 (681)
Q Consensus       473 ~~~~-----~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~  537 (681)
                      +..+     ++     ..+++.+...|...|++++|++.+++..+.    +-.+ ...++..+..++...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7653     22     346788889999999999999999988753    1111 1236777888899999999999999


Q ss_pred             HHHHHc----CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC---hhhHHHHHHHHHcCCC---hHHHHHH
Q 047571          538 GQVLKK----DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG---SITWTAIIEAYGYNDL---CQEALSL  602 (681)
Q Consensus       538 ~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~---~~~a~~~  602 (681)
                      ++..+.    +.+....++..+..+|.+.|++++|...+++...     .+   ...++.+...+...++   +++|+..
T Consensus       246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            998861    2233377888999999999999999999987654     12   3345666677778888   7788887


Q ss_pred             HHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          603 FDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       603 ~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +++   .+..| ....+..+...|...|++++|.+.+++..+
T Consensus       326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            776   33334 345677889999999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.03  E-value=3.6e-09  Score=112.88  Aligned_cols=159  Identities=9%  Similarity=-0.037  Sum_probs=82.7

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          479 VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       479 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      ...|+.|...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+++.++.+ +-+...+..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3466777777777777777777777776642 2234455555556666666666666666555543 1124444444444


Q ss_pred             HHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047571          559 YGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       559 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      |...|++++|.+.|++..+  | +...|+.+..+|...|++++|++.|++..+.  .| +...+..+..++...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence            5555555555444444433  2 2334444444444444444444444444442  22 344444444444444444444


Q ss_pred             HHHHHHh
Q 047571          635 CRIFNVM  641 (681)
Q Consensus       635 ~~~~~~~  641 (681)
                      .+.++++
T Consensus       165 ~~~~~ka  171 (723)
T 4gyw_A          165 DERMKKL  171 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.00  E-value=4.9e-09  Score=111.81  Aligned_cols=160  Identities=8%  Similarity=0.052  Sum_probs=126.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571          447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV  523 (681)
Q Consensus       447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  523 (681)
                      +...++.|...|.+.|++++|++.|++..+  | +...|..+..+|.+.|++++|++.|++..+.. +-+...|..+..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            456788888888888888888888887764  3 45678888888888888888888888887753 3345678888888


Q ss_pred             hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHH
Q 047571          524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEAL  600 (681)
Q Consensus       524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~  600 (681)
                      +...|++++|.+.+++.++.+ +-+...+..+..+|...|++++|...|+++.+  |+ ...|..+...+...|++++|.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            888888888888888888764 23477788888888888888888888887766  43 667888888888888888888


Q ss_pred             HHHHHHHh
Q 047571          601 SLFDKMRN  608 (681)
Q Consensus       601 ~~~~~m~~  608 (681)
                      +.+++..+
T Consensus       166 ~~~~kal~  173 (723)
T 4gyw_A          166 ERMKKLVS  173 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888776

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.97  E-value=2.6e-08  Score=91.20  Aligned_cols=188  Identities=7%  Similarity=-0.075  Sum_probs=110.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHH
Q 047571          447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV----RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLS  522 (681)
Q Consensus       447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  522 (681)
                      ++..+......+.+.|++++|...|++..+    ++...+..+..++...|++++|++.+++..+.. +-+...+..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            445666667777777777777777776543    445555556777777777777777777777642 223345666666


Q ss_pred             HhccccchHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC---hhhHHHHHHHH
Q 047571          523 VSGQLKALKLGKEIHGQVLKKDFASVP-------FVAAENIKMYGMCGFLECAKLVFDAVPV--KG---SITWTAIIEAY  590 (681)
Q Consensus       523 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~  590 (681)
                      ++...|++++|...+++..+... .++       ..+..+...+...|++++|...++++..  |+   ...|..+...|
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            67777777777777777766532 123       3455556666666666666666666555  22   23444555555


Q ss_pred             HcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          591 GYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...     +..+++++...+ ..+...|....  ....+.+++|+..+++..+.
T Consensus       164 ~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          164 YNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence            332     233344444432 22333333222  23345567888888877653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=8.1e-09  Score=98.07  Aligned_cols=217  Identities=11%  Similarity=0.077  Sum_probs=137.3

Q ss_pred             hcCChHHHHHHHhhCC-------CCC----cchHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCC-CHHHHHHHH
Q 047571          460 KCGVLDYSLKLFDEME-------VRN----VISWTAMIDSCIENGRLDDALGVFRSMQLS------KHRP-DSVAMARML  521 (681)
Q Consensus       460 ~~g~~~~a~~~~~~~~-------~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll  521 (681)
                      ..|++++|+.++++..       .++    ..++..+...|...|++++|+..+++..+.      +-.| ...++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            3455555555554433       222    346778888899999999999999888764      2222 244677788


Q ss_pred             HHhccccchHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--------C---hhhH
Q 047571          522 SVSGQLKALKLGKEIHGQVLKK------DF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--------G---SITW  583 (681)
Q Consensus       522 ~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~  583 (681)
                      ..+...|++++|...+.+..+.      .. +.....+..+...|...|++++|...++++..-        +   ..++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            8888889999999888887754      11 223566777778888888888888877765431        1   3466


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHhhhcCCCCC
Q 047571          584 TAIIEAYGYNDLCQEALSLFDKMRNG-------GFTP-NHFTFKVLLSICNQAGF------ADEACRIFNVMSRGYKIEA  649 (681)
Q Consensus       584 ~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~  649 (681)
                      ..+...|...|++++|+..+++..+.       ...+ ....+..+.......+.      +..+...++...   ...|
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  249 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSP  249 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCH
Confidence            77777788888888888888877653       1122 22233333333333222      223333332111   1223


Q ss_pred             -ChhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          650 -LEEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       650 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                       ....+..++.+|.+.|++++|.+++++...
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             256788999999999999999999987643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.96  E-value=1.9e-08  Score=92.15  Aligned_cols=190  Identities=9%  Similarity=0.024  Sum_probs=139.5

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047571          477 RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENI  556 (681)
Q Consensus       477 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  556 (681)
                      .|+..+......+...|++++|+..|++..+..-.++...+..+..++...|++++|...++...+.+. .+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence            355677788888999999999999999998875447777777788888899999999999999887542 2577788888


Q ss_pred             HHHHhcCCHHHHHHHhhhCCC--CC-h-------hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 047571          557 KMYGMCGFLECAKLVFDAVPV--KG-S-------ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN---HFTFKVLLS  623 (681)
Q Consensus       557 ~~~~~~g~~~~a~~~~~~~~~--~~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~  623 (681)
                      .+|...|++++|...+++...  |+ .       ..|..+...+...|++++|++.|++..+.  .|+   ...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            889999999999998887766  43 3       45777778888889999999999988874  454   566777777


Q ss_pred             HHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          624 ICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       624 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ++...|     ..+++.+... + ..+...|....  ....|.+++|+..+++..
T Consensus       162 ~~~~~~-----~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~  207 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAV  207 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            776554     3344544442 1 11233343332  334566899999888754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.88  E-value=3.1e-08  Score=81.74  Aligned_cols=123  Identities=15%  Similarity=0.075  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA  628 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  628 (681)
                      +..+...+...|++++|..+++++..   .+...|..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence            34445555555666666655555433   234556666777777777777777777777653 44566777777777778


Q ss_pred             CCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          629 GFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       629 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      |++++|.++++.+.+.  .+.+...+..++.++.+.|++++|.+.++++
T Consensus        83 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           83 GDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            8888888887777653  1223566777777778888888887777765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.86  E-value=7e-08  Score=91.49  Aligned_cols=159  Identities=12%  Similarity=-0.012  Sum_probs=99.7

Q ss_pred             cCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh------CC-CCchhHHHHHHH
Q 047571           85 QNKLKEALVILDYMDQ-------QGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN------GL-ENNGFLRTKLVK  150 (681)
Q Consensus        85 ~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~  150 (681)
                      .|+++.|+..|++..+       .+.+....++..+...+...|++++|...+++..+.      +- +....++..+..
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            4555555555555433       333345678889999999999999999999998865      22 234567888889


Q ss_pred             HhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhH
Q 047571          151 MYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGL  230 (681)
Q Consensus       151 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  230 (681)
                      .|...|++++|.+.+++                          ++.++++......+....++..+...+...|++++|.
T Consensus        94 ~~~~~g~~~~A~~~~~~--------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKR--------------------------ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             HHHTTTCHHHHHHHHHH--------------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHH--------------------------HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999887763                          2333322211111223446777777888888888888


Q ss_pred             HHHHHHHHh------CCCC-CcHHHhHHHHHHHhcCChHHHHHHHh
Q 047571          231 KTHALLIKN------GFVD-YLILRTSLIDMYFKCGKIKLARRVFD  269 (681)
Q Consensus       231 ~~~~~~~~~------g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~  269 (681)
                      ..++...+.      +-.| ...++..+...|...|++++|...++
T Consensus       148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  193 (283)
T 3edt_B          148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK  193 (283)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            888777654      1011 12344444444445555555544444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.83  E-value=7.5e-08  Score=90.17  Aligned_cols=211  Identities=9%  Similarity=0.023  Sum_probs=135.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC-HHHH
Q 047571          446 PNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPD-SVAM  517 (681)
Q Consensus       446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~  517 (681)
                      .+...+-.+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            3455566677777888888888888888765  33    34566777788888888888888888877521 112 3345


Q ss_pred             HHHHHHhcc--------ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHH
Q 047571          518 ARMLSVSGQ--------LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEA  589 (681)
Q Consensus       518 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~  589 (681)
                      ..+..++..        .|++++|...++++++.... ++.....+.......+..              ...+..+...
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~--------------~~~~~~la~~  157 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKL--------------ARKQYEAARL  157 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence            555566666        77888888888877765322 122222211111100000              1124567788


Q ss_pred             HHcCCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhhhcCCCCCC-hhHHHH
Q 047571          590 YGYNDLCQEALSLFDKMRNGGFT-P-NHFTFKVLLSICNQA----------GFADEACRIFNVMSRGYKIEAL-EEHYLI  656 (681)
Q Consensus       590 ~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~  656 (681)
                      |...|++++|+..|+++.+.... + ....+..+..+|...          |++++|++.++.+.+...-.|. ......
T Consensus       158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  237 (261)
T 3qky_A          158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL  237 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            89999999999999999885311 1 245677888888766          8999999999998876332222 344555


Q ss_pred             HHHHHhhcCCHHHHH
Q 047571          657 MIDILTRFGRIEEAH  671 (681)
Q Consensus       657 l~~~~~~~g~~~~A~  671 (681)
                      +..++.+.|+++++.
T Consensus       238 l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          238 YTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHhhhhh
Confidence            666666666665543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.82  E-value=1.2e-07  Score=89.95  Aligned_cols=160  Identities=10%  Similarity=-0.061  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHH-HHHHHH
Q 047571          515 VAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTA-IIEAYG  591 (681)
Q Consensus       515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~  591 (681)
                      ..+..+...+...|++++|...++++.+.. +-++..+..+..+|...|++++|...++++..  |+...... ....+.
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            344445555556666666666666666543 22467788889999999999999999999887  55433322 233466


Q ss_pred             cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHH
Q 047571          592 YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAH  671 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  671 (681)
                      ..++.++|+..+++..+.. +.+...+..+...+...|++++|++.++++.+...-..+...+..++.+|...|+.++|.
T Consensus       197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            7788899999999998863 557889999999999999999999999999875222223678999999999999999998


Q ss_pred             HHHHh
Q 047571          672 RFREM  676 (681)
Q Consensus       672 ~~~~~  676 (681)
                      ..+++
T Consensus       276 ~~~r~  280 (287)
T 3qou_A          276 SXYRR  280 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.82  E-value=2.9e-07  Score=85.66  Aligned_cols=176  Identities=12%  Similarity=0.068  Sum_probs=95.1

Q ss_pred             HHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571          498 ALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVP  576 (681)
Q Consensus       498 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  576 (681)
                      |+..+++..+.+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++++|.+.|+.+.|.+.++++.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444444333 33333333444444445555555555554443332 1234555556666666666666666666654


Q ss_pred             C--C-----ChhhHHHHHHH--HH--cCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC
Q 047571          577 V--K-----GSITWTAIIEA--YG--YNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY  645 (681)
Q Consensus       577 ~--~-----~~~~~~~l~~~--~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  645 (681)
                      .  |     +..+...|+.+  ..  ..+++++|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4  3     12233333333  22  234788888888887664  4553333444447778888888888887665431


Q ss_pred             C---C----CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          646 K---I----EA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       646 ~---~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .   .    .| ++.++..+|.+....|+  +|.++++++.
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~  280 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV  280 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence            0   0    13 35566555556655676  6777776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.81  E-value=5.5e-08  Score=104.44  Aligned_cols=182  Identities=10%  Similarity=-0.061  Sum_probs=126.8

Q ss_pred             HhcCChhHHHHHHHHhH--------hCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          490 IENGRLDDALGVFRSMQ--------LSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       490 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      ...|++++|++.+++..        +. -+.+...+..+..++...|++++|...++++++.+ +.+...+..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            55677777777777776        22 13334556666667777777777777777777653 2346677777778888


Q ss_pred             cCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571          562 CGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF  638 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~  638 (681)
                      .|++++|...|+++..  | +...|..+..++...|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|++.|
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888877665  3 36678888888888888888 88888888753 346778888888888888888888888


Q ss_pred             HHhhhcCCCCCC-hhHHHHHHHHHhhcCC--------HHHHHHHHHhcc
Q 047571          639 NVMSRGYKIEAL-EEHYLIMIDILTRFGR--------IEEAHRFREMSS  678 (681)
Q Consensus       639 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~  678 (681)
                      ++..   ...|+ ...+..+..++...|+        +++|.+.+++++
T Consensus       558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            8554   34565 5667777777766444        666776666554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.77  E-value=1.3e-07  Score=90.85  Aligned_cols=199  Identities=11%  Similarity=-0.013  Sum_probs=96.9

Q ss_pred             CCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc-cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047571          391 NGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ-LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLK  469 (681)
Q Consensus       391 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  469 (681)
                      .|++++|.+++++..+..  +.         .+.. .++++.|...|..+               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            345666666666555431  10         1222 45566665555443               345556677777666


Q ss_pred             HHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCC---CCC--HHHHHHHHHHhccccchHHHHH
Q 047571          470 LFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKH---RPD--SVAMARMLSVSGQLKALKLGKE  535 (681)
Q Consensus       470 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~  535 (681)
                      .|.+..+     .+    ..+|+.+...|...|++++|+..|++..+.-.   .+.  ..++..+...|.. |++++|..
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            6655432     11    22455556666666666666666665543200   111  1233344444444 45555554


Q ss_pred             HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CC
Q 047571          536 IHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG----GF  611 (681)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~  611 (681)
                      .+++.++......               +..           .-..+++.+...|...|++++|+..|++..+.    +.
T Consensus       137 ~~~~Al~~~~~~~---------------~~~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  190 (307)
T 2ifu_A          137 LYQQAAAVFENEE---------------RLR-----------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN  190 (307)
T ss_dssp             HHHHHHHHHHHTT---------------CHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCC---------------Chh-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence            4444432100000               000           00234556666666666666666666666542    11


Q ss_pred             CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          612 TPN-HFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       612 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      .++ ...+..++.++...|++++|.+.|++..
T Consensus       191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            111 1244455555566667777777666554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.76  E-value=1.1e-07  Score=82.67  Aligned_cols=149  Identities=14%  Similarity=0.036  Sum_probs=101.7

Q ss_pred             cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHHHHH-HHcCCChHHHHHH
Q 047571          526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAIIEA-YGYNDLCQEALSL  602 (681)
Q Consensus       526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~~~a~~~  602 (681)
                      ..|++++|...++...+.. +.++..+..+..+|...|++++|...++++..  |+...+..+... +...++..+|+..
T Consensus        18 ~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~   96 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKR   96 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHH
Confidence            3344444444444333321 22456677778888888888888888888776  433222222212 1222334457889


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          603 FDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       603 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +++..+.. +.+...+..+..++...|++++|++.|+++.+. ...+ +...+..++.++...|+.++|...+++.
T Consensus        97 ~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           97 LEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            99988852 336888999999999999999999999988764 3322 3568889999999999999999988764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.76  E-value=3.2e-07  Score=87.39  Aligned_cols=210  Identities=9%  Similarity=-0.050  Sum_probs=110.8

Q ss_pred             CHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CcCCC-HHHHHHHHHHhhccCChhHHHHHH
Q 047571          362 DMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQE----GFRPD-VVTVATVIPVCSQLKALNHGKEIH  436 (681)
Q Consensus       362 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  436 (681)
                      ++++|...|..           ....|...|++++|...|.+..+.    |-.++ ..+|..+..++...|++++|...+
T Consensus        32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            36666665544           345566777777777777766442    21111 345566666666667777776666


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHhHhCCCC-CC-
Q 047571          437 AYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIEN-GRLDDALGVFRSMQLSKHR-PD-  513 (681)
Q Consensus       437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~-p~-  513 (681)
                      +...+..               ...|+...+           ..+++.+...|... |++++|+..|++..+.... .+ 
T Consensus       101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A          101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            6655421               111111111           11334444455553 5555555555554432100 00 


Q ss_pred             ---HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHhhhCCC--CCh--
Q 047571          514 ---SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVP------FVAAENIKMYGMCGFLECAKLVFDAVPV--KGS--  580 (681)
Q Consensus       514 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--  580 (681)
                         ..++..+...+...|++++|...+++..+.......      ..+..+..++...|++++|...+++...  |+.  
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               224455555566666666666666665554322211      1455666677777777777777777665  321  


Q ss_pred             ----hhHHHHHHHHH--cCCChHHHHHHHHHHHh
Q 047571          581 ----ITWTAIIEAYG--YNDLCQEALSLFDKMRN  608 (681)
Q Consensus       581 ----~~~~~l~~~~~--~~~~~~~a~~~~~~m~~  608 (681)
                          ..+..++.++.  ..+++++|+..|+++..
T Consensus       235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence                12334455554  35667778777776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.73  E-value=2.2e-07  Score=87.00  Aligned_cols=167  Identities=11%  Similarity=0.037  Sum_probs=108.2

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC--CChhH
Q 047571          478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPD----SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA--SVPFV  551 (681)
Q Consensus       478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~  551 (681)
                      +...+-.+...+.+.|++++|+..|+++.+..  |+    ...+..+..++...|+++.|...++.+++....  ..+. 
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-   90 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ-   90 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH-
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH-
Confidence            44555666667777788888888888777643  32    345555556666666666666666666654221  1122 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHc--------CCChHHHHHHHHHHHhCCCCCCHHH------
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGY--------NDLCQEALSLFDKMRNGGFTPNHFT------  617 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~~------  617 (681)
                                                    .+..+..++..        .|++++|+..|+++.+.. +.+...      
T Consensus        91 ------------------------------a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~  139 (261)
T 3qky_A           91 ------------------------------AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK  139 (261)
T ss_dssp             ------------------------------HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred             ------------------------------HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH
Confidence                                          33344444444        566666666666665531 112222      


Q ss_pred             -----------HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc----------CCHHHHHHHHH
Q 047571          618 -----------FKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRF----------GRIEEAHRFRE  675 (681)
Q Consensus       618 -----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~  675 (681)
                                 +..+...|.+.|++++|+..|+.+.+...-.+ ....+..++.+|.+.          |++++|+..++
T Consensus       140 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~  219 (261)
T 3qky_A          140 IRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE  219 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence                       25678889999999999999999987633333 356788888999876          89999999988


Q ss_pred             hcc
Q 047571          676 MSS  678 (681)
Q Consensus       676 ~~~  678 (681)
                      ++.
T Consensus       220 ~~~  222 (261)
T 3qky_A          220 RLL  222 (261)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.72  E-value=3.1e-07  Score=75.53  Aligned_cols=130  Identities=15%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG  560 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  560 (681)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|...++.+.+.+.               
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence            45566667777777777777777776543 22344444455555555555555555555444321               


Q ss_pred             hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047571          561 MCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNV  640 (681)
Q Consensus       561 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  640 (681)
                                       .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++
T Consensus        67 -----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  128 (136)
T 2fo7_A           67 -----------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK  128 (136)
T ss_dssp             -----------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -----------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence                             224466777788888888999998888888753 44677888888889999999999999888


Q ss_pred             hhhc
Q 047571          641 MSRG  644 (681)
Q Consensus       641 ~~~~  644 (681)
                      +.+.
T Consensus       129 ~~~~  132 (136)
T 2fo7_A          129 ALEL  132 (136)
T ss_dssp             HHHH
T ss_pred             HHcc
Confidence            7653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.72  E-value=3.2e-07  Score=83.47  Aligned_cols=184  Identities=11%  Similarity=0.076  Sum_probs=114.7

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CC-HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCC--hhHHHHH
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PD-SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASV--PFVAAEN  555 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l  555 (681)
                      ..+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++...|++++|...++.+++......  +..+..+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            34555667788899999999999998875321 11 34667777888888999999999998887643322  1234444


Q ss_pred             HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHH----------------
Q 047571          556 IKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTF----------------  618 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~----------------  618 (681)
                      ..++...|..     .+        ..|..+...+...|++++|+..|+++.+.  .|+ ...+                
T Consensus        85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence            4444432210     00        01222223334456677777777777664  232 2221                


Q ss_pred             -HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          619 -KVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       619 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                       ..+...+.+.|++++|+..|+.+.+...-.|. ...+..++.+|.+.|+.++|++.++.+.
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence             24556778889999999999888775322221 3568888888999999999988887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.70  E-value=4.3e-07  Score=81.89  Aligned_cols=123  Identities=13%  Similarity=-0.060  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADE  633 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~  633 (681)
                      .+...+...|++++|...+++...++...|..+...|...|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~   89 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   89 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence            344455556666666666666655555566666666666666666666666666542 3355556666666666666666


Q ss_pred             HHHHHHHhhhcCC-------------CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          634 ACRIFNVMSRGYK-------------IEAL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       634 A~~~~~~~~~~~~-------------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      |++.++...+...             ..|+ ...+..++.+|.+.|++++|.+.+++.
T Consensus        90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6666665554211             1111 245566666666666666666666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.68  E-value=1.8e-06  Score=80.38  Aligned_cols=173  Identities=10%  Similarity=-0.010  Sum_probs=99.5

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHH
Q 047571          354 VDMYCKCRDMNSAWRVFYETEERNE-ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHG  432 (681)
Q Consensus       354 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  432 (681)
                      |+-..-.|.+..++.-...+...+. ..-.-+.++++..|+++..         ..-.|....+..+...+ ..+    +
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a   85 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N   85 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred             HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence            4445557888888776555543322 2223345777777776531         11233333333333333 222    5


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571          433 KEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVR-----NVISWTAMIDSCIENGRLDDALGVFRSMQL  507 (681)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~  507 (681)
                      ...+++....+ .++..++..+..++...|++++|++++.+....     +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            56666655544 344455556777777788888888888776432     334566667777888888888888888766


Q ss_pred             CCCCC-----CHHHHHHHHHHhc--ccc--chHHHHHHHHHHHHc
Q 047571          508 SKHRP-----DSVAMARMLSVSG--QLK--ALKLGKEIHGQVLKK  543 (681)
Q Consensus       508 ~g~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~  543 (681)
                      .  .|     +..+...+..++.  ..|  +...|..+|+++.+.
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~  207 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT  207 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            3  45     2455555554422  223  666777777766543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.64  E-value=5.9e-05  Score=77.01  Aligned_cols=363  Identities=10%  Similarity=-0.026  Sum_probs=199.1

Q ss_pred             hhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCC-hHHHHHHHh
Q 047571          191 YRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGK-IKLARRVFD  269 (681)
Q Consensus       191 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~~~  269 (681)
                      +..|..+|+.+...  -|.              |+.+.+.++|+.....  .|+...|...+....+.++ .+....+|+
T Consensus        11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe   72 (493)
T 2uy1_A           11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE   72 (493)
T ss_dssp             -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred             hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            55666666665543  222              7888888888887763  4677787777776666553 234445554


Q ss_pred             ccC------CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhh---hhhhcccchhhhh
Q 047571          270 ETG------DRDIVVWGSMIAGFA----HNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGE---AWARKLGQEVHAY  336 (681)
Q Consensus       270 ~~~------~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~  336 (681)
                      ...      ..+...|...+..+.    ..++.+.+..+|++.+..   |.. .+..+-..|..   ......+..+...
T Consensus        73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~  148 (493)
T 2uy1_A           73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKKIVGD  148 (493)
T ss_dssp             HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            432      124566666665443    245677788888887762   211 11111111111   1111111111111


Q ss_pred             hhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC----CChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHH
Q 047571          337 VLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE----RNEILWTALMSGYVSNG--R-----LEQALRSIAWMQ  405 (681)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m~  405 (681)
                      .                      .+.+..|..+++.+..    .+...|...+.--...+  -     .+.+..+|+++.
T Consensus       149 ~----------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al  206 (493)
T 2uy1_A          149 T----------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL  206 (493)
T ss_dssp             H----------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             H----------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH
Confidence            0                      0112222222222211    12334544444322221  1     244667888877


Q ss_pred             HcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH-HHHHhhCC---------
Q 047571          406 QEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS-LKLFDEME---------  475 (681)
Q Consensus       406 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~---------  475 (681)
                      ... +-+...|...+.-+.+.|+.+.|..+++.....  +.+...+..    |....+.++. ..+.+...         
T Consensus       207 ~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~  279 (493)
T 2uy1_A          207 DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEK  279 (493)
T ss_dssp             HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC---------
T ss_pred             HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhh
Confidence            653 344566666666677888999999999998887  333333322    2221111111 11222111         


Q ss_pred             -C--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcc-ccchHHHHHHHHHHHHcCCCCChhH
Q 047571          476 -V--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQ-LKALKLGKEIHGQVLKKDFASVPFV  551 (681)
Q Consensus       476 -~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~  551 (681)
                       .  .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.- +-++..
T Consensus       280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~  356 (493)
T 2uy1_A          280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLL  356 (493)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHH
T ss_pred             hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHH
Confidence             0  01134566666666778899999999988 321 2344444322211112 236889999999888753 234556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +...++...+.|+.+.|..+|+.+.. ....|...+..-...|+.+.+.++++++.+
T Consensus       357 ~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          357 KEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66677777888999999999988843 456677777776778888888888887763

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.64  E-value=7.2e-06  Score=83.80  Aligned_cols=121  Identities=11%  Similarity=0.068  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          550 FVAAENIKMYGMCGFLECAKLVFDAVPVKG--SITWTAIIEAYGY-NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      .+|...+..+.+.+..+.|..+|+++..|+  ...|-..+..-.. .++.+.|..+|+...+. ++-++..+...++...
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~  365 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLL  365 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            456666777777788999999998884343  2233222221112 34699999999998875 2334555666777778


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +.|+.+.|..+|+.+.+      ....|...++.-.+.|+.+.+.+++++.
T Consensus       366 ~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          366 RIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             HHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            88999999999997632      3577888887778889999998887765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.64  E-value=8.6e-08  Score=80.73  Aligned_cols=140  Identities=8%  Similarity=-0.046  Sum_probs=103.8

Q ss_pred             HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHH
Q 047571          522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQE  598 (681)
Q Consensus       522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~  598 (681)
                      ..+...|++++|+..+....... +-.+..+..+..+|.+.|++++|...|+++..  | +..+|..+...|...|++++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            44555677777777776665431 11244556778888888999999988887766  3 47789999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH-HHHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 047571          599 ALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI-FNVMSRGYKIEAL-EEHYLIMIDILTRFGR  666 (681)
Q Consensus       599 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  666 (681)
                      |+..|++..+.. +-+...+..+...|.+.|++++|.+. +++..+.   .|+ +..|.....++.+.|+
T Consensus        84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCc
Confidence            999999999853 33688899999999999998877665 4766653   453 6778877888877775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.63  E-value=5.1e-07  Score=80.94  Aligned_cols=132  Identities=8%  Similarity=-0.120  Sum_probs=75.0

Q ss_pred             HHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCC-
Q 047571          520 MLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDL-  595 (681)
Q Consensus       520 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~-  595 (681)
                      +..++...|++++|...+++.++.. +-++..+..+..+|...|++++|...|+++..  | +..+|..+...|...|+ 
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            4555556666666666666666543 22455666666677777777777777766655  3 35566666666654432 


Q ss_pred             -hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHH
Q 047571          596 -CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIM  657 (681)
Q Consensus       596 -~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  657 (681)
                       .+.+...+++...  ..|....+..+..++...|++++|++.|++..+   ..|+......+
T Consensus       139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l  196 (208)
T 3urz_A          139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTL  196 (208)
T ss_dssp             HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence             3444555555432  223333444455566667778888888876653   45655444433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.62  E-value=4.1e-07  Score=81.56  Aligned_cols=173  Identities=14%  Similarity=-0.003  Sum_probs=120.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 047571          484 AMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG  563 (681)
Q Consensus       484 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  563 (681)
                      .....+...|++++|+..|++..+.  .|+........ ....                 .....+.....+..+|.+.|
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~-----------------~~~~~~~~~~~lg~~~~~~g   68 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK-----------------NSEISSKLATELALAYKKNR   68 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT-----------------TSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc-----------------hhhhhHHHHHHHHHHHHHCC
Confidence            3445677888899999888888764  34432211110 0000                 01112333445888999999


Q ss_pred             CHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH--HHHHHHH
Q 047571          564 FLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA--DEACRIF  638 (681)
Q Consensus       564 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~--~~A~~~~  638 (681)
                      ++++|...+++...  | +...|..+...+...|++++|+..|++..+.. +.+...+..+..+|...|+.  +.+...+
T Consensus        69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~  147 (208)
T 3urz_A           69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDY  147 (208)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999998877  4 47789999999999999999999999999953 44788899999888776643  3445555


Q ss_pred             HHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhccCC
Q 047571          639 NVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSSSL  680 (681)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  680 (681)
                      +...   ...|....+..+..++...|++++|++.+++...+
T Consensus       148 ~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          148 KKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4332   23333344556677888899999999999986543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.60  E-value=2.6e-06  Score=76.43  Aligned_cols=158  Identities=9%  Similarity=-0.026  Sum_probs=99.5

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhcccc----chHHHHHHHHHHHHcCCCCChhHHH
Q 047571          478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLK----ALKLGKEIHGQVLKKDFASVPFVAA  553 (681)
Q Consensus       478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  553 (681)
                      +...+..+...|...+++++|++.|++..+.|   +...+..+-..|.. +    +.++|...+++..+.+   ++..+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            34445555555555666666666666666544   33444445455554 4    6666666666665543   455566


Q ss_pred             HHHHHHHh----cCCHHHHHHHhhhCCCCC-----hhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571          554 ENIKMYGM----CGFLECAKLVFDAVPVKG-----SITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKV  620 (681)
Q Consensus       554 ~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~  620 (681)
                      .+..+|..    .+++++|...|++....+     ..++..|...|..    .+++++|+..|++..+.  +.+...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            66666665    667777777777766622     4677777777776    67788888888888775  234445666


Q ss_pred             HHHHHhcc-C-----CHHHHHHHHHHhhhc
Q 047571          621 LLSICNQA-G-----FADEACRIFNVMSRG  644 (681)
Q Consensus       621 l~~~~~~~-g-----~~~~A~~~~~~~~~~  644 (681)
                      |...|... |     ++++|.++|+...+.
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            66666543 2     788888888877664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.60  E-value=2.1e-06  Score=77.12  Aligned_cols=172  Identities=8%  Similarity=-0.112  Sum_probs=140.6

Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC----CHHHHHHH
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG----FLECAKLV  571 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~  571 (681)
                      .+|++.|++..+.|   +...+..+-..+...+++++|...|++..+.+   ++..+..+..+|.. +    ++++|...
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35778888888764   66777778888888999999999999999865   67788889999988 7    89999999


Q ss_pred             hhhCCCC-ChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhc----cCCHHHHHHHHHHh
Q 047571          572 FDAVPVK-GSITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFT-PNHFTFKVLLSICNQ----AGFADEACRIFNVM  641 (681)
Q Consensus       572 ~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  641 (681)
                      |++...+ +..++..|...|..    .+++++|+++|++..+.|.. .++..+..|...|..    .+++++|+++|++.
T Consensus        76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9988774 47788888888887    88999999999999987521 127788888888988    88999999999988


Q ss_pred             hhcCCCCCChhHHHHHHHHHhhc-C-----CHHHHHHHHHhc
Q 047571          642 SRGYKIEALEEHYLIMIDILTRF-G-----RIEEAHRFREMS  677 (681)
Q Consensus       642 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~  677 (681)
                      .+.   ..+...+..|..+|... |     +.++|.+++++.
T Consensus       156 ~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          156 SSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             HHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            764   23445778888888654 3     899999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.58  E-value=6.3e-07  Score=96.21  Aligned_cols=168  Identities=10%  Similarity=-0.057  Sum_probs=113.2

Q ss_pred             hccCChhHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhc
Q 047571          424 SQLKALNHGKEIHAYAV--------KNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIEN  492 (681)
Q Consensus       424 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~  492 (681)
                      ...|++++|.+.++...        +.. +.+...+..+...+.+.|++++|.+.|+++.+  | +...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            66777888888887776        322 34556677777777788888888888877664  3 455677777777788


Q ss_pred             CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571          493 GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVF  572 (681)
Q Consensus       493 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  572 (681)
                      |++++|++.|++..+.. +-+...+..+..++...|++++ ...++++++.+ +.+...+..+..+|.+.|++++|...|
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888888777653 2244566667777777777777 77777777654 224566777777777777777777777


Q ss_pred             hhCCC--CC-hhhHHHHHHHHHcCCC
Q 047571          573 DAVPV--KG-SITWTAIIEAYGYNDL  595 (681)
Q Consensus       573 ~~~~~--~~-~~~~~~l~~~~~~~~~  595 (681)
                      +++..  |+ ...|..+..++...++
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCC
Confidence            77766  33 4456666666655444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.57  E-value=6e-07  Score=94.69  Aligned_cols=150  Identities=10%  Similarity=-0.062  Sum_probs=107.5

Q ss_pred             cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 047571          492 NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLV  571 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  571 (681)
                      .|++++|++.+++..+.. +-+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999887653 3346778888888888999999999999888764 23577888888899999999999999


Q ss_pred             hhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHhhhc
Q 047571          572 FDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA---GFADEACRIFNVMSRG  644 (681)
Q Consensus       572 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  644 (681)
                      +++...  | +...|..+...|...|++++|++.+++..+.. +.+...+..+..++...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            887766  3 46678888888999999999999999988853 34677888888888888   8999999999888765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.56  E-value=3.9e-07  Score=87.47  Aligned_cols=195  Identities=10%  Similarity=-0.063  Sum_probs=130.5

Q ss_pred             cCChHHHHHHHhhCCCCCcchHHHHHHHHHh-cCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHH
Q 047571          461 CGVLDYSLKLFDEMEVRNVISWTAMIDSCIE-NGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQ  539 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  539 (681)
                      .|++++|.+++++..+.....       +.+ .+++++|...|.+.               ...|...|++++|...+.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence            467778888777654311100       111 35566666665544               3345566777777777766


Q ss_pred             HHHcCC---C--CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHH
Q 047571          540 VLKKDF---A--SVPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDK  605 (681)
Q Consensus       540 ~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  605 (681)
                      ..+...   .  .....+..+..+|...|++++|...+++...     .+    ..+++.+...|.. |++++|+..|++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            554211   0  1134666777778888888777777765443     11    3467888888888 999999999999


Q ss_pred             HHhCC----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          606 MRNGG----FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGY---KIEAL-EEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       606 m~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      ..+..    -.+ ...++..+...+.+.|++++|++.|++..+..   +..+. ...+..++.++...|++++|.+.+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            87631    111 14678889999999999999999999886631   12122 33677788888899999999999988


Q ss_pred             cc
Q 047571          677 SS  678 (681)
Q Consensus       677 ~~  678 (681)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            54

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.56  E-value=1.2e-06  Score=76.08  Aligned_cols=158  Identities=13%  Similarity=0.046  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH-hcc
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV-SGQ  526 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~  526 (681)
                      +..+...+.+.|++++|...|++..+   .+...+..+...+...|++++|+..+++.....  |+.......... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            44556677788888888888888775   345677778888888888888888888876643  343322211111 111


Q ss_pred             ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHH
Q 047571          527 LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKM  606 (681)
Q Consensus       527 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  606 (681)
                      .+....+...++...+..  |                              .+...+..+...+...|++++|+..|+++
T Consensus        87 ~~~~~~a~~~~~~al~~~--P------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~  134 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN--P------------------------------DNFELACELAVQYNQVGRDEEALELLWNI  134 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS--T------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHhC--C------------------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            112222344444444332  1                              12445666666777777777777777777


Q ss_pred             HhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          607 RNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       607 ~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      .+....+ +...+..+..++...|+.++|...|++..
T Consensus       135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            7643221 24566677777777777777777776554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.54  E-value=3.3e-06  Score=76.73  Aligned_cols=180  Identities=8%  Similarity=0.010  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc----chHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCH-HHHHH
Q 047571          448 VSIITSLMIMYSKCGVLDYSLKLFDEMEV--RNV----ISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDS-VAMAR  519 (681)
Q Consensus       448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~~  519 (681)
                      ...+-.+...+.+.|++++|...|+++.+  |+.    ..+..+..+|.+.|++++|+..|+++.+..-. +.. ..+-.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34455667788999999999999999875  432    36777889999999999999999999875322 111 13333


Q ss_pred             HHHHhcc------------------ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChh
Q 047571          520 MLSVSGQ------------------LKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSI  581 (681)
Q Consensus       520 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  581 (681)
                      +..++..                  .|+.++|...++.+++.... ++........+..-.+...              .
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~--------------~  148 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLA--------------K  148 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHH--------------H
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHH--------------H
Confidence            3333332                  45677777777777664311 1222211111100000000              0


Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CH---HHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NH---FTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..-.+...|...|++++|+..|+++.+.  .| +.   ..+..+..++.+.|++++|++.++.+...
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            1234566788899999999999999985  34 33   56888999999999999999999988764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.50  E-value=1.2e-06  Score=75.22  Aligned_cols=124  Identities=11%  Similarity=-0.077  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  627 (681)
                      .+..+...+...|++++|...+++...   .+...|..+...+...|++++|+..+++..+.. +.+...+..+..++..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            344455556666666666666665544   235567777777777888888888888877753 4466777777778888


Q ss_pred             cCCHHHHHHHHHHhhhcCCCCCChhHH--HHHHHHHhhcCCHHHHHHHHHhc
Q 047571          628 AGFADEACRIFNVMSRGYKIEALEEHY--LIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       628 ~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .|++++|.+.+++..+....  +...+  ..++..+.+.|++++|.+.+++.
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            88888888888877664222  23333  33444467778888888777654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.49  E-value=4.9e-07  Score=75.62  Aligned_cols=92  Identities=12%  Similarity=-0.020  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  627 (681)
                      .+..+...+.+.|++++|...|+++..  | +...|..+..+|...|++++|+..|++..+.. +.++..|..+..+|.+
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            344444455555555555555554443  2 24445555555555555555555555555431 2234445555555555


Q ss_pred             cCCHHHHHHHHHHhhh
Q 047571          628 AGFADEACRIFNVMSR  643 (681)
Q Consensus       628 ~g~~~~A~~~~~~~~~  643 (681)
                      .|++++|++.|+...+
T Consensus       117 lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQ  132 (151)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.49  E-value=1.8e-06  Score=90.94  Aligned_cols=158  Identities=11%  Similarity=-0.024  Sum_probs=118.2

Q ss_pred             cCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHH
Q 047571          461 CGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIH  537 (681)
Q Consensus       461 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  537 (681)
                      .|++++|.+.+++..+  | +...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999998875  3 45688889999999999999999999998864 445778888899999999999999999


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcC---CChHHHHHHHHHHHhCCC
Q 047571          538 GQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYN---DLCQEALSLFDKMRNGGF  611 (681)
Q Consensus       538 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~g~  611 (681)
                      ++..+.. +.+...+..+..+|...|++++|.+.+++...  | +...+..+...+...   |+.++|.+.+++..+.+ 
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~-  158 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG-  158 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence            9999875 33578899999999999999999999998776  3 467888899999999   99999999999998864 


Q ss_pred             CCCHHHHHHH
Q 047571          612 TPNHFTFKVL  621 (681)
Q Consensus       612 ~p~~~~~~~l  621 (681)
                      +.+...|..+
T Consensus       159 p~~~~~~~~l  168 (568)
T 2vsy_A          159 VGAVEPFAFL  168 (568)
T ss_dssp             CCCSCHHHHT
T ss_pred             CcccChHHHh
Confidence            3334444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.48  E-value=4.9e-06  Score=78.78  Aligned_cols=163  Identities=8%  Similarity=0.001  Sum_probs=111.6

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCcc-HHHHHH-
Q 047571          104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYP-WNALLR-  181 (681)
Q Consensus       104 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ll~-  181 (681)
                      +.+...+..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|.+.++++...++.. +..+.. 
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            4566777888888899999999999999999887 6677888899999999999999999999876433322 222222 


Q ss_pred             -HHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHhCCCC-CcHHHhHHHHHHHhcC
Q 047571          182 -GAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKNGFVD-YLILRTSLIDMYFKCG  259 (681)
Q Consensus       182 -~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~  259 (681)
                       .+...+  +.+.++..+++..+.. +.+...+..+...+...|++++|...+..+.+..... +...+..+...+...|
T Consensus       193 ~~l~~~~--~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          193 IELLXQA--ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHH--TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHhhc--ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence             233444  6666777777666553 2344566666667777777777777777776654221 2455666666666666


Q ss_pred             ChHHHHHHHhc
Q 047571          260 KIKLARRVFDE  270 (681)
Q Consensus       260 ~~~~a~~~~~~  270 (681)
                      +.++|...+++
T Consensus       270 ~~~~a~~~~r~  280 (287)
T 3qou_A          270 TGDALASXYRR  280 (287)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCcHHHHHHH
Confidence            66666665543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.48  E-value=1.8e-05  Score=75.16  Aligned_cols=157  Identities=8%  Similarity=-0.005  Sum_probs=82.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHhHhCCC-CCCHH----HHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-----hhHHHH
Q 047571          485 MIDSCIENGRLDDALGVFRSMQLSKH-RPDSV----AMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-----PFVAAE  554 (681)
Q Consensus       485 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~  554 (681)
                      .+..+...|++++|..++++..+... .|+..    .+..+...+...++++.|...+++..+......     ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667778888888888888776421 12211    222345555566677777777777776322211     123455


Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC------CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCCC-HHHHH
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV------KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTPN-HFTFK  619 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~  619 (681)
                      +...|...|++++|...++++..      .+    ..+|..+...|...|++++|+..+++..+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            55555555555555555544431      01    224455555555555555555555554421    11111 34455


Q ss_pred             HHHHHHhccC-CHHHHHHHHHHh
Q 047571          620 VLLSICNQAG-FADEACRIFNVM  641 (681)
Q Consensus       620 ~l~~~~~~~g-~~~~A~~~~~~~  641 (681)
                      .+..++.+.| ++++|.+.+++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHH
Confidence            5555555555 245555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.47  E-value=3e-05  Score=72.99  Aligned_cols=216  Identities=11%  Similarity=0.013  Sum_probs=112.6

Q ss_pred             CChHHHHHHHHHHHHcCcCCCHHH-HHHHHHHhhccC--ChhHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hhc---
Q 047571          392 GRLEQALRSIAWMQQEGFRPDVVT-VATVIPVCSQLK--ALNHGKEIHAYAVKNQFLPNVSIITSLMIMY----SKC---  461 (681)
Q Consensus       392 ~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---  461 (681)
                      ...++|+..++.+...  .|+..| ++.--..+...+  +++++++.++.+...+ +-+..+|+.-...+    ...   
T Consensus        47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence            3345777777777764  344433 344444445555  7777777777777654 22333444333333    333   


Q ss_pred             CChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChh--HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc------h
Q 047571          462 GVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLD--DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA------L  530 (681)
Q Consensus       462 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~  530 (681)
                      ++++++.++++.+.+   .+...|+.-...+.+.|.++  ++++.++++.+.. .-|...++.-.......+.      +
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence            556666666666554   23445555455555555555  6666666666543 2333444433333333332      3


Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHH-HHHHHHHHHhC
Q 047571          531 KLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQE-ALSLFDKMRNG  609 (681)
Q Consensus       531 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~  609 (681)
                      +++.+.++.++....                                .|...|+-+...+.+.|+... +..+.+++.+.
T Consensus       203 ~eEl~~~~~aI~~~p--------------------------------~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~  250 (306)
T 3dra_A          203 DEELNYVKDKIVKCP--------------------------------QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL  250 (306)
T ss_dssp             HHHHHHHHHHHHHCS--------------------------------SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred             HHHHHHHHHHHHhCC--------------------------------CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence            444444444443321                                234455555555555554322 33444444432


Q ss_pred             C--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          610 G--FTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       610 g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +  -+.+...+..++.++.+.|+.++|+++++.+.+
T Consensus       251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            1  123566677777777777777777777777654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.47  E-value=3.5e-07  Score=76.90  Aligned_cols=119  Identities=11%  Similarity=-0.022  Sum_probs=97.1

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA  631 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~  631 (681)
                      |..++...|++++|...+.....  |+ ...+-.+...|...|++++|++.|++..+.. +-+..+|..+..++.+.|++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            45667778999999999988777  22 5567788999999999999999999999853 34789999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHH-HHHhc
Q 047571          632 DEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHR-FREMS  677 (681)
Q Consensus       632 ~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~-~~~~~  677 (681)
                      ++|+..|+...+.   .|+ ...+..+..+|.+.|+.++|.+ ++++.
T Consensus        82 ~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a  126 (150)
T 4ga2_A           82 DKAVECYRRSVEL---NPTQKDLVLKIAELLCKNDVTDGRAKYWVERA  126 (150)
T ss_dssp             HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9999999988764   453 7889999999999999887665 45653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.45  E-value=7.4e-06  Score=75.17  Aligned_cols=126  Identities=10%  Similarity=-0.047  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHh
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICN  626 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~  626 (681)
                      +.-.+...+...|++++|.++|+.+..  |+....-.+...+.+.+++++|+..|++..... .|.  ...+..+..++.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence            344456667777777777777777665  433344445556667777777777776554421 111  235666677777


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          627 QAGFADEACRIFNVMSRGYKIEAL--EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ..|++++|++.|++.... ...|.  .........++.+.|+.++|+.+|+++.
T Consensus       183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            777777777777776642 22142  3455666677777777777777777653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.45  E-value=4.2e-06  Score=79.63  Aligned_cols=159  Identities=6%  Similarity=-0.022  Sum_probs=83.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-----HHHHHHHHHhccccchHHHHHHHHHHHHcCCC---CC--hhHH
Q 047571          483 TAMIDSCIENGRLDDALGVFRSMQLSKHRPDS-----VAMARMLSVSGQLKALKLGKEIHGQVLKKDFA---SV--PFVA  552 (681)
Q Consensus       483 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~  552 (681)
                      ...+..+...|++++|.+.+++..+.......     ..+..+...+...|++++|...+.+..+....   +.  ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            33455566677777777777666554221111     11222333444555666666666655542111   11  2345


Q ss_pred             HHHHHHHHhcCCHHHHHHHhhhCCC-----CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHH
Q 047571          553 AENIKMYGMCGFLECAKLVFDAVPV-----KG-----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFT  617 (681)
Q Consensus       553 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~  617 (681)
                      ..+...|...|++++|...++++..     ++     ..+|+.+...|...|++++|+..+++..+.    +... -..+
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~  238 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL  238 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            5555555556666655555554431     11     135666666666666666666666665432    1111 1455


Q ss_pred             HHHHHHHHhccCCHHHH-HHHHHHh
Q 047571          618 FKVLLSICNQAGFADEA-CRIFNVM  641 (681)
Q Consensus       618 ~~~l~~~~~~~g~~~~A-~~~~~~~  641 (681)
                      |..+..+|.+.|++++| ...+++.
T Consensus       239 ~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          239 YYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            66666666666766666 5555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.41  E-value=1.6e-06  Score=77.40  Aligned_cols=52  Identities=10%  Similarity=-0.066  Sum_probs=28.8

Q ss_pred             HhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 047571          490 IENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLK  542 (681)
Q Consensus       490 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  542 (681)
                      ...|++++|.+.++.+... .......+..+...+...|+++.|...+++..+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   54 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQ   54 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4567788888755444331 122344566666666677777777777766554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.37  E-value=2e-06  Score=71.86  Aligned_cols=106  Identities=12%  Similarity=0.045  Sum_probs=88.7

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 047571           61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN  140 (681)
Q Consensus        61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  140 (681)
                      +...+...|.++.++..+...+.+.|++++|+..|++..... |-+...|..+..++...|++++|...|++..+.. +.
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~  102 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KN  102 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SS
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CC
Confidence            556677777888888888899999999999999999988775 4577888888889999999999999999998887 55


Q ss_pred             chhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571          141 NGFLRTKLVKMYTSCGSFEDAEKVFDES  168 (681)
Q Consensus       141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~  168 (681)
                      ++..|..+..+|...|++++|++.|++.
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~a  130 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELV  130 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6778888888888888888888888753

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.37  E-value=4.5e-06  Score=67.52  Aligned_cols=106  Identities=11%  Similarity=-0.101  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          550 FVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       550 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      ..+......|.+.|++++|...|++...  | +...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            3445556667777777777777776554  3 36677777788888888888888888887743 346777888888888


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHH
Q 047571          627 QAGFADEACRIFNVMSRGYKIEAL-EEHYLIMID  659 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~  659 (681)
                      ..|++++|++.|+...+.   .|+ ...+..|..
T Consensus        93 ~~~~~~~A~~~~~~al~l---~P~~~~a~~~l~~  123 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV---DPSNEEAREGVRN  123 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH---CcCCHHHHHHHHH
Confidence            888888888888877653   443 444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.36  E-value=4.4e-06  Score=68.33  Aligned_cols=115  Identities=7%  Similarity=-0.138  Sum_probs=88.3

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571          548 VPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI  624 (681)
Q Consensus       548 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  624 (681)
                      +...+..+...+...|++++|...+++...  | +...|..+...+...|++++|++.+++..+.. +.+...+..+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            355666677777777777777777776655  2 46678888888889999999999999988853 4477888889999


Q ss_pred             HhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCC
Q 047571          625 CNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGR  666 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  666 (681)
                      +.+.|++++|.+.+++..+.   .| +...+..+..++.+.|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence            99999999999999988764   23 35667777777776664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.35  E-value=5.6e-06  Score=66.70  Aligned_cols=114  Identities=15%  Similarity=0.021  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+...|++++|...++++..   .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            34455566666666777777766666544   235577788888888999999999999888753 45778888888899


Q ss_pred             hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC
Q 047571          626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG  665 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  665 (681)
                      ...|++++|.++++++.+..  +.+...+..+..++.+.|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence            99999999999998887641  223556666666665443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.35  E-value=0.00044  Score=65.06  Aligned_cols=235  Identities=9%  Similarity=0.083  Sum_probs=157.7

Q ss_pred             HHHHHhcCC-HHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHh----
Q 047571          354 VDMYCKCRD-MNSAWRVFYETEER---NEILWTALMSGYVSNG--RLEQALRSIAWMQQEGFRPDVVTVATVIPVC----  423 (681)
Q Consensus       354 ~~~~~~~~~-~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----  423 (681)
                      +.+..+.|. .++|+.++..+..-   +..+|+.--..+...|  +++++++.++.+.....+ +...++.--..+    
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence            333344455 46899999887653   4567888888888888  999999999999886422 333343322222    


Q ss_pred             hcc---CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--HHHHHHhhCCC---CCcchHHHHHHHHHhcCC-
Q 047571          424 SQL---KALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD--YSLKLFDEMEV---RNVISWTAMIDSCIENGR-  494 (681)
Q Consensus       424 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-  494 (681)
                      ...   ++++++..+++.+.+.. +-+..+|+--...+.+.|.++  ++.++++++.+   .|...|+.-...+.+.++ 
T Consensus       118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~  196 (306)
T 3dra_A          118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL  196 (306)
T ss_dssp             HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred             HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence            333   78999999999999876 557778877777778888888  99999998876   455677776666777776 


Q ss_pred             -----hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          495 -----LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKAL-KLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       495 -----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                           ++++++.++++.... +-|...++..-..+.+.|.. +....+...+.+.+                        
T Consensus       197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~------------------------  251 (306)
T 3dra_A          197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE------------------------  251 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG------------------------
T ss_pred             chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc------------------------
Confidence                 889999999998864 44566666666555555542 22334444433221                        


Q ss_pred             HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 047571          569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVL  621 (681)
Q Consensus       569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l  621 (681)
                           .....++..+..+...|.+.|+.++|+++++.+.+. +.| ....|...
T Consensus       252 -----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~~yW~~~  299 (306)
T 3dra_A          252 -----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRSNFWDYQ  299 (306)
T ss_dssp             -----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred             -----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHHHHHHHH
Confidence                 000123446666777777778888888888888763 234 44445443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.35  E-value=1.2e-05  Score=72.24  Aligned_cols=124  Identities=13%  Similarity=0.069  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG  560 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  560 (681)
                      .+..+...+...|++++|+..|++..    .|+...+..+..++...|++++|...++...+.. +.+...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            45556677888899999999988773    5677788888888888888888888888887764 234566667777777


Q ss_pred             hcCCHHHHHHHhhhCCC--CC-h----------------hhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          561 MCGFLECAKLVFDAVPV--KG-S----------------ITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       561 ~~g~~~~a~~~~~~~~~--~~-~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      ..|++++|...++++..  |+ .                ..|..+..+|...|++++|.+.|++..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            77777777777766544  11 1                45666666677777777777777777663

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.35  E-value=5.6e-06  Score=66.92  Aligned_cols=95  Identities=11%  Similarity=-0.004  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI  658 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~  658 (681)
                      ...+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.++...+.   .| +...|..++
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg   88 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHH
Confidence            3467788999999999999999999999853 458899999999999999999999999988764   34 478899999


Q ss_pred             HHHhhcCCHHHHHHHHHhcc
Q 047571          659 DILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       659 ~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .+|...|++++|++.+++..
T Consensus        89 ~~~~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999998754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.33  E-value=2.5e-05  Score=74.22  Aligned_cols=155  Identities=11%  Similarity=-0.032  Sum_probs=108.1

Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCC---c------chHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CC----HHHHHH
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEVRN---V------ISWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PD----SVAMAR  519 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~~~---~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~  519 (681)
                      .+..+...|++++|..++++..+..   .      ..+..+...+...|++++|+..+++....... ++    ..++..
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3566777888888888887765411   1      12334555566677888888888888764322 22    225777


Q ss_pred             HHHHhccccchHHHHHHHHHHHHc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHH
Q 047571          520 MLSVSGQLKALKLGKEIHGQVLKK-----DFAS-VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWT  584 (681)
Q Consensus       520 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~  584 (681)
                      +..+|...|++++|...++++.+.     +..+ ...++..+...|.+.|++++|...+++...     .+    ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            778888888888888888877741     1111 244677888889999999999988887665     11    45788


Q ss_pred             HHHHHHHcCCC-hHHHHHHHHHHHh
Q 047571          585 AIIEAYGYNDL-CQEALSLFDKMRN  608 (681)
Q Consensus       585 ~l~~~~~~~~~-~~~a~~~~~~m~~  608 (681)
                      .+..+|...|+ +++|.+.+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88999999994 6999999888764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.33  E-value=1.7e-06  Score=72.46  Aligned_cols=95  Identities=14%  Similarity=-0.137  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+...|++++|...|+++..  | +...|..+..+|...|++++|+..|++..+.. +.+...+..+..++
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            55666777888888999999888887665  3 46678888888888899999999998888753 34677888888888


Q ss_pred             hccCCHHHHHHHHHHhhhc
Q 047571          626 NQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...|++++|++.|+...+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            8889999999888887664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.31  E-value=2e-05  Score=74.86  Aligned_cols=161  Identities=12%  Similarity=-0.079  Sum_probs=121.0

Q ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hh
Q 047571          516 AMARMLSVSGQLKALKLGKEIHGQVLKKDFASV-----PFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SI  581 (681)
Q Consensus       516 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~  581 (681)
                      .+...+..+...|++++|.+.+....+......     ...+..+...+...|++++|...+++...     .+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344456677889999999999998887543221     12344566777888999999999876643     22    34


Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHH---hC-CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc---CCCCCC-h
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMR---NG-GFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG---YKIEAL-E  651 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~---~~-g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~  651 (681)
                      +|+.+...|...|++++|+..+++..   +. +-.+  ...++..+...|...|++++|++++++..+.   .+.... .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78999999999999999999999987   32 1111  1268889999999999999999999987542   122222 6


Q ss_pred             hHHHHHHHHHhhcCCHHHH-HHHHHh
Q 047571          652 EHYLIMIDILTRFGRIEEA-HRFREM  676 (681)
Q Consensus       652 ~~~~~l~~~~~~~g~~~~A-~~~~~~  676 (681)
                      ..|..++.+|.+.|+.++| ...+++
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            7889999999999999999 776665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.29  E-value=5.3e-06  Score=80.50  Aligned_cols=92  Identities=8%  Similarity=-0.142  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID  659 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~  659 (681)
                      .+|..+..+|...|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+.   .| +...+..+..
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~  272 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAV  272 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence            466677777777777777777777777642 336677777777777777777777777766653   33 3566777777


Q ss_pred             HHhhcCCHHHH-HHHHHh
Q 047571          660 ILTRFGRIEEA-HRFREM  676 (681)
Q Consensus       660 ~~~~~g~~~~A-~~~~~~  676 (681)
                      ++.+.|+.++| ...+++
T Consensus       273 ~~~~~~~~~~a~~~~~~~  290 (336)
T 1p5q_A          273 CQQRIRRQLAREKKLYAN  290 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            77777777776 334443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.28  E-value=6.3e-06  Score=67.05  Aligned_cols=116  Identities=7%  Similarity=-0.125  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+...|++++|...++++..   .+...|..+...+...|++++|++.+++..+.. +.+...+..+...+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            34455566666777777777777766544   245677888888889999999999999988853 44678888899999


Q ss_pred             hccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCH
Q 047571          626 NQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRI  667 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  667 (681)
                      ...|++++|.+.++...+. . +.+...+..+..++.+.|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL-D-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhc-C-ccchHHHHHHHHHHHHHhcC
Confidence            9999999999999988764 1 22467788888888877764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.25  E-value=7.9e-06  Score=70.92  Aligned_cols=117  Identities=9%  Similarity=-0.035  Sum_probs=83.8

Q ss_pred             cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHH-HHcCCCh--HHH
Q 047571          526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEA-YGYNDLC--QEA  599 (681)
Q Consensus       526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~-~~~~~~~--~~a  599 (681)
                      ..|+++.|...++...+.. +.++..+..+...|...|++++|...++++..  | +...|..+... +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4455666666666655543 23456667777777777777777777776655  3 45567777777 7788888  999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          600 LSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       600 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +..++++.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999988853 346788888889999999999999999988764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.25  E-value=1.3e-05  Score=73.55  Aligned_cols=192  Identities=8%  Similarity=-0.051  Sum_probs=117.7

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCChHHHHHHHhhCCC--C-------C-c--------
Q 047571          425 QLKALNHGKEIHAYAVKNQFLPNVSIITSL-------MIMYSKCGVLDYSLKLFDEMEV--R-------N-V--------  479 (681)
Q Consensus       425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~--~-------~-~--------  479 (681)
                      ..++...|.+.|..+.+.. +-....|..+       ...+.+.++..+++..+..-..  |       + .        
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            4677777777777777764 3344455544       3444444444444444443332  1       1 0        


Q ss_pred             ------chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHH
Q 047571          480 ------ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA  553 (681)
Q Consensus       480 ------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  553 (681)
                            ..+-.+...+...|++++|.++|+.+...+  |+..                                   ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-----------------------------------~~~  139 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-----------------------------------VAW  139 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-----------------------------------HHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-----------------------------------HHH
Confidence                  012223445556666666666666555422  2221                                   333


Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC-CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHh
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV-KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN--HFTFKVLLSICN  626 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~  626 (681)
                      .+...+.+.+++++|+..|+.... ++    ...+..+..++...|++++|+..|++.......|.  .........++.
T Consensus       140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~  219 (282)
T 4f3v_A          140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR  219 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence            344567777888888888876554 32    23567778888999999999999999886443253  346677788889


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCChhHHHHH
Q 047571          627 QAGFADEACRIFNVMSRGYKIEALEEHYLIM  657 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  657 (681)
                      +.|+.++|..+|+++...   .|+...+..|
T Consensus       220 ~lGr~deA~~~l~~a~a~---~P~~~~~~aL  247 (282)
T 4f3v_A          220 SQGNESAAVALLEWLQTT---HPEPKVAAAL  247 (282)
T ss_dssp             HHTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhc---CCcHHHHHHH
Confidence            999999999999988775   3444444444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.25  E-value=6.5e-06  Score=73.29  Aligned_cols=157  Identities=10%  Similarity=-0.047  Sum_probs=74.7

Q ss_pred             hcCChHHHHH---HHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CHHHHHHHHHHhccccchH
Q 047571          460 KCGVLDYSLK---LFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLS----KHRP-DSVAMARMLSVSGQLKALK  531 (681)
Q Consensus       460 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~  531 (681)
                      ..|++++|.+   .+..-.......+..+...+...|++++|+..+++....    +..+ ....+..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            3455555555   333322223345555666666666666666666665441    1111 1123334444444555555


Q ss_pred             HHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047571          532 LGKEIHGQVLKK--DFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNG  609 (681)
Q Consensus       532 ~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  609 (681)
                      +|...+++..+.  ....++..                           ....+..+...+...|++++|...+++..+.
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~---------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLA---------------------------ASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHH---------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCccHHH---------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            555554443321  00000000                           0123455555666666666666666665431


Q ss_pred             ----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          610 ----GFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       610 ----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                          +.+. -..++..+...+...|++++|.+.+++..+
T Consensus       137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence                1111 123456666677777777777777766654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.24  E-value=2.6e-06  Score=80.36  Aligned_cols=94  Identities=10%  Similarity=-0.056  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHH
Q 047571          413 VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSC  489 (681)
Q Consensus       413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~  489 (681)
                      ...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|...+++..+  | +...+..+..+|
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555566666777777777777666653 33555666666666666677766666666554  2 334555666666


Q ss_pred             HhcCChhHHHHHHHHhHh
Q 047571          490 IENGRLDDALGVFRSMQL  507 (681)
Q Consensus       490 ~~~~~~~~A~~~~~~m~~  507 (681)
                      ...|++++|+..|++..+
T Consensus        83 ~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.23  E-value=1e-05  Score=67.10  Aligned_cols=95  Identities=13%  Similarity=-0.141  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+.+.|++++|...|+++..  | +...|..+..+|...|++++|+..|++..+.+ +.+...+..+..++
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            34445566677777777777777776655  3 35667777777777777777777777777743 33566677777777


Q ss_pred             hccCCHHHHHHHHHHhhhc
Q 047571          626 NQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...|++++|++.|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            7777777777777776653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.22  E-value=1.8e-05  Score=67.66  Aligned_cols=94  Identities=6%  Similarity=-0.208  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHH--HH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVL--LS  623 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--~~  623 (681)
                      ..++..+..++...|++++|...+++...  | +...|..+...+...|++++|...+++..+.. +.+...+..+  +.
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~  125 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34444455555555555555555554443  2 35577788888889999999999999988853 3355555443  44


Q ss_pred             HHhccCCHHHHHHHHHHhhh
Q 047571          624 ICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       624 ~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+...|++++|++.++....
T Consensus       126 ~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          126 KIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccchHH
Confidence            47788999999999886643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.22  E-value=1.1e-05  Score=67.52  Aligned_cols=90  Identities=12%  Similarity=-0.003  Sum_probs=42.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL  661 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~  661 (681)
                      +..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|+...+.   .| +...+..+..+|
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence            3444444445555555555555544431 224444444555555555555555555544432   12 234444455555


Q ss_pred             hhcCCHHHHHHHHHh
Q 047571          662 TRFGRIEEAHRFREM  676 (681)
Q Consensus       662 ~~~g~~~~A~~~~~~  676 (681)
                      ...|++++|++.+++
T Consensus       100 ~~~g~~~~A~~~~~~  114 (148)
T 2vgx_A          100 LQXGELAEAESGLFL  114 (148)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            555555555554443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.21  E-value=1.3e-05  Score=75.60  Aligned_cols=95  Identities=5%  Similarity=-0.112  Sum_probs=59.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571          447 NVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV  523 (681)
Q Consensus       447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  523 (681)
                      +...+..+...+.+.|++++|...|++..+  | +...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344556666667777777777777766543  3 44566666667777777777777777766542 2334455555666


Q ss_pred             hccccchHHHHHHHHHHHH
Q 047571          524 SGQLKALKLGKEIHGQVLK  542 (681)
Q Consensus       524 ~~~~~~~~~a~~~~~~~~~  542 (681)
                      +...|++++|...++...+
T Consensus        82 ~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.19  E-value=1.3e-05  Score=64.98  Aligned_cols=95  Identities=9%  Similarity=-0.069  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcC-CCCCC----hhHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGY-KIEAL----EEHYLI  656 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~~  656 (681)
                      ++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.++...+.. ...++    ...|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            56667777777888888888888877742 3366777777778888888888888777765421 11111    245667


Q ss_pred             HHHHHhhcCCHHHHHHHHHhc
Q 047571          657 MIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       657 l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ++.++...|++++|++.+++.
T Consensus        89 lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            777777788888888777653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.19  E-value=1.6e-05  Score=62.39  Aligned_cols=98  Identities=13%  Similarity=-0.005  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      ...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+......+...+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            3455566666777777777777777776642 335666777777777777777777777766653111113566777777


Q ss_pred             HHhhc-CCHHHHHHHHHhcc
Q 047571          660 ILTRF-GRIEEAHRFREMSS  678 (681)
Q Consensus       660 ~~~~~-g~~~~A~~~~~~~~  678 (681)
                      ++.+. |++++|.+.+++..
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHhCCHHHHHHHHHHHh
Confidence            77777 77777777776654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.19  E-value=1.9e-05  Score=63.52  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=83.2

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      ...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..+++.+.+.  .+.+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~   85 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN   85 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence            4578888899999999999999999998863 457888999999999999999999999998874  2335678899999


Q ss_pred             HHhhcCCHHHHHHHHHhcc
Q 047571          660 ILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~  678 (681)
                      ++.+.|++++|.++++++.
T Consensus        86 ~~~~~~~~~~A~~~~~~~~  104 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKAL  104 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHH
Confidence            9999999999999998753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.18  E-value=1.2e-05  Score=66.68  Aligned_cols=106  Identities=12%  Similarity=-0.005  Sum_probs=89.8

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 047571           61 FPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN  140 (681)
Q Consensus        61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  140 (681)
                      +...+...|.+...+..+...+.+.|++++|+..|+.....+ +.+...+..+..++...|++++|...|+...... +.
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~   84 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-IN   84 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence            455666777777888888999999999999999999998775 4578888889999999999999999999999887 56


Q ss_pred             chhHHHHHHHHhhcCCChhHHHHhhhhc
Q 047571          141 NGFLRTKLVKMYTSCGSFEDAEKVFDES  168 (681)
Q Consensus       141 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~  168 (681)
                      ++..+..+..+|...|++++|.+.|+..
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7778888899999999999999988753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.17  E-value=3.1e-05  Score=63.10  Aligned_cols=103  Identities=5%  Similarity=-0.050  Sum_probs=88.6

Q ss_pred             CCCCCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhH
Q 047571           65 LPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFL  144 (681)
Q Consensus        65 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  144 (681)
                      .+..+.++.++..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~   86 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG   86 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence            34456667789999999999999999999999998764 4478889999999999999999999999999876 557788


Q ss_pred             HHHHHHHhhcCCChhHHHHhhhhcC
Q 047571          145 RTKLVKMYTSCGSFEDAEKVFDESS  169 (681)
Q Consensus       145 ~~~l~~~~~~~g~~~~a~~~~~~~~  169 (681)
                      +..+..++...|++++|.+.|++..
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8889999999999999999888643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.17  E-value=1.4e-05  Score=68.18  Aligned_cols=95  Identities=7%  Similarity=-0.164  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+...|++++|...|++...  | +...|..+..+|...|++++|+..+++..+.. +.+...|..+..++
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34455555666666666666666665554  2 35567777777777788888888887777743 33567777777777


Q ss_pred             hccCCHHHHHHHHHHhhhc
Q 047571          626 NQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~  644 (681)
                      ...|++++|++.|++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            8888888888887777654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.17  E-value=2.2e-05  Score=63.51  Aligned_cols=94  Identities=10%  Similarity=-0.126  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+.+.|++++|...|++...  | +...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            34556666677777777777777776655  3 35667777777777777777777777777642 33566677777777


Q ss_pred             hccCCHHHHHHHHHHhhh
Q 047571          626 NQAGFADEACRIFNVMSR  643 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~  643 (681)
                      ...|++++|++.|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            777777777777776654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.15  E-value=2.5e-06  Score=74.12  Aligned_cols=115  Identities=10%  Similarity=0.025  Sum_probs=92.9

Q ss_pred             HhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCH--HH
Q 047571          560 GMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI-CNQAGFA--DE  633 (681)
Q Consensus       560 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~--~~  633 (681)
                      ...|++++|...+++...   .+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            456778888888876654   356789999999999999999999999999853 4477888888888 7899998  99


Q ss_pred             HHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          634 ACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       634 A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      |.+.++.+.+.   .| +...+..+..+|.+.|++++|.+.+++..
T Consensus       100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A          100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            99999998874   33 46788899999999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.13  E-value=0.00048  Score=65.54  Aligned_cols=244  Identities=9%  Similarity=-0.012  Sum_probs=122.3

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH-HHHHHHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 047571          382 TALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV-TVATVIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYS  459 (681)
Q Consensus       382 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  459 (681)
                      +.+-....+.+..++|+++++++...  .|+.. .++.--..+...| .+++++.+++.+.... +-+..+|+.-...+.
T Consensus        58 ~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~  134 (349)
T 3q7a_A           58 DYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            33333344455567888888888775  34433 3444444444555 4788888888877654 345556665555555


Q ss_pred             hc-C-ChHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChh--------HHHHHHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571          460 KC-G-VLDYSLKLFDEMEVRN---VISWTAMIDSCIENGRLD--------DALGVFRSMQLSKHRPDSVAMARMLSVSGQ  526 (681)
Q Consensus       460 ~~-g-~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  526 (681)
                      +. + ++++++++++.+.+.|   ...|+.-...+.+.|.++        ++++.++++.+.. .-|...++.....+.+
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred             HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            54 5 6777777777777633   344444444444444444        6666666666643 3344455555444444


Q ss_pred             ccc-------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH--HHHHhhhCCCCChhhHHHHHHHHHcCCChH
Q 047571          527 LKA-------LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLEC--AKLVFDAVPVKGSITWTAIIEAYGYNDLCQ  597 (681)
Q Consensus       527 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  597 (681)
                      .+.       ++++.+.+++++... +-+...|+.+-..+.+.|+...  -..++-   ...+.+ +.         ...
T Consensus       214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~---~~~~~~-~~---------~~~  279 (349)
T 3q7a_A          214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILP---YTASKL-NP---------DIE  279 (349)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGG---GTC------------------
T ss_pred             ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccc---cccccc-cc---------cch
Confidence            443       344555555544432 2233344333333333332100  000000   000000 00         001


Q ss_pred             HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          598 EALSLFDKMRNGG-----FTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       598 ~a~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +..+...++...+     -.++...+..|++.|...|+.++|.++++.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            1111111221111     134677777788888888888888888887765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.09  E-value=3.3e-05  Score=61.26  Aligned_cols=94  Identities=12%  Similarity=-0.070  Sum_probs=69.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSIC  625 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  625 (681)
                      ...+..+...+...|++++|...+++...  | +...|..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            45566677777888888888888877655  3 45667777777778888888888888877753 33667777777888


Q ss_pred             hccCCHHHHHHHHHHhhh
Q 047571          626 NQAGFADEACRIFNVMSR  643 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~  643 (681)
                      ...|++++|.+.++...+
T Consensus        83 ~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            888888888888877665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.07  E-value=5.2e-05  Score=60.05  Aligned_cols=93  Identities=15%  Similarity=-0.009  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL  661 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  661 (681)
                      .|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+.  .+.+...+..++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            44555556666666666666666666532 335555666666666666666666666665543  111345566666666


Q ss_pred             hhcCCHHHHHHHHHhc
Q 047571          662 TRFGRIEEAHRFREMS  677 (681)
Q Consensus       662 ~~~g~~~~A~~~~~~~  677 (681)
                      .+.|++++|.+.+++.
T Consensus        83 ~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHH
Confidence            6666666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.07  E-value=1.5e-05  Score=67.66  Aligned_cols=127  Identities=12%  Similarity=-0.032  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHH
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHF  616 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~  616 (681)
                      ++..+...|...|++++|...+++...     ++    ..++..+...+...|++++|++.+++..+.    +-++ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            344445555555555555555554443     11    236777888888889999998888886653    1111 145


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhhhcC---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          617 TFKVLLSICNQAGFADEACRIFNVMSRGY---KIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .+..+...+...|++++|.+.+++..+..   +..+. ...+..+..++...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            67778888899999999999988775421   22221 466888888999999999999988764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.07  E-value=2.7e-05  Score=63.02  Aligned_cols=103  Identities=10%  Similarity=-0.077  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG--FTPN----HFTFKVL  621 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~l  621 (681)
                      .+..+...+.+.|++++|...|++...  | +...|+.+..+|...|++++|++.+++.++.+  ..++    ..+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            345566677777777777777776655  3 36678888888889999999999888887632  1111    2467778


Q ss_pred             HHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHH
Q 047571          622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLI  656 (681)
Q Consensus       622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  656 (681)
                      ..++...|++++|++.|++..+.   .|++.....
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~  121 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKK  121 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHH
Confidence            88888999999999999877653   455554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.07  E-value=3.9e-05  Score=60.14  Aligned_cols=99  Identities=13%  Similarity=0.005  Sum_probs=85.9

Q ss_pred             CCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC--chhHHH
Q 047571           69 EKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLEN--NGFLRT  146 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~  146 (681)
                      |.++..+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.  +...+.
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~   80 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA   80 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence            4566778889999999999999999999998764 4477888899999999999999999999999876 44  678888


Q ss_pred             HHHHHhhcC-CChhHHHHhhhhcC
Q 047571          147 KLVKMYTSC-GSFEDAEKVFDESS  169 (681)
Q Consensus       147 ~l~~~~~~~-g~~~~a~~~~~~~~  169 (681)
                      .+..++... |++++|.+.++...
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999 99999999998765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=5.2e-05  Score=76.79  Aligned_cols=119  Identities=4%  Similarity=-0.146  Sum_probs=63.0

Q ss_pred             HHHHHhcCChHHHHHHHhhCCC--C---Cc---------------chHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC
Q 047571          455 MIMYSKCGVLDYSLKLFDEMEV--R---NV---------------ISWTAMIDSCIENGRLDDALGVFRSMQLSKH-RPD  513 (681)
Q Consensus       455 ~~~~~~~g~~~~a~~~~~~~~~--~---~~---------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~  513 (681)
                      ...+.+.|++++|++.|.++.+  +   +.               ..+..+...|...|++++|.+.+.++...-- .++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3456677888888888877653  1   10               1256677778888888888888877654211 112


Q ss_pred             HH----HHHHHHHHhccccchHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHhh
Q 047571          514 SV----AMARMLSVSGQLKALKLGKEIHGQVLKK----DFAS-VPFVAAENIKMYGMCGFLECAKLVFD  573 (681)
Q Consensus       514 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~  573 (681)
                      ..    ....+-..+...|+.+.+..++......    +..+ -..++..+...|...|++++|..+++
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  159 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN  159 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            11    1122222334456666776666655431    1111 13334444444444444444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.06  E-value=2.3e-05  Score=62.78  Aligned_cols=92  Identities=9%  Similarity=-0.221  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL  661 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~  661 (681)
                      +..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|++.+++..+.   .| +...+..+..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence            4445555666677777777777666642 335666666666677777777777777666543   33 245666666677


Q ss_pred             hhcCCHHHHHHHHHhcc
Q 047571          662 TRFGRIEEAHRFREMSS  678 (681)
Q Consensus       662 ~~~g~~~~A~~~~~~~~  678 (681)
                      .+.|++++|++.+++..
T Consensus        96 ~~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           96 TNEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            77777777776666543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.06  E-value=3.2e-05  Score=62.47  Aligned_cols=92  Identities=9%  Similarity=-0.047  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDI  660 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~  660 (681)
                      .|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|++.++...+.   .| +...|..+..+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~   81 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence            45666677777788888888887777743 346677777777777888888888877777653   23 35677777777


Q ss_pred             HhhcCCHHHHHHHHHhc
Q 047571          661 LTRFGRIEEAHRFREMS  677 (681)
Q Consensus       661 ~~~~g~~~~A~~~~~~~  677 (681)
                      +...|++++|.+.+++.
T Consensus        82 ~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           82 QIAVKEYASALETLDAA   98 (126)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHH
Confidence            88888888887777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.06  E-value=4.8e-05  Score=62.45  Aligned_cols=116  Identities=9%  Similarity=-0.142  Sum_probs=86.4

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047571          547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLS  623 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  623 (681)
                      .++..+..+...+...|++++|...|++...  | +...|..+...+...|++++|+..+++..+.+ +.+...+..+..
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            4577788888888899999999988887665  3 36678888888888999999999999888853 446788888888


Q ss_pred             HHhccCCHHHHHHHHHHhhhcC---CCCCChhHHHHHHHHHhh
Q 047571          624 ICNQAGFADEACRIFNVMSRGY---KIEALEEHYLIMIDILTR  663 (681)
Q Consensus       624 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~  663 (681)
                      ++...|++++|++.|+...+..   ....+......+..+..+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999888776531   122234555555444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.06  E-value=3.9e-05  Score=74.32  Aligned_cols=143  Identities=8%  Similarity=-0.122  Sum_probs=97.2

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571          478 NVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK  557 (681)
Q Consensus       478 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  557 (681)
                      +...|..+...|.+.|++++|+..|++..+..  |+...          . ..+.+..+-.        .....+..+..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~-~~~~~~~~~~--------~~~~~~~nla~  204 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS----------F-SNEEAQKAQA--------LRLASHLNLAM  204 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC----------C-CSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc----------C-ChHHHHHHHH--------HHHHHHHHHHH
Confidence            34567777778888888888888888877643  22100          0 0000000000        01345666677


Q ss_pred             HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571          558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      +|.+.|++++|...++++..   .+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.|+.++|
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776655   346678888899999999999999999998853 34778888899999999999988


Q ss_pred             -HHHHHHhh
Q 047571          635 -CRIFNVMS  642 (681)
Q Consensus       635 -~~~~~~~~  642 (681)
                       ...+..|.
T Consensus       284 ~~~~~~~~~  292 (336)
T 1p5q_A          284 EKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence             44666654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.06  E-value=4e-05  Score=65.40  Aligned_cols=95  Identities=9%  Similarity=-0.023  Sum_probs=83.5

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI  658 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~  658 (681)
                      ...|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.   .| +...|..+.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg   86 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence            4567888899999999999999999999853 448889999999999999999999999998874   34 478899999


Q ss_pred             HHHhhcCCHHHHHHHHHhcc
Q 047571          659 DILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       659 ~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .+|.+.|++++|++.+++..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHH
Confidence            99999999999999998753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.05  E-value=0.0046  Score=58.82  Aligned_cols=251  Identities=12%  Similarity=0.039  Sum_probs=150.7

Q ss_pred             HHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc-C-C
Q 047571          355 DMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNG-RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL-K-A  428 (681)
Q Consensus       355 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~-~  428 (681)
                      ....+.+..++|+++++.+..-   +..+|+.--..+...| .++++++.++.+..... -+...++.--..+... + +
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence            3334445567899999888753   5567787777888888 59999999999998643 2555565555555554 5 7


Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--------HHHHHHhhCCC---CCcchHHHHHHHHHhcCC---
Q 047571          429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLD--------YSLKLFDEMEV---RNVISWTAMIDSCIENGR---  494 (681)
Q Consensus       429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~---~~~~~~~~li~~~~~~~~---  494 (681)
                      ++++.++++.+.+.. +-+...|+--...+.+.|.++        ++++.++++.+   .|...|+.....+.+.++   
T Consensus       141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence            899999999988754 446666665555555555555        88888887765   466778887777777776   


Q ss_pred             ----hhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHH--HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          495 ----LDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKL--GKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       495 ----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                          ++++++.++++.... +-|...+..+-..+.+.|....  -..++=   ..+...++. ..         .-.+.+
T Consensus       220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~---~~~~~~~~~-~~---------~~~~~~  285 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILP---YTASKLNPD-IE---------TVEAFG  285 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGG---GTC------------------------
T ss_pred             chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccc---ccccccccc-ch---------hHHHHH
Confidence                688999998888753 3445555554444443332200  000000   000000000 00         000111


Q ss_pred             HHHhhhC-----CCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 047571          569 KLVFDAV-----PVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLL  622 (681)
Q Consensus       569 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~  622 (681)
                      ..++..-     ..+....+.-++..|...|+.++|.++++.+.+. ..| ...-|...+
T Consensus       286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~  344 (349)
T 3q7a_A          286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR  344 (349)
T ss_dssp             CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred             HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence            1111111     0134556777888888888889999999988754 344 344444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.04  E-value=3.4e-05  Score=62.54  Aligned_cols=115  Identities=11%  Similarity=-0.041  Sum_probs=70.9

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY  559 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  559 (681)
                      ..+..+...+...|++++|...+++..... +.+...                                   +..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------------------------------~~~~a~~~   56 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVY-----------------------------------FCNRAAAY   56 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHH-----------------------------------HHHHHHHH
Confidence            345555556666666666666666665532 223334                                   44444444


Q ss_pred             HhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 047571          560 GMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFA  631 (681)
Q Consensus       560 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~  631 (681)
                      ...|++++|...+++...  | +...|..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus        57 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           57 SKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            455555555555444333  2 24567777888888899999999998888753 34677777777777776653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=9.5e-05  Score=61.50  Aligned_cols=108  Identities=9%  Similarity=-0.115  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLL  622 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~  622 (681)
                      ...+..+...+...|++++|...|++...  |+    ...|..+...|...|++++|+..+++..+.. +.+...+..+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence            44555566666666777777776666554  43    4567777888888888888888888888752 33677788888


Q ss_pred             HHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH
Q 047571          623 SICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDI  660 (681)
Q Consensus       623 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~  660 (681)
                      .++...|++++|.+.|++..+.   .|+ ...+..+..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~  142 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSL---EPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHH
Confidence            8888888999998888877764   333 3444444444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.00  E-value=3.8e-05  Score=63.05  Aligned_cols=94  Identities=5%  Similarity=-0.138  Sum_probs=48.7

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      ...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++...+. . +.+...+..+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~   85 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLGQ   85 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHHH
Confidence            3445555555555555555555555555532 224455555555555555555555555555442 1 112445555555


Q ss_pred             HHhhcCCHHHHHHHHHh
Q 047571          660 ILTRFGRIEEAHRFREM  676 (681)
Q Consensus       660 ~~~~~g~~~~A~~~~~~  676 (681)
                      +|...|++++|.+.+++
T Consensus        86 ~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           86 CQLEMESYDEAIANLQR  102 (137)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHH
Confidence            55555555555555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.96  E-value=2.4e-05  Score=63.47  Aligned_cols=108  Identities=9%  Similarity=-0.094  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 047571          551 VAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF--TPN----HFTFKVL  621 (681)
Q Consensus       551 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~l  621 (681)
                      .+..+...+...|++++|...+++...   .+...+..+...+...|++++|+..+++..+...  .++    ..++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            344455556666666666666665444   2355667777777778888888888887776421  112    6677778


Q ss_pred             HHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHH
Q 047571          622 LSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDIL  661 (681)
Q Consensus       622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  661 (681)
                      ..++...|++++|.+.++...+.   .|+......+..+.
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~  122 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence            88888888888888888877764   33445555444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.95  E-value=4.5e-05  Score=67.51  Aligned_cols=87  Identities=11%  Similarity=-0.043  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID  659 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~  659 (681)
                      ..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|++.|+...+.   .| +...+..+..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence            567778888888999999999999888853 447788888888899999999999999887764   33 3667788888


Q ss_pred             HHhhcCCHHHHH
Q 047571          660 ILTRFGRIEEAH  671 (681)
Q Consensus       660 ~~~~~g~~~~A~  671 (681)
                      ++...|+.+++.
T Consensus       165 ~~~~~~~~~~~~  176 (198)
T 2fbn_A          165 CVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH
Confidence            888777777666

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.93  E-value=0.00012  Score=60.78  Aligned_cols=96  Identities=8%  Similarity=-0.127  Sum_probs=82.8

Q ss_pred             ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHH
Q 047571          579 GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN----HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHY  654 (681)
Q Consensus       579 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  654 (681)
                      +...+..+...+...|++++|++.|++..+.  .|+    ...+..+..++...|++++|++.++...+.  .+.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence            4567888899999999999999999999985  565    678888999999999999999999988764  12246788


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          655 LIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       655 ~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ..+..+|...|++++|.+.+++..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.92  E-value=7.1e-05  Score=60.63  Aligned_cols=97  Identities=10%  Similarity=0.002  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC-CCC----hhHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKI-EAL----EEHYL  655 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~  655 (681)
                      ..|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|..+++...+.... .++    ...+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            467788889999999999999999999863 557888999999999999999999999988764211 122    67889


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhcc
Q 047571          656 IMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       656 ~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .++.++.+.|++++|.+.+++..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.00027  Score=71.46  Aligned_cols=189  Identities=14%  Similarity=-0.008  Sum_probs=131.2

Q ss_pred             HHHhhccCChhHHHHHHHHHHHhCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC
Q 047571          420 IPVCSQLKALNHGKEIHAYAVKNQFLPNV----------------SIITSLMIMYSKCGVLDYSLKLFDEMEV-----RN  478 (681)
Q Consensus       420 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~  478 (681)
                      ...+.+.|++++|.+.|..+.+.......                ..+..+...|.+.|++++|.+.+..+..     ++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            34567889999999999999885432211                2367789999999999999999988764     11


Q ss_pred             c----chHHHHHHHHHhcCChhHHHHHHHHhHh----CCCCCC-HHHHHHHHHHhccccchHHHHHHHHHHHHc--CCC-
Q 047571          479 V----ISWTAMIDSCIENGRLDDALGVFRSMQL----SKHRPD-SVAMARMLSVSGQLKALKLGKEIHGQVLKK--DFA-  546 (681)
Q Consensus       479 ~----~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-  546 (681)
                      .    ...+.+-..+...|++++|..++++...    .+..+. ..++..+...+...|++++|..++..+...  +.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    1233333444567899999999988754    333443 446778889999999999999999987753  111 


Q ss_pred             -C-ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC-----hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          547 -S-VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG-----SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       547 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                       + ...++..+++.|...|++++|..++++...     ++     ...+..+...+...|++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             1 145666777777777888877777765543     11     23455555666667777777777777655

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.89  E-value=2.7e-05  Score=79.36  Aligned_cols=115  Identities=12%  Similarity=-0.059  Sum_probs=81.1

Q ss_pred             HHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047571          558 MYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      .+.+.|++++|...++++..  | +..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            34455666666666665544  3 35678888888889999999999999988853 34678888888999999999999


Q ss_pred             HHHHHHhhhcCCCCCChhHHHHHHHH--HhhcCCHHHHHHHHH
Q 047571          635 CRIFNVMSRGYKIEALEEHYLIMIDI--LTRFGRIEEAHRFRE  675 (681)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  675 (681)
                      ++.+++..+...-  +...+..+..+  +.+.|++++|++.++
T Consensus        94 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999988764222  23455555555  888899999998887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.88  E-value=0.00014  Score=58.78  Aligned_cols=90  Identities=13%  Similarity=-0.084  Sum_probs=67.2

Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV--KGS----ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN---HFTFKVLLSI  624 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~  624 (681)
                      .+...+...|++++|...|+.+..  |+.    ..+..+..++...|++++|+..|++..+.. +.+   ...+..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            345556667777777777766554  332    367777888888999999999999888753 223   6678888888


Q ss_pred             HhccCCHHHHHHHHHHhhhc
Q 047571          625 CNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +...|++++|.+.|+.+.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            89999999999999988775

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.87  E-value=5.4e-05  Score=60.52  Aligned_cols=91  Identities=15%  Similarity=0.010  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA  628 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  628 (681)
                      +..+...+.+.|++++|...++++..  | +...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            44566677888888888888887766  4 46788889999999999999999999999853 34778899999999999


Q ss_pred             CCHHHHHHHHHHhhh
Q 047571          629 GFADEACRIFNVMSR  643 (681)
Q Consensus       629 g~~~~A~~~~~~~~~  643 (681)
                      |++++|++.++...+
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.87  E-value=0.00015  Score=58.56  Aligned_cols=95  Identities=13%  Similarity=-0.101  Sum_probs=77.0

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH---FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMI  658 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~  658 (681)
                      +..+...+...|++++|+..|++..+.. +.+.   ..+..+..++.+.|++++|++.++.+.+.....+. ...+..++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            4456677889999999999999998853 2233   57888999999999999999999998875222221 56788899


Q ss_pred             HHHhhcCCHHHHHHHHHhcc
Q 047571          659 DILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       659 ~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .++.+.|++++|.+.++++.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999998763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.87  E-value=9.6e-05  Score=74.99  Aligned_cols=88  Identities=11%  Similarity=-0.068  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID  659 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~  659 (681)
                      ..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+.   .| +...+..+..
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~  393 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence            456666777777777777777777777642 335666777777777777777777777766542   33 2456666777


Q ss_pred             HHhhcCCHHHHHH
Q 047571          660 ILTRFGRIEEAHR  672 (681)
Q Consensus       660 ~~~~~g~~~~A~~  672 (681)
                      ++.+.|+.++|.+
T Consensus       394 ~~~~~~~~~~a~~  406 (457)
T 1kt0_A          394 CQKKAKEHNERDR  406 (457)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777776666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.86  E-value=0.00016  Score=59.64  Aligned_cols=94  Identities=13%  Similarity=-0.095  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhccCCHHHHHHHHHHhhhc----
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-------------HFTFKVLLSICNQAGFADEACRIFNVMSRG----  644 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  644 (681)
                      .+......+...|++++|+..|++..+.  .|+             ...|..+..++.+.|++++|+..+++..+.    
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            3445566667778888888888877763  333             237888888888888888888888877652    


Q ss_pred             CCCCCC-hhHH----HHHHHHHhhcCCHHHHHHHHHhc
Q 047571          645 YKIEAL-EEHY----LIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       645 ~~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ..+.|+ ...|    .....+|...|++++|++.+++.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            233665 5667    78888888889999998888764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.84  E-value=3.3e-05  Score=68.37  Aligned_cols=120  Identities=11%  Similarity=-0.075  Sum_probs=86.8

Q ss_pred             HHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCH----------------H
Q 047571          556 IKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNH----------------F  616 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----------------~  616 (681)
                      +......|+++++.+.++....   .....+..+...+...|++++|+..|++..+.. +.+.                .
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHH
Confidence            3344455666666666654333   124467778888999999999999999999852 2232                7


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          617 TFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      .+..+..+|.+.|++++|++.++...+.  .+.+...+..+..+|...|++++|.+.+++..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            8888999999999999999999998874  22347889999999999999999999998753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.84  E-value=2e-05  Score=61.95  Aligned_cols=96  Identities=9%  Similarity=-0.048  Sum_probs=78.4

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-------hh
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-------EE  652 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~  652 (681)
                      ...|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.++...+.   .|+       ..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~   79 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence            3467778888999999999999999998853 447888999999999999999999999988763   343       55


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          653 HYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       653 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      .+..+..++...|+.++|.+.++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~~~~  106 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDELPE  106 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence            677788888888888888887777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.76  E-value=4.5e-05  Score=60.60  Aligned_cols=80  Identities=5%  Similarity=-0.052  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      ..|..+...|...|++++|+..+++..+.. +-+...+..+..++...|++++|++.+++..+.....|+...|...+..
T Consensus        28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            467778888888899999999999888853 4467888888888999999999999988877653333333333333333


Q ss_pred             H
Q 047571          661 L  661 (681)
Q Consensus       661 ~  661 (681)
                      |
T Consensus       107 ~  107 (117)
T 3k9i_A          107 Y  107 (117)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.75  E-value=0.00015  Score=70.96  Aligned_cols=89  Identities=7%  Similarity=-0.164  Sum_probs=76.1

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI  658 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~  658 (681)
                      ...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|++.|++..+.   .| +...+..+.
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~  348 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence            4578889999999999999999999999853 447888999999999999999999999988764   34 467788888


Q ss_pred             HHHhhcCCHHHHHH
Q 047571          659 DILTRFGRIEEAHR  672 (681)
Q Consensus       659 ~~~~~~g~~~~A~~  672 (681)
                      .++.+.|+.++|.+
T Consensus       349 ~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          349 KVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888898888765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.73  E-value=3.7e-05  Score=61.09  Aligned_cols=83  Identities=14%  Similarity=0.068  Sum_probs=67.0

Q ss_pred             cCCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHH
Q 047571          592 YNDLCQEALSLFDKMRNGGF-TP-NHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIE  668 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~  668 (681)
                      ..|++++|+..|++..+.+. .| +...+..+..+|...|++++|++.+++..+.   .| +...+..+..+|.+.|+++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~   78 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYE   78 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHH
Confidence            46889999999999998541 13 5678899999999999999999999998874   33 3788999999999999999


Q ss_pred             HHHHHHHhc
Q 047571          669 EAHRFREMS  677 (681)
Q Consensus       669 ~A~~~~~~~  677 (681)
                      +|++.+++.
T Consensus        79 ~A~~~~~~a   87 (117)
T 3k9i_A           79 QGVELLLKI   87 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.71  E-value=0.00015  Score=61.28  Aligned_cols=132  Identities=14%  Similarity=0.029  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHR-PDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY  559 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  559 (681)
                      ++..+...+...|++++|+..+++..+.... ++...                               ....+..+...|
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~   59 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------------------------------ERIAYSNLGNAY   59 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH-------------------------------HHHHHHHHHHHH
Confidence            5666677777788888888888776653110 11100                               012333344444


Q ss_pred             HhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHH
Q 047571          560 GMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYGYNDLCQEALSLFDKMRNG----GFTP-NHFTFKVLLSIC  625 (681)
Q Consensus       560 ~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~  625 (681)
                      ...|++++|...+++...     .+    ...+..+...+...|++++|.+.+++..+.    +.++ ...++..+...+
T Consensus        60 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           60 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence            445555555544444332     11    335677788888899999999888887643    2112 245678888899


Q ss_pred             hccCCHHHHHHHHHHhhh
Q 047571          626 NQAGFADEACRIFNVMSR  643 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~  643 (681)
                      ...|++++|.+.+++..+
T Consensus       140 ~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          140 TALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHH
Confidence            999999999999987755

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.67  E-value=0.00021  Score=60.63  Aligned_cols=95  Identities=11%  Similarity=-0.098  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCCC---------------------ChhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPVK---------------------GSITWTAIIEAYGYNDLCQEALSLFDKMR  607 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  607 (681)
                      ...+......+.+.|++++|...|.+...-                     +...|..+..+|...|++++|+..+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456677788888899999999888766541                     13567788888888999999999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          608 NGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       608 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +.. +.+...|..+..+|...|++++|++.|+...+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            853 447788888889999999999999999877653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.66  E-value=9.9e-05  Score=71.50  Aligned_cols=146  Identities=9%  Similarity=-0.076  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcC
Q 047571          514 SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYN  593 (681)
Q Consensus       514 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~  593 (681)
                      ...+..+...+.+.|+++.|...|+..++..  |+..       .+...|+.+++...+.      ...|..+..+|.+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~------~~~~~nla~~~~~~  243 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence            4456677778888899999999988877643  2211       1223334444433332      23788899999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHH-hhcCCHHHHH
Q 047571          594 DLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDIL-TRFGRIEEAH  671 (681)
Q Consensus       594 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~g~~~~A~  671 (681)
                      |++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+   +.|+ ...+..|..+. ...+..+++.
T Consensus       244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998853 44788999999999999999999999997765   3443 45566666553 4456777888


Q ss_pred             HHHHhcc
Q 047571          672 RFREMSS  678 (681)
Q Consensus       672 ~~~~~~~  678 (681)
                      +++.+|.
T Consensus       320 ~~~~~~l  326 (338)
T 2if4_A          320 EMYKGIF  326 (338)
T ss_dssp             -------
T ss_pred             HHHHHhh
Confidence            8887764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.64  E-value=0.00016  Score=73.67  Aligned_cols=90  Identities=7%  Similarity=-0.202  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 047571          549 PFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSI-  624 (681)
Q Consensus       549 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-  624 (681)
                      ...+..+..+|.+.|++++|...++++..  | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..+ 
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~  118 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34444444444444444444444444333  2 23455555666666666666666666665532 1133333334333 


Q ss_pred             -HhccCCHHHHHHHHH
Q 047571          625 -CNQAGFADEACRIFN  639 (681)
Q Consensus       625 -~~~~g~~~~A~~~~~  639 (681)
                       +.+.|++++|++.++
T Consensus       119 ~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          119 KIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhcccc
Confidence             555566666666665

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.62  E-value=3.7e-05  Score=74.08  Aligned_cols=430  Identities=11%  Similarity=0.048  Sum_probs=228.0

Q ss_pred             hHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 047571          143 FLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAG  222 (681)
Q Consensus       143 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  222 (681)
                      .+|..|..+..+.+++.+|++-|  ++..|+..|..++.+..+.|  .+++-+..+...++..-.|  ..=+.|+-+|++
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~--~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk  128 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSG--NWEELVKYLQMARKKARES--YVETELIFALAK  128 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSS--CCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred             cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence            34444555555555444444433  22334444555555555555  5555555544433332222  222345555665


Q ss_pred             cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccC------------------------CCChhh
Q 047571          223 ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETG------------------------DRDIVV  278 (681)
Q Consensus       223 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~  278 (681)
                      .+++.+-++++.       .|+..-...+.+-|...|.++.|.-+|..+.                        ..++.+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            555554443331       2343334445555555555555555555443                        136778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHH
Q 047571          279 WGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYC  358 (681)
Q Consensus       279 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  358 (681)
                      |-.+-.+|...+.+.-|.-+--.+.-   .|  .....++..|...|.+++...+++.....  -......|+.|.-.|+
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYs  274 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYS  274 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHH
Confidence            99999999999988766544333321   12  22334556677888888888888876632  3345667777777777


Q ss_pred             hcCCHHHHHHHHhhcCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc--------------CcCCCH
Q 047571          359 KCRDMNSAWRVFYETEER-----------NEILWTALMSGYVSNGRLEQALRSIAWMQQE--------------GFRPDV  413 (681)
Q Consensus       359 ~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------g~~p~~  413 (681)
                      +- +.++..+.++..-.+           ....|.-++-.|++-.+++.|...   |.++              .-..|.
T Consensus       275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~  350 (624)
T 3lvg_A          275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANV  350 (624)
T ss_dssp             SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred             hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchH
Confidence            65 455555555443332           455788888888888888877533   2221              012233


Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcch-HHHHHHHHHhc
Q 047571          414 VTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVIS-WTAMIDSCIEN  492 (681)
Q Consensus       414 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~  492 (681)
                      ..|...|.-|.... +..-.+++.-+. ..+.+     +..+..+.+.|++.-...++......|... -.++-..|...
T Consensus       351 EiyYKAi~FYL~e~-P~lL~DLL~vL~-prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE  423 (624)
T 3lvg_A          351 ELYYRAIQFYLEFK-PLLLNDLLMVLS-PRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE  423 (624)
T ss_dssp             HHHHHHHHHHTTSC-CTTSHHHHHHHC-TTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC-hHHHHHHHHhcc-ccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            34444444333321 111111111110 00011     123344444555544444444444444433 33445556666


Q ss_pred             CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571          493 GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVF  572 (681)
Q Consensus       493 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  572 (681)
                      .+++                   +...-++.|..-..+..|.++-.       ..-...-..-...|.+.++|+++..+.
T Consensus       424 EDy~-------------------~LR~SId~ydNFD~i~LA~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~  477 (624)
T 3lvg_A          424 EDYQ-------------------ALRTSIDAYDNFDNISLAQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELC  477 (624)
T ss_dssp             TCCH-------------------HHHHTTSSCCCSCTTHHHHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred             hhHH-------------------HHHHHHHHhccccHHHHHHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHH
Confidence            6554                   22222333334444444443321       112233344566788888888888776


Q ss_pred             hhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047571          573 DAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRI  637 (681)
Q Consensus       573 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~  637 (681)
                      ++=.     .|.-.|......|+.+-|.++++-.++.|   +..+|...+-.|...=+++-++++
T Consensus       478 KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          478 KKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             STTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             Hhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence            5433     23334455566888888888888888755   556677777777777777777665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.61  E-value=0.0076  Score=57.00  Aligned_cols=135  Identities=7%  Similarity=-0.046  Sum_probs=77.3

Q ss_pred             ccCCh-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 047571          425 QLKAL-NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV----------LDYSLKLFDEMEV---RNVISWTAMIDSCI  490 (681)
Q Consensus       425 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~li~~~~  490 (681)
                      +.|.+ ++|..+...+...+ +-+..+++.--..+...+.          ++++..+++.+..   .+..+|+.-...+.
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            44544 46788888877654 2233344433233322222          4566666666654   34456666555666


Q ss_pred             hcC--ChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccc-hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 047571          491 ENG--RLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKA-LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMC  562 (681)
Q Consensus       491 ~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  562 (681)
                      +.|  .+++++.+++++.+.. +-|...|+.-...+...|. ++++.+.++.+++.++ .+...|+....++.+.
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHH
T ss_pred             ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHh
Confidence            666  3677888887777754 4455666665555556666 4677777777776652 3455555554444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.59  E-value=0.00026  Score=58.41  Aligned_cols=62  Identities=18%  Similarity=0.045  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCC-CHHHH----HHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNG-----GFTP-NHFTF----KVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .|..+..++.+.|++++|+..+++.++.     .+.| +...|    .....++...|++++|++.|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            7888999999999999999999998883     1166 45678    8999999999999999999998865

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.53  E-value=0.021  Score=54.04  Aligned_cols=204  Identities=10%  Similarity=0.022  Sum_probs=114.0

Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCC-hhHHHHHH
Q 047571          429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG--VLDYSLKLFDEMEV---RNVISWTAMIDSCIENGR-LDDALGVF  502 (681)
Q Consensus       429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~  502 (681)
                      ++++..+++.+.... +-+..+|+.-...+.+.|  .++++..+++.+.+   .|...|+.-...+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            466777777777654 445666666666666666  37788888887765   455666666666677777 58888888


Q ss_pred             HHhHhCCCCCCHHHHHHHHHHhccc--------------cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          503 RSMQLSKHRPDSVAMARMLSVSGQL--------------KALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       503 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                      +++.+.. +-|...|+.....+...              +.++++.+.+...+... +-+...|+.+-..+.+.-.    
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~----  242 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSG----  242 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSC----
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccC----
Confidence            8888764 34555555444433332              34556666666655543 2234444333333322200    


Q ss_pred             HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH---HHhccCCHHHHHHHHHHhhhc
Q 047571          569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLS---ICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~  644 (681)
                              .++. +       -...+.++++++.++++.+.  .| +..++..++.   +....|..++...+++++.+-
T Consensus       243 --------~~~~-~-------~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          243 --------RCEL-S-------VEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             --------GGGC-C-------HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             --------cccc-c-------hHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                    0000 0       00113467778888888773  45 3343333322   223457777888888877653


Q ss_pred             CCCCCC-hhHHHHHHHH
Q 047571          645 YKIEAL-EEHYLIMIDI  660 (681)
Q Consensus       645 ~~~~~~-~~~~~~l~~~  660 (681)
                         .|. ..-|..+...
T Consensus       305 ---Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          305 ---DPMRAAYLDDLRSK  318 (331)
T ss_dssp             ---CGGGHHHHHHHHHH
T ss_pred             ---CcchhhHHHHHHHH
Confidence               443 3444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.50  E-value=0.0003  Score=71.12  Aligned_cols=98  Identities=8%  Similarity=-0.024  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCC-C
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNG-----G-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKI-E  648 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~  648 (681)
                      .+++.|..+|...|++++|+.++++..+-     | -.| ...+++.|...|...|++++|..++++..+    .+|. .
T Consensus       352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H  431 (490)
T 3n71_A          352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH  431 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            46777777777778887777777765531     2 123 245677888888888888888888876643    2232 2


Q ss_pred             CC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          649 AL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       649 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      |+ ..+...+..++...|++++|..++.++.
T Consensus       432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 4556677777778888888888777653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.46  E-value=0.00061  Score=69.07  Aligned_cols=142  Identities=13%  Similarity=-0.058  Sum_probs=92.8

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047571          479 VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM  558 (681)
Q Consensus       479 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  558 (681)
                      ...|..+...|.+.|++++|+..|++..+..  |+...+          . .+...+. .       ......|..+..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~~~-~-------~~~~~~~~nla~~  326 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESKAS-E-------SFLLAAFLNLAMC  326 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHHHH-H-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHHHH-H-------HHHHHHHHHHHHH
Confidence            3467777888888899999999888887632  221000          0 0000000 0       0013456667777


Q ss_pred             HHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047571          559 YGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEA  634 (681)
Q Consensus       559 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A  634 (681)
                      |.+.|++++|...++++..   .+...|..+..+|...|++++|+..|++..+.  .| +...+..+..++.+.|+.+++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776665   34667888888899999999999999999885  45 667788888888888888877


Q ss_pred             HH-HHHHhhh
Q 047571          635 CR-IFNVMSR  643 (681)
Q Consensus       635 ~~-~~~~~~~  643 (681)
                      .+ .+..|..
T Consensus       405 ~~~~~~~~f~  414 (457)
T 1kt0_A          405 DRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHh
Confidence            64 4555533

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00021  Score=55.83  Aligned_cols=97  Identities=13%  Similarity=0.054  Sum_probs=78.7

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCc------hhH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENN------GFL  144 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~  144 (681)
                      +...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+.. +.+      ...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence            34567888899999999999999999998764 4578889999999999999999999999998765 223      556


Q ss_pred             HHHHHHHhhcCCChhHHHHhhhhcC
Q 047571          145 RTKLVKMYTSCGSFEDAEKVFDESS  169 (681)
Q Consensus       145 ~~~l~~~~~~~g~~~~a~~~~~~~~  169 (681)
                      +..+..++...|+.+.|.+.+++++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence            6667777777788888877777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.43  E-value=0.00095  Score=56.47  Aligned_cols=98  Identities=14%  Similarity=-0.093  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHc--------C---------CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 047571          515 VAMARMLSVSGQLKALKLGKEIHGQVLKK--------D---------FASVPFVAAENIKMYGMCGFLECAKLVFDAVPV  577 (681)
Q Consensus       515 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  577 (681)
                      ..+......+.+.|+++.|...|...++.        .         -+....++..+..+|.+.|++++|...++++..
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            35566667777888888888888877764        0         012245677778888888888888888887665


Q ss_pred             --C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047571          578 --K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN  614 (681)
Q Consensus       578 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~  614 (681)
                        | +...|..+..+|...|++++|+..|++..+.  .|+
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~  129 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPA  129 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGG
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCC
Confidence              3 3667777888888888888888888888874  453

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.42  E-value=0.00022  Score=56.26  Aligned_cols=65  Identities=11%  Similarity=0.031  Sum_probs=51.1

Q ss_pred             ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          579 GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       579 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|+...+.
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35567778888888888888888888888753 346777888888888888888888888877653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.39  E-value=3.9e-06  Score=80.65  Aligned_cols=275  Identities=12%  Similarity=0.087  Sum_probs=159.2

Q ss_pred             ChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHHHHH
Q 047571          157 SFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTHALL  236 (681)
Q Consensus       157 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  236 (681)
                      +++.|.+.-++...|  ..|..+..+....+  .+.+|++.|-+      .-|...|.-++.++.+.|.+++-...+...
T Consensus        40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~--~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~Ma  109 (624)
T 3lvg_A           40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKG--MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA  109 (624)
T ss_dssp             CSTTTTTSSSSCCCC--CCSSSHHHHTTTSS--SCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred             ccHHHHHHHHHhCCc--cHHHHHHHHHHccC--chHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            344444444433333  23556666655555  55554443322      123344555555555555555544444433


Q ss_pred             HHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 047571          237 IKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTI  316 (681)
Q Consensus       237 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  316 (681)
                      ++..                                 ++...=+.|+-+|++.++..+..+++       -.||..-...
T Consensus       110 Rk~~---------------------------------ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~  149 (624)
T 3lvg_A          110 RKKA---------------------------------RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQ  149 (624)
T ss_dssp             STTC---------------------------------CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHH
T ss_pred             HHHh---------------------------------cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHH
Confidence            3322                                 23333344445555554444322222       1356666666


Q ss_pred             HHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHH
Q 047571          317 LLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQ  396 (681)
Q Consensus       317 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  396 (681)
                      +.+-|...|.++.|.-+|..+...          ..|..++.+.|++..|.+.-++  ..++.+|..+-.+|...+.+.-
T Consensus       150 VGDrcf~e~lYeAAKilys~isN~----------akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrL  217 (624)
T 3lvg_A          150 VGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRL  217 (624)
T ss_dssp             HHHHHHHSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTT
T ss_pred             HHHHHHHccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHH
Confidence            667777777777777777665544          3455556666776666543222  2367789999999999998876


Q ss_pred             HHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 047571          397 ALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV  476 (681)
Q Consensus       397 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  476 (681)
                      |...--.+.-     ...-...++..|...|.+++-..+++.-.... +....+|+-|.-.|+|- ++++..+.++..-.
T Consensus       218 AqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s  290 (624)
T 3lvg_A          218 AQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS  290 (624)
T ss_dssp             TTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred             HHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence            6543333321     22233456777889999999888888765322 56778888888888875 45666666554332


Q ss_pred             ----C-------CcchHHHHHHHHHhcCChhHHHH
Q 047571          477 ----R-------NVISWTAMIDSCIENGRLDDALG  500 (681)
Q Consensus       477 ----~-------~~~~~~~li~~~~~~~~~~~A~~  500 (681)
                          |       ....|.-++-.|+.-.++|.|..
T Consensus       291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence                2       44578888888888888887653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.38  E-value=0.00043  Score=52.89  Aligned_cols=84  Identities=15%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      ...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|++.+++..+...-.++......+..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~   85 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD   85 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence            4567778888888888888888888888753 336677888888888888888888888877653222334444444444


Q ss_pred             HHhhc
Q 047571          660 ILTRF  664 (681)
Q Consensus       660 ~~~~~  664 (681)
                      .+.+.
T Consensus        86 ~l~~~   90 (100)
T 3ma5_A           86 AKLKA   90 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            44433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.38  E-value=0.00077  Score=53.04  Aligned_cols=79  Identities=15%  Similarity=0.003  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      ++|+..|++..+.. +.+...+..+...+...|++++|++.++...+. . +.+...|..+..+|...|++++|...+++
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-D-PTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35788889988853 457889999999999999999999999998874 1 22467899999999999999999999987


Q ss_pred             cc
Q 047571          677 SS  678 (681)
Q Consensus       677 ~~  678 (681)
                      ..
T Consensus        79 al   80 (115)
T 2kat_A           79 GL   80 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.35  E-value=0.00071  Score=68.41  Aligned_cols=132  Identities=5%  Similarity=-0.107  Sum_probs=92.2

Q ss_pred             HHHHhcCChhHHHHHHHHHhhC-----C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh-----CC-CCc-hhHH
Q 047571           80 QRFARQNKLKEALVILDYMDQQ-----G--IPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN-----GL-ENN-GFLR  145 (681)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~  145 (681)
                      ..+..+|++++|+.++++.++.     |  .+....+++.|..+|...|++++|..++++....     |. .|+ ..++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4466899999999999887542     2  1124567899999999999999999999887643     31 232 3578


Q ss_pred             HHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHhhccC
Q 047571          146 TKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNV-YTFSCVIKSFAGAS  224 (681)
Q Consensus       146 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~  224 (681)
                      +.|...|...|++++|+.+++                          +|+.+++...... .|++ .+.+.+-.++...+
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~--------------------------~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMIC--------------------------KAYAILLVTHGPS-HPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH--------------------------HHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHH--------------------------HHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHH
Confidence            889999999999999998775                          3445544433222 2222 24455556666777


Q ss_pred             chhhhHHHHHHHHH
Q 047571          225 ALMQGLKTHALLIK  238 (681)
Q Consensus       225 ~~~~a~~~~~~~~~  238 (681)
                      .+.+|+.++..+.+
T Consensus       450 ~~~~ae~~~~~~~~  463 (490)
T 3n71_A          450 MFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            78888888877765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.34  E-value=0.0018  Score=48.13  Aligned_cols=82  Identities=17%  Similarity=0.097  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      ..|..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|.+.+++..+. . +.+...+..+..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~l~~~   86 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCHHHHHHHHHH
Confidence            466777888888999999999999988753 446788888899999999999999999988764 1 2235667777777


Q ss_pred             HhhcC
Q 047571          661 LTRFG  665 (681)
Q Consensus       661 ~~~~g  665 (681)
                      +.+.|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            76544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.32  E-value=0.00085  Score=65.65  Aligned_cols=136  Identities=7%  Similarity=-0.134  Sum_probs=95.4

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMY  559 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  559 (681)
                      ..+..+...+.+.|++++|++.|++..+.  .+...          .....+.       ..+. -.....++..+..+|
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~~~-~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GAKL-QPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HGGG-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HHHH-HHHHHHHHHHHHHHH
Confidence            35677778888889999999888887652  00000          0000000       0000 011356677788888


Q ss_pred             HhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047571          560 GMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACR  636 (681)
Q Consensus       560 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  636 (681)
                      .+.|++++|...++++..  | +...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999998887776  3 46688889999999999999999999999853 3367778888888888887777655

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.29  E-value=0.0019  Score=52.77  Aligned_cols=87  Identities=8%  Similarity=-0.122  Sum_probs=53.9

Q ss_pred             HHHHHHhcCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 047571          555 NIKMYGMCGFLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ--  627 (681)
Q Consensus       555 l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--  627 (681)
                      +..+|...+..++|...|++... .+...+..|...|..    .+++++|+++|++..+.|   ++..+..|...|..  
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence            44444444444445544444333 334556666666665    677777777777777754   45566667777766  


Q ss_pred             --cCCHHHHHHHHHHhhhc
Q 047571          628 --AGFADEACRIFNVMSRG  644 (681)
Q Consensus       628 --~g~~~~A~~~~~~~~~~  644 (681)
                        .+++++|.++|++..+.
T Consensus       108 g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHC
Confidence              67777888777776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.27  E-value=0.00084  Score=64.91  Aligned_cols=141  Identities=9%  Similarity=-0.068  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      +..+...+.+.|++++|+..|++....  .|+...       +...++.+.+...+.          ...+..+..+|.+
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~  242 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK  242 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence            444555566667777777777766553  333321       122233333222111          1255666666777


Q ss_pred             cCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhccCCHHHHHH
Q 047571          562 CGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSI-CNQAGFADEACR  636 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~-~~~~g~~~~A~~  636 (681)
                      .|++++|...++++..  | +...|..+..+|...|++++|+..|++..+.  .| +...+..+... ....+..+.+.+
T Consensus       243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777766554  3 3556777777777788888888887777663  34 44445555444 234456667777


Q ss_pred             HHHHhhh
Q 047571          637 IFNVMSR  643 (681)
Q Consensus       637 ~~~~~~~  643 (681)
                      .|..|..
T Consensus       321 ~~~~~l~  327 (338)
T 2if4_A          321 MYKGIFK  327 (338)
T ss_dssp             -------
T ss_pred             HHHHhhC
Confidence            7776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.25  E-value=0.0037  Score=50.97  Aligned_cols=110  Identities=10%  Similarity=-0.127  Sum_probs=89.9

Q ss_pred             CChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 047571          493 GRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECA  568 (681)
Q Consensus       493 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a  568 (681)
                      +++++|++.|++..+.| .|+..    +-..|...+.+++|.+.+++..+.|   ++..+..+..+|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            46788899999888887 44443    6666777777888999998888864   67778888888888    7899999


Q ss_pred             HHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHHHHHHhCC
Q 047571          569 KLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLFDKMRNGG  610 (681)
Q Consensus       569 ~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g  610 (681)
                      ...|++..+ .+...+..|...|..    .++.++|+.+|++..+.|
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999988766 557788888888888    899999999999999987

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.04  E-value=0.02  Score=59.37  Aligned_cols=165  Identities=9%  Similarity=-0.038  Sum_probs=101.7

Q ss_pred             hHHHHHHHHhHhCCCCCCH-HHHHHHHHHhccccc----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-
Q 047571          496 DDALGVFRSMQLSKHRPDS-VAMARMLSVSGQLKA----------LKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG-  563 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  563 (681)
                      ++|++.++++...  .|+. ..|+.--.++...|+          ++++..+++.+.+.+ +-+..+|..-..++.+.| 
T Consensus        46 eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           46 ESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            4556666666553  2332 233333333333333          566666666666654 224555666666666666 


Q ss_pred             -CHHHHHHHhhhCCC---CChhhHHHHHHHHHcCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc----------
Q 047571          564 -FLECAKLVFDAVPV---KGSITWTAIIEAYGYND-LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQA----------  628 (681)
Q Consensus       564 -~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------  628 (681)
                       +++++.+.++++.+   .+..+|+.-...+...| .++++++.++++.+.. +-|...|.....++.+.          
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence             55777777776666   44667777777777777 7888888888887753 33677777766665552          


Q ss_pred             ----CCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCH
Q 047571          629 ----GFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRI  667 (681)
Q Consensus       629 ----g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  667 (681)
                          +.+++++++++.....   .| +...|.-+..++.+.|+.
T Consensus       202 ~~~~~~~~eel~~~~~ai~~---~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHH---CSSCSHHHHHHHHHHSCCCCC
T ss_pred             cccHHHHHHHHHHHHHHHhh---CCCCccHHHHHHHHHhcCCCc
Confidence                5578888888777653   34 366677777777776663

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.04  E-value=0.0036  Score=46.34  Aligned_cols=82  Identities=16%  Similarity=0.072  Sum_probs=63.3

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK  150 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  150 (681)
                      ++..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~   85 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            34567778888899999999999999987764 3467788888888999999999999999988775 445566666655


Q ss_pred             Hhhc
Q 047571          151 MYTS  154 (681)
Q Consensus       151 ~~~~  154 (681)
                      ++..
T Consensus        86 ~~~~   89 (91)
T 1na3_A           86 AKQK   89 (91)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.83  E-value=0.0037  Score=47.51  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             CCCCchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 047571           68 HEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRIN  136 (681)
Q Consensus        68 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  136 (681)
                      .|.++.++..+...+.+.|++++|+..|++..+.+ +.+...|..+..++...|++++|...+++..+.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35677888999999999999999999999998875 346778899999999999999999999988765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.81  E-value=0.028  Score=58.32  Aligned_cols=144  Identities=9%  Similarity=-0.007  Sum_probs=112.9

Q ss_pred             chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHhhhCCC---CChhhHHHHHHHHHcCC-
Q 047571          529 ALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGF----------LECAKLVFDAVPV---KGSITWTAIIEAYGYND-  594 (681)
Q Consensus       529 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-  594 (681)
                      ..++|.+.++.+++.+. -+..+|+.-..++...|+          ++++.+.++.+..   .+..+|+.-...+.+.+ 
T Consensus        44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            34677889999888653 245566666666777777          8999999998887   45778888888898989 


Q ss_pred             -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhc-------
Q 047571          595 -LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG-FADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRF-------  664 (681)
Q Consensus       595 -~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-------  664 (681)
                       +++++++.++++.+.. +-|...|..-..++.+.| .++++++.++.+.+.   .| +...|.....++.+.       
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhccccccc
Confidence             7799999999999964 448899999999999999 899999999977653   44 467788777777663       


Q ss_pred             -------CCHHHHHHHHHhc
Q 047571          665 -------GRIEEAHRFREMS  677 (681)
Q Consensus       665 -------g~~~~A~~~~~~~  677 (681)
                             +++++|.+++++.
T Consensus       199 ~~~~~~~~~~~eel~~~~~a  218 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNA  218 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHH
Confidence                   5678888877653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.69  E-value=0.0021  Score=52.88  Aligned_cols=59  Identities=19%  Similarity=0.173  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccC-----------CHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          596 CQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAG-----------FADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       596 ~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      +++|+..|++.++.  .| +...|..+..+|...|           ++++|++.|++..+   +.|+...|..-+.
T Consensus        62 ~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~  132 (158)
T 1zu2_A           62 IQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            45777777777773  44 5667777777777654           67777777776654   3555454543333

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.68  E-value=0.12  Score=56.73  Aligned_cols=150  Identities=11%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             HHhCCChHHHHH-HHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047571          388 YVSNGRLEQALR-SIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDY  466 (681)
Q Consensus       388 ~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  466 (681)
                      ....++++.|.+ ++..+      ++......++..+.+.|..+.|.++.+...            .-.......|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence            345666666655 33111      101122455556666677776665542111            11234456788888


Q ss_pred             HHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 047571          467 SLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA  546 (681)
Q Consensus       467 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  546 (681)
                      |.++.+.+.  +...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++.+.....|  
T Consensus       671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--  737 (814)
T 3mkq_A          671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG--  737 (814)
T ss_dssp             HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence            888877663  456788888888888888888888887753         2333333444455444444433333322  


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHh
Q 047571          547 SVPFVAAENIKMYGMCGFLECAKLVF  572 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~~~a~~~~  572 (681)
                          -++....+|.+.|++++|.+++
T Consensus       738 ----~~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          738 ----KFNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ----chHHHHHHHHHcCCHHHHHHHH
Confidence                1222333444455555554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.64  E-value=0.0088  Score=59.34  Aligned_cols=61  Identities=7%  Similarity=0.028  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhhc----CC-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSRG----YK-IEAL-EEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      .+++.|..+|...|++++|..++++..+.    +| ..|+ ..+++.|..+|...|++++|..++++
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44555555555556655555555554321    11 2232 44455556666666666666655554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.64  E-value=0.09  Score=57.80  Aligned_cols=101  Identities=12%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             HHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHH
Q 047571          356 MYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEI  435 (681)
Q Consensus       356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  435 (681)
                      .....|+++.|.++.+.+.  +...|..+...+.+.++++.|.+.|..+.+         |..+...+...|+.+...++
T Consensus       661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3456788888888876664  456888888888899999988888887643         23344444446666655555


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 047571          436 HAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDE  473 (681)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  473 (681)
                      -+.....|      -++....+|.+.|++++|.+++.+
T Consensus       730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence            54444433      223344455566666666665433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.56  E-value=0.0025  Score=52.41  Aligned_cols=57  Identities=16%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             HHHHHHhhhCCC--CC-hhhHHHHHHHHHcC-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047571          566 ECAKLVFDAVPV--KG-SITWTAIIEAYGYN-----------DLCQEALSLFDKMRNGGFTPNHFTFKVLLSI  624 (681)
Q Consensus       566 ~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  624 (681)
                      ++|...|++...  |+ ..+|..+..+|...           |++++|++.|++.++  +.|+...|...+..
T Consensus        63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            455555555544  32 45677777777665           489999999999999  57876666544443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.52  E-value=0.0074  Score=45.57  Aligned_cols=58  Identities=9%  Similarity=0.017  Sum_probs=44.0

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          586 IIEAYGYNDLCQEALSLFDKMRNGGFTPNHF-TFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       586 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ....+...|++++|+..+++..+.. +.+.. .+..+..++...|++++|++.|+...+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3455667788888888888888753 33566 7888888888888888888888877764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.48  E-value=0.016  Score=57.54  Aligned_cols=87  Identities=8%  Similarity=0.063  Sum_probs=41.4

Q ss_pred             HHcCCChHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhhc----C-CCCCC-hhHHHH
Q 047571          590 YGYNDLCQEALSLFDKMRNGG---FTPN----HFTFKVLLSICNQAGFADEACRIFNVMSRG----Y-KIEAL-EEHYLI  656 (681)
Q Consensus       590 ~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~-~~~~~~  656 (681)
                      +...|++++|+.++++..+..   +.|+    ..+++.|..+|...|++++|+.++++..+.    + ...|+ ..+++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            334455555555555554321   1111    234555555555555555555555544321    1 12222 344555


Q ss_pred             HHHHHhhcCCHHHHHHHHHh
Q 047571          657 MIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       657 l~~~~~~~g~~~~A~~~~~~  676 (681)
                      |..+|...|++++|..++++
T Consensus       377 La~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHH
Confidence            55555555555555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.26  E-value=0.059  Score=51.21  Aligned_cols=73  Identities=10%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHH
Q 047571          578 KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYL  655 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  655 (681)
                      .+..+|..+...+...|++++|+..++++...+  |+...|..+...+.-.|++++|.+.+++..+   +.|...+|.
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~  347 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY  347 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence            446677777777777799999999999999964  8888888888899999999999999987765   366666655

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.16  E-value=0.33  Score=37.81  Aligned_cols=141  Identities=4%  Similarity=-0.047  Sum_probs=91.2

Q ss_pred             HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          489 CIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                      +.-.|.+++..++..+...   ..+..-|+.++.-....-+-+-..+.++.+-+.   .|          ...+|++...
T Consensus        17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence            3445777777777777665   234445555555444444444444554444331   11          1234455444


Q ss_pred             HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 047571          569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE  648 (681)
Q Consensus       569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  648 (681)
                      ...+-.+.. +....+..+..+..+|.-|+-.+++..+... .+|++....-+..+|.+.|+..+|.+++.+..+. |++
T Consensus        81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k  157 (172)
T 1wy6_A           81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK  157 (172)
T ss_dssp             HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence            444433322 3345667788888999999999999996553 4889999999999999999999999999988775 554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.09  E-value=0.079  Score=39.23  Aligned_cols=65  Identities=11%  Similarity=-0.017  Sum_probs=51.0

Q ss_pred             ChhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          579 GSITWTAIIEAYGYNDL---CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       579 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      +...+..+..++...++   .++|..++++..+.. +-+......+...+.+.|++++|+++|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34556666666654443   799999999999853 447788888899999999999999999998875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.08  E-value=0.011  Score=58.71  Aligned_cols=62  Identities=10%  Similarity=-0.042  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNG-----G-FTPN-HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      +++.|..+|...|++++|+.++++..+-     | -.|+ ..+++.|...|...|++++|..++++..+
T Consensus       342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            4555666666666666666666554421     2 1232 35577777777777777777777776644

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.094  Score=43.74  Aligned_cols=129  Identities=12%  Similarity=0.045  Sum_probs=92.9

Q ss_pred             HHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHH
Q 047571          522 SVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALS  601 (681)
Q Consensus       522 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  601 (681)
                      ......|+++.|.++.+.+      .+...|..|.+.....|+++-|++.|.+...     +..+.-.|...|+.++-.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence            3445678999999987765      3578899999999999999999999998775     6666667777888887777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          602 LFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       602 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +-+.....|      -++.....+...|++++++++|.+..    .-|...      -.....|-.+.|.++++++
T Consensus        82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            766666554      14455566778899999999997443    223211      1122357788888888764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.96  E-value=0.034  Score=41.77  Aligned_cols=82  Identities=15%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcC
Q 047571           77 KDIQRFARQNKLKEALVILDYMDQQGIPVNVT-TFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSC  155 (681)
Q Consensus        77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  155 (681)
                      .....+.+.|++++|+..|+...+.. +.+.. .+..+..++...|++++|...|++..+.. +.+...+..        
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------   74 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence            35667888999999999999998764 34667 88888899999999999999999999886 333333311        


Q ss_pred             CChhHHHHhhhhc
Q 047571          156 GSFEDAEKVFDES  168 (681)
Q Consensus       156 g~~~~a~~~~~~~  168 (681)
                      +.+.++...+++.
T Consensus        75 ~~~~~a~~~~~~~   87 (99)
T 2kc7_A           75 KMVMDILNFYNKD   87 (99)
T ss_dssp             HHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHH
Confidence            4455566666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.89  E-value=0.017  Score=57.49  Aligned_cols=63  Identities=13%  Similarity=0.026  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNG-----G-FTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+++.+..+|...|++++|+.++++..+-     | ..| -..+++.|...|...|++++|..++++..+
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            46788888888888888888888876532     2 123 246788999999999999999999987754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.83  E-value=0.47  Score=45.14  Aligned_cols=73  Identities=10%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571          546 ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV  620 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  620 (681)
                      +.++.++..+...+...|++++|...++++..  |+...|..+...+...|++++|.+.|++...  +.|...+|..
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~  348 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW  348 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence            45677777777777778999999999988777  6666777788888899999999999999998  4787777643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.73  E-value=0.043  Score=44.52  Aligned_cols=66  Identities=8%  Similarity=-0.076  Sum_probs=45.2

Q ss_pred             CChhhHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          578 KGSITWTAIIEAYGYND---LCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ++..+...+.+++++.+   +.++++.++++..+.+ .|  +...+..|.-+|.+.|++++|.++++.+.+.
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45566666777777766   5567777777777753 24  3455666667777888888888888777653

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.62  E-value=2.5  Score=43.79  Aligned_cols=271  Identities=8%  Similarity=-0.042  Sum_probs=124.9

Q ss_pred             CCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHH
Q 047571          343 YSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPV  422 (681)
Q Consensus       343 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  422 (681)
                      .+.....-+.-+..+.+.+++......+.. ...+...-.....+....|+...|......+-..|- .....+..++..
T Consensus        68 ~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~  145 (618)
T 1qsa_A           68 LPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSV  145 (618)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHH
Confidence            333333444556666777778777776655 333555555666777778887777776666655542 223334444444


Q ss_pred             hhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 047571          423 CSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVF  502 (681)
Q Consensus       423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  502 (681)
                      +.+.|.+                ....++..+ ......|+...|..+...+..........++..+.   +...+....
T Consensus       146 ~~~~g~l----------------t~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~  205 (618)
T 1qsa_A          146 WRASGKQ----------------DPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFA  205 (618)
T ss_dssp             HHHTTCS----------------CHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHH
T ss_pred             HHHCCCC----------------CHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHH
Confidence            4433322                222222222 34445566666666666552111111122222221   222222222


Q ss_pred             HHhHhCCCCCCHHHHHHH---HHHhccccchHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCCHHHHHHHhhhC
Q 047571          503 RSMQLSKHRPDSVAMARM---LSVSGQLKALKLGKEIHGQVLKKDFASVPFVAA----ENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       503 ~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ..     +.++...-..+   +.-..+ .+.+.|...+....+.. ..+.....    .++..+...+...++...+...
T Consensus       206 ~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~  278 (618)
T 1qsa_A          206 RT-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA  278 (618)
T ss_dssp             HH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred             hc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence            11     12222211111   222222 25566666666655432 12222211    1222222223233333333321


Q ss_pred             CC--CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          576 PV--KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       576 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..  .+.....-.+....+.|+++.|...|+.|.... .....-.-.+..++...|+.++|..+|+.+.+
T Consensus       279 ~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          279 IMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            11  221112222233335678888888777775531 11233344566677777888888887777754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.89  Score=37.88  Aligned_cols=130  Identities=18%  Similarity=0.220  Sum_probs=92.7

Q ss_pred             HHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 047571          486 IDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFL  565 (681)
Q Consensus       486 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  565 (681)
                      .......|+++.|.++.+++      -+...|..+...+...|+++.|.+.|.....         +..+.-.|...|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            34456789999999998776      5688999999999999999999999987653         55677788888888


Q ss_pred             HHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571          566 ECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVM  641 (681)
Q Consensus       566 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  641 (681)
                      +....+-+.....+  -++.....+...|++++++++|.+.   |..|....      .....|..+.|.++.+.+
T Consensus        77 e~L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence            87776654332221  3455566677789999999998553   32232211      123357778888888766

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.40  E-value=0.61  Score=42.44  Aligned_cols=102  Identities=7%  Similarity=0.046  Sum_probs=66.0

Q ss_pred             HHHHHHHhhhCCC--CC---hhhHHHHHHHHHcC-----CChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcc-CCH
Q 047571          565 LECAKLVFDAVPV--KG---SITWTAIIEAYGYN-----DLCQEALSLFDKMRNGGFTP--NHFTFKVLLSICNQA-GFA  631 (681)
Q Consensus       565 ~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~-g~~  631 (681)
                      ...|...+++..+  |+   ...|..+...|...     |+.++|.+.|++.++  +.|  +..++....+.++.. |+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence            4556666666655  43   44677777777773     788888888888887  345  366677777777764 888


Q ss_pred             HHHHHHHHHhhhcCCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          632 DEACRIFNVMSRGYKIE--ALEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       632 ~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ++|.+++++..+. ...  |+....        ..++-++|..+++++
T Consensus       257 ~~a~~~L~kAL~a-~p~~~P~~~la--------n~~~q~eA~~LL~~~  295 (301)
T 3u64_A          257 AGFDEALDRALAI-DPESVPHNKLL--------VILSQKRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHHC-CGGGCSSCHHH--------HHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcC-CCCCCCChhHH--------HHHHHHHHHHHHHHh
Confidence            8888888877764 444  443322        234456666666553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.22  E-value=0.079  Score=40.29  Aligned_cols=66  Identities=8%  Similarity=-0.123  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGG------FTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                      -.-.+...+...|+++.|...|++..+.-      -.+....+..|..++.+.|+++.|+.++++   ...+.|+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~---al~l~P~   78 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK---LLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHCTT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHH---HHhcCCC
Confidence            34467778888899999998888876531      123567788888888899999998888873   3567776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.76  E-value=0.14  Score=37.92  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=40.8

Q ss_pred             CCCchhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571           69 EKNPRAIYKDIQRFARQNK---LKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRING  137 (681)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  137 (681)
                      |.++..+..+..++...++   .++|..+|++..+.+ +-++.....+...+.+.|++++|...|+.+.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4455555566555544433   466666666666654 3355666666666666666666666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.44  E-value=0.13  Score=46.80  Aligned_cols=107  Identities=10%  Similarity=-0.056  Sum_probs=79.9

Q ss_pred             cchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhc-----CCHHHHHHHhhhCCC--CC--hhhHHHHHHHHHc-CCCh
Q 047571          528 KALKLGKEIHGQVLKKDFAS-VPFVAAENIKMYGMC-----GFLECAKLVFDAVPV--KG--SITWTAIIEAYGY-NDLC  596 (681)
Q Consensus       528 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~-~~~~  596 (681)
                      +....|...+++.++.+..- +...|..+...|.+.     |+.++|.+.|++...  |+  ..++......++. .|+.
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            35667778888887754321 367899999999994     999999999999887  63  7788888888888 4999


Q ss_pred             HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047571          597 QEALSLFDKMRNGGFT--PNHFTFKVLLSICNQAGFADEACRIFNVMS  642 (681)
Q Consensus       597 ~~a~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  642 (681)
                      +++.+.+++.......  |+....        ..+.-++|..+++++.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~~~  296 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHHhH
Confidence            9999999999996555  553333        3334466766666543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.12  E-value=0.21  Score=38.87  Aligned_cols=66  Identities=8%  Similarity=-0.061  Sum_probs=37.7

Q ss_pred             CChhhHHHHHHHHHcCCChHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          578 KGSITWTAIIEAYGYNDLCQE---ALSLFDKMRNGGFTP--NHFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ++..+--.+.+++++.++...   ++.+++++...+ .|  .......|.-++.+.|++++|.++++.+.+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344444555666666554433   666666666643 23  3344445555666777777777777666553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.88  E-value=0.16  Score=41.49  Aligned_cols=29  Identities=14%  Similarity=-0.001  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          651 EEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       651 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      .+.-.-+..||.+.|+.++|+.+++.+|.
T Consensus       122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          122 IEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence            35556688999999999999999999885

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.25  E-value=0.35  Score=39.20  Aligned_cols=79  Identities=14%  Similarity=0.036  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCC--chhHHHHHHHHhhcCCChhHHHH
Q 047571           89 KEALVILDYMDQQGIPVNVTTFNALITACVRTR---SLVEGRLIHTHIRINGLEN--NGFLRTKLVKMYTSCGSFEDAEK  163 (681)
Q Consensus        89 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~  163 (681)
                      ..+.+.|.+....| +++..+...+..++++++   +.+++..+++...+.+ .|  +...+-.|.-++.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            44566666666665 378888888888999988   6669999999998876 33  34455566667788999999999


Q ss_pred             hhhhcC
Q 047571          164 VFDESS  169 (681)
Q Consensus       164 ~~~~~~  169 (681)
                      .++.+.
T Consensus        93 y~~~lL   98 (152)
T 1pc2_A           93 YVRGLL   98 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998755

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.22  E-value=0.59  Score=35.29  Aligned_cols=67  Identities=9%  Similarity=-0.016  Sum_probs=49.9

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQG------IPVNVTTFNALITACVRTRSLVEGRLIHTHIRING  137 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  137 (681)
                      ++..+..+...+.+.|++..|...|+...+.-      -.+....+..+..++.+.|+++.|...++.+.+..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            34456677888888888888888888875531      12355677888888888888888888888887765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.05  E-value=2.6  Score=33.00  Aligned_cols=65  Identities=9%  Similarity=0.042  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          480 ISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       480 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                      ......+..+..+|+-++-.+++.++.. +.+|+......+..+|.+.|+..++.+++.+.-+.|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            3445556777778888888888877543 2467777777777888888888888887777776664

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.87  E-value=7.9  Score=35.87  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHH----HHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALG----VFRSMQLSKHRPDSVAMARMLSVSGQ  526 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~  526 (681)
                      |.++..=|.+.+++++|.+++..-           ...+.+.|+...|.+    +.+-..+.+++++......++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            344555677778888888876432           334556677665554    45666677889998888888877766


Q ss_pred             ccchH-HHHHHHHHHHHc----C--CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcC---CCh
Q 047571          527 LKALK-LGKEIHGQVLKK----D--FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYN---DLC  596 (681)
Q Consensus       527 ~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  596 (681)
                      ....+ .-..+.+.++++    |  ...++.....+...|.+.|++.+|+.-|-.....+...+..++..+...   |..
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~  184 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED  184 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence            43222 234555555542    2  2347889999999999999999999877532222344444444333322   222


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          597 QEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       597 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .++              +.. ....+--|.-.|+...|..+++...+
T Consensus       185 ~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          185 STV--------------AEF-FSRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             chH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            211              111 12223345567889999998887654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.53  E-value=1.3  Score=35.47  Aligned_cols=96  Identities=6%  Similarity=-0.102  Sum_probs=55.0

Q ss_pred             CChhHHHHHHHHHHhcCCH------HHHHHHhhhCCC---CC-hhhHHHHHHH------HHcCCChHHHHHHHHHHHhCC
Q 047571          547 SVPFVAAENIKMYGMCGFL------ECAKLVFDAVPV---KG-SITWTAIIEA------YGYNDLCQEALSLFDKMRNGG  610 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~---~~-~~~~~~l~~~------~~~~~~~~~a~~~~~~m~~~g  610 (681)
                      -++++|-..+....+.|+.      ++..++|+++..   |+ ...|...|..      +...+|.++|.++|+.+++.+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            3566777777777777777      666666665444   22 1111111111      112367777777777776542


Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          611 FTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       611 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                       +-=...|.....-=.+.|+.+.|.+++.....
T Consensus        91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG  122 (161)
T 4h7y_A           91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE  122 (161)
T ss_dssp             -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence             22255555555555667777777777776654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.88  E-value=9.5  Score=37.82  Aligned_cols=182  Identities=11%  Similarity=0.034  Sum_probs=101.6

Q ss_pred             CChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhc----ccc
Q 047571          462 GVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG----QLK  528 (681)
Q Consensus       462 g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~  528 (681)
                      |+++.|.+.+-.+.+     .|    ......++..|...|+++...+.+.-+....-.. ......++..+.    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            667777776644432     22    2346667788888899888877776665433222 222334443332    122


Q ss_pred             chHHH--HHHHHHHH---HcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHH
Q 047571          529 ALKLG--KEIHGQVL---KKDFAS---VPFVAAENIKMYGMCGFLECAKLVFDAVPV-----KG----SITWTAIIEAYG  591 (681)
Q Consensus       529 ~~~~a--~~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~  591 (681)
                      ..+..  ..+.+.+.   +..+-.   .......|...|...|++.+|..++..+..     .+    ...|..-++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            22211  11111111   001111   123445677778888888888877776543     11    345666677777


Q ss_pred             cCCChHHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhhc
Q 047571          592 YNDLCQEALSLFDKMR----NGGFTPN--HFTFKVLLSICNQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       592 ~~~~~~~a~~~~~~m~----~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  644 (681)
                      ..+++.+|..+++++.    ....+|+  ...+...+..+...+++.+|.+.|.++.+.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            7888888887777753    2222222  234556666677778888877777766654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.22  E-value=2.7  Score=30.82  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      |.=+..+-++.+....+-|++......+.+|.+.+++.-|.++++.++.+-+..  ..+|..+++-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence            555677778888888889999999999999999999999999999988753333  4567666543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.17  E-value=12  Score=34.77  Aligned_cols=165  Identities=7%  Similarity=0.055  Sum_probs=97.4

Q ss_pred             hHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHcCcCCCHHHHHHHHHHhhcc
Q 047571          351 SSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRS----IAWMQQEGFRPDVVTVATVIPVCSQL  426 (681)
Q Consensus       351 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~  426 (681)
                      .++..=|.+.+++++|.+++..           -...+.+.|+...|-++    ++...+.+++++......++..+...
T Consensus        37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~  105 (312)
T 2wpv_A           37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL  105 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            4555667778888888887543           23446667776665554    55556678888888888777776553


Q ss_pred             CChh-HHHHHHHHHHH----hCC--CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhc---CChh
Q 047571          427 KALN-HGKEIHAYAVK----NQF--LPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIEN---GRLD  496 (681)
Q Consensus       427 ~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~~~~  496 (681)
                      ...+ .-.++++.+++    .|-  .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+...   |...
T Consensus       106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~  185 (312)
T 2wpv_A          106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS  185 (312)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence            3211 22344444443    332  246677888888999999999999988633323455555555544443   4333


Q ss_pred             HHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571          497 DALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       497 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                      ++--..              -..++ -|.-.++...|..+++...
T Consensus       186 e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          186 TVAEFF--------------SRLVF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred             hHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHH
Confidence            321111              11122 2334567777777776554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.69  E-value=1.6  Score=42.46  Aligned_cols=79  Identities=11%  Similarity=0.017  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYLIM  657 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l  657 (681)
                      +...++..+...|++++|+..++.+.... +-+...+..++.++.+.|+..+|++.|+.+.+    .+|+.|...+-...
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34556777788999999999998888752 44888899999999999999999999887644    46899986654444


Q ss_pred             HHHH
Q 047571          658 IDIL  661 (681)
Q Consensus       658 ~~~~  661 (681)
                      -.++
T Consensus       252 ~~il  255 (388)
T 2ff4_A          252 ERIL  255 (388)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.61  E-value=1.6  Score=46.16  Aligned_cols=53  Identities=11%  Similarity=-0.042  Sum_probs=45.1

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047571          587 IEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVM  641 (681)
Q Consensus       587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  641 (681)
                      ..-|...|+++-|+++.++.+.  +.| +-.+|..|..+|...|+++.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445678999999999999988  456 6789999999999999999999988877

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.28  E-value=3.9  Score=32.81  Aligned_cols=99  Identities=10%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             CCCCCchhHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCCCChhh----HHHHHH---HHHhcCChhHHHHHHHHH
Q 047571           67 LHEKNPRAIYKDIQRFARQNKL------KEALVILDYMDQQGIPVNVTT----FNALIT---ACVRTRSLVEGRLIHTHI  133 (681)
Q Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~----~~~ll~---~~~~~~~~~~a~~~~~~~  133 (681)
                      ..|.|+++|...+..+-+.|++      +...++|++.... +||+...    |--+.-   .+...++.++|.++|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4577899999999999999999      8888899988764 5664321    111111   112347888888888888


Q ss_pred             HHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhh
Q 047571          134 RINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDE  167 (681)
Q Consensus       134 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  167 (681)
                      .+.+-.- ...|....+.-.+.|+++.|.+++..
T Consensus        87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~  119 (161)
T 4h7y_A           87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK  119 (161)
T ss_dssp             HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            7663222 55566656666667777777777764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.09  E-value=19  Score=35.67  Aligned_cols=255  Identities=9%  Similarity=-0.012  Sum_probs=120.3

Q ss_pred             ChhhHHHHHHHHHHc-----CCCCChhhHHHHHHHhhccCchhhhHHHHHHHHHh-CCCCCcHHHhHHHHHH----HhcC
Q 047571          190 RYRGVLFNYMKMREL-----GVQLNVYTFSCVIKSFAGASALMQGLKTHALLIKN-GFVDYLILRTSLIDMY----FKCG  259 (681)
Q Consensus       190 ~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~----~~~~  259 (681)
                      ++..|++.+..+.+.     ...-.......++..|...|+++...+.+..+.+. |..+.  ....+++.+    ....
T Consensus        31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCC
Confidence            455555554443321     12223444666777777778887777766665543 32221  122333222    2223


Q ss_pred             ChH--HHHHHHhccCC---C-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhh
Q 047571          260 KIK--LARRVFDETGD---R-------DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWAR  327 (681)
Q Consensus       260 ~~~--~a~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  327 (681)
                      ..+  .-..+.+....   .       .......|...+...|++.+|.+++..+...-...+....             
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~-------------  175 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE-------------  175 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence            222  22333333322   1       1123456778888999999999999988653111221111             


Q ss_pred             cccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCC------CC----hhhHHHHHHHHHhCCChHHH
Q 047571          328 KLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEE------RN----EILWTALMSGYVSNGRLEQA  397 (681)
Q Consensus       328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~A  397 (681)
                                        -...+...++.|...+++..|..++..+..      ++    ...|...+..+...+++.+|
T Consensus       176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a  237 (445)
T 4b4t_P          176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV  237 (445)
T ss_dssp             ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence                              011222344445555555555554444321      01    12344555555666667666


Q ss_pred             HHHHHHHHHc-CcCCCHHHHHH----HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CChHHHHHH
Q 047571          398 LRSIAWMQQE-GFRPDVVTVAT----VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC--GVLDYSLKL  470 (681)
Q Consensus       398 ~~~~~~m~~~-g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~  470 (681)
                      ...|.+..+. ...-|...+..    ++.+..-.+....-..++........-++...|..++.+|...  .+++...+.
T Consensus       238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~  317 (445)
T 4b4t_P          238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT  317 (445)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence            6666655432 11112211111    1111111111112222222222322235566778888888653  456777777


Q ss_pred             HhhCCCC
Q 047571          471 FDEMEVR  477 (681)
Q Consensus       471 ~~~~~~~  477 (681)
                      |.....+
T Consensus       318 ~~~~L~~  324 (445)
T 4b4t_P          318 YEPVLNE  324 (445)
T ss_dssp             TCSSTTT
T ss_pred             HHHHhcc
Confidence            7665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.75  E-value=2  Score=33.39  Aligned_cols=63  Identities=8%  Similarity=-0.026  Sum_probs=28.0

Q ss_pred             CCHHHHHHHHHHHhccCCHHH---HHHHHHHhhhcCCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          613 PNHFTFKVLLSICNQAGFADE---ACRIFNVMSRGYKIEA--LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      |+..+-..+.+++.+.....+   ++.+++.+.+. + .|  .......|.-++.+.|++++|+++++.+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l  100 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL  100 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            444444444555555444333   44444444432 1 12  1233334444455555555555554443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.72  E-value=5.2  Score=29.34  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571           87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK  150 (681)
Q Consensus        87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  150 (681)
                      +.-+..+-++.+...+.-|++......+++|.+.+++..|.++++-.+..- .+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            555677778888888888999999999999999999999999999887654 333556766664

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.79  E-value=2.9  Score=40.73  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=47.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCchhHHH
Q 047571           76 YKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRI-----NGLENNGFLRT  146 (681)
Q Consensus        76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  146 (681)
                      ..++..+...|++.+++..+..+.... +.+...+..++.++.+.|+..+|.+.|+...+     .|+.|++.+-.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            344556666777777777777776553 45666777777777777777777777777643     37777766543

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=87.76  E-value=29  Score=36.18  Aligned_cols=84  Identities=11%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 047571          383 ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSK--  460 (681)
Q Consensus       383 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  460 (681)
                      .....+.-.|+++.|++.+-..    ...+.+.+.+.+..+.-.+-   ...++..  +.+ .| ..-+..||..|.+  
T Consensus       299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F  367 (661)
T 2qx5_A          299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSF  367 (661)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHh
Confidence            3556677889999999887754    35677777776665544332   1111111  001 11 2235667777765  


Q ss_pred             -cCChHHHHHHHhhCCCC
Q 047571          461 -CGVLDYSLKLFDEMEVR  477 (681)
Q Consensus       461 -~g~~~~a~~~~~~~~~~  477 (681)
                       ..++.+|.++|--+...
T Consensus       368 ~~td~~~Al~Y~~li~l~  385 (661)
T 2qx5_A          368 RYSDPRVAVEYLVLITLN  385 (661)
T ss_dssp             TTTCHHHHHHHHHGGGGS
T ss_pred             hcCCHHHHHHHHHHHhcc
Confidence             57888888877666433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.44  E-value=7.2  Score=44.33  Aligned_cols=21  Identities=14%  Similarity=0.211  Sum_probs=11.6

Q ss_pred             HHHHHHhcCChHHHHHHHhhC
Q 047571          454 LMIMYSKCGVLDYSLKLFDEM  474 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~  474 (681)
                      +..+|...|++++|.++|++.
T Consensus       848 ~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          848 KALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHH
Confidence            344455556666666666554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.39  E-value=19  Score=33.66  Aligned_cols=134  Identities=10%  Similarity=0.031  Sum_probs=84.1

Q ss_pred             HhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHcCcCCCHHHHHHHHHHhhc
Q 047571          350 RSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRS----IAWMQQEGFRPDVVTVATVIPVCSQ  425 (681)
Q Consensus       350 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~  425 (681)
                      |.++..=|.+.+++++|.+++..           -...+.+.|+...|-++    ++...+.++++|.....-++..+..
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            35566668888888888887533           23446667776655544    4556667888998888877777666


Q ss_pred             cCChh-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 047571          426 LKALN-HGKEIHAYAV----KNQ--FLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGR  494 (681)
Q Consensus       426 ~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~  494 (681)
                      ...-+ .=..+.+.++    +.|  ..-+...-..+...|.+.+++.+|+..|---.++....|..++.-+...+.
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~  182 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE  182 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            54321 1133333333    333  234566777788899999999999998853333333566555555554443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=86.90  E-value=4.9  Score=31.27  Aligned_cols=64  Identities=17%  Similarity=0.164  Sum_probs=50.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHH
Q 047571          595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDI  660 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  660 (681)
                      |.-+..+-++.+....+-|++......+.+|.+.+|+..|.++|+.++.+  ..+...+|..+++-
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE  131 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE  131 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence            44456677777878888999999999999999999999999999999875  33445567766543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.92  E-value=25  Score=32.81  Aligned_cols=129  Identities=12%  Similarity=0.108  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHH----HHHHhHhCCCCCCHHHHHHHHHHhcc
Q 047571          451 ITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALG----VFRSMQLSKHRPDSVAMARMLSVSGQ  526 (681)
Q Consensus       451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~  526 (681)
                      |.++..=|.+.+++++|.+++..-           ...+.+.|+...|.+    +++-..+.++++|..+...++..+..
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            344555577778888888776332           234555666555444    34556667888888888888877766


Q ss_pred             ccchH-HHHHHHHHHHHc----C--CCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHH
Q 047571          527 LKALK-LGKEIHGQVLKK----D--FASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAY  590 (681)
Q Consensus       527 ~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~  590 (681)
                      ....+ .-..+.+.++++    |  ..-++.....+...|.+.+++.+|+.-|--...+....+..++..+
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew  177 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEW  177 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            55322 223444554432    2  3456888899999999999999998887432222234454444333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=84.68  E-value=7.3  Score=30.45  Aligned_cols=70  Identities=9%  Similarity=-0.075  Sum_probs=47.8

Q ss_pred             CChhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          578 KGSITWTAIIEAYGYNDL---CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                      ++..+--.+.+++.+..+   ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+   ..|+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~  110 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN  110 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCC
Confidence            445555556667776554   456888888888754112356666777788888999999888887765   3555

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=84.22  E-value=52  Score=35.84  Aligned_cols=301  Identities=9%  Similarity=-0.031  Sum_probs=148.8

Q ss_pred             HHHhcCCHHHHHHHHhhcCCC----Chh--hHHHHHHHHHhCCChHHHHHHHHHHHHcCc-------CCCHHHHHHHHHH
Q 047571          356 MYCKCRDMNSAWRVFYETEER----NEI--LWTALMSGYVSNGRLEQALRSIAWMQQEGF-------RPDVVTVATVIPV  422 (681)
Q Consensus       356 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~  422 (681)
                      +....|+.++++.+++.....    +..  .=..+.-+.+..|..+++..++.......-       .+....-..+--+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            455667777777777776541    211  222233345555655567776666554311       0111111222222


Q ss_pred             hhccCC-hhHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChHHHHHHHhhCCC-CCcch--HHHHHHHHHhcCChh
Q 047571          423 CSQLKA-LNHGKEIHAYAVKNQFLPNVSIIT--SLMIMYSKCGVLDYSLKLFDEMEV-RNVIS--WTAMIDSCIENGRLD  496 (681)
Q Consensus       423 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--~~~li~~~~~~~~~~  496 (681)
                      +.-.|. -+++.+.+..+.... .+......  +|...+...|+.+....++..+.+ .+...  .-.+.-++...|+.+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred             HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence            222332 234455555544422 11111122  233334566777666666665432 22222  233334455778888


Q ss_pred             HHHHHHHHhHhCCCCCCHHHHH---HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhcCCHHHHHHH
Q 047571          497 DALGVFRSMQLSKHRPDSVAMA---RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM--YGMCGFLECAKLV  571 (681)
Q Consensus       497 ~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~  571 (681)
                      .+..+.+.+.... .| ..-|.   .+.-+|+..|+......++..+....   +..+-...+.+  ....|+.+.+.++
T Consensus       542 ~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          542 LADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             GGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             HHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            8888888887631 22 22233   33446777788877777888877642   22333333333  3345666667777


Q ss_pred             hhhCCC-CChhhHH--HHHHHHHcCCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---------CHHHHHHHH
Q 047571          572 FDAVPV-KGSITWT--AIIEAYGYNDL-CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAG---------FADEACRIF  638 (681)
Q Consensus       572 ~~~~~~-~~~~~~~--~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~  638 (681)
                      ++.+.. .|...-.  .+.-+....|+ ..++++++..+..   .+|..+-...+.++...|         +....++.+
T Consensus       617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L  693 (963)
T 4ady_A          617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNF  693 (963)
T ss_dssp             TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence            765554 3433222  23333334444 3678889999875   556655544554444433         233333333


Q ss_pred             HHhhhcCCCCCChhHHHHHHHHHhhcC
Q 047571          639 NVMSRGYKIEALEEHYLIMIDILTRFG  665 (681)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~l~~~~~~~g  665 (681)
                      ......-...++...-..+..++...|
T Consensus       694 ~~~~~dk~~d~~~~fga~iAqGll~aG  720 (963)
T 4ady_A          694 LSVITNKHQEGLAKFGACVAQGIMNAG  720 (963)
T ss_dssp             HHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHhcC
Confidence            322221022344455555555555444

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.07  E-value=10  Score=27.69  Aligned_cols=78  Identities=14%  Similarity=0.084  Sum_probs=54.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHH
Q 047571          122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKM  201 (681)
Q Consensus       122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m  201 (681)
                      ..++|.-+-+++...+.  ...+--+-+..+.+.|++++|..+.+.+.-||..+|-++-.+  +.|  -.+.+..-+..+
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG--l~s~le~rL~~l   94 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLG--LGAALDRRLAGL   94 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc--cHHHHHHHHHHH
Confidence            56788888888877763  444444556677889999999999999998999888877543  444  444555555455


Q ss_pred             HHcC
Q 047571          202 RELG  205 (681)
Q Consensus       202 ~~~g  205 (681)
                      ...|
T Consensus        95 a~sg   98 (115)
T 2uwj_G           95 GGSS   98 (115)
T ss_dssp             HTCS
T ss_pred             HhCC
Confidence            5554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.93  E-value=4.6  Score=42.78  Aligned_cols=55  Identities=11%  Similarity=-0.095  Sum_probs=47.9

Q ss_pred             HHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhccC
Q 047571          622 LSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMSSS  679 (681)
Q Consensus       622 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  679 (681)
                      ..-|...|+++-|+++-++....   .|+ ..+|..|..+|.+.|+++.|+-.++.+|-
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence            44567789999999999988763   554 89999999999999999999999999984

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.97  E-value=16  Score=29.00  Aligned_cols=80  Identities=9%  Similarity=-0.063  Sum_probs=52.9

Q ss_pred             HHHHHHHhhhC-C-CCChhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047571          565 LECAKLVFDAV-P-VKGSITWTAIIEAYGYNDL---CQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFN  639 (681)
Q Consensus       565 ~~~a~~~~~~~-~-~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  639 (681)
                      +...++-+..- . .++..+--.+.+++.+..+   ..+++.+++++...+..-.......|.-++.+.|++++|.++.+
T Consensus        22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d  101 (144)
T 1y8m_A           22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD  101 (144)
T ss_dssp             HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44444445433 2 2455555566777777654   55788888888875422244556667778899999999999998


Q ss_pred             Hhhhc
Q 047571          640 VMSRG  644 (681)
Q Consensus       640 ~~~~~  644 (681)
                      .+.+.
T Consensus       102 ~lL~~  106 (144)
T 1y8m_A          102 TLFEH  106 (144)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.80  E-value=12  Score=29.09  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=49.9

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571           87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK  150 (681)
Q Consensus        87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  150 (681)
                      |.-+..+-++.+...++-|++......+++|.+.+|+..|.++|+-.+..- .+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            455677777777788888999999999999999999999999999887654 344556776664

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.71  E-value=10  Score=27.63  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHH
Q 047571          122 SLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKM  201 (681)
Q Consensus       122 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m  201 (681)
                      ..++|.-+-+++...+.  ...+--+-+..+.+.|++++|..+.+.+.-||..+|-++-.+  +.|  -.+.+..-+..+
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG--l~s~le~rL~~l   95 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLG--LGSALESRLNRL   95 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc--cHHHHHHHHHHH
Confidence            56778888888877663  444444556677788999999999998888888888877554  333  334444444444


Q ss_pred             HHcC
Q 047571          202 RELG  205 (681)
Q Consensus       202 ~~~g  205 (681)
                      ...|
T Consensus        96 a~sg   99 (116)
T 2p58_C           96 ARSQ   99 (116)
T ss_dssp             TTCC
T ss_pred             HhCC
Confidence            4444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.39  E-value=17  Score=35.10  Aligned_cols=125  Identities=9%  Similarity=-0.036  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC-----C---ChhhHHHHHHHHHcC-CChHHHHHHHHHHHh----CC-CCCCHHH
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV-----K---GSITWTAIIEAYGYN-DLCQEALSLFDKMRN----GG-FTPNHFT  617 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~----~g-~~p~~~~  617 (681)
                      ...|...|.+.|+.++...++.....     +   .......++..+... +..+.-.++..+..+    .. .-.....
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l  101 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL  101 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777777888777777776655     1   123455667666653 333444444444332    11 0001112


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 047571          618 FKVLLSICNQAGFADEACRIFNVMSRGYKIEAL----EEHYLIMIDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       618 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  676 (681)
                      =.-|+..|...|++.+|.+++..+.+...-..+    .+.+..-++.|...|++.++...+.+
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~  164 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS  164 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            225777888888888888888877664222111    45566677778888888888877654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.26  E-value=40  Score=32.47  Aligned_cols=228  Identities=8%  Similarity=-0.019  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhc-CChHHHHHHHhhCCC---CCcchH--
Q 047571          413 VVTVATVIPVCSQLKALNHGKEIHAYAVKN-QFLP---NVSIITSLMIMYSKC-GVLDYSLKLFDEMEV---RNVISW--  482 (681)
Q Consensus       413 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~---~~~~~~--  482 (681)
                      ......+...+.+.|+.++..+++...... +.-|   .......+++.+... +..+.-.++..+..+   .+-.+|  
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788889999999888888765431 1122   234466777777764 334444444444432   122233  


Q ss_pred             ----HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCH-----HHHHHHHHHhccccchHHHHHHHHHHHHc--CCCCChhH
Q 047571          483 ----TAMIDSCIENGRLDDALGVFRSMQLSKHRPDS-----VAMARMLSVSGQLKALKLGKEIHGQVLKK--DFASVPFV  551 (681)
Q Consensus       483 ----~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~  551 (681)
                          .-++..|...|++.+|.+++.++.+.=-..|.     ..+..-+..|...++..++...+......  .+.+++.+
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                24678899999999999999888763212221     13445566777888999999988877653  23344444


Q ss_pred             HHHH----HHHHH-hcCCHHHHHHHhhhCCC----CC------hhhHHHHHHHHHcCCChHHHHHHH-HHHHhCCCCCCH
Q 047571          552 AAEN----IKMYG-MCGFLECAKLVFDAVPV----KG------SITWTAIIEAYGYNDLCQEALSLF-DKMRNGGFTPNH  615 (681)
Q Consensus       552 ~~~l----~~~~~-~~g~~~~a~~~~~~~~~----~~------~~~~~~l~~~~~~~~~~~~a~~~~-~~m~~~g~~p~~  615 (681)
                      ...+    ...+. ..+++.+|...|-+...    .+      ...|..+. +... ++..+.-.++ .+....-..|..
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~~~pei  256 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITYSGRDI  256 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTTCSHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHc-CCHHHHHHHhccccccccCCccH
Confidence            3322    33455 67888888777654321    11      11232222 2222 2222222222 121111123444


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ..+..++.+ ...+++.+..++++....
T Consensus       257 ~~l~~L~~a-~~~~dl~~f~~iL~~~~~  283 (394)
T 3txn_A          257 DAMKSVAEA-SHKRSLADFQAALKEYKK  283 (394)
T ss_dssp             HHHHHHHHH-HHTTCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHH-HHhCCHHHHHHHHHHHHH
Confidence            445555554 455677777777776544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=80.93  E-value=14  Score=26.96  Aligned_cols=86  Identities=10%  Similarity=0.014  Sum_probs=58.9

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571          428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQL  507 (681)
Q Consensus       428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~  507 (681)
                      ..++|..|-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|-+|-.  .+.|-.+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666665542  22222233455678899999999999998899988877644  577888888888878877


Q ss_pred             CCCCCCHHHHH
Q 047571          508 SKHRPDSVAMA  518 (681)
Q Consensus       508 ~g~~p~~~~~~  518 (681)
                      +| .|....|.
T Consensus        97 sg-~p~~q~Fa  106 (115)
T 2uwj_G           97 SS-DPALADFA  106 (115)
T ss_dssp             CS-SHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            76 55555443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=80.81  E-value=9.8  Score=29.75  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          652 EHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       652 ~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      +.+.-|.-++.+.|++++|+++++.+
T Consensus        79 d~LYyLAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           79 ECLYYLTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33344444444445555444444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=80.78  E-value=15  Score=29.21  Aligned_cols=66  Identities=3%  Similarity=-0.213  Sum_probs=40.1

Q ss_pred             CCChhHHHHHHHHHHhcCCHH---HHHHHhhhCCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571          546 ASVPFVAAENIKMYGMCGFLE---CAKLVFDAVPV--KG--SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP  613 (681)
Q Consensus       546 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  613 (681)
                      .+++.+-..+..++.+..+.+   ++..+++.+..  |.  -...--|.-++.+.|++++|.+..+.+.+  +.|
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP  108 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER  108 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCC
Confidence            466666666666776665533   45555555443  21  22233455567777888888887777777  456

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=80.51  E-value=27  Score=29.99  Aligned_cols=109  Identities=10%  Similarity=0.009  Sum_probs=54.1

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      +++.+-...+.++++.|+.+....+.+.+..++...-...+.++...|+. +++..+.++.+   .++...-...+.++.
T Consensus        93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~  168 (211)
T 3ltm_A           93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG  168 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence            34444455555555555544444444444445544444455555555543 34444545443   456666666667777


Q ss_pred             ccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhc
Q 047571          627 QAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRF  664 (681)
Q Consensus       627 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  664 (681)
                      +.|. .++...+..+.+.    ++...-...+.++.+.
T Consensus       169 ~~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          169 EIGG-ERVRAAMEKLAET----GTGFARKVAVNYLETH  201 (211)
T ss_dssp             HHCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHC-
T ss_pred             HhCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHhc
Confidence            7666 4455555555442    2333444444444433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=80.28  E-value=15  Score=26.87  Aligned_cols=86  Identities=9%  Similarity=0.067  Sum_probs=57.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571          428 ALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQL  507 (681)
Q Consensus       428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~  507 (681)
                      ..++|..|-+.+...+.  ...+--+-+..+.+.|++++|..+.+...-||...|-+|-.  .+.|-.+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666655442  22222233445678899999999999998899988877644  467777877777777777


Q ss_pred             CCCCCCHHHHH
Q 047571          508 SKHRPDSVAMA  518 (681)
Q Consensus       508 ~g~~p~~~~~~  518 (681)
                      +| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            66 55555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	681
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.01
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.9
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.64
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.61
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.6
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.25
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.19
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.17
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.14
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.12
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.07
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.04
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.01
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.0
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.94
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.9
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.74
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.65
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.45
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.45
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.2
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.11
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.01
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.56
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.53
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.24
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.53
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.13
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.33
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.26
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.04
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.16
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	90.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.54
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	87.98

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.3e-18  Score=169.84  Aligned_cols=371  Identities=13%  Similarity=0.065  Sum_probs=250.7

Q ss_pred             HHHHHHhcCChHHHHHHHhccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhh
Q 047571          251 LIDMYFKCGKIKLARRVFDETGD--R-DIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVVLTILLPVIGEAWAR  327 (681)
Q Consensus       251 li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  327 (681)
                      +...+.+.|++++|.+.++++.+  | +...+..+...+.+.|++++|+..|++..+..  |+                 
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-----------------   65 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL-----------------   65 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-----------------
Confidence            44556677777777777766543  2 45666777777777777777777777766542  22                 


Q ss_pred             cccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 047571          328 KLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEER---NEILWTALMSGYVSNGRLEQALRSIAWM  404 (681)
Q Consensus       328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m  404 (681)
                                        +..++..+..+|.+.|++++|...+......   +...+..........+....+.......
T Consensus        66 ------------------~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (388)
T d1w3ba_          66 ------------------LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA  127 (388)
T ss_dssp             ------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             ------------------CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                              2334445555666666666666666554432   2233333344444444555555444444


Q ss_pred             HHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ccch
Q 047571          405 QQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVIS  481 (681)
Q Consensus       405 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~  481 (681)
                      ..... ................+....+...+....... +.+...+..+...+...|++++|...+++..+  | +...
T Consensus       128 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  205 (388)
T d1w3ba_         128 LQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA  205 (388)
T ss_dssp             HHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccc-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHH
Confidence            44322 233333334444555566666666666655543 33455666677777777888888777776543  3 3456


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      |..+...+...|++++|+..+++....+ ..+...+..+...+...|++++|...+++.++.. +-++..+..+..++..
T Consensus       206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  283 (388)
T d1w3ba_         206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            7777777888888888888888777654 4455666677777778888888888888877653 2346777888888888


Q ss_pred             cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047571          562 CGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIF  638 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~  638 (681)
                      .|++++|...++....   .+...+..+...+...|++++|++.|++..+.. +-+..++..+..++.+.|++++|++.|
T Consensus       284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~  362 (388)
T d1w3ba_         284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888876655   346678888888999999999999999988742 336788889999999999999999999


Q ss_pred             HHhhhcCCCCCC-hhHHHHHHHHHhhcCC
Q 047571          639 NVMSRGYKIEAL-EEHYLIMIDILTRFGR  666 (681)
Q Consensus       639 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  666 (681)
                      ++..+   +.|+ ...|..|+.+|.+.||
T Consensus       363 ~~al~---l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         363 KEAIR---ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHT---TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHH---hCCCCHHHHHHHHHHHHHcCC
Confidence            97765   4564 7788999999988876

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.9e-18  Score=167.04  Aligned_cols=372  Identities=11%  Similarity=-0.009  Sum_probs=249.5

Q ss_pred             HHhhccCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCC---CChhhHHHHHHHHHhcCChHH
Q 047571          218 KSFAGASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGD---RDIVVWGSMIAGFAHNRLRWE  294 (681)
Q Consensus       218 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  294 (681)
                      ..+.+.|++++|.+.++.+.+.. +-+..++..+...|.+.|++++|...|++..+   .+..+|..+...+.+.|++++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            34556677777777777776653 33456677777777788888888888876543   355677888888888888888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcC
Q 047571          295 ALDCARWMIREGIYPNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETE  374 (681)
Q Consensus       295 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  374 (681)
                      |+..+....+..... ..............+...............                                 .
T Consensus        86 A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~  131 (388)
T d1w3ba_          86 AIEHYRHALRLKPDF-IDGYINLAAALVAAGDMEGAVQAYVSALQY---------------------------------N  131 (388)
T ss_dssp             HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---------------------------------C
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccc---------------------------------c
Confidence            888888877653222 122222222222211111111111111111                                 1


Q ss_pred             CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHH
Q 047571          375 ERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSL  454 (681)
Q Consensus       375 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  454 (681)
                      .................+....+...+....... +-+...+..+...+...|+.+.|...++...+.. +.+...+..+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  209 (388)
T d1w3ba_         132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL  209 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            1123333444444555566666666666555442 2234455555666667777777777777766654 3345566777


Q ss_pred             HHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchH
Q 047571          455 MIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALK  531 (681)
Q Consensus       455 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  531 (681)
                      ...+...|++++|...+++...   .+...+..+...+.+.|++++|+..|++..+.. +-+..++..+..++...|+++
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~  288 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            7777777777777777776553   344566667777888888888888888877653 334566777777888888888


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          532 LGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       532 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      +|...++...+.. +.+...+..+..++...|++++|...+++..+  |+ ..+|..+...|...|++++|++.|++..+
T Consensus       289 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888777653 44677788888899999999999999998776  44 66788899999999999999999999998


Q ss_pred             CCCCC-CHHHHHHHHHHHhccCC
Q 047571          609 GGFTP-NHFTFKVLLSICNQAGF  630 (681)
Q Consensus       609 ~g~~p-~~~~~~~l~~~~~~~g~  630 (681)
                      .  .| +...|..+..+|.+.||
T Consensus       368 l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         368 I--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             T--CTTCHHHHHHHHHHHHHTCC
T ss_pred             h--CCCCHHHHHHHHHHHHHcCC
Confidence            4  56 67889999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.5e-12  Score=119.00  Aligned_cols=268  Identities=11%  Similarity=0.009  Sum_probs=179.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 047571          383 ALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCG  462 (681)
Q Consensus       383 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  462 (681)
                      .....+.+.|++++|+..|++..+.. +-+...|..+..++...|+++.|...+....+.. +-+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            34566788889999999998888763 2245667777778888888888888888887764 335666777777788888


Q ss_pred             ChHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHH
Q 047571          463 VLDYSLKLFDEMEV--RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQV  540 (681)
Q Consensus       463 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  540 (681)
                      ++++|.+.+++...  |+.............                   ..+.......+..+...+...++...+...
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence            88888877776543  211100000000000                   000000111112223345566677777776


Q ss_pred             HHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHH
Q 047571          541 LKKDF-ASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHF  616 (681)
Q Consensus       541 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  616 (681)
                      .+... ..++.++..+...+...|++++|...+++...  | +...|..+...|...|++++|++.|++..+.. +-+..
T Consensus       163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~  241 (323)
T d1fcha_         163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIR  241 (323)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHH
Confidence            65432 33567778888888899999999999887655  4 36788899999999999999999999998852 33678


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhhhcC---------CCCCChhHHHHHHHHHhhcCCHHHHHH
Q 047571          617 TFKVLLSICNQAGFADEACRIFNVMSRGY---------KIEALEEHYLIMIDILTRFGRIEEAHR  672 (681)
Q Consensus       617 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~  672 (681)
                      .+..+..+|.+.|++++|++.|++..+-.         ........|..+..++...|+.+.+..
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            89999999999999999999999876521         111112456777777777777665543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-11  Score=117.82  Aligned_cols=233  Identities=9%  Similarity=-0.067  Sum_probs=162.8

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCCh
Q 047571          419 VIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIENGRL  495 (681)
Q Consensus       419 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~  495 (681)
                      ....+.+.|++++|...|+.+.+.. +-+...|..+..+|...|++++|...|++..+  | +...|..+...|...|++
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence            3445677888888888888887754 34566777788888888888888888877653  3 455677777778888888


Q ss_pred             hHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhC
Q 047571          496 DDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAV  575 (681)
Q Consensus       496 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  575 (681)
                      ++|.+.+++....  .|+.............                   ..+.......+..+...+.+.+|...+.++
T Consensus       104 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  162 (323)
T d1fcha_         104 RQACEILRDWLRY--TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA  162 (323)
T ss_dssp             HHHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHh--ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence            8888888877663  2322110000000000                   000000111122333445666777777655


Q ss_pred             CC-----CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          576 PV-----KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       576 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                      ..     .+...+..+...+...|++++|+..+++..... +-+...|..+..++...|++++|++.++...+.   .|+
T Consensus       163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~  238 (323)
T d1fcha_         163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPG  238 (323)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred             HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH---hhc
Confidence            43     345678888899999999999999999998853 346888999999999999999999999988764   343


Q ss_pred             -hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          651 -EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       651 -~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                       ...+..++.+|.+.|++++|++.+++.
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             678999999999999999999999874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=5.7e-08  Score=93.47  Aligned_cols=287  Identities=12%  Similarity=-0.002  Sum_probs=172.8

Q ss_pred             HHHHhCCChHHHHHHHHHHHHcCcCCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC-C----ChhHHHHHHH
Q 047571          386 SGYVSNGRLEQALRSIAWMQQEGFRPD----VVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL-P----NVSIITSLMI  456 (681)
Q Consensus       386 ~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~  456 (681)
                      ..+...|++++|+.++++..+.....+    ...+..+...+...|++++|...++...+.... +    ....+..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            344556666666666665554321111    123334444555666666666666655442110 1    1223344455


Q ss_pred             HHHhcCChHHHHHHHhhCCC-------CC----cchHHHHHHHHHhcCChhHHHHHHHHhHhCC----CCCCHHHHHHHH
Q 047571          457 MYSKCGVLDYSLKLFDEMEV-------RN----VISWTAMIDSCIENGRLDDALGVFRSMQLSK----HRPDSVAMARML  521 (681)
Q Consensus       457 ~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~~ll  521 (681)
                      .+...|++..+...+.+...       +.    ...+..+...+...|+++.+...+.......    .......+....
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            56666666666665554321       11    1234445566777777777777777665432    122233445555


Q ss_pred             HHhccccchHHHHHHHHHHHHc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-----hhhHHHHHH
Q 047571          522 SVSGQLKALKLGKEIHGQVLKK--DFASV----PFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-----SITWTAIIE  588 (681)
Q Consensus       522 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~l~~  588 (681)
                      ..+...++...+...+......  .....    ...+..+...+...|+.++|...++....  +.     ...+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            5666667777777776655542  11111    33455667788888999999999987766  11     335666888


Q ss_pred             HHHcCCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc---CCCCC----ChhHHHH
Q 047571          589 AYGYNDLCQEALSLFDKMRN----GGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSRG---YKIEA----LEEHYLI  656 (681)
Q Consensus       589 ~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~~  656 (681)
                      .+...|++++|...+++...    .+..| ....+..+..+|...|++++|.+.+++..+-   .|...    .......
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~  339 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ  339 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence            89999999999999998763    34445 3467888899999999999999999876431   12221    1244566


Q ss_pred             HHHHHhhcCCHHHHHH
Q 047571          657 MIDILTRFGRIEEAHR  672 (681)
Q Consensus       657 l~~~~~~~g~~~~A~~  672 (681)
                      ++..+...|+.+++.+
T Consensus       340 ~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         340 QLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHTTCSCHHHH
T ss_pred             HHHHHHhcCCChHHHH
Confidence            7777888888766643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.8e-08  Score=95.77  Aligned_cols=258  Identities=11%  Similarity=0.005  Sum_probs=188.4

Q ss_pred             HHHhhccCChhHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHH
Q 047571          420 IPVCSQLKALNHGKEIHAYAVKNQFLPN----VSIITSLMIMYSKCGVLDYSLKLFDEMEV-----RN----VISWTAMI  486 (681)
Q Consensus       420 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li  486 (681)
                      ...+...|++++|.+++++..+.....+    ...+..+...|...|++++|...+++..+     ++    ...+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            3456789999999999999887542211    24567778899999999999999988753     22    23556667


Q ss_pred             HHHHhcCChhHHHHHHHHhHh----CCCCCC---HHHHHHHHHHhccccchHHHHHHHHHHHHcCCC----CChhHHHHH
Q 047571          487 DSCIENGRLDDALGVFRSMQL----SKHRPD---SVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA----SVPFVAAEN  555 (681)
Q Consensus       487 ~~~~~~~~~~~A~~~~~~m~~----~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l  555 (681)
                      ..+...|++..+...+.+...    .+....   ...+..+...+...|+++.+...+.........    .....+...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            788899999999999887654    222221   124455667788899999999999888764322    223445556


Q ss_pred             HHHHHhcCCHHHHHHHhhhCCC-------CC---hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 047571          556 IKMYGMCGFLECAKLVFDAVPV-------KG---SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP---NHFTFKVLL  622 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~-------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~  622 (681)
                      ...+...++..++...+.+...       ..   ...+..+...+...|+.++|...+++..+.....   ....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            6777788888877766654332       11   3356667777888999999999999877643222   345677788


Q ss_pred             HHHhccCCHHHHHHHHHHhhhc---CCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          623 SICNQAGFADEACRIFNVMSRG---YKIEAL-EEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       623 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .++...|++++|.+.++.....   .+..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999987532   245554 567888999999999999999998764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=6.1e-08  Score=90.84  Aligned_cols=216  Identities=10%  Similarity=0.051  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHhhCCC---C-CcchHHHHHHHHH
Q 047571          429 LNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKC--------------GVLDYSLKLFDEMEV---R-NVISWTAMIDSCI  490 (681)
Q Consensus       429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~---~-~~~~~~~li~~~~  490 (681)
                      .+.+..+|+.+...- +-+...|-..+.-+.+.              +..++|..++++..+   | +...|...+..+.
T Consensus        32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            445666777766642 33444554444333221              223455555555432   1 2334555555556


Q ss_pred             hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCHHHHH
Q 047571          491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKM-YGMCGFLECAK  569 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~  569 (681)
                      +.|++++|..+|+++...........|...+..+.+.|+.+.|+++|+.+++.... +...+...+.. +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence            66666666666666655432222334555555555666666666666665554321 22233222222 22234555555


Q ss_pred             HHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          570 LVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGG-FTP--NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       570 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+|+.+..  | +...|...+..+...|++++|..+|++..+.. ..|  ....|...+..-...|+.+.+..+++++.+
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55554444  2 23445555555555555555555555554432 122  123444444444444555555555555544


Q ss_pred             cCC
Q 047571          644 GYK  646 (681)
Q Consensus       644 ~~~  646 (681)
                      .++
T Consensus       270 ~~~  272 (308)
T d2onda1         270 AFR  272 (308)
T ss_dssp             HTT
T ss_pred             HCc
Confidence            433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.1e-07  Score=88.99  Aligned_cols=127  Identities=10%  Similarity=0.017  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHH-HHHHHHHHhhccC-ChhHHHHHHHHHHHhCCCCChhHHHHHHH
Q 047571          379 ILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVV-TVATVIPVCSQLK-ALNHGKEIHAYAVKNQFLPNVSIITSLMI  456 (681)
Q Consensus       379 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  456 (681)
                      .+|+.+...+.+.+..++|+..+++..+.  .|+.. .|+....++...| ++++|...++...+.. +-+..+|..+..
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            35666666677777777888777777774  34443 3444444555544 4677777777766654 345566666666


Q ss_pred             HHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 047571          457 MYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLS  508 (681)
Q Consensus       457 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  508 (681)
                      .+.+.|++++|+..++++.+   .+...|..+...+...|++++|++.++++.+.
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~  175 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  175 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            66666777777666666654   24456666666666666666666666666664

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.2e-08  Score=92.77  Aligned_cols=143  Identities=10%  Similarity=0.001  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 047571          415 TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGV-LDYSLKLFDEMEV---RNVISWTAMIDSCI  490 (681)
Q Consensus       415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~li~~~~  490 (681)
                      .|+.+-..+.+.+..++|.++++.+++.+ +-+...|+....++...|+ +++|...++...+   .+..+|..+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            34455555667777888888888888765 4455566777777776654 7788877777653   34557777777777


Q ss_pred             hcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047571          491 ENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYG  560 (681)
Q Consensus       491 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  560 (681)
                      +.|++++|+..++++.+.. +-+...|..+...+...|+++.|...++.+++.+. .+...|+.+..++.
T Consensus       124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHH
Confidence            7788888888887777643 33456666677777777777777777777766542 12334444433333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=2.4e-07  Score=86.65  Aligned_cols=177  Identities=8%  Similarity=0.044  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C-cchHHHHHHHHHhcCChhHHHHHHHHh
Q 047571          430 NHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-N-VISWTAMIDSCIENGRLDDALGVFRSM  505 (681)
Q Consensus       430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~A~~~~~~m  505 (681)
                      +.|..+++...+...+.+...+..++..+.+.|+++.|..+|+.+.+  | + ...|...+..+.+.|+.++|.++|+++
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            55666666666544344455566666666677777777777766543  2 2 124666666666777777777777777


Q ss_pred             HhCCCCCCHHHHHHHHH-HhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C---C
Q 047571          506 QLSKHRPDSVAMARMLS-VSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K---G  579 (681)
Q Consensus       506 ~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~  579 (681)
                      .+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.++..+...++.+.+.|+++.|..+|++...  |   .
T Consensus       161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            665422 2222322222 2233466677777777766642 33466667777777777777777777776433  1   1


Q ss_pred             --hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          580 --SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       580 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                        ...|...+..-...|+.+.+.++++++.+
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              23566666666666777777777776655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=9.5e-08  Score=87.08  Aligned_cols=93  Identities=12%  Similarity=-0.014  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHh
Q 047571          415 TVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV--R-NVISWTAMIDSCIE  491 (681)
Q Consensus       415 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~  491 (681)
                      +|..+-..+.+.|++++|...|+...+.. +-+..+|..+..+|.+.|++++|+..|+++.+  | +..++..+..+|..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            34444556666777777777777766654 34556666777777777777777777776654  2 34456666677777


Q ss_pred             cCChhHHHHHHHHhHhC
Q 047571          492 NGRLDDALGVFRSMQLS  508 (681)
Q Consensus       492 ~~~~~~A~~~~~~m~~~  508 (681)
                      .|++++|...|++..+.
T Consensus       118 ~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHhh
Confidence            77777777777777664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=3.2e-07  Score=83.42  Aligned_cols=190  Identities=13%  Similarity=-0.004  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhc
Q 047571          449 SIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSG  525 (681)
Q Consensus       449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  525 (681)
                      .++..+..+|.+.|++++|+..|++..+   .++.+|..+..+|.+.|++++|+..|++..+.. +-+..++..+..++.
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            4666778899999999999999998774   356789999999999999999999999998863 334557778888889


Q ss_pred             cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCC--ChhhHHHHHHHHHcCCCh----HHH
Q 047571          526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVK--GSITWTAIIEAYGYNDLC----QEA  599 (681)
Q Consensus       526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~----~~a  599 (681)
                      ..|+++.|...++..++... .+......+...+.+.+..+.+..+.......  ....++ ++..+......    +.+
T Consensus       117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERL  194 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999988653 23444444555555666655555544433332  222222 22222222222    222


Q ss_pred             HHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          600 LSLFDKMRNGGFTP-NHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       600 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      ...+.....  ..| ...+|..+...+...|++++|++.|+....
T Consensus       195 ~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         195 KADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222222111  123 235677788899999999999999997765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=5.3e-08  Score=92.65  Aligned_cols=269  Identities=9%  Similarity=-0.016  Sum_probs=170.8

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHH-H---HHHHHhhccC-------ChhHHHHHHHHHHHhCCCCChh
Q 047571          381 WTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTV-A---TVIPVCSQLK-------ALNHGKEIHAYAVKNQFLPNVS  449 (681)
Q Consensus       381 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~---~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~  449 (681)
                      +..++....+.+..++|++++++..+.  .|+..+. +   .++..+...+       ++++|..+++...+.. +-+..
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~  108 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG  108 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence            333443334444558999999988874  4665543 2   2334444433       3567778888777754 44555


Q ss_pred             HHHHHHHHHHhcC--ChHHHHHHHhhCCC---CCcchHHH-HHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHH
Q 047571          450 IITSLMIMYSKCG--VLDYSLKLFDEMEV---RNVISWTA-MIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSV  523 (681)
Q Consensus       450 ~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  523 (681)
                      .+..+..++...+  ++++|...++++.+   ++...+.. ....+...+.+++|+..++++.... +-+...+..+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~  187 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            6666666666554  47788888887754   23444443 3356667788888998888887764 3456677777777


Q ss_pred             hccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHH
Q 047571          524 SGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEAL  600 (681)
Q Consensus       524 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~  600 (681)
                      +...|+++.|...+....+..    +. .......+...+..+++...+.....   ++...+..++..+...|+.++|+
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENVL----LK-ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHH----HH-HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHhH----HH-HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            788888877765554433321    11 12233344555666666666554433   33445566667777778888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHHHh
Q 047571          601 SLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDILT  662 (681)
Q Consensus       601 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~  662 (681)
                      ..+.+..+.+ +-+..++..+..++...|++++|+++++.+.+.   .|+ ..-|..|...+.
T Consensus       263 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l---dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         263 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV---DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CcccHHHHHHHHHHHh
Confidence            8888877642 225677888888888889999999999887653   554 445565655554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=9.3e-07  Score=81.65  Aligned_cols=98  Identities=12%  Similarity=-0.034  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC---hh
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-----NH-FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL---EE  652 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~  652 (681)
                      +|..+...+...|++++|++.|++........     .. ..+...+..+...|+++.|.+.++...+...--++   ..
T Consensus       160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~  239 (290)
T d1qqea_         160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN  239 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred             HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence            45666677777777777777777766542111     11 22334444556667777777777766543111111   12


Q ss_pred             HHHHHHHHHhh--cCCHHHHHHHHHhccC
Q 047571          653 HYLIMIDILTR--FGRIEEAHRFREMSSS  679 (681)
Q Consensus       653 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~  679 (681)
                      ....++.++-.  .+.+++|+..++++..
T Consensus       240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         240 FLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            34445555443  2346777776665543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=4.2e-07  Score=86.25  Aligned_cols=257  Identities=12%  Similarity=-0.051  Sum_probs=174.9

Q ss_pred             CCHHHHHHHHhhcCC--C-ChhhHHHHHHH----------HHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhcc-
Q 047571          361 RDMNSAWRVFYETEE--R-NEILWTALMSG----------YVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQL-  426 (681)
Q Consensus       361 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~----------~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-  426 (681)
                      +..++|.++++...+  | +...|+..-..          +...|++++|+..++...+.. +-+...+..+..++... 
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence            334677777776653  3 22334332222          223445788999999887753 22444455454444444 


Q ss_pred             -CChhHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChhHHHHH
Q 047571          427 -KALNHGKEIHAYAVKNQFLPNVSII-TSLMIMYSKCGVLDYSLKLFDEMEVR---NVISWTAMIDSCIENGRLDDALGV  501 (681)
Q Consensus       427 -~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~  501 (681)
                       ++.+.|...+..+.... +++...+ ......+...+..++|...++.+.+.   +...|+.+..++.+.|++++|...
T Consensus       122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence             45889999999988875 3344444 44556777889999999999998873   456788888899999999888766


Q ss_pred             HHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC--
Q 047571          502 FRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG--  579 (681)
Q Consensus       502 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--  579 (681)
                      ++.....  .|+.   ......+...+..+.+...+....... .+....+..+...+...|+.++|...+.+....+  
T Consensus       201 ~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  274 (334)
T d1dcea1         201 GRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW  274 (334)
T ss_dssp             CSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence            5544432  1211   223333455566777777777776654 3345556677888888999999999999888844  


Q ss_pred             -hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhc
Q 047571          580 -SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPN-HFTFKVLLSICNQ  627 (681)
Q Consensus       580 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~  627 (681)
                       ..+|..+...+...|++++|++.+++..+  +.|+ ..-|..|...+.-
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHhH
Confidence             56778888999999999999999999999  4674 5566666555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-06  Score=74.48  Aligned_cols=122  Identities=13%  Similarity=-0.056  Sum_probs=100.7

Q ss_pred             HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047571          556 IKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEAC  635 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~  635 (681)
                      ...+...|++++|.+.|+++..++..+|..+...|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4456788999999999999888888889999999999999999999999999853 447888999999999999999999


Q ss_pred             HHHHHhhhcCC-----------C--CCC-hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          636 RIFNVMSRGYK-----------I--EAL-EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       636 ~~~~~~~~~~~-----------~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      +.|++......           .  .++ ...+..+..++.+.|++++|.+.+++..
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99998754211           1  111 3566778889999999999999888653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=5.3e-06  Score=68.32  Aligned_cols=114  Identities=11%  Similarity=-0.044  Sum_probs=80.7

Q ss_pred             HHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 047571          556 IKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFAD  632 (681)
Q Consensus       556 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~  632 (681)
                      ...|.+.|++++|...|+++..  | +...|..+...|...|++++|+..|++.++.. +-+...|..++.++...|+++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence            4456677888888888877666  3 36678888888888889999999888888853 346778888888888889999


Q ss_pred             HHHHHHHHhhhcCCCCCC-hhHHHHHHHH--HhhcCCHHHHHHH
Q 047571          633 EACRIFNVMSRGYKIEAL-EEHYLIMIDI--LTRFGRIEEAHRF  673 (681)
Q Consensus       633 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~--~~~~g~~~~A~~~  673 (681)
                      +|.+.+++..+.   .|+ ...+..+..+  +...+.+++|...
T Consensus        96 eA~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          96 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            998888888764   333 4444444333  3344455555543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=3.3e-05  Score=70.91  Aligned_cols=127  Identities=9%  Similarity=-0.042  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHc----CcCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCC-----CChhH
Q 047571          381 WTALMSGYVSNGRLEQALRSIAWMQQE----GFRP-DVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFL-----PNVSI  450 (681)
Q Consensus       381 ~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~  450 (681)
                      |......|...|++++|.+.|.+..+.    +-.+ -..+|..+..++.+.|++++|.+.++........     ....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            334455666777777777777665442    1111 1234555566666667777776666654432100     01222


Q ss_pred             HHHHHHHHHh-cCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHhHh
Q 047571          451 ITSLMIMYSK-CGVLDYSLKLFDEMEV-----RN----VISWTAMIDSCIENGRLDDALGVFRSMQL  507 (681)
Q Consensus       451 ~~~l~~~~~~-~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~  507 (681)
                      +..+...|.. .|++++|.+.+++..+     .+    ..+|..+...+...|++++|+..|++...
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            3333333422 3555555555544321     00    11344444445555555555555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=6.7e-06  Score=70.96  Aligned_cols=95  Identities=11%  Similarity=-0.129  Sum_probs=77.8

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 047571          547 SVPFVAAENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLL  622 (681)
Q Consensus       547 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~  622 (681)
                      |+...+......|.+.|++++|...|+++..  | +...|+.+..+|.+.|++++|+..|++.++.  .| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHH
Confidence            5566667778888889999999999987665  3 4677888888888999999999999988874  55 677888888


Q ss_pred             HHHhccCCHHHHHHHHHHhhh
Q 047571          623 SICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       623 ~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+|.+.|++++|+..|+.+.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            899999999999998887765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1e-05  Score=62.36  Aligned_cols=89  Identities=12%  Similarity=-0.042  Sum_probs=65.4

Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF  630 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~  630 (681)
                      .-...+.+.|++++|...|+++..  | +...|..+..+|...|++++|+..+++..+.+ +.+...|..+..++...|+
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            345667777888888888877655  3 35667777777778888888888888877753 4467777777778888888


Q ss_pred             HHHHHHHHHHhhh
Q 047571          631 ADEACRIFNVMSR  643 (681)
Q Consensus       631 ~~~A~~~~~~~~~  643 (681)
                      +++|+..++...+
T Consensus        87 ~~~A~~~~~~a~~   99 (117)
T d1elwa_          87 FEEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888876664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.3e-05  Score=61.71  Aligned_cols=89  Identities=16%  Similarity=-0.006  Sum_probs=57.4

Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcCC
Q 047571          587 IEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFGR  666 (681)
Q Consensus       587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  666 (681)
                      ...+...|++++|+..|++..+.. +-+...|..+..++.+.|++++|++.++...+.  .+.+...|..++.++...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHccC
Confidence            445666677777777777776642 335666777777777777777777777766653  12235666677777777777


Q ss_pred             HHHHHHHHHhcc
Q 047571          667 IEEAHRFREMSS  678 (681)
Q Consensus       667 ~~~A~~~~~~~~  678 (681)
                      +++|+..+++..
T Consensus        87 ~~~A~~~~~~a~   98 (117)
T d1elwa_          87 FEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.5e-05  Score=64.09  Aligned_cols=153  Identities=10%  Similarity=-0.062  Sum_probs=92.7

Q ss_pred             HHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHH
Q 047571          455 MIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGK  534 (681)
Q Consensus       455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  534 (681)
                      ...+...|+++.|++.|.++..++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            3445677888888888888877777788888888888888888888888887754 344556667777777777777777


Q ss_pred             HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC-CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047571          535 EIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV-KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP  613 (681)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  613 (681)
                      ..|++.++.........+       ...|.          ... ....++..+..++...|++++|.+.+++..+....+
T Consensus        91 ~~~~kAl~~~~~n~~~~~-------~~~~~----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDY-------KILGL----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHTTTTCSEEEC-------GGGTB----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHhCccCchHHH-------HHhhh----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            777776543111000000       00000          000 001234455566667777777777777776654444


Q ss_pred             CHHHHHHHHHHH
Q 047571          614 NHFTFKVLLSIC  625 (681)
Q Consensus       614 ~~~~~~~l~~~~  625 (681)
                      ........+..+
T Consensus       154 ~~~~~~~Al~~~  165 (192)
T d1hh8a_         154 RHSKIDKAMECV  165 (192)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             chHHHHHHHHHH
Confidence            333444444433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.12  E-value=8.8e-06  Score=62.07  Aligned_cols=89  Identities=9%  Similarity=-0.200  Sum_probs=73.9

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhh
Q 047571          585 AIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTR  663 (681)
Q Consensus       585 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  663 (681)
                      .+...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..++...+.   .| +...+..++.+|..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHH
Confidence            45667788999999999999988853 337888999999999999999999999988763   44 47888889999999


Q ss_pred             cCCHHHHHHHHHhc
Q 047571          664 FGRIEEAHRFREMS  677 (681)
Q Consensus       664 ~g~~~~A~~~~~~~  677 (681)
                      .|+.++|.+.+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998874

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=0.0027  Score=57.99  Aligned_cols=284  Identities=9%  Similarity=0.007  Sum_probs=145.4

Q ss_pred             CChhhHHHHHHHHhhhhhhcccchhhhhhhhccCCCCCchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHH
Q 047571          309 PNSVVLTILLPVIGEAWARKLGQEVHAYVLKNERYSEELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGY  388 (681)
Q Consensus       309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  388 (681)
                      ||..-...+...|.+.|.++.|..++..+...          ..++..+.+.++++.|.+.+....  +..+|..+...+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~----------~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l   79 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC   79 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTCH----------HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCCH----------HHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence            34444444555555666666666666544433          567778888888888888776553  555777778888


Q ss_pred             HhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047571          389 VSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSL  468 (681)
Q Consensus       389 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  468 (681)
                      .+.....-|     .+...+...+......++..+...|.++....+++..... -..+...++-++..|++.+ .++..
T Consensus        80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~  152 (336)
T d1b89a_          80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMR  152 (336)
T ss_dssp             HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred             HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHH
Confidence            777665443     2223334456666677888888888888888888876533 2567777888888888865 44555


Q ss_pred             HHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCC--------CCCCHHHHHHHHHHhccccchHHHHHHHHHH
Q 047571          469 KLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSK--------HRPDSVAMARMLSVSGQLKALKLGKEIHGQV  540 (681)
Q Consensus       469 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  540 (681)
                      +.+.....  ..-..-++..|.+.+-++++.-++.++....        ..++..-....+..+.+.++.+...+.....
T Consensus       153 e~l~~~s~--~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y  230 (336)
T d1b89a_         153 EHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY  230 (336)
T ss_dssp             HHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred             HHHHhccc--cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence            55544321  1222233444444444444444444332100        0122111222333344444444433333333


Q ss_pred             HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047571          541 LKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKV  620 (681)
Q Consensus       541 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  620 (681)
                      ++.    .|...+.++......-+..+                  ++..+.+.+++.-....++...+.|   +....+.
T Consensus       231 L~~----~p~~i~~lL~~v~~~~d~~r------------------~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~a  285 (336)
T d1b89a_         231 LEF----KPLLLNDLLMVLSPRLDHTR------------------AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNES  285 (336)
T ss_dssp             HHH----CGGGHHHHHHHHGGGCCHHH------------------HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHH
T ss_pred             HHc----CHHHHHHHHHHhccCCCHHH------------------HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHH
Confidence            321    12223333333333333333                  3333344556666666666655544   3456777


Q ss_pred             HHHHHhccCCHHHHHHHH
Q 047571          621 LLSICNQAGFADEACRIF  638 (681)
Q Consensus       621 l~~~~~~~g~~~~A~~~~  638 (681)
                      |...|...++++.-.+..
T Consensus       286 l~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         286 LNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCcchhHHHHHHH
Confidence            777787777765544433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=8.5e-06  Score=62.94  Aligned_cols=92  Identities=8%  Similarity=-0.104  Sum_probs=66.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047571          553 AENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYND---LCQEALSLFDKMRNGGFTPN-HFTFKVLLSIC  625 (681)
Q Consensus       553 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~  625 (681)
                      ..++..+...+++++|++.|++...  | +..++..+..++.+.+   ++++|+.+++++...+..|+ ..++..+..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4567777788888888888887776  3 4567777888877644   44568888888877542333 24677788888


Q ss_pred             hccCCHHHHHHHHHHhhhc
Q 047571          626 NQAGFADEACRIFNVMSRG  644 (681)
Q Consensus       626 ~~~g~~~~A~~~~~~~~~~  644 (681)
                      .+.|++++|+++|+.+.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            8888888888888877763

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.7e-05  Score=68.31  Aligned_cols=97  Identities=8%  Similarity=-0.075  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHH
Q 047571          511 RPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAII  587 (681)
Q Consensus       511 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~  587 (681)
                      .|+...+......+.+.|+++.|...|.+.++.. +.++..|..+..+|.+.|++++|...|+++..  |+ ..+|..+.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            3777788888899999999999999999999875 44688999999999999999999999999888  54 67899999


Q ss_pred             HHHHcCCChHHHHHHHHHHHh
Q 047571          588 EAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       588 ~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      .+|...|++++|+..|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.9e-05  Score=63.65  Aligned_cols=92  Identities=10%  Similarity=-0.038  Sum_probs=79.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDIL  661 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~  661 (681)
                      +......|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|++.|+.+.+.   .| +...|..++.+|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHH
Confidence            3445677889999999999999999964 448899999999999999999999999988864   34 468899999999


Q ss_pred             hhcCCHHHHHHHHHhcc
Q 047571          662 TRFGRIEEAHRFREMSS  678 (681)
Q Consensus       662 ~~~g~~~~A~~~~~~~~  678 (681)
                      ...|++++|.+.+++..
T Consensus        89 ~~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          89 MALGKFRAALRDYETVV  105 (159)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            99999999999988754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.94  E-value=1.9e-05  Score=60.18  Aligned_cols=87  Identities=16%  Similarity=0.029  Sum_probs=73.4

Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGF  630 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~  630 (681)
                      .....+.+.|++++|...|+++..  | +..+|..+..++.+.|++++|+..|++..+.. +.+...+..+...|...|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            355667778888888888887766  4 37788999999999999999999999999853 4478899999999999999


Q ss_pred             HHHHHHHHHHh
Q 047571          631 ADEACRIFNVM  641 (681)
Q Consensus       631 ~~~A~~~~~~~  641 (681)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.2e-05  Score=60.54  Aligned_cols=93  Identities=10%  Similarity=-0.005  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-----hhHHHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-----EEHYLIM  657 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l  657 (681)
                      +..+...+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|++.++++.+...-.+.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            4556677777888888888888887753 446777777888888888888888888776542111111     2466677


Q ss_pred             HHHHhhcCCHHHHHHHHHh
Q 047571          658 IDILTRFGRIEEAHRFREM  676 (681)
Q Consensus       658 ~~~~~~~g~~~~A~~~~~~  676 (681)
                      +.++...|++++|++++++
T Consensus        86 g~~~~~~~~~~~A~~~~~k  104 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNK  104 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHH
Confidence            7777788888888887765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=0.002  Score=58.91  Aligned_cols=278  Identities=9%  Similarity=0.003  Sum_probs=155.6

Q ss_pred             CchHHhHHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc
Q 047571          346 ELFVRSSLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ  425 (681)
Q Consensus       346 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  425 (681)
                      +..-...+.+.|.+.|.++.|..+|..+..     |..++..+.+.+++..|.+.+.+.      -+..+|..+..+|.+
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~   81 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD   81 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence            444445667777788999999999887654     777888889999999988877643      255677778888777


Q ss_pred             cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChhHHHHHH
Q 047571          426 LKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEV---RNVISWTAMIDSCIENGRLDDALGVF  502 (681)
Q Consensus       426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~  502 (681)
                      ......+     .+.......+......++..|...|.+++...+++....   .+...++-++..|++.+ .++.++.+
T Consensus        82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l  155 (336)
T d1b89a_          82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL  155 (336)
T ss_dssp             TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence            6655432     222233345556667788899999999999999987543   45567788888888764 33333333


Q ss_pred             HHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhh
Q 047571          503 RSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSIT  582 (681)
Q Consensus       503 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  582 (681)
                      +..   +-..|.   ..++..|...+-                      |..++..|.+.|.++.|..++-.-. ++..-
T Consensus       156 ~~~---s~~y~~---~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~  206 (336)
T d1b89a_         156 ELF---WSRVNI---PKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMNHP-TDAWK  206 (336)
T ss_dssp             HHH---STTSCH---HHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHHST-TTTCC
T ss_pred             Hhc---cccCCH---HHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHHcc-hhhhh
Confidence            322   112221   233444444433                      3345555666666666655543211 11112


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHH-----------HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCh
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFT-----------FKVLLSICNQAGFADEACRIFNVMSRGYKIEALE  651 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  651 (681)
                      ....+..+.+.++.+...++.....+.  .|+...           -.-++..+.+.+++.....+++..... +   +.
T Consensus       207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~-n---~~  280 (336)
T d1b89a_         207 EGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-N---NK  280 (336)
T ss_dssp             HHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-C---CH
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc-C---hH
Confidence            233455555556655555555444431  232110           122344445555555556666554432 3   24


Q ss_pred             hHHHHHHHHHhhcCCHHHHHHHHH
Q 047571          652 EHYLIMIDILTRFGRIEEAHRFRE  675 (681)
Q Consensus       652 ~~~~~l~~~~~~~g~~~~A~~~~~  675 (681)
                      ...++|.+.|...+|++.=++.++
T Consensus       281 ~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         281 SVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcchhHHHHHHHH
Confidence            689999999999999776555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.4e-05  Score=58.78  Aligned_cols=89  Identities=6%  Similarity=-0.155  Sum_probs=53.8

Q ss_pred             HHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHhhhCCC--CC---hhhHHHHHHHH
Q 047571          519 RMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCG---FLECAKLVFDAVPV--KG---SITWTAIIEAY  590 (681)
Q Consensus       519 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~--~~---~~~~~~l~~~~  590 (681)
                      .+++.+...+++++|.+.|+..++.+ +.++.++..+..++.+.+   ++++|..+++++..  |+   ..+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45556666666777777777666654 334566666666665543   33456666666554  21   12455566666


Q ss_pred             HcCCChHHHHHHHHHHHh
Q 047571          591 GYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       591 ~~~~~~~~a~~~~~~m~~  608 (681)
                      .+.|++++|++.|+++.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHH
Confidence            667777777777777666

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.75  E-value=0.0029  Score=56.40  Aligned_cols=224  Identities=9%  Similarity=-0.044  Sum_probs=121.2

Q ss_pred             CchhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCCchhHHH
Q 047571           71 NPRAIYKDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVR----TRSLVEGRLIHTHIRINGLENNGFLRT  146 (681)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  146 (681)
                      ||.++..+-..+.+.+++.+|++.|++..+.|   +...+..|...+..    ..+...|...+......+ .+  ....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~--~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YS--NGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CH--HHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-cc--chhh
Confidence            56788888888999999999999999998887   56677777777765    557888888888887766 22  2223


Q ss_pred             HHHHHhh----cCCChhHHHHhhhhcCCCCCcc-HHHHHHHHHH--cCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047571          147 KLVKMYT----SCGSFEDAEKVFDESSSESVYP-WNALLRGAVI--AGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKS  219 (681)
Q Consensus       147 ~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  219 (681)
                      .+...+.    ...+.+.|...++.....+... ...+...+..  ........+...+......   .+...+..+...
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~  151 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence            3333332    2456677777776554333222 2222222221  1122444555555544432   234444444444


Q ss_pred             hhc----cCchhhhHHHHHHHHHhCCCCCcHHHhHHHHHHHh----cCChHHHHHHHhccCC-CChhhHHHHHHHHHh--
Q 047571          220 FAG----ASALMQGLKTHALLIKNGFVDYLILRTSLIDMYFK----CGKIKLARRVFDETGD-RDIVVWGSMIAGFAH--  288 (681)
Q Consensus       220 ~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~--  288 (681)
                      +..    ..+...+...++...+.|   +......+...|..    ..+.++|...|+...+ .++..+..|...|.+  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCC
Confidence            442    234444444444444433   23333333333333    3455556655554433 244444444444443  


Q ss_pred             --cCChHHHHHHHHHHHHcC
Q 047571          289 --NRLRWEALDCARWMIREG  306 (681)
Q Consensus       289 --~~~~~~a~~~~~~m~~~g  306 (681)
                        ..+.+.|.++|++..+.|
T Consensus       229 g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHT
T ss_pred             CCccCHHHHHHHHHHHHHCc
Confidence              224555555555555544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=0.0021  Score=57.37  Aligned_cols=228  Identities=13%  Similarity=-0.061  Sum_probs=104.6

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhCCCCChhHHHH
Q 047571          378 EILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQ----LKALNHGKEIHAYAVKNQFLPNVSIITS  453 (681)
Q Consensus       378 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  453 (681)
                      +..+..|...+...+++++|++.|++..+.|   +...+..|-..+..    ..+...+...+......+   +......
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~   75 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence            3455556666667777777777777776665   33333333333332    345556666665555544   1122222


Q ss_pred             HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHH-HHHhccccchHH
Q 047571          454 LMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARM-LSVSGQLKALKL  532 (681)
Q Consensus       454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~  532 (681)
                      +...+...                           ....++.+.|...++...+.|.......+... ............
T Consensus        76 l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~  128 (265)
T d1ouva_          76 LGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK  128 (265)
T ss_dssp             HHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHH
Confidence            22222110                           00122344444444444443321111111000 000111223333


Q ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHc----CCChHHHHHHH
Q 047571          533 GKEIHGQVLKKDFASVPFVAAENIKMYGM----CGFLECAKLVFDAVPV-KGSITWTAIIEAYGY----NDLCQEALSLF  603 (681)
Q Consensus       533 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~  603 (681)
                      +...+......   .+...+..+...|..    ..+...+...++...+ .+..+...+...|..    ..++++|+.+|
T Consensus       129 a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~  205 (265)
T d1ouva_         129 AVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY  205 (265)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             HHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence            33443333332   233344444444443    2334444544444433 234444445444443    45777788888


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhhc
Q 047571          604 DKMRNGGFTPNHFTFKVLLSICNQ----AGFADEACRIFNVMSRG  644 (681)
Q Consensus       604 ~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  644 (681)
                      ++..+.|   ++..+..|...|.+    ..+.++|.++|+...+.
T Consensus       206 ~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         206 SKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             hhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            7777765   34445555555554    23566777777766553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=0.00042  Score=57.39  Aligned_cols=78  Identities=9%  Similarity=-0.005  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh----cCCCCCChhHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR----GYKIEALEEHYLI  656 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~  656 (681)
                      ..+..+...+...|++++|+..++++.+.. +-+...|..++.+|.+.|+..+|++.|+++.+    .+|+.|...+-..
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l  146 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  146 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence            467888999999999999999999999953 44889999999999999999999999998744    4699998765443


Q ss_pred             HHH
Q 047571          657 MID  659 (681)
Q Consensus       657 l~~  659 (681)
                      .-.
T Consensus       147 ~~~  149 (179)
T d2ff4a2         147 NER  149 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00035  Score=57.58  Aligned_cols=83  Identities=8%  Similarity=-0.149  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHH
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMID  659 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~  659 (681)
                      .+|+.+..+|.+.|++++|+..+++.++.. |.+..++..+..+|...|++++|+..|+...+.   .| +......+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---~P~n~~~~~~l~~  138 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence            367778889999999999999999999853 448889999999999999999999999988764   44 3555555655


Q ss_pred             HHhhcCCH
Q 047571          660 ILTRFGRI  667 (681)
Q Consensus       660 ~~~~~g~~  667 (681)
                      +..+.+..
T Consensus       139 ~~~~~~~~  146 (170)
T d1p5qa1         139 CQQRIRRQ  146 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.8e-05  Score=77.44  Aligned_cols=107  Identities=4%  Similarity=-0.135  Sum_probs=45.7

Q ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHc
Q 047571          516 AMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPV--KG-SITWTAIIEAYGY  592 (681)
Q Consensus       516 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~  592 (681)
                      .+..+...+.+.|+.+.|...+....+..   ....+..+..++...|++++|...|+++..  |+ ...|+.|...+..
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            34444444555555555555544443321   123444555556666666666666665544  33 4456666666666


Q ss_pred             CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047571          593 NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICN  626 (681)
Q Consensus       593 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  626 (681)
                      .|+..+|+..|.+..... +|-..++..|...+.
T Consensus       199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            666666666666665543 445555555555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00025  Score=55.24  Aligned_cols=90  Identities=11%  Similarity=-0.069  Sum_probs=59.8

Q ss_pred             HHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCC-----HHHHHHHHHH
Q 047571          554 ENIKMYGMCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGF-TPN-----HFTFKVLLSI  624 (681)
Q Consensus       554 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-----~~~~~~l~~~  624 (681)
                      .+...|...|++++|...|.+...  | +...|..+..+|...|++++|+..++++++... .+.     ..+|..+...
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            345556666666666666665554  2 356677777788888888888888887765310 011     2466677777


Q ss_pred             HhccCCHHHHHHHHHHhhh
Q 047571          625 CNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       625 ~~~~g~~~~A~~~~~~~~~  643 (681)
                      +...+++++|++.|+....
T Consensus        89 ~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            8888888888888876654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.45  E-value=0.0011  Score=54.38  Aligned_cols=82  Identities=10%  Similarity=-0.064  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHHHHH
Q 047571          582 TWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIMIDI  660 (681)
Q Consensus       582 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~  660 (681)
                      .|+.+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|++.|+.+.+   +.|+ ......+..+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~---l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence            56778888899999999999999999853 55888999999999999999999999998875   3444 5566666666


Q ss_pred             HhhcCCH
Q 047571          661 LTRFGRI  667 (681)
Q Consensus       661 ~~~~g~~  667 (681)
                      ..+.+..
T Consensus       142 ~~~~~~~  148 (168)
T d1kt1a1         142 QKKAKEH  148 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhH
Confidence            5555443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.45  E-value=0.00057  Score=56.26  Aligned_cols=86  Identities=7%  Similarity=-0.181  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHH
Q 047571          580 SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMI  658 (681)
Q Consensus       580 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~  658 (681)
                      ...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++...|++++|++.|+...+-   .| +......+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l---~p~n~~~~~~l~  152 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence            4467778889999999999999999999853 447889999999999999999999999988764   44 355666666


Q ss_pred             HHHhhcCCHHH
Q 047571          659 DILTRFGRIEE  669 (681)
Q Consensus       659 ~~~~~~g~~~~  669 (681)
                      .+..+.....+
T Consensus       153 ~~~~~l~~~~~  163 (169)
T d1ihga1         153 KVKQKIKAQKD  163 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            65544443333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0013  Score=54.06  Aligned_cols=126  Identities=10%  Similarity=-0.130  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGM  561 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  561 (681)
                      +......+.+.|++++|+..|.+....--...              +..+.-......+       -..+|..+..+|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQAL-------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence            44455678888999999999988775311000              0000000111111       12356678888999


Q ss_pred             cCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCC
Q 047571          562 CGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTP-NHFTFKVLLSICNQAGF  630 (681)
Q Consensus       562 ~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~  630 (681)
                      .|++++|...++.+..  | ++.+|..+..+|...|++++|+..|++..+.  .| |......+..+..+.+.
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence            9999999999988776  4 5778899999999999999999999999984  55 66666555555444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.32  E-value=0.0016  Score=52.23  Aligned_cols=102  Identities=12%  Similarity=-0.066  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHhhhCCC--------CC-----------hhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047571          552 AAENIKMYGMCGFLECAKLVFDAVPV--------KG-----------SITWTAIIEAYGYNDLCQEALSLFDKMRNGGFT  612 (681)
Q Consensus       552 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  612 (681)
                      +..-...+.+.|++++|...|.++..        .+           ..+|+.+..+|.+.|++++|++.+++..+.+ +
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p   98 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K   98 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence            44556677888999999988876543        11           2356778888889999999999999988853 4


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHHHH
Q 047571          613 PNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYLIM  657 (681)
Q Consensus       613 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l  657 (681)
                      .+..+|..+..++...|++++|+..|+...+-   .|+ ......+
T Consensus        99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---~P~n~~~~~~l  141 (153)
T d2fbna1          99 NNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSY  141 (153)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHH
T ss_pred             hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence            47888999999999999999999999987764   454 4444444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.0016  Score=53.76  Aligned_cols=59  Identities=10%  Similarity=-0.013  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          616 FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEA-LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       616 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      ..+..+..++.+.|++++|+..++.+.+.   .| +...|..++.+|.+.|+.++|++.|+++
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~---~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45778899999999999999999999874   44 5788999999999999999999999886

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.20  E-value=0.0012  Score=53.18  Aligned_cols=92  Identities=11%  Similarity=-0.101  Sum_probs=48.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCC----CCC-----------HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGGF----TPN-----------HFTFKVLLSICNQAGFADEACRIFNVMSRGYKI  647 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  647 (681)
                      +..-...+.+.|++++|+..|++..+.-.    .++           ..+|..+..+|.+.|++++|++.++...+.   
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~---   96 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI---   96 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc---
Confidence            33444455556666666666665553210    001           124445555666666666666666655442   


Q ss_pred             CC-ChhHHHHHHHHHhhcCCHHHHHHHHHhc
Q 047571          648 EA-LEEHYLIMIDILTRFGRIEEAHRFREMS  677 (681)
Q Consensus       648 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  677 (681)
                      .| +...|..++.+|...|++++|+..|++.
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            23 3455666666666666666666655543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.11  E-value=0.00081  Score=54.37  Aligned_cols=97  Identities=14%  Similarity=-0.030  Sum_probs=68.2

Q ss_pred             hHHHH--HHHHHcCCChHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc----
Q 047571          582 TWTAI--IEAYGYNDLCQEALSLFDKMRNGGF-TP----------NHFTFKVLLSICNQAGFADEACRIFNVMSRG----  644 (681)
Q Consensus       582 ~~~~l--~~~~~~~~~~~~a~~~~~~m~~~g~-~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  644 (681)
                      +|..+  ...+...|++++|+..|++.++..- .|          ...+|..+..+|.+.|++++|.+.+++..+-    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            45555  4455667888888888888875210 01          1467888889999999999999888877542    


Q ss_pred             CCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhcc
Q 047571          645 YKIEAL-----EEHYLIMIDILTRFGRIEEAHRFREMSS  678 (681)
Q Consensus       645 ~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  678 (681)
                      ....++     ...+..++.+|.+.|++++|.+.+++..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            122222     2346778899999999999999888743

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00023  Score=70.65  Aligned_cols=227  Identities=7%  Similarity=-0.044  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcch-HHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 047571          431 HGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVIS-WTAMIDSCIENGRLDDALGVFRSMQLSK  509 (681)
Q Consensus       431 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g  509 (681)
                      +|.+.++++.+.. +.....+..+..++...|++++|   ++++...|+.. ...-+....-...+..+.+.++...+..
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~   79 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR   79 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5778888877643 11233444456666666777665   44443322211 0000111111122455677777776655


Q ss_pred             CCCCHHHHHHHHHHh--ccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCC-hhhHHHH
Q 047571          510 HRPDSVAMARMLSVS--GQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKG-SITWTAI  586 (681)
Q Consensus       510 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l  586 (681)
                      -.++..-....+..+  ...+.++.+...+....+.. ..+...+..+...+.+.|+.++|...+.....++ ..++..+
T Consensus        80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~L  158 (497)
T d1ya0a1          80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL  158 (497)
T ss_dssp             SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence            444433322222221  12233444443333322221 2235567778888889999999998887766544 3467778


Q ss_pred             HHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHhhcC
Q 047571          587 IEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMIDILTRFG  665 (681)
Q Consensus       587 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  665 (681)
                      ...+...|++++|+..|++..+.. |-+...|+.|...+...|+..+|+..|.+....  ..|-...+..|...+.+..
T Consensus       159 G~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         159 GDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhh
Confidence            889999999999999999999852 347799999999999999999999999988763  3455778888888876554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.01  E-value=0.0021  Score=52.72  Aligned_cols=124  Identities=7%  Similarity=-0.092  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHH
Q 047571          482 WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFA-SVPFVAAENIKMYG  560 (681)
Q Consensus       482 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~  560 (681)
                      +......+...|++++|++.|.+..+.            .............         ..+. .....+..+..+|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~nla~~~~   88 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG---------AKLQPVALSCVLNIGACKL   88 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH---------GGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH---------HHhChhhHHHHHHHHHHHH
Confidence            445566678889999999888877541            0000000000000         0011 13456677888999


Q ss_pred             hcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 047571          561 MCGFLECAKLVFDAVPV--K-GSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ  627 (681)
Q Consensus       561 ~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  627 (681)
                      +.|++++|...++++..  | +..+|..+..++...|++++|++.|++..+.. +.|......+..+..+
T Consensus        89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK  157 (169)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            99999999999998877  3 47789999999999999999999999999953 3366666655554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.97  E-value=0.0016  Score=51.59  Aligned_cols=127  Identities=10%  Similarity=0.029  Sum_probs=86.2

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047571           82 FARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRT----------RSLVEGRLIHTHIRINGLENNGFLRTKLVKM  151 (681)
Q Consensus        82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  151 (681)
                      |-+.+.+++|+..|+...+.. |.++.++..+..++...          +.+++|...|++..+.. +.+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            455677999999999998875 55788888888887754          34567888888888876 6677788888887


Q ss_pred             hhcCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHH
Q 047571          152 YTSCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLK  231 (681)
Q Consensus       152 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  231 (681)
                      |...|++.........                      .+..|...|++..+.  .|+...|...+..+      ..|.+
T Consensus        85 y~~~g~~~~~~~~~~~----------------------~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~  134 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKH----------------------NFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQ  134 (145)
T ss_dssp             HHHHHHHCCCHHHHHH----------------------HHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHH
T ss_pred             HHHcccchhhHHHHHH----------------------hHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHH
Confidence            7765543211111111                      567777788776654  67777766555544      45566


Q ss_pred             HHHHHHHhC
Q 047571          232 THALLIKNG  240 (681)
Q Consensus       232 ~~~~~~~~g  240 (681)
                      ++.+..+.|
T Consensus       135 ~~~e~~k~~  143 (145)
T d1zu2a1         135 LHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHh
Confidence            666666655

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.94  E-value=0.0078  Score=48.97  Aligned_cols=136  Identities=10%  Similarity=-0.083  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhC---CCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLS---KHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIK  557 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  557 (681)
                      .+.-....+.+.|++++|+..|++....   ....+..                 .......+       ...+|..+..
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nla~   72 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNLAM   72 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhHHH
Confidence            4555667788889999999988876541   1111100                 00111111       1235666788


Q ss_pred             HHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH-H
Q 047571          558 MYGMCGFLECAKLVFDAVPV---KGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFAD-E  633 (681)
Q Consensus       558 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~-~  633 (681)
                      +|.+.|++++|...++.+..   .+..+|..+..++...|++++|+..|+++.+.. |.+......+.....+.+... .
T Consensus        73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~  151 (168)
T d1kt1a1          73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNER  151 (168)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHH
Confidence            88999999999999988776   347788899999999999999999999999853 346666666655554444333 3


Q ss_pred             HHHHHHHh
Q 047571          634 ACRIFNVM  641 (681)
Q Consensus       634 A~~~~~~~  641 (681)
                      ..+.+..|
T Consensus       152 ~kk~~~~~  159 (168)
T d1kt1a1         152 DRRTYANM  159 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            34444444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.91  E-value=0.00035  Score=62.01  Aligned_cols=50  Identities=14%  Similarity=0.038  Sum_probs=23.7

Q ss_pred             cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCC
Q 047571          526 QLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVP  576 (681)
Q Consensus       526 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  576 (681)
                      +.|++++|...+++.++.. +.+...+..+..+|+..|++++|...++...
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3455555555555555543 2234444444444444444444444444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.56  E-value=0.0089  Score=47.91  Aligned_cols=63  Identities=17%  Similarity=0.046  Sum_probs=49.3

Q ss_pred             hhHHHHHHHHHcCCChHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          581 ITWTAIIEAYGYNDLCQEALSLFDKMRNG-----GFTPN-----HFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       581 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .+|+.+..+|...|++++|++.+++..+.     ...++     ...+..+..+|...|++++|++.|++..+
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888889999999999999988887642     11222     23567788999999999999999998754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.53  E-value=0.008  Score=52.92  Aligned_cols=80  Identities=10%  Similarity=-0.023  Sum_probs=60.8

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChh
Q 047571           80 QRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFE  159 (681)
Q Consensus        80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  159 (681)
                      +...++|++++|+..+++..+.. |-+...+..+...++..|++++|...++...+.. +.+...+..+...+...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccH
Confidence            45667899999999999998875 5688999999999999999999999999998875 334445554544444334444


Q ss_pred             HH
Q 047571          160 DA  161 (681)
Q Consensus       160 ~a  161 (681)
                      ++
T Consensus        82 ~a   83 (264)
T d1zbpa1          82 DF   83 (264)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.24  E-value=0.003  Score=49.97  Aligned_cols=105  Identities=11%  Similarity=0.018  Sum_probs=57.1

Q ss_pred             ccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHH
Q 047571          525 GQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECAKLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFD  604 (681)
Q Consensus       525 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  604 (681)
                      .+.+.+++|...++..++.. +.++.++..+..+|...+++..+.+                     ..+.+++|+..|+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e---------------------~~~~~~~Ai~~~~   65 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD---------------------AKQMIQEAITKFE   65 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH---------------------HHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH---------------------HHHHHHHHHHHHH
Confidence            34455666666666666554 2234444444444443322211111                     1234567778888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhhhcCCCCCChhHHH
Q 047571          605 KMRNGGFTPNHFTFKVLLSICNQAGF-----------ADEACRIFNVMSRGYKIEALEEHYL  655 (681)
Q Consensus       605 ~m~~~g~~p~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~  655 (681)
                      +.++.+ |.+..+|..+..+|...|+           +++|.+.|+...+   +.|+...|.
T Consensus        66 kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~  123 (145)
T d1zu2a1          66 EALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYL  123 (145)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHH
T ss_pred             HHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHH
Confidence            777742 3366777777777766543           4667777776554   356544443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.02  E-value=0.17  Score=36.95  Aligned_cols=141  Identities=5%  Similarity=-0.009  Sum_probs=90.5

Q ss_pred             HHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 047571          489 CIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDFASVPFVAAENIKMYGMCGFLECA  568 (681)
Q Consensus       489 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  568 (681)
                      +.-.|.+++..+++.+...   ..+..-|+.++.-....-+-+-..+.++.+-+. +.            ...++++...
T Consensus        12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FD------------ls~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FD------------LDKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SC------------GGGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhh-cC------------chhhhcHHHH
Confidence            4456777777777777665   234445555555555555555555555544332 11            1223333333


Q ss_pred             HHHhhhCCCCChhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCC
Q 047571          569 KLVFDAVPVKGSITWTAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIE  648 (681)
Q Consensus       569 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  648 (681)
                      ...+-.+. .+....+..+.....+|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.+..+. |++
T Consensus        76 v~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K  152 (161)
T d1wy6a1          76 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GEK  152 (161)
T ss_dssp             HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence            33333222 223355667788889999999999999987765 889999999999999999999999999988775 553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.014  Score=41.78  Aligned_cols=72  Identities=8%  Similarity=-0.114  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC-hhHHH
Q 047571          583 WTAIIEAYGYNDLCQEALSLFDKMRNGG-----FTPN-HFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL-EEHYL  655 (681)
Q Consensus       583 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~  655 (681)
                      +-.+...+.+.|++++|+..|++..+..     ..++ ..++..|..++.+.|++++|++.++   +.+.+.|+ ...++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~---~aL~l~P~~~~a~~   84 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTK---KLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHH---HHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHH---HHHHhCcCCHHHHH
Confidence            3356777888888888888888876531     1122 4678888888888888888888888   44677776 44444


Q ss_pred             HH
Q 047571          656 IM  657 (681)
Q Consensus       656 ~l  657 (681)
                      .+
T Consensus        85 Nl   86 (95)
T d1tjca_          85 NL   86 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.031  Score=39.88  Aligned_cols=76  Identities=9%  Similarity=0.015  Sum_probs=54.7

Q ss_pred             chhHHHHHHHHHhcCChhHHHHHHHHHhhCC-----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHH
Q 047571           72 PRAIYKDIQRFARQNKLKEALVILDYMDQQG-----IPV-NVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLR  145 (681)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  145 (681)
                      ...+-.+...+.+.|++++|+..|++..+..     ..+ ...+++.+..++.+.|++++|...++++.+.. +.++.++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHH
Confidence            3445677888889999999999888875431     112 24568888888889999999999999988876 4444444


Q ss_pred             HHH
Q 047571          146 TKL  148 (681)
Q Consensus       146 ~~l  148 (681)
                      +.+
T Consensus        84 ~Nl   86 (95)
T d1tjca_          84 GNL   86 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=1.4  Score=41.66  Aligned_cols=263  Identities=8%  Similarity=-0.064  Sum_probs=130.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhH
Q 047571          352 SLVDMYCKCRDMNSAWRVFYETEERNEILWTALMSGYVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNH  431 (681)
Q Consensus       352 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  431 (681)
                      .-+..+.+.++++.....+.... .+...-.....+....|+.+.|...+..+-..|..                 ..+.
T Consensus        77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~  138 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNA  138 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTH
T ss_pred             HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchH
Confidence            34455566677666554443211 23444456667777888888887777666554421                 1222


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhcCChhHHHHHHHHhHhCCCC
Q 047571          432 GKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYSLKLFDEMEVRNVISWTAMIDSCIENGRLDDALGVFRSMQLSKHR  511 (681)
Q Consensus       432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  511 (681)
                      ...++..+.+.| ..+...+-.-+......|+...|..+...+...........+.....   ...+......     ..
T Consensus       139 c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~-----~~  209 (450)
T d1qsaa1         139 CDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-----TG  209 (450)
T ss_dssp             HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH-----SC
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc-----CC
Confidence            333444444444 33444444445555566788888888776654443444444443322   2222222111     12


Q ss_pred             CCHHHHHHHHHHhccc--cchHHHHHHHHHHHHcCCCCChhHHHHH----HHHHHhcCCHHHHHHHhhhCCC--CChhhH
Q 047571          512 PDSVAMARMLSVSGQL--KALKLGKEIHGQVLKKDFASVPFVAAEN----IKMYGMCGFLECAKLVFDAVPV--KGSITW  583 (681)
Q Consensus       512 p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~--~~~~~~  583 (681)
                      ++......+..+..+.  .+.+.+...+......... +..-...+    .......+..+.+...+.....  .+....
T Consensus       210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  288 (450)
T d1qsaa1         210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI  288 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred             CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence            3333333333333332  4556666666665543322 22212111    1222233445555555443322  222222


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047571          584 TAIIEAYGYNDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSR  643 (681)
Q Consensus       584 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  643 (681)
                      .-.+......+++..+...++.|.... .-...-.--+..++...|+.+.|..+|..+..
T Consensus       289 ~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         289 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            223333445677777777777664321 11233345566777777887777777776653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.33  E-value=0.3  Score=37.10  Aligned_cols=48  Identities=13%  Similarity=0.035  Sum_probs=29.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhh
Q 047571          593 NDLCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQ----AGFADEACRIFNVMSR  643 (681)
Q Consensus       593 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  643 (681)
                      ..+.++|+++|++..+.|   ++.....|...|..    ..+.++|.++|+...+
T Consensus        72 ~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          72 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            346677777777777765   23334444444443    3567777777777655

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=2.3  Score=40.12  Aligned_cols=415  Identities=8%  Similarity=-0.056  Sum_probs=205.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHhCCCC-chhHHHHHHHHhh
Q 047571           77 KDIQRFARQNKLKEALVILDYMDQQGIPVNVTTFNALITACVR--TRSLVEGRLIHTHIRINGLEN-NGFLRTKLVKMYT  153 (681)
Q Consensus        77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~  153 (681)
                      ..+....++|+...+..+...+...   | ...|...-..-..  .....++..+++   +..-.| ........+..+.
T Consensus        11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~---~~p~~P~~~~lr~~~l~~L~   83 (450)
T d1qsaa1          11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVR---ANPTLPPARTLQSRFVNELA   83 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHH
Confidence            4456677788888888777777432   2 2233322222222  233333333332   222122 2223344466777


Q ss_pred             cCCChhHHHHhhhhcCCCCCccHHHHHHHHHHcCCcChhhHHHHHHHHHHcCCCCChhhHHHHHHHhhccCchhhhHHHH
Q 047571          154 SCGSFEDAEKVFDESSSESVYPWNALLRGAVIAGKKRYRGVLFNYMKMRELGVQLNVYTFSCVIKSFAGASALMQGLKTH  233 (681)
Q Consensus       154 ~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  233 (681)
                      +.++++..+..+...+ .+...-.....+....|  +...+...+...=..|..                 ..+....++
T Consensus        84 ~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g--~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~  143 (450)
T d1qsaa1          84 RREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTG--QSEEAWQGAKELWLTGKS-----------------QPNACDKLF  143 (450)
T ss_dssp             HTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHSCSSC-----------------CCTHHHHHH
T ss_pred             hccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCC-----------------CchHHHHHH
Confidence            8888887776654321 12222334555666666  666666665544333311                 122233344


Q ss_pred             HHHHHhCCCCCcHHHhHHHHHHHhcCChHHHHHHHhccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 047571          234 ALLIKNGFVDYLILRTSLIDMYFKCGKIKLARRVFDETGDRDIVVWGSMIAGFAHNRLRWEALDCARWMIREGIYPNSVV  313 (681)
Q Consensus       234 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  313 (681)
                      ..+.+.|. .+...+-.-+......|+...|..+...+...........+...........   ..   ..  ..++...
T Consensus       144 ~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~---~~---~~--~~~~~~~  214 (450)
T d1qsaa1         144 SVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT---FA---RT--TGATDFT  214 (450)
T ss_dssp             HHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH---HH---HH--SCCCHHH
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH---HH---hc--CCCChhh
Confidence            44444442 3333333445556667777777777776655444444444444332222211   11   11  1122222


Q ss_pred             HHHHHHHHhhh--hhhcccchhhhhhhhccCCCCCch--HHhHHHHHHHhcCCHHHHHHHHhhcCC--CChhhHHHHHHH
Q 047571          314 LTILLPVIGEA--WARKLGQEVHAYVLKNERYSEELF--VRSSLVDMYCKCRDMNSAWRVFYETEE--RNEILWTALMSG  387 (681)
Q Consensus       314 ~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~  387 (681)
                      ...+..++.+.  .+.+.+...+..........++..  ....+...+...+..+.+..++.....  .+.....-.+..
T Consensus       215 ~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~  294 (450)
T d1qsaa1         215 RQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM  294 (450)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHH
Confidence            22223333322  344455555555444322222211  111122222334555666555544332  233333334555


Q ss_pred             HHhCCChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047571          388 YVSNGRLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQFLPNVSIITSLMIMYSKCGVLDYS  467 (681)
Q Consensus       388 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  467 (681)
                      ....+++..+...+..|... ..-...-...+..++...|+.+.|..+|..+..   .++  -|.-|...  +.|..-. 
T Consensus       295 al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~-  365 (450)
T d1qsaa1         295 ALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQ--RIGEEYE-  365 (450)
T ss_dssp             HHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHH--HTTCCCC-
T ss_pred             HHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHH--HcCCCCC-
Confidence            56677888888888777543 222333445566778888888888888887653   233  23332211  1221100 


Q ss_pred             HHHH-hhCCCCCcch-----HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHH
Q 047571          468 LKLF-DEMEVRNVIS-----WTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVL  541 (681)
Q Consensus       468 ~~~~-~~~~~~~~~~-----~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  541 (681)
                        +- .....+....     -..-+..+...|....|...|..+...   .+......+.....+.|.++.++.......
T Consensus       366 --~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         366 --LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             --CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             --CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence              00 0000011111     112345677889999999999888753   345566677777888899998887766553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.04  E-value=0.72  Score=33.55  Aligned_cols=64  Identities=9%  Similarity=0.056  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCHHHHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 047571          481 SWTAMIDSCIENGRLDDALGVFRSMQLSKHRPDSVAMARMLSVSGQLKALKLGKEIHGQVLKKDF  545 (681)
Q Consensus       481 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  545 (681)
                      .++..+..+..+|+-++-.++++++.+.+ +|+......+..+|.+.|...++.+++.+.-+.|+
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            34455667777888888888888866643 77777777778888888888888888777776664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.16  E-value=1  Score=33.85  Aligned_cols=46  Identities=7%  Similarity=-0.070  Sum_probs=22.4

Q ss_pred             ChHHHHHHHHHHHHcCcCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhC
Q 047571          393 RLEQALRSIAWMQQEGFRPDVVTVATVIPVCSQLKALNHGKEIHAYAVKNQ  443 (681)
Q Consensus       393 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  443 (681)
                      ++++|+..|++..+.|..   ..+..+.  .....+.++|..+++...+.|
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g   53 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN   53 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence            455666666666555421   1121221  223345566666666655554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.36  E-value=1.3  Score=30.53  Aligned_cols=63  Identities=17%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCChhHHHHHHH
Q 047571          595 LCQEALSLFDKMRNGGFTPNHFTFKVLLSICNQAGFADEACRIFNVMSRGYKIEALEEHYLIMID  659 (681)
Q Consensus       595 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  659 (681)
                      +.=++.+-++.+....+-|++......+.+|.+.+++.-|.++++.++.+  ..++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence            45567777888888888999999999999999999999999999988865  3334556666544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=1.3  Score=32.54  Aligned_cols=69  Identities=9%  Similarity=-0.055  Sum_probs=49.1

Q ss_pred             CChhhHHHHHHHHHcCC---ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCC
Q 047571          578 KGSITWTAIIEAYGYND---LCQEALSLFDKMRNGGFTPNH-FTFKVLLSICNQAGFADEACRIFNVMSRGYKIEAL  650 (681)
Q Consensus       578 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  650 (681)
                      +...+--...+++++..   +.++++.++++..+.+ +.+. ..+..|.-+|.+.|++++|.++++.+.+.   .|+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i---eP~  105 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERN  105 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc---CCC
Confidence            44445556677777654   5678888998888753 3343 56677888889999999999999888764   554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.93  E-value=2.5  Score=29.06  Aligned_cols=63  Identities=10%  Similarity=0.071  Sum_probs=48.7

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047571           87 KLKEALVILDYMDQQGIPVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVK  150 (681)
Q Consensus        87 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  150 (681)
                      +.-+..+-++.+...+.-|++....+.+++|.+.+++..|.++++-.+... .++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            455677777778778888999999999999999999999999998887553 334556666554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.98  E-value=1.3  Score=32.47  Aligned_cols=44  Identities=5%  Similarity=-0.147  Sum_probs=20.8

Q ss_pred             HHHHHHHhhhCCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047571          565 LECAKLVFDAVPV--KG--SITWTAIIEAYGYNDLCQEALSLFDKMRN  608 (681)
Q Consensus       565 ~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  608 (681)
                      .+++..+|+++..  |.  ...+-.|.-+|.+.|++++|.+.++.+.+
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3445555554443  11  12333344445555555555555555555