Citrus Sinensis ID: 047575

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MSVNNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL
Secondary Structure (PSIPRED)
cccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccEEEEEEEcccccccccEEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccccccccccHcHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHHcccEEEEEccccccccccccEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEccHccc
Coil and Loop (DISEMBL)
MSVNNQDWMLKVICGLHNHHvaqhleghsfagrltnEEVSTLVDlsknnvrpkeifhtlktrdTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCtykvnkykfplLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTimqddmlpsVIVIKRELTL
Flexible Loop (DISEMBL)
MSVNNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVdlsknnvrpkeifhtlktrdtfsvTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLktimqddmlpsvivikreltl
Low Complexity Region (SEG)
MSVNNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL
Disordered region (IsUnstruct)
******DWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIK*****
Disordered Region (DISOPRED)
***NNQDWMLKVICGLHNHHVAQHLE*HS****LTNEEV*TLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL
Disordered Region (DISEMBL)
MSVNNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL
Disordered Region (DISPRO)
****NQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVNNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
356499731	878	PREDICTED: uncharacterized protein LOC10	0.971	0.194	0.405	8e-36
356554576	388	PREDICTED: protein FAR1-RELATED SEQUENCE	0.982	0.445	0.390	1e-35
356536595	877	PREDICTED: uncharacterized protein LOC10	0.971	0.194	0.400	2e-35
356529783	1403	PREDICTED: uncharacterized protein LOC10	0.965	0.121	0.407	8e-35
297744547	701	unnamed protein product [Vitis vinifera]	0.795	0.199	0.441	2e-34
356536993	426	PREDICTED: protein FAR1-RELATED SEQUENCE	0.982	0.406	0.380	4e-33
356522881	592	PREDICTED: uncharacterized protein LOC10	0.982	0.292	0.375	8e-33
147776975	773	hypothetical protein VITISV_001036 [Viti	0.857	0.195	0.396	2e-32
144923508	470	transposase, putative [Medicago truncatu	0.977	0.365	0.336	6e-29
124359247	612	Ovarian tumour, otubain, related [Medica	0.965	0.277	0.354	2e-27

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 31/202 (15%)

Query: 6   QDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTF 65
           + W++KV+CG HNH + + L GH +AGRL+ EE S +  L+K+ ++PK+I  TLK  +  
Sbjct: 127 EGWIVKVMCGCHNHDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMG 186

Query: 66  SVTMMKAICNARYKYKVCE------------------------------LDIFWAYPLTF 95
           +VT +K I NAR  Y+  +                               DIFW +P   
Sbjct: 187 NVTTIKQIYNARQAYRSSKKGSEMQHLLKLLEHDRYVYWHRKVDDSDAIRDIFWTHPDAI 246

Query: 96  ELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRL 155
           +LL AF  VLI+D TYK  +Y+ PLLEIVGVT T +TF+V FA++ES+R DN+ WAL++L
Sbjct: 247 KLLGAFNTVLIIDSTYKTTRYQLPLLEIVGVTSTELTFSVAFAFVESERADNFTWALQKL 306

Query: 156 KT-IMQDDMLPSVIVIKRELTL 176
           +  I+++D +P VIV   ++ L
Sbjct: 307 RGLIVKEDDMPQVIVTVGDIAL 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554576|ref|XP_003545621.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 121/205 (59%), Gaps = 32/205 (15%)

Query: 4   NNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRD 63
             + W +K+ICG+HNH +A+ L GH +AGRLT++E + + +++K+NV+P+ I  TLK  +
Sbjct: 101 GGEGWAVKLICGIHNHELAKTLVGHPYAGRLTDDEKNIIANMTKSNVKPRNILLTLKEHN 160

Query: 64  TFSVTMMKAICNARYKYKVC------EL-------------------------DIFWAYP 92
           + S T +K I NAR  Y+        E+                         D+FW +P
Sbjct: 161 SSSCTTIKQIYNARSAYRSSIRGDDTEMQHPMRLLERDQYIHWHRLKDEDVVRDLFWCHP 220

Query: 93  LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWAL 152
              +L  A   V ++D TYK N+Y+ PLL+IVGVT T MTF+  FAYLE +R +N +WAL
Sbjct: 221 DAVKLCNACHLVFLIDSTYKTNRYRLPLLDIVGVTPTGMTFSAGFAYLEGERVNNLVWAL 280

Query: 153 KRLKTI-MQDDMLPSVIVIKRELTL 176
           +R + + +++D LP VIV  R+L L
Sbjct: 281 ERFRGLFLRNDRLPVVIVTDRDLAL 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 119/202 (58%), Gaps = 31/202 (15%)

Query: 6   QDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTF 65
           + W++KV+CG HNH + + L GH +AGRL+ EE S +  L+K+ ++PK+I  TLK  +  
Sbjct: 124 EGWIVKVMCGCHNHDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMG 183

Query: 66  SVTMMKAICNARYKYKVCE------------------------------LDIFWAYPLTF 95
           +VT +K I NAR  Y+  +                               DIFW +P   
Sbjct: 184 NVTTIKQIYNARQAYRSSKKGSEMQHLLKLLEHDRYVYWHRKVDDSDAIRDIFWTHPDAI 243

Query: 96  ELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRL 155
           +LL AF  VL++D TYK  +Y+ PLLEIVGVT T +TF+  FA++ES+R +N+ WALK+L
Sbjct: 244 KLLGAFNTVLVIDSTYKTTRYQLPLLEIVGVTSTELTFSAAFAFVESERAENFTWALKKL 303

Query: 156 KT-IMQDDMLPSVIVIKRELTL 176
           +  I +DD +P VIV   ++ L
Sbjct: 304 RGLIAKDDDMPQVIVTVGDIAL 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 122/206 (59%), Gaps = 36/206 (17%)

Query: 5    NQDWMLKVICGLHNHHVAQHLE-GHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRD 63
            ++ W++KV+CG HNH + + L  GHS+AGRLT EE S ++D++K  V P+ I  TLK  D
Sbjct: 890  DEGWIVKVMCGYHNHDLGETLVVGHSYAGRLTAEEKSLVIDMTKKMVEPRNILLTLK--D 947

Query: 64   TFSVTMMKAICNARYKYKVCE--------------------------------LDIFWAY 91
              + T ++ I NAR  Y+  +                                 DIFWA+
Sbjct: 948  HNNDTTIRHIYNARQAYRSSQKGPRTEMQHLLKLLEHDQYVCWSRKVDDSDAIRDIFWAH 1007

Query: 92   PLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWA 151
            P   +LL +F  VL +D TYKVN+Y+ PLLEIVGVT T +TF+V FAY+ES   DN+ WA
Sbjct: 1008 PDAIKLLGSFHTVLFLDNTYKVNRYQLPLLEIVGVTSTELTFSVAFAYMESDEVDNFTWA 1067

Query: 152  LKRLKT-IMQDDMLPSVIVIKRELTL 176
            L++L+  I++D+ +P VI+  R++ L
Sbjct: 1068 LQKLRELIVKDNEMPPVIITVRDIAL 1093

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 107/172 (62%), Gaps = 32/172 (18%)

Query: 37  EEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKV-------------- 82
           EE+  L+DLSK+ ++PKEI +TLK RD  + T +K I NAR+K+K+              
Sbjct: 2   EEIGILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKLNENAGGSLMQQLMN 61

Query: 83  ------------------CELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIV 124
                             C  D+ +A+P + ELL+AF  VLIMDCTY+ NKY+ PLLE+V
Sbjct: 62  KLMEFKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVLIMDCTYRTNKYQLPLLEVV 121

Query: 125 GVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL 176
           GVT T  TF+V FAYL S+RE+ + WAL+RL++++ D MLP V++  RE +L
Sbjct: 122 GVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMIDDAMLPRVVMTDREPSL 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536993|ref|XP_003537016.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 32/205 (15%)

Query: 4   NNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRD 63
             + WM+K+ICG+HNH +A+ L GH +AGRLT +E + + D++K+NV+P+ I  TLK  +
Sbjct: 113 GGEGWMVKLICGIHNHELAKTLVGHPYAGRLTEDEKNIIADMTKSNVKPRNILLTLKKYN 172

Query: 64  TFSVTMMKAICNARYKYKVC-------------------------------ELDIFWAYP 92
           + S T +K I NAR  Y+                                   D+FW +P
Sbjct: 173 SNSCTTIKQIYNARSAYRSSIRGDDTKMKHLMRLLERDQYIHWHRLKDQDVVRDLFWCHP 232

Query: 93  LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWAL 152
              +L  A   V ++D TYK N+YKFP L+ VGVT T M F+  FAYLE +  +N +WAL
Sbjct: 233 DAVKLCNACHLVFLIDSTYKTNRYKFPFLDFVGVTPTGMNFSAGFAYLEGECMNNLVWAL 292

Query: 153 KRLKTI-MQDDMLPSVIVIKRELTL 176
           +R + + +++D L  VIV  R+L L
Sbjct: 293 ERFRGLFLRNDHLHVVIVTDRDLAL 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522881|ref|XP_003530071.1| PREDICTED: uncharacterized protein LOC100787990 [Glycine max]

 Score =  145 bits (365), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 119/205 (58%), Gaps = 32/205 (15%)

Query: 4   NNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRD 63
             + W +K+ICG+HNH +A+ L G+ +AGRLT+++ + +VD++K+NV+P+ I  TLK  +
Sbjct: 56  GGEGWAVKLICGIHNHELAKTLVGNPYAGRLTDDDKNIIVDMTKSNVKPRNILLTLKEHN 115

Query: 64  TFSVTMMKAICNARYKYKVC------EL-------------------------DIFWAYP 92
           + S T +K I NAR  Y+        E+                         D+FW +P
Sbjct: 116 SSSCTTIKQIYNARSAYRSSIRGDDSEMQHLMRLLERDQYIHWHRLKDEDVVRDLFWCHP 175

Query: 93  LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWAL 152
              +L  A   + ++D TYK N+Y   LL+IVGVT   MTF+  FAYLE +R +N +WAL
Sbjct: 176 DAVKLCNACHLIFLIDSTYKTNRYMLSLLDIVGVTPIGMTFSAGFAYLEGERVNNLVWAL 235

Query: 153 KRLKTI-MQDDMLPSVIVIKRELTL 176
           +R + + +++D LP VIV  R+L L
Sbjct: 236 ERFRGLFLRNDRLPLVIVTDRDLAL 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 108/202 (53%), Gaps = 51/202 (25%)

Query: 7   DWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFS 66
           +W L V CG HNH   QH+EGHSFAGRL+ EE+  L+DLSK+ ++PKEI +TLK RD  +
Sbjct: 102 EWTLVVKCGTHNHPGGQHVEGHSFAGRLSMEEIGILIDLSKSQMKPKEILNTLKERDGLN 161

Query: 67  VTMMKAICNARYKYKV--------------------------------CELDIFWAYPLT 94
            T +K I NAR+K+K                                 C  D+ +A+P +
Sbjct: 162 CTTIKGIYNARHKHKANENAGGSLMQQLMNKLMEFKYIEWHRNDEHNNCVRDLMFAHPSS 221

Query: 95  FELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKR 154
            ELL+AF  V                   VGVT T  TF+V FAYL S+RE+   WAL+R
Sbjct: 222 LELLRAFPRV-------------------VGVTSTEKTFSVAFAYLGSEREEAXTWALER 262

Query: 155 LKTIMQDDMLPSVIVIKRELTL 176
           L++ +   MLP V++  RE +L
Sbjct: 263 LRSXIDXAMLPRVVMTDREPSL 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|144923508|gb|ABE80136.2| transposase, putative [Medicago truncatula]

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 113/205 (55%), Gaps = 33/205 (16%)

Query: 5   NQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDT 64
           N  W L ++ G+HNH + +++ GH  +GRL  ++   + DL+ ++V+PK I   LK +  
Sbjct: 124 NNFWKLVILNGVHNHEMVRYVAGHLLSGRLMEDDKKIVHDLTDSSVKPKSILTNLKKKRK 183

Query: 65  FSVTMMKAICNARYKYKVCELD--------------------------------IFWAYP 92
            S+T +K + N R+K+K  + D                                IFW +P
Sbjct: 184 ESITNIKQVYNERHKFKKAKRDDLTEMQYLISKLEENVYVHYVREKKESQNVQDIFWTHP 243

Query: 93  LTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWAL 152
            + +L   F  VLIMD TYK N Y+ PL EIVGVT T +T++V FA++ S++EDN+ WAL
Sbjct: 244 TSVKLFNNFPTVLIMDSTYKTNLYRMPLFEIVGVTSTYLTYSVGFAFMTSEKEDNFTWAL 303

Query: 153 KRLKTIMQDDM-LPSVIVIKRELTL 176
           + L  +++ +  +P V+V  R+ ++
Sbjct: 304 QMLLKLLEPNSDMPKVVVTDRDPSM 328

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359247|gb|ABN05752.1| Ovarian tumour, otubain, related [Medicago truncatula]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 33/203 (16%)

Query: 7   DWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFS 66
           DW LKV  G HNH +   L+GH   GRL   E   L ++  +NV P+++   LK R+  +
Sbjct: 127 DWSLKVGDGKHNHDMTDVLKGHKTVGRLNPNERVHLEEMVDSNVPPRQMLTNLKKRNRTT 186

Query: 67  VTMMKAICNARYKYKV------------------------CE--------LDIFWAYPLT 94
            T +K + NA Y+Y+                         C          D+FWA+  +
Sbjct: 187 STTIKHVYNASYRYRRSIRGTRNDMQHLLKSLVDNGYVYHCRKYPDSKVISDVFWAHLDS 246

Query: 95  FELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKR 154
            +L   F+ VL+++ TYK NKY+ PLLE VG T T  TF++DFAY+ S+R+DN  WALKR
Sbjct: 247 IKLFNTFSTVLVLNSTYKTNKYRLPLLEFVGNTSTMKTFSIDFAYMMSERQDNVYWALKR 306

Query: 155 LKTIMQ-DDMLPSVIVIKRELTL 176
            + ++   D+ P V    R+  L
Sbjct: 307 CREMLHTKDLYPKVFATNRDNAL 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Pc21g00130 Pc21g00130 (605 aa) (Penicillium chrysogenum)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam10551	88	pfam10551, MULE, MULE transposase domain	4e-06

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 109 CTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVI 168
            TY  NKYK      VGV      F + FA +  + E+++ W L+ LK  +      ++I
Sbjct: 1   GTYLTNKYK----GAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRPPLTII 56

This domain was identified by Babu and colleagues. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.69
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	97.94
PF08069	60	Ribosomal_S13_N: Ribosomal S13/S15 N-terminal doma	95.31
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	94.29
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	93.74
COG3328	379	Transposase and inactivated derivatives [DNA repli	93.43
PTZ00072	148	40S ribosomal protein S13; Provisional	90.7
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	90.02
PF13610	140	DDE_Tnp_IS240: DDE domain	88.33
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	85.5
PF11427	50	HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C	81.02

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=2.1e-39  Score=285.88  Aligned_cols=172  Identities=16%  Similarity=0.271  Sum_probs=130.0

Q ss_pred             cCCceEEEEecCCCCCCCCCCCCccccCCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCC--CccchHHHHHHHHhhcc
Q 047575            4 NNQDWMLKVICGLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDT--FSVTMMKAICNARYKYK   81 (176)
Q Consensus         4 ~~~~W~i~~~~~~HNH~~~~~~~~h~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~--~~~~t~kdi~N~~~k~r   81 (176)
                      .+|+|+|..+..+|||++.++.......|++-......+......+..+.+....+.+...  -.....+.+.++.++++
T Consensus       171 ~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~r~~~~~~gD~~~ll~yf~~~q  250 (846)
T PLN03097        171 PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQ  250 (846)
T ss_pred             CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHhhhhccccccccchhhcchhhHHHhhhcccchHHHHHHHHHHHH
Confidence            5789999999999999999865433333443332222222111111111111111111000  01124566777777665


Q ss_pred             c---------------cccceEEeChHhHHHHHhCCcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccc
Q 047575           82 V---------------CELDIFWAYPLTFELLKAFTNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKRED  146 (176)
Q Consensus        82 ~---------------~i~~if~~~~~~~~~~~~f~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~  146 (176)
                      .               +|++|||+|++|+..|..|||||.||+||+||+|+|||+.|+|+|+|+++++||||||.+|+.|
T Consensus       251 ~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~e  330 (846)
T PLN03097        251 NMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAA  330 (846)
T ss_pred             hhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchh
Confidence            5               7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCeEEEecCCCCC
Q 047575          147 NYIWALKRLKTIMQDDMLPSVIVIKRELTL  176 (176)
Q Consensus       147 s~~w~l~~~~~~~~~~~~p~~iitD~d~al  176 (176)
                      ||.|+|++|+++|+ ++.|++||||+|.||
T Consensus       331 Sf~WLf~tfl~aM~-gk~P~tIiTDqd~am  359 (846)
T PLN03097        331 TYSWLMQTWLRAMG-GQAPKVIITDQDKAM  359 (846)
T ss_pred             hHHHHHHHHHHHhC-CCCCceEEecCCHHH
Confidence            99999999999998 799999999999986

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.69  E-value=4e-17  Score=109.46  Aligned_cols=65  Identities=42%  Similarity=0.632  Sum_probs=61.1

Q ss_pred             ccccccccCcceeE---EEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCCC
Q 047575          109 CTYKVNKYKFPLLE---IVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL  176 (176)
Q Consensus       109 ~ty~tn~~~~pl~~---~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~al  176 (176)
                      +||+||+| +|++.   ++|+|++++++++||+++.+|++++|.|+|+.+++.++. . |++||+|+|.|+
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-~-p~~ii~D~~~~~   68 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-K-PKVIISDFDKAL   68 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-C-ceeeeccccHHH
Confidence            69999999 88886   999999999999999999999999999999999999984 5 999999999875

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=97.94  E-value=3.6e-06  Score=70.15  Aligned_cols=140  Identities=14%  Similarity=0.038  Sum_probs=101.0

Q ss_pred             ccCCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhccccccceEEeChHhHHHHHhC-CcEEEE
Q 047575           29 SFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAF-TNVLIM  107 (176)
Q Consensus        29 ~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~~i~~if~~~~~~~~~~~~f-~dvv~~  107 (176)
                      +.+++-+++.-+.|..|.-.|+++++|-..|+...++..+....|.+...++...+..  |   +.+ ..... -.+|.+
T Consensus        94 ~~y~r~~~~l~~~i~~ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~~~--w---~~R-~L~~~~y~~l~i  167 (381)
T PF00872_consen   94 PKYQRREDSLEELIISLYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEVEA--W---RNR-PLESEPYPYLWI  167 (381)
T ss_pred             chhhhhhhhhhhhhhhhhccccccccccchhhhhhcccccCchhhhhhhhhhhhhHHH--H---hhh-ccccccccceee
Confidence            3344446666678888999999999999999888774445556666665554431111  0   111 12223 257899


Q ss_pred             eccccccc-----cCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCCC
Q 047575          108 DCTYKVNK-----YKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELTL  176 (176)
Q Consensus       108 D~ty~tn~-----~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~al  176 (176)
                      |++|-.-+     -+.+++.++|++..|+-.++|+.....|+.++|.=+|..+++-  +-..|..||+|...+|
T Consensus       168 D~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~R--Gl~~~~lvv~Dg~~gl  239 (381)
T PF00872_consen  168 DGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKER--GLKDILLVVSDGHKGL  239 (381)
T ss_pred             eeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhc--cccccceeeccccccc
Confidence            99997544     2467899999999999999999999999999999888887543  2456999999998765

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.31  E-value=0.03  Score=34.12  Aligned_cols=33  Identities=24%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             CCCCHHH-HHhhhhhccCCCChhHHHHHhhhcCC
Q 047575           32 GRLTNEE-VSTLVDLSKNNVRPKEIFHTLKTRDT   64 (176)
Q Consensus        32 r~ls~~~-~~~i~~l~~~g~~~~~I~~~l~~~~~   64 (176)
                      =++++++ .+.|.+|.+.|+.|++|-.+|+++++
T Consensus        26 ~~~~~~eVe~~I~klakkG~tpSqIG~iLRD~~G   59 (60)
T PF08069_consen   26 LKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYG   59 (60)
T ss_dssp             --S-HHHHHHHHHHHCCTTHCHHHHHHHHHHSCT
T ss_pred             cCCCHHHHHHHHHHHHHcCCCHHHhhhhhhhccC
Confidence            3567666 48899999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=94.29  E-value=0.27  Score=33.36  Aligned_cols=72  Identities=15%  Similarity=-0.008  Sum_probs=43.3

Q ss_pred             CcEEEEeccccc-cccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCC
Q 047575          102 TNVLIMDCTYKV-NKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELT  175 (176)
Q Consensus       102 ~dvv~~D~ty~t-n~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~a  175 (176)
                      ++.+.+|.+... ...+...+.++.+|...+- ..++.+-..++.+.+.-+|.......+ +..|++|++|++.+
T Consensus         6 ~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~~i~tD~g~~   78 (120)
T PF00665_consen    6 GERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRG-GRPPRVIRTDNGSE   78 (120)
T ss_dssp             TTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS--SE-SEEEEESCHH
T ss_pred             CCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeecccccccccccccccccccc-cccceecccccccc
Confidence            467888888543 2334467777888877664 445555555455555555554444443 23399999999754

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=93.74  E-value=0.1  Score=37.68  Aligned_cols=81  Identities=21%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             CCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCCC---------c-----------cchHHHHHHHHhhccc---c----
Q 047575           32 GRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDTF---------S-----------VTMMKAICNARYKYKV---C----   83 (176)
Q Consensus        32 r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~~---------~-----------~~t~kdi~N~~~k~r~---~----   83 (176)
                      -++++++. +.|.+|.+.|.+|++|-..|++++|-         .           +--..|+||+-.++.+   +    
T Consensus        26 ~~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~gip~Vk~vtG~ki~~iLk~~gl~p~iPEDL~~L~~ri~~L~~HL~~n  105 (151)
T PRK08561         26 VDYSPEEIEELVVELAKQGYSPSMIGIILRDQYGIPDVKLITGKKITEILEENGLAPEIPEDLRNLIKKAVNLRKHLEEN  105 (151)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccCCCceeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHhC
Confidence            46777664 88899999999999999999999851         0           1126688888665433   1    


Q ss_pred             ------ccceEEeChHhHHHHHhC--CcEEEEecccc
Q 047575           84 ------ELDIFWAYPLTFELLKAF--TNVLIMDCTYK  112 (176)
Q Consensus        84 ------i~~if~~~~~~~~~~~~f--~dvv~~D~ty~  112 (176)
                            -.++.-.-++.+.+..+|  -+++--|..|.
T Consensus       106 kKD~~skRgL~~~~skrrRLl~Yyk~~~~LP~~WkY~  142 (151)
T PRK08561        106 PKDLHNKRGLQLIESKIRRLVKYYKRTGVLPADWRYS  142 (151)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCC
Confidence                  112222334455566666  45666666554

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=93.43  E-value=0.26  Score=41.21  Aligned_cols=125  Identities=12%  Similarity=-0.011  Sum_probs=76.5

Q ss_pred             HhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhccccccceEEeChHhHHHHHhCCcEEEEeccccccc--cC
Q 047575           40 STLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKVCELDIFWAYPLTFELLKAFTNVLIMDCTYKVNK--YK  117 (176)
Q Consensus        40 ~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~~i~~if~~~~~~~~~~~~f~dvv~~D~ty~tn~--~~  117 (176)
                      ..|..|-..|+.+++|-..++..... ....-.+.....++...+..     .+++.+ ..| .+|.+|++|..-+  -+
T Consensus        91 ~~v~~~y~~gv~Tr~i~~~~~~~~~~-~~s~~~iS~~~~~~~e~v~~-----~~~r~l-~~~-~~v~~D~~~~k~r~v~~  162 (379)
T COG3328          91 LPVLSMYAKGVTTREIEALLEELYGH-KVSPSVISVVTDRLDEKVKA-----WQNRPL-GDY-PYVYLDAKYVKVRSVRN  162 (379)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhhCc-ccCHHHhhhHHHHHHHHHHH-----HHhccc-cCc-eEEEEecceeehhhhhh
Confidence            56777889999999999999887543 22222223332222221111     012222 222 4788999998877  56


Q ss_pred             cceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCC
Q 047575          118 FPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELT  175 (176)
Q Consensus       118 ~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~a  175 (176)
                      ..++..+|++..|+-..+|+-.-..|. ..|.-++.-|+. -+ -..-..+++|.-++
T Consensus       163 ~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~-rg-l~~v~l~v~Dg~~g  217 (379)
T COG3328         163 KAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKN-RG-LSDVLLVVVDGLKG  217 (379)
T ss_pred             heeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHh-cc-ccceeEEecchhhh
Confidence            788999999999999999998888888 555522322222 11 22334555576543

>PTZ00072 40S ribosomal protein S13; Provisional

Probab=90.70  E-value=0.66  Score=33.35  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=27.6

Q ss_pred             CCCCHHH-HHhhhhhccCCCChhHHHHHhhhcC
Q 047575           32 GRLTNEE-VSTLVDLSKNNVRPKEIFHTLKTRD   63 (176)
Q Consensus        32 r~ls~~~-~~~i~~l~~~g~~~~~I~~~l~~~~   63 (176)
                      -+.++++ .+.|.+|.+.|+.|+||-..|++++
T Consensus        23 ~~~~~eeVe~~I~klaKkG~~pSqIG~iLRD~~   55 (148)
T PTZ00072         23 LKLSSSEVEDQICKLAKKGLTPSQIGVILRDSM   55 (148)
T ss_pred             hcCCHHHHHHHHHHHHHCCCCHhHhhhhhhhcc
Confidence            3567666 4889999999999999999999998

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=90.02  E-value=0.2  Score=28.45  Aligned_cols=31  Identities=26%  Similarity=0.257  Sum_probs=15.9

Q ss_pred             CCCCCHHHHHhhhhhccCCCChhHHHHHhhh
Q 047575           31 AGRLTNEEVSTLVDLSKNNVRPKEIFHTLKT   61 (176)
Q Consensus        31 ~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~   61 (176)
                      .++||++++..|..|.+.|.+.++|...|..
T Consensus         2 ~~~Lt~~eR~~I~~l~~~G~s~~~IA~~lg~   32 (44)
T PF13936_consen    2 YKHLTPEERNQIEALLEQGMSIREIAKRLGR   32 (44)
T ss_dssp             ----------HHHHHHCS---HHHHHHHTT-
T ss_pred             ccchhhhHHHHHHHHHHcCCCHHHHHHHHCc
Confidence            3589999999999999999999999998854

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=88.33  E-value=0.21  Score=35.68  Aligned_cols=69  Identities=19%  Similarity=0.031  Sum_probs=51.1

Q ss_pred             CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCCC
Q 047575          102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKRELT  175 (176)
Q Consensus       102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~a  175 (176)
                      |+.+.+|=||-.=+ |---+.+-.+|..|+  .+.+-+-..-+...=..+|+..++...  ..|.+|+||+-.|
T Consensus         1 ~~~w~~DEt~iki~-G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~--~~p~~ivtDk~~a   69 (140)
T PF13610_consen    1 GDSWHVDETYIKIK-GKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR--GEPRVIVTDKLPA   69 (140)
T ss_pred             CCEEEEeeEEEEEC-CEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec--cccceeecccCCc
Confidence            57889999996544 334566888999988  566666666677777777766666653  5899999999765

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=85.50  E-value=1.1  Score=25.46  Aligned_cols=40  Identities=13%  Similarity=0.190  Sum_probs=28.6

Q ss_pred             CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHh
Q 047575           32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARY   78 (176)
Q Consensus        32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~   78 (176)
                      +++++++.+.+..|.+.|.+..+|...+.       +....||.+..
T Consensus         4 ~~~~~~~~~~i~~l~~~G~si~~IA~~~g-------vsr~TvyR~l~   43 (45)
T PF02796_consen    4 PKLSKEQIEEIKELYAEGMSIAEIAKQFG-------VSRSTVYRYLN   43 (45)
T ss_dssp             SSSSHCCHHHHHHHHHTT--HHHHHHHTT-------S-HHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHC-------cCHHHHHHHHh
Confidence            56888888999999999999999887753       34566666653

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C

Probab=81.02  E-value=1.7  Score=25.48  Aligned_cols=31  Identities=16%  Similarity=0.189  Sum_probs=21.8

Q ss_pred             CCCCHHHHHhhhhhccCCCChhHHHHHhhhc
Q 047575           32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTR   62 (176)
Q Consensus        32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~   62 (176)
                      ..||++|+.+|..|.+.|++..+|-..+.+.
T Consensus         3 ~~Lt~~Eqaqid~m~qlG~s~~~isr~i~RS   33 (50)
T PF11427_consen    3 KTLTDAEQAQIDVMHQLGMSLREISRRIGRS   33 (50)
T ss_dssp             ----HHHHHHHHHHHHTT--HHHHHHHHT--
T ss_pred             CcCCHHHHHHHHHHHHhchhHHHHHHHhCcc
Confidence            3589999999999999999999999988653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	94.96
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	92.28
3j20_Q	158	30S ribosomal protein S15P/S13E; archaea, archaeal	90.73
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	86.94
1tc3_C	51	Protein (TC3 transposase); DNA binding, helix-turn	80.84
1je8_A	82	Nitrate/nitrite response regulator protein NARL; p	80.28

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O

Probab=94.96  E-value=0.07  Score=37.51  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             CCCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCC
Q 047575           31 AGRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDT   64 (176)
Q Consensus        31 ~r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~   64 (176)
                      .-++++++. +.|.+|.+.|+.|+||-.+|++++|
T Consensus        25 W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G   59 (151)
T 3u5c_N           25 WFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHG   59 (151)
T ss_dssp             SCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCC
Confidence            346787664 8899999999999999999999985

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=92.28  E-value=0.28  Score=34.47  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             cCCCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCC
Q 047575           30 FAGRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDT   64 (176)
Q Consensus        30 ~~r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~   64 (176)
                      ..-++++++. +.|.+|.+.|+.|+||-.+|++++|
T Consensus        26 ~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G   61 (153)
T 2xzm_O           26 KWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHG   61 (153)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSC
T ss_pred             ccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCC
Confidence            3346787664 8899999999999999999999986

>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=90.73  E-value=0.35  Score=34.25  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=29.7

Q ss_pred             cCCCCCHHHH-HhhhhhccCCCChhHHHHHhhhcCC
Q 047575           30 FAGRLTNEEV-STLVDLSKNNVRPKEIFHTLKTRDT   64 (176)
Q Consensus        30 ~~r~ls~~~~-~~i~~l~~~g~~~~~I~~~l~~~~~   64 (176)
                      ..-++++++. +.|.+|.+.|+.|+||-.+|++++|
T Consensus        24 ~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~g   59 (158)
T 3j20_Q           24 IWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYG   59 (158)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred             CCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCC
Confidence            3346787775 8899999999999999999999886

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=86.94  E-value=3.6  Score=27.60  Aligned_cols=62  Identities=10%  Similarity=-0.048  Sum_probs=38.7

Q ss_pred             CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575          102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL  174 (176)
Q Consensus       102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~  174 (176)
                      .++..+|.|+..++     +.++.+|...+-. ++. .+.+++.+...-++..+...+  +  |++|.+|+..
T Consensus         2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~-~~~~~~~~~~~~~l~~~~~~~--g--p~~i~sDnG~   63 (152)
T 3kks_A            2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQ-VIPEETALQVALCILQLIQRY--T--VLHLHSDNGP   63 (152)
T ss_dssp             CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEE-EESSSCHHHHHHHHHHHHHHS--C--CSEEEECSCH
T ss_pred             CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEE-EeCCcCHHHHHHHHHHHHHHh--C--CcEEecCCch
Confidence            36788999987443     4466667666644 444 345666665555554433332  3  9999999863

>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2

Probab=80.84  E-value=4  Score=21.54  Aligned_cols=42  Identities=17%  Similarity=0.055  Sum_probs=31.1

Q ss_pred             CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhc
Q 047575           32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKY   80 (176)
Q Consensus        32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~   80 (176)
                      ++++++++..|..+...|.+.++|...+.       +....|+++..+.
T Consensus         4 ~~l~~~~~~~i~~~~~~g~s~~~IA~~lg-------is~~Tv~~~~~~~   45 (51)
T 1tc3_C            4 SALSDTERAQLDVMKLLNVSLHEMSRKIS-------RSRHCIRVYLKDP   45 (51)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHC-------cCHHHHHHHHhhH
Confidence            46899998888888889999999988764       2345566665544

>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A

Probab=80.28  E-value=2  Score=26.49  Aligned_cols=64  Identities=22%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCccccCCCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHHhhccc
Q 047575           15 GLHNHHVAQHLEGHSFAGRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNARYKYKV   82 (176)
Q Consensus        15 ~~HNH~~~~~~~~h~~~r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~~k~r~   82 (176)
                      ..++|++..+........+|++.+++.+.. ...|.+.++|-+.|.-..   ......+.+.+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~l-~~~g~s~~eIA~~l~is~---~tV~~~l~r~~~kL~~   66 (82)
T 1je8_A            3 GSHHHHHHGSATTERDVNQLTPRERDILKL-IAQGLPNKMIARRLDITE---STVKVHVKHMLKKMKL   66 (82)
T ss_dssp             --------------CCGGGSCHHHHHHHHH-HTTTCCHHHHHHHHTSCH---HHHHHHHHHHHHHTTC
T ss_pred             CccCCCCCCchHHHHHHccCCHHHHHHHHH-HHcCCCHHHHHHHHCcCH---HHHHHHHHHHHHHHcC
Confidence            356666655444444557899999876666 478999999999985321   1123344455555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1ijwc_	47	HIN recombinase (DNA-binding domain) {Synthetic}	92.49
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	88.33
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	87.74

>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=92.49  E-value=0.055  Score=29.18  Aligned_cols=39  Identities=5%  Similarity=0.040  Sum_probs=31.3

Q ss_pred             CCCCHHHHHhhhhhccCCCChhHHHHHhhhcCCCccchHHHHHHHH
Q 047575           32 GRLTNEEVSTLVDLSKNNVRPKEIFHTLKTRDTFSVTMMKAICNAR   77 (176)
Q Consensus        32 r~ls~~~~~~i~~l~~~g~~~~~I~~~l~~~~~~~~~t~kdi~N~~   77 (176)
                      ++||++|.+.++.|.++|.+..+|...+.       .....||++.
T Consensus         4 ~~lt~~q~~~a~~l~~~G~s~~~iA~~~g-------VSr~TiYry~   42 (47)
T d1ijwc_           4 RAINKHEQEQISRLLEKGHPRQQLAIIFG-------IGVSTLYRYF   42 (47)
T ss_dssp             CSSCHHHHHHHHHHHHTTCCHHHHHHHHT-------CCHHHHHHHS
T ss_pred             CcCCHHHHHHHHHHHHCCCCHHHHHHHHC-------cCHHHHHhhC
Confidence            68999999999999999999999988763       2345566653

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=88.33  E-value=1.6  Score=28.20  Aligned_cols=66  Identities=11%  Similarity=-0.061  Sum_probs=41.6

Q ss_pred             cEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575          103 NVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL  174 (176)
Q Consensus       103 dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~  174 (176)
                      +++.+|.||-....+... ..+.+|...+ +..+ ..+.+++.+.....+..+...++   .|+.|.||...
T Consensus         8 ~~w~~D~~~~~~~~~~~~-l~v~vD~~Sr-~i~~-~~~~~~t~~~~~~~l~~~~~~~g---~p~~i~sDnG~   73 (147)
T d1cxqa_           8 QIWQTDFTLEPRMAPRSW-LAVTVDTASS-AIVV-TQHGRVTSVAAQHHWATAIAVLG---RPKAIKTDNGS   73 (147)
T ss_dssp             CEEEEEEEECGGGTTSCE-EEEEEETTTC-CEEE-EEESSCCHHHHHHHHHHHHHHHC---CCSEEECCSCH
T ss_pred             CEEEEEEEEecCCCCeEE-EEEEEecccc-eecc-cccCccchHHHHHHHHHHHHHhC---CCeEEEecccc
Confidence            678899888765555543 3455666554 3333 35667776665555555444443   59999999864

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=87.74  E-value=0.87  Score=29.93  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=40.8

Q ss_pred             CcEEEEeccccccccCcceeEEEeeccCCCeEEEEEEeecCCccchHHHHHHHHHHHhcCCCCCeEEEecCCC
Q 047575          102 TNVLIMDCTYKVNKYKFPLLEIVGVTLTTMTFNVDFAYLESKREDNYIWALKRLKTIMQDDMLPSVIVIKREL  174 (176)
Q Consensus       102 ~dvv~~D~ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~~s~~w~l~~~~~~~~~~~~p~~iitD~d~  174 (176)
                      |.+..+|.|+-.|+|     .++.+|...+ +..++ .+.+++.+...-++..+...    ..|++|.||+..
T Consensus         3 pg~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~-~~~~~~~~~v~~~l~~~~~~----~~p~~I~sDnG~   64 (154)
T d1exqa_           3 PGIWQLDCTHLEGKV-----ILVAVHVASG-YIEAE-VIPAETGQETAYFLLKLAGR----WPVKTIHTDNGS   64 (154)
T ss_dssp             GGEEEEEEEEETTEE-----EEEEEETTTT-EEEEE-EESSSSHHHHHHHHHHHHHH----SCCCEEECCCCG
T ss_pred             CCceeeEEEEECCEE-----EEEEEECcCC-cEEEE-EecCcchHHHHhhhhhheec----cCCCEEEEcCCc
Confidence            347789999977764     4567777755 44454 45667776666555444322    248999999875