Citrus Sinensis ID: 047577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSKPASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAAAGKKKT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHcccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
medwedeqipplaskvvaeskwddedvdesdvkeswedddeptpappvkppekaekapskpaskapekkgktteERKEEVLDPLAEKLRQQRLVEeadykstkelfgkggdeknldnfipksesDFMEYAELIShklrpyeksyhYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAAAGKKKT
Flexible Loop (DISEMBL)
medwedeqipplaskvvaeskwddedVDESdvkeswedddeptpappvkppekaekapskpaskapekkgktteerkeevldplaeklrqqrlveeadykstkelfgkggdeknldNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANeklkaekeaaagkkkt
Low Complexity Region (SEG)
MEDWEDEQIPPLASKVVAeskwddedvdesdvkeswedddeptpappvkppekaekapskpaskapekkgktteerkeeVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITaianeklkaekeaaagkkkT
Disordered region (IsUnstruct)
****************************************************************************************************************************DFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLK********************************
Disordered Region (DISOPRED)
MEDWEDEQIP**************EDVDESDVKESW******************************************************************KELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAI******************
Disordered Region (DISEMBL)
********IPPLASKVVAE************************************************************VLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKL*************
Disordered Region (DISPRO)
**********PLA*****************************************************************EVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKE********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSKPASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAAAGKKKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	194	2.2.26 [Sep-21-2011]
Q6INR1	255	Eukaryotic translation in	N/A	no	0.829	0.631	0.342	1e-17
B4J4E7	237	Eukaryotic translation in	N/A	no	0.922	0.755	0.342	8e-15
B4NX24	236	Eukaryotic translation in	N/A	no	0.922	0.758	0.343	3e-14
Q8I1G8	236	Eukaryotic translation in	N/A	no	0.922	0.758	0.343	3e-14
Q5I0B5	256	Eukaryotic translation in	yes	no	0.845	0.640	0.331	5e-14
B4LN42	236	Eukaryotic translation in	N/A	no	0.907	0.745	0.346	1e-13
A7RSH7	247	Eukaryotic translation in	N/A	no	0.896	0.704	0.341	2e-13
Q54KI0	219	Eukaryotic translation in	yes	no	0.577	0.511	0.333	2e-13
Q7K550	236	Eukaryotic translation in	yes	no	0.922	0.758	0.338	2e-13
Q7SXU0	249	Eukaryotic translation in	yes	no	0.530	0.413	0.394	3e-13

>sp|Q6INR1|EIF3J_XENLA Eukaryotic translation initiation factor 3 subunit J OS=Xenopus laevis GN=eif3j PE=2 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 17/178 (9%)

Query: 16  VVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSKP--ASKAPEKKG--- 70
           V+ + +W+ ED +E DVK++W+D++E   A   +P +   K P K     K  EK+    
Sbjct: 27  VIVKDRWEGED-EEEDVKDNWDDEEEAQDATKQEPQKTELKVPEKKKLQEKIKEKENLQK 85

Query: 71  KTTEERKEEVLDP-----------LAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFI 119
           K  EE K++ L+            LAEKLRQQ+L E++D +  KE FG       +D   
Sbjct: 86  KRKEELKKQALESSNLPEITPEEQLAEKLRQQKLQEDSDLELAKEAFGVNVPVTGIDAMN 145

Query: 120 PKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIA 177
           P +  DF E+ +L+  K+  YE+S +Y G L+A++R    SL+  D K + SS+T + 
Sbjct: 146 PSTREDFTEFGKLLKEKITQYERSLYYPGFLEALVRDVCLSLEVEDLKKINSSLTVLC 203

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Xenopus laevis (taxid: 8355)

>sp|B4J4E7|EIF3J_DROGR Eukaryotic translation initiation factor 3 subunit J OS=Drosophila grimshawi GN=Adam PE=3 SV=1

 Score = 80.1 bits (196), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 31/210 (14%)

Query: 2   EDWE---DEQI---PPLASKVVAESKWDDEDVDESDVKESWEDDDEP--------TPAPP 47
           +DWE   D ++   P  A+ +   +KW+ ED DE DVKESWED++E         T AP 
Sbjct: 3   DDWEFAADSKVVVKPNAANNI---NKWEGEDDDE-DVKESWEDEEEKKDEEKPTKTEAPA 58

Query: 48  VKPPEKAEKA------PSKPASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKS 101
              P K  KA        +   +A      +TEE+       LAEKLR Q++ EE+D KS
Sbjct: 59  KTKPNKVLKAKLLEQECLEKEEEAKRLANMSTEEK-------LAEKLRLQKIQEESDLKS 111

Query: 102 TKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSL 161
             E FG    +  LD+F P+S  +F E+   +S K+  Y++S H+   ++ +++    +L
Sbjct: 112 ALETFGLTSIDGGLDSFNPQSNEEFKEFGATLSWKIAQYKESPHFPQFIEDLVQALCVNL 171

Query: 162 KAADAKDVASSITAIANEKLKAEKEAAAGK 191
             AD K V  S+  + +EKLK EK +   K
Sbjct: 172 STADLKKVKMSVEVLHSEKLKMEKVSVKNK 201

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila grimshawi (taxid: 7222)

>sp|B4NX24|EIF3J_DROYA Eukaryotic translation initiation factor 3 subunit J OS=Drosophila yakuba GN=Adam PE=3 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 19/198 (9%)

Query: 2   EDWE---DEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDE------PTPA-PPVKP- 50
           +DWE   D ++    +   + +KW+ ED DE D+K+SWED++E      PT    P KP 
Sbjct: 3   DDWESAADSEVVIRPTGAASVNKWEGEDEDE-DIKDSWEDEEEKKDEEKPTKTEAPAKPK 61

Query: 51  PEKAEKAPSKPASKAPEKKGKTTEERKEEVLDP---LAEKLRQQRLVEEADYKSTKELFG 107
           P KA KA  +  ++  E+     E ++   L P   LAEKLR Q++ E +D K  +E FG
Sbjct: 62  PNKALKAKLEQQARLEEE----AEAQRVANLSPAEKLAEKLRLQKIQEASDLKHAQEAFG 117

Query: 108 KGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAK 167
                  LD F P+S+ +F E+   +S K+  + +S H+   ++ ++R    +L AAD K
Sbjct: 118 VTSTCGGLDAFNPESKEEFKEFGATLSWKVSQFRESEHFPQFVEDLVRSLCVNLSAADIK 177

Query: 168 DVASSITAIANEKLKAEK 185
            V  ++  + +EKLK EK
Sbjct: 178 KVKMNVEILHSEKLKLEK 195

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila yakuba (taxid: 7245)

>sp|Q8I1G8|EIF3J_DROER Eukaryotic translation initiation factor 3 subunit J OS=Drosophila erecta GN=Adam PE=3 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 19/198 (9%)

Query: 2   EDWE---DEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDE------PTPA-PPVKP- 50
           +DWE   D ++    +   + +KW+ ED DE D+K+SWED++E      PT    P KP 
Sbjct: 3   DDWESAADSEVVIRPTAAASVNKWEGEDEDE-DIKDSWEDEEEKKDEEKPTKTEAPAKPK 61

Query: 51  PEKAEKAPSKPASKAPEKKGKTTEERKEEVLDP---LAEKLRQQRLVEEADYKSTKELFG 107
           P KA KA  +  ++  E+     E ++   L P   LAEKLR Q++ E +D K  +E FG
Sbjct: 62  PNKALKAKLEQQARLEEE----AEAQRVASLSPAEKLAEKLRLQKIQEASDLKHAQEAFG 117

Query: 108 KGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAK 167
                  LD F P+S+ +F E+   +S K+  + +S H+   ++ ++R    +L AAD K
Sbjct: 118 VTSTCGGLDAFNPESKEEFKEFGATLSWKVAQFRESEHFPQFVEDLVRSLCVNLSAADIK 177

Query: 168 DVASSITAIANEKLKAEK 185
            V  ++  + +EKLK EK
Sbjct: 178 KVKMNVEILHSEKLKLEK 195

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila erecta (taxid: 7220)

>sp|Q5I0B5|EIF3J_XENTR Eukaryotic translation initiation factor 3 subunit J OS=Xenopus tropicalis GN=eif3j PE=2 SV=2

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 23/187 (12%)

Query: 10  PPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPS---KPASKAP 66
           PP A +     +W+ ED +E DVK++W+D++E   A   +  +  E   S   K   K  
Sbjct: 26  PPPAGR----DRWEGED-EEEDVKDNWDDEEEAEAATKQEAQKTVEPKVSEKKKLLEKIR 80

Query: 67  EKKGKTTEERKEEV-----------LDP---LAEKLRQQRLVEEADYKSTKELFGKGGDE 112
           EK+ K  ++R+EEV           L P   LAEKLR ++L E++D +  KE FG     
Sbjct: 81  EKE-KLHKKRQEEVNQQEKEGTAPELSPEEQLAEKLRLKKLQEDSDLELAKEAFGDNVTV 139

Query: 113 KNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASS 172
             +D   P S  DF E+ +L+  K+  YE+S  Y G L+ ++R    SL+  D K + +S
Sbjct: 140 TGIDAMNPSSREDFTEFGKLLKEKITQYERSLFYPGFLEVLVREVCVSLEVDDLKKINNS 199

Query: 173 ITAIANE 179
           +T +  E
Sbjct: 200 LTVLCFE 206

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|B4LN42|EIF3J_DROVI Eukaryotic translation initiation factor 3 subunit J OS=Drosophila virilis GN=Adam PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 100/199 (50%), Gaps = 23/199 (11%)

Query: 2   EDWE---DEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEP--------TPAPPVKP 50
           +DWE   D +I    +     +KW+ ED DE DVKESWED++E         T AP    
Sbjct: 3   DDWESAADSEIVIRPNATNNINKWEGEDDDE-DVKESWEDEEEKKDEEKPTKTEAPVKTK 61

Query: 51  PEKAEKA-----PSKPASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKEL 105
           P KA KA           +  ++    T E K      LAEKLR Q++ EE+D KS  + 
Sbjct: 62  PNKALKAKLEEQERLNEEEERKRLANMTAEEK------LAEKLRLQKIQEESDLKSALDT 115

Query: 106 FGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAAD 165
           FG       LD F P+S+ +F E+   +S K+  Y +S H+   ++ ++R    +L AAD
Sbjct: 116 FGVTSIGGGLDAFNPQSKEEFKEFGATLSWKVAQYRESVHFPEFIEDLVRSLCVNLSAAD 175

Query: 166 AKDVASSITAIANEKLKAE 184
            K V  S+ ++ +EK K E
Sbjct: 176 IKKVKMSVESLHSEKQKME 194

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila virilis (taxid: 7244)

>sp|A7RSH7|EIF3J_NEMVE Eukaryotic translation initiation factor 3 subunit J OS=Nematostella vectensis GN=v1g240395 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 31/205 (15%)

Query: 1   MEDWEDEQIPPLASKVVAES---KWDDEDVDESDVKESWEDD-----------DEPTPAP 46
           M DW+DE+  P   +V A+    KW+ ED D+ D+KESW+DD           +    AP
Sbjct: 1   MADWDDEKFEP--GEVPADGVTDKWEGEDEDD-DIKESWDDDDEDEKKEDEAKNTEAAAP 57

Query: 47  PVKPPEK-----AEKAPSKPASKAPEKKGKTTEERKEEVLDP---LAEKLRQQRLVEEAD 98
             K   K      E+       +  E+K K  EE KE  L P   +AEKLR+Q++VEE+D
Sbjct: 58  KKKKTLKQILKEKEEQKLLEEKRKAEEKQKLEEEDKE--LTPEEQMAEKLRRQKIVEESD 115

Query: 99  YKSTKELFGKGGDEK----NLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVM 154
                + FG G  E+     LD+ IP ++ +F EY++L+  KL  +E +  YI  L+A +
Sbjct: 116 LLVAMDTFGVGTQEEASRTGLDSMIPSTKEEFTEYSKLLVEKLTKFETNPEYIPFLEATL 175

Query: 155 RLSMTSLKAADAKDVASSITAIANE 179
           R    SL   D K ++S++  + +E
Sbjct: 176 REICVSLDPEDIKKLSSTLNMLQSE 200

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Nematostella vectensis (taxid: 45351)

>sp|Q54KI0|EIF3J_DICDI Eukaryotic translation initiation factor 3 subunit J OS=Dictyostelium discoideum GN=eif3J PE=3 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 5/117 (4%)

Query: 81  LDPLAEKLRQQRLVEEADYKSTKELF-GKGGDEKN----LDNFIPKSESDFMEYAELISH 135
            D   E+ R++ L E +D +++K LF G    E +    +  FIPK+E DF +Y++++S 
Sbjct: 75  FDIYLEEKRKKELQEASDLENSKNLFSGLSVKESSSGEPISTFIPKTEKDFEQYSQIVSD 134

Query: 136 KLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAAAGKK 192
            L  Y+ S HY    K++M+  + ++ ++D  D++ ++T + NEKLK EK    G K
Sbjct: 135 YLLKYDSSIHYATFFKSLMKKVLVNVSSSDMNDISKTLTVLINEKLKNEKSGKGGNK 191

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7K550|EIF3J_DROME Eukaryotic translation initiation factor 3 subunit J OS=Drosophila melanogaster GN=Adam PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 106/198 (53%), Gaps = 19/198 (9%)

Query: 2   EDWE---DEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDE------PTPA-PPVKP- 50
           +DWE   D ++    +   + +KW+ ED DE D+K+SWED++E      PT    P KP 
Sbjct: 3   DDWESAADSEVVIRPTAAASVNKWEGEDEDE-DIKDSWEDEEEKKDEEKPTKTEAPAKPK 61

Query: 51  PEKAEKAPSKPASKAPEKKGKTTEERKEEVLDP---LAEKLRQQRLVEEADYKSTKELFG 107
           P KA KA  +  +   E+     E ++   L P   LAEKLR Q++ E +D K  +E FG
Sbjct: 62  PNKALKAKLEQQALLEEE----AEAKRLANLSPAEKLAEKLRLQKIQEASDLKHAQEAFG 117

Query: 108 KGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAK 167
                  LD F P+++ +F E+   +S K+  + +S H+   ++ ++R    +L AAD K
Sbjct: 118 VTSTCGGLDAFNPETKEEFKEFGATLSWKVGQFRESEHFPQFVEDLVRSLCVNLSAADIK 177

Query: 168 DVASSITAIANEKLKAEK 185
            V  ++  + +EKLK EK
Sbjct: 178 KVKMNVEILHSEKLKLEK 195

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Drosophila melanogaster (taxid: 7227)

>sp|Q7SXU0|EI3JA_DANRE Eukaryotic translation initiation factor 3 subunit J-A OS=Danio rerio GN=eif3ja PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 82  DPLAEKLRQQRLVEEADYKSTKELFGK-GGDEKNLDNFIPKSESDFMEYAELISHKLRPY 140
           D LAEKLR ++L E++D +  KE FG    +   +D   P S+ DF E+  L+  K+ PY
Sbjct: 102 DELAEKLRVKQLQEDSDLELAKEAFGVVSNNVTGIDAVSPSSKDDFTEFERLLKEKISPY 161

Query: 141 EKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAE 184
           EKS HY G L+ + R    SL+  D K + +S+T + +EK + E
Sbjct: 162 EKSIHYSGFLETLFRDLCLSLEVEDLKKINNSLTVLLSEKQRQE 205

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
255557090	222	Eukaryotic translation initiation factor	0.963	0.842	0.778	1e-68
224079609	222	predicted protein [Populus trichocarpa]	0.953	0.833	0.764	1e-66
118482076	222	unknown [Populus trichocarpa]	0.953	0.833	0.764	1e-66
297841195	222	hypothetical protein ARALYDRAFT_475711 [	0.927	0.810	0.707	7e-64
225450960	222	PREDICTED: eukaryotic translation initia	0.953	0.833	0.737	5e-62
18408426	226	Translation initiation factor eIF3 subun	0.927	0.796	0.675	2e-61
30693092	225	Translation initiation factor eIF3 subun	0.948	0.817	0.678	3e-61
356560041	229	PREDICTED: eukaryotic translation initia	0.974	0.825	0.740	2e-59
297805300	225	hypothetical protein ARALYDRAFT_493723 [	0.948	0.817	0.657	3e-59
388496568	225	unknown [Lotus japonicus]	0.974	0.84	0.768	2e-58

>gi|255557090|ref|XP_002519577.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223541235|gb|EEF42788.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/190 (77%), Positives = 165/190 (86%), Gaps = 3/190 (1%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           MEDWEDEQIPPL  K   +SKWDDEDVD++DVKESWED+DEP P P  KPP   EKA  K
Sbjct: 1   MEDWEDEQIPPLILKEQPKSKWDDEDVDDNDVKESWEDEDEPAPEPVAKPP--PEKATKK 58

Query: 61  PASKAPEKKGKTTEERKE-EVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFI 119
           P +K+ EKKGKT   ++E + LDP+AEKLRQQRLVEEADY+ST ELFGK GDEK LDNFI
Sbjct: 59  PVTKSIEKKGKTVVAKEESQPLDPVAEKLRQQRLVEEADYRSTTELFGKRGDEKTLDNFI 118

Query: 120 PKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANE 179
           PKSESDF+EYAEL+SHKLRPYEKS+HYIGLLKAVMRLSMT++KAADAKDVASS+TAIANE
Sbjct: 119 PKSESDFLEYAELVSHKLRPYEKSFHYIGLLKAVMRLSMTAMKAADAKDVASSVTAIANE 178

Query: 180 KLKAEKEAAA 189
           KLKAEKEA A
Sbjct: 179 KLKAEKEANA 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079609|ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|222848861|gb|EEE86408.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/187 (76%), Positives = 165/187 (88%), Gaps = 2/187 (1%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           MEDWEDEQ+PPL +K   +SKWDDEDVDE DVKESWED+DEP PAP VKPP   E AP K
Sbjct: 1   MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPP--PEMAPKK 58

Query: 61  PASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIP 120
           PA K+ EKKG TT+  K++ LDPLAEKLRQQRLVEEAD++ST ELFGK  DEK+LD+FIP
Sbjct: 59  PAVKSTEKKGNTTDVVKDQPLDPLAEKLRQQRLVEEADFRSTAELFGKKDDEKSLDSFIP 118

Query: 121 KSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180
           KSESDF+EYAELIS+KLRP+EKSYHYI LLKAVMRLSMTS+KAADAK+V++S++AIANEK
Sbjct: 119 KSESDFLEYAELISNKLRPFEKSYHYIHLLKAVMRLSMTSMKAADAKEVSTSVSAIANEK 178

Query: 181 LKAEKEA 187
           +KAEKEA
Sbjct: 179 IKAEKEA 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482076|gb|ABK92969.1| unknown [Populus trichocarpa]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/187 (76%), Positives = 165/187 (88%), Gaps = 2/187 (1%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           MEDWEDEQ+PPL +K   +SKWDDEDVDE DVKESWED+DEP PAP VKPP   E AP K
Sbjct: 1   MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPP--PEMAPKK 58

Query: 61  PASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIP 120
           PA K+ EKKG TT+  K++ LDPLAEKLRQQRLVEEAD++ST ELFGK  DEK+LD+FIP
Sbjct: 59  PAVKSTEKKGNTTDVVKDQPLDPLAEKLRQQRLVEEADFRSTAELFGKKDDEKSLDSFIP 118

Query: 121 KSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180
           KSESDF+EYAELIS+KLRP+EKSYHYI LLKAVMRLSMTS+KAADAK+V++S++AIANEK
Sbjct: 119 KSESDFLEYAELISNKLRPFEKSYHYIHLLKAVMRLSMTSMKAADAKEVSTSVSAIANEK 178

Query: 181 LKAEKEA 187
           +KAEKEA
Sbjct: 179 IKAEKEA 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841195|ref|XP_002888479.1| hypothetical protein ARALYDRAFT_475711 [Arabidopsis lyrata subsp. lyrata] gi|297334320|gb|EFH64738.1| hypothetical protein ARALYDRAFT_475711 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/181 (70%), Positives = 146/181 (80%), Gaps = 1/181 (0%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           M+DWEDEQI PL +KV  +S WDDEDVD +++KESWEDDDE    PPV  P   EKAP K
Sbjct: 1   MDDWEDEQIAPLPAKVELKSNWDDEDVDVNEIKESWEDDDEEPAQPPVVKP-APEKAPKK 59

Query: 61  PASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIP 120
            A K  EKKGK  E  KEE LDP+ EKLRQQRLVEEADY+ST ELFG   +EKNLD FIP
Sbjct: 60  AAPKTVEKKGKAIEVPKEEPLDPIVEKLRQQRLVEEADYRSTAELFGVKDEEKNLDMFIP 119

Query: 121 KSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180
           KSESDF+EYAE+ISH+++PYEKSYHYI LLK +MRLS+T++KAAD KDVASSIT IANEK
Sbjct: 120 KSESDFLEYAEMISHRIKPYEKSYHYIALLKTIMRLSLTNMKAADVKDVASSITTIANEK 179

Query: 181 L 181
           L
Sbjct: 180 L 180

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450960|ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation factor 3 subunit J [Vitis vinifera] gi|296088327|emb|CBI36772.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (618), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 155/187 (82%), Gaps = 2/187 (1%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           MEDWEDE I PL  K   ++KWDDED+D+ +VKESWED+DEP PAP ++    AEK P K
Sbjct: 1   MEDWEDEPITPLGKKEEPKNKWDDEDLDDDNVKESWEDEDEPAPAPVIQ--PPAEKPPKK 58

Query: 61  PASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIP 120
           P  KA EKKGK  E   E  LDP+AEK+RQQRL+EEADYKST ELF K GDEK LD+FIP
Sbjct: 59  PVEKATEKKGKAVEAVTEVTLDPVAEKIRQQRLIEEADYKSTTELFAKRGDEKTLDSFIP 118

Query: 121 KSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEK 180
           KSESDF+EYAELISHKLR YEKS+HYIGLLKAVMRLSM SLKAADAK++ASS+TAIANEK
Sbjct: 119 KSESDFVEYAELISHKLRSYEKSFHYIGLLKAVMRLSMASLKAADAKEIASSVTAIANEK 178

Query: 181 LKAEKEA 187
           LKAEKEA
Sbjct: 179 LKAEKEA 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408426|ref|NP_564865.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana] gi|334183669|ref|NP_001185326.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana] gi|12322607|gb|AAG51301.1|AC026480_8 unknown protein [Arabidopsis thaliana] gi|17380828|gb|AAL36101.1| unknown protein [Arabidopsis thaliana] gi|20259027|gb|AAM14229.1| unknown protein [Arabidopsis thaliana] gi|332196337|gb|AEE34458.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana] gi|332196338|gb|AEE34459.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 148/185 (80%), Gaps = 5/185 (2%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           M+DWEDE+I PL +KV  +S WDDEDVDE+++K+SWEDDD+    PPV  P   EKAP K
Sbjct: 1   MDDWEDEKIAPLPAKVELKSNWDDEDVDENEIKDSWEDDDDEPAQPPVINP-APEKAPKK 59

Query: 61  PASKAPEKKGKTTE----ERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLD 116
            A K  EKKGK  E      KE+ LDP+AEKLRQQRLVEEADY++T ELFG   D+KNLD
Sbjct: 60  AAPKTVEKKGKAVEVPKEAPKEKPLDPIAEKLRQQRLVEEADYRATAELFGVKDDDKNLD 119

Query: 117 NFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAI 176
            FIPKSESDF+EYAE+ISH+++PYEKSYHYI LLK +MRLS+T++KAAD KDVASSIT I
Sbjct: 120 MFIPKSESDFLEYAEMISHRIKPYEKSYHYIALLKTIMRLSLTNMKAADVKDVASSITTI 179

Query: 177 ANEKL 181
           ANEKL
Sbjct: 180 ANEKL 184

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693092|ref|NP_850918.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana] gi|23306418|gb|AAN17436.1| Unknown protein [Arabidopsis thaliana] gi|24899745|gb|AAN65087.1| Unknown protein [Arabidopsis thaliana] gi|26451768|dbj|BAC42979.1| unknown protein [Arabidopsis thaliana] gi|332006809|gb|AED94192.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana]

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/190 (67%), Positives = 151/190 (79%), Gaps = 6/190 (3%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           M+DWE E   PL SKV  +S WDDEDVDE+D+K+SWE++D   P P VKP   +EKAP K
Sbjct: 1   MDDWEAEDFQPLPSKVELKSNWDDEDVDENDIKDSWEEEDVSAPPPIVKP--ASEKAPKK 58

Query: 61  PASKAPEKKGKTTE----ERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLD 116
           PA KA EKK KT E      +EE LDP+AEKLR QRLVEEADY+ST ELFG   +EK++D
Sbjct: 59  PAVKAVEKKVKTVEAPKGTSREEPLDPIAEKLRMQRLVEEADYQSTAELFGVKTEEKSVD 118

Query: 117 NFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAI 176
             IPKSESDF++YAELIS +L P+EKS+HYIGLLKAVMRLS+ ++KAAD KDVASSITAI
Sbjct: 119 MLIPKSESDFLDYAELISQRLVPFEKSFHYIGLLKAVMRLSVANMKAADVKDVASSITAI 178

Query: 177 ANEKLKAEKE 186
           ANEKLKAEKE
Sbjct: 179 ANEKLKAEKE 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560041|ref|XP_003548304.1| PREDICTED: eukaryotic translation initiation factor 3 subunit J-like [Glycine max]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 157/193 (81%), Gaps = 4/193 (2%)

Query: 1   MEDWEDEQIPP--LASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAP 58
           M+DWEDE I P  L  K   +S WDDEDVDE+DVKESWED+DEP PAP     +  EKAP
Sbjct: 1   MDDWEDEHIAPIDLTLKDPVKSNWDDEDVDENDVKESWEDEDEPAPAPAAPAVKTTEKAP 60

Query: 59  SKPASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELF--GKGGDEKNLD 116
            K + KA EKKGKT E  KEE LDP+AEKLRQQRL+EEADYK+TKELF  GK  DEKNLD
Sbjct: 61  KKSSDKATEKKGKTVEPIKEEPLDPVAEKLRQQRLIEEADYKATKELFSGGKEKDEKNLD 120

Query: 117 NFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAI 176
            FIPKSESDF+EYAELISHKLR +EKSYHYIGLLKAVMRLS  SLK ADAKD+ASS+TAI
Sbjct: 121 TFIPKSESDFLEYAELISHKLRAFEKSYHYIGLLKAVMRLSTISLKGADAKDIASSVTAI 180

Query: 177 ANEKLKAEKEAAA 189
           ANEK+KAEKEA A
Sbjct: 181 ANEKIKAEKEANA 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805300|ref|XP_002870534.1| hypothetical protein ARALYDRAFT_493723 [Arabidopsis lyrata subsp. lyrata] gi|297316370|gb|EFH46793.1| hypothetical protein ARALYDRAFT_493723 [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 149/190 (78%), Gaps = 6/190 (3%)

Query: 1   MEDWEDEQIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSK 60
           M+DWE E   PL +KV  +S WDDEDVDE+D+K+SWE++D   P P VKP   +E AP K
Sbjct: 1   MDDWEAEDFQPLPAKVELKSNWDDEDVDENDIKDSWEEEDVSAPPPVVKP--ASENAPKK 58

Query: 61  PASKAPEKKGKTTE----ERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLD 116
            A KA EKK KT E      +EE LDP+AEKLR QRLVEEADY++T ELFG   +EK++D
Sbjct: 59  AAVKAVEKKVKTVEAPKGSSREEPLDPIAEKLRMQRLVEEADYQATAELFGVKTEEKSVD 118

Query: 117 NFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAI 176
             IPKSESDF++YAELIS +L P+EKS+HYIGLLKAVMRLS+ ++KAAD KDVASSITAI
Sbjct: 119 MLIPKSESDFLDYAELISQRLVPFEKSFHYIGLLKAVMRLSVANMKAADVKDVASSITAI 178

Query: 177 ANEKLKAEKE 186
           ANEKLKAEKE
Sbjct: 179 ANEKLKAEKE 188

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496568|gb|AFK36350.1| unknown [Lotus japonicus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/190 (76%), Positives = 159/190 (83%), Gaps = 1/190 (0%)

Query: 1   MEDWEDEQIPPL-ASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPS 59
           M+DWE+EQ  PL   K    SKWDDEDVDE+DVK+SWED DEP PAP     + AEKAP 
Sbjct: 1   MDDWEEEQFTPLDVKKDQPISKWDDEDVDENDVKDSWEDFDEPAPAPVAPAVKDAEKAPQ 60

Query: 60  KPASKAPEKKGKTTEERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFI 119
           KP+ KA EKKGK  E  KEE LDPLAEKLRQQRLVEEADYKSTKELFG G DEKN+D FI
Sbjct: 61  KPSEKAAEKKGKKVEPVKEEPLDPLAEKLRQQRLVEEADYKSTKELFGGGPDEKNIDTFI 120

Query: 120 PKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANE 179
           PKSESDF+EYAELISH+LR +EKSYHY+GLLKAVMRLSMTSLK ADAKD+ASSITAIANE
Sbjct: 121 PKSESDFLEYAELISHRLRSFEKSYHYMGLLKAVMRLSMTSLKGADAKDIASSITAIANE 180

Query: 180 KLKAEKEAAA 189
           K+KAEKEA A
Sbjct: 181 KIKAEKEANA 190

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2013830	226	AT1G66070 "AT1G66070" [Arabido	0.484	0.415	0.776	4.1e-41
TAIR|locus:2832875	225	AT5G37475 "AT5G37475" [Arabido	0.484	0.417	0.744	1.7e-36
UNIPROTKB|Q5I0B5	256	eif3j "Eukaryotic translation	0.479	0.363	0.365	4.5e-14
UNIPROTKB|Q6INR1	255	eif3j "Eukaryotic translation	0.479	0.364	0.397	1e-13
ZFIN|ZDB-GENE-040426-1266	249	eif3ja "eukaryotic translation	0.479	0.373	0.404	1e-13
UNIPROTKB|F1NE65	223	EIF3J "Eukaryotic translation	0.474	0.412	0.387	1.2e-12
UNIPROTKB|Q5ZKA4	252	EIF3J "Eukaryotic translation	0.474	0.365	0.387	1.2e-12
UNIPROTKB|G8JKV2	255	EIF3J "Eukaryotic translation	0.479	0.364	0.376	1.5e-12
UNIPROTKB|Q0VCU8	256	EIF3J "Eukaryotic translation	0.479	0.363	0.376	1.5e-12
UNIPROTKB|E2QUU1	259	EIF3J "Uncharacterized protein	0.489	0.366	0.387	1.5e-12

TAIR|locus:2013830 AT1G66070 "AT1G66070" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.1e-41, Sum P(2) = 4.1e-41
 Identities = 73/94 (77%), Positives = 86/94 (91%)

Query:    81 LDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPY 140
             LDP+AEKLRQQRLVEEADY++T ELFG   D+KNLD FIPKSESDF+EYAE+ISH+++PY
Sbjct:    84 LDPIAEKLRQQRLVEEADYRATAELFGVKDDDKNLDMFIPKSESDFLEYAEMISHRIKPY 143

Query:   141 EKSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             EKSYHYI LLK +MRLS+T++KAAD KDVASSIT
Sbjct:   144 EKSYHYIALLKTIMRLSLTNMKAADVKDVASSIT 177

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2832875 AT5G37475 "AT5G37475" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 70/94 (74%), Positives = 83/94 (88%)

Query:    81 LDPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPY 140
             LDP+AEKLR QRLVEEADY+ST ELFG   +EK++D  IPKSESDF++YAELIS +L P+
Sbjct:    83 LDPIAEKLRMQRLVEEADYQSTAELFGVKTEEKSVDMLIPKSESDFLDYAELISQRLVPF 142

Query:   141 EKSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             EKS+HYIGLLKAVMRLS+ ++KAAD KDVASSIT
Sbjct:   143 EKSFHYIGLLKAVMRLSVANMKAADVKDVASSIT 176

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q5I0B5 eif3j "Eukaryotic translation initiation factor 3 subunit J" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 162 (62.1 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYE 141
             + LAEKLR ++L E++D +  KE FG       +D   P S  DF E+ +L+  K+  YE
Sbjct:   109 EQLAEKLRLKKLQEDSDLELAKEAFGDNVTVTGIDAMNPSSREDFTEFGKLLKEKITQYE 168

Query:   142 KSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             +S  Y G L+ ++R    SL+  D K + +S+T
Sbjct:   169 RSLFYPGFLEVLVREVCVSLEVDDLKKINNSLT 201

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|Q6INR1 eif3j "Eukaryotic translation initiation factor 3 subunit J" [Xenopus laevis (taxid:8355)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/93 (39%), Positives = 56/93 (60%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYE 141
             + LAEKLRQQ+L E++D +  KE FG       +D   P +  DF E+ +L+  K+  YE
Sbjct:   108 EQLAEKLRQQKLQEDSDLELAKEAFGVNVPVTGIDAMNPSTREDFTEFGKLLKEKITQYE 167

Query:   142 KSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             +S +Y G L+A++R    SL+  D K + SS+T
Sbjct:   168 RSLYYPGFLEALVRDVCLSLEVEDLKKINSSLT 200

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

ZFIN|ZDB-GENE-040426-1266 eif3ja "eukaryotic translation initiation factor 3, subunit Ja" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/94 (40%), Positives = 55/94 (58%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGK-GGDEKNLDNFIPKSESDFMEYAELISHKLRPY 140
             D LAEKLR ++L E++D +  KE FG    +   +D   P S+ DF E+  L+  K+ PY
Sbjct:   102 DELAEKLRVKQLQEDSDLELAKEAFGVVSNNVTGIDAVSPSSKDDFTEFERLLKEKISPY 161

Query:   141 EKSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             EKS HY G L+ + R    SL+  D K + +S+T
Sbjct:   162 EKSIHYSGFLETLFRDLCLSLEVEDLKKINNSLT 195

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1NE65 EIF3J "Eukaryotic translation initiation factor 3 subunit J" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/93 (38%), Positives = 56/93 (60%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYE 141
             + LA+KLR ++L EE+D +  KE FG   +   +D   P S+ DF E+ +L+  K+  YE
Sbjct:    78 EQLADKLRLKKLQEESDLELAKETFGVN-NACGIDAMNPSSKDDFTEFGKLLKEKITQYE 136

Query:   142 KSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             KS HY   L+A++R    SL+  D K + +S+T
Sbjct:   137 KSLHYASFLEALVRDVCISLEIDDLKKITNSLT 169

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q5ZKA4 EIF3J "Eukaryotic translation initiation factor 3 subunit J" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/93 (38%), Positives = 56/93 (60%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYE 141
             + LA+KLR ++L EE+D +  KE FG   +   +D   P S+ DF E+ +L+  K+  YE
Sbjct:   107 EQLADKLRLKKLQEESDLELAKETFGVN-NACGIDAMNPSSKDDFTEFGKLLKEKITQYE 165

Query:   142 KSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             KS HY   L+A++R    SL+  D K + +S+T
Sbjct:   166 KSLHYASFLEALVRDVCISLEIDDLKKITNSLT 198

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|G8JKV2 EIF3J "Eukaryotic translation initiation factor 3 subunit J" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/93 (37%), Positives = 54/93 (58%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYE 141
             + LA+KLR ++L EE+D +  KE FG       +D   P S  DF E+ +L+  K+  YE
Sbjct:   110 EQLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYE 169

Query:   142 KSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             KS +Y   L+A++R    SL+  D K + +S+T
Sbjct:   170 KSLYYANFLEALVRDVCISLEIDDLKKITNSLT 202

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

UNIPROTKB|Q0VCU8 EIF3J "Eukaryotic translation initiation factor 3 subunit J" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/93 (37%), Positives = 54/93 (58%)

Query:    82 DPLAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHKLRPYE 141
             + LA+KLR ++L EE+D +  KE FG       +D   P S  DF E+ +L+  K+  YE
Sbjct:   110 EQLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDKITQYE 169

Query:   142 KSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             KS +Y   L+A++R    SL+  D K + +S+T
Sbjct:   170 KSLYYANFLEALVRDVCISLEIDDLKKITNSLT 202

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|E2QUU1 EIF3J "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 38/98 (38%), Positives = 56/98 (57%)

Query:    80 VLDP---LAEKLRQQRLVEEADYKSTKELFGKGGDEKNLDNFIPKSESDFMEYAELISHK 136
             VL P   LA+KLR ++L EE+D +  KE FG       +D   P S  DF E+ +L+  K
Sbjct:   108 VLTPEELLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEFGKLLKDK 167

Query:   137 LRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
             +  YEKS +Y   L+A++R    SL+  D K + +S+T
Sbjct:   168 ITQYEKSLYYASFLEALVRDVCISLEIDDLKKITNSLT 205

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV3730	SubName- Full=Putative uncharacterized protein; (223 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_290097	hypothetical protein (465 aa)						•			0.854
	eugene3.00030772	hypothetical protein (464 aa)						•			0.853
	estExt_fgenesh4_pm.C_LG_VIII0284	hypothetical protein (343 aa)						•			0.845
	grail3.0022009302	hypothetical protein (343 aa)						•			0.845
	grail3.0038004701	hypothetical protein (452 aa)						•			0.822
	estExt_fgenesh4_pm.C_LG_XIII0470	SubName- Full=Putative uncharacterized protein; (271 aa)						•			0.822
	eugene3.01650024	hypothetical protein (444 aa)						•			0.821
	eugene3.03280006	hypothetical protein (455 aa)						•			0.821
	fgenesh4_pg.C_scaffold_1866000002	annotation not avaliable (150 aa)						•			0.811
	estExt_Genewise1_v1.C_LG_XIV3582	SubName- Full=Putative uncharacterized protein;; Seems to be required for maximal rate of prote [...] (145 aa)						•			0.810

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	1e-42

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score =  142 bits (360), Expect = 1e-42
 Identities = 81/210 (38%), Positives = 115/210 (54%), Gaps = 18/210 (8%)

Query: 1   MEDWEDE--QIPPLASKVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAP 58
           M DW+DE  + P   +K V + KWDDED ++ DVK+SW D++E       K    A+   
Sbjct: 1   MADWDDEEFEPPAPPAKAVVKDKWDDED-EDDDVKDSW-DEEEDEEKEEEKAKVAAKAKA 58

Query: 59  SKPASKAPEKKGKTTEERKEEV---------LDPLAEKLRQQRLVEEADYKSTKELFG-- 107
            K      E+K K   E++E+           D LAEKLR ++L EE+D  +  +LFG  
Sbjct: 59  KKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEESDLNNAADLFGGP 118

Query: 108 ---KGGDEKNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAA 164
              K  D ++LD F PK++ DF E  + ++ KL  YE S HY G L+ ++R     L + 
Sbjct: 119 APTKDTDLESLDLFNPKTKEDFEELRKALAKKLTKYESSPHYAGFLEDLIRDLAAPLSSE 178

Query: 165 DAKDVASSITAIANEKLKAEKEAAAGKKKT 194
           D K V+S++  + NEKLKAEK A  GKKK 
Sbjct: 179 DIKKVSSTLNVLINEKLKAEKAAKGGKKKK 208

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
PF08597	245	eIF3_subunit: Translation initiation factor eIF3 s	100.0
KOG4813	248	consensus Translation initiation factor eIF3, p35	100.0

>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3)

Probab=100.00  E-value=2.5e-50  Score=345.67  Aligned_cols=192  Identities=46%  Similarity=0.700  Sum_probs=71.2

Q ss_pred             CCCcccCCCCCCCc--hhhhcCCCCcccCCCcccccCCCCCC-CCCCCC---CCCCCCCCcCCCCCCCCccchhcccchh
Q 047577            1 MEDWEDEQIPPLAS--KVVAESKWDDEDVDESDVKESWEDDD-EPTPAP---PVKPPEKAEKAPSKPASKAPEKKGKTTE   74 (194)
Q Consensus         1 m~dWd~ed~~~~~~--~~~~~~kWe~Ed~dd~~vkdsWddee-e~k~~~---~~~~~~~~~~~~kk~~~K~~~~~~~~~~   74 (194)
                      |+|||+++|+|+++  ..++.++|+||++++ +|+|||++++ ++.+.+   +++++++....+++++++...++.+..+
T Consensus         1 M~~Wd~e~~~~~~~~~~~~~~~kwddE~ed~-~v~dsWe~ee~~e~~~e~~~~~~~~k~k~~~~~k~~ek~~~~~~~~~~   79 (245)
T PF08597_consen    1 MDDWDDEDFEPPAAPPKAAVKNKWDDEDEDD-DVKDSWEDEEDEEEEEEKAKEAAKAKKKKKLKQKIAEKEKKKREEEEE   79 (245)
T ss_dssp             --------------------------------SS--TT------------------------------------------
T ss_pred             CCCCcccccCCCccccccccccCCCCccccc-cccccccccccccccccccccccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            89999999998644  335799999997554 8999999654 221111   1111111112222222222211111111


Q ss_pred             -----hhhccCCCHHHHHHHHHHHHHHhhhHHHHHhhCCC-------CCCCCCccCCCCCHHHHHHHHHHHHHhhcCCCC
Q 047577           75 -----ERKEEVLDPLAEKLRQQRLVEEADYKSTKELFGKG-------GDEKNLDNFIPKSESDFMEYAELISHKLRPYEK  142 (194)
Q Consensus        75 -----~~~~~~~d~~~ek~r~~~~~eeaDL~~A~dLFG~~-------~~~~~l~~~~P~Tk~DF~~~~~~L~~kl~~~~k  142 (194)
                           ....++++|+++|+|+|++|++|||.+|++||||.       +...+|+.|+|+|+.||++|+.+|+.+|++|++
T Consensus        80 ~~~~~~~~~~~~d~~~ek~r~q~~~eeaDl~~A~dLFGg~~~~~~~~~~~~~l~~~~pkTk~DF~~~~~~l~~kl~~~~k  159 (245)
T PF08597_consen   80 KAAEEEEDMTPEDPAAEKLRQQRLQEEADLANAKDLFGGVPADPTKDDDSDSLDSFNPKTKEDFEEFAEALAKKLTSFEK  159 (245)
T ss_dssp             --------------------------------------------------SSTTT----SHHHHHHHHHHHHHHHGGGTT
T ss_pred             HhhhcccccCccCHHHHHHHHHHHHHhhhHHHHHHHhcccccccccCCCcccccccCCCCHHHHHHHHHHHHHHHHcccC
Confidence                 11236899999999999999999999999999952       245789999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 047577          143 SYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAAAGKKK  193 (194)
Q Consensus       143 s~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~a~~gkKK  193 (194)
                      |+||+.||+.|||+||.+|++++||+|+++||+|+|||+|+||++.+||||
T Consensus       160 s~~y~~fl~~l~r~l~~~L~~~~ikki~s~l~~l~nEK~K~EK~~~~~kKK  210 (245)
T PF08597_consen  160 SPHYPSFLKELIRDLCKNLTSEDIKKISSSLTVLANEKQKAEKAAKKKKKK  210 (245)
T ss_dssp             STTHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence            999999999999999999999999999999999999999999997755544

In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.

>KOG4813 consensus Translation initiation factor eIF3, p35 subunit [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.5e-45  Score=310.00  Aligned_cols=184  Identities=45%  Similarity=0.667  Sum_probs=144.7

Q ss_pred             CCCcccCCCCCCCc--hhhhcCCCCcccCCCcccccCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccchhcc--------
Q 047577            1 MEDWEDEQIPPLAS--KVVAESKWDDEDVDESDVKESWEDDDEPTPAPPVKPPEKAEKAPSKPASKAPEKKG--------   70 (194)
Q Consensus         1 m~dWd~ed~~~~~~--~~~~~~kWe~Ed~dd~~vkdsWddeee~k~~~~~~~~~~~~~~~kk~~~K~~~~~~--------   70 (194)
                      |+||++++..+.++  ..+.+++|+|||+|+ +|++||+|+|+++..+.+..+..+.+.+++.+.+..++.+        
T Consensus         1 ~ddwed~d~~~~~~~~~~~~~~~w~~ed~de-~v~dsWeDdDeEk~~e~~~k~eap~k~Kk~~a~k~~qk~~~~~~~~~k   79 (248)
T KOG4813|consen    1 MDDWEDEDEVRAVGPGGAALGDKWDGEDEDE-DVKDSWEDDDEEKKEEAKVKPEAPEKVKKKKASKADQKERKAKERQEK   79 (248)
T ss_pred             CcchhhcccccccCcccccccccccccccch-hhhccccccccccccccCCCCCCcCccCccccCccchhhhccchhhHh
Confidence            89999887776543  556899999999887 5999999887432211111111222223333333211111        


Q ss_pred             ---cchhhhh---ccCCCHHHHHHHHHHHHHHhhhHHHHHhhCCCCCC-CCCccCCCCCHHHHHHHHHHHHHhhcCCCCc
Q 047577           71 ---KTTEERK---EEVLDPLAEKLRQQRLVEEADYKSTKELFGKGGDE-KNLDNFIPKSESDFMEYAELISHKLRPYEKS  143 (194)
Q Consensus        71 ---~~~~~~~---~~~~d~~~ek~r~~~~~eeaDL~~A~dLFG~~~~~-~~l~~~~P~Tk~DF~~~~~~L~~kl~~~~ks  143 (194)
                         ++++.+.   ..++.++++++|+|++|++|||++|++|||+.+.. .+++.|||+|+.||++||++|+.+|++|++|
T Consensus        80 a~krkae~es~~~~~~l~~~aek~r~r~lqeesDl~~a~elFgv~d~~~~~~d~fn~~sK~Df~efg~~l~~ki~~~~ks  159 (248)
T KOG4813|consen   80 AKKRKAEPESPAALKPLGQEAEKLRLRALQEESDLALAKELFGVKDTVDEGLDAFNPKSKADFTEFGKLLSDKITPYEKS  159 (248)
T ss_pred             hhhhhccccchhhcCccchhhhhHHHHHHHHHhHHHHHHHhcCCcCcccccccccCcccHHHHHHHHHHHHHHhhcccch
Confidence               0111111   24778899999999999999999999999998866 8999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHH
Q 047577          144 YHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEK  185 (194)
Q Consensus       144 ~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK  185 (194)
                      .||++|+++|||++|.+|++++||+|.++||+|+++|+++|+
T Consensus       160 ~~Y~~f~~dLir~~~~~l~a~~lK~V~~s~~vl~~eK~keE~  201 (248)
T KOG4813|consen  160 LHYASFLKDLIRDVLTNLSAEDLKKVTNSLNVLASEKEKEET  201 (248)
T ss_pred             hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999993

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	194
3bpj_A	80	Crystal Structure Of Human Translation Initiation F		6e-05

>pdb|3BPJ|A Chain A, Crystal Structure Of Human Translation Initiation Factor 3, Subunit 1 Alpha Length = 80

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 115 LDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSIT 174
           +D   P S  DF E+ +L+  K+  YEKS +Y   L+ ++R    SL+  D K + +S+T
Sbjct: 5   IDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLT 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	194
3bpj_A	80	Eukaryotic translation initiation factor 3 subuni;	1e-21

>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens} Length = 80

 Score = 83.4 bits (206), Expect = 1e-21
 Identities = 27/77 (35%), Positives = 44/77 (57%)

Query: 113 KNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASS 172
             +D   P S  DF E+ +L+  K+  YEKS +Y   L+ ++R    SL+  D K + +S
Sbjct: 3   YGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNS 62

Query: 173 ITAIANEKLKAEKEAAA 189
           +T + +EK K EK++ A
Sbjct: 63  LTVLCSEKQKQEKQSKA 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	194
3bpj_A	80	Eukaryotic translation initiation factor 3 subuni;	99.95

>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.4e-28  Score=178.37  Aligned_cols=76  Identities=34%  Similarity=0.561  Sum_probs=69.4

Q ss_pred             CCCccCCCCCHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHhccCChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 047577          113 KNLDNFIPKSESDFMEYAELISHKLRPYEKSYHYIGLLKAVMRLSMTSLKAADAKDVASSITAIANEKLKAEKEAA  188 (194)
Q Consensus       113 ~~l~~~~P~Tk~DF~~~~~~L~~kl~~~~ks~~Y~~fl~~lir~l~~~L~~~~ikki~ssL~~l~nEK~K~EK~a~  188 (194)
                      .+|+.|+|+|++||++||++|+++|++|++|+||+.|+++|||+||.+|++++||+|+++||+|+|||+|+||+++
T Consensus         3 ~~l~~f~P~Tk~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~~L~~~dikkv~s~l~~l~nEK~K~EK~~k   78 (80)
T 3bpj_A            3 YGIDAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQSK   78 (80)
T ss_dssp             -CTTTCCCCSHHHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999854

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00